Query 012137
Match_columns 470
No_of_seqs 306 out of 1420
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 23:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 9.5E-53 2.1E-57 458.9 13.1 436 6-468 27-532 (775)
2 KOG1845 MORC family ATPases [C 99.7 3.6E-18 7.9E-23 188.2 6.7 252 145-448 1-266 (775)
3 PF13589 HATPase_c_3: Histidin 99.7 2.1E-17 4.6E-22 148.7 6.4 92 110-205 4-98 (137)
4 COG0323 MutL DNA mismatch repa 99.7 2E-16 4.3E-21 174.4 12.2 247 106-446 21-292 (638)
5 TIGR00585 mutl DNA mismatch re 99.6 7.5E-15 1.6E-19 149.2 16.7 87 107-201 21-114 (312)
6 PRK00095 mutL DNA mismatch rep 99.6 6.9E-15 1.5E-19 162.1 14.4 90 107-204 21-117 (617)
7 PRK05218 heat shock protein 90 99.5 3.7E-13 8E-18 148.3 15.4 90 111-203 29-144 (613)
8 COG3290 CitA Signal transducti 99.2 9.4E-12 2E-16 132.8 7.3 128 59-203 389-521 (537)
9 KOG1979 DNA mismatch repair pr 99.2 2.9E-11 6.3E-16 128.9 8.4 93 107-205 26-123 (694)
10 COG1389 DNA topoisomerase VI, 99.2 1.5E-10 3.3E-15 121.1 11.8 97 107-204 35-140 (538)
11 COG0326 HtpG Molecular chapero 99.2 7.1E-11 1.5E-15 128.4 8.6 91 112-205 31-146 (623)
12 PRK14083 HSP90 family protein; 99.1 2.1E-10 4.6E-15 126.1 8.8 91 109-203 24-129 (601)
13 PTZ00130 heat shock protein 90 99.0 8.2E-10 1.8E-14 123.8 8.5 89 112-203 92-205 (814)
14 PRK14868 DNA topoisomerase VI 99.0 2.4E-09 5.3E-14 118.9 11.8 96 107-204 45-149 (795)
15 PTZ00272 heat shock protein 83 99.0 1.6E-09 3.5E-14 120.7 10.0 89 112-203 29-141 (701)
16 PF02518 HATPase_c: Histidine 98.9 3.1E-09 6.8E-14 90.6 7.5 93 108-203 5-100 (111)
17 PRK14867 DNA topoisomerase VI 98.8 3.2E-08 7E-13 109.4 11.4 95 108-203 36-139 (659)
18 KOG1978 DNA mismatch repair pr 98.7 1.3E-08 2.7E-13 111.1 6.3 89 107-203 19-114 (672)
19 PRK05559 DNA topoisomerase IV 98.7 1.6E-08 3.4E-13 112.3 6.8 108 87-202 17-139 (631)
20 TIGR01052 top6b DNA topoisomer 98.6 1E-07 2.3E-12 102.4 10.0 97 106-203 26-131 (488)
21 PRK04184 DNA topoisomerase VI 98.6 8.4E-08 1.8E-12 104.2 9.1 97 108-204 36-142 (535)
22 TIGR01055 parE_Gneg DNA topois 98.6 8.9E-08 1.9E-12 106.2 6.7 106 87-203 13-133 (625)
23 PRK09303 adaptive-response sen 98.5 4.9E-07 1.1E-11 93.9 10.3 94 108-204 272-368 (380)
24 PRK10604 sensor protein RstB; 98.5 5.6E-07 1.2E-11 94.8 10.0 92 107-203 318-413 (433)
25 TIGR02938 nifL_nitrog nitrogen 98.5 6.3E-07 1.4E-11 93.0 9.6 92 109-204 388-485 (494)
26 PRK05644 gyrB DNA gyrase subun 98.4 2.9E-07 6.4E-12 102.4 7.1 108 87-202 17-139 (638)
27 PRK11006 phoR phosphate regulo 98.4 7.8E-07 1.7E-11 93.2 9.5 94 107-203 316-413 (430)
28 PRK10364 sensor protein ZraS; 98.4 8.6E-07 1.9E-11 93.5 9.6 90 106-203 346-438 (457)
29 KOG0019 Molecular chaperone (H 98.4 6.2E-07 1.3E-11 97.0 7.3 91 112-205 61-174 (656)
30 PRK15053 dpiB sensor histidine 98.4 1.7E-06 3.6E-11 93.0 10.2 92 108-203 432-529 (545)
31 TIGR01386 cztS_silS_copS heavy 98.3 1.6E-06 3.5E-11 89.9 8.9 92 107-202 352-447 (457)
32 PRK09467 envZ osmolarity senso 98.3 2E-06 4.4E-11 89.3 9.6 91 107-203 330-423 (435)
33 PRK09470 cpxA two-component se 98.3 1.9E-06 4.2E-11 89.7 9.2 92 107-203 352-447 (461)
34 PRK10549 signal transduction h 98.3 2E-06 4.4E-11 90.0 9.3 94 107-203 351-448 (466)
35 TIGR01059 gyrB DNA gyrase, B s 98.3 9.3E-07 2E-11 98.8 7.1 108 87-202 10-132 (654)
36 COG0187 GyrB Type IIA topoisom 98.3 1E-06 2.2E-11 96.1 7.1 108 88-202 16-138 (635)
37 PRK11086 sensory histidine kin 98.3 2.8E-06 6E-11 90.4 10.4 88 108-202 433-524 (542)
38 COG4191 Signal transduction hi 98.3 1.8E-06 3.9E-11 93.7 8.7 89 111-204 500-592 (603)
39 COG0642 BaeS Signal transducti 98.3 2.1E-06 4.6E-11 82.7 8.0 88 107-201 227-317 (336)
40 PRK10755 sensor protein BasS/P 98.2 3E-06 6.6E-11 86.1 8.7 91 106-202 245-338 (356)
41 KOG0020 Endoplasmic reticulum 98.2 1.2E-06 2.6E-11 92.7 5.6 93 112-207 99-220 (785)
42 PRK14939 gyrB DNA gyrase subun 98.2 1.6E-06 3.4E-11 97.9 6.7 108 88-202 17-139 (756)
43 PRK10815 sensor protein PhoQ; 98.2 4.3E-06 9.4E-11 90.0 9.5 89 108-204 378-469 (485)
44 TIGR02966 phoR_proteo phosphat 98.2 5.5E-06 1.2E-10 81.4 9.1 94 107-203 228-325 (333)
45 PRK11100 sensory histidine kin 98.2 5.3E-06 1.2E-10 86.3 9.4 95 106-203 366-463 (475)
46 PRK13837 two-component VirA-li 98.2 6.3E-06 1.4E-10 94.1 10.1 91 107-203 559-665 (828)
47 PRK10618 phosphotransfer inter 98.2 7E-06 1.5E-10 94.8 10.3 96 107-204 564-663 (894)
48 PRK11091 aerobic respiration c 98.1 9.2E-06 2E-10 91.6 9.7 95 107-204 397-496 (779)
49 smart00433 TOP2c Topoisomerase 98.1 2.1E-06 4.6E-11 95.0 4.4 85 112-202 5-103 (594)
50 PRK15347 two component system 98.1 9.2E-06 2E-10 92.6 9.6 91 107-204 512-605 (921)
51 smart00387 HATPase_c Histidine 98.1 2.4E-05 5.3E-10 63.7 8.8 90 109-201 6-98 (111)
52 TIGR02916 PEP_his_kin putative 98.1 1E-05 2.2E-10 90.4 8.7 88 108-203 579-670 (679)
53 PRK11360 sensory histidine kin 98.1 1.4E-05 3.1E-10 84.9 9.3 88 107-202 499-590 (607)
54 PRK11073 glnL nitrogen regulat 98.1 1.3E-05 2.7E-10 80.9 8.5 89 108-201 237-336 (348)
55 cd00075 HATPase_c Histidine ki 98.1 1.9E-05 4.1E-10 63.3 8.0 88 111-201 3-93 (103)
56 PRK10490 sensor protein KdpD; 98.1 1.2E-05 2.6E-10 93.0 9.2 93 107-203 777-872 (895)
57 COG2205 KdpD Osmosensitive K+ 98.0 1.2E-05 2.5E-10 90.2 8.4 92 109-204 776-870 (890)
58 TIGR03785 marine_sort_HK prote 98.0 1.3E-05 2.7E-10 90.4 8.8 93 107-202 596-692 (703)
59 PRK11107 hybrid sensory histid 98.0 1.6E-05 3.5E-10 90.5 9.7 98 107-204 407-509 (919)
60 PRK10337 sensor protein QseC; 98.0 1.5E-05 3.2E-10 83.4 8.2 87 107-202 351-440 (449)
61 PRK11466 hybrid sensory histid 98.0 2.2E-05 4.9E-10 89.7 10.0 91 107-204 560-653 (914)
62 TIGR02956 TMAO_torS TMAO reduc 98.0 1.9E-05 4.2E-10 90.6 9.4 93 107-204 578-674 (968)
63 PRK10841 hybrid sensory kinase 97.9 2.8E-05 6E-10 90.2 9.7 93 107-203 561-657 (924)
64 PRK09835 sensor kinase CusS; P 97.9 2.6E-05 5.6E-10 81.9 8.5 92 107-201 374-469 (482)
65 PRK10547 chemotaxis protein Ch 97.9 4.4E-05 9.5E-10 85.6 10.2 92 111-204 388-514 (670)
66 PRK09959 hybrid sensory histid 97.9 4.3E-05 9.3E-10 90.1 10.3 96 107-203 827-926 (1197)
67 KOG1977 DNA mismatch repair pr 97.9 1.1E-05 2.5E-10 88.5 4.2 87 108-203 21-114 (1142)
68 PRK13557 histidine kinase; Pro 97.8 8.7E-05 1.9E-09 78.6 10.0 92 108-203 277-384 (540)
69 PLN03237 DNA topoisomerase 2; 97.8 3.9E-05 8.6E-10 91.0 8.0 87 110-201 79-180 (1465)
70 TIGR01058 parE_Gpos DNA topois 97.8 3.3E-05 7.2E-10 86.1 6.2 108 87-202 14-136 (637)
71 COG3852 NtrB Signal transducti 97.7 0.0001 2.2E-09 74.9 7.1 88 109-201 242-343 (363)
72 COG0643 CheA Chemotaxis protei 97.6 0.00019 4.2E-09 80.9 8.6 91 113-205 437-565 (716)
73 COG5002 VicK Signal transducti 97.5 0.00029 6.3E-09 72.8 7.6 91 109-202 343-437 (459)
74 COG4585 Signal transduction hi 97.3 0.00041 8.8E-09 71.7 6.9 76 107-202 278-354 (365)
75 TIGR01925 spIIAB anti-sigma F 97.3 0.0009 2E-08 59.3 8.2 84 111-202 42-127 (137)
76 KOG0787 Dehydrogenase kinase [ 97.3 0.00065 1.4E-08 70.7 8.0 89 111-201 263-368 (414)
77 PTZ00109 DNA gyrase subunit b; 97.2 0.00012 2.7E-09 83.4 1.7 107 88-202 110-271 (903)
78 COG5000 NtrY Signal transducti 97.2 0.00059 1.3E-08 74.7 6.5 87 108-201 600-695 (712)
79 PTZ00108 DNA topoisomerase 2-l 97.1 0.00068 1.5E-08 80.9 6.9 89 109-202 58-164 (1388)
80 PRK03660 anti-sigma F factor; 97.1 0.0027 5.8E-08 56.8 8.5 84 111-202 42-127 (146)
81 PRK04069 serine-protein kinase 97.1 0.00068 1.5E-08 62.7 4.7 84 112-199 46-131 (161)
82 PHA02569 39 DNA topoisomerase 97.1 0.0004 8.7E-09 77.1 3.7 83 112-201 49-150 (602)
83 PRK10600 nitrate/nitrite senso 97.1 0.0012 2.6E-08 72.1 7.4 77 107-204 468-547 (569)
84 PLN03128 DNA topoisomerase 2; 97.0 0.0013 2.8E-08 77.6 7.6 89 108-201 52-155 (1135)
85 PRK11644 sensory histidine kin 97.0 0.0012 2.6E-08 71.6 6.5 70 108-199 410-482 (495)
86 COG3850 NarQ Signal transducti 97.0 0.0017 3.6E-08 70.3 7.1 79 108-205 481-560 (574)
87 PRK13560 hypothetical protein; 96.9 0.0015 3.3E-08 72.7 6.7 74 111-200 714-792 (807)
88 TIGR01924 rsbW_low_gc serine-p 96.8 0.0019 4.2E-08 59.7 5.6 84 112-199 46-131 (159)
89 COG4192 Signal transduction hi 96.8 0.0026 5.6E-08 67.9 6.7 69 111-185 567-635 (673)
90 PF13581 HATPase_c_2: Histidin 96.6 0.0052 1.1E-07 53.4 6.2 78 111-197 34-113 (125)
91 COG4251 Bacteriophytochrome (l 96.5 0.0061 1.3E-07 67.3 7.6 91 107-203 635-731 (750)
92 COG2972 Predicted signal trans 96.4 0.008 1.7E-07 64.5 7.6 117 61-203 316-442 (456)
93 PRK10935 nitrate/nitrite senso 96.2 0.015 3.2E-07 62.8 8.4 76 109-204 472-550 (565)
94 COG3851 UhpB Signal transducti 95.8 0.016 3.4E-07 60.5 6.0 94 86-201 388-484 (497)
95 PRK13559 hypothetical protein; 95.0 0.059 1.3E-06 54.8 6.9 75 109-201 268-348 (361)
96 COG2172 RsbW Anti-sigma regula 94.3 0.18 3.8E-06 46.4 7.7 83 111-201 43-128 (146)
97 PF14501 HATPase_c_5: GHKL dom 93.8 0.15 3.3E-06 43.0 5.8 75 111-198 8-87 (100)
98 COG3920 Signal transduction hi 93.4 0.13 2.8E-06 50.3 5.4 47 112-158 126-174 (221)
99 COG4564 Signal transduction hi 92.5 0.32 7E-06 50.5 6.8 76 109-203 360-438 (459)
100 COG3275 LytS Putative regulato 86.3 1.6 3.4E-05 47.6 6.3 45 112-158 460-507 (557)
101 KOG0355 DNA topoisomerase type 66.0 19 0.00042 41.6 7.7 46 109-159 54-101 (842)
102 cd03486 MutL_Trans_MLH3 MutL_T 41.7 41 0.0009 30.4 4.4 30 395-425 27-56 (141)
103 PF01119 DNA_mis_repair: DNA m 34.7 52 0.0011 28.7 3.8 51 395-446 22-80 (119)
104 cd03482 MutL_Trans_MutL MutL_T 29.1 81 0.0018 27.8 4.1 30 395-425 26-57 (123)
105 cd03483 MutL_Trans_MLH1 MutL_T 25.8 1E+02 0.0022 27.3 4.2 30 395-425 31-61 (127)
106 cd00782 MutL_Trans MutL_Trans: 25.1 70 0.0015 27.6 3.0 30 395-425 26-57 (122)
107 cd03485 MutL_Trans_hPMS_1_like 23.9 1.1E+02 0.0023 27.3 3.9 51 395-446 29-93 (132)
108 PF15144 DUF4576: Domain of un 23.6 29 0.00063 28.9 0.2 22 93-124 44-65 (88)
109 cd03484 MutL_Trans_hPMS_2_like 22.8 1.2E+02 0.0026 27.5 4.1 31 394-425 43-77 (142)
110 PF04008 Adenosine_kin: Adenos 22.2 49 0.0011 30.8 1.4 19 434-452 117-137 (155)
111 KOG3938 RGS-GAIP interacting p 20.9 1.3E+02 0.0028 30.9 4.2 31 121-155 120-150 (334)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.5e-53 Score=458.93 Aligned_cols=436 Identities=44% Similarity=0.607 Sum_probs=362.4
Q ss_pred CCCceeEEccCCCCCCCeecccCCCcccCcCcccccCCCCCCcccccCCCCCCCCC-------------------Cchhh
Q 012137 6 EKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNE-------------------APESR 66 (470)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 66 (470)
..+-++++.++|-+.+.+-.+.....+...++.....|...+ .++.++++.|++ +.+|+
T Consensus 27 ~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e--~~~~~~vvvP~~t~~~~~~~~~~~k~~~~l~~~~c~ 104 (775)
T KOG1845|consen 27 YGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHE--SEADDAVVVPCPTFNPRTREIVTEKFAFSLEAIYCR 104 (775)
T ss_pred cccccccCcccccccccCcccceeeccccccceeeeeccccc--ccccccceecccccccccccccccccccccchhhhc
Confidence 456678888777444444333333344455555555554443 233344444443 45599
Q ss_pred hhhhccccCcccccccCCCcCcccccccCcccccccccchhhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCC-Cce
Q 012137 67 SFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDN-SPA 145 (470)
Q Consensus 67 ~~~kA~~~~~~~~~~~~~~~~~~~~l~~~p~fL~s~~tsH~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~-~~~ 145 (470)
||||||+|.+..........|...++.+||+|||+|+|+|+|.++|+++|||||+|...++++.+.|+......+. ...
T Consensus 105 sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a 184 (775)
T KOG1845|consen 105 SFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRA 184 (775)
T ss_pred CcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeeeeccccccccee
Confidence 9999999999444333444556799999999999999999999999999999999999999999888866543333 445
Q ss_pred EEEE-----eCCCCCCHHHHHHhhhcCcccccC-CCCCCcccccccccccccCCeEEEEee--eCCCCCcceeeeeeeeE
Q 012137 146 LVFI-----DDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFKTSTMRLGADVIVFSR--ATHESKSTQSIGLLSYT 217 (470)
Q Consensus 146 i~I~-----DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK~As~~lg~~v~V~Sr--~~~~~~~~~svgllS~t 217 (470)
++|+ |||+||.++-+.++|.+|++.|.+ ..++|+||+|||++.|++|+++.|++| ...+...++++|+|||+
T Consensus 185 ~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~t 264 (775)
T KOG1845|consen 185 LVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYT 264 (775)
T ss_pred EEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEe
Confidence 5555 779999999999999999999887 789999999999999999999999999 44566789999999999
Q ss_pred eeccCCCCCeEeee----eeccCCCcccccccccCccccchhhhh-----hhccCCCCChHHHHHh--------------
Q 012137 218 YLRKTGQDDVIVPM----IDFDISGHWAEPIIYSSQDDWSFNLKT-----ILEWSPFASKSELLQQ-------------- 274 (470)
Q Consensus 218 fl~~~~~~di~vP~----~d~d~~~~~~~~ii~~~~~~w~~~l~~-----Il~~Spf~~e~el~~q-------------- 274 (470)
|++.++.+|++||| .+++...+.+.++++.+..+|..++.+ +++|+||.++.+++.|
T Consensus 265 fL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~ 344 (775)
T KOG1845|consen 265 FLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGH 344 (775)
T ss_pred eeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcc
Confidence 99999999999999 888888888889998889999999888 9999999999999999
Q ss_pred -hcccCCCeeEEEEecc--ccccCCcccccCCCCchhhhccccccccccccchhhhhhhhccchhhhhhhHHhhhhhhhc
Q 012137 275 -FEDIGPHGTKVIIYNL--WMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYL 351 (470)
Q Consensus 275 -f~~i~~~GT~IiI~nL--w~~~~g~~eldf~~d~~Di~i~~~~~~~~~~~~~~~~~~~~~hi~~~~~~SLRaY~siLYL 351 (470)
++.+..+||.+|+||+ |.+.+|.+|++|..++++|.. .+-++++.|.+|||+
T Consensus 345 ~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-------------------------~~~~~~~s~~sil~~ 399 (775)
T KOG1845|consen 345 QFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-------------------------TYCHSHLSEASILLL 399 (775)
T ss_pred hhhhccCCCceeeeechhhhcccccceeeccccCcccccc-------------------------cchhhhhhcccccch
Confidence 8888899999999999 999999999999988776641 345677899999999
Q ss_pred CCCCcEEEEEcCeeecccccccccCCCceeccCcccCCCCC---cceEEEEEEEecCCC-CCCCceEEEEEcCeeec---
Q 012137 352 GKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLK---DATAETTIGFIKEAP-ALSVSGFNVYHKNRLIR--- 424 (470)
Q Consensus 352 ~~~~~~~I~lnG~~V~~~~i~~~l~~~~~~~ykp~~~~~~~---~~~v~i~~Gf~~~~~-~~~~~G~~vY~nnRLI~--- 424 (470)
..+.+|++++.|+.+.++.+.+..+..+...|.|+..+... ........||.+.++ +.+.++++|||.+|||.
T Consensus 400 ~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~ 479 (775)
T KOG1845|consen 400 TRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGC 479 (775)
T ss_pred hccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhcc
Confidence 99999999999999999999999999999999999866421 233344568887774 78888999999999999
Q ss_pred -ccccccccCCCccceEEeeeee-ee-------cchhhhhHHHHHHHHhhhcc
Q 012137 425 -PFWKVTGDGSLKGNGVVGIHTL-FV-------GFFLLIFFSDLHITLLDVHR 468 (470)
Q Consensus 425 -~~~kv~~~~~~~g~GviGVle~-f~-------~~~~~~~~~~~~~~~~~~~~ 468 (470)
|+||.++...+.++++++++++ |+ |+++++|++++|+++.++.+
T Consensus 480 ~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~ 532 (775)
T KOG1845|consen 480 RPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLN 532 (775)
T ss_pred cceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhccc
Confidence 9999999999999999999999 88 99999999999999987754
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=3.6e-18 Score=188.19 Aligned_cols=252 Identities=25% Similarity=0.372 Sum_probs=194.5
Q ss_pred eEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccccccccCCeEEEEeeeCCCCCcceeeeeeeeEeeccCCC
Q 012137 145 ALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQ 224 (470)
Q Consensus 145 ~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~~~~~~~svgllS~tfl~~~~~ 224 (470)
++++.|||.||+++++.++..|+. ....+|.||+|+|..+|++|+++.++|+.. .+.+++++|++|++....
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~----~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~----~~~s~~~~sqt~~e~~~~ 72 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV----GLYGIGDYGNGLKSGSMRIGKDFILFTKKE----STMSCLFLSQTFHESEAD 72 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc----cccccccccCcccccccccCcccceeeccc----cccceeeeeccccccccc
Confidence 467899999999999999988833 246789999999999999999999999974 267899999999999999
Q ss_pred CCeEeeeeeccCCCcccccccccCccccchhhhhhhccCCCCChHHHHHhhccc-CCCe-eEEEEeccccccCCcccccC
Q 012137 225 DDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDI-GPHG-TKVIIYNLWMNDEGVYELSF 302 (470)
Q Consensus 225 ~di~vP~~d~d~~~~~~~~ii~~~~~~w~~~l~~Il~~Spf~~e~el~~qf~~i-~~~G-T~IiI~nLw~~~~g~~eldf 302 (470)
+.++||+..|+..+... .++.+.+++++|..+|+|.+++.++.+++++ +..| |.+||.|+.+-..|.++++|
T Consensus 73 ~~vvvP~~t~~~~~~~~------~~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 73 DAVVVPCPTFNPRTREI------VTEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred ccceecccccccccccc------cccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCccccc
Confidence 99999999999766442 2377888999999999999999999999987 4555 99999999999999999999
Q ss_pred CCCchhhhccccccccccccchhhhhhhhccchhhhhhhHHhhhhhhhcCCCCcEEEEEcCeeecccccccccCCCceec
Q 012137 303 DDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVIS 382 (470)
Q Consensus 303 ~~d~~Di~i~~~~~~~~~~~~~~~~~~~~~hi~~~~~~SLRaY~siLYL~~~~~~~I~lnG~~V~~~~i~~~l~~~~~~~ 382 (470)
..++.||++.++--+.. . . ..|+.++|+. |.|+|++++..|+...++.+.-.
T Consensus 147 a~~a~aeLldnalDEi~------------~------~---~tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg~----- 198 (775)
T KOG1845|consen 147 AKGAIAELLDNALDEIT------------N------G---ATFVRVDYIN--PVMDIFIRALVVQLKRISDDGGG----- 198 (775)
T ss_pred ccChhhhhccccccccc------------c------c---cceEEeeeec--ccccccceeEEeeccceeccccc-----
Confidence 99999999865543211 0 1 1347788887 88999999999988765544321
Q ss_pred cCcccCC-----------CCCcceEEEEEEEecCCCCCCCceEEEEEcCeeecccccccccCCCccceEEeeeee-ee
Q 012137 383 YRPQVSA-----------PLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGIHTL-FV 448 (470)
Q Consensus 383 ykp~~~~-----------~~~~~~v~i~~Gf~~~~~~~~~~G~~vY~nnRLI~~~~kv~~~~~~~g~GviGVle~-f~ 448 (470)
.+|+... .......+...||... ....|-.+|+-.|. -.+.+.+..+.||.+.+ |+
T Consensus 199 ~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfkts---t~rlGa~~i~~~R~-------~~~~~~kstqsiglls~tfL 266 (775)
T KOG1845|consen 199 MKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTS---TMRLGADAIVFSRC-------ESRRGLKSTQSIGLLSYTFL 266 (775)
T ss_pred cCHHHHHHHHHhhhhhhhhhhhhhhhhccccccc---hhhhccceeEeehh-------hhhccCCcceeEEEEEEeee
Confidence 1222100 0011223344566654 34478888888887 23567888899999999 88
No 3
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.69 E-value=2.1e-17 Score=148.68 Aligned_cols=92 Identities=36% Similarity=0.556 Sum_probs=78.4
Q ss_pred HHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC---CCCCCcccccccc
Q 012137 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA---NKTIGQYGNGFKT 186 (470)
Q Consensus 110 f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~---~~~iG~fGiGlK~ 186 (470)
..||+|||+||+|| .|+.|.|.+.... .+...|.|.|||.||+++++.++|++|.+++.. ...+|+||+|+|.
T Consensus 4 ~~al~ElI~Ns~DA---~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~ 79 (137)
T PF13589_consen 4 EDALRELIDNSIDA---GATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKL 79 (137)
T ss_dssp THHHHHHHHHHHHH---HHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGG
T ss_pred HHHHHHHHHHHHHc---cCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHH
Confidence 34999999999999 6888999987643 467899999999999999999999999998873 6789999999999
Q ss_pred cccccCCeEEEEeeeCCCC
Q 012137 187 STMRLGADVIVFSRATHES 205 (470)
Q Consensus 187 As~~lg~~v~V~Sr~~~~~ 205 (470)
|++++|+.+.|.|++.+..
T Consensus 80 A~~~~~~~~~v~S~~~~~~ 98 (137)
T PF13589_consen 80 AIFSLGDRVEVISKTNGES 98 (137)
T ss_dssp GGGGTEEEEEEEEESTTSS
T ss_pred HHHHhcCEEEEEEEECCCC
Confidence 9999999999999997543
No 4
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.67 E-value=2e-16 Score=174.45 Aligned_cols=247 Identities=21% Similarity=0.242 Sum_probs=153.4
Q ss_pred hhhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------CCCCC
Q 012137 106 HKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIG 178 (470)
Q Consensus 106 H~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-------~~~iG 178 (470)
-+.|.+||.|||+||+|| ||+.|.|.+. .+|...|.|.|||+||+++++.-++....++|-. -.++|
T Consensus 21 IerPaSVVKELVENSlDA---GAt~I~I~ve---~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~TlG 94 (638)
T COG0323 21 IERPASVVKELVENSLDA---GATRIDIEVE---GGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTLG 94 (638)
T ss_pred eecHHHHHHHHHhccccc---CCCEEEEEEc---cCCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhccC
Confidence 367899999999999999 9999999884 5677889999999999999999999999999886 13334
Q ss_pred cccccccccccccCCeEEEEeeeCCCCCcceeeeeeeeEeeccCCCCCeEeeeeeccCCCcccccccccCccccchhhhh
Q 012137 179 QYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKT 258 (470)
Q Consensus 179 ~fGiGlK~As~~lg~~v~V~Sr~~~~~~~~~svgllS~tfl~~~~~~di~vP~~d~d~~~~~~~~ii~~~~~~w~~~l~~ 258 (470)
..|=. ++|.+...+++|.||+.+.. .| +.+...|+.+..
T Consensus 95 FRGEA--L~SIasVsrlti~Srt~~~~-----~~-------------------~~~~~~g~~~~~--------------- 133 (638)
T COG0323 95 FRGEA--LASIASVSRLTITSRTAEAS-----EG-------------------TQIYAEGGGMEV--------------- 133 (638)
T ss_pred ccHHH--HHHHHhhheeEEEeecCCcC-----ce-------------------EEEEecCCcccc---------------
Confidence 44444 57888899999999965432 11 123333332110
Q ss_pred hhccCCCCChHHHHHhhccc-CCCeeEEEEeccccccCCcccccCCCCchhhhccccccccccccchhhhhhhhccc-hh
Q 012137 259 ILEWSPFASKSELLQQFEDI-GPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHI-SY 336 (470)
Q Consensus 259 Il~~Spf~~e~el~~qf~~i-~~~GT~IiI~nLw~~~~g~~eldf~~d~~Di~i~~~~~~~~~~~~~~~~~~~~~hi-~~ 336 (470)
. .... ...||.|.|.||+.|.+...- | ++.... +. .|| ..
T Consensus 134 --~-------------~~p~a~~~GTtVeV~dLF~NtPaRrK--f--------lks~~~------------E~-~~i~~v 175 (638)
T COG0323 134 --T-------------VKPAAHPVGTTVEVRDLFYNTPARRK--F--------LKSEKT------------EF-GHITEL 175 (638)
T ss_pred --c-------------ccCCCCCCCCEEEehHhhccChHHHH--h--------hcccHH------------HH-HHHHHH
Confidence 0 0111 235999999999999764322 1 111111 11 232 23
Q ss_pred hhhhhHHhhhhhhhcCCCCcEEEEEcCe---eecccccccccCCCceeccCcccCCC-----CCcceEEEEEEEecCC--
Q 012137 337 RIRYSLRAYASMLYLGKFDNFKIILRGK---PIQQFHIADELKFPKVISYRPQVSAP-----LKDATAETTIGFIKEA-- 406 (470)
Q Consensus 337 ~~~~SLRaY~siLYL~~~~~~~I~lnG~---~V~~~~i~~~l~~~~~~~ykp~~~~~-----~~~~~v~i~~Gf~~~~-- 406 (470)
+-+|+| +.. .-+|+++.+|+ .+....-..+...+-.-.|.+.+... .....+.+ .||...+
T Consensus 176 v~r~AL-ahp-------~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~~~~~~l-~G~v~~P~~ 246 (638)
T COG0323 176 INRYAL-AHP-------DISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENEHEDLRL-SGYVSLPEF 246 (638)
T ss_pred HHHHHh-cCC-------CeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccCCCceEE-EEEeccccc
Confidence 334555 222 24899999999 44443322222111122344433221 11245666 5887665
Q ss_pred CCCCCceEEEEEcCeeecccccc--ccc----CCCccceEEeeeee
Q 012137 407 PALSVSGFNVYHKNRLIRPFWKV--TGD----GSLKGNGVVGIHTL 446 (470)
Q Consensus 407 ~~~~~~G~~vY~nnRLI~~~~kv--~~~----~~~~g~GviGVle~ 446 (470)
........|+|.|||.|+...-. ..+ --..|+--+=||.+
T Consensus 247 ~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l 292 (638)
T COG0323 247 TRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFL 292 (638)
T ss_pred ccCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEE
Confidence 47788899999999999976311 111 12455555555554
No 5
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=7.5e-15 Score=149.20 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------CCCCCc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-------~~~iG~ 179 (470)
..|.+||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..++++|.. ..+.|.
T Consensus 21 ~~~~~~l~eLi~Na~dA---~a~~I~i~~~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~ 94 (312)
T TIGR00585 21 ERPASVVKELVENSLDA---GATRIDVEIEE---GGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGF 94 (312)
T ss_pred hhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCc
Confidence 56777999999999999 88989888753 234569999999999999999999988887765 245688
Q ss_pred ccccccccccccCCeEEEEeee
Q 012137 180 YGNGFKTSTMRLGADVIVFSRA 201 (470)
Q Consensus 180 fGiGlK~As~~lg~~v~V~Sr~ 201 (470)
+|.||. +++..++++|.|++
T Consensus 95 rG~al~--si~~~s~~~i~S~~ 114 (312)
T TIGR00585 95 RGEALA--SISSVSRLTITTKT 114 (312)
T ss_pred cchHHH--HHHhhCcEEEEEee
Confidence 888874 44455589999998
No 6
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.60 E-value=6.9e-15 Score=162.12 Aligned_cols=90 Identities=22% Similarity=0.353 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCC-------CCCCc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN-------KTIGQ 179 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~-------~~iG~ 179 (470)
+.|.++|.||||||+|| ||+.|.|.+. .++...|.|.|||.||+++++..++..++++|... .+.|.
T Consensus 21 ~~~~svvkElveNsiDA---gat~I~v~i~---~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~Gf 94 (617)
T PRK00095 21 ERPASVVKELVENALDA---GATRIDIEIE---EGGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGF 94 (617)
T ss_pred cCHHHHHHHHHHHHHhC---CCCEEEEEEE---eCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCc
Confidence 67888999999999999 8999999984 34667899999999999999999999888888752 46788
Q ss_pred ccccccccccccCCeEEEEeeeCCC
Q 012137 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (470)
Q Consensus 180 fGiGlK~As~~lg~~v~V~Sr~~~~ 204 (470)
.|.||.+ .+...+++|.|++.++
T Consensus 95 rGeAL~s--I~~vs~l~i~s~~~~~ 117 (617)
T PRK00095 95 RGEALPS--IASVSRLTLTSRTADA 117 (617)
T ss_pred chhHHHh--hhhceEEEEEEecCCC
Confidence 8888753 3344589999998643
No 7
>PRK05218 heat shock protein 90; Provisional
Probab=99.48 E-value=3.7e-13 Score=148.32 Aligned_cols=90 Identities=28% Similarity=0.402 Sum_probs=66.9
Q ss_pred HHHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCccccc----
Q 012137 111 GAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK---- 172 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K~---- 172 (470)
.+|+|||.||.||... ++....|.+..+. +...|.|.|||.||+.+++...+ +.|.|.+.
T Consensus 29 v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~ 106 (613)
T PRK05218 29 IFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTLTISDNGIGMTREEVIENLGTIAKSGTKEFLE 106 (613)
T ss_pred HHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeEEEEECCCCCCHHHHHHHHHhhccccchhHHH
Confidence 4899999999999631 2233455544322 34469999999999999999765 47766321
Q ss_pred --------CCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 173 --------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 173 --------~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
....+|+||+||. ++|.++++++|.||+.+
T Consensus 107 k~~~~~~~~~~~iG~fGiGf~-S~f~va~~v~V~Sr~~~ 144 (613)
T PRK05218 107 KLKGDQKKDSQLIGQFGVGFY-SAFMVADKVTVITRSAG 144 (613)
T ss_pred HhhcccccccccccccCcCch-hhhhccCEEEEEEcCCC
Confidence 2456899999997 46779999999999864
No 8
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.24 E-value=9.4e-12 Score=132.84 Aligned_cols=128 Identities=21% Similarity=0.244 Sum_probs=95.1
Q ss_pred CCCCchhhhhhhccccCcccccccCCCcCcccccccCcccccccccchhhHHHHHHHHHHchhhhhhC--CCceEEEEEE
Q 012137 59 VNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN--GATFVKVDRV 136 (470)
Q Consensus 59 ~~~~~~~~~~~kA~~~~~~~~~~~~~~~~~~~~l~~~p~fL~s~~tsH~w~f~AIaELIDNAiDA~~~--gA~~V~I~i~ 136 (470)
-.++++++|+.||+|.++++. ++..+.+.+ .|..+ .+.....+++||||||+||... ..+.|.+.+.
T Consensus 389 ~lAg~LlgK~~rArElgv~l~---Id~~S~l~~---~p~~~-----~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~ 457 (537)
T COG3290 389 VLAGFLLGKISRARELGVSLI---IDPNSQLPQ---LPSEL-----QPHDLVTILGNLIDNALEALLAPEENKEIELSLS 457 (537)
T ss_pred HHHHHHHhHHHHHHHcCceEE---EcCCCcCCC---CCCcc-----ChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEE
Confidence 345899999999999999654 442222222 11111 2233344999999999999852 2356666664
Q ss_pred EecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc---ccccccCCeEEEEeeeCC
Q 012137 137 NIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK---TSTMRLGADVIVFSRATH 203 (470)
Q Consensus 137 ~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK---~As~~lg~~v~V~Sr~~~ 203 (470)
..++...|+|.||||||+++....+|..|+|+|.. +..|+||+ ...-++|..++|.|....
T Consensus 458 --~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~----~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~ 521 (537)
T COG3290 458 --DRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT----GGRGIGLYLVKQLVERLGGSIEVESEKGQ 521 (537)
T ss_pred --ecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC----CCCchhHHHHHHHHHHcCceEEEeeCCCC
Confidence 46678999999999999999999999999999973 34799986 356789999999998543
No 9
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=99.20 E-value=2.9e-11 Score=128.92 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC----CCCCCcccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA----NKTIGQYGN 182 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~----~~~iG~fGi 182 (470)
..|..||.|||+||+|| +++.|.|.+. .+|-..+.|.|||.||-.+++.-.++.+.++|-. ...+.-||.
T Consensus 26 ~RP~NAlKEliENSLDA---~ST~I~V~vk---~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~lsTyGF 99 (694)
T KOG1979|consen 26 QRPVNALKELIENSLDA---NSTSIDVLVK---DGGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLSTYGF 99 (694)
T ss_pred hchHHHHHHHHhccccC---CCceEEEEEe---cCCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhhhcCc
Confidence 56788999999999999 8999999884 5677889999999999999999888877777764 234444554
Q ss_pred -cccccccccCCeEEEEeeeCCCC
Q 012137 183 -GFKTSTMRLGADVIVFSRATHES 205 (470)
Q Consensus 183 -GlK~As~~lg~~v~V~Sr~~~~~ 205 (470)
|=.+|+++..++|+|.||.+++.
T Consensus 100 RGEALASiShVA~VtV~TK~~~~~ 123 (694)
T KOG1979|consen 100 RGEALASISHVAHVTVTTKTAEGK 123 (694)
T ss_pred cHHHHhhhhheeEEEEEEeecCce
Confidence 44578999999999999998654
No 10
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.17 E-value=1.5e-10 Score=121.06 Aligned_cols=97 Identities=25% Similarity=0.365 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHchhhhhh-CC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhh-cCcccccC--CCCCCccc
Q 012137 107 KWAFGAIAELLDNAVDEVQ-NG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYG 181 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~-~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~-~G~S~K~~--~~~iG~fG 181 (470)
+.+.++|.|||+||+||+. +| -..|.|.+... ..+...+.|+|||+||+++.+.++|. +-+++|.. .++.|++|
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqG 113 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQG 113 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhcccccc
Confidence 4455599999999999985 33 25677777653 24678899999999999999999997 77888874 78889999
Q ss_pred cccccc----ccccCCeEEEEeeeCCC
Q 012137 182 NGFKTS----TMRLGADVIVFSRATHE 204 (470)
Q Consensus 182 iGlK~A----s~~lg~~v~V~Sr~~~~ 204 (470)
+|.+.| -|..|+.+.|.|.+.++
T Consensus 114 iGis~avLysQmTtGkPv~V~s~T~~s 140 (538)
T COG1389 114 IGISAAVLYSQMTTGKPVRVISSTGDS 140 (538)
T ss_pred ccHHHHHHHHHhcCCCceEEEecCCCC
Confidence 999854 57889999999999753
No 11
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.1e-11 Score=128.37 Aligned_cols=91 Identities=26% Similarity=0.463 Sum_probs=69.6
Q ss_pred HHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhh-cCcccccC----
Q 012137 112 AIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA---- 173 (470)
Q Consensus 112 AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~-~G~S~K~~---- 173 (470)
.|+|||.||-||+.. +.....|.+.. +....+|+|.|||.||+.+++.+.+. .+.|....
T Consensus 31 FLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~--Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~ 108 (623)
T COG0326 31 FLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF--DKDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLES 108 (623)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE--cccCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHH
Confidence 599999999999731 11235555543 34668999999999999999987664 66664332
Q ss_pred -------CCCCCcccccccccccccCCeEEEEeeeCCCC
Q 012137 174 -------NKTIGQYGNGFKTSTMRLGADVIVFSRATHES 205 (470)
Q Consensus 174 -------~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~~~ 205 (470)
..-||+||+||.+|.| ++++|+|.||..+.+
T Consensus 109 l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~ 146 (623)
T COG0326 109 LSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGED 146 (623)
T ss_pred hccccccccccccccchhhheee-eeeeEEEEeccCCCC
Confidence 2348999999998777 999999999997654
No 12
>PRK14083 HSP90 family protein; Provisional
Probab=99.09 E-value=2.1e-10 Score=126.09 Aligned_cols=91 Identities=26% Similarity=0.479 Sum_probs=70.5
Q ss_pred HHHHHHHHHHchhhhhhC--C-----CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHh-hhcCcccccC-------
Q 012137 109 AFGAIAELLDNAVDEVQN--G-----ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKC-MSLGYSTKKA------- 173 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~~--g-----A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~-~~~G~S~K~~------- 173 (470)
+..+|.|||.||.||... . ...|.|.+. +.+...|.|.|||.||+.+++.+. ...|.|+|..
T Consensus 24 ~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~---d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~ 100 (601)
T PRK14083 24 PRVYVRELLQNAVDAITARRALDPTAPGRIRIELT---DAGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFAR 100 (601)
T ss_pred cHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc---cCCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccc
Confidence 346899999999999742 0 125666552 235678999999999999999975 5688877654
Q ss_pred CCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 174 NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 174 ~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
...||+||+||+ ++|.+|.++.|.|+..+
T Consensus 101 ~~~IG~FGIGf~-S~F~vad~v~V~Tr~~~ 129 (601)
T PRK14083 101 NDFLGQFGIGLL-SCFLVADEIVVVSRSAK 129 (601)
T ss_pred cccccccccceE-EEEEecCEEEEEeccCC
Confidence 246899999998 45669999999999853
No 13
>PTZ00130 heat shock protein 90; Provisional
Probab=98.99 E-value=8.2e-10 Score=123.80 Aligned_cols=89 Identities=25% Similarity=0.407 Sum_probs=67.0
Q ss_pred HHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHh-hhcCccccc-----
Q 012137 112 AIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKC-MSLGYSTKK----- 172 (470)
Q Consensus 112 AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~-~~~G~S~K~----- 172 (470)
+|.|||.||.||... ....+.|.+.. +.....|+|.|||.||+.+++.+. ...++|...
T Consensus 92 FLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~--D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~ 169 (814)
T PTZ00130 92 FLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA--NKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEA 169 (814)
T ss_pred eeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEE--CCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHH
Confidence 699999999999741 11345666643 334568999999999999998765 457766311
Q ss_pred ------CCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 173 ------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 173 ------~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
...-||+||+||.++.| ++.+|+|.||..+
T Consensus 170 l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~Trs~~ 205 (814)
T PTZ00130 170 ISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNN 205 (814)
T ss_pred hhccCCCcccccccccchhheee-ecCEEEEEEcCCC
Confidence 24578999999986555 9999999999754
No 14
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.98 E-value=2.4e-09 Score=118.86 Aligned_cols=96 Identities=24% Similarity=0.344 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHchhhhhhCCC--ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhh-cCcccccC--CCCCCccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYG 181 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA--~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~-~G~S~K~~--~~~iG~fG 181 (470)
.++..+|.|||+||+||...+. ..|.|.+.. .+....|.|.|||+||+++++.++|. |.+++|.. ....|+.|
T Consensus 45 r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~--~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG 122 (795)
T PRK14868 45 RGLVTAVKEAVDNALDATEEAGILPDIYVEIEE--VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQG 122 (795)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE--CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCc
Confidence 4566799999999999953222 157777653 33456899999999999999999997 55576644 35678899
Q ss_pred ccccccc----cccCCeEEEEeeeCCC
Q 012137 182 NGFKTST----MRLGADVIVFSRATHE 204 (470)
Q Consensus 182 iGlK~As----~~lg~~v~V~Sr~~~~ 204 (470)
+||.++. +..|+.+.|.|+..++
T Consensus 123 ~GLglai~~sqlt~GgpI~I~S~~~~~ 149 (795)
T PRK14868 123 IGISAAVLYSQLTSGKPAKITSRTQGS 149 (795)
T ss_pred eehHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 9997542 4568999999998543
No 15
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=98.97 E-value=1.6e-09 Score=120.71 Aligned_cols=89 Identities=26% Similarity=0.385 Sum_probs=66.5
Q ss_pred HHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCccccc-----
Q 012137 112 AIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK----- 172 (470)
Q Consensus 112 AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K~----- 172 (470)
.|+|||.||.||+.. ....+.|.+.. +.....|.|.|||.||+.+++.+.+ ..++|...
T Consensus 29 flRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~--d~~~~~L~I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~ 106 (701)
T PTZ00272 29 FLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVP--DKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEA 106 (701)
T ss_pred hHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEE--cCCCCEEEEEECCCCCCHHHHHHHhhhhhhcchHHHHHH
Confidence 699999999999631 12345666654 3355789999999999999987655 46665222
Q ss_pred -----CCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 173 -----ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 173 -----~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
+...||+||+||.++.| ++.+|.|.||..+
T Consensus 107 ~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~ 141 (701)
T PTZ00272 107 LEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNS 141 (701)
T ss_pred hhccCCccccCCCCcceEEEEE-eccEEEEEEecCC
Confidence 13578999999986555 9999999999754
No 16
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.91 E-value=3.1e-09 Score=90.60 Aligned_cols=93 Identities=24% Similarity=0.362 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccccc
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~A 187 (470)
.+..+|.||++||+++...+ ..|.|.+.. .++...|+|.|||.||+++++.+++..+++.+......+.+|+||..+
T Consensus 5 ~l~~il~~ll~Na~~~~~~~-~~I~i~~~~--~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~~~~~g~GlGL~~~ 81 (111)
T PF02518_consen 5 RLRQILSELLDNAIKHSPEG-GKIDITIEE--DDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSETSISGHGLGLYIV 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SEEEEEEEE--ETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSSGGSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-CEEEEEEEE--ecCeEEEEEEeccccccccccccchhhcccccccccccCCCChHHHHH
Confidence 34569999999999997543 578887764 347889999999999999999999998887766545556699999643
Q ss_pred ---ccccCCeEEEEeeeCC
Q 012137 188 ---TMRLGADVIVFSRATH 203 (470)
Q Consensus 188 ---s~~lg~~v~V~Sr~~~ 203 (470)
.-.++.++.+.+...+
T Consensus 82 ~~~~~~~~g~l~~~~~~~~ 100 (111)
T PF02518_consen 82 KQIAERHGGELTIESSEGG 100 (111)
T ss_dssp HHHHHHTTEEEEEEEETTT
T ss_pred HHHHHHCCCEEEEEEcCCC
Confidence 4568888999888643
No 17
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.78 E-value=3.2e-08 Score=109.36 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHchhhhhhCC--CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhc-CcccccC--CCCCCcccc
Q 012137 108 WAFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSL-GYSTKKA--NKTIGQYGN 182 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~g--A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~-G~S~K~~--~~~iG~fGi 182 (470)
.+.+++.|||+||+||.... ...|.|.+... ......|.|.|||+||+++++.++|.. .+++|.. ..+.|..|+
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~ 114 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEILPDIKVEIEKL-GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGI 114 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcc
Confidence 34469999999999996421 13677777531 123457999999999999999999985 4556654 366788999
Q ss_pred cccccc----cccCCeEEEEeeeCC
Q 012137 183 GFKTST----MRLGADVIVFSRATH 203 (470)
Q Consensus 183 GlK~As----~~lg~~v~V~Sr~~~ 203 (470)
||.++. +..|+.+.|.|+..+
T Consensus 115 GLa~a~~vsql~~G~pI~I~S~~g~ 139 (659)
T PRK14867 115 GAAGVLLFSQITTGKPLKITTSTGD 139 (659)
T ss_pred cHHHHHHHHHHhcCCcEEEEEEcCC
Confidence 997543 446888999999754
No 18
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.73 E-value=1.3e-08 Score=111.12 Aligned_cols=89 Identities=22% Similarity=0.326 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------CCCCCc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-------~~~iG~ 179 (470)
..+.+|+.||||||+|| ||+.|.|.+. +.|...|+|.|||+||++.+.+-+....+++|-. ..+.|.
T Consensus 19 ~sl~sAVKELvENSiDA---GAT~I~I~~k---dyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~f~Dl~~l~T~GF 92 (672)
T KOG1978|consen 19 TSLVSAVKELVENSIDA---GATAIDIKVK---DYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVSFADLAVLFTLGF 92 (672)
T ss_pred ccHHHHHHHHHhcCccc---CCceeeEecC---CCCcceEEEecCCCCCCccchhhhhhhhhhhcccchhhhhhhhhhhh
Confidence 44556999999999999 9999999884 3477899999999999998887654456666664 234444
Q ss_pred ccccccccccccCCeEEEEeeeCC
Q 012137 180 YGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 180 fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
.|=-| +++---++++|.|++..
T Consensus 93 RGEAL--SsLCa~~dv~I~Trt~~ 114 (672)
T KOG1978|consen 93 RGEAL--SSLCALGDVMISTRSHS 114 (672)
T ss_pred HHHHH--HhhhhccceEEEEeecc
Confidence 44443 33333367888898863
No 19
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.72 E-value=1.6e-08 Score=112.31 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=84.7
Q ss_pred CcccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhC-CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHH--
Q 012137 87 GSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK-- 162 (470)
Q Consensus 87 ~~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~-gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~-- 162 (470)
..++|++.-| +|+-+.. ..-|..++.||||||+|+..+ .++.|.|.+.. + ..|+|.|||.||+.+....
T Consensus 17 ~~lE~VrkRP~mYiGs~~--~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---d--g~I~V~DnGrGIP~~~~~~~~ 89 (631)
T PRK05559 17 EGLEPVRKRPGMYIGSTD--TRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---D--GSVSVRDNGRGIPVGIHPEEG 89 (631)
T ss_pred cchHHHhcCCCceeCCCC--CchhhhhhhhhhccccchhhcCCCCEEEEEEeC---C--CcEEEEEcCCCCCcccccccC
Confidence 3789999999 6664433 367888999999999998754 48999998853 1 3799999999999998877
Q ss_pred ------hhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 163 ------CMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 163 ------~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
+|. +..++|.+ ..+.|.+|+|++ +.-.+...++|.|+..
T Consensus 90 ~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls-~vNalS~~l~V~s~r~ 139 (631)
T PRK05559 90 KSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVS-VVNALSSRLEVEVKRD 139 (631)
T ss_pred CcchheeeeeccccCccCCccccccCcccccchh-hhhhheeeEEEEEEeC
Confidence 675 46666654 356799999997 4555888899999974
No 20
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.64 E-value=1e-07 Score=102.44 Aligned_cols=97 Identities=24% Similarity=0.286 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHchhhhhhCCC--ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhh-cCcccccC--CCCCCcc
Q 012137 106 HKWAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQY 180 (470)
Q Consensus 106 H~w~f~AIaELIDNAiDA~~~gA--~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~-~G~S~K~~--~~~iG~f 180 (470)
...+.+++.|||+||+||..... ..|.|.+... ..+...|.|.|||.||+++++.++|. +.+++|.. ....|.+
T Consensus 26 ~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~ 104 (488)
T TIGR01052 26 IRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQ 104 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCc
Confidence 35566799999999999964211 2677776531 12345799999999999999999997 56677754 4566899
Q ss_pred ccccccc----ccccCCeEEEEeeeCC
Q 012137 181 GNGFKTS----TMRLGADVIVFSRATH 203 (470)
Q Consensus 181 GiGlK~A----s~~lg~~v~V~Sr~~~ 203 (470)
|+||.++ .+..|..+.|.|++.+
T Consensus 105 GlGLs~~~~isq~~~G~~i~V~S~~~g 131 (488)
T TIGR01052 105 GIGISGAVLYSQMTTGKPVKVISSTGG 131 (488)
T ss_pred cEehhHHHHHHHHcCCceEEEEEecCC
Confidence 9999753 2444666999999863
No 21
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.63 E-value=8.4e-08 Score=104.19 Aligned_cols=97 Identities=25% Similarity=0.398 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHchhhhhhCCC--ceEEEEEEEec-CCCCceEEEEeCCCCCCHHHHHHhhh-cCcccccC--CCCCCccc
Q 012137 108 WAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIM-KDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYG 181 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA--~~V~I~i~~~~-~~~~~~i~I~DnG~GM~~e~l~~~~~-~G~S~K~~--~~~iG~fG 181 (470)
.+..+|.|||+||+||...+. ..|.|.+.... .++...|.|.|||+||+++++.++|. +.+++|.. ....|.+|
T Consensus 36 ~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~G 115 (535)
T PRK04184 36 ALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQG 115 (535)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCC
Confidence 345699999999999964221 25777765321 23457899999999999999999997 45666654 35668999
Q ss_pred ccccccc----cccCCeEEEEeeeCCC
Q 012137 182 NGFKTST----MRLGADVIVFSRATHE 204 (470)
Q Consensus 182 iGlK~As----~~lg~~v~V~Sr~~~~ 204 (470)
+||..+. +..|..+.|.|++.++
T Consensus 116 LGLsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 116 IGISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred cchHHHHHHHHHhcCCcEEEEEecCCC
Confidence 9997542 3346779999998543
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.56 E-value=8.9e-08 Score=106.19 Aligned_cols=106 Identities=22% Similarity=0.261 Sum_probs=82.5
Q ss_pred CcccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhC-CCceEEEEEEEecCCCCceEEEEeCCCCCCHHH-----
Q 012137 87 GSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPES----- 159 (470)
Q Consensus 87 ~~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~-gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~----- 159 (470)
..+++++.-| +|+-+.. |..+|.||||||+|...+ +|+.|.|.+.. + ..|+|.|||.||+.+.
T Consensus 13 ~gle~VRkRPgMYigs~~-----~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~----d-~~I~V~DnGrGIp~~~h~~~g 82 (625)
T TIGR01055 13 DGLEPVRKRPGMYTDTTR-----PNHLVQEVIDNSVDEALAGFASIIMVILHQ----D-QSIEVFDNGRGMPVDIHPKEG 82 (625)
T ss_pred cccHHhhcCCCCeeCCCC-----cceeehhhhhcccchhhcCCCCEEEEEEeC----C-CeEEEEecCCccCcccccccC
Confidence 3888999988 7774432 345999999999995443 58999998852 2 5799999999999988
Q ss_pred ---HHHhh-hcCcccccC----CCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 160 ---LRKCM-SLGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 160 ---l~~~~-~~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
++-+| .+..++|.+ ..+.|.+|+|++ +.-++...++|.|+..+
T Consensus 83 ~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls-~vnalS~~l~v~~~r~g 133 (625)
T TIGR01055 83 VSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGIS-VVNALSKRVKIKVYRQG 133 (625)
T ss_pred CcHHHHhhhcccccCCCCCCcceecCCCcchhHH-HHHHhcCeEEEEEEECC
Confidence 77788 466667765 346799999997 45568888999999753
No 23
>PRK09303 adaptive-response sensory kinase; Validated
Probab=98.50 E-value=4.9e-07 Score=93.92 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc-
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT- 186 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~- 186 (470)
.+..++.|||+||+++...+ ..|.|.+.. ..++...|.|.|||+||+++.+.++|..+++.+.. ..-+.+|+||..
T Consensus 272 ~l~qvl~NLl~NAik~~~~~-~~I~i~~~~-~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~-~~~~G~GLGL~i~ 348 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTPEG-GTITLSMLH-RTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRD-EGTEGYGIGLSVC 348 (380)
T ss_pred HHHHHHHHHHHHHHhcCCCC-ceEEEEEEe-cCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCCC-CCCCcccccHHHH
Confidence 45569999999999995332 456666532 23345789999999999999999999988876653 223458999853
Q ss_pred --cccccCCeEEEEeeeCCC
Q 012137 187 --STMRLGADVIVFSRATHE 204 (470)
Q Consensus 187 --As~~lg~~v~V~Sr~~~~ 204 (470)
..-.+|+++.|.|...+|
T Consensus 349 ~~iv~~~gG~i~v~s~~~~G 368 (380)
T PRK09303 349 RRIVRVHYGQIWVDSEPGQG 368 (380)
T ss_pred HHHHHHcCCEEEEEecCCCc
Confidence 356799999999987544
No 24
>PRK10604 sensor protein RstB; Provisional
Probab=98.48 E-value=5.6e-07 Score=94.79 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK 185 (470)
.++-.++.|||+||+.+ +...|.|.+.. .++...|.|.|||.||+++++.++|.++++.... ...-|.+|+||.
T Consensus 318 ~~l~~vl~NLl~NAik~---~~~~I~I~~~~--~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ 392 (433)
T PRK10604 318 RLMERVLDNLLNNALRY---AHSRVRVSLLL--DGNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHHHh---CCCeEEEEEEE--ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHH
Confidence 45666999999999998 45677777754 3456789999999999999999999988765443 223356899985
Q ss_pred ---ccccccCCeEEEEeeeCC
Q 012137 186 ---TSTMRLGADVIVFSRATH 203 (470)
Q Consensus 186 ---~As~~lg~~v~V~Sr~~~ 203 (470)
...-.+|.++.+.+...+
T Consensus 393 ivk~i~~~~gG~i~v~s~~~~ 413 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESELG 413 (433)
T ss_pred HHHHHHHHCCCEEEEEecCCC
Confidence 345678999999988643
No 25
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=98.45 E-value=6.3e-07 Score=93.02 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=69.3
Q ss_pred HHHHHHHHHHchhhhhhCCC---ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 109 AFGAIAELLDNAVDEVQNGA---TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gA---~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
+-.++.||+.||+++...+. ..|.|... ..++...|+|.|||.||+++.+.++|.++++.|... ...-|+||.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~--~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--~~G~GlGL~ 463 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTA--LNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS--RKHIGMGLS 463 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEE--ecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC--CCCCcccHH
Confidence 45699999999999964331 34555543 345678899999999999999999999888877542 334688885
Q ss_pred c---cccccCCeEEEEeeeCCC
Q 012137 186 T---STMRLGADVIVFSRATHE 204 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~~~ 204 (470)
. ..-.+|+++.|.|...+|
T Consensus 464 i~~~iv~~~gG~i~~~s~~~~G 485 (494)
T TIGR02938 464 VAQEIVADHGGIIDLDDDYSEG 485 (494)
T ss_pred HHHHHHHHcCCEEEEEECCCCC
Confidence 3 345689999999987543
No 26
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.44 E-value=2.9e-07 Score=102.36 Aligned_cols=108 Identities=21% Similarity=0.296 Sum_probs=77.9
Q ss_pred CcccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhCC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHHH----
Q 012137 87 GSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL---- 160 (470)
Q Consensus 87 ~~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l---- 160 (470)
..++|++.-| +|+-|... .-+..++.||||||+|...+| |+.|.|.+.. ++ .|+|.|||.||+.+.-
T Consensus 17 ~~lE~Vr~RPgMYiGs~~~--~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~k 89 (638)
T PRK05644 17 EGLEAVRKRPGMYIGSTGE--RGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---DG--SITVTDNGRGIPVDIHPKTG 89 (638)
T ss_pred cchHHHhcCCCceECCCCh--hhHHhhhHHhhhcccccccCCCCCEEEEEEeC---CC--cEEEEEeCccccCCccCCCC
Confidence 3788999999 67754332 344558899999999954447 8999998852 22 8999999999998632
Q ss_pred ----HHhhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 161 ----RKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 161 ----~~~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
+.+|. +..++|.+ ..+.|..|+|++ +.-.++..++|.|+..
T Consensus 90 i~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls-~vnalS~~~~v~t~r~ 139 (638)
T PRK05644 90 KPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVS-VVNALSTWLEVEVKRD 139 (638)
T ss_pred CCchHHheeeecccCccCCCcccccCCccccchh-hhhheeceEEEEEEeC
Confidence 22444 33444444 347799999997 4555888899999975
No 27
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=98.42 E-value=7.8e-07 Score=93.20 Aligned_cols=94 Identities=21% Similarity=0.282 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK 185 (470)
..+..++.||++||+++... ...|.|.+.. .++...|.|.|||+||+++.+.++|.++++.+.. ....+..|+||.
T Consensus 316 ~~l~~vl~NLl~NAik~~~~-~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ 392 (430)
T PRK11006 316 DQLRSAISNLVYNAVNHTPE-GTHITVRWQR--VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA 392 (430)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCeEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHH
Confidence 45677999999999999532 2457776653 3456789999999999999999999988865543 223355799985
Q ss_pred c---cccccCCeEEEEeeeCC
Q 012137 186 T---STMRLGADVIVFSRATH 203 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~~ 203 (470)
. ..-.+|+++.+.|...+
T Consensus 393 ivk~iv~~~gG~i~i~s~~~~ 413 (430)
T PRK11006 393 IVKHALSHHDSRLEIESEVGK 413 (430)
T ss_pred HHHHHHHHCCCEEEEEecCCC
Confidence 3 35678999999988643
No 28
>PRK10364 sensor protein ZraS; Provisional
Probab=98.41 E-value=8.6e-07 Score=93.48 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 106 HKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 106 H~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
...+..++.|||+||++|... ...|.|.+.. .++...|.|.|||+||+++.+.++|+.|+++|.. ..|+||.
T Consensus 346 ~~~l~~il~NLl~NA~k~~~~-~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~-----g~GlGL~ 417 (457)
T PRK10364 346 PDRLTQVLLNLYLNAIQAIGQ-HGVISVTASE--SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKAE-----GTGLGLA 417 (457)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CCeEEEEEEE--eCCeEEEEEEECCCCCCHHHHHHHhCccccCCCC-----CCcccHH
Confidence 356778999999999999532 4567777754 3456889999999999999999999999887743 3688886
Q ss_pred c---cccccCCeEEEEeeeCC
Q 012137 186 T---STMRLGADVIVFSRATH 203 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~~ 203 (470)
. ..-.+|.++.+.|...+
T Consensus 418 iv~~~v~~~gG~i~i~s~~~~ 438 (457)
T PRK10364 418 VVHNIVEQHGGTIQVASQEGK 438 (457)
T ss_pred HHHHHHHHCCCEEEEEeCCCC
Confidence 3 35668999999887643
No 29
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.2e-07 Score=96.97 Aligned_cols=91 Identities=25% Similarity=0.437 Sum_probs=68.9
Q ss_pred HHHHHHHchhhhhhC-----------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhh-cCccccc-------
Q 012137 112 AIAELLDNAVDEVQN-----------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK------- 172 (470)
Q Consensus 112 AIaELIDNAiDA~~~-----------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~-~G~S~K~------- 172 (470)
-+.|||-||-||... ..+...|.+. ++.....|+|.|+|.||+.++|.+.+. ...|...
T Consensus 61 FlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~--~nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealk 138 (656)
T KOG0019|consen 61 FLRELISNASDALEKLRYLELKGDEKALPELEIRII--TNKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALK 138 (656)
T ss_pred HHHhhhccccchHHHHHHHhhcCccccccceeEEec--cCCCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHH
Confidence 389999999999631 1245566665 455778999999999999999988765 3333211
Q ss_pred ----CCCCCCcccccccccccccCCeEEEEeeeCCCC
Q 012137 173 ----ANKTIGQYGNGFKTSTMRLGADVIVFSRATHES 205 (470)
Q Consensus 173 ----~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~~~ 205 (470)
+.+.||+||+||++|.+ .+.+|.|+||..++.
T Consensus 139 ea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e 174 (656)
T KOG0019|consen 139 EAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE 174 (656)
T ss_pred hcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc
Confidence 14578999999997766 999999999987543
No 30
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=98.36 E-value=1.7e-06 Score=92.99 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHchhhhhh---CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccc
Q 012137 108 WAFGAIAELLDNAVDEVQ---NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF 184 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~---~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGl 184 (470)
.+.+++.||++||++|.. .+...|.|.+.. .++...|.|.|||+||+++.+.++|+.|+++|... .|..|+||
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~--~~g~GlGL 507 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD--EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE--PGEHGIGL 507 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE--CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC--CCCceeCH
Confidence 455689999999999963 234567776653 44567899999999999999999999999877542 24479998
Q ss_pred cc---cccccCCeEEEEeeeCC
Q 012137 185 KT---STMRLGADVIVFSRATH 203 (470)
Q Consensus 185 K~---As~~lg~~v~V~Sr~~~ 203 (470)
.. ..-.+|+++.|.|....
T Consensus 508 ~ivk~iv~~~~G~i~v~s~~~~ 529 (545)
T PRK15053 508 YLIASYVTRCGGVITLEDNDPC 529 (545)
T ss_pred HHHHHHHHHcCCEEEEEECCCC
Confidence 53 34568999999988643
No 31
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=98.33 E-value=1.6e-06 Score=89.89 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK 185 (470)
..+..++.|||+||+++... ...|.|.+.. .++...|+|.|||.||+++.+.++|..+|+.+.. ...-+..|+||.
T Consensus 352 ~~l~~~~~nll~Nai~~~~~-~~~I~i~~~~--~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~ 428 (457)
T TIGR01386 352 QMFRRAISNLLSNALRHTPD-GGTITVRIER--RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLA 428 (457)
T ss_pred HHHHHHHHHHHHHHHHcCCC-CceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHH
Confidence 45667999999999998422 2567777754 4456789999999999999999999988876654 222345899986
Q ss_pred cc---ccccCCeEEEEeeeC
Q 012137 186 TS---TMRLGADVIVFSRAT 202 (470)
Q Consensus 186 ~A---s~~lg~~v~V~Sr~~ 202 (470)
.+ .-++|.++.+.+ ..
T Consensus 429 i~~~~~~~~~G~~~~~~-~~ 447 (457)
T TIGR01386 429 IVRSIMEAHGGRASAES-PD 447 (457)
T ss_pred HHHHHHHHCCCEEEEEe-CC
Confidence 43 456899999998 53
No 32
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=98.32 E-value=2e-06 Score=89.31 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
.++..++.|||+||+.+ +...|.|.... .++...|+|.|||.||+++++.++|++++........ +.+|+||..
T Consensus 330 ~~l~~il~NLl~NA~k~---~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~~~-~g~GlGL~i 403 (435)
T PRK09467 330 IAIKRALANLVVNAARY---GNGWIKVSSGT--EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSARGS-SGTGLGLAI 403 (435)
T ss_pred HHHHHHHHHHHHHHHHh---CCCeEEEEEEe--cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCCCCCC-CCeehhHHH
Confidence 45667999999999998 56677777754 3456789999999999999999999988764333222 458999853
Q ss_pred ---cccccCCeEEEEeeeCC
Q 012137 187 ---STMRLGADVIVFSRATH 203 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~~ 203 (470)
..-.+|.++.+.+...+
T Consensus 404 v~~i~~~~~g~l~i~~~~~~ 423 (435)
T PRK09467 404 VKRIVDQHNGKVELGNSEEG 423 (435)
T ss_pred HHHHHHHCCCEEEEEECCCC
Confidence 24457899999887643
No 33
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=98.31 E-value=1.9e-06 Score=89.70 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK 185 (470)
.++..++.|||+||+.+ +...|.|.+.. .++...|+|.|||.||+++.+.++|..+++.+.. ...-+.+|+||.
T Consensus 352 ~~l~~~l~nli~NA~~~---~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~ 426 (461)
T PRK09470 352 NALASALENIVRNALRY---SHTKIEVAFSV--DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHHHh---CCCcEEEEEEE--ECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHH
Confidence 45666899999999999 45667777654 3456789999999999999999999987765433 223356899986
Q ss_pred cc---ccccCCeEEEEeeeCC
Q 012137 186 TS---TMRLGADVIVFSRATH 203 (470)
Q Consensus 186 ~A---s~~lg~~v~V~Sr~~~ 203 (470)
.+ ...+|+++.+.|...+
T Consensus 427 iv~~~v~~~~G~l~~~s~~~~ 447 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDSPLG 447 (461)
T ss_pred HHHHHHHHCCCEEEEEECCCC
Confidence 42 4568999999988754
No 34
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=98.31 E-value=2e-06 Score=90.02 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK 185 (470)
..+..++.|||+||+.+... ...|.|.+.. .++...|.|.|||.||+++++.++|..+++.+.. ....|..|+||.
T Consensus 351 ~~l~qvl~nll~NAi~~~~~-~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~ 427 (466)
T PRK10549 351 DRLMQLFNNLLENSLRYTDS-GGSLHISAEQ--RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLA 427 (466)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCEEEEEEEE--cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHH
Confidence 45667999999999998532 2467777654 4466789999999999999999999988766543 233456899986
Q ss_pred c---cccccCCeEEEEeeeCC
Q 012137 186 T---STMRLGADVIVFSRATH 203 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~~ 203 (470)
. ...++|.++.+.+...+
T Consensus 428 iv~~i~~~~~G~l~~~s~~~~ 448 (466)
T PRK10549 428 ICLNIVEAHNGRIIAAHSPFG 448 (466)
T ss_pred HHHHHHHHcCCEEEEEECCCC
Confidence 4 35668999999988643
No 35
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.31 E-value=9.3e-07 Score=98.75 Aligned_cols=108 Identities=21% Similarity=0.268 Sum_probs=76.4
Q ss_pred CcccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhCC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHH-----
Q 012137 87 GSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES----- 159 (470)
Q Consensus 87 ~~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~----- 159 (470)
..++|++.-| +|+-+... .-+..++.||||||+|...+| ++.|.|.+.. ++ .|+|.|||.||+.+.
T Consensus 10 ~~lE~vr~RP~mYiGs~~~--~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~k 82 (654)
T TIGR01059 10 EGLEAVRKRPGMYIGSTGE--TGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---DG--SVTVEDNGRGIPVDIHPEEG 82 (654)
T ss_pred cchHHHhcCCCceeCCCCc--chHHhhhHHhhhccccccccCCCCEEEEEEeC---CC--cEEEEEeCCCcCccccCcCC
Confidence 3778888888 56644332 344558999999999944447 8999998852 22 499999999999863
Q ss_pred ---HHHhhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 160 ---LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 160 ---l~~~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
.+.+|. +..++|.+ ..+.|..|.|++ +.-+++..++|.|+..
T Consensus 83 i~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~-~inalS~~l~v~~~~~ 132 (654)
T TIGR01059 83 ISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVS-VVNALSEWLEVTVFRD 132 (654)
T ss_pred CCchHHheeeecccCccCCCcceecCCccchhHH-HHHHhcCeEEEEEEEC
Confidence 122343 33444443 356799999997 4556888899999974
No 36
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=98.31 E-value=1e-06 Score=96.12 Aligned_cols=108 Identities=21% Similarity=0.256 Sum_probs=77.0
Q ss_pred cccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhCC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHH------
Q 012137 88 SLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES------ 159 (470)
Q Consensus 88 ~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~------ 159 (470)
.+++++.-| +|+-|... -.-+...+.|.||||+|.+.+| ++.|.|.+. ....|+|.|||.|||-+.
T Consensus 16 GLEaVRkRPGMYIGst~~-~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~-----~d~sisV~DnGRGIPvdiH~~~~~ 89 (635)
T COG0187 16 GLEAVRKRPGMYIGSTGD-GRGLHHLVWEVVDNSIDEALAGYADRIDVTLH-----EDGSISVEDNGRGIPVDIHPKEKV 89 (635)
T ss_pred CcHHhhcCCCceeccCCC-CCcceeeEeEeeechHhHHhhCcCcEEEEEEc-----CCCeEEEEECCCCCccccCCCCCC
Confidence 778888888 66643221 0233346889999999987544 788888875 345799999999999876
Q ss_pred --HHHhhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 160 --LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 160 --l~~~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
++-+|. +....|.+ .-+-|.+|+|.+ +.-+|...+.|.++..
T Consensus 90 ~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~S-VVNALS~~l~v~v~r~ 138 (635)
T COG0187 90 SAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVS-VVNALSTWLEVEVKRD 138 (635)
T ss_pred CceEEEEEeeccCcccCCCccEeecCCCccceE-EEecccceEEEEEEEC
Confidence 344555 44444444 335599999975 6778999999998885
No 37
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=98.31 E-value=2.8e-06 Score=90.43 Aligned_cols=88 Identities=25% Similarity=0.350 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHchhhhhhC-CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 108 WAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~-gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
.+..++.||++||++|... ....|.|.+.. .++...|.|.|||+||+++.+.++|..++++|.. ..|+||..
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~--~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~-----g~GlGL~i 505 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHY--RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGS-----NRGVGLYL 505 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCC-----CCcCcHHH
Confidence 3556899999999999642 23567777654 4466789999999999999999999999987753 25888853
Q ss_pred ---cccccCCeEEEEeeeC
Q 012137 187 ---STMRLGADVIVFSRAT 202 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~ 202 (470)
..-.+|+++.+.|...
T Consensus 506 v~~iv~~~~G~i~v~s~~~ 524 (542)
T PRK11086 506 VKQSVENLGGSIAVESEPG 524 (542)
T ss_pred HHHHHHHcCCEEEEEeCCC
Confidence 3567899999998764
No 38
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=98.30 E-value=1.8e-06 Score=93.67 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=67.6
Q ss_pred HHHHHHHHchhhhhhC-CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc---
Q 012137 111 GAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT--- 186 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~-gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~--- 186 (470)
+++-|||.||+||... ....|+|.... .++...|.|.|||+||.++.+.++|.+++++|...+. -|+||..
T Consensus 500 QVLvNLl~NALDA~~~~~~~~i~i~~~~--~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~~G---LGLGLaIS~~ 574 (603)
T COG4191 500 QVLVNLLQNALDAMAGQEDRRLSIRAQR--EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGKG---LGLGLAISQN 574 (603)
T ss_pred HHHHHHHHHHHHHhcCCCCCeeEEEEEe--cCCeEEEEEccCCCCCCHHHHHhhcCCccccCcccCC---cchhHHHHHH
Confidence 4999999999999852 23577777754 5677899999999999999999999999999964221 3445432
Q ss_pred cccccCCeEEEEeeeCCC
Q 012137 187 STMRLGADVIVFSRATHE 204 (470)
Q Consensus 187 As~~lg~~v~V~Sr~~~~ 204 (470)
..-.+|+++.|.+-..+|
T Consensus 575 i~~d~GGsL~v~n~~~~G 592 (603)
T COG4191 575 IARDLGGSLEVANHPEGG 592 (603)
T ss_pred HHHHhCCeEEeecCCCCc
Confidence 235579999998665443
No 39
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.28 E-value=2.1e-06 Score=82.71 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
.|.-.++.|||+||++|.. ...|.|.+.. .++...|.|.|||+||+++.+.++|.++++++.... ..|+||..
T Consensus 227 ~~l~~vl~nLi~NAi~~~~--~~~i~i~~~~--~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~---g~GlGL~i 299 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP--GGEITISVRQ--DDEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS---GTGLGLAI 299 (336)
T ss_pred HHHHHHHHHHHHHHhccCC--CCeEEEEEEe--cCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC---CCCccHHH
Confidence 5666699999999999943 4778887764 223588999999999999999999999998887633 36888753
Q ss_pred c---ccccCCeEEEEeee
Q 012137 187 S---TMRLGADVIVFSRA 201 (470)
Q Consensus 187 A---s~~lg~~v~V~Sr~ 201 (470)
+ .-..|+.+.+.|..
T Consensus 300 ~~~~~~~~~g~i~~~~~~ 317 (336)
T COG0642 300 VKRIVELHGGTISVESEP 317 (336)
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 2 45567778888876
No 40
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=98.25 E-value=3e-06 Score=86.07 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 106 HKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 106 H~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
..|+-.++.|||+||+.+... ...|.|.+.. .++...|.|.|||.||+++++.++|..++..+.. -+..|+||.
T Consensus 245 ~~~l~~il~nLi~NA~k~~~~-~~~I~I~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GlGL~ 318 (356)
T PRK10755 245 ATLLRLLLRNLVENAHRYSPE-GSTITIKLSQ--EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDSR---YGGIGLGLS 318 (356)
T ss_pred HHHHHHHHHHHHHHHHhhCCC-CCcEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCCC---CCCcCHHHH
Confidence 467888999999999998532 3567777643 4466889999999999999999999987754322 234799986
Q ss_pred c---cccccCCeEEEEeeeC
Q 012137 186 T---STMRLGADVIVFSRAT 202 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~ 202 (470)
. ..-.+|..+.+.|...
T Consensus 319 i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 319 IVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHCCCEEEEEECCC
Confidence 4 3456899999999875
No 41
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.2e-06 Score=92.67 Aligned_cols=93 Identities=27% Similarity=0.409 Sum_probs=67.4
Q ss_pred HHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhh-cCccccc-----
Q 012137 112 AIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK----- 172 (470)
Q Consensus 112 AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~-~G~S~K~----- 172 (470)
.+.|||.||-||... +...+.|.|.. +..+..|.|.|.|.||+.++|.+.+. ...|.-.
T Consensus 99 FLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~--Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~K 176 (785)
T KOG0020|consen 99 FLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKA--DKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEK 176 (785)
T ss_pred HHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEee--chhhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHH
Confidence 489999999999631 12345666654 34677899999999999999887654 3322111
Q ss_pred -------C---CCCCCcccccccccccccCCeEEEEeeeCCCCCc
Q 012137 173 -------A---NKTIGQYGNGFKTSTMRLGADVIVFSRATHESKS 207 (470)
Q Consensus 173 -------~---~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~~~~~ 207 (470)
. ..-||+||+||.+|.+ .++++.|.|+.+++..+
T Consensus 177 m~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD~Qy 220 (785)
T KOG0020|consen 177 MQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDDSQY 220 (785)
T ss_pred hhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCccce
Confidence 1 3468999999996554 99999999999876543
No 42
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.23 E-value=1.6e-06 Score=97.87 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=77.2
Q ss_pred cccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhCC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHH------
Q 012137 88 SLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES------ 159 (470)
Q Consensus 88 ~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~------ 159 (470)
.+++++.-| +|+-+.... .-+..++.||||||+|...+| ++.|.|.+.. + ..|+|.|||.|||.+.
T Consensus 17 gle~VRkRPgMYIGst~~~-~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~---d--gsIsV~DnGrGIPvd~h~~~g~ 90 (756)
T PRK14939 17 GLDAVRKRPGMYIGDTDDG-TGLHHMVYEVVDNAIDEALAGHCDDITVTIHA---D--GSVSVSDNGRGIPTDIHPEEGV 90 (756)
T ss_pred ccHHHhcCCCCeeCCCCCC-cchhhhhhHhhcccccccccCCCCEEEEEEcC---C--CeEEEEEcCCcccCCcccccCC
Confidence 788999988 777543220 234458999999999954446 8999998852 2 3899999999999971
Q ss_pred --HHHhh-hcCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 160 --LRKCM-SLGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 160 --l~~~~-~~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
++-+| .+..++|.+ .-+.|.+|+|++ +.-++...++|.|+..
T Consensus 91 ~~~Elvlt~lhAggKfd~~~ykvSgGlhGvG~s-vvNAlS~~l~v~v~r~ 139 (756)
T PRK14939 91 SAAEVIMTVLHAGGKFDQNSYKVSGGLHGVGVS-VVNALSEWLELTIRRD 139 (756)
T ss_pred chhhheeeeecccCCCCCCcccccCCccCccce-EeehccCeEEEEEEeC
Confidence 11223 344555544 336799999986 5666899999999874
No 43
>PRK10815 sensor protein PhoQ; Provisional
Probab=98.22 E-value=4.3e-06 Score=89.99 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc-
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT- 186 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~- 186 (470)
....++.|||+||+++. ...+.|.+.. .++...|.|.|||+||+++.+.++|..+++.+... +.+|+||..
T Consensus 378 ~l~~vl~NLi~NAik~~---~~~i~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~~---~G~GLGL~Iv 449 (485)
T PRK10815 378 DFMEVMGNVLDNACKYC---LEFVEISARQ--TDEHLHIVVEDDGPGIPESKRELIFDRGQRADTLR---PGQGLGLSVA 449 (485)
T ss_pred HHHHHHHHHHHHHHHhc---CCcEEEEEEE--eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCC---CCcchhHHHH
Confidence 45669999999999994 4456666643 34567899999999999999999999877544322 347999864
Q ss_pred --cccccCCeEEEEeeeCCC
Q 012137 187 --STMRLGADVIVFSRATHE 204 (470)
Q Consensus 187 --As~~lg~~v~V~Sr~~~~ 204 (470)
..-.+|.++.+.|...+|
T Consensus 450 k~iv~~~gG~i~v~s~~~~G 469 (485)
T PRK10815 450 REITEQYEGKISAGDSPLGG 469 (485)
T ss_pred HHHHHHcCCEEEEEECCCCE
Confidence 346789999999887543
No 44
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=98.20 E-value=5.5e-06 Score=81.44 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK 185 (470)
..+..++.+||.||+++... ...|.|.+.. .++...|.|.|||.||+++.+.++|.++++.+.. ....+..|+||.
T Consensus 228 ~~l~~vl~nll~Nai~~~~~-~~~i~i~~~~--~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~ 304 (333)
T TIGR02966 228 DELRSAFSNLVSNAIKYTPE-GGTITVRWRR--DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLA 304 (333)
T ss_pred HHHHHHHHHHHHHhheeCCC-CCeEEEEEEE--cCCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHH
Confidence 45677999999999998432 3456676643 3456789999999999999999999977754432 222234688986
Q ss_pred c---cccccCCeEEEEeeeCC
Q 012137 186 T---STMRLGADVIVFSRATH 203 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~~ 203 (470)
. ..-.+|+++.+.|....
T Consensus 305 ~~~~~~~~~gG~i~~~s~~~~ 325 (333)
T TIGR02966 305 IVKHVLSRHHARLEIESELGK 325 (333)
T ss_pred HHHHHHHHCCCEEEEEecCCC
Confidence 4 34558999999988643
No 45
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=98.20 E-value=5.3e-06 Score=86.34 Aligned_cols=95 Identities=21% Similarity=0.204 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 106 HKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 106 H~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
..++..++.|||.||+.+.. +...|.|.+.. .++...|+|.|||.||+++++.++|+.+++.+.....-+..|+||.
T Consensus 366 ~~~l~~vl~nli~Na~~~~~-~~~~i~i~~~~--~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~ 442 (475)
T PRK11100 366 PFLLRQALGNLLDNAIDFSP-EGGTITLSAEV--DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLA 442 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHH
Confidence 45788899999999999842 23577787754 4467889999999999999999999988765442222244789986
Q ss_pred c---cccccCCeEEEEeeeCC
Q 012137 186 T---STMRLGADVIVFSRATH 203 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~~ 203 (470)
. -...+|..+.+.|...+
T Consensus 443 i~~~~~~~~~G~i~i~s~~~~ 463 (475)
T PRK11100 443 FVREVARLHGGEVTLRNRPEG 463 (475)
T ss_pred HHHHHHHHCCCEEEEEEcCCC
Confidence 4 24568999999987643
No 46
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=98.17 E-value=6.3e-06 Score=94.11 Aligned_cols=91 Identities=20% Similarity=0.171 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEe-------------cCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNI-------------MKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA 173 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~-------------~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~ 173 (470)
..+..++.|||+||+++... ...|.|.+... ..++...|.|.|||+||+++.+.++|.++++++.
T Consensus 559 ~~L~qvl~NLl~NAik~~~~-~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~- 636 (828)
T PRK13837 559 AELQQVLMNLCSNAAQAMDG-AGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHHccc-CCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC-
Confidence 45677999999999998642 35677766543 1244578999999999999999999998887664
Q ss_pred CCCCCcccccccc---cccccCCeEEEEeeeCC
Q 012137 174 NKTIGQYGNGFKT---STMRLGADVIVFSRATH 203 (470)
Q Consensus 174 ~~~iG~fGiGlK~---As~~lg~~v~V~Sr~~~ 203 (470)
+..|+||.. ..-.+|+++.|.|...+
T Consensus 637 ----~G~GLGL~i~~~iv~~~gG~i~v~s~~g~ 665 (828)
T PRK13837 637 ----GGTGLGLATVHGIVSAHAGYIDVQSTVGR 665 (828)
T ss_pred ----CCCcchHHHHHHHHHHCCCEEEEEecCCC
Confidence 447899853 35678999999998643
No 47
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.16 E-value=7e-06 Score=94.77 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecC-CCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMK-DNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~-~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
..+-.++.|||.||+++... ..|.|.+..... ++...|.|.|+|+||+++.+.++|.++++.+.....-+..|+||.
T Consensus 564 ~~L~QVL~NLL~NAik~t~~--G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLa 641 (894)
T PRK10618 564 DALRKILLLLLNYAITTTAY--GKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFF 641 (894)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHH
Confidence 34556999999999998633 356666543222 245789999999999999999999988876654222234788875
Q ss_pred c---cccccCCeEEEEeeeCCC
Q 012137 186 T---STMRLGADVIVFSRATHE 204 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~~~ 204 (470)
. ..-.+|+++.|.|+...|
T Consensus 642 I~k~Lve~~GG~I~v~S~~g~G 663 (894)
T PRK10618 642 LCNQLCRKLGGHLTIKSREGLG 663 (894)
T ss_pred HHHHHHHHcCCEEEEEECCCCc
Confidence 3 345689999999987544
No 48
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=98.11 E-value=9.2e-06 Score=91.60 Aligned_cols=95 Identities=22% Similarity=0.227 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC--CCCCCcccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA--NKTIGQYGNGF 184 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~--~~~iG~fGiGl 184 (470)
..+..++.|||+||+++.. ...|.|.+... .++...|.|.|||+||+++.+.++|.++++.|.. ....+..|+||
T Consensus 397 ~~l~qvl~NLl~NAik~~~--~g~v~i~~~~~-~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 397 TRLRQILWNLISNAVKFTQ--QGGVTVRVRYE-EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCcEEEEEEEc-cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 4566799999999999963 34566666542 2455789999999999999999999988877533 22235578888
Q ss_pred cc---cccccCCeEEEEeeeCCC
Q 012137 185 KT---STMRLGADVIVFSRATHE 204 (470)
Q Consensus 185 K~---As~~lg~~v~V~Sr~~~~ 204 (470)
.. ..-.+|+++.|.|....|
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~g~G 496 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEEGKG 496 (779)
T ss_pred HHHHHHHHHcCCEEEEEecCCCe
Confidence 53 345689999999987543
No 49
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.11 E-value=2.1e-06 Score=94.95 Aligned_cols=85 Identities=26% Similarity=0.272 Sum_probs=63.0
Q ss_pred HHHHHHHchhhhhhCC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHH--------Hhhh-cCcccccC----CCCC
Q 012137 112 AIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA----NKTI 177 (470)
Q Consensus 112 AIaELIDNAiDA~~~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~--------~~~~-~G~S~K~~----~~~i 177 (470)
++.||||||+|+..++ |+.|.|.+.. ++ .|+|.|||.||+.+... .+|. +..++|.+ ..+.
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~ 79 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDK---DN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSG 79 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeC---CC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccC
Confidence 6889999999996443 8999998853 22 89999999999975432 2233 33334443 3477
Q ss_pred CcccccccccccccCCeEEEEeeeC
Q 012137 178 GQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 178 G~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
|.+|+|++ +.-++...++|.|+..
T Consensus 80 G~~G~Gls-~vnalS~~l~v~~~~~ 103 (594)
T smart00433 80 GLHGVGAS-VVNALSTEFEVEVARD 103 (594)
T ss_pred CcccchHH-HHHHhcCceEEEEEeC
Confidence 99999997 4556889999999985
No 50
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=98.10 E-value=9.2e-06 Score=92.64 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
.++..++.|||+||+++.. ...|.|.+.. .++...|+|.|||+||+++.+.++|.++++.+.. .+..|+||..
T Consensus 512 ~~l~~il~NLl~NAik~~~--~g~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i 584 (921)
T PRK15347 512 LRLRQILVNLLGNAVKFTE--TGGIRLRVKR--HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH---SQGTGLGLTI 584 (921)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCCEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC---CCCCchHHHH
Confidence 4567799999999999953 3457777654 3467889999999999999999999988765533 2457999863
Q ss_pred ---cccccCCeEEEEeeeCCC
Q 012137 187 ---STMRLGADVIVFSRATHE 204 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~~~ 204 (470)
..-.+|+++.|.|....|
T Consensus 585 ~~~~~~~~gG~i~i~s~~~~G 605 (921)
T PRK15347 585 ASSLAKMMGGELTLFSTPGVG 605 (921)
T ss_pred HHHHHHHcCCEEEEEecCCCc
Confidence 345689999998887443
No 51
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=98.06 E-value=2.4e-05 Score=63.69 Aligned_cols=90 Identities=23% Similarity=0.323 Sum_probs=64.6
Q ss_pred HHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc--
Q 012137 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT-- 186 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~-- 186 (470)
+..++.||++||+++... ...|.|.+.. .++...+.|.|+|.||+++.+.+++..+++.+......+.+|+||+.
T Consensus 6 l~~~~~~l~~n~~~~~~~-~~~v~i~~~~--~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~gl~~~~ 82 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPE-GGRITVTLER--DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRSRKIGGTGLGLSIVK 82 (111)
T ss_pred HHHHHHHHHHHHHhcCCC-CCeEEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCCCCCCCcccccHHHHH
Confidence 455899999999998422 2467776653 44568899999999999999999988776655332334568999864
Q ss_pred -cccccCCeEEEEeee
Q 012137 187 -STMRLGADVIVFSRA 201 (470)
Q Consensus 187 -As~~lg~~v~V~Sr~ 201 (470)
....++.++.+.+..
T Consensus 83 ~~~~~~~g~~~~~~~~ 98 (111)
T smart00387 83 KLVELHGGEISVESEP 98 (111)
T ss_pred HHHHHcCCEEEEEecC
Confidence 345577777776553
No 52
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=98.06 E-value=1e-05 Score=90.38 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHH-HHHhhhcCcccccCCCCCCcccccccc
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPES-LRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~-l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
....++.|||+||+++... ...|.|.+.. .++...|+|.|||+||+++. .+++|++++++|. +..|+||..
T Consensus 579 ~l~~vl~nLl~NAik~~~~-~~~I~I~~~~--~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-----~G~GLGL~i 650 (679)
T TIGR02916 579 RLERVLGHLVQNALEATPG-EGRVAIRVER--ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-----AGMGIGVYE 650 (679)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCcEEEEEEE--cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-----CCcchhHHH
Confidence 4556899999999999532 3467777754 34678899999999999999 7889998888775 336888864
Q ss_pred c---ccccCCeEEEEeeeCC
Q 012137 187 S---TMRLGADVIVFSRATH 203 (470)
Q Consensus 187 A---s~~lg~~v~V~Sr~~~ 203 (470)
+ .-.+|.++.+.|...+
T Consensus 651 ~~~iv~~~gG~i~v~s~~g~ 670 (679)
T TIGR02916 651 CRQYVEEIGGRIEVESTPGQ 670 (679)
T ss_pred HHHHHHHcCCEEEEEecCCC
Confidence 3 4568999999998643
No 53
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=98.06 E-value=1.4e-05 Score=84.88 Aligned_cols=88 Identities=24% Similarity=0.303 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCC-ceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNS-PALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~-~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
..+..++.||++||+.+... ...|.|.+.. ..+. ..|.|.|||+||+++.+.++|.++++++.. ..|+||.
T Consensus 499 ~~l~~~~~nli~na~~~~~~-~~~i~v~~~~--~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~-----g~glGL~ 570 (607)
T PRK11360 499 ELLKQVLLNILINAVQAISA-RGKIRIRTWQ--YSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAK-----GTGLGLA 570 (607)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCeEEEEEEE--cCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCC-----CCchhHH
Confidence 34666999999999998643 3467776653 2234 899999999999999999999988876643 2588875
Q ss_pred c---cccccCCeEEEEeeeC
Q 012137 186 T---STMRLGADVIVFSRAT 202 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~ 202 (470)
. ....+|+++.+.|...
T Consensus 571 ~~~~~~~~~~G~i~~~s~~~ 590 (607)
T PRK11360 571 LSQRIINAHGGDIEVESEPG 590 (607)
T ss_pred HHHHHHHHcCCEEEEEEcCC
Confidence 3 3456899999998864
No 54
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=98.06 E-value=1.3e-05 Score=80.90 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEec----CCC----CceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCc
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIM----KDN----SPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQ 179 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~----~~~----~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~ 179 (470)
.+..++.|||+||+++.......|.|...... .++ ...|.|.|||+||+++.+.++|..+++++.. .
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~-----g 311 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREG-----G 311 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCC-----C
Confidence 45679999999999996333455666542210 001 2468999999999999999999988877643 2
Q ss_pred cccccc---ccccccCCeEEEEeee
Q 012137 180 YGNGFK---TSTMRLGADVIVFSRA 201 (470)
Q Consensus 180 fGiGlK---~As~~lg~~v~V~Sr~ 201 (470)
.|+||. .....+|.++.+.|..
T Consensus 312 ~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 312 TGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEecC
Confidence 588875 3456789999999875
No 55
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=98.06 E-value=1.9e-05 Score=63.27 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=60.8
Q ss_pred HHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccccc---
Q 012137 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS--- 187 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~A--- 187 (470)
.++.||++||+++.......|.|.+. ...+...+.|.|+|.||++..+.+.+...... ......+.+|+||+.+
T Consensus 3 ~~~~~ll~Na~~~~~~~~~~v~i~~~--~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~gl~~~~~~ 79 (103)
T cd00075 3 QVLLNLLSNAIKHTPEGGGRITISVE--RDGDHLEIRVEDNGPGIPEEDLERIFERFSDG-SRSRKGGGTGLGLSIVKKL 79 (103)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEEEE--ecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC-CCCCCCCccccCHHHHHHH
Confidence 48999999999995321355666654 33456789999999999999998887643111 1123335688998743
Q ss_pred ccccCCeEEEEeee
Q 012137 188 TMRLGADVIVFSRA 201 (470)
Q Consensus 188 s~~lg~~v~V~Sr~ 201 (470)
..++|..+.+.+..
T Consensus 80 ~~~~~g~~~~~~~~ 93 (103)
T cd00075 80 VELHGGRIEVESEP 93 (103)
T ss_pred HHHcCCEEEEEeCC
Confidence 44578899887765
No 56
>PRK10490 sensor protein KdpD; Provisional
Probab=98.05 E-value=1.2e-05 Score=92.96 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
.++..++.|||+||+++... ...|.|.... .++...|.|.|||+||+++.+.++|.++++.+... ..+..|+||..
T Consensus 777 ~~L~qVL~NLL~NAik~s~~-g~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~-~~~G~GLGL~I 852 (895)
T PRK10490 777 PLFERVLINLLENAVKYAGA-QAEIGIDAHV--EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKES-AIPGVGLGLAI 852 (895)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCeEEEEEEE--eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCC-CCCCccHHHHH
Confidence 46778999999999999533 3467776653 34567899999999999999999999888765432 22347888853
Q ss_pred ---cccccCCeEEEEeeeCC
Q 012137 187 ---STMRLGADVIVFSRATH 203 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~~ 203 (470)
..-.+|.++.+.|...+
T Consensus 853 vk~ive~hGG~I~v~s~~~~ 872 (895)
T PRK10490 853 CRAIVEVHGGTIWAENRPEG 872 (895)
T ss_pred HHHHHHHcCCEEEEEECCCC
Confidence 34568999999987643
No 57
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=98.04 E-value=1.2e-05 Score=90.16 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=67.8
Q ss_pred HHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc--
Q 012137 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT-- 186 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~-- 186 (470)
.-++|.||||||+.+... .++|.|.... ..+..++.|.|+|+||++++++++|..+|+...... ...-|+||..
T Consensus 776 ieQVLiNLleNA~Kyap~-~s~I~I~~~~--~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G~GLGLsIc~ 851 (890)
T COG2205 776 IEQVLINLLENALKYAPP-GSEIRINAGV--ERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA-TRGVGLGLAICR 851 (890)
T ss_pred HHHHHHHHHHHHHhhCCC-CCeEEEEEEE--ecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC-CCCccccHHHHH
Confidence 344999999999999543 3567777654 457889999999999999999999997766443322 2225666642
Q ss_pred -cccccCCeEEEEeeeCCC
Q 012137 187 -STMRLGADVIVFSRATHE 204 (470)
Q Consensus 187 -As~~lg~~v~V~Sr~~~~ 204 (470)
..-.+|+++.+.++..+|
T Consensus 852 ~iv~ahgG~I~a~~~~~gG 870 (890)
T COG2205 852 GIVEAHGGTISAENNPGGG 870 (890)
T ss_pred HHHHHcCCeEEEEEcCCCc
Confidence 356789999999966543
No 58
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=98.03 E-value=1.3e-05 Score=90.41 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK 185 (470)
.++..++.|||+||+++... ...|.|.+.. .++...|+|.|||+||+++.+.++|+.+++.+.. ...-+..|+||.
T Consensus 596 ~~L~~il~NLI~NAik~s~~-~~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~ 672 (703)
T TIGR03785 596 ELIAQMLDKLVDNAREFSPE-DGLIEVGLSQ--NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLY 672 (703)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCeEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHH
Confidence 45566999999999999543 3457776653 4466789999999999999999999988876643 222235899986
Q ss_pred c---cccccCCeEEEEeeeC
Q 012137 186 T---STMRLGADVIVFSRAT 202 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~ 202 (470)
. ....+|.++.+.+...
T Consensus 673 Ivr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 673 IVRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 4 3567899999988764
No 59
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.03 E-value=1.6e-05 Score=90.54 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCC-CCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCcccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKD-NSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGF 184 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~-~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGl 184 (470)
.++..++.|||+||+++...|.-.|.|.......+ ....|.|.|||.||+++++.++|.+++..... ....|..|+||
T Consensus 407 ~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL 486 (919)
T PRK11107 407 LRLQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGL 486 (919)
T ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhH
Confidence 45667999999999999643332334433221111 13679999999999999999999977654332 23345689998
Q ss_pred cc---cccccCCeEEEEeeeCCC
Q 012137 185 KT---STMRLGADVIVFSRATHE 204 (470)
Q Consensus 185 K~---As~~lg~~v~V~Sr~~~~ 204 (470)
.. ..-.+|+++.|.|....|
T Consensus 487 ~i~~~i~~~~gG~i~v~s~~~~G 509 (919)
T PRK11107 487 VITQKLVNEMGGDISFHSQPNRG 509 (919)
T ss_pred HHHHHHHHHhCCEEEEEecCCCC
Confidence 53 345689999999987543
No 60
>PRK10337 sensor protein QseC; Provisional
Probab=98.01 E-value=1.5e-05 Score=83.42 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
..+..++.|||+||+++... ...|.|.+.. ..|+|.|||.||+++++.++|..++..+.. ..+.+|+||..
T Consensus 351 ~~l~~vl~Nli~NA~k~~~~-~~~i~i~~~~------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i 421 (449)
T PRK10337 351 LLLSLLVRNLLDNAIRYSPQ-GSVVDVTLNA------RNFTVRDNGPGVTPEALARIGERFYRPPGQ--EATGSGLGLSI 421 (449)
T ss_pred HHHHHHHHHHHHHHHhhCCC-CCeEEEEEEe------eEEEEEECCCCCCHHHHHHhcccccCCCCC--CCCccchHHHH
Confidence 45566899999999999532 2356666532 269999999999999999999987754322 22458999864
Q ss_pred ---cccccCCeEEEEeeeC
Q 012137 187 ---STMRLGADVIVFSRAT 202 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~ 202 (470)
...++|.++.+.|...
T Consensus 422 v~~i~~~~gg~l~~~s~~~ 440 (449)
T PRK10337 422 VRRIAKLHGMNVSFGNAPE 440 (449)
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 3466899999988764
No 61
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=97.99 E-value=2.2e-05 Score=89.72 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
.++..++.|||+||+++.. ...|.|.+.. .++...|.|.|||+||+++.+.++|.++++.+.. .|..|+||..
T Consensus 560 ~~l~qil~NLl~NAik~~~--~g~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i 632 (914)
T PRK11466 560 RRIRQVITNLLSNALRFTD--EGSIVLRSRT--DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK---RGGTGLGLTI 632 (914)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCeEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC---CCCCcccHHH
Confidence 4566799999999999953 3467776653 3456789999999999999999999987754322 2457999853
Q ss_pred ---cccccCCeEEEEeeeCCC
Q 012137 187 ---STMRLGADVIVFSRATHE 204 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~~~ 204 (470)
..-.+|+++.|.|....|
T Consensus 633 ~~~l~~~~gG~i~v~s~~~~G 653 (914)
T PRK11466 633 SSRLAQAMGGELSATSTPEVG 653 (914)
T ss_pred HHHHHHHcCCEEEEEecCCCC
Confidence 346689999999987543
No 62
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=97.99 E-value=1.9e-05 Score=90.62 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCC-ceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNS-PALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~-~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
.++..++.|||+||+.+.. ...|.|.+... .+. ..|.|.|+|+||+++++.++|.++++.+.. ...|..|+||.
T Consensus 578 ~~l~~il~nLi~NAik~~~--~g~i~i~~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~g~GLGL~ 652 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFTD--RGSVVLRVSLN--DDSSLLFEVEDTGCGIAEEEQATLFDAFTQADGR-RRSGGTGLGLA 652 (968)
T ss_pred HHHHHHHHHHHHHHHhhCC--CCeEEEEEEEc--CCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCCC-CCCCCccHHHH
Confidence 4556699999999999953 34577766542 344 789999999999999999999987766632 33356899985
Q ss_pred c---cccccCCeEEEEeeeCCC
Q 012137 186 T---STMRLGADVIVFSRATHE 204 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~~~ 204 (470)
. ..-.+|+++.|.|....|
T Consensus 653 i~~~l~~~~gG~i~~~s~~~~G 674 (968)
T TIGR02956 653 ISQRLVEAMDGELGVESELGVG 674 (968)
T ss_pred HHHHHHHHcCCEEEEEecCCCc
Confidence 3 356789999999887543
No 63
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.95 E-value=2.8e-05 Score=90.21 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK 185 (470)
..+-.++.|||+||+++... ..|.|.+.. .++...|.|.|+|.||+++++.++|.++++.+.. ....+..|+||.
T Consensus 561 ~~L~qvl~NLl~NAik~t~~--G~I~I~v~~--~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~ 636 (924)
T PRK10841 561 MRLQQVISNLLSNAIKFTDT--GCIVLHVRV--DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLA 636 (924)
T ss_pred HHHHHHHHHHHHHHHhhCCC--CcEEEEEEE--eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHH
Confidence 45667999999999999533 356666543 3456789999999999999999999987764433 223345799986
Q ss_pred cc---ccccCCeEEEEeeeCC
Q 012137 186 TS---TMRLGADVIVFSRATH 203 (470)
Q Consensus 186 ~A---s~~lg~~v~V~Sr~~~ 203 (470)
.+ .-.+|+++.|.|....
T Consensus 637 I~k~lv~~~gG~I~v~S~~g~ 657 (924)
T PRK10841 637 ICEKLINMMDGDISVDSEPGM 657 (924)
T ss_pred HHHHHHHHCCCEEEEEEcCCC
Confidence 43 4568999999998643
No 64
>PRK09835 sensor kinase CusS; Provisional
Probab=97.94 E-value=2.6e-05 Score=81.92 Aligned_cols=92 Identities=23% Similarity=0.217 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK 185 (470)
.++..++.|||+||+.+... ...|.|.+.. .++...|.|.|||.||+++.+.++|..+++.... ...-+..|+||.
T Consensus 374 ~~l~~vl~nll~Na~~~~~~-~~~I~i~~~~--~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~ 450 (482)
T PRK09835 374 LMLRRAISNLLSNALRYTPA-GEAITVRCQE--VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLA 450 (482)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCeEEEEEEE--eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHH
Confidence 34666999999999998532 2457777653 3456789999999999999999999977765433 222245899985
Q ss_pred c---cccccCCeEEEEeee
Q 012137 186 T---STMRLGADVIVFSRA 201 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~ 201 (470)
. ....+|.++.+.|..
T Consensus 451 i~~~i~~~~~g~i~~~s~~ 469 (482)
T PRK09835 451 IVKSIVVAHKGTVAVTSDA 469 (482)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 3 356689999998864
No 65
>PRK10547 chemotaxis protein CheA; Provisional
Probab=97.91 E-value=4.4e-05 Score=85.57 Aligned_cols=92 Identities=17% Similarity=0.316 Sum_probs=67.1
Q ss_pred HHHHHHHHchhhhhhC-----------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHH------------------
Q 012137 111 GAIAELLDNAVDEVQN-----------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR------------------ 161 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~-----------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~------------------ 161 (470)
..+.+||.||+|+.-. ....|.|.... .++...|.|.|||.||+++.+.
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~--~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e 465 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH--QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEE 465 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHH
Confidence 3467999999998411 12357776653 4567889999999999997664
Q ss_pred ---HhhhcCcccccCCCCCCccccccc---ccccccCCeEEEEeeeCCC
Q 012137 162 ---KCMSLGYSTKKANKTIGQYGNGFK---TSTMRLGADVIVFSRATHE 204 (470)
Q Consensus 162 ---~~~~~G~S~K~~~~~iG~fGiGlK---~As~~lg~~v~V~Sr~~~~ 204 (470)
.+|.+|+|++.........|+||. .....+|+++.|.|+...+
T Consensus 466 ~~~lIF~pgfst~~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~G 514 (670)
T PRK10547 466 VGMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKG 514 (670)
T ss_pred HHHHhhcCCcccccccccCCCCchhHHHHHHHHHHcCCEEEEEecCCCc
Confidence 467888988765444555899984 4456799999999987433
No 66
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.90 E-value=4.3e-05 Score=90.15 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecC-CCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMK-DNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~-~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
..+..++.|||+||+++...+...+.+....... .....|.|.|||+||+++++.++|.++++.+.... -+..|+||.
T Consensus 827 ~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~-~~G~GLGL~ 905 (1197)
T PRK09959 827 QAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQ-QTGSGLGLM 905 (1197)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCCC-CCCcCchHH
Confidence 4567799999999999964433233333221111 12356899999999999999999998877654322 234799985
Q ss_pred c---cccccCCeEEEEeeeCC
Q 012137 186 T---STMRLGADVIVFSRATH 203 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~~~ 203 (470)
. ..-.+|+++.+.|....
T Consensus 906 i~~~iv~~~gG~i~v~s~~~~ 926 (1197)
T PRK09959 906 ICKELIKNMQGDLSLESHPGI 926 (1197)
T ss_pred HHHHHHHHcCCEEEEEeCCCC
Confidence 4 34568999999998743
No 67
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.86 E-value=1.1e-05 Score=88.45 Aligned_cols=87 Identities=25% Similarity=0.295 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------CCCCCcc
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQY 180 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-------~~~iG~f 180 (470)
.+.+++.||+-||+|| +|+.|.|.+.. ....+.|.|||.||..++++..-..-+++|-. ....|..
T Consensus 21 sla~~VeElv~NSiDA---~At~V~v~V~~----~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfR 93 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDA---EATCVAVRVNM----ETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFR 93 (1142)
T ss_pred HHHHHHHHHHhhcccc---CceEEEEEecC----ceeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccc
Confidence 3455999999999999 99998887732 45779999999999999999876666666654 2333433
Q ss_pred cccccccccccCCeEEEEeeeCC
Q 012137 181 GNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 181 GiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
|-. +|+.+--..+.|.|+.++
T Consensus 94 GeA--LasIsd~s~l~v~skkk~ 114 (1142)
T KOG1977|consen 94 GEA--LASISDMSSLVVISKKKN 114 (1142)
T ss_pred hhh--hhhhhhhhhhhhhhhhcC
Confidence 333 455555566778888753
No 68
>PRK13557 histidine kinase; Provisional
Probab=97.81 E-value=8.7e-05 Score=78.60 Aligned_cols=92 Identities=26% Similarity=0.330 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEe-------------cCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCC
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNI-------------MKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN 174 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~-------------~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~ 174 (470)
.+-.++.||+.||+++...+ ..+.|..... ..++...|.|.|||.||+++.+.++|.++++++...
T Consensus 277 ~l~~vl~nll~NA~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~~ 355 (540)
T PRK13557 277 QAEVALLNVLINARDAMPEG-GRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEEG 355 (540)
T ss_pred HHHHHHHHHHHHHHHhcccC-CeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCCC
Confidence 45668999999999996432 3455544321 022346799999999999999999999888776432
Q ss_pred CCCCccccccc---ccccccCCeEEEEeeeCC
Q 012137 175 KTIGQYGNGFK---TSTMRLGADVIVFSRATH 203 (470)
Q Consensus 175 ~~iG~fGiGlK---~As~~lg~~v~V~Sr~~~ 203 (470)
+..|+||. .....+|+++.+.|...+
T Consensus 356 ---~g~GlGL~i~~~~v~~~gG~i~~~s~~~~ 384 (540)
T PRK13557 356 ---KGTGLGLSMVYGFAKQSGGAVRIYSEVGE 384 (540)
T ss_pred ---CCCCccHHHHHHHHHHCCCEEEEEecCCC
Confidence 34688875 335668999999988643
No 69
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.81 E-value=3.9e-05 Score=91.01 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=61.7
Q ss_pred HHHHHHHHHchhhhhh--CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHH--------Hhhh-cCcccccC----C
Q 012137 110 FGAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA----N 174 (470)
Q Consensus 110 f~AIaELIDNAiDA~~--~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~--------~~~~-~G~S~K~~----~ 174 (470)
.-++-|+||||+|... ..++.|.|.+.. ....|+|.|||.|||-+.-. -+|. +..++|.+ .
T Consensus 79 ~kifdEIldNAvDe~~r~g~~~~I~V~I~~----~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yK 154 (1465)
T PLN03237 79 YKIFDEILVNAADNKQRDPKMDSLRVVIDV----EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKK 154 (1465)
T ss_pred hhhHHHHhhhhHhHHhhcCCCCEEEEEEEc----CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcce
Confidence 4688999999999762 235788888752 23579999999999976321 1233 33445554 3
Q ss_pred CCCCcccccccccccccCCeEEEEeee
Q 012137 175 KTIGQYGNGFKTSTMRLGADVIVFSRA 201 (470)
Q Consensus 175 ~~iG~fGiGlK~As~~lg~~v~V~Sr~ 201 (470)
.+-|++|+|.+ .+-.+...+.|.++.
T Consensus 155 vSGGlhGVGas-vvNaLS~~f~Vev~D 180 (1465)
T PLN03237 155 TTGGRNGYGAK-LTNIFSTEFVIETAD 180 (1465)
T ss_pred eeccccccCcc-ccccccCeeEEEEEE
Confidence 45699999987 456688899998873
No 70
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.77 E-value=3.3e-05 Score=86.09 Aligned_cols=108 Identities=23% Similarity=0.251 Sum_probs=73.7
Q ss_pred CcccccccCc-ccccccccchhhHHHHHHHHHHchhhhhh-CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHH----
Q 012137 87 GSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQ-NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL---- 160 (470)
Q Consensus 87 ~~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~-~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l---- 160 (470)
..++|++.-| +|+-|... .-+...+.|+||||+|... ..++.|.|.+.. ...|+|.|||.|||.+.-
T Consensus 14 ~glE~VRkRPgMYIGst~~--~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~-----dgsitV~DnGrGIPv~~h~~~~ 86 (637)
T TIGR01058 14 EGLDAVRKRPGMYIGSTDS--KGLHHLVWEIVDNSVDEVLAGYADNITVTLHK-----DNSITVQDDGRGIPTGIHQDGN 86 (637)
T ss_pred cccHHHhcCCCCeECCCCc--chhheehhhhhcchhhhhhcCCCcEEEEEEcC-----CCeEEEEECCCcccCcccCcCC
Confidence 3788999999 77754332 2233467799999998654 347888888852 247999999999997522
Q ss_pred ----HHhhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 161 ----RKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 161 ----~~~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
+-+|. +....|.+ .-+-|.+|+|.+ +.-.+...++|.++..
T Consensus 87 ~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~s-vvNAlS~~~~V~v~r~ 136 (637)
T TIGR01058 87 ISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGAS-VVNALSSWLEVTVKRD 136 (637)
T ss_pred CccceeEEEEecccCcCCCCcccccCCccccccc-ccceeeceEEEEEEEC
Confidence 12233 22333433 345699999986 5666889999998864
No 71
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=97.66 E-value=0.0001 Score=74.93 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=61.5
Q ss_pred HHHHHHHHHHchhhhhhCCC---ceEEE--------EEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCC
Q 012137 109 AFGAIAELLDNAVDEVQNGA---TFVKV--------DRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTI 177 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gA---~~V~I--------~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~i 177 (470)
+.+|+.|||.||..|..+.+ ..|.+ .+......-...|+|.|||+|++++-...+|.+..|+|.+-
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~G--- 318 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREGG--- 318 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCCC---
Confidence 34599999999999974211 22222 11100001134578999999999999999999999888762
Q ss_pred Cccccccccc---ccccCCeEEEEeee
Q 012137 178 GQYGNGFKTS---TMRLGADVIVFSRA 201 (470)
Q Consensus 178 G~fGiGlK~A---s~~lg~~v~V~Sr~ 201 (470)
-|+||..+ .-.+|+.++..|.+
T Consensus 319 --sGLGLala~~li~qH~G~Ie~~S~P 343 (363)
T COG3852 319 --TGLGLALAQNLIDQHGGKIEFDSWP 343 (363)
T ss_pred --ccccHHHHHHHHHhcCCEEEEeccC
Confidence 48888654 35578889999988
No 72
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.57 E-value=0.00019 Score=80.94 Aligned_cols=91 Identities=29% Similarity=0.442 Sum_probs=69.5
Q ss_pred HHHHHHchhhhhh--------CC---CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHH-H------------------
Q 012137 113 IAELLDNAVDEVQ--------NG---ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR-K------------------ 162 (470)
Q Consensus 113 IaELIDNAiDA~~--------~g---A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~-~------------------ 162 (470)
+--||-||+|+.- +| ...|.+... ..++...|+|.|||.||+++.+. +
T Consensus 437 L~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~--~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~ 514 (716)
T COG0643 437 LTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAY--HEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDE 514 (716)
T ss_pred HHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEE--cCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHH
Confidence 5679999999841 12 235666654 46788999999999999876543 2
Q ss_pred -----hhhcCcccccCCCCCCcccccc---cccccccCCeEEEEeeeCCCC
Q 012137 163 -----CMSLGYSTKKANKTIGQYGNGF---KTSTMRLGADVIVFSRATHES 205 (470)
Q Consensus 163 -----~~~~G~S~K~~~~~iG~fGiGl---K~As~~lg~~v~V~Sr~~~~~ 205 (470)
+|.+|||++..-+.+...|+|| |+..-++|+.+.|.|+...|.
T Consensus 515 Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT 565 (716)
T COG0643 515 EILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGT 565 (716)
T ss_pred HHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCe
Confidence 4566788877777787799998 788899999999999986544
No 73
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.47 E-value=0.00029 Score=72.82 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=70.8
Q ss_pred HHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcc-cccCCCCCCccccccccc
Q 012137 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYS-TKKANKTIGQYGNGFKTS 187 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S-~K~~~~~iG~fGiGlK~A 187 (470)
..+++-|+|.||+.+... ...|+|.+.. ......++|.|.|.|||.+++.++|..+|. +|......|.-|+||..|
T Consensus 343 ~tQVldNii~NA~KYsP~-Gg~Itv~~~~--~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIa 419 (459)
T COG5002 343 MTQVLDNIISNALKYSPD-GGRITVSVKQ--RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIA 419 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-CCeEEEEEee--eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHH
Confidence 456899999999999543 3567777754 446788999999999999999999986554 454455678889998643
Q ss_pred ---ccccCCeEEEEeeeC
Q 012137 188 ---TMRLGADVIVFSRAT 202 (470)
Q Consensus 188 ---s~~lg~~v~V~Sr~~ 202 (470)
.-.+|+++...|...
T Consensus 420 keiV~~hgG~iWA~s~~g 437 (459)
T COG5002 420 KEIVQAHGGRIWAESEEG 437 (459)
T ss_pred HHHHHHhCCeEEEecccC
Confidence 577899998888853
No 74
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.34 E-value=0.00041 Score=71.73 Aligned_cols=76 Identities=30% Similarity=0.438 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccc-ccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGN-GFK 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGi-GlK 185 (470)
.-+|.++.|.|-|++.+. +|+.+.|.+.. .++...|.|.|||.|.+++... |.||+ |++
T Consensus 278 ~~l~rivQEaltN~~rHa--~A~~v~V~l~~--~~~~l~l~V~DnG~Gf~~~~~~----------------~~~GL~~mr 337 (365)
T COG4585 278 DALFRIVQEALTNAIRHA--QATEVRVTLER--TDDELRLEVIDNGVGFDPDKEG----------------GGFGLLGMR 337 (365)
T ss_pred HHHHHHHHHHHHHHHhcc--CCceEEEEEEE--cCCEEEEEEEECCcCCCccccC----------------CCcchhhHH
Confidence 567889999999999995 78999999875 3456999999999999977521 33555 455
Q ss_pred ccccccCCeEEEEeeeC
Q 012137 186 TSTMRLGADVIVFSRAT 202 (470)
Q Consensus 186 ~As~~lg~~v~V~Sr~~ 202 (470)
-=...+|++++|.|.+.
T Consensus 338 eRv~~lgG~l~i~S~~g 354 (365)
T COG4585 338 ERVEALGGTLTIDSAPG 354 (365)
T ss_pred HHHHHcCCEEEEEecCC
Confidence 55677999999999983
No 75
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=97.33 E-value=0.0009 Score=59.26 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=57.6
Q ss_pred HHHHHHHHchhhhhh--CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccccc
Q 012137 111 GAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (470)
Q Consensus 111 ~AIaELIDNAiDA~~--~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~As 188 (470)
.++.||+.||+.+.. .....|.|.+.. .++...|.|.|+|.||+. +.+++.++++.+.. .+..|+||..+
T Consensus 42 ~~l~eli~Nai~h~~~~~~~~~I~v~~~~--~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~~---~~~~GlGL~lv- 113 (137)
T TIGR01925 42 TAVSEAVTNAIIHGYEENCEGVVYISATI--EDHEVYITVRDEGIGIEN--LEEAREPLYTSKPE---LERSGMGFTVM- 113 (137)
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEEEEEE--eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCCC---CCCCcccHHHH-
Confidence 489999999998631 123567777654 345678999999999983 55677776665432 23468888643
Q ss_pred cccCCeEEEEeeeC
Q 012137 189 MRLGADVIVFSRAT 202 (470)
Q Consensus 189 ~~lg~~v~V~Sr~~ 202 (470)
-+++.++.+.+...
T Consensus 114 ~~~~~~l~~~~~~~ 127 (137)
T TIGR01925 114 ENFMDDVSVDSEKE 127 (137)
T ss_pred HHhCCcEEEEECCC
Confidence 34667888877653
No 76
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=97.32 E-value=0.00065 Score=70.66 Aligned_cols=89 Identities=25% Similarity=0.341 Sum_probs=67.3
Q ss_pred HHHHHHHHchhhhhhC-------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------CCC
Q 012137 111 GAIAELLDNAVDEVQN-------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKT 176 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~-------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-------~~~ 176 (470)
-++-||+.||+.|... +-..|.|.+.. .++...|.|.|-|+|++++.+.++|.++||+-.. ...
T Consensus 263 ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~--gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~p 340 (414)
T KOG0787|consen 263 YMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK--GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAP 340 (414)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec--CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCc
Confidence 3899999999999741 12347777753 4467889999999999999999999999987554 223
Q ss_pred CCccccccccc---ccccCCeEEEEeee
Q 012137 177 IGQYGNGFKTS---TMRLGADVIVFSRA 201 (470)
Q Consensus 177 iG~fGiGlK~A---s~~lg~~v~V~Sr~ 201 (470)
+-.||.||-++ .--.|.++.+.|-.
T Consensus 341 laGfG~GLPisrlYa~yf~Gdl~L~Sle 368 (414)
T KOG0787|consen 341 LAGFGFGLPISRLYARYFGGDLKLQSLE 368 (414)
T ss_pred ccccccCCcHHHHHHHHhCCCeeEEeee
Confidence 45588888543 34468888888876
No 77
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=97.22 E-value=0.00012 Score=83.39 Aligned_cols=107 Identities=22% Similarity=0.250 Sum_probs=72.5
Q ss_pred cccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhCC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHH----
Q 012137 88 SLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR---- 161 (470)
Q Consensus 88 ~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~---- 161 (470)
.+++++.-| +|+-+... .-+...+-|+||||+|.+.+| ++.|.|.+.. ...++|.|||.|||-+.-.
T Consensus 110 GLEaVRkRPGMYIGst~~--~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~-----DgsItV~DnGRGIPvd~h~k~g~ 182 (903)
T PTZ00109 110 GLEAVRKRPGMYIGNTDE--KGLHQLLFEILDNSVDEYLAGECNKITVVLHK-----DGSVEISDNGRGIPCDVSEKTGK 182 (903)
T ss_pred ccHHHhcCCCceeCCCCC--CcceEEEEEEeeccchhhccCCCcEEEEEEcC-----CCeEEEEeCCccccccccccCCC
Confidence 888999998 67643221 223336789999999987544 6888888742 3479999999999975422
Q ss_pred ----Hhhh-cCcccccC--------------------------------------------CCCCCcccccccccccccC
Q 012137 162 ----KCMS-LGYSTKKA--------------------------------------------NKTIGQYGNGFKTSTMRLG 192 (470)
Q Consensus 162 ----~~~~-~G~S~K~~--------------------------------------------~~~iG~fGiGlK~As~~lg 192 (470)
-+|. +....|.+ ..+-|.+|+|.+ ++-+|.
T Consensus 183 s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~S-VVNALS 261 (903)
T PTZ00109 183 SGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLS-VVNALS 261 (903)
T ss_pred cceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCccee-eeeecc
Confidence 1222 11100110 235689999985 677799
Q ss_pred CeEEEEeeeC
Q 012137 193 ADVIVFSRAT 202 (470)
Q Consensus 193 ~~v~V~Sr~~ 202 (470)
..+.|.++..
T Consensus 262 ~~l~VeV~Rd 271 (903)
T PTZ00109 262 SFLKVDVFKG 271 (903)
T ss_pred CeEEEEEEEC
Confidence 9999999885
No 78
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=97.20 E-value=0.00059 Score=74.72 Aligned_cols=87 Identities=17% Similarity=0.254 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHchhhhhhC------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccc
Q 012137 108 WAFGAIAELLDNAVDEVQN------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYG 181 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fG 181 (470)
-+-+|+.|||.||.+|... ....+.++. ...++..++.|+|||.|.+.+.+++++++-.+++..- -|
T Consensus 600 ~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~--~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~KG-----TG 672 (712)
T COG5000 600 LLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL--DDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREKG-----TG 672 (712)
T ss_pred HHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE--ecCCCeEEEEEecCCCCCChHHhhhhccCceeccccc-----cc
Confidence 4456999999999999842 112344444 3466789999999999999999999999888777651 26
Q ss_pred cccc---ccccccCCeEEEEeee
Q 012137 182 NGFK---TSTMRLGADVIVFSRA 201 (470)
Q Consensus 182 iGlK---~As~~lg~~v~V~Sr~ 201 (470)
+||. -..--+|+++.+.-++
T Consensus 673 LGLAiVKkIvEeHGG~leL~da~ 695 (712)
T COG5000 673 LGLAIVKKIVEEHGGRLELHNAP 695 (712)
T ss_pred ccHHHHHHHHHhcCCeEEecCCC
Confidence 6663 3355678888887665
No 79
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=97.15 E-value=0.00068 Score=80.89 Aligned_cols=89 Identities=22% Similarity=0.246 Sum_probs=63.8
Q ss_pred HHHHHHHHHHchhhhhh-----CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHH--------Hhhh-cCcccccC-
Q 012137 109 AFGAIAELLDNAVDEVQ-----NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA- 173 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~-----~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~--------~~~~-~G~S~K~~- 173 (470)
+.-++-|+||||+|... ..++.|.|.+.. ....|+|.|||.|||.+.-. -+|. +..++|.+
T Consensus 58 L~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~----d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd 133 (1388)
T PTZ00108 58 LYKIFDEILVNAADNKARDKGGHRMTYIKVTIDE----ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDD 133 (1388)
T ss_pred hhhhHHHHhhhhhhhhcccCCCCCccEEEEEEec----cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCC
Confidence 34578999999999865 235788888752 23579999999999975321 1233 33445554
Q ss_pred ---CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 174 ---NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 174 ---~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
..+-|++|+|.+ ++-.+...+.|.++..
T Consensus 134 ~~yKvSGGlhGVGas-vvNalS~~f~Vev~r~ 164 (1388)
T PTZ00108 134 TEKRVTGGRNGFGAK-LTNIFSTKFTVECVDS 164 (1388)
T ss_pred CceeeecccccCCcc-ccccccceEEEEEEEC
Confidence 345699999987 5666899999999875
No 80
>PRK03660 anti-sigma F factor; Provisional
Probab=97.07 E-value=0.0027 Score=56.75 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=56.3
Q ss_pred HHHHHHHHchhhhhhCC-C-ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccccc
Q 012137 111 GAIAELLDNAVDEVQNG-A-TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~g-A-~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~As 188 (470)
.++.|++.||+.+.... . ..|.|.+.. .++...++|.|+|.||++ +...+..+++.+... +.-|+||..+.
T Consensus 42 ~~l~eli~Nai~h~~~~~~~~~i~i~~~~--~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~~---~~~GlGL~i~~ 114 (146)
T PRK03660 42 TAVSEAVTNAIIHGYENNPDGVVYIEVEI--EEEELEITVRDEGKGIED--IEEAMQPLYTTKPEL---ERSGMGFTVME 114 (146)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEEEE--CCCEEEEEEEEccCCCCh--HHHhhCCCcccCCCC---CCccccHHHHH
Confidence 48999999999764211 1 456776643 345678999999999986 446676666544321 23588887543
Q ss_pred cccCCeEEEEeeeC
Q 012137 189 MRLGADVIVFSRAT 202 (470)
Q Consensus 189 ~~lg~~v~V~Sr~~ 202 (470)
+++..+.+.+...
T Consensus 115 -~~~~~i~~~~~~~ 127 (146)
T PRK03660 115 -SFMDEVEVESEPG 127 (146)
T ss_pred -HhCCeEEEEecCC
Confidence 5778888876653
No 81
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=97.07 E-value=0.00068 Score=62.67 Aligned_cols=84 Identities=21% Similarity=0.230 Sum_probs=56.1
Q ss_pred HHHHHHHchhhhhhCC--CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccccccc
Q 012137 112 AIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTM 189 (470)
Q Consensus 112 AIaELIDNAiDA~~~g--A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~As~ 189 (470)
|+.|++-||+.+...+ ...|.|.+.. .++...+.|.|+|.||+++.+..++.+.+..+.... ...-|+||..+.
T Consensus 46 av~Ea~~Nai~Hg~~~~~~~~I~I~~~~--~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~-~~~~G~GL~li~- 121 (161)
T PRK04069 46 AVSEACTNAVQHAYKEDEVGEIHIRFEI--YEDRLEIVVADNGVSFDYETLKSKLGPYDISKPIED-LREGGLGLFLIE- 121 (161)
T ss_pred HHHHHHHHHHHhccCCCCCCeEEEEEEE--ECCEEEEEEEECCcCCChHHhccccCCCCCCCcccc-cCCCceeHHHHH-
Confidence 8999999999985322 2456776654 356899999999999999988777765543332211 111377776443
Q ss_pred ccCCeEEEEe
Q 012137 190 RLGADVIVFS 199 (470)
Q Consensus 190 ~lg~~v~V~S 199 (470)
++.+++.+.+
T Consensus 122 ~l~d~v~~~~ 131 (161)
T PRK04069 122 TLMDDVTVYK 131 (161)
T ss_pred HHHHhEEEEc
Confidence 3666777664
No 82
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=97.06 E-value=0.0004 Score=77.14 Aligned_cols=83 Identities=22% Similarity=0.196 Sum_probs=58.0
Q ss_pred HHHHHHHchhhhhhC---C-CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHH-----------hhh-cCcccccC--
Q 012137 112 AIAELLDNAVDEVQN---G-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK-----------CMS-LGYSTKKA-- 173 (470)
Q Consensus 112 AIaELIDNAiDA~~~---g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~-----------~~~-~G~S~K~~-- 173 (470)
.+.|+||||+|...+ + ++.|.|.+. ...|+|.|||.|||.+.-.. +|. +....|.+
T Consensus 49 i~~EIldNavDe~~~~~~g~~~~I~V~i~------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ 122 (602)
T PHA02569 49 IIDEIIDNSVDEAIRTNFKFANKIDVTIK------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDT 122 (602)
T ss_pred eeehhhhhhhhhhhccCCCCCcEEEEEEc------CCEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCc
Confidence 678999999998643 3 678888873 34799999999999764311 122 22333443
Q ss_pred -CCCCCcccccccccccccCCeEEEEeee
Q 012137 174 -NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (470)
Q Consensus 174 -~~~iG~fGiGlK~As~~lg~~v~V~Sr~ 201 (470)
.-+-|.+|+|.+ +.-.+...+.|.++.
T Consensus 123 ykvSGGlhGVG~s-vvNaLS~~~~V~v~~ 150 (602)
T PHA02569 123 NRVTGGMNGVGSS-LTNFFSVLFIGETCD 150 (602)
T ss_pred ceeeCCcCCccce-eeeccchhhheEEEc
Confidence 335699999986 566688888887754
No 83
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=97.06 E-value=0.0012 Score=72.09 Aligned_cols=77 Identities=22% Similarity=0.219 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc-
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK- 185 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK- 185 (470)
.+++.++.|+|.||+.+. .++.|.|.+.. .++...|.|.|||.||+++.. + ..|+||.
T Consensus 468 ~~l~~il~ell~NA~kha--~a~~i~V~~~~--~~~~~~l~V~D~G~Gi~~~~~----------~-------~~glGL~i 526 (569)
T PRK10600 468 IHLLQIAREALSNALKHA--QASEVVVTVAQ--NQNQVKLSVQDNGCGVPENAE----------R-------SNHYGLII 526 (569)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEEEE--cCCEEEEEEEECCCCCCcccc----------C-------CCCccHHH
Confidence 467889999999999985 45678887753 346678999999999998631 0 1266664
Q ss_pred --ccccccCCeEEEEeeeCCC
Q 012137 186 --TSTMRLGADVIVFSRATHE 204 (470)
Q Consensus 186 --~As~~lg~~v~V~Sr~~~~ 204 (470)
...-++|+++.+.|.+.+|
T Consensus 527 ~~~~~~~lgG~l~i~s~~~~G 547 (569)
T PRK10600 527 MRDRAQSLRGDCRVRRRESGG 547 (569)
T ss_pred HHHHHHHcCCEEEEEECCCCC
Confidence 3345699999999987543
No 84
>PLN03128 DNA topoisomerase 2; Provisional
Probab=97.03 E-value=0.0013 Score=77.61 Aligned_cols=89 Identities=22% Similarity=0.214 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHchhhhhh--CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHH--------Hhhh-cCcccccC---
Q 012137 108 WAFGAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA--- 173 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~--~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~--------~~~~-~G~S~K~~--- 173 (470)
-+.-.+-|+||||+|... ..++.|.|.+.. ....|+|.|||.|||-+.-. -+|. +..++|.+
T Consensus 52 GL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~----~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ 127 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRDPSMDSLKVDIDV----EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNE 127 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc----CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCcc
Confidence 345588999999999863 235788888752 23589999999999975321 1233 33445554
Q ss_pred -CCCCCcccccccccccccCCeEEEEeee
Q 012137 174 -NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (470)
Q Consensus 174 -~~~iG~fGiGlK~As~~lg~~v~V~Sr~ 201 (470)
..+-|++|+|.+ .+-.+...+.|.++.
T Consensus 128 ykvSGGlhGvGas-vvNaLS~~f~Vev~d 155 (1135)
T PLN03128 128 KKTTGGRNGYGAK-LANIFSTEFTVETAD 155 (1135)
T ss_pred ceeeccccCCCCe-EEEeecCeEEEEEEE
Confidence 345699999987 566688999999884
No 85
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=96.99 E-value=0.0012 Score=71.58 Aligned_cols=70 Identities=31% Similarity=0.450 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc-
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT- 186 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~- 186 (470)
....++.|+++||+++. ++..|.|++.. .++...+.|.|||.||++++ +..|+|++.
T Consensus 410 ~L~ril~nlL~NAiKha--~~~~I~I~l~~--~~~~i~l~V~DnG~Gi~~~~------------------~~~GLGL~iv 467 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHA--DASAVTLQGWQ--QDERLMLVIEDDGSGLPPGS------------------GQQGFGLRGM 467 (495)
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEEEEE--cCCEEEEEEEECCCCCCcCC------------------CCCCCcHHHH
Confidence 35568999999999985 45678887754 34568899999999998652 114888753
Q ss_pred --cccccCCeEEEEe
Q 012137 187 --STMRLGADVIVFS 199 (470)
Q Consensus 187 --As~~lg~~v~V~S 199 (470)
..-.+|+++.+.|
T Consensus 468 r~iv~~~GG~i~v~S 482 (495)
T PRK11644 468 RERVTALGGTLTISC 482 (495)
T ss_pred HHHHHHcCCEEEEEc
Confidence 3467999999988
No 86
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=96.96 E-value=0.0017 Score=70.34 Aligned_cols=79 Identities=25% Similarity=0.391 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccc-cc
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF-KT 186 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGl-K~ 186 (470)
-...++.|-+-||+.+. .|+.|+|.+... ++...+.|+|||+|+++.. ...|+||+-. .-
T Consensus 481 HlLqIvREAlsNa~KHa--~As~i~V~~~~~--~g~~~~~VeDnG~Gi~~~~---------------e~~gHyGL~IM~E 541 (574)
T COG3850 481 HLLQIVREALSNAIKHA--QASEIKVTVSQN--DGQVTLTVEDNGVGIDEAA---------------EPSGHYGLNIMRE 541 (574)
T ss_pred HHHHHHHHHHHHHHHhc--ccCeEEEEEEec--CCeEEEEEeeCCcCCCCcc---------------CCCCCcchHHHHH
Confidence 35678999999999985 789999988763 3789999999999999762 4457899863 22
Q ss_pred cccccCCeEEEEeeeCCCC
Q 012137 187 STMRLGADVIVFSRATHES 205 (470)
Q Consensus 187 As~~lg~~v~V~Sr~~~~~ 205 (470)
-.-++++++.|..+..+|.
T Consensus 542 RA~~L~~~L~i~~~~~gGT 560 (574)
T COG3850 542 RAQRLGGQLRIRRREGGGT 560 (574)
T ss_pred HHHHhcCeEEEeecCCCCe
Confidence 3467999999999987654
No 87
>PRK13560 hypothetical protein; Provisional
Probab=96.91 E-value=0.0015 Score=72.74 Aligned_cols=74 Identities=26% Similarity=0.254 Sum_probs=51.6
Q ss_pred HHHHHHHHchhhhhhCC--CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc--
Q 012137 111 GAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT-- 186 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~g--A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~-- 186 (470)
.+|.||+.||+++...+ ...|.|.+.. ..++...|+|.|||+||+++.. + .+ | -|+||..
T Consensus 714 ~il~NLl~NAik~~~~~~~~~~i~i~~~~-~~~~~v~i~V~D~G~GI~~~~~-----~---~~------~-~gLGLai~~ 777 (807)
T PRK13560 714 LIISELLSNALKHAFPDGAAGNIKVEIRE-QGDGMVNLCVADDGIGLPAGFD-----F---RA------A-ETLGLQLVC 777 (807)
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEEE-cCCCEEEEEEEeCCCcCCcccc-----c---cc------c-CCccHHHHH
Confidence 47889999999985322 3467776653 2245678999999999998631 0 01 1 2688853
Q ss_pred -cccccCCeEEEEee
Q 012137 187 -STMRLGADVIVFSR 200 (470)
Q Consensus 187 -As~~lg~~v~V~Sr 200 (470)
..-.+|+++.|.|.
T Consensus 778 ~iv~~~gG~I~v~S~ 792 (807)
T PRK13560 778 ALVKQLDGEIALDSR 792 (807)
T ss_pred HHHHHcCCEEEEEcC
Confidence 35679999999985
No 88
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=96.84 E-value=0.0019 Score=59.72 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHHHchhhhhhCC--CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccccccc
Q 012137 112 AIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTM 189 (470)
Q Consensus 112 AIaELIDNAiDA~~~g--A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~As~ 189 (470)
|+.|++-||+.+.-.+ ...|.|.+.. .++...+.|.|+|.|++++.+...+.+....... .....-|+||.++ -
T Consensus 46 av~Ea~~Nai~ha~~~~~~~~I~I~~~~--~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~-~~~~~~G~GL~Li-~ 121 (159)
T TIGR01924 46 AVSEACTNAVKHAYKEGENGEIGISFHI--YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI-DDLREGGLGLFLI-E 121 (159)
T ss_pred HHHHHHHHHHHhccCCCCCCeEEEEEEE--eCCEEEEEEEEcccccCchhhccccCCCCCCCCc-ccCCCCccCHHHH-H
Confidence 8999999999985321 2467777654 3467889999999999998877666543222211 1112248888654 3
Q ss_pred ccCCeEEEEe
Q 012137 190 RLGADVIVFS 199 (470)
Q Consensus 190 ~lg~~v~V~S 199 (470)
++.+++.+.+
T Consensus 122 ~L~D~v~~~~ 131 (159)
T TIGR01924 122 TLMDEVEVYE 131 (159)
T ss_pred HhccEEEEEe
Confidence 5778888865
No 89
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=96.79 E-value=0.0026 Score=67.93 Aligned_cols=69 Identities=23% Similarity=0.363 Sum_probs=56.8
Q ss_pred HHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
.++-||+-||+||....+..|.|.... ...+..+|.|.|||.|-+.+-+.+.+.++.++|.- | -|+||.
T Consensus 567 QVlvNl~~NaldA~~h~~p~i~~~~~~-~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v----g-LGlGLS 635 (673)
T COG4192 567 QVLVNLIVNALDASTHFAPWIKLIALG-TEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV----G-LGLGLS 635 (673)
T ss_pred HHHHHHHHHHHhhhccCCceEEEEeec-CcccceEEEEecCCCCCchhHHHHhcCCccccccc----c-cccchh
Confidence 488999999999987667888887653 34567899999999999999999999999998864 2 466664
No 90
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=96.58 E-value=0.0052 Score=53.42 Aligned_cols=78 Identities=26% Similarity=0.248 Sum_probs=52.6
Q ss_pred HHHHHHHHchhhhhhCCC--ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccccc
Q 012137 111 GAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~gA--~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~As 188 (470)
-|+.|++-||+.+...+. ..|.|.+.. ..+...|.|.|+|.|+++........... .....-|.|+.. .
T Consensus 34 lav~E~~~Nav~H~~~~~~~~~v~v~~~~--~~~~l~i~v~D~G~~~d~~~~~~~~~~~~------~~~~~~G~Gl~l-i 104 (125)
T PF13581_consen 34 LAVSEALTNAVEHGYPGDPDGPVDVRLEV--DPDRLRISVRDNGPGFDPEQLPQPDPWEP------DSLREGGRGLFL-I 104 (125)
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEEEE--cCCEEEEEEEECCCCCChhhccCcccccC------CCCCCCCcCHHH-H
Confidence 399999999999964322 456666543 45678999999999999987654432221 111224777653 4
Q ss_pred cccCCeEEE
Q 012137 189 MRLGADVIV 197 (470)
Q Consensus 189 ~~lg~~v~V 197 (470)
-++.+++.+
T Consensus 105 ~~l~D~~~~ 113 (125)
T PF13581_consen 105 RSLMDEVDY 113 (125)
T ss_pred HHHHcEEEE
Confidence 458888888
No 91
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=96.55 E-value=0.0061 Score=67.27 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcC---cccccCCCCCCccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLG---YSTKKANKTIGQYGNG 183 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G---~S~K~~~~~iG~fGiG 183 (470)
.-.-....|||.||+.+.....+.|.|... ..+...++.|.|||.|++++.++++|.++ +|...- .| -|+|
T Consensus 635 ~~l~qv~~NLi~Naik~~~~e~~~i~I~~~--r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y---~g-tG~G 708 (750)
T COG4251 635 TQLGQVFQNLIANAIKFGGPENPDIEISAE--RQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEY---LG-TGLG 708 (750)
T ss_pred HHHHHHHHHHHhhheecCCCCCCceEEeee--ccCCceEEEecCCCCCcCHHHHHHHHHHHHhcCchhhh---cC-CCcc
Confidence 344557899999999986544577888754 35577899999999999999999988643 222211 12 5888
Q ss_pred ccc---cccccCCeEEEEeeeCC
Q 012137 184 FKT---STMRLGADVIVFSRATH 203 (470)
Q Consensus 184 lK~---As~~lg~~v~V~Sr~~~ 203 (470)
|.. ..-+.+.++.|.|+...
T Consensus 709 L~I~kkI~e~H~G~i~vEs~~gE 731 (750)
T COG4251 709 LAICKKIAERHQGRIWVESTPGE 731 (750)
T ss_pred HHHHHHHHHHhCceEEEeecCCC
Confidence 743 35678899999999743
No 92
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=96.41 E-value=0.008 Score=64.50 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=70.7
Q ss_pred CCchhhhhhhccccCcccccccCCCcCcccccccCccc--ccccccchhhHHHHHHHHHHchhhhhh-CCC--ceEEEEE
Q 012137 61 EAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKF--LHSNATSHKWAFGAIAELLDNAVDEVQ-NGA--TFVKVDR 135 (470)
Q Consensus 61 ~~~~~~~~~kA~~~~~~~~~~~~~~~~~~~~l~~~p~f--L~s~~tsH~w~f~AIaELIDNAiDA~~-~gA--~~V~I~i 135 (470)
+..+++||=.|-+.+.... ... ++.+++.. +.-... .|.-|||||+.|.. ... ..|.|..
T Consensus 316 E~~~~~kyl~iq~~r~~~~-le~-------~~~i~~~~~~l~~p~l-------~lqpLvENAi~hgi~~~~~~~~I~i~~ 380 (456)
T COG2972 316 ELLLIEKYLEIQKLRIGDR-LEV-------PLPIDEELEPLIDPKL-------VLQPLVENAIEHGIEPKRPGGSIAISA 380 (456)
T ss_pred HHHHHHHHHHHHHhccCcc-eEE-------EeccCcccccccCchH-------HHhHHHHHHHHHhcccCCCCCEEEEEE
Confidence 4678899999888776332 001 11111111 122222 78999999999963 222 2455555
Q ss_pred EEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccccc----cccCC-eEEEEeeeCC
Q 012137 136 VNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST----MRLGA-DVIVFSRATH 203 (470)
Q Consensus 136 ~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~As----~~lg~-~v~V~Sr~~~ 203 (470)
. ..++...++|.|||.||+++......+-+..+ .|+|+...- ..-|. .+.+.|+..+
T Consensus 381 ~--~~~~~i~i~i~Dng~g~~~~~~~~~~~~~~~r---------~giGL~Nv~~rl~~~~g~~~~~i~s~~~~ 442 (456)
T COG2972 381 K--KQDDVIQISISDNGPGIDEEKLEGLSTKGENR---------SGIGLSNVKERLKLYFGEPGLSIDSQPGK 442 (456)
T ss_pred E--EcCCEEEEEEeeCCCCCChhHHHHHHhhccCc---------ccccHHHHHHHHHHeeCCcceeEeecCCC
Confidence 4 34577889999999999998876655433221 589986433 22344 4667777654
No 93
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=96.21 E-value=0.015 Score=62.80 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=53.2
Q ss_pred HHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc---
Q 012137 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK--- 185 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK--- 185 (470)
...++.||+.||+.+. .+..+.|..... .++...|.|.|||+||+++.. ..-|+||.
T Consensus 472 l~qv~~nll~NA~k~~--~~~~i~i~~~~~-~~~~~~i~V~D~G~Gi~~~~~-----------------~~~glGL~i~~ 531 (565)
T PRK10935 472 LLQIIREATLNAIKHA--NASEIAVSCVTN-PDGEHTVSIRDDGIGIGELKE-----------------PEGHYGLNIMQ 531 (565)
T ss_pred HHHHHHHHHHHHHhcC--CCCeEEEEEEEc-CCCEEEEEEEECCcCcCCCCC-----------------CCCCcCHHHHH
Confidence 5568999999999984 345677776542 235678999999999996321 01256663
Q ss_pred ccccccCCeEEEEeeeCCC
Q 012137 186 TSTMRLGADVIVFSRATHE 204 (470)
Q Consensus 186 ~As~~lg~~v~V~Sr~~~~ 204 (470)
.-.-.+|+.+.+.|...++
T Consensus 532 ~iv~~~~G~i~v~s~~~~G 550 (565)
T PRK10935 532 ERAERLGGTLTISQPPGGG 550 (565)
T ss_pred HHHHHcCCEEEEEECCCCc
Confidence 3345789999999887543
No 94
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=95.83 E-value=0.016 Score=60.54 Aligned_cols=94 Identities=23% Similarity=0.281 Sum_probs=67.9
Q ss_pred cCcccccccCcccccccccchhhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhh
Q 012137 86 QGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS 165 (470)
Q Consensus 86 ~~~~~~l~~~p~fL~s~~tsH~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~ 165 (470)
.+.-+++..++.-.+-++|..--++...-|++.|-+.++ .|+.|+|.+.. .++...++|+|||.|+++..
T Consensus 388 rgihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA--~AS~V~i~l~~--~~e~l~Lei~DdG~Gl~~~~------ 457 (497)
T COG3851 388 RGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHA--DASAVTIQLWQ--QDERLMLEIEDDGSGLPPGS------ 457 (497)
T ss_pred cCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhcc--ccceEEEEEee--CCcEEEEEEecCCcCCCCCC------
Confidence 445566666666566566666668889999999999985 68889998753 44568999999999999642
Q ss_pred cCcccccCCCCCCccccccc---ccccccCCeEEEEeee
Q 012137 166 LGYSTKKANKTIGQYGNGFK---TSTMRLGADVIVFSRA 201 (470)
Q Consensus 166 ~G~S~K~~~~~iG~fGiGlK---~As~~lg~~v~V~Sr~ 201 (470)
|.-|.|++ --...+|+++++.|.+
T Consensus 458 ------------~v~G~Gl~GmrERVsaLGG~ltlssq~ 484 (497)
T COG3851 458 ------------GVQGFGLTGMRERVSALGGTLTLSSQH 484 (497)
T ss_pred ------------CccCcCcchHHHHHHHhCCceEEEecc
Confidence 22355544 3345689999998754
No 95
>PRK13559 hypothetical protein; Provisional
Probab=94.96 E-value=0.059 Score=54.78 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=51.4
Q ss_pred HHHHHHHHHHchhhhhh--CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 109 AFGAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~--~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
+..++.||+.||+++.. .....|.|.+.....++...+.+.|||+|++++. . ..|+|+..
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~-------------~-----~~g~Gl~i 329 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKL-------------A-----KRGFGTVI 329 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCC-------------C-----CCCcHHHH
Confidence 45699999999999831 1235777776323345678899999999987642 0 13677643
Q ss_pred ---cccc-cCCeEEEEeee
Q 012137 187 ---STMR-LGADVIVFSRA 201 (470)
Q Consensus 187 ---As~~-lg~~v~V~Sr~ 201 (470)
..-+ +|+++.+.+..
T Consensus 330 ~~~~v~~~~gG~i~~~~~~ 348 (361)
T PRK13559 330 IGAMVESQLNGQLEKTWSD 348 (361)
T ss_pred HHHHHHHHcCCeEEEEEcC
Confidence 2334 99999998764
No 96
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=94.31 E-value=0.18 Score=46.43 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=54.0
Q ss_pred HHHHHHHHchhhhhhCCC---ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccccc
Q 012137 111 GAIAELLDNAVDEVQNGA---TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~gA---~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~A 187 (470)
-|+.|++.|++.+.-... ..|.|.+.. ..+...+.|.|.|.|+. .+...+..++..... ...| |+||. .
T Consensus 43 ~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~--~~~~~~i~i~D~G~~~~--~~~~~~~~~~~~~~~-~~~~--G~Gl~-l 114 (146)
T COG2172 43 IAVSEALTNAVKHAYKLDPSEGEIRIEVSL--DDGKLEIRIWDQGPGIE--DLEESLGPGDTTAEG-LQEG--GLGLF-L 114 (146)
T ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEEEE--cCCeEEEEEEeCCCCCC--CHHHhcCCCCCCCcc-cccc--cccHH-H
Confidence 499999999999963211 456666654 44679999999995554 556677777554443 2234 55543 2
Q ss_pred ccccCCeEEEEeee
Q 012137 188 TMRLGADVIVFSRA 201 (470)
Q Consensus 188 s~~lg~~v~V~Sr~ 201 (470)
..++-+++.+....
T Consensus 115 ~~~~~D~~~~~~~~ 128 (146)
T COG2172 115 AKRLMDEFSYERSE 128 (146)
T ss_pred HhhhheeEEEEecc
Confidence 34577788877444
No 97
>PF14501 HATPase_c_5: GHKL domain
Probab=93.79 E-value=0.15 Score=42.98 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=46.1
Q ss_pred HHHHHHHHchhhhhhC-C-CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccccc-
Q 012137 111 GAIAELLDNAVDEVQN-G-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS- 187 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~-g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~A- 187 (470)
.++++|+|||++|+.. . .+.|.|.+.. .++...|.|......-. .... +++ ...+.+|+||+..
T Consensus 8 ~il~nlldNAiea~~~~~~~~~I~i~~~~--~~~~~~i~i~N~~~~~~----~~~~----~~~---~~~~~~G~GL~~v~ 74 (100)
T PF14501_consen 8 RILGNLLDNAIEACKKYEDKRFISISIRE--ENGFLVIIIENSCEKEI----EKLE----SSS---SKKKGHGIGLKNVK 74 (100)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEEe--cCCEEEEEEEECCCCcc----cccc----ccc---cCCCCCCcCHHHHH
Confidence 4899999999999852 2 5678887764 45777888888755511 1111 111 1224479999753
Q ss_pred --ccccCCeEEEE
Q 012137 188 --TMRLGADVIVF 198 (470)
Q Consensus 188 --s~~lg~~v~V~ 198 (470)
..+.+..+.+.
T Consensus 75 ~i~~~y~g~~~~~ 87 (100)
T PF14501_consen 75 KILEKYNGSLSIE 87 (100)
T ss_pred HHHHHCCCEEEEE
Confidence 33445555543
No 98
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.40 E-value=0.13 Score=50.34 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=35.2
Q ss_pred HHHHHHHchhhhhhC--CCceEEEEEEEecCCCCceEEEEeCCCCCCHH
Q 012137 112 AIAELLDNAVDEVQN--GATFVKVDRVNIMKDNSPALVFIDDGGGMDPE 158 (470)
Q Consensus 112 AIaELIDNAiDA~~~--gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e 158 (470)
++-||+-||+.+... +...|.|.+.....++...+.|.|||.|++.+
T Consensus 126 iv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 126 IVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 789999999999642 34677777765322224789999999999965
No 99
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.51 E-value=0.32 Score=50.52 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=54.0
Q ss_pred HHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccccc-
Q 012137 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS- 187 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~A- 187 (470)
.+.++.|-+.|-=.+ ++|+.|.|.+. ..++...+.|.|||.|++..+...- .+|+||.-.
T Consensus 360 lyRv~QEaltNIErH--a~Atrv~ill~--~~~d~vql~vrDnG~GF~~~~~~~~---------------~~GiGLRNMr 420 (459)
T COG4564 360 LYRVVQEALTNIERH--AGATRVTILLQ--QMGDMVQLMVRDNGVGFSVKEALQK---------------RHGIGLRNMR 420 (459)
T ss_pred HHHHHHHHHHHHHhh--cCCeEEEEEec--cCCcceEEEEecCCCCccchhhccC---------------ccccccccHH
Confidence 444555555555444 38999999875 3567789999999999997765331 159998632
Q ss_pred --ccccCCeEEEEeeeCC
Q 012137 188 --TMRLGADVIVFSRATH 203 (470)
Q Consensus 188 --s~~lg~~v~V~Sr~~~ 203 (470)
.-.+|+.++|.|.+.+
T Consensus 421 ERma~~GG~~~v~s~p~G 438 (459)
T COG4564 421 ERMAHFGGELEVESSPQG 438 (459)
T ss_pred HHHHHhCceEEEEecCCC
Confidence 2347999999999863
No 100
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=86.29 E-value=1.6 Score=47.55 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=35.2
Q ss_pred HHHHHHHchhhhhh---CCCceEEEEEEEecCCCCceEEEEeCCCCCCHH
Q 012137 112 AIAELLDNAVDEVQ---NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPE 158 (470)
Q Consensus 112 AIaELIDNAiDA~~---~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e 158 (470)
.|-=||+||+.+.- .+...|.|.+.. .+...++.|+|||.|++++
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~--~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEK--EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEE--eCCeEEEEEecCCCCcCCC
Confidence 67889999999852 133467777765 4567999999999999997
No 101
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=66.02 E-value=19 Score=41.62 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=33.6
Q ss_pred HHHHHHHHHHchhhhhhCCC--ceEEEEEEEecCCCCceEEEEeCCCCCCHHH
Q 012137 109 AFGAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPES 159 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gA--~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~ 159 (470)
++...-|++.||.| ...++ ..+.+.+. .....+.|.+||.||+-+.
T Consensus 54 l~ki~dEilvNaad-k~rd~~m~~i~v~i~----~e~~~isv~nnGkGIPv~~ 101 (842)
T KOG0355|consen 54 LYKIFDEILVNAAD-KQRDPKMNTIKVTID----KEKNEISVYNNGKGIPVTI 101 (842)
T ss_pred HHHHHHHHhhcccc-cccCCCcceeEEEEc----cCCCEEEEEeCCCcceeee
Confidence 34489999999999 54444 34555553 2567899999999999754
No 102
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=41.68 E-value=41 Score=30.38 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=23.8
Q ss_pred eEEEEEEEecCCCCCCCceEEEEEcCeeecc
Q 012137 395 TAETTIGFIKEAPALSVSGFNVYHKNRLIRP 425 (470)
Q Consensus 395 ~v~i~~Gf~~~~~~~~~~G~~vY~nnRLI~~ 425 (470)
.++++ ||+..++..+....++|.|||.|..
T Consensus 27 ~~~v~-G~is~p~~~sk~~q~ifVN~R~v~~ 56 (141)
T cd03486 27 EYEVS-GYISSEGHYSKSFQFIYVNGRLYLK 56 (141)
T ss_pred cEEEE-EEEcCCCCCCCceEEEEECCEEech
Confidence 35674 8887665677889999999999973
No 103
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=34.74 E-value=52 Score=28.68 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=29.4
Q ss_pred eEEEEEEEecCC--CCCCCceEEEEEcCeeeccc--ccccc----cCCCccceEEeeeee
Q 012137 395 TAETTIGFIKEA--PALSVSGFNVYHKNRLIRPF--WKVTG----DGSLKGNGVVGIHTL 446 (470)
Q Consensus 395 ~v~i~~Gf~~~~--~~~~~~G~~vY~nnRLI~~~--~kv~~----~~~~~g~GviGVle~ 446 (470)
.++++ ||...+ ...+..++++|-|||+|..- .+... .....++--+.||..
T Consensus 22 ~~~i~-G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~i 80 (119)
T PF01119_consen 22 DFSIE-GYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLFI 80 (119)
T ss_dssp CEEEE-EEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEEE
T ss_pred CEEEE-EEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEEE
Confidence 35664 777654 24557899999999999853 12221 233456666666655
No 104
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=29.13 E-value=81 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=22.8
Q ss_pred eEEEEEEEecCCC--CCCCceEEEEEcCeeecc
Q 012137 395 TAETTIGFIKEAP--ALSVSGFNVYHKNRLIRP 425 (470)
Q Consensus 395 ~v~i~~Gf~~~~~--~~~~~G~~vY~nnRLI~~ 425 (470)
.++++ ||...+. .......++|-|||.|..
T Consensus 26 ~~~i~-G~is~p~~~r~~~~~q~ifVN~R~V~~ 57 (123)
T cd03482 26 GLRLS-GWIALPTFARSQADIQYFYVNGRMVRD 57 (123)
T ss_pred CEEEE-EEEeCchhccCCCCcEEEEEcCcEECC
Confidence 45664 8886653 556788999999999974
No 105
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=25.78 E-value=1e+02 Score=27.30 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=22.6
Q ss_pred eEEEEEEEecCC-CCCCCceEEEEEcCeeecc
Q 012137 395 TAETTIGFIKEA-PALSVSGFNVYHKNRLIRP 425 (470)
Q Consensus 395 ~v~i~~Gf~~~~-~~~~~~G~~vY~nnRLI~~ 425 (470)
.+++. ||...+ ...+...+++|-|||.|+.
T Consensus 31 ~~~i~-G~is~p~~~~~~~~q~~fVNgR~V~~ 61 (127)
T cd03483 31 GFKVK-GLISNANYSKKKIIFILFINNRLVEC 61 (127)
T ss_pred cEEEE-EEEcCchhcCCCceEEEEEcCCEecC
Confidence 46674 888654 2366778999999999985
No 106
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=25.14 E-value=70 Score=27.61 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=22.6
Q ss_pred eEEEEEEEecCCC--CCCCceEEEEEcCeeecc
Q 012137 395 TAETTIGFIKEAP--ALSVSGFNVYHKNRLIRP 425 (470)
Q Consensus 395 ~v~i~~Gf~~~~~--~~~~~G~~vY~nnRLI~~ 425 (470)
.++++ ||...+. .....+.++|.|||+|..
T Consensus 26 ~~~i~-G~is~~~~~~~~~~~q~~fVN~R~v~~ 57 (122)
T cd00782 26 DFRIS-GYISKPDFGRSSKDRQFLFVNGRPVRD 57 (122)
T ss_pred CEEEE-EEEECchhhcCCCccEEEEECCeEecC
Confidence 35664 8886553 567788999999999983
No 107
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=23.85 E-value=1.1e+02 Score=27.32 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=31.6
Q ss_pred eEEEEEEEecCC----CCCCCceEEEEEcCeeecc-c--cccccc-------CCCccceEEeeeee
Q 012137 395 TAETTIGFIKEA----PALSVSGFNVYHKNRLIRP-F--WKVTGD-------GSLKGNGVVGIHTL 446 (470)
Q Consensus 395 ~v~i~~Gf~~~~----~~~~~~G~~vY~nnRLI~~-~--~kv~~~-------~~~~g~GviGVle~ 446 (470)
.++++ ||+..+ ......+.++|-|||.|.. - -|...+ ....++--+.||.+
T Consensus 29 ~~~i~-G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~~~~~~~~P~~~L~i 93 (132)
T cd03485 29 QISLE-GFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYRKSSLRRYPVFFLNI 93 (132)
T ss_pred cEEEE-EEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHHHhccccccCCCEEEEEE
Confidence 35664 887554 2346789999999999985 1 122211 12456666777665
No 108
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=23.62 E-value=29 Score=28.94 Aligned_cols=22 Identities=41% Similarity=0.612 Sum_probs=18.0
Q ss_pred ccCcccccccccchhhHHHHHHHHHHchhhhh
Q 012137 93 RVHPKFLHSNATSHKWAFGAIAELLDNAVDEV 124 (470)
Q Consensus 93 ~~~p~fL~s~~tsH~w~f~AIaELIDNAiDA~ 124 (470)
---|+||+.+-| |+|+||++..
T Consensus 44 p~fPkFLn~LGt----------eIiEnAVefi 65 (88)
T PF15144_consen 44 PDFPKFLNLLGT----------EIIENAVEFI 65 (88)
T ss_pred CchHHHHHHhhH----------HHHHHHHHHH
Confidence 345789998766 8999999987
No 109
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=22.79 E-value=1.2e+02 Score=27.51 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=23.2
Q ss_pred ceEEEEEEEecCC----CCCCCceEEEEEcCeeecc
Q 012137 394 ATAETTIGFIKEA----PALSVSGFNVYHKNRLIRP 425 (470)
Q Consensus 394 ~~v~i~~Gf~~~~----~~~~~~G~~vY~nnRLI~~ 425 (470)
..++++ ||...+ ......+.++|-|||+|..
T Consensus 43 ~~~~i~-G~is~p~~~~~r~~~~~q~~fVN~R~V~~ 77 (142)
T cd03484 43 SEVKIT-GYISKPSHGCGRSSSDRQFFYINGRPVDL 77 (142)
T ss_pred CcEEEE-EEECCCcccCCCCCCCcEEEEECCeecCC
Confidence 346664 888654 3556788999999999975
No 110
>PF04008 Adenosine_kin: Adenosine specific kinase; InterPro: IPR007153 The structure of a member of this family from the hyperthermophilic archaeon Pyrobaculum aerophilum contains a modified histidine residue which is interpreted as stable phosphorylation. In vitro binding studies confirmed that adenosine and AMP but not ADP or ATP bind to the protein [].; PDB: 1VGG_A 1RLH_A 1WVQ_A 2GL0_F 2JB7_B 2EKM_C 2D16_D.
Probab=22.22 E-value=49 Score=30.84 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=13.9
Q ss_pred CCccceEEeeeeeee--cchh
Q 012137 434 SLKGNGVVGIHTLFV--GFFL 452 (470)
Q Consensus 434 ~~~g~GviGVle~f~--~~~~ 452 (470)
..+||||+||+|=|- |+|.
T Consensus 117 t~~GrgvlGVvDG~~p~GvE~ 137 (155)
T PF04008_consen 117 TEQGRGVLGVVDGFSPKGVET 137 (155)
T ss_dssp ESSEEEEEEEEESS--SEE--
T ss_pred cCCCcEEEEEEcCCCCCCccC
Confidence 459999999999865 7764
No 111
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.91 E-value=1.3e+02 Score=30.85 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=20.6
Q ss_pred hhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCC
Q 012137 121 VDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGM 155 (470)
Q Consensus 121 iDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM 155 (470)
+.+....+++|+|... .+..-++|.|||.|-
T Consensus 120 FAHvkGq~kEv~v~Ks----edalGlTITDNG~Gy 150 (334)
T KOG3938|consen 120 FAHVKGQAKEVEVVKS----EDALGLTITDNGAGY 150 (334)
T ss_pred hhhhcCcceeEEEEec----ccccceEEeeCCcce
Confidence 3333334667777543 356789999999983
Done!