Query 012137
Match_columns 470
No_of_seqs 306 out of 1420
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b63_A MUTL; DNA mismatch repa 99.7 8.8E-17 3E-21 163.3 12.2 90 107-204 23-119 (333)
2 3na3_A DNA mismatch repair pro 99.7 2.3E-16 8E-21 161.2 11.6 90 107-204 27-123 (348)
3 3h4l_A DNA mismatch repair pro 99.6 4.1E-16 1.4E-20 160.5 12.0 89 107-203 24-119 (367)
4 1h7s_A PMS1 protein homolog 2; 99.6 3.7E-16 1.3E-20 160.7 9.2 90 107-204 33-129 (365)
5 1y4s_A Chaperone protein HTPG; 99.5 2.8E-13 9.4E-18 146.1 14.3 92 109-203 28-145 (559)
6 2o1u_A Endoplasmin; GRP94, HSP 99.4 5.3E-13 1.8E-17 146.3 14.8 90 111-203 48-166 (666)
7 2ioq_A Chaperone protein HTPG; 99.4 2.9E-13 9.9E-18 147.6 10.4 91 110-203 29-145 (624)
8 2wer_A ATP-dependent molecular 99.4 4.5E-13 1.5E-17 128.4 5.8 90 111-203 29-142 (220)
9 2ior_A Chaperone protein HTPG; 99.4 3.1E-13 1.1E-17 131.0 4.6 94 108-204 47-166 (235)
10 1yc1_A HSP 86, heat shock prot 99.3 8.5E-13 2.9E-17 130.3 5.7 93 108-203 68-184 (264)
11 3t0h_A Heat shock protein HSP 99.3 1E-12 3.5E-17 127.1 5.7 90 111-203 35-148 (228)
12 3peh_A Endoplasmin homolog; st 99.3 3.4E-12 1.2E-16 126.7 9.2 90 111-203 49-163 (281)
13 2gqp_A Endoplasmin; GRP94, HSP 99.3 7.9E-13 2.7E-17 128.4 3.6 92 109-203 33-153 (236)
14 3nmq_A Heat shock protein HSP 99.3 2E-12 6.9E-17 125.8 6.3 90 111-203 42-155 (239)
15 3o0i_A HSP90AA1 protein; HSP90 99.3 1.4E-12 4.7E-17 128.1 4.6 90 111-203 63-176 (256)
16 1qy5_A Endoplasmin; GRP94, NEC 99.3 2.9E-12 1E-16 126.7 6.1 90 111-203 31-149 (269)
17 2cg9_A ATP-dependent molecular 99.2 4.8E-11 1.6E-15 131.0 10.2 90 111-203 29-142 (677)
18 3ied_A Heat shock protein; HSP 99.2 5E-11 1.7E-15 116.9 8.5 67 131-200 119-197 (272)
19 4duh_A DNA gyrase subunit B; s 99.1 1.6E-10 5.5E-15 111.2 7.1 109 87-202 14-137 (220)
20 3fv5_A DNA topoisomerase 4 sub 99.0 3.2E-10 1.1E-14 107.5 6.7 103 89-202 2-119 (201)
21 1ei1_A DNA gyrase B, GYRB; ATP 98.8 3.7E-09 1.3E-13 109.6 8.0 109 87-202 13-136 (391)
22 1s16_A Topoisomerase IV subuni 98.8 4.6E-09 1.6E-13 108.9 8.4 104 88-202 15-133 (390)
23 4emv_A DNA topoisomerase IV, B 98.7 7.8E-09 2.7E-13 99.8 6.3 121 70-202 7-141 (226)
24 2c2a_A Sensor histidine kinase 98.7 1.1E-08 3.7E-13 97.3 6.9 95 107-203 137-237 (258)
25 1id0_A PHOQ histidine kinase; 98.7 6.8E-08 2.3E-12 84.1 9.0 88 107-202 43-133 (152)
26 1mu5_A Type II DNA topoisomera 98.6 5E-08 1.7E-12 103.4 9.3 98 107-204 31-137 (471)
27 1i58_A Chemotaxis protein CHEA 98.6 3E-08 1E-12 90.1 5.8 92 109-202 48-177 (189)
28 1bxd_A ENVZ(290-450), protein 98.6 5.2E-08 1.8E-12 86.1 7.0 90 107-202 46-138 (161)
29 2q8g_A [pyruvate dehydrogenase 98.6 8.2E-08 2.8E-12 98.8 9.3 94 107-202 242-351 (407)
30 2btz_A Pyruvate dehydrogenase 98.6 8E-08 2.7E-12 98.4 9.1 94 107-202 230-338 (394)
31 2zbk_B Type 2 DNA topoisomeras 98.6 6.3E-08 2.2E-12 104.0 7.9 98 107-204 30-136 (530)
32 1ysr_A Sensor-type histidine k 98.6 1.2E-07 4E-12 82.7 8.0 90 107-202 45-137 (150)
33 3cwv_A DNA gyrase, B subunit, 98.6 4.1E-08 1.4E-12 101.1 5.8 104 87-202 10-119 (369)
34 1y8o_A [pyruvate dehydrogenase 98.6 1E-07 3.4E-12 98.7 8.4 94 107-202 252-362 (419)
35 2e0a_A Pyruvate dehydrogenase 98.6 1.2E-07 4.1E-12 97.2 8.8 94 107-202 229-338 (394)
36 3sl2_A Sensor histidine kinase 98.5 9.9E-08 3.4E-12 85.8 6.3 94 108-202 43-140 (177)
37 1kij_A DNA gyrase subunit B; t 98.5 6.2E-08 2.1E-12 100.4 5.4 107 88-202 13-134 (390)
38 1gkz_A [3-methyl-2-oxobutanoat 98.5 1.1E-07 3.8E-12 97.0 7.0 94 107-202 237-361 (388)
39 1r62_A Nitrogen regulation pro 98.5 1.4E-07 4.7E-12 82.3 6.1 88 107-201 47-147 (160)
40 1b3q_A Protein (chemotaxis pro 98.5 2.3E-07 8E-12 95.0 8.7 93 109-203 107-237 (379)
41 1zxm_A TOPO IIA ATPase, DNA to 98.5 1.2E-07 4.1E-12 98.6 6.6 92 106-202 50-156 (400)
42 3d36_A Sporulation kinase B; G 98.5 3.4E-07 1.2E-11 85.1 8.4 89 107-202 122-213 (244)
43 3lnu_A Topoisomerase IV subuni 98.4 1.4E-07 4.8E-12 98.2 6.1 104 88-202 34-152 (408)
44 3a0y_A Sensor protein; ATP-LID 98.4 5E-07 1.7E-11 78.2 8.2 87 107-201 46-136 (152)
45 4ew8_A Sensor protein DIVL; si 98.4 4.9E-07 1.7E-11 85.8 8.3 88 107-202 154-244 (268)
46 3jz3_A Sensor protein QSEC; he 98.4 1.4E-07 4.9E-12 86.4 4.4 89 108-205 117-208 (222)
47 2q2e_B Type 2 DNA topoisomeras 98.4 3E-07 1E-11 100.4 6.3 96 107-203 36-140 (621)
48 1th8_A Anti-sigma F factor; SP 98.3 1.3E-06 4.3E-11 76.2 7.3 87 108-202 39-127 (145)
49 3ehg_A Sensor kinase (YOCF pro 98.1 2.2E-06 7.6E-11 73.3 5.4 74 107-201 39-115 (128)
50 3a0r_A Sensor protein; four he 98.1 1.1E-06 3.7E-11 86.2 3.8 87 107-201 243-333 (349)
51 3ehh_A Sensor kinase (YOCF pro 98.0 5.9E-06 2E-10 76.0 6.7 73 108-201 130-205 (218)
52 1pvg_A DNA topoisomerase II; G 98.0 6.7E-06 2.3E-10 85.9 7.3 90 107-201 63-167 (418)
53 3zxo_A Redox sensor histidine 97.9 1E-05 3.4E-10 68.5 5.7 71 107-202 42-115 (129)
54 3zxq_A Hypoxia sensor histidin 97.9 1.3E-05 4.6E-10 67.3 6.4 71 107-202 38-111 (124)
55 4fpp_A Phosphotransferase; fou 97.9 1.3E-05 4.3E-10 76.8 6.8 86 108-201 146-236 (247)
56 3ttz_A DNA gyrase subunit B; p 97.9 8E-06 2.8E-10 77.1 4.2 96 88-202 12-110 (198)
57 1ixm_A SPO0B, protein (sporula 97.8 7.4E-06 2.5E-10 77.0 2.0 93 58-169 74-171 (192)
58 4gfh_A DNA topoisomerase 2; to 97.3 0.00028 9.6E-09 82.1 7.4 108 88-200 17-161 (1177)
59 3ke6_A Protein RV1364C/MT1410; 95.0 0.025 8.6E-07 57.9 5.8 75 108-200 297-373 (399)
60 2d16_A Hypothetical protein PH 23.6 31 0.001 31.1 1.7 19 434-452 123-143 (162)
61 1wvq_A Hypothetical protein PA 23.3 29 0.00098 31.4 1.4 21 432-452 126-148 (167)
62 2ekm_A Hypothetical protein ST 23.3 31 0.0011 31.0 1.7 19 434-452 124-144 (162)
63 1rlh_A Conserved hypothetical 23.3 32 0.0011 31.1 1.8 19 434-452 135-155 (173)
64 1vgg_A Conserved hypothetical 22.1 31 0.0011 31.0 1.4 19 434-452 123-143 (161)
65 4h62_V Mediator of RNA polymer 21.9 48 0.0016 21.3 1.9 14 112-125 13-26 (31)
No 1
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.69 E-value=8.8e-17 Score=163.31 Aligned_cols=90 Identities=20% Similarity=0.336 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------CCCCCc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-------~~~iG~ 179 (470)
..|.++|.|||+||+|| +|+.|.|.+.. ++...|+|.|||.||+++++..+|..++++|.. ...+|.
T Consensus 23 ~~~~~~v~ELi~NaidA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~ 96 (333)
T 1b63_A 23 ERPASVVKELVENSLDA---GATRIDIDIER---GGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGF 96 (333)
T ss_dssp SSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCC
T ss_pred hCHHHHHHHHHHHHHHC---CCCeEEEEEEe---CCceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCc
Confidence 46778999999999999 78999998852 345789999999999999999999866666653 247899
Q ss_pred ccccccccccccCCeEEEEeeeCCC
Q 012137 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (470)
Q Consensus 180 fGiGlK~As~~lg~~v~V~Sr~~~~ 204 (470)
+|+||.+ ....++++|.|++.++
T Consensus 97 ~G~gl~s--i~~vs~l~v~s~~~~~ 119 (333)
T 1b63_A 97 RGEALAS--ISSVSRLTLTSRTAEQ 119 (333)
T ss_dssp SSCHHHH--HHTTSEEEEEEECTTC
T ss_pred cccchhh--hhcCCcEEEEEecCCC
Confidence 9999854 3334489999998653
No 2
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=161.24 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------CCCCCc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-------~~~iG~ 179 (470)
..|.++|.|||+||+|| +|+.|.|.+. .++...|+|.|||+||+++++..+|.+++++|.. ..+.|.
T Consensus 27 ~~~~~vv~eLv~NAidA---~a~~I~I~i~---~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~Gf 100 (348)
T 3na3_A 27 QRPANAIKEMIENCLDA---KSTSIQVIVK---EGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGF 100 (348)
T ss_dssp CSHHHHHHHHHHHHHHT---TCSEEEEEEE---GGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CC
T ss_pred cCHHHHHHHHHHHHHHc---CCCEEEEEEE---eCCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCc
Confidence 56778999999999999 8999999885 2345679999999999999999999999988865 246799
Q ss_pred ccccccccccccCCeEEEEeeeCCC
Q 012137 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (470)
Q Consensus 180 fGiGlK~As~~lg~~v~V~Sr~~~~ 204 (470)
+|.||.+ ..+++ +++|.||+.++
T Consensus 101 rGeaL~S-i~avs-~l~v~sr~~~~ 123 (348)
T 3na3_A 101 RGEALAS-ISHVA-HVTITTKTADG 123 (348)
T ss_dssp TTCHHHH-HHHSS-EEEEEEECTTC
T ss_pred CChHHHH-hhccc-EEEEEEEECCC
Confidence 9999853 33455 89999998753
No 3
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.1e-16 Score=160.54 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------CCCCCc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-------~~~iG~ 179 (470)
..|.++|.||||||+|| +|+.|.|.+. .++...|+|.|||+||+++++..++..++++|.. ..+.|.
T Consensus 24 ~~~~~vv~eLv~NaiDA---~a~~I~I~i~---~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~Gf 97 (367)
T 3h4l_A 24 TDLTTAVKELVDNSIDA---NANQIEIIFK---DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGF 97 (367)
T ss_dssp CSHHHHHHHHHHHHHHT---TCSEEEEEEE---TTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEE
T ss_pred cCHHHHHHHHHHHHHHC---CCCEEEEEEE---eCCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCc
Confidence 56777999999999999 8999999874 3456789999999999999999999988888764 134577
Q ss_pred ccccccccccccCCeEEEEeeeCC
Q 012137 180 YGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 180 fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
+|.||. +..+++ +++|.||+.+
T Consensus 98 rGeaL~-Si~avS-~l~V~sr~~~ 119 (367)
T 3h4l_A 98 RGEALS-SLCGIA-KLSVITTTSP 119 (367)
T ss_dssp TTHHHH-HHHHSS-EEEEEEESST
T ss_pred cchHHH-HhhccC-EEEEEEEECC
Confidence 788885 334455 7999999864
No 4
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.63 E-value=3.7e-16 Score=160.74 Aligned_cols=90 Identities=21% Similarity=0.276 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCC-------CCCCc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN-------KTIGQ 179 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~-------~~iG~ 179 (470)
..|.++|.|||+||+|| +++.|.|.+.. ++...|+|.|||.||+++++.++|..++++|... .+.|.
T Consensus 33 ~~~~~vl~eLv~NAiDA---~a~~I~I~i~~---~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~ 106 (365)
T 1h7s_A 33 LSLSTAVKELVENSLDA---GATNIDLKLKD---YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGF 106 (365)
T ss_dssp CCHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESS
T ss_pred hhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCC
Confidence 45677999999999999 78999988852 3457899999999999999999998777766541 23587
Q ss_pred ccccccccccccCCeEEEEeeeCCC
Q 012137 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (470)
Q Consensus 180 fGiGlK~As~~lg~~v~V~Sr~~~~ 204 (470)
+|+||.+ ...++ +++|.|++.++
T Consensus 107 rG~gl~s-i~~vs-~v~v~t~~~~~ 129 (365)
T 1h7s_A 107 RGEALSS-LCALS-DVTISTCHASA 129 (365)
T ss_dssp SSSHHHH-HHHHS-EEEEEEECTTC
T ss_pred CCchhhh-hhhhc-cEEEEEccCCC
Confidence 8888753 34456 99999998653
No 5
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.47 E-value=2.8e-13 Score=146.13 Aligned_cols=92 Identities=26% Similarity=0.356 Sum_probs=68.6
Q ss_pred HHHHHHHHHHchhhhhh-------------CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCccccc--
Q 012137 109 AFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK-- 172 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~-------------~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K~-- 172 (470)
+..+|.|||.||+||.. ..++.+.|.+..+. +...|.|.|||.||+++++.+.+ +.++|.+.
T Consensus 28 ~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f 105 (559)
T 1y4s_A 28 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSF 105 (559)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHSCCSCCCCCCT
T ss_pred hHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEEEEECCCCCCHHHHHHHHhhhcccccHHH
Confidence 34699999999999961 11333444444322 34689999999999999998766 47777532
Q ss_pred ----------CCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 173 ----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 173 ----------~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
+...||+||+||++ ++.++++++|.|++.+
T Consensus 106 ~e~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~ 145 (559)
T 1y4s_A 106 LESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 145 (559)
T ss_dssp TCC--------CCCCSSCCCSGGG-HHHHEEEEEEEEECSS
T ss_pred HHHhhccccccccccCCCCcchhh-hhhccCeEEEEEcCCC
Confidence 24578999999985 6669999999999865
No 6
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.45 E-value=5.3e-13 Score=146.27 Aligned_cols=90 Identities=29% Similarity=0.377 Sum_probs=57.7
Q ss_pred HHHHHHHHchhhhhh-------------CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhh-cCcccc-----
Q 012137 111 GAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTK----- 171 (470)
Q Consensus 111 ~AIaELIDNAiDA~~-------------~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~-~G~S~K----- 171 (470)
.+|.|||.||+||.. ..+..+.|.+..+. +...|+|.|||.||+++++...|. .+.|.+
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~tIA~SGtk~f~~ 125 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLN 125 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHTTC-----------
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeC--CCCEEEEEECCCCCCHHHHHHHHhhhcccccHHHHH
Confidence 489999999999962 01444555554332 447899999999999999987664 666622
Q ss_pred ----------cCCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 172 ----------KANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 172 ----------~~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
.+...||+||+||+++ |.++++++|.||+.+
T Consensus 126 kl~~~~~~~~~d~~~IGqFGvGfySa-f~vAdkV~V~Sr~~~ 166 (666)
T 2o1u_A 126 KMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNN 166 (666)
T ss_dssp --------------------CTTGGG-GGTEEEEEEEEECTT
T ss_pred HhhhcccccccchhhccCCCcHHHhH-HHhcCEEEEEEeeCC
Confidence 1245789999999865 779999999999864
No 7
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.42 E-value=2.9e-13 Score=147.62 Aligned_cols=91 Identities=26% Similarity=0.361 Sum_probs=66.4
Q ss_pred HHHHHHHHHchhhhhh-------------CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCccccc---
Q 012137 110 FGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK--- 172 (470)
Q Consensus 110 f~AIaELIDNAiDA~~-------------~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K~--- 172 (470)
..+|.|||+||+||.. ..++.+.|.+..+. +...|+|.|||.||+++++.+.+ +.+.|.+.
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~ 106 (624)
T 2ioq_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFL 106 (624)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeC--CCcEEEEEECCCCCCHHHHHHHHHhhcccccHHHH
Confidence 3589999999999961 11443444444322 34789999999999999998765 47777532
Q ss_pred ---------CCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 173 ---------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 173 ---------~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
+...||+||+||++ ++.++++++|.||+.+
T Consensus 107 ~~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~ 145 (624)
T 2ioq_A 107 ESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 145 (624)
T ss_dssp --------CCTTHHHHHHHHHHH-HHHHEEEEEEEEECTT
T ss_pred HHhcccccccccccCCCCccHHH-HHhcCCeEEEEECCCC
Confidence 24568999999985 5668999999999865
No 8
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.35 E-value=4.5e-13 Score=128.43 Aligned_cols=90 Identities=23% Similarity=0.306 Sum_probs=68.6
Q ss_pred HHHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCccccc----
Q 012137 111 GAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK---- 172 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K~---- 172 (470)
.+|.|||+||+||... ....+.|.+..+ .+...|.|.|||.||+++++.++| ++++|.+.
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~--~~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~ 106 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPK--PEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFME 106 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEE--GGGTEEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEEC--CCCCEEEEEEcCCCCCHHHHHHHHHhHhcccchhHHH
Confidence 5999999999999631 123455555432 246789999999999999998766 57776431
Q ss_pred ------CCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 173 ------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 173 ------~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
+...+|+||+||++ ++.++++++|.|++.+
T Consensus 107 k~~~~~~~~~iG~fGiG~~s-~~~~~~~v~v~S~~~~ 142 (220)
T 2wer_A 107 ALSAGADVSMIGQFGVGFYS-LFLVADRVQVISKSND 142 (220)
T ss_dssp HHTTTCCGGGGGGGTCGGGG-GGGTEEEEEEEEECTT
T ss_pred HhhccCCcccCCccchhHHH-hhhcCCeeEEEEecCC
Confidence 24578999999974 5779999999999864
No 9
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.35 E-value=3.1e-13 Score=131.01 Aligned_cols=94 Identities=27% Similarity=0.350 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHchhhhhh-------------CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCccccc-
Q 012137 108 WAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK- 172 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~-------------~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K~- 172 (470)
.|..+|.|||+||+||.. ..++.+.|.+..+. +...|.|.|||.||+++++..+| ++++|.+.
T Consensus 47 ~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~--~~~~i~I~DnG~GMs~edl~~~~~~ia~S~~~~ 124 (235)
T 2ior_A 47 NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKS 124 (235)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHTTCCCTTHHH
T ss_pred CHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcC--CceEEEEEECCCCCCHHHHHHHHHHHccccccc
Confidence 445699999999999962 11444555554322 34579999999999999998765 57776532
Q ss_pred -----------CCCCCCcccccccccccccCCeEEEEeeeCCC
Q 012137 173 -----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATHE 204 (470)
Q Consensus 173 -----------~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~~ 204 (470)
....+|+||+||+++ |.++++++|.|++.++
T Consensus 125 f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~ 166 (235)
T 2ior_A 125 FLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGE 166 (235)
T ss_dssp HHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTS
T ss_pred hhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCC
Confidence 135679999999955 7899999999998653
No 10
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.32 E-value=8.5e-13 Score=130.26 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCccccc-
Q 012137 108 WAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK- 172 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K~- 172 (470)
.|..+|.|||+||+||... ..+.+.|.+..+ .+...|.|.|||.||+++++..+| +++.|.+.
T Consensus 68 ~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d--~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~ 145 (264)
T 1yc1_A 68 NKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPN--KQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKA 145 (264)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEEC--CCeeEEEEEECCcCCCHHHHHHHHHhhccccchh
Confidence 3446999999999999530 125666776532 346789999999999999998765 47776532
Q ss_pred ---------CCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 173 ---------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 173 ---------~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
+...+|+||+||+++ +.++++++|.|++.+
T Consensus 146 f~~~l~~~~d~~~iG~fGiGf~S~-f~va~~v~V~Sr~~~ 184 (264)
T 1yc1_A 146 FMEALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHND 184 (264)
T ss_dssp HHHHHHTTCCGGGGGGGTCGGGGH-HHHEEEEEEEEECTT
T ss_pred hhhhhccccchhhcCCCCCCcccc-ccCCCEEEEEEecCC
Confidence 245789999999865 559999999999864
No 11
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.31 E-value=1e-12 Score=127.08 Aligned_cols=90 Identities=21% Similarity=0.379 Sum_probs=68.4
Q ss_pred HHHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhh-cCcccc-----
Q 012137 111 GAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTK----- 171 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~-~G~S~K----- 171 (470)
.+|.|||.||+||... ....+.|.+.. +.+...|.|.|||.||+++++..+|. .+.|.+
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~--d~~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~ 112 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP--NKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 112 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE--ETTTTEEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE--eCCeeEEEEEeCCCCCCHHHHHHHHHhhccccchhhhh
Confidence 5899999999999631 11245566543 23567899999999999999987664 666543
Q ss_pred -----cCCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 172 -----KANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 172 -----~~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
.....+|+||+||+++ +.++.+++|.||+.+
T Consensus 113 ~l~~~~~~~~iG~fG~G~~S~-~~vad~v~V~Sr~~~ 148 (228)
T 3t0h_A 113 ALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHND 148 (228)
T ss_dssp HHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred hhcccCCcccCCCCChhHHHH-hccCCEEEEEEecCC
Confidence 2356789999999976 559999999999864
No 12
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.31 E-value=3.4e-12 Score=126.73 Aligned_cols=90 Identities=23% Similarity=0.368 Sum_probs=68.0
Q ss_pred HHHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCcccc-----
Q 012137 111 GAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTK----- 171 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K----- 171 (470)
.+|.|||.||.||... ....+.|.+..+ .....|.|.|||.||+++++.+.+ ..++|.+
T Consensus 49 ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d--~~~~tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e 126 (281)
T 3peh_A 49 VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISAN--KEKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFLE 126 (281)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEc--CCCcEEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHH
Confidence 4899999999999731 113355555433 345789999999999999998765 4665532
Q ss_pred ------cCCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 172 ------KANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 172 ------~~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
.+...||+||+||+++ |.+|.+++|.|+..+
T Consensus 127 ~l~~~~~d~~~IGqFGVGFySa-f~vadkV~V~Sk~~~ 163 (281)
T 3peh_A 127 AISKSGGDMSLIGQFGVGFYSA-FLVADKVIVYTKNND 163 (281)
T ss_dssp HHHHTTCCSTTTTTTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred hhhccccccccccccCccchhh-ccccCEEEEEEecCC
Confidence 2357899999999876 669999999999864
No 13
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.29 E-value=7.9e-13 Score=128.38 Aligned_cols=92 Identities=28% Similarity=0.367 Sum_probs=64.9
Q ss_pred HHHHHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCccccc--
Q 012137 109 AFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK-- 172 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K~-- 172 (470)
+..+|.|||+||+||... ....+.|.+..+ .+...|.|.|||.||+++++.++| ++++|.+.
T Consensus 33 ~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d--~~~~~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f 110 (236)
T 2gqp_A 33 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD--KEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEF 110 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHHHCC--------
T ss_pred chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEc--CCCCEEEEEECCcCCCHHHHHHHHhhhcccccHhH
Confidence 346999999999999630 123345555432 245689999999999999998766 47777432
Q ss_pred -------------CCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 173 -------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 173 -------------~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
+...||+||+||++ .|.++++++|.|+..+
T Consensus 111 ~~kl~~~~~~~~~d~~~iG~fGiG~~S-~f~va~~v~V~Sr~~~ 153 (236)
T 2gqp_A 111 LNKMTEAQEDGQSTSELIGQFGVGFYS-AFLVADKVIVTSKHNN 153 (236)
T ss_dssp -------------CHHHHHHTTCGGGG-GGGTEEEEEEEEECTT
T ss_pred HHHhhccccccccchhhcCCCCcchhh-HhhcCCEEEEEEeCCC
Confidence 12357999999985 6779999999999864
No 14
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.29 E-value=2e-12 Score=125.75 Aligned_cols=90 Identities=24% Similarity=0.405 Sum_probs=67.7
Q ss_pred HHHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCcccc-----
Q 012137 111 GAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTK----- 171 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K----- 171 (470)
.+|.|||.||.||... ....+.|.+..+ .....|.|.|||.||+++++.+.+ +.++|.+
T Consensus 42 ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d--~~~~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e 119 (239)
T 3nmq_A 42 IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPN--PQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 119 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEe--CCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhh
Confidence 4899999999999631 112355655433 356789999999999999996654 4666532
Q ss_pred -----cCCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 172 -----KANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 172 -----~~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
.+...||+||+||+++ |.++.+++|.||..+
T Consensus 120 ~~~~~~d~~~IGqFGvGfySa-f~vadkv~V~Sk~~~ 155 (239)
T 3nmq_A 120 ALQAGADISMIGQFGVGFYSA-YLVAEKVVVITKHND 155 (239)
T ss_dssp HHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred hhcccCCcccccccCcccccc-cccCCEEEEEEeeCC
Confidence 1356789999999975 669999999999864
No 15
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.28 E-value=1.4e-12 Score=128.12 Aligned_cols=90 Identities=21% Similarity=0.370 Sum_probs=68.4
Q ss_pred HHHHHHHHchhhhhhC-------------CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCcccc-----
Q 012137 111 GAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTK----- 171 (470)
Q Consensus 111 ~AIaELIDNAiDA~~~-------------gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K----- 171 (470)
.+|.|||.||+||... ....+.|.+..+ .+...|.|.|||.||+++++..+| +.+.|.+
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d--~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~ 140 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPN--KQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 140 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEc--CCceEEEEecCCCCcCHHHHHHHHHhhccccccchhh
Confidence 4899999999999631 112456665432 356789999999999999998766 4665533
Q ss_pred -----cCCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 172 -----KANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 172 -----~~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
.....+|+||+||+++ +.++++++|.||+.+
T Consensus 141 ~L~~~~~~~~iG~fG~Gf~S~-f~Vadkv~V~Sr~~~ 176 (256)
T 3o0i_A 141 ALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHND 176 (256)
T ss_dssp HHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred hhcccCCccccCCCcchHHHh-hccCCeEEEEEcCCC
Confidence 2356889999999976 559999999999864
No 16
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.27 E-value=2.9e-12 Score=126.75 Aligned_cols=90 Identities=29% Similarity=0.388 Sum_probs=68.0
Q ss_pred HHHHHHHHchhhhhh-------------CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCcccc-----
Q 012137 111 GAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTK----- 171 (470)
Q Consensus 111 ~AIaELIDNAiDA~~-------------~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K----- 171 (470)
.+|.|||.||+||.. .....+.|.+..+ .+...|.|.|||.||+++++.+.| ++++|.+
T Consensus 31 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d--~~~~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~ 108 (269)
T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD--KEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLN 108 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEc--CCceEEEEEECCCCCCHHHHHHHhhhhcccccHHHHH
Confidence 489999999999963 0124455655432 356789999999999999987765 5777632
Q ss_pred ----------cCCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 172 ----------KANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 172 ----------~~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
.+...||+||+||+++ |.++.+++|.|++.+
T Consensus 109 kl~~~~~~~~~d~~~IG~fGvGfySa-f~va~~v~V~Sk~~~ 149 (269)
T 1qy5_A 109 KMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNN 149 (269)
T ss_dssp HHHHHHHHTCCCHHHHHHTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred hhhhcccccccchhhcCCccccHHHH-hhccceEEEEEEecC
Confidence 2234679999999865 669999999999864
No 17
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.17 E-value=4.8e-11 Score=130.96 Aligned_cols=90 Identities=24% Similarity=0.305 Sum_probs=67.8
Q ss_pred HHHHHHHHchhhhhh-------------CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCccccc----
Q 012137 111 GAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK---- 172 (470)
Q Consensus 111 ~AIaELIDNAiDA~~-------------~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K~---- 172 (470)
.+|.|||.||+||.. ..+..+.|.+..+. +...|+|.|||.||+++++.++| +.++|.+.
T Consensus 29 ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~ 106 (677)
T 2cg9_A 29 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFME 106 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEG--GGTEEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHS
T ss_pred HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeC--CCCEEEEEECCCCCCHHHHHHHHHhHhccccHHHHH
Confidence 489999999999973 01233444444322 34689999999999999998776 46666331
Q ss_pred ------CCCCCCcccccccccccccCCeEEEEeeeCC
Q 012137 173 ------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (470)
Q Consensus 173 ------~~~~iG~fGiGlK~As~~lg~~v~V~Sr~~~ 203 (470)
+...||+||+||++| |.++++++|.||+.+
T Consensus 107 kl~~~~d~~~IGqFGvGFySa-f~vadkV~V~Sk~~~ 142 (677)
T 2cg9_A 107 ALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND 142 (677)
T ss_dssp CCCSSCCCCCCCCTTCTTGGG-GGTEEEEEEEEECTT
T ss_pred hhhcccchhhcCCCCchhHHH-hhcCcEEEEEEccCC
Confidence 246789999999865 779999999999875
No 18
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.16 E-value=5e-11 Score=116.89 Aligned_cols=67 Identities=25% Similarity=0.422 Sum_probs=52.0
Q ss_pred EEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh-hcCcccc-----------cCCCCCCcccccccccccccCCeEEEE
Q 012137 131 VKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTK-----------KANKTIGQYGNGFKTSTMRLGADVIVF 198 (470)
Q Consensus 131 V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~-~~G~S~K-----------~~~~~iG~fGiGlK~As~~lg~~v~V~ 198 (470)
+.|.+..+ .....|.|.|||.||+++++.+.| ..++|.+ .+...||+||+||++| |.+|.+++|.
T Consensus 119 l~I~I~~D--k~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySa-FmVAdkV~V~ 195 (272)
T 3ied_A 119 LIIKIKPD--KEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSS-FLVSNRVEVY 195 (272)
T ss_dssp CCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGG-GGTEEEEEEE
T ss_pred cEEEEEEe--CCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceehee-eccCCEEEEE
Confidence 34555433 356789999999999999998766 4666632 2356789999999975 6699999999
Q ss_pred ee
Q 012137 199 SR 200 (470)
Q Consensus 199 Sr 200 (470)
||
T Consensus 196 Sk 197 (272)
T 3ied_A 196 TK 197 (272)
T ss_dssp EE
T ss_pred Ec
Confidence 99
No 19
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.06 E-value=1.6e-10 Score=111.18 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=75.8
Q ss_pred CcccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhC-CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHH----
Q 012137 87 GSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL---- 160 (470)
Q Consensus 87 ~~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~-gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l---- 160 (470)
..+++++..| +|+-+... ..-|..++.||||||+|++.+ .++.|.|.+. . + ..|+|.|||.||+.+..
T Consensus 14 ~~le~vr~rPgmYiG~~~~-~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~--~-~--g~i~V~DnGrGIp~~~~~~~~ 87 (220)
T 4duh_A 14 KGLDAVRKRPGMYIGDTDD-GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH--A-D--NSVSVQDDGRGIPTGIHPEEG 87 (220)
T ss_dssp -CHHHHHHSTHHHHCCSSS-SHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEC--T-T--SCEEEEECSSCCCCSEETTTT
T ss_pred chhHHHHhCCceEECCCCC-cccHHHHHHHHHHHHHHHHhcCCCCEEEEEEe--C-C--CcEEEEECCcCcccccccccC
Confidence 3788999999 66644332 257788999999999999754 4888999874 2 2 37999999999999863
Q ss_pred ----HHhhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 161 ----RKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 161 ----~~~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
+-+|. +..++|.+ ..+.|.+|+|++ +.-++...++|.++..
T Consensus 88 ~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~s-vvNAlS~~l~v~v~r~ 137 (220)
T 4duh_A 88 VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS-VVNALSQKLELVIQRE 137 (220)
T ss_dssp EEHHHHHHHSTTCSSCCCTTC--------CCCHH-HHHHTEEEEEEEEEET
T ss_pred cchhhheeeecccCCCcCCCccccccCccceecc-hhcccccceEEEEEEC
Confidence 44553 55555554 456799999997 4556888899999874
No 20
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.01 E-value=3.2e-10 Score=107.48 Aligned_cols=103 Identities=30% Similarity=0.300 Sum_probs=63.3
Q ss_pred ccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhCC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHH-------
Q 012137 89 LEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES------- 159 (470)
Q Consensus 89 ~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~------- 159 (470)
+++++.-| +|+-+. .|..++.|||+||+||...+ |+.|.|.+. .+ ..|+|.|||.||+.++
T Consensus 2 le~vr~rpgmyig~~-----~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~---~~--g~i~V~DnG~GIp~~~~~~~~~~ 71 (201)
T 3fv5_A 2 LEPVRRRPGMYTDTT-----RPNHLGQEVIDNSVDEALAGHAKRVDVILH---AD--QSLEVIDDGRGMPVDIHPEEGVP 71 (201)
T ss_dssp CHHHHHCGGGTSCTT-----STHHHHHHHHHHHHHHHHTTCCSEEEEEEC---TT--SCEEEEECSSCCCCSBCTTCSSB
T ss_pred chhhccCCccEECCC-----ChhhhhHHHHHHHHHHHhcCCCcEEEEEEe---CC--CEEEEEECCCCcCcccccccCcc
Confidence 34556666 555442 12569999999999998766 899999884 22 3799999999999987
Q ss_pred -HHHh-hhcCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 160 -LRKC-MSLGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 160 -l~~~-~~~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
++.+ ..+..++|.+ ..+.|..|.|+++ ..+++..++|.|+..
T Consensus 72 ~~e~i~~~~hatsK~~~~~~~~s~GfrGeglss-inalS~~l~v~t~~~ 119 (201)
T 3fv5_A 72 AVELILCRLHAGGKFSNKNYQFSGGLHGVGISV-VNALSKRVEVNVRRD 119 (201)
T ss_dssp HHHHHHHCC---------------------CHH-HHHTEEEEEEEEEET
T ss_pred hhheeeeeeccccCcCCCcccccCcccceecch-hhcccceEEEEEEec
Confidence 4443 4566666654 3467999999974 455777899999974
No 21
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.84 E-value=3.7e-09 Score=109.60 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=83.4
Q ss_pred CcccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhCC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHH-----
Q 012137 87 GSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES----- 159 (470)
Q Consensus 87 ~~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~----- 159 (470)
..+++++.-| +|+-+... ..-|..++.||||||+|++.+| ++.|.|.+.. + ..|+|.|||.||+.+.
T Consensus 13 ~gle~vrkRPgmYiGst~~-~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~~~~~~ 86 (391)
T 1ei1_A 13 KGLDAVRKRPGMYIGDTDD-GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---D--NSVSVQDDGRGIPTGIHPEEG 86 (391)
T ss_dssp CTTHHHHHCTHHHHCCSSS-SHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---T--SCEEEEECSSCCCCSBCTTTS
T ss_pred chhHHHHcCCCeEECCCCC-CcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---C--CEEEEEECCCCcccCcccccC
Confidence 3888999999 66655433 1267889999999999998766 8999998842 2 2899999999999987
Q ss_pred ---HHHhhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 160 ---LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 160 ---l~~~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
++-+|. +..++|.+ ..+.|.+|+|++. .-+++..++|.|+..
T Consensus 87 ~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~-vnalS~~l~v~~~r~ 136 (391)
T 1ei1_A 87 VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV-VNALSQKLELVIQRE 136 (391)
T ss_dssp SBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHH-HHHTEEEEEEEEEET
T ss_pred cchHHHhheeccccCCcCCCcccccCCccccchHH-HHHhcCeEEEEEEeC
Confidence 555676 66666654 3467999999974 455777899999864
No 22
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.84 E-value=4.6e-09 Score=108.89 Aligned_cols=104 Identities=30% Similarity=0.311 Sum_probs=80.1
Q ss_pred cccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhCC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHH------
Q 012137 88 SLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES------ 159 (470)
Q Consensus 88 ~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~------ 159 (470)
.+++++.-| +|+-+... ..++.||||||+|++..+ ++.|.|.+.. + ..|+|.|||.||+.++
T Consensus 15 gle~vr~RPgmYiGs~~~-----~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~~~~~~~ 84 (390)
T 1s16_A 15 GLEPVRRRPGMYTDTTRP-----NHLGQEVIDNSVDEALAGHAKRVDVILHA---D--QSLEVIDDGRGMPVDIHPEEGV 84 (390)
T ss_dssp TTHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEEEECSSCCCCSBCTTTCS
T ss_pred hhHHHhhCCceeecCCcH-----HHHHHHHHHHHHHHHhcCCCCEEEEEEec---C--CEEEEEECCCCcCcccccccCc
Confidence 788999999 67765544 348999999999987655 8999998842 2 2799999999999988
Q ss_pred --HHHhhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 160 --LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 160 --l~~~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
++.+|. +..++|.+ ..+.|.+|+|++ +.-+++..++|.|+..
T Consensus 85 ~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls-~vnalS~~l~v~~~r~ 133 (390)
T 1s16_A 85 PAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS-VVNALSKRVEVNVRRD 133 (390)
T ss_dssp BHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHH-HHHHTEEEEEEEEEET
T ss_pred chhhheeeeecccCCcCCCcccccCCccccchH-HHHHhhcccEEEEEEC
Confidence 677776 46666643 346799999997 4455777899999864
No 23
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.75 E-value=7.8e-09 Score=99.81 Aligned_cols=121 Identities=22% Similarity=0.202 Sum_probs=77.9
Q ss_pred hccccCcccccccCCCcCcccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhC-CCceEEEEEEEecCCCCceEE
Q 012137 70 KAGTYAANITIKSTPVQGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALV 147 (470)
Q Consensus 70 kA~~~~~~~~~~~~~~~~~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~-gA~~V~I~i~~~~~~~~~~i~ 147 (470)
++.+|+. .. +.--..+++++..| .|+-+.. ..-+..++.||||||+|++.+ .++.|.|.+. . + ..|+
T Consensus 7 ~~~~y~~-~~---i~~l~~le~vr~RPgmYiGs~~--~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~--~-~--g~i~ 75 (226)
T 4emv_A 7 NINNYND-DA---IQVLEGLDAVRKRPGMYIGSTD--GAGLHHLVWEIVDNAVDEALSGFGDRIDVTIN--K-D--GSLT 75 (226)
T ss_dssp --------------CCCBCTHHHHHCHHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC--T-T--SCEE
T ss_pred chhcCCh-hh---cEEcchhHHHhhCCceEEcCCC--cccHHHHHHHHHHHHHHHHhcCCCcEEEEEEe--C-C--CeEE
Confidence 4456666 22 22234889999999 6665543 356677999999999999754 4688888873 2 2 3799
Q ss_pred EEeCCCCCCHHH-------HHHhhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 148 FIDDGGGMDPES-------LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 148 I~DnG~GM~~e~-------l~~~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
|.|||.||+.+. ++-+|. +..++|.+ ..+.|.+|+|++ +.-++...++|.++..
T Consensus 76 V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~s-vvNALS~~l~v~v~r~ 141 (226)
T 4emv_A 76 VQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSS-VVNALSSWLEVEITRD 141 (226)
T ss_dssp EEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHH-HHHHTEEEEEEEEEET
T ss_pred EEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccch-hhhhcccceEEEEEeC
Confidence 999999999987 666674 66666654 456799999997 4566888899999874
No 24
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=98.74 E-value=1.1e-08 Score=97.29 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHchhhhhhCCC--ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNG 183 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA--~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiG 183 (470)
.++..++.|||+||++|...+. ..|.|.+.. .++...|.|.|||+||+++.+.++|.++++.+.. ....+..|+|
T Consensus 137 ~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLG 214 (258)
T 2c2a_A 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLG 214 (258)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE--ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCT
T ss_pred HHHHHHHHHHHHHHHhcCcCCCCceeEEEEEec--CCCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchH
Confidence 4556699999999999964322 456666643 3466889999999999999999999988876554 2223447999
Q ss_pred ccc---cccccCCeEEEEeeeCC
Q 012137 184 FKT---STMRLGADVIVFSRATH 203 (470)
Q Consensus 184 lK~---As~~lg~~v~V~Sr~~~ 203 (470)
|.. ..-.+|+++.|.|...+
T Consensus 215 L~i~~~iv~~~gG~i~v~s~~~~ 237 (258)
T 2c2a_A 215 LAITKEIVELHGGRIWVESEVGK 237 (258)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTT
T ss_pred HHHHHHHHHHcCCEEEEEecCCC
Confidence 853 34668999999998643
No 25
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.66 E-value=6.8e-08 Score=84.06 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
..+..++.|||+||+.+. ...|.|.+.. .++...|.|.|||.||+++.+.++|..+++.+... +..|+||..
T Consensus 43 ~~l~~il~nLl~NAi~~~---~~~i~i~~~~--~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~---~g~GlGL~i 114 (152)
T 1id0_A 43 NDFVEVMGNVLDNACKYC---LEFVEISARQ--TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR---PGQGVGLAV 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHHC---SSEEEEEEEE--CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC---TTCCSCHHH
T ss_pred HHHHHHHHHHHHHHHHhC---cCeEEEEEEe--cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCCC---CCcccCHHH
Confidence 345569999999999994 3477777654 45678899999999999999999999888766442 347899863
Q ss_pred ---cccccCCeEEEEeeeC
Q 012137 187 ---STMRLGADVIVFSRAT 202 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~ 202 (470)
..-.+|.++.+.+...
T Consensus 115 ~~~~~~~~gG~i~~~~~~~ 133 (152)
T 1id0_A 115 AREITEQYEGKIVAGESML 133 (152)
T ss_dssp HHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHcCCEEEEEeCCC
Confidence 3456899999988763
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.64 E-value=5e-08 Score=103.41 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHchhhhhhCCC--ceEEEEEEEec-CCCCceEEEEeCCCCCCHHHHHHhhhcC-cccccC-CCCCCccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIM-KDNSPALVFIDDGGGMDPESLRKCMSLG-YSTKKA-NKTIGQYG 181 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA--~~V~I~i~~~~-~~~~~~i~I~DnG~GM~~e~l~~~~~~G-~S~K~~-~~~iG~fG 181 (470)
..+..+|.|||+||+||...+. ..|.|.+.... .++...|+|.|||.||+++++.++|..+ .++|.. ....|.+|
T Consensus 31 ~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~G 110 (471)
T 1mu5_A 31 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYG 110 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCce
Confidence 4567799999999999954321 17888876421 1246789999999999999999999865 555543 34568899
Q ss_pred cccccc---ccccCCe-EEEEeeeCCC
Q 012137 182 NGFKTS---TMRLGAD-VIVFSRATHE 204 (470)
Q Consensus 182 iGlK~A---s~~lg~~-v~V~Sr~~~~ 204 (470)
+||..+ +-.+|.+ +.|.|+..++
T Consensus 111 LGL~iv~~l~~~~gG~~i~v~S~~~~g 137 (471)
T 1mu5_A 111 LGVKAAVLYSQMHQDKPIEIETSPVNS 137 (471)
T ss_dssp TTHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred eeHHHHHHHHHHhCCCceeEEEecCCC
Confidence 999643 3456777 9999997543
No 27
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=98.62 E-value=3e-08 Score=90.11 Aligned_cols=92 Identities=22% Similarity=0.271 Sum_probs=68.8
Q ss_pred HHHHHHHHHHchhhhhh-----------CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHH-----------------
Q 012137 109 AFGAIAELLDNAVDEVQ-----------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL----------------- 160 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~-----------~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l----------------- 160 (470)
+..++.|||+||+++.. .....|.|.+.. .++...|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~--~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~ 125 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH--EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAAT 125 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE--ETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe--cCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcc
Confidence 44479999999999951 235678887764 346788999999999999987
Q ss_pred -------HHhhhcCcccccCCCCCCccccccccc---ccccCCeEEEEeeeC
Q 012137 161 -------RKCMSLGYSTKKANKTIGQYGNGFKTS---TMRLGADVIVFSRAT 202 (470)
Q Consensus 161 -------~~~~~~G~S~K~~~~~iG~fGiGlK~A---s~~lg~~v~V~Sr~~ 202 (470)
.++|.++++++......+..|+||..+ .-.+|.++.+.|...
T Consensus 126 ~~~~~~~~~if~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~ 177 (189)
T 1i58_A 126 LSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKD 177 (189)
T ss_dssp CCHHHHHGGGGSTTCSHHHHHHGGGTCCCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cchhhhHHHhcCCcccccccCCCCCCCccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 778888887765422223479998643 456899999998853
No 28
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=98.61 E-value=5.2e-08 Score=86.11 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
..+..++.|||+||+.+. ...|.|.+.. .++...|.|.|||.||+++++.++|..+++.+..... +..|+||..
T Consensus 46 ~~l~~il~nll~NAik~~---~~~I~i~~~~--~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~~-~g~GlGL~i 119 (161)
T 1bxd_A 46 LSIKRAVANMVVNAARYG---NGWIKVSSGT--EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTI-SGTGLGLAI 119 (161)
T ss_dssp HHHHHHHHHHHHHHHTTC---CSCEEEEEEE--ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCCC-CCCSCCCCT
T ss_pred HHHHHHHHHHHHHHHhhc---CCeEEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCCC-CCcccCHHH
Confidence 345669999999999994 5678887754 3467889999999999999999999988876654322 458999864
Q ss_pred c---ccccCCeEEEEeeeC
Q 012137 187 S---TMRLGADVIVFSRAT 202 (470)
Q Consensus 187 A---s~~lg~~v~V~Sr~~ 202 (470)
+ .-.+|.++.+.+...
T Consensus 120 ~~~~~~~~gG~i~~~~~~~ 138 (161)
T 1bxd_A 120 VQRIVDNHNGMLELGTSER 138 (161)
T ss_dssp THHHHHHHTSEEEEEEETT
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 3 456799999988753
No 29
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=98.60 E-value=8.2e-08 Score=98.81 Aligned_cols=94 Identities=17% Similarity=0.286 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHchhhhhhCCC------ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------
Q 012137 107 KWAFGAIAELLDNAVDEVQNGA------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA------- 173 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA------~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~------- 173 (470)
.++..+|.|||+||+.|...+. ..|.|.+.. .++...|.|.|+|+||+++++.++|.++++.+..
T Consensus 242 ~~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~ 319 (407)
T 2q8g_A 242 SHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL--GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSR 319 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE--CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe--CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccC
Confidence 3555699999999999975322 268887754 4567889999999999999999999988876653
Q ss_pred CCCCCcccccccc---cccccCCeEEEEeeeC
Q 012137 174 NKTIGQYGNGFKT---STMRLGADVIVFSRAT 202 (470)
Q Consensus 174 ~~~iG~fGiGlK~---As~~lg~~v~V~Sr~~ 202 (470)
....+.+|+||.. ..-.+|+++.|.|...
T Consensus 320 ~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g 351 (407)
T 2q8g_A 320 AVPLAGFGYGLPISRLYAQYFQGDLKLYSLEG 351 (407)
T ss_dssp CCCSSCTTCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCC
Confidence 2344678999864 3566899999999864
No 30
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=98.60 E-value=8e-08 Score=98.36 Aligned_cols=94 Identities=20% Similarity=0.319 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHchhhhhhCCC------ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC------C
Q 012137 107 KWAFGAIAELLDNAVDEVQNGA------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA------N 174 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA------~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~------~ 174 (470)
.++..++.|||+||+.|...+. ..|.|.+.. .++...|.|.|+|+||+++.+.++|.++++.+.. .
T Consensus 230 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~ 307 (394)
T 2btz_A 230 SHLYHMLFELFKNAMRATVESHESSLILPPIKVMVAL--GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGG 307 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE--CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe--CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCC
Confidence 3455599999999999985433 358887754 4567889999999999999999999988876653 2
Q ss_pred CCCCcccccccc---cccccCCeEEEEeeeC
Q 012137 175 KTIGQYGNGFKT---STMRLGADVIVFSRAT 202 (470)
Q Consensus 175 ~~iG~fGiGlK~---As~~lg~~v~V~Sr~~ 202 (470)
...+.+|+||.. ..-.+|+++.|.|...
T Consensus 308 ~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2btz_A 308 TPLAGFGYGLPISRLYAKYFQGDLQLFSMEG 338 (394)
T ss_dssp ------CCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 334568999864 3566899999999864
No 31
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.58 E-value=6.3e-08 Score=104.02 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHchhhhhhCCC--ceEEEEEEEec-CCCCceEEEEeCCCCCCHHHHHHhhhcC-cccccC-CCCCCccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIM-KDNSPALVFIDDGGGMDPESLRKCMSLG-YSTKKA-NKTIGQYG 181 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA--~~V~I~i~~~~-~~~~~~i~I~DnG~GM~~e~l~~~~~~G-~S~K~~-~~~iG~fG 181 (470)
..+..+|.|||+||+||...+. ..|.|.+.... .++...|+|.|||.||+++++.++|..+ +++|.. ....|.+|
T Consensus 30 ~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~G 109 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYG 109 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCcc
Confidence 4667799999999999954321 16778775421 1246789999999999999999999865 555543 35668899
Q ss_pred cccccc---ccccCCe-EEEEeeeCCC
Q 012137 182 NGFKTS---TMRLGAD-VIVFSRATHE 204 (470)
Q Consensus 182 iGlK~A---s~~lg~~-v~V~Sr~~~~ 204 (470)
+||..+ +-.+|.+ +.|.|+..++
T Consensus 110 LGLsiv~~l~~~~gG~~I~V~S~~~~g 136 (530)
T 2zbk_B 110 LGVKAAVLYSQMHQDKPIEIETSPVNS 136 (530)
T ss_dssp SHHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred chHHHHHHHHHHhCCCceEEEEecCCC
Confidence 999643 3456777 9999997543
No 32
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=98.57 E-value=1.2e-07 Score=82.72 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
..+..++.|||+||+++.. +..|.|.+.. .++...|.|.|||.||+++.+.++|.++++..... -+..|+||..
T Consensus 45 ~~l~~il~nLl~NA~~~~~--~~~I~i~~~~--~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~--~~g~GlGL~i 118 (150)
T 1ysr_A 45 AGLRLAVDNAIANAVKHGG--ATLVQLSAVS--SRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTAS--HSGSGLGLAL 118 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CSEEEEEEEE--ETTEEEEEEEESSSCCCGGGHHHHHTSCC-------------CCCHH
T ss_pred HHHHHHHHHHHHHHHhcCC--CcEEEEEEEe--cCCEEEEEEEECCCCCCHHHHHHHhcccccCCCCC--CCCCCcCHHH
Confidence 3455699999999999952 3477777654 34668899999999999999999999877543221 2347899864
Q ss_pred ---cccccCCeEEEEeeeC
Q 012137 187 ---STMRLGADVIVFSRAT 202 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~ 202 (470)
..-.+|.++.+.+...
T Consensus 119 ~~~~~~~~gG~i~~~~~~~ 137 (150)
T 1ysr_A 119 VAQQAQLHGGTASLENSPL 137 (150)
T ss_dssp HHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHcCCEEEEeecCC
Confidence 3466899999988764
No 33
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.57 E-value=4.1e-08 Score=101.06 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=74.7
Q ss_pred CcccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhC-CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhh
Q 012137 87 GSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (470)
Q Consensus 87 ~~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~-gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~ 164 (470)
+.+++++.-| +|+-+... .-|..++.||||||+||+.+ +++.|.|.+. .++ .|+|.|||.||+.+. +|
T Consensus 10 ~~lE~vrkRPgmYiGs~~~--~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~---~~g--~I~V~DnGrGIp~e~---v~ 79 (369)
T 3cwv_A 10 GIVENVRKRPGMYCGDVGE--YGLHHLVYFLLDVAYEEARRGECRDVVLEVG---GDG--SIALFCTSRTVTAEN---LV 79 (369)
T ss_dssp CHHHHHHHSTHHHHSCSSH--HHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC---TTS--CEEEEEEESSCCHHH---HH
T ss_pred cHhHHHHhCCceEEcCCCC--chHHHHHHHHHhhhHhHHhhCCCCEEEEEEe---CCC--EEEEEECCCCcCHhH---ee
Confidence 3577788888 66655433 67888999999999998764 5899999884 222 899999999999932 23
Q ss_pred hcCcccccCC----CCCCcccccccccccccCCeEEEEeeeC
Q 012137 165 SLGYSTKKAN----KTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 165 ~~G~S~K~~~----~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
.+..++|.+. ...+..| |++ +.-+++..++|.|+..
T Consensus 80 ~lhagsKf~~~~~~~~y~vsG-Gls-~vnalSs~l~v~t~r~ 119 (369)
T 3cwv_A 80 RVATGAGFLGRPPGDGWGWDS-MLV-VSLALSSRYQVDIWAD 119 (369)
T ss_dssp HHHTTTTGGGSSCCCSTTTTS-SHH-HHHHTEEEEEEEEEET
T ss_pred eeecCCCcCCCcccccccccC-HHH-HHHHhhceEEEEEEEC
Confidence 5555555542 3344446 764 4556778899999974
No 34
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=98.56 E-value=1e-07 Score=98.74 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHchhhhhhCC-------CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC------
Q 012137 107 KWAFGAIAELLDNAVDEVQNG-------ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA------ 173 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~g-------A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~------ 173 (470)
.++..++.|||+||+.|...+ ...|.|.+.. .++...|.|.|+|+||+++++.++|.++++.+..
T Consensus 252 ~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~ 329 (419)
T 1y8o_A 252 SHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL--GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPT 329 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE--CSSEEEEEEEECSCCCCHHHHGGGGCTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe--CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcccc
Confidence 345559999999999997532 2368887754 4467889999999999999999999988876643
Q ss_pred -CCCCCcccccccc---cccccCCeEEEEeeeC
Q 012137 174 -NKTIGQYGNGFKT---STMRLGADVIVFSRAT 202 (470)
Q Consensus 174 -~~~iG~fGiGlK~---As~~lg~~v~V~Sr~~ 202 (470)
....+.+|+||.. ..-.+|.++.|.|...
T Consensus 330 ~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g 362 (419)
T 1y8o_A 330 RAAPLAGFGYGLPISRLYARYFQGDLKLYSMEG 362 (419)
T ss_dssp ---CC--CTTHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCcCCeecCHHHHHHHHHHhCCEEEEEecCC
Confidence 2234568999864 3566899999999864
No 35
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=98.56 E-value=1.2e-07 Score=97.18 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHchhhhhhCCC------ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------
Q 012137 107 KWAFGAIAELLDNAVDEVQNGA------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA------- 173 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA------~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~------- 173 (470)
.++..++.|||+||+.|...+. ..|.|.+.. .++...|.|.|+|+||+++++.++|.++++.+..
T Consensus 229 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~ 306 (394)
T 2e0a_A 229 SHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL--GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSR 306 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE--CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe--CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCC
Confidence 3455699999999999975322 358887754 4567889999999999999999999988876643
Q ss_pred CCCCCcccccccc---cccccCCeEEEEeeeC
Q 012137 174 NKTIGQYGNGFKT---STMRLGADVIVFSRAT 202 (470)
Q Consensus 174 ~~~iG~fGiGlK~---As~~lg~~v~V~Sr~~ 202 (470)
....+.+|+||.. ..-.+|+++.|.|...
T Consensus 307 ~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2e0a_A 307 NAPLAGFGYGLPISRLYAKYFQGDLNLYSLSG 338 (394)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCcccCHHHHHHHHHHhCCEEEEEecCC
Confidence 2234668999864 3566899999999864
No 36
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=98.52 E-value=9.9e-08 Score=85.76 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-CCCCCcccccccc
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFKT 186 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK~ 186 (470)
.+..+|.|||+||+++... ...+.|.+.....++...|.|.|||.||+++.+.++|..+++.+.. ....+..|+||..
T Consensus 43 ~l~~il~nLl~NAi~~~~~-~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 121 (177)
T 3sl2_A 43 KITQVLDNIISNALKYSPE-GGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAI 121 (177)
T ss_dssp HHHHHHHHHHHHHHHTCCT-TCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHH
Confidence 3455999999999999632 2455565543345567889999999999999999999987765443 2233458999864
Q ss_pred c---ccccCCeEEEEeeeC
Q 012137 187 S---TMRLGADVIVFSRAT 202 (470)
Q Consensus 187 A---s~~lg~~v~V~Sr~~ 202 (470)
+ .-.+|.++.+.+...
T Consensus 122 v~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 122 AKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 3 456899999988764
No 37
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.51 E-value=6.2e-08 Score=100.37 Aligned_cols=107 Identities=25% Similarity=0.237 Sum_probs=76.7
Q ss_pred cccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhC-CCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHH---
Q 012137 88 SLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK--- 162 (470)
Q Consensus 88 ~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~-gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~--- 162 (470)
.+++++..| .|+-+... .-+..+|.|||+||+|+... .++.|.|.+.. + ..|+|.|||+||+++++.+
T Consensus 13 ~le~vr~rpgmyiGs~~~--~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---~--~~i~V~DnG~GIp~~~~~~~~~ 85 (390)
T 1kij_A 13 GLEGVRHRPAMYIGGTGV--EGYHHLFKEILDNAVDEALAGYATEILVRLNE---D--GSLTVEDNGRGIPVDLMPEEGK 85 (390)
T ss_dssp TTHHHHHCTHHHHSCSSH--HHHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---T--SCEEEEECSSCCCCSEETTTTE
T ss_pred hhHHHhcCCCcEEccCCc--chHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---C--CEEEEEEcCCCCCHHHhhhccc
Confidence 788888888 56644332 45566888888888888643 36788888742 2 3899999999999998765
Q ss_pred -----hhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 163 -----CMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 163 -----~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
+|. +...+|.+ ..+.|.+|+||+. ...++..++|.|+..
T Consensus 86 ~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~-v~als~~~~v~t~~~ 134 (390)
T 1kij_A 86 PAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASV-VNALSEWTVVEVFRE 134 (390)
T ss_dssp EHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHH-HHHTEEEEEEEEEET
T ss_pred cchhhheeeeeecccccCccccccCCCCCcceee-ecccccceEEEEecC
Confidence 675 44444432 3356889999974 455778899999864
No 38
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=98.51 E-value=1.1e-07 Score=97.00 Aligned_cols=94 Identities=23% Similarity=0.287 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHchhhhhhCCC-------ceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCC-----
Q 012137 107 KWAFGAIAELLDNAVDEVQNGA-------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN----- 174 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA-------~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~----- 174 (470)
..+..++.|||+||++|...+. ..|.|.+.. .++...|.|.|+|+||+++.+.++|.++++.+...
T Consensus 237 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~ 314 (388)
T 1gkz_A 237 MPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN--NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPR 314 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE--CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe--CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccc
Confidence 3455699999999999975332 268887754 45678899999999999999999999888776532
Q ss_pred ----------------CCCCcccccccc---cccccCCeEEEEeeeC
Q 012137 175 ----------------KTIGQYGNGFKT---STMRLGADVIVFSRAT 202 (470)
Q Consensus 175 ----------------~~iG~fGiGlK~---As~~lg~~v~V~Sr~~ 202 (470)
...+.+|+||.. ..-.+|+++.|.|...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g 361 (388)
T 1gkz_A 315 ISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQG 361 (388)
T ss_dssp -----------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 223568999864 3566899999999864
No 39
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=98.48 E-value=1.4e-07 Score=82.27 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCC----------CceEEEEeCCCCCCHHHHHHhhhcCcccccCCCC
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDN----------SPALVFIDDGGGMDPESLRKCMSLGYSTKKANKT 176 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~----------~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~ 176 (470)
..+..++.|||+||+.+.......|.|.+... ++ ...|.|.|||.||+++.+.++|..+++++..
T Consensus 47 ~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~--~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~~--- 121 (160)
T 1r62_A 47 DQIEQVLLNIVRNALQALGPEGGEIILRTRTA--FQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREG--- 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEE--EEEEETTEEEEEEEEEEEEEECTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHhhccCCeEEEEEecc--ccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCCC---
Confidence 34556999999999999743256777776542 23 5789999999999999999999988876542
Q ss_pred CCccccccccc---ccccCCeEEEEeee
Q 012137 177 IGQYGNGFKTS---TMRLGADVIVFSRA 201 (470)
Q Consensus 177 iG~fGiGlK~A---s~~lg~~v~V~Sr~ 201 (470)
..|+||..+ .-.+|.++.+.|..
T Consensus 122 --g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 122 --GTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp ----CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred --CCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 379998643 45689999998875
No 40
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=98.48 E-value=2.3e-07 Score=94.98 Aligned_cols=93 Identities=22% Similarity=0.257 Sum_probs=65.0
Q ss_pred HHHHHHHHHHchhhhhh-----------CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHH-----------------
Q 012137 109 AFGAIAELLDNAVDEVQ-----------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL----------------- 160 (470)
Q Consensus 109 ~f~AIaELIDNAiDA~~-----------~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l----------------- 160 (470)
+..++.|||.||+++.. .....|.|.+.. .++...|+|.|||.||+++.+
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~--~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~ 184 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH--EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAAT 184 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE--ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE--eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhc
Confidence 34479999999999951 134577777754 456789999999999999987
Q ss_pred -------HHhhhcCcccccCCCCCCccccccc---ccccccCCeEEEEeeeCC
Q 012137 161 -------RKCMSLGYSTKKANKTIGQYGNGFK---TSTMRLGADVIVFSRATH 203 (470)
Q Consensus 161 -------~~~~~~G~S~K~~~~~iG~fGiGlK---~As~~lg~~v~V~Sr~~~ 203 (470)
..+|.+|++++......+..|+||. ...-.+|.++.|.|....
T Consensus 185 ~~~~~~~~~iF~p~fst~~~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~ 237 (379)
T 1b3q_A 185 LSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSMGIESEKDK 237 (379)
T ss_dssp SCTHHHHSGGGSTTCC-----------CCCSHHHHHHHHHTTCEEEEEEETTT
T ss_pred CCHHHHHHHhcCCCCccCCccCCCCCccccHHHHHHHHHHCCCEEEEEEcCCC
Confidence 6789999998876555566899985 345678999999998743
No 41
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.48 E-value=1.2e-07 Score=98.60 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHchhhhhh--CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHH--------HHHhhh-cCcccccC-
Q 012137 106 HKWAFGAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPES--------LRKCMS-LGYSTKKA- 173 (470)
Q Consensus 106 H~w~f~AIaELIDNAiDA~~--~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~--------l~~~~~-~G~S~K~~- 173 (470)
..-+..++.||||||+|+.. .-++.|.|.+.. + ...|+|.|||.||+.+. ++-+|. +..++|.+
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~--~--~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~ 125 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDP--E--NNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD 125 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--T--TTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCG
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC--C--CCEEEEEECCCcccCccccccCccchhheeeeecccCCCCC
Confidence 35677899999999999962 237888888852 1 25899999999999986 555676 66666654
Q ss_pred ---CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 174 ---NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 174 ---~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
.-+.|.+|+|++ +.-++...++|.++..
T Consensus 126 ~~ykvSgGlhGvGls-vVnAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 126 DEKKVTGGRNGYGAK-LCNIFSTKFTVETASR 156 (400)
T ss_dssp GGCCCCSCCSSCHHH-HHHHTEEEEEEEEEET
T ss_pred CcccccCCcccccee-eeEEeccceEEEEecC
Confidence 357799999986 4556888899998874
No 42
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=98.46 E-value=3.4e-07 Score=85.15 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
..+..++.|||+||+.+.. .+..|.|.+.. .++...|.|.|||.||+++.+.++|.++++++.. +..|+||..
T Consensus 122 ~~l~~il~nLl~NA~~~~~-~~~~i~i~~~~--~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~----~g~GlGL~i 194 (244)
T 3d36_A 122 EKFRQCLLNVMKNAIEAMP-NGGTLQVYVSI--DNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV----KGTGLGMMV 194 (244)
T ss_dssp HHHHHHHHHHHHHHHHTCT-TCEEEEEEEEE--ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG----GCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCeEEEEEEE--eCCEEEEEEEecCCCCCHHHHHHHhcccccCCCC----CCcchhHHH
Confidence 4566799999999999953 24677777754 3467889999999999999999999988876632 237899864
Q ss_pred ---cccccCCeEEEEeeeC
Q 012137 187 ---STMRLGADVIVFSRAT 202 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~ 202 (470)
..-.+|.++.+.+...
T Consensus 195 ~~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 195 VYRIIESMNGTIRIESEIH 213 (244)
T ss_dssp HHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 3456899999998864
No 43
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.45 E-value=1.4e-07 Score=98.21 Aligned_cols=104 Identities=23% Similarity=0.279 Sum_probs=68.0
Q ss_pred cccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhC-CCceEEEEEEEecCCCCceEEEEeCCCCCCHHH------
Q 012137 88 SLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPES------ 159 (470)
Q Consensus 88 ~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~-gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~------ 159 (470)
.+++++.-| +|+-+... ..++.|+||||+|++.+ .++.|.|.+. . + ..|+|.|||.|||.+.
T Consensus 34 glE~VRkRPgMYiGst~~-----~hlv~EivdNsiDea~ag~~~~I~V~i~--~-d--gsI~V~DnGrGIPv~~h~~~~~ 103 (408)
T 3lnu_A 34 GLDPVKRRPGMYTDTARP-----NHLAQEVIDNSVDEALAGHAKQIEVTLY--K-D--GSCEVSDDGRGMPVDIHPEEKI 103 (408)
T ss_dssp CCHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTSCCEEEEEEC--T-T--SCEEEEECSSCCCCSBCTTTCS
T ss_pred ccHHHhcCCccEECCCCc-----chhhHHHHHHHHHHhhcCCCceEEEEEe--C-C--CeEEEEEcCCCCCcccccccCC
Confidence 889999999 77755332 45899999999999764 4788888873 2 2 3799999999999976
Q ss_pred --HHHhhh-cCcccccC----CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 160 --LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 160 --l~~~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
++-+|. +...+|.+ ..+.|.+|+|++ +.-++...++|.++..
T Consensus 104 ~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~s-vVNALS~~l~v~v~rd 152 (408)
T 3lnu_A 104 PGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS-VVNALSTKVELFIKRE 152 (408)
T ss_dssp BHHHHHHHCC--------------------CHH-HHHHTEEEEEEEEEET
T ss_pred cchheEEEecccCCCcCCCceeecCCccccccc-eehhccCeEEEEEEEC
Confidence 344563 55555544 456799999986 5566888999999874
No 44
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=98.43 E-value=5e-07 Score=78.17 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
..+..++.|||+||+.+... ...|.|.+.. .++...|.|.|||.||+++.+.++|..+++++.. ..|+||..
T Consensus 46 ~~l~~il~nll~NAi~~~~~-~~~I~i~~~~--~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~-----g~GlGL~i 117 (152)
T 3a0y_A 46 TRIKQVLINLVQNAIEATGE-NGKIKITSED--MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ-----GTGLGLSI 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCEEEEEEEE--CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC-------CCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCEEEEEEEe--cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCCC-----CCCcCHHH
Confidence 34556999999999999632 4577777654 4567889999999999999999999988876532 37999864
Q ss_pred c---cc-ccCCeEEEEeee
Q 012137 187 S---TM-RLGADVIVFSRA 201 (470)
Q Consensus 187 A---s~-~lg~~v~V~Sr~ 201 (470)
+ .- .+|..+.+.+..
T Consensus 118 ~~~~~~~~~gg~~~~~~~~ 136 (152)
T 3a0y_A 118 CRKIIEDEHGGKIWTENRE 136 (152)
T ss_dssp HHHHHHTTTSCEEEEEEET
T ss_pred HHHHHHHhCCcEEEEecCC
Confidence 3 33 689999988764
No 45
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=98.41 E-value=4.9e-07 Score=85.80 Aligned_cols=88 Identities=16% Similarity=0.082 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
.++..++.|||+||+++... ...|.|.+.. .++...|.|.|||.||+++.+.++|..+++++.. ..|+||..
T Consensus 154 ~~l~~il~nLl~NA~~~~~~-~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~-----g~GlGL~i 225 (268)
T 4ew8_A 154 KRLAQTLDHLVENALRQTPP-GGRVTLSARR--ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDRG-----GPGLGLAL 225 (268)
T ss_dssp HHHHHHHHHHHHHHHHHSCT-TCEEEEEEEE--CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSSC-----CCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCEEEEEEEe--cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCCC-----CCcccHHH
Confidence 34566999999999999532 2577777754 4567899999999999999999999988866543 36899863
Q ss_pred ---cccccCCeEEEEeeeC
Q 012137 187 ---STMRLGADVIVFSRAT 202 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~ 202 (470)
..-.+|+++.+.|...
T Consensus 226 ~~~~~~~~gG~i~i~s~~~ 244 (268)
T 4ew8_A 226 VKALVELHGGWVALESEPG 244 (268)
T ss_dssp HHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 3467899999988864
No 46
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=98.41 E-value=1.4e-07 Score=86.44 Aligned_cols=89 Identities=22% Similarity=0.199 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc-
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT- 186 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~- 186 (470)
.+..++.|||+||+++... ...|.|.+.. ..|.|.|||.||+++.+.++|..+++.+.. .-+..|+||..
T Consensus 117 ~l~~il~nLl~NAi~~~~~-~~~i~i~~~~------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~ 187 (222)
T 3jz3_A 117 LLSLLVRNLLDNAVRYSPQ-GSVVDVTLNA------DNFIVRDNGPGVTPEALARIGERFYRPPGQ--TATGSGLGLSIV 187 (222)
T ss_dssp HHHHHHHHHHHHHHHTCCT-TCEEEEEECS------SEEEEECSCC----------------------------CTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-CCeEEEEEcc------CeEEEEECCCCCCHHHHHHHHhhhccCCCC--CCCcccccHHHH
Confidence 4556999999999999532 3456666531 129999999999999999999988775432 12347999864
Q ss_pred --cccccCCeEEEEeeeCCCC
Q 012137 187 --STMRLGADVIVFSRATHES 205 (470)
Q Consensus 187 --As~~lg~~v~V~Sr~~~~~ 205 (470)
..-.+|.++.+.|...++.
T Consensus 188 ~~i~~~~gG~i~i~s~~~~Gt 208 (222)
T 3jz3_A 188 QRIAKLHGMNVEFGNAEQGGF 208 (222)
T ss_dssp HHHHHHTTCEEECCBCTTSSB
T ss_pred HHHHHHcCCEEEEEcCCCCcE
Confidence 3466899999998875543
No 47
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.36 E-value=3e-07 Score=100.37 Aligned_cols=96 Identities=18% Similarity=0.283 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHchhhhhhCC--CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcC-cccccC--CCCCCccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLG-YSTKKA--NKTIGQYG 181 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~g--A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G-~S~K~~--~~~iG~fG 181 (470)
..+..+|.|||+||+||...+ ...|.|.+... ..+...|+|.|||.||+++++.++|..+ .+++.. ..+.|.+|
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~G 114 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERT-GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQG 114 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCce
Confidence 456679999999999996421 22788877542 1144689999999999999999999754 344432 34568899
Q ss_pred cccccc---ccccCCe-EEEEeeeCC
Q 012137 182 NGFKTS---TMRLGAD-VIVFSRATH 203 (470)
Q Consensus 182 iGlK~A---s~~lg~~-v~V~Sr~~~ 203 (470)
+||..+ +-.++.. +.|.|+..+
T Consensus 115 lGLsiv~~ls~~~gG~~I~V~S~~~g 140 (621)
T 2q2e_B 115 IGISAAVLYAQMTAGRHTKILSKTSP 140 (621)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEECSS
T ss_pred echhhhhHHHHHhCCCceeEEeeccC
Confidence 999743 2334455 789988754
No 48
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=98.28 E-value=1.3e-06 Score=76.21 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHchhhhhhCC--CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 108 WAFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~g--A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
.+..++.|||+||+.+.... ...|.|.+.. .++...|.|.|||.||+ .+.++|..+++.+.. .+..|+||.
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~--~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~---~~~~GlGL~ 111 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVII--EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE---LERSGMGFT 111 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE--ETTEEEEEEEECSSCCS--CHHHHTCCC----------CCCSCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE--eCCEEEEEEEECCCCcC--hHHHhhcccccCCCC---CCCCcchHH
Confidence 34559999999999985321 3678887764 34678899999999999 788899888776652 123689987
Q ss_pred ccccccCCeEEEEeeeC
Q 012137 186 TSTMRLGADVIVFSRAT 202 (470)
Q Consensus 186 ~As~~lg~~v~V~Sr~~ 202 (470)
.+. ++..++.+.+...
T Consensus 112 iv~-~~~~~i~~~~~~~ 127 (145)
T 1th8_A 112 IME-NFMDEVIVESEVN 127 (145)
T ss_dssp HHH-HHSSEEEEEEETT
T ss_pred HHH-HHHheEEEEeCCC
Confidence 543 3445888877753
No 49
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=98.13 E-value=2.2e-06 Score=73.29 Aligned_cols=74 Identities=16% Similarity=0.072 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
..+..++.||++||+.+. +++.|.|.+.. .++...|.|.|||.||+++.+ +..|+||..
T Consensus 39 ~~l~~il~nll~Na~k~~--~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~ 97 (128)
T 3ehg_A 39 NILSMCLKEAVTNVVKHS--QAKTCRVDIQQ--LWKEVVITVSDDGTFKGEENS-----------------FSKGHGLLG 97 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCSEEEEEEEE--ETTEEEEEEEESSCCCSCSSC-----------------CCTTSHHHH
T ss_pred HHHHHHHHHHHHHHHhcC--CCcEEEEEEEE--eCCEEEEEEEECCcCcCcccC-----------------CCCCccHHH
Confidence 345569999999999995 45788888764 346788999999999998764 225888853
Q ss_pred ---cccccCCeEEEEeee
Q 012137 187 ---STMRLGADVIVFSRA 201 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~ 201 (470)
..-.+|.++.+.|..
T Consensus 98 ~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 98 MRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHcCCEEEEEeCC
Confidence 245689999998876
No 50
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.13 E-value=1.1e-06 Score=86.15 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
..+..++.|||+||+++.. .+..|.|.+.. .++...|.|.|||+||+++.+.++|.+++++|.. ..|+||..
T Consensus 243 ~~l~~vl~nLl~NA~k~~~-~~~~i~i~~~~--~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~-----g~GlGL~i 314 (349)
T 3a0r_A 243 TRIKQVLINLVQNAIEATG-ENGKIKITSED--MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ-----GTGLGLSI 314 (349)
T ss_dssp HHHHHHHHHHHTHHHHTTC-TTCCEEEEEEE--ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-----------CCCTH
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCEEEEEEEe--cCCEEEEEEEECCCCCChHHHhhcCCCCccCCCC-----CccchHHH
Confidence 4567799999999999953 24577777754 3467889999999999999999999998887643 36888864
Q ss_pred c---cc-ccCCeEEEEeee
Q 012137 187 S---TM-RLGADVIVFSRA 201 (470)
Q Consensus 187 A---s~-~lg~~v~V~Sr~ 201 (470)
+ .- .+|..+.+.|..
T Consensus 315 ~~~~v~~~~gg~i~~~~~~ 333 (349)
T 3a0r_A 315 CRKIIEDEHGGKIWTENRE 333 (349)
T ss_dssp HHHHHHHTTCSBCCEEECS
T ss_pred HHHHHHHhCCCEEEEEeCC
Confidence 3 33 689999998874
No 51
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=98.04 E-value=5.9e-06 Score=75.96 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc-
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT- 186 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~- 186 (470)
.+..++.||++||+.+. +++.|.|.+.. .++...|.|.|||+||+++.+ +..|+||..
T Consensus 130 ~l~~il~nll~Na~k~~--~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~ 188 (218)
T 3ehh_A 130 ILSMCLKEAVTNVVKHS--QAKTCRVDIQQ--LWKEVVITVSDDGTFKGEENS-----------------FSKGHGLLGM 188 (218)
T ss_dssp HHHHHHHHHHHHHHHHT--CCSEEEEEEEE--ETTEEEEEEEESSCCCC-------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEEEEE--eCCEEEEEEEECCcCCCCCCC-----------------CCCCCCHHHH
Confidence 34568999999999995 45678888764 346789999999999999876 225888853
Q ss_pred --cccccCCeEEEEeee
Q 012137 187 --STMRLGADVIVFSRA 201 (470)
Q Consensus 187 --As~~lg~~v~V~Sr~ 201 (470)
..-.+|+++.+.|..
T Consensus 189 ~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 189 RERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHTTCEEEEECSS
T ss_pred HHHHHHcCCEEEEeCCC
Confidence 346789999998876
No 52
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.01 E-value=6.7e-06 Score=85.91 Aligned_cols=90 Identities=21% Similarity=0.192 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHchhhhhh--CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHH--------HHhhh-cCcccccC--
Q 012137 107 KWAFGAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL--------RKCMS-LGYSTKKA-- 173 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~--~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l--------~~~~~-~G~S~K~~-- 173 (470)
.-+..++.|+||||+|+.. ..++.|.|.+.. +...|+|.|||.|||.+.. +-+|. +....|.+
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~----d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~ 138 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD 138 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTT
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC----CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCC
Confidence 3456699999999999973 336888888852 2257999999999998753 23454 44555543
Q ss_pred --CCCCCcccccccccccccCCeEEEEeee
Q 012137 174 --NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (470)
Q Consensus 174 --~~~iG~fGiGlK~As~~lg~~v~V~Sr~ 201 (470)
..+-|.+|+|.+ +.-+|...+.|.++.
T Consensus 139 ~ykvSGGLhGVG~S-vVNALS~~l~V~v~r 167 (418)
T 1pvg_A 139 EKKVTGGRNGYGAK-LCNIFSTEFILETAD 167 (418)
T ss_dssp SCCCCSCCSSCHHH-HHHHTEEEEEEEEEE
T ss_pred ceeccCCccceeee-eeeeccceEEEEEEE
Confidence 456699999986 566788899999986
No 53
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.94 E-value=1e-05 Score=68.48 Aligned_cols=71 Identities=24% Similarity=0.311 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
.++..++.|||+||+++. .+..|.|.+.. .++ ..|.|.|||.||+++. .|+||..
T Consensus 42 ~~l~~il~nll~NA~k~~--~~~~i~i~~~~--~~~-~~i~v~D~G~gi~~~~--------------------~GlGL~i 96 (129)
T 3zxo_A 42 DQAEAVVREAVSNAVRHA--AASTLTVRVKV--DDD-LCIEVTDNGRGMPDEF--------------------TGSGLTN 96 (129)
T ss_dssp HHHHHHHHHHHHHCCCCS--SCCEEEEEEEE--SSE-EEEEEEECCCCCTTTT--------------------CSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCceEEEEEEE--cCC-EEEEEecCCCCCCccc--------------------CCcCHHH
Confidence 456679999999999995 45788888765 345 8899999999999765 3888853
Q ss_pred ---cccccCCeEEEEeeeC
Q 012137 187 ---STMRLGADVIVFSRAT 202 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~ 202 (470)
..-.+|.++.+.+...
T Consensus 97 ~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 97 LRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHcCCEEEEeeCCC
Confidence 3456899999988864
No 54
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.93 E-value=1.3e-05 Score=67.34 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCcccccccc
Q 012137 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (470)
Q Consensus 107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK~ 186 (470)
..+..++.||++||+.+. ++..|.|.+... ++ ..|.|.|||.||+++. .|+||..
T Consensus 38 ~~l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~-~~i~v~D~G~gi~~~~--------------------~GlGL~~ 92 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRHA--NATSLAINVSVE--DD-VRVEVVDDGVGISGDI--------------------TESGLRN 92 (124)
T ss_dssp HHHHHHHHHHHHHHHTCT--TCCEEEEEEEEE--EE-EEEEEEECCCSSCGGG--------------------SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCEEEEEEEeC--CC-EEEEEEECCCCCCccc--------------------cccCHHH
Confidence 345669999999999985 456788887653 34 8899999999999876 2888763
Q ss_pred ---cccccCCeEEEEeeeC
Q 012137 187 ---STMRLGADVIVFSRAT 202 (470)
Q Consensus 187 ---As~~lg~~v~V~Sr~~ 202 (470)
..-.+|.++.+.+...
T Consensus 93 ~~~~~~~~gG~i~~~~~~~ 111 (124)
T 3zxq_A 93 LRQRADDAGGEFTVENMPT 111 (124)
T ss_dssp HHHHHHHHTCEEEEEECTT
T ss_pred HHHHHHHhCCEEEEEEcCC
Confidence 3456899999988764
No 55
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=97.92 E-value=1.3e-05 Score=76.78 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCC--CCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGG--MDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~G--M~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
+...++.||++||++|...+ ..|.|.+.. .++...|.|.|+|.| |+++.+.+.|+.+++++.. ..|+||.
T Consensus 146 ~~~qvl~NLl~NA~~a~~~g-g~I~v~~~~--~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~~-----G~GLGLa 217 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAG-GVATVKGVA--ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGLG-----GPWVQAA 217 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTC-CEEEEEEEE--ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSCH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC-CeEEEEEEE--ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCCC-----CccHHHH
Confidence 45579999999999997543 467777754 457788999999988 6677778888876665432 3688885
Q ss_pred c---cccccCCeEEEEeee
Q 012137 186 T---STMRLGADVIVFSRA 201 (470)
Q Consensus 186 ~---As~~lg~~v~V~Sr~ 201 (470)
. ..-.+|.++.|.|..
T Consensus 218 i~~~iv~~hGG~i~v~s~~ 236 (247)
T 4fpp_A 218 YLNALVRAAGGQIAVEIGE 236 (247)
T ss_dssp HHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEEcC
Confidence 3 467789999998764
No 56
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.86 E-value=8e-06 Score=77.13 Aligned_cols=96 Identities=21% Similarity=0.306 Sum_probs=65.0
Q ss_pred cccccccCc-ccccccccchhhHHHHHHHHHHchhhhhhCC-CceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhh
Q 012137 88 SLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS 165 (470)
Q Consensus 88 ~~~~l~~~p-~fL~s~~tsH~w~f~AIaELIDNAiDA~~~g-A~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~ 165 (470)
.+++++.-| +|+-+.. ..-|..++.||||||+|+..++ ++.|.|.+.. . ..|+|.|||.||+.+.
T Consensus 12 ~le~vr~RPgmYiGs~~--~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~--~---g~i~V~DnG~Gip~~~------ 78 (198)
T 3ttz_A 12 GLEAVRKRPGMYIGSTS--ERGLHHLVWEIVDNSIDEALAGYANQIEVVIEK--D---NWIKVTDNGRGIPVDI------ 78 (198)
T ss_dssp HHHHHHHSHHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG--G---GEEEEEECSSCCCCSB------
T ss_pred chHHHhcCCCcEECCCC--CcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeC--C---CeEEEEECCCCccccc------
Confidence 567777777 6665433 3667789999999999987656 8999998852 2 2899999999999862
Q ss_pred cCcccccC-CCCCCcccccccccccccCCeEEEEeeeC
Q 012137 166 LGYSTKKA-NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (470)
Q Consensus 166 ~G~S~K~~-~~~iG~fGiGlK~As~~lg~~v~V~Sr~~ 202 (470)
..++|.. ...+ |+ -++.-++...++|.++..
T Consensus 79 -h~~~~~~~~e~i--~t---~SvVNALS~~l~v~v~r~ 110 (198)
T 3ttz_A 79 -QEKMGRPAVEVI--LT---SSVVNALSQDLEVYVHRN 110 (198)
T ss_dssp -CTTTSSBHHHHH--HH---TCHHHHTEEEEEEEEEET
T ss_pred -cCcCCCcccccc--ce---eEehhhhcCeEEEEEEEC
Confidence 1111111 0010 22 234556778899999874
No 57
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.75 E-value=7.4e-06 Score=76.96 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=58.5
Q ss_pred CCCCCchhhhhhhccccCcccccccCCCcCcccccccCcccccccccchhhHHHHHHHHHHchhhhhhC-----CCceEE
Q 012137 58 PVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN-----GATFVK 132 (470)
Q Consensus 58 ~~~~~~~~~~~~kA~~~~~~~~~~~~~~~~~~~~l~~~p~fL~s~~tsH~w~f~AIaELIDNAiDA~~~-----gA~~V~ 132 (470)
|...+++++|+|+|++.++... ..+ ..+.+... +. .+.+|++||++|..+ ..+.|.
T Consensus 74 P~la~lLl~K~~~a~e~~i~le--v~~---~~s~l~~~-------~~-------~lgnLi~na~~Ai~~~~~~~~~~~I~ 134 (192)
T 1ixm_A 74 PHLAFDFLTFNWKTHYMTLEYE--VLG---EIKDLSAY-------DQ-------KLAKLMRKLFHLFDQAVSRESENHLT 134 (192)
T ss_dssp HHHHHHHHHGGGSCCSSEEEEE--EES---SCCCCTTT-------HH-------HHHHHHHHHHHHHHHHBCTTSCCEEE
T ss_pred HHHHHHHHHHHHHhccCCeEEE--Eec---CccccCCC-------cH-------HHHHHHHHHHHHHHhhhccCCCCeEE
Confidence 4445899999999999888441 012 11222222 22 468899999988732 346788
Q ss_pred EEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcc
Q 012137 133 VDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYS 169 (470)
Q Consensus 133 I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S 169 (470)
|.+.....++...|.|.|+|++++++.+.++|+-|++
T Consensus 135 i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 135 VSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp EEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred EEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 8876421146799999999999999999999976653
No 58
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00028 Score=82.09 Aligned_cols=108 Identities=23% Similarity=0.244 Sum_probs=72.9
Q ss_pred cccccccCc-ccccccccc--h-------------------hhHHHHHHHHHHchhhhhhCC-C-ceEEEEEEEecCCCC
Q 012137 88 SLEHARVHP-KFLHSNATS--H-------------------KWAFGAIAELLDNAVDEVQNG-A-TFVKVDRVNIMKDNS 143 (470)
Q Consensus 88 ~~~~l~~~p-~fL~s~~ts--H-------------------~w~f~AIaELIDNAiDA~~~g-A-~~V~I~i~~~~~~~~ 143 (470)
.++|++.-| +|+-|..+. | .-+.-.+-|+||||+|...+| + +.|.|.+.. ..
T Consensus 17 ~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~----~d 92 (1177)
T 4gfh_A 17 QLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA----EE 92 (1177)
T ss_dssp HHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TT
T ss_pred cchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeEEEEEEC----CC
Confidence 677888877 676543321 1 246678899999999965433 3 678887742 24
Q ss_pred ceEEEEeCCCCCCHH--------HHHHhhh-cCcccccC----CCCCCcccccccccccccCCeEEEEee
Q 012137 144 PALVFIDDGGGMDPE--------SLRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSR 200 (470)
Q Consensus 144 ~~i~I~DnG~GM~~e--------~l~~~~~-~G~S~K~~----~~~iG~fGiGlK~As~~lg~~v~V~Sr 200 (470)
..|+|.|||.|||-+ .++-+|. +....|.+ ..+-|.+|+|.+ +.-+|...+.|.+.
T Consensus 93 ~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~s-vVNALS~~~~vev~ 161 (1177)
T 4gfh_A 93 HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAK-LCNIFSTEFILETA 161 (1177)
T ss_dssp TEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHH-HHHHTEEEEEEEEE
T ss_pred CEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhh-HHhhcCCceEEEEE
Confidence 579999999999964 2344555 44445544 445699999976 45557777777665
No 59
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=94.97 E-value=0.025 Score=57.95 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHchhhhhh--CCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccCCCCCCccccccc
Q 012137 108 WAFGAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (470)
Q Consensus 108 w~f~AIaELIDNAiDA~~--~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~~~~iG~fGiGlK 185 (470)
.+.-++.||+.||+.+.. .....|.|.+.... ++...|+|.|+|.|+++. +.. +..|.||.
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~-~~~l~i~V~D~G~g~~~~----------~~~------~~~G~GL~ 359 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALAG-DGNVRASVIDRGQWKDHR----------DGA------RGRGRGLA 359 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-TSEEEEEEEESCBC----------------------------CHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-CCEEEEEEEECCCCCCCC----------CCC------CCCCcHHH
Confidence 344589999999999952 11467888776422 357899999999999976 111 22478876
Q ss_pred ccccccCCeEEEEee
Q 012137 186 TSTMRLGADVIVFSR 200 (470)
Q Consensus 186 ~As~~lg~~v~V~Sr 200 (470)
.+ -+++.++.+.+.
T Consensus 360 lv-~~l~~~~~~~~~ 373 (399)
T 3ke6_A 360 MA-EALVSEARIMHG 373 (399)
T ss_dssp HH-HTTSSEEEEEEE
T ss_pred HH-HHHHHheeeEEC
Confidence 43 447778876544
No 60
>2d16_A Hypothetical protein PH1918; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=23.62 E-value=31 Score=31.06 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=15.6
Q ss_pred CCccceEEeeeeeee--cchh
Q 012137 434 SLKGNGVVGIHTLFV--GFFL 452 (470)
Q Consensus 434 ~~~g~GviGVle~f~--~~~~ 452 (470)
..+||||+||+|=|- |+|.
T Consensus 123 t~~GrgvlGVvDG~~p~GVE~ 143 (162)
T 2d16_A 123 TELGRAVIGVVDGKAANKIET 143 (162)
T ss_dssp CSSCEEEEEEEESSCCCSCCC
T ss_pred cCCCcEEEEEecCCCCCCccC
Confidence 469999999999865 7764
No 61
>1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown funct; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A*
Probab=23.34 E-value=29 Score=31.40 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=16.3
Q ss_pred cCCCccceEEeeeeeee--cchh
Q 012137 432 DGSLKGNGVVGIHTLFV--GFFL 452 (470)
Q Consensus 432 ~~~~~g~GviGVle~f~--~~~~ 452 (470)
+...+||||+||+|=|- |+|.
T Consensus 126 et~~~GrgvlGVvDG~~P~GVE~ 148 (167)
T 1wvq_A 126 EVEPERRGVVGVVDGHSPLGVET 148 (167)
T ss_dssp EEETTEEEEEEEEESCCCCEECC
T ss_pred eccCCCceEEEEecCCCCCCccC
Confidence 33459999999999865 7764
No 62
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=23.32 E-value=31 Score=31.02 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=15.6
Q ss_pred CCccceEEeeeeeee--cchh
Q 012137 434 SLKGNGVVGIHTLFV--GFFL 452 (470)
Q Consensus 434 ~~~g~GviGVle~f~--~~~~ 452 (470)
..+||||+||+|=|- |+|.
T Consensus 124 t~~GrgvlGVvDG~~p~GVE~ 144 (162)
T 2ekm_A 124 TDQGRGVIGVVDGYTPLGIET 144 (162)
T ss_dssp CSSCEEEEEEEESCCCCEECC
T ss_pred cCCCcEEEEEecCCCCCCccC
Confidence 469999999999865 7764
No 63
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=23.30 E-value=32 Score=31.14 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=15.4
Q ss_pred CCccceEEeeeeeee--cchh
Q 012137 434 SLKGNGVVGIHTLFV--GFFL 452 (470)
Q Consensus 434 ~~~g~GviGVle~f~--~~~~ 452 (470)
-.+||||+||+|-|- |+|.
T Consensus 135 t~qGRgvlGVvDG~~P~GVE~ 155 (173)
T 1rlh_A 135 GERGNGVLGVIDGYSPVGVES 155 (173)
T ss_dssp CSSSEEEEEEEESCCCCSCCC
T ss_pred cCCCcEEEEEecCCCCCCccC
Confidence 469999999999865 7663
No 64
>1vgg_A Conserved hypothetical protein TT1634; thermus thermophilus HB8, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.75A {Thermus thermophilus} SCOP: d.256.1.1
Probab=22.11 E-value=31 Score=30.97 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.5
Q ss_pred CCccceEEeeeeeee--cchh
Q 012137 434 SLKGNGVVGIHTLFV--GFFL 452 (470)
Q Consensus 434 ~~~g~GviGVle~f~--~~~~ 452 (470)
..+||||+||+|=|- |+|.
T Consensus 123 t~~GrgvlGVvDG~~p~GVE~ 143 (161)
T 1vgg_A 123 EGEQRAILGVMDGFTPLGVED 143 (161)
T ss_dssp ETTEEEEEEEEESCCCCEECC
T ss_pred cCCCcEEEEEecCCCCCCccC
Confidence 468999999999865 7764
No 65
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.91 E-value=48 Score=21.28 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=11.8
Q ss_pred HHHHHHHchhhhhh
Q 012137 112 AIAELLDNAVDEVQ 125 (470)
Q Consensus 112 AIaELIDNAiDA~~ 125 (470)
-|.||+||+|.-+.
T Consensus 13 qieelldncietfv 26 (31)
T 4h62_V 13 QIEELLDNCIETFV 26 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999998764
Done!