BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012138
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 277/396 (69%), Gaps = 6/396 (1%)
Query: 46 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE 105
EY+Y AHNYHP+P+ + KG +WD EG KY DFLS+YSAVNQGHCHPKI+ AL+ Q +
Sbjct: 47 EYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVD 106
Query: 106 KLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165
KLTL+SRAFYN+ + E +T +F Y VLPMNTG E ETA KLARKWGY K
Sbjct: 107 KLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKY 166
Query: 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225
+A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+ ++ +
Sbjct: 167 KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP--NV 224
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285
A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR LA D+E VR
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 284
Query: 286 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345
PD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL VAIA+L+V+ +E
Sbjct: 285 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEEN 344
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
LAE + LG LR L K+ + V VRG+GL NA+ +T A+ +CL++++
Sbjct: 345 LAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDN 400
Query: 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 401 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 277/396 (69%), Gaps = 6/396 (1%)
Query: 46 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE 105
EY+Y AHNYHP+P+ + KG +WD EG KY DFLS+YSAVNQGHCHPKI+ AL+ Q +
Sbjct: 10 EYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVD 69
Query: 106 KLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165
KLTL+SRAFYN+ + E +T +F Y VLPMNTG E ETA KLARKWGY K
Sbjct: 70 KLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKY 129
Query: 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225
+A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+ ++ +
Sbjct: 130 KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP--NV 187
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285
A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR LA D+E VR
Sbjct: 188 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 247
Query: 286 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345
PD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL VAIA+L+V+ +E
Sbjct: 248 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEEN 307
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
LAE + LG LR L K+ + V VRG+GL NA+ +T A+ +CL++++
Sbjct: 308 LAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDN 363
Query: 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 364 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 399
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/396 (52%), Positives = 276/396 (69%), Gaps = 6/396 (1%)
Query: 46 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE 105
EY+Y AHNYHP+P+ + KG +WD EG KY DFLS+ SAVNQGHCHPKI+ AL+ Q +
Sbjct: 47 EYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVD 106
Query: 106 KLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165
KLTL+SRAFYN+ + E +T +F Y VLPMNTG E ETA KLARKWGY K
Sbjct: 107 KLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKY 166
Query: 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225
+A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+ ++ +
Sbjct: 167 KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP--NV 224
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285
A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR LA D+E VR
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 284
Query: 286 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345
PD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL VAIA+L+V+ +E
Sbjct: 285 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEEN 344
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
LAE + LG LR L K+ + V VRG+GL NA+ +T A+ +CL++++
Sbjct: 345 LAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDN 400
Query: 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 401 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/396 (52%), Positives = 274/396 (69%), Gaps = 6/396 (1%)
Query: 46 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE 105
EY+Y AHN HP+P+ + KG +WD EG KY DFLS+ SAVNQGHCHPKI+ AL+ Q +
Sbjct: 47 EYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVD 106
Query: 106 KLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165
KLTL+SRAFYN+ + E +T +F Y VLPMNTG E ETA KLARKWGY K
Sbjct: 107 KLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKY 166
Query: 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225
+A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+ ++ +
Sbjct: 167 KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP--NV 224
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285
A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR LA D+E VR
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 284
Query: 286 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345
PD+V+LGKAL GG+ PVSAVL D ++ML I+PGEH ST+GGNPL VAIA+L+V+ +E
Sbjct: 285 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEEN 344
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
LAE + LG LR L K+ + V VRG+GL NA+ +T A+ +CL++++
Sbjct: 345 LAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDN 400
Query: 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 401 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/400 (49%), Positives = 276/400 (69%), Gaps = 11/400 (2%)
Query: 42 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQ 101
+I L Y A+NYHP+PIV S+A+G + DPEGN+Y+D LSAYSAVNQGH HPKI+ AL
Sbjct: 3 IIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALI 62
Query: 102 EQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKK 161
+QA ++TL+SRAF++D+ + E++ + +MVLPMNTGAE VETA+K AR+W Y KK
Sbjct: 63 DQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKK 122
Query: 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES 221
+ A I+ C FHGRT+ A+SMS + E RGFGP+LPG + + +GD+ AL+ +
Sbjct: 123 VEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPN 182
Query: 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 281
A F+ EPIQGEAG+ IPP G+LK ++C K N+L +ADEIQ+GL R+G++ A DW
Sbjct: 183 ---TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDW 239
Query: 282 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI 341
+ V PDM ILG ALGGGV P+S A+++++ +PG HGSTFGGNPLA AV+IA+L+V+
Sbjct: 240 DNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVL 299
Query: 342 RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK 401
+EKL ERS LGE+L L +I + EVRG+GLF +E ++ A P C +
Sbjct: 300 EEEKLTERSLQLGEKLVGQLKEIDNPM---ITEVRGKGLFIGIELNEPARPY-----CEQ 351
Query: 402 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
+K G+L K TH+ ++R+ PPL IS +L+ + + VL
Sbjct: 352 LKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/395 (49%), Positives = 266/395 (67%), Gaps = 5/395 (1%)
Query: 43 INLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQE 102
+N E Y AHNY P+P+V + KG ++D E +Y DFLSAYS+VNQGHCHP I+ A+
Sbjct: 14 MNNELTYGAHNYDPIPVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMIN 73
Query: 103 QAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKF 162
QA+KLT+ SRAF++D V LT++FGYD VL MNTGAE ETA KL RKWGY KK
Sbjct: 74 QAKKLTICSRAFFSDSLGVCERYLTNLFGYDKVLMMNTGAEASETAYKLCRKWGYEVKKI 133
Query: 163 SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222
+ A I+ C F GRTL +S S D + FGP +P LKV + D+ ALEK ++
Sbjct: 134 PENSAKIIVCNNNFSGRTLGCVSASTDKKCKNNFGPFVPNFLKVPYDDLEALEKELQDP- 192
Query: 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 282
+ F+ EP+QGEAGVI+P D Y V LC KYN+L +ADE+Q+GL R+G++L +
Sbjct: 193 -NVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHHY 251
Query: 283 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 342
V+PD+++LGKAL GG P+SA+LA+ +VML ++PGEHGST+GGNPLA+A+ + +L V+
Sbjct: 252 GVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPLAAAICVEALKVLI 311
Query: 343 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM 402
+EKL E + LG Q+L K Q + V+EVRG+GL A+EF V+ +DICLK
Sbjct: 312 NEKLCENADKLGAPFLQNL-KEQLKDSKVVREVRGKGLLCAIEFKNDL--VNVWDICLKF 368
Query: 403 KERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437
KE G++ + HD VRLTPPL I+ +L E ++ +
Sbjct: 369 KENGLITRSVHDKTVRLTPPLCITKEQLDECTEII 403
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 390 bits (1002), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/395 (48%), Positives = 266/395 (67%), Gaps = 5/395 (1%)
Query: 43 INLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQE 102
IN E +Y AHNY P+P+V +AKG ++D +Y DFLSAYS+VNQGHCHP I+ A+
Sbjct: 33 INNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMIN 92
Query: 103 QAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKF 162
QA+ LT+ SRAF++ + LT++ GYD VL MNTGAE ETA KL RKWGY KK
Sbjct: 93 QAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKI 152
Query: 163 SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222
+ A IV C F GRTL IS S + FGP P KV + D+ ALE+ K+
Sbjct: 153 PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDP- 211
Query: 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 282
+ F+ EPIQGEAGVI+P D YL+ V D+C KYN+L +ADE+Q+GL R+G++L
Sbjct: 212 -NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHY 270
Query: 283 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 342
V+PD+++LGKAL GG P+SAVLA+ ++ML I+PGEHGST+GGNPLA+++ + +L+V+
Sbjct: 271 NVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI 330
Query: 343 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM 402
+EKL E + LG ++L K + + V++VRG+GL A+EF K L V+ DICLK+
Sbjct: 331 NEKLCENAEKLGGPFLENL-KRELKDSKIVRDVRGKGLLCAIEF-KNEL-VNVLDICLKL 387
Query: 403 KERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437
KE G++ + HD +RLTPPL I+ +L E ++ +
Sbjct: 388 KENGLITRDVHDKTIRLTPPLCITKEQLDECTEII 422
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 210/394 (53%), Gaps = 21/394 (5%)
Query: 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108
Y +NY +P+ F + KG ++D EG +YLDF+S + GH +PK+ +AL+EQ EKL
Sbjct: 2 YLMNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLL 61
Query: 109 LSSRAFYNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167
S + N A +L F + V N+G E VE A+KLARK+ K K ++
Sbjct: 62 HVSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGK---NKW 118
Query: 168 IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227
+S FHGRT ++S + + +GF PL+PG DI ++ K+ E + AG
Sbjct: 119 KFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDE---ETAG 175
Query: 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD 287
+ E IQGE GV + +L ++++C + ++L+I DE+Q+G+ R+G A ++PD
Sbjct: 176 IIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPD 235
Query: 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347
++ L K LGGGV P+ A+LA +EV PG HGSTFGGNPLA +D + EKL
Sbjct: 236 VIALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV--EKLL 292
Query: 348 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI 407
+G ++ L ++ + +V+GRGL +E ++ D LK E+G+
Sbjct: 293 PHVREVGNYFKEKLKELGKG------KVKGRGLMLGLELER-----ECKDYVLKALEKGL 341
Query: 408 LAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
L T ++R PPL I + L ++L
Sbjct: 342 LINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 197/382 (51%), Gaps = 8/382 (2%)
Query: 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113
Y P + + KGS +WD +G +Y+DF + GHCHP +++AL+ Q E L +S
Sbjct: 36 YAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNV 95
Query: 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173
F N+ +L + VL MN+G E ETA KLAR + V+ S + I++
Sbjct: 96 FTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRH--SPFKTKIIAFH 153
Query: 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI 233
FHGR+L +S+ + GFGP + V F D+ A++ + D + EPI
Sbjct: 154 NAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMD---DHTCAVVVEPI 210
Query: 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGK 293
QGE GV +LK +RDLC ++ L++ DE+Q G+ R+G + A V PD++ K
Sbjct: 211 QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAK 270
Query: 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHL 353
ALGGG PVSA+L +E+ G HGST+GGNPLA AVA A+ D+I ++ +
Sbjct: 271 ALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTK 329
Query: 354 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 413
++ QHL I +QF + ++RG GL E K A D E G++
Sbjct: 330 RQQFVQHLQAIDEQF-DIFSDIRGMGLLIGAEL-KPKYKGRARDFLYAGAEAGVMVLNAG 387
Query: 414 DTIVRLTPPLSISSNELQEGSK 435
++R P L + ++ EG +
Sbjct: 388 ADVMRFAPSLVVEEADIHEGMQ 409
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 215/394 (54%), Gaps = 12/394 (3%)
Query: 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108
Y + Y P F KGS I+D +GN YLDF S + GH HP++++A+++QAEKL
Sbjct: 2 YLMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLI 61
Query: 109 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168
S F+N AE L+ V NTG E E A+K+ARK+G K +
Sbjct: 62 HCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYR--- 118
Query: 169 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228
I+S FHGRTL +++ + + + F PL+PG +F ++ L + K S D A F
Sbjct: 119 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRR--KMSEDVCAVF 176
Query: 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 288
L EPIQGE+G++ +L+ R LC +Y+ L++ DE+Q G+ R+G++ A V PD+
Sbjct: 177 L-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDV 235
Query: 289 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348
+ K LGGGV P+ AV+ ++ + ++PG+HG+TFGGNPLA + + + E E
Sbjct: 236 LTTAKGLGGGV-PIGAVIVNERANV-LEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLE 293
Query: 349 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 408
G L + L ++++++ + V +VRG GL ++F + VS ++ K E +L
Sbjct: 294 EVEEKGNYLMKKLQEMKEEY-DVVADVRGMGLMIGIQFRE---EVSNREVATKCFENKLL 349
Query: 409 AKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
P + +R PPL++ E+ + L VL+
Sbjct: 350 VVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 383
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 213/394 (54%), Gaps = 12/394 (3%)
Query: 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108
Y + Y P F KGS I+D +GN YLDF S + GH HP++++A+++QAEKL
Sbjct: 14 YLXNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLI 73
Query: 109 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168
S F+N AE L+ V NTG E E A+K+ARK+G K +
Sbjct: 74 HCSNLFWNRPQXELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYR--- 130
Query: 169 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228
I+S FHGRTL +++ + + + F PL+PG +F ++ L + K S D A F
Sbjct: 131 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRR--KXSEDVCAVF 188
Query: 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 288
L EPIQGE+G++ +L+ R LC +Y+ L++ DE+Q G R+G++ A V PD+
Sbjct: 189 L-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDV 247
Query: 289 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348
+ K LGGGV P+ AV+ ++ + ++PG+HG+TFGGNPLA + + + E E
Sbjct: 248 LTTAKGLGGGV-PIGAVIVNERANV-LEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLE 305
Query: 349 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 408
G L + L + ++++ + V +VRG GL ++F + VS ++ K E +L
Sbjct: 306 EVEEKGNYLXKKLQEXKEEY-DVVADVRGXGLXIGIQFREE---VSNREVATKCFENKLL 361
Query: 409 AKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
P + +R PPL++ E+ + L VL+
Sbjct: 362 VVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 192/380 (50%), Gaps = 8/380 (2%)
Query: 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113
Y P P + + +GS +WD +G +Y+DF + GH HP++ +AL EQA K +
Sbjct: 18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNG 77
Query: 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173
+ N+ A++L D V N+GAE E ALKLARK + ++ ++ IV+
Sbjct: 78 YTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARK--FAHDRYGSHKSGIVAFK 135
Query: 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI 233
FHGRTL +S + F PL + DI + + D + EPI
Sbjct: 136 NAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALID---DSTCAVIVEPI 192
Query: 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGK 293
QGE GV+ + +L+ +R+LC+++N L+I DE+Q+G+ R+G + A V PD++ K
Sbjct: 193 QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAK 252
Query: 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHL 353
ALGGG PV A+LA +E + G HG+T+GGNPLASAVA L++I ++
Sbjct: 253 ALGGG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQR 311
Query: 354 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 413
+ + L I ++ EVRG GL + A I + + G++
Sbjct: 312 HDWFVERLNTINHRY-GLFSEVRGLGLLIGCVLNAD-YAGQAKQISQEAAKAGVMVLIAG 369
Query: 414 DTIVRLTPPLSISSNELQEG 433
+VR P L++S E+ G
Sbjct: 370 GNVVRFAPALNVSEEEVTTG 389
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 132/392 (33%), Positives = 208/392 (53%), Gaps = 23/392 (5%)
Query: 52 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111
+N H + IV Q G+ +WD EGN+Y+D + Y N GH +P++++A++ QAE L
Sbjct: 24 YNKHDLLIVRGQ--GARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP 81
Query: 112 RAFYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 169
+ F LT++ ++ V P+N+G E E ALK AR +KKF
Sbjct: 82 QTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA-HTGRKKF------- 133
Query: 170 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL 229
V+ F GRT+ ++S++ + + F PL+ + + D+ AL++ E + A +
Sbjct: 134 VAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE---ETAAVI 190
Query: 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV 289
EP+QGE GV +L+A R++ + L+I DEIQ+G+ R+G+ A + + PD++
Sbjct: 191 LEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL 250
Query: 290 ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER 349
L KALGGGV P+ + +EV + G HG+TFGGNPLA A +A++ + +L ER
Sbjct: 251 TLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWER 309
Query: 350 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA 409
+A LG + L I ++EVRG GL +E + A P I KE +LA
Sbjct: 310 AAELGPWFMEKLRAIPSP---KIREVRGMGLMVGLELKEKAAPY----IARLEKEHRVLA 362
Query: 410 KPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
T++R PPL I +L+ +A+ VL
Sbjct: 363 LQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 201/400 (50%), Gaps = 13/400 (3%)
Query: 46 EYEYSAH---NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQE 102
+Y+ +H Y IV + +G ++D + KYLDF S G+ H K ++
Sbjct: 4 DYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKA 63
Query: 103 QAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKF 162
Q +KL +S +YN+ A+ L + V N+G E +E A K ARK+ + K
Sbjct: 64 QVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNK--- 120
Query: 163 SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222
+ ++ FHGRTL A+S++ + + + F PL+ G + DI+++EK+ E
Sbjct: 121 GVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNE-- 178
Query: 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 282
+ + E +QGE G+ + KA+R LC + +IL+IADEIQ G RSG+ A +
Sbjct: 179 -KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHA 237
Query: 283 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 342
++ PD+ KALG G+ + V+ K ++ G+HGST+GGNPL A A ++ +
Sbjct: 238 QILPDIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFK 297
Query: 343 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM 402
+EK+ E L L Q L ++ +F ++ K+ +G G + DK+ V + K
Sbjct: 298 EEKILENVNKLTPYLEQSLDELINEF-DFCKKRKGLGFXQGLSLDKS---VKVAKVIQKC 353
Query: 403 KERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+E +L + +R PPL + + E S+ L L+
Sbjct: 354 QENALLLISCGENDLRFLPPLILQKEHIDEXSEKLRKALK 393
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 207/418 (49%), Gaps = 57/418 (13%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLT-LSSRAFY 115
P+V +G I+D +GNKYLDF S N G HP+++K EQ +KL ++ FY
Sbjct: 25 PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFY 84
Query: 116 NDKFPVFAERLTSMFGYDM---VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
N A++L + + V N+G E +E ++K+ + G +K+ I++
Sbjct: 85 NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG---RKY------IIAF 135
Query: 173 CGCFHGRTLAAISMSCDNEAIRGF-GPLLPGHLKVDFGD-------ITALEK-------- 216
G FHGRT +IS++ R GP +PG + V + + I E
Sbjct: 136 LGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRV 195
Query: 217 -------IFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267
IF +++AG FEPIQGE G +IPP + ++ L KY IL++ DE+Q
Sbjct: 196 IEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQ 255
Query: 268 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 327
GL R+G++ A + PD++ L KALGGG++P+ A + K+ L +PG H +TFGGN
Sbjct: 256 MGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKD--LDFKPGMHSNTFGGN 313
Query: 328 PLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385
LA A+ +D+++D + E EEL+ +VRG GL +E
Sbjct: 314 ALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQ-----------GLADDVRGIGLAWGLE 362
Query: 386 FDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 443
+++ + K RG+L P + +R+ PPL IS E ++G L V+++
Sbjct: 363 YNEKKVRDRIIGESFK---RGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKV 417
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 204/416 (49%), Gaps = 41/416 (9%)
Query: 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-- 114
+P+ +A G + D +GN+ +D S + G+ PK+++A++ Q T +
Sbjct: 43 MPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTP 102
Query: 115 YNDKFPVFAE--RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
Y V + RLT + G N+G+E VE A+K+AR + + D A
Sbjct: 103 YEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHA----- 157
Query: 173 CGCFHGRTLAAISMSCDNEAIR-GFGPLLP----GHLKVDFGDIT--------------- 212
+HGRT ++++ + GFGP P L F D
Sbjct: 158 ---YHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKR 214
Query: 213 ALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271
A+ I K+ G D +A + EPIQGE G I+P DG+L + D C K +++ IADE+Q+G A
Sbjct: 215 AITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFA 274
Query: 272 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLAS 331
R+G M A + E + PD+++ + GG +P+SAV E+M G T+GGNP+A
Sbjct: 275 RTGAMFACEHEGIDPDLIVTAXGIAGG-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPIAC 333
Query: 332 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 391
A A+A+++ I E L R+ + + ++ L ++Q + + + +VRGRG A+E K
Sbjct: 334 AAALATIETIESEGLVARAQQIEKIMKDRLGRLQAE-DDRIGDVRGRGAMIAMELVKAGT 392
Query: 392 PVSAYD----ICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
D +C G +L+ T+ +VR PPLSI + L EG L +VL
Sbjct: 393 TEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 210/403 (52%), Gaps = 40/403 (9%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF--- 114
PI +A+ +WD EG +YLDF + +N GH HPK++ A++ Q +KL+ +
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY 83
Query: 115 --YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
Y + + +++ F +L + TG+E VE A+K+AR + + ++
Sbjct: 84 EPYLELCEIMNQKVPGDFAKKTLL-VTTGSEAVENAVKIARA--------ATKRSGTIAF 134
Query: 173 CGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHL----------KVDFGD-ITALEKIFKE 220
G +HGRT ++++ N G G L+PGH+ + D I ++ +IFK
Sbjct: 135 SGAYHGRTHYTLALTGKVNPYSAGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKN 193
Query: 221 SG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+ IA + EP+QGE G +++ +R LC ++ I++IADE+QSG R+G + A
Sbjct: 194 DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFA 253
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL 338
+ V PD+ K++ GG P++ V EVM + PG G T+ GNP+A A+ L
Sbjct: 254 MEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVL 312
Query: 339 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALP 392
V E L +++ LG++L+ L I ++ P + +VRG G A+E +K
Sbjct: 313 KVFEQENLLQKANDLGQKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAK 371
Query: 393 VSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEG 433
++A +I + +++G +L+ + ++R+ PL+I ++++G
Sbjct: 372 LTA-EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 210/403 (52%), Gaps = 40/403 (9%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF--- 114
PI +A+ +WD EG +YLDF + +N GH HPK++ A++ Q +KL+ +
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAGGQAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY 83
Query: 115 --YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
Y + + +++ F +L + TG+E VE A+K+AR + + ++
Sbjct: 84 EPYLELCEIMNQKVPGDFAKKTLL-VTTGSEAVENAVKIARA--------ATKRSGTIAF 134
Query: 173 CGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHL----------KVDFGD-ITALEKIFKE 220
G +HGRT ++++ N G G L+PGH+ + D I ++ +IFK
Sbjct: 135 SGAYHGRTHYTLALTGKVNPYSAGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKN 193
Query: 221 SG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+ IA + EP+QGE G +++ +R LC ++ I++IADE+QSG R+G + A
Sbjct: 194 DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFA 253
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL 338
+ V PD+ K++ GG P++ V EVM + PG G T+ GNP+A A+ L
Sbjct: 254 MEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVL 312
Query: 339 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALP 392
V E L +++ LG++L+ L I ++ P + +VRG G A+E +K
Sbjct: 313 KVFEQENLLQKANDLGQKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAK 371
Query: 393 VSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEG 433
++A +I + +++G +L+ + ++R+ PL+I ++++G
Sbjct: 372 LTA-EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 209/403 (51%), Gaps = 40/403 (9%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF--- 114
PI +A+ +WD EG +YLDF + +N GH HPK++ A++ Q +KL+ +
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY 83
Query: 115 --YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
Y + + +++ F +L + TG+E VE A+K+AR + + ++
Sbjct: 84 EPYLELCEIMNQKVPGDFAKKTLL-VTTGSEAVENAVKIARA--------ATKRSGTIAF 134
Query: 173 CGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHL----------KVDFGD-ITALEKIFKE 220
G +HGRT ++++ N G G L+PGH+ + D I ++ +IFK
Sbjct: 135 SGAYHGRTHYTLALTGKVNPYSAGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKN 193
Query: 221 SG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+ IA + EP+QGE G +++ +R LC ++ I++IADE QSG R+G + A
Sbjct: 194 DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFA 253
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL 338
+ V PD+ K++ GG P++ V EVM + PG G T+ GNP+A A+ L
Sbjct: 254 MEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVL 312
Query: 339 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALP 392
V E L +++ LG++L+ L I ++ P + +VRG G A+E +K
Sbjct: 313 KVFEQENLLQKANDLGQKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAK 371
Query: 393 VSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEG 433
++A +I + +++G +L+ + ++R+ PL+I ++++G
Sbjct: 372 LTA-EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 209/403 (51%), Gaps = 40/403 (9%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF--- 114
PI +A+ +WD EG +YLDF + +N GH HPK++ A++ Q +KL+ +
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY 83
Query: 115 --YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
Y + + +++ F +L + TG+E VE A+K+AR + + ++
Sbjct: 84 EPYLELCEIMNQKVPGDFAKKTLL-VTTGSEAVENAVKIARA--------ATKRSGTIAF 134
Query: 173 CGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHL----------KVDFGD-ITALEKIFKE 220
G +HGRT ++++ N G G L+PGH+ + D I ++ +IFK
Sbjct: 135 SGAYHGRTHYTLALTGKVNPYSAGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKN 193
Query: 221 SG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+ IA + EP+QG G +++ +R LC ++ I++IADE+QSG R+G + A
Sbjct: 194 DAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFA 253
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL 338
+ V PD+ K++ GG P++ V EVM + PG G T+ GNP+A A+ L
Sbjct: 254 MEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVL 312
Query: 339 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALP 392
V E L +++ LG++L+ L I ++ P + +VRG G A+E +K
Sbjct: 313 KVFEQENLLQKANDLGQKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAK 371
Query: 393 VSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEG 433
++A +I + +++G +L+ + ++R+ PL+I ++++G
Sbjct: 372 LTA-EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 202/416 (48%), Gaps = 41/416 (9%)
Query: 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY- 115
+P+ +A G + D +GN+ +D S + G+ P+++ A+++Q E+ T +
Sbjct: 60 LPVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQVEQFTHTCFMVTP 119
Query: 116 NDKFPVFAE---RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
+++ AE R+T G + N+GAE VE ++K+AR + + D A
Sbjct: 120 YEQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVARAHTRKQAVVAFDYA----- 174
Query: 173 CGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFG----------DIT--------- 212
+HGRT ++++ + + GFGP P + DI
Sbjct: 175 ---YHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGELAAER 231
Query: 213 ALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271
A+ I K+ G +A + EPI GE G I+P DG+L A++ C +++ IADE+Q+G A
Sbjct: 232 AINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFA 291
Query: 272 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLAS 331
R+G M A D E V PD+++ + G P+SAV E+M G TFGGNP+A
Sbjct: 292 RTGAMFACDHENVEPDLIVTAXGIADG-FPLSAVTGRAEIMDAPHTSGLGGTFGGNPVAC 350
Query: 332 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK--T 389
A A+A+++ I + + ER+ + + L ++Q + + +VRGRG A+E K T
Sbjct: 351 AAALATIETIERDGMVERARQIERLVMDRLLRLQAA-DDRLGDVRGRGAMIAMELVKSGT 409
Query: 390 ALPVSAYDICLKMKERG----ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
A P +A L +L ++RL PPL+IS L EG L +L
Sbjct: 410 AEPDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTISDELLSEGLDILCQIL 465
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 198/418 (47%), Gaps = 51/418 (12%)
Query: 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-------- 108
+P+ A G + D +GN+ +DF S + G+ P ++ A+ +Q T
Sbjct: 50 LPVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAAFTHTCFMVTP 109
Query: 109 ----LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSI 164
+ N P E+ T++F N+GAE VE A+K+AR + +
Sbjct: 110 YEGYVKVAEHLNRLTPGDHEKRTALF--------NSGAEAVENAVKIARAYTRRQAVVVF 161
Query: 165 DEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPL------LPGHLKVDFGDI------ 211
D A +HGRT ++M+ N+ + GFGP +P G+
Sbjct: 162 DHA--------YHGRTNLTMAMTAKNQPYKHGFGPFANEVYRVPTSYPFRDGETDGAAAA 213
Query: 212 -TALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269
AL+ I K+ G D +A + EP+ GE G ++P G+L A++ C+ + +ADE+Q+G
Sbjct: 214 AHALDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTG 273
Query: 270 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPL 329
AR+G + A + E V PD+++ K + GG +P+SAV E+M Q G G T+GGNPL
Sbjct: 274 FARTGALFACEHENVVPDLIVTAKGIAGG-LPLSAVTGRAEIMDGPQSGGLGGTYGGNPL 332
Query: 330 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT 389
A A A+A +D I E L R+ +GE + L + P + EVRGRG AVE K
Sbjct: 333 ACAAALAVIDTIERENLVARARAIGETMLSRLGALAAADPR-IGEVRGRGAMIAVELVKP 391
Query: 390 ALPVSAYDICLKMKERG------ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
D+ ++ +L T+ ++R PPLS+ + L EG L V
Sbjct: 392 GTTEPDADLTKRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDILAAVF 449
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 201/424 (47%), Gaps = 58/424 (13%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P++ +AKGS ++D +G LDF S + GHCHP+I+ + E A KL +
Sbjct: 26 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLSR 85
Query: 118 KFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 175
A RL ++ G D L ++TGAE E A+++A+ V K+ I V
Sbjct: 86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQS 137
Query: 176 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKV----------------------DFGDITA 213
+HG T AA S + + +G GP G + D+ A
Sbjct: 138 WHGMTGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY----A 192
Query: 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
+ I ++S +A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R+
Sbjct: 193 FDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT 252
Query: 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGN 327
G M A + V PD++ L K LG G +P++A++ I+ H +T +
Sbjct: 253 GTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSD 307
Query: 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387
PL +AV + LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE
Sbjct: 308 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIV 366
Query: 388 K---TALPVSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438
K T P C+ + I+ P + R+ PPL++S +E+ G L
Sbjct: 367 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 426
Query: 439 DVLE 442
+E
Sbjct: 427 QAIE 430
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 201/424 (47%), Gaps = 58/424 (13%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P++ +AKGS ++D +G LDF S + GHCHP+I+ + E A KL +
Sbjct: 25 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLSR 84
Query: 118 KFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 175
A RL ++ G D L ++TGAE E A+++A+ V K+ I V
Sbjct: 85 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQS 136
Query: 176 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKV----------------------DFGDITA 213
+HG T AA S + + +G GP G + D+ A
Sbjct: 137 WHGMTGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY----A 191
Query: 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
+ I ++S +A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R+
Sbjct: 192 FDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT 251
Query: 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGN 327
G M A + V PD++ L K LG G +P++A++ I+ H +T +
Sbjct: 252 GTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSD 306
Query: 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387
PL +AV + LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE
Sbjct: 307 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIV 365
Query: 388 K---TALPVSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438
K T P C+ + I+ P + R+ PPL++S +E+ G L
Sbjct: 366 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 425
Query: 439 DVLE 442
+E
Sbjct: 426 QAIE 429
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 201/424 (47%), Gaps = 58/424 (13%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P++ +AKGS ++D +G LDF S + GHCHP+I+ + E A KL +
Sbjct: 26 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 85
Query: 118 KFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 175
A RL ++ G D L ++TGAE E A+++A+ V K+ I V
Sbjct: 86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQS 137
Query: 176 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKV----------------------DFGDITA 213
+HG T AA S + + +G GP G + D+ A
Sbjct: 138 WHGMTGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY----A 192
Query: 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
+ I ++S +A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R+
Sbjct: 193 FDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT 252
Query: 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGN 327
G M A + V PD++ L K LG G +P++A++ I+ H +T +
Sbjct: 253 GTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSD 307
Query: 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387
PL +AV + LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE
Sbjct: 308 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIV 366
Query: 388 K---TALPVSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438
K T P C+ + I+ P + R+ PPL++S +E+ G L
Sbjct: 367 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 426
Query: 439 DVLE 442
+E
Sbjct: 427 QAIE 430
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 201/424 (47%), Gaps = 58/424 (13%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P++ +AKGS ++D +G LDF S + GHCHP+I+ + E A KL +
Sbjct: 24 PMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83
Query: 118 KFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 175
A RL ++ G D L ++TGAE E A+++A+ V K+ I V
Sbjct: 84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQS 135
Query: 176 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKV----------------------DFGDITA 213
+HG T AA S + + +G GP G + D+ A
Sbjct: 136 WHGMTGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY----A 190
Query: 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
+ I ++S +A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R+
Sbjct: 191 FDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT 250
Query: 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGN 327
G M A + V PD++ L K LG G +P++A++ I+ H +T +
Sbjct: 251 GTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSD 305
Query: 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387
PL +AV + LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE
Sbjct: 306 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIV 364
Query: 388 K---TALPVSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438
K T P C+ + I+ P + R+ PPL++S +E+ G L
Sbjct: 365 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 424
Query: 439 DVLE 442
+E
Sbjct: 425 QAIE 428
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 210/431 (48%), Gaps = 44/431 (10%)
Query: 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR 112
+Y P++ G + D G +Y D S+ GH ++ A+++Q K+ S+
Sbjct: 22 DYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTL 81
Query: 113 -AFYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 169
N AE L + + V ++GAE +E ALK+A + Y K ++
Sbjct: 82 LGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMA--FQYWKNIGKPEKQKF 139
Query: 170 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--------PGHLKVDFGD--------ITA 213
++ +HG T+ A+S+ +GPL+ P + + GD +
Sbjct: 140 IAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRE 199
Query: 214 LEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272
L ++ +E ++IA E +QG +G+I+ P+GYL VR+LC+ Y++LMI DE+ +G R
Sbjct: 200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGR 259
Query: 273 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC-------IQPGEHGSTFG 325
+G+M A + E V+PD++ GK + GG +P++ A +++ ++ HG ++
Sbjct: 260 TGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYT 319
Query: 326 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385
GN L AVA+ +L + E + E+ A ++L L + P +V ++R G E
Sbjct: 320 GNQLGCAVALENLALFESENIVEQVAEKSKKL-HFLLQDLHALP-HVGDIRQLGFMCGAE 377
Query: 386 F---DKTALPVSA-----YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE----G 433
+T P A Y + LKM+E G+L +P D I L PPL+ ++ EL E
Sbjct: 378 LVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFL-PPLASTAEELSEMVAIM 436
Query: 434 SKALHDVLELD 444
+A+H+V L+
Sbjct: 437 KQAIHEVTSLE 447
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 210/431 (48%), Gaps = 44/431 (10%)
Query: 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR 112
+Y P++ G + D G +Y D S+ GH ++ A+++Q K+ S+
Sbjct: 22 DYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTL 81
Query: 113 -AFYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 169
N AE L + + V ++GAE +E ALK+A + Y K ++
Sbjct: 82 LGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMA--FQYWKNIGKPEKQKF 139
Query: 170 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--------PGHLKVDFGD--------ITA 213
++ +HG T+ A+S+ +GPL+ P + + GD +
Sbjct: 140 IAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQXLRE 199
Query: 214 LEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272
L ++ +E ++IA E +QG +G+I+ P+GYL VR+LC+ Y++LMI DE+ +G R
Sbjct: 200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGR 259
Query: 273 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC-------IQPGEHGSTFG 325
+G+M A + E V+PD++ GK + GG +P++ A +++ ++ HG ++
Sbjct: 260 TGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYT 319
Query: 326 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385
GN L AVA+ +L + E + E+ A ++L L + P +V ++R G E
Sbjct: 320 GNQLGCAVALENLALFESENIVEQVAEKSKKL-HFLLQDLHALP-HVGDIRQLGFMCGAE 377
Query: 386 F---DKTALPVSA-----YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE----G 433
+T P A Y + LKM+E G+L +P D I L PPL+ ++ EL E
Sbjct: 378 LVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFL-PPLASTAEELSEMVAIM 436
Query: 434 SKALHDVLELD 444
+A+H+V L+
Sbjct: 437 KQAIHEVTSLE 447
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/430 (27%), Positives = 204/430 (47%), Gaps = 44/430 (10%)
Query: 42 LINLEYEYSAHNYHPVP----IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIM 97
L+ + +Y H P V ++A+G + D +G +YLD S VN G+ ++
Sbjct: 12 LLAKDEQYVWHGXRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGXSGLWCVNSGYGRKELA 71
Query: 98 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPM-NTGAEGVETALKLARKWG 156
+A +Q + L+ + ++ AE+L G + V+ N+G+E ETA K+AR+
Sbjct: 72 EAAYKQLQTLSYFPXSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQ-- 129
Query: 157 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV---------- 206
Y +K S +HG T A + + + + P G L V
Sbjct: 130 YYAQKGEPHRYKFXSRYRGYHGNTXATXAATGQAQRRYQYEPFASGFLHVTPPDCYRXPG 189
Query: 207 ----DFGDITALEKIFK----ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258
+ D+ ++++ + E + IA F+ EPI G++ P Y KAV + C K+
Sbjct: 190 IERENIYDVECVKEVDRVXTWELSETIAAFIXEPIITGGGILXAPQDYXKAVHETCQKHG 249
Query: 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ-P 317
L+I+DE+ G R+G+ +V+PD++ K + +P+SA +E+ +
Sbjct: 250 ALLISDEVICGFGRTGKAFGFXNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGK 309
Query: 318 GE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYV 372
GE H +TFGGNP A A+A+ +L++I +E L ERSA G L + L + + P V
Sbjct: 310 GEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQXGSLLLEQLKEEIGEHP-LV 368
Query: 373 KEVRGRGLFNAVEF---DKTALPVSAYDICLKM---KERGIL------AKPTHDTIVRLT 420
++RG+GL +E +T P+ I + KE+G++ ++ I+ L
Sbjct: 369 GDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGXTTAGYNNILTLA 428
Query: 421 PPLSISSNEL 430
PPL ISS E+
Sbjct: 429 PPLVISSEEI 438
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 125/410 (30%), Positives = 202/410 (49%), Gaps = 36/410 (8%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN- 116
P+ A G I D +GN ++D + + G HP + A+ +QA T +
Sbjct: 47 PVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPY 106
Query: 117 DKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173
+++ AE L ++ D N+GAE VE A+K+AR + +V+
Sbjct: 107 EQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVAR--------LATGRPAVVAFD 158
Query: 174 GCFHGRTLAAISMSCDNEAIRG-FGPLLPGHLKV-------DFGDIT-------ALEKIF 218
+HGRT ++++ + + FGP P ++ D +T A+ +I
Sbjct: 159 NAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIE 218
Query: 219 KESGDQ-IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277
+ G Q +A + EPIQGE G I+P G+L + S+ ++ IADE+Q+G AR+G
Sbjct: 219 TQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF 278
Query: 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 337
AS+ E + PD+V + + GG +P+SAV E+M + G G T+GGNP+ A A+A+
Sbjct: 279 ASEHEGIVPDIVTMAXGIAGG-MPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAA 337
Query: 338 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK--TALPVSA 395
L V+R+ L R+ + + L + ++ + + EVRGRG A+E K T P +A
Sbjct: 338 LGVMRELDLPARARAIEASVTSRLSALAEEV-DIIGEVRGRGAMLAIEIVKPGTLEPDAA 396
Query: 396 Y--DICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
I + +G IL T ++RL PPL I + L EG AL D++
Sbjct: 397 LTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDII 446
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 198/429 (46%), Gaps = 52/429 (12%)
Query: 50 SAHNYHPVP----------IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKA 99
+AH+ HP V ++ +G +WD EGNK +D ++ VN G+ +A
Sbjct: 15 AAHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEA 74
Query: 100 LQEQAEKLTLSSRAFYNDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLAR 153
+ Q E+L + F+ P E L+S+ G+D V N+G+E V+T +++ R
Sbjct: 75 ARRQMEELPFYN-TFFKTTHPAVVE-LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVR 132
Query: 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD------ 207
++ V+ K ++ ++ +HG T+ S+ +PG ++
Sbjct: 133 RYWDVQGK--PEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYK 190
Query: 208 ---------FGDITAL---EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS 255
FG + A EKI + D++A F+ EPIQG GVI+PP Y + +C
Sbjct: 191 HGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICR 250
Query: 256 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI 315
KY++L++ADE+ G R+G +PD+ K L G +P+ AV K V +
Sbjct: 251 KYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGL 310
Query: 316 QPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAER-SAHLGEELRQHLFKIQQQFPNY 371
G HG T+ G+P+ +AVA A++ +RDE + +R +G +++ + +F +
Sbjct: 311 IAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRF-EH 369
Query: 372 VKEVRGRGLFNAVEFDKTALPVSAY-------DICLKMKER-GILAKPTHDTIVRLTPPL 423
V +VRG G+ A K + +C + R ++ + D IV PPL
Sbjct: 370 VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVS-APPL 428
Query: 424 SISSNELQE 432
++ E+ E
Sbjct: 429 VMTRAEVDE 437
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 166/352 (47%), Gaps = 28/352 (7%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
PIVF KG+ IWD +GN+Y+D++ ++ GH HP+++ AL EK T +
Sbjct: 19 PIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDALHAALEKGTSFGAPCLLE 78
Query: 118 KFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 176
+ AE + + +MV +N+G E L+L R + +K ++ GC+
Sbjct: 79 N--ILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYTQREK--------VIKFEGCY 128
Query: 177 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--------FGDITALEKIFKESGDQIAGF 228
HG + + A G P PG K + D+ A+ ++F++ + IAG
Sbjct: 129 HGHADMFLVKAGSGVATLGL-PDSPGVPKATTAATLTAPYNDLEAVSRLFEQYPNDIAGV 187
Query: 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 288
+ EP+ G AG I P G+L+ +R+L +Y L++ DE+ +G R A + V PD+
Sbjct: 188 ILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGF-RIAYGGAQEKFGVTPDL 246
Query: 289 VILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDVIRDEK 345
LGK +GGG +PV A E+M + P T GNPLA I +L+++
Sbjct: 247 TTLGKVIGGG-LPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEILSRPG 305
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 397
E + +L Q L ++F + V G+F TA PV+ Y+
Sbjct: 306 SYEHLDRITGKLVQGLLDAAREFGHEVCGGHISGMFGLF---FTAGPVTNYE 354
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 200/415 (48%), Gaps = 46/415 (11%)
Query: 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-- 114
VP+ A G I D +GN ++D S + + G P ++ A+QE A T +
Sbjct: 46 VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTP 105
Query: 115 YNDKFPVFAE--RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
Y V + RLT + N+GAE VE A+K+AR + +V+
Sbjct: 106 YEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVAR--------LATGRDAVVAF 157
Query: 173 CGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFG------------------DITA 213
+HGRT ++++ + FGP P ++ IT
Sbjct: 158 DHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITM 217
Query: 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
+EK + GDQ+A + EPIQGE G I+P +G+L A+ + + I+ IADE+QSG R+
Sbjct: 218 IEK--QIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRT 275
Query: 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAV 333
G A D E V PD++ + K + GG +P+SA+ +++ + PG G T+GGNP+A A
Sbjct: 276 GEWFAVDHEGVVPDIITMAKGIAGG-LPLSAITGRADLLDAVHPGGLGGTYGGNPVACAA 334
Query: 334 AIASLDVIRDEKLAERSAHLGE----ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK- 388
A+A++D + L R+ H+ E +LR+ ++ + V ++RGRG A+E +
Sbjct: 335 ALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQP 394
Query: 389 ------TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437
L + CLK + IL T+ ++RL PPL IS L +G + L
Sbjct: 395 GSKEPNAELTKAVAAACLK-EGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVL 448
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 176/385 (45%), Gaps = 50/385 (12%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFY 115
PIVF + K + WD +GN+Y+D++ + GH HP++++AL+ EK T A
Sbjct: 40 PIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALE 99
Query: 116 NDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
N V AE + +MV +N+G E L+L R + K I+ G
Sbjct: 100 N----VLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDK--------IIKFEG 147
Query: 175 CFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIA 226
C+HG + + A G P PG L + D+ A++ +F E+ +IA
Sbjct: 148 CYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIA 206
Query: 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE--- 283
G + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R+ +E
Sbjct: 207 GVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF----RIAYGGVQEKFG 262
Query: 284 VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDV 340
V PD+ LGK +GGG +PV A +E+M + P T GNPLA I +L++
Sbjct: 263 VTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 321
Query: 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL 400
+R E + + L L I Q+ + + G+F F T PV Y+
Sbjct: 322 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAK 378
Query: 401 K------------MKERGILAKPTH 413
K M E+GI P+
Sbjct: 379 KSDLQKFSRFHRGMLEQGIYLAPSQ 403
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 176/385 (45%), Gaps = 50/385 (12%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFY 115
PIVF + K + WD +GN+Y+D++ + GH HP++++AL+ EK T A
Sbjct: 35 PIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALE 94
Query: 116 NDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
N V AE + +MV +N+G E L++ R + K I+ G
Sbjct: 95 N----VLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDK--------IIKFEG 142
Query: 175 CFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIA 226
C+HG + + A G P PG L + D+ A++ +F E+ +IA
Sbjct: 143 CYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIA 201
Query: 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE--- 283
G + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R+ +E
Sbjct: 202 GVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF----RIAYGGVQEKFG 257
Query: 284 VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDV 340
V PD+ LGK +GGG +PV A +E+M + P T GNPLA I +L++
Sbjct: 258 VTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL 400
+R E + + L L I Q+ + + G+F F T PV Y+
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAK 373
Query: 401 K------------MKERGILAKPTH 413
K M E+GI P+
Sbjct: 374 KSDLQKFSRFHRGMLEQGIYLAPSQ 398
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 176/385 (45%), Gaps = 50/385 (12%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFY 115
PIVF + K + WD +GN+Y+D++ + GH HP++++AL+ EK T A
Sbjct: 40 PIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALE 99
Query: 116 NDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
N V AE + +MV +N+G E L++ R + K I+ G
Sbjct: 100 N----VLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDK--------IIKFEG 147
Query: 175 CFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIA 226
C+HG + + A G P PG L + D+ A++ +F E+ +IA
Sbjct: 148 CYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIA 206
Query: 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE--- 283
G + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R+ +E
Sbjct: 207 GVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF----RIAYGGVQEKFG 262
Query: 284 VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDV 340
V PD+ LGK +GGG +PV A +E+M + P T GNPLA I +L++
Sbjct: 263 VTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 321
Query: 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL 400
+R E + + L L I Q+ + + G+F F T PV Y+
Sbjct: 322 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAK 378
Query: 401 K------------MKERGILAKPTH 413
K M E+GI P+
Sbjct: 379 KSDLQKFSRFHRGMLEQGIYLAPSQ 403
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 176/385 (45%), Gaps = 50/385 (12%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFY 115
PIVF + K + WD +GN+Y+D++ + GH HP++++AL+ EK T A
Sbjct: 35 PIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALE 94
Query: 116 NDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
N V AE + +MV +N+G E L+L R + K I+ G
Sbjct: 95 N----VLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDK--------IIKFEG 142
Query: 175 CFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIA 226
C+HG + + A G P PG L + D+ A++ +F E+ +IA
Sbjct: 143 CYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIA 201
Query: 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE--- 283
G + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R+ +E
Sbjct: 202 GVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF----RIAYGGVQEKFG 257
Query: 284 VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDV 340
V PD+ LGK +GGG +PV A +E+M + P T GNPLA I +L++
Sbjct: 258 VTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL 400
+R E + + L L I Q+ + + G+F F T PV Y+
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAK 373
Query: 401 K------------MKERGILAKPTH 413
K M E+GI P+
Sbjct: 374 KSDLQKFSRFHRGMLEQGIYLAPSQ 398
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 122/448 (27%), Positives = 203/448 (45%), Gaps = 61/448 (13%)
Query: 49 YSAHNYHPVP-------IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQ 101
YS + + +P +V + +G I D G +YLD S + G H ++ A +
Sbjct: 28 YSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAK 87
Query: 102 EQAEKLTLSSRAFY---NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWG 156
Q E+ AF+ +D+ + +E+L + +D V N+G+E +T +K+ W
Sbjct: 88 AQYERFP-GYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKML--WF 144
Query: 157 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD--NEAIRGFGPLLPGHLKVD------F 208
+ + I++ +HG T + SM+ N FG LPG + + +
Sbjct: 145 LHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSV---FGLPLPGFVHLTCPHYWRY 201
Query: 209 GDITALEKIF-------------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS 255
G+ E+ F +E D IAGF EP+ G GVI P GY +A+ +
Sbjct: 202 GEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILR 261
Query: 256 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV---- 311
KY+I +I+DE+ G R+G + PD +I K L G P+ AV+ E+
Sbjct: 262 KYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRL 321
Query: 312 ---MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF 368
+ I+ HG T G+P+ A+A+ ++DV+ +E LAE L + L I ++
Sbjct: 322 ETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAER- 380
Query: 369 PNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--------GILAKPTHDTIVRLT 420
PN + E RG G A+E K + +D L + ER G++ +P ++V L
Sbjct: 381 PN-IGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVV-LC 438
Query: 421 PPLSISSNELQEGSKALHDVLELDLPKM 448
PP ++ ++ E + D LE L K+
Sbjct: 439 PPFILTEAQMDE----MFDKLEKALDKV 462
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 160/302 (52%), Gaps = 32/302 (10%)
Query: 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK-LTLSSRAFY 115
P + +G+ +WD +GN+YLD++ ++ + GH HPK++ ++E E+ LT + +
Sbjct: 34 TPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPL 93
Query: 116 NDKFPVFAERLTSMFGY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
A+++ + + D+V +N+G E +AL+LAR GY + + IV G
Sbjct: 94 EV---ALAKKVKRAYPFVDLVRFVNSGTEATMSALRLAR--GYTGRPY------IVKFRG 142
Query: 175 CFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIA 226
+HG + + G P G L +++ D L ++ K G++IA
Sbjct: 143 NYHGHADGLLVEAGSGALTLGV-PSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIA 201
Query: 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEV 284
+FEP+ G AGV++P + +LKA+ + Y +L+IADE+ +G LA G A++ +
Sbjct: 202 AIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGG---ATELLGL 257
Query: 285 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQ---PGEHGSTFGGNPLASAVAIASLDVI 341
+PD+V LGK LGGG +P +A +E+M + P T GNPLA A +A+L+++
Sbjct: 258 KPDLVTLGKILGGG-LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL 316
Query: 342 RD 343
+
Sbjct: 317 EE 318
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 176/385 (45%), Gaps = 50/385 (12%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFY 115
PIVF + K + WD +GN+Y+D++ + GH HP++++AL+ EK T A
Sbjct: 35 PIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALE 94
Query: 116 NDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
N V AE + +MV +N+G E L++ R + K I+ G
Sbjct: 95 N----VLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDK--------IIKFEG 142
Query: 175 CFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIA 226
C+HG + + A G P PG L + D+ A++ +F E+ +IA
Sbjct: 143 CYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIA 201
Query: 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE--- 283
G + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R+ +E
Sbjct: 202 GVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF----RIAYGGVQEKFG 257
Query: 284 VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDV 340
V PD+ LGK +GGG +PV A +E+M + P T GNPLA I +L++
Sbjct: 258 VTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL 400
+R E + + L L I Q+ + + G+F F T PV Y+
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAK 373
Query: 401 K------------MKERGILAKPTH 413
K M E+GI P+
Sbjct: 374 KSDLQKFSRFHRGMLEQGIYLAPSQ 398
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/415 (27%), Positives = 192/415 (46%), Gaps = 39/415 (9%)
Query: 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108
Y + +PV + + +G ++D G +YLD S N GH ++ + + QA +L
Sbjct: 6 YRSSKPYPVAV---RGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP 62
Query: 109 -LSSRAFYNDKFPVFAERLTSMFGYDMV--LPMNTGAEGVETALKLARKWGYVKKKFSID 165
+ F +D +A RL G ++ G+E E+A+KLAR+ Y ++
Sbjct: 63 FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQ--YHVERGEPG 120
Query: 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL----------PGHLKVDFGDITALE 215
+++ +HG +L +++ S + PL+ P + D L
Sbjct: 121 RFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLR 180
Query: 216 KIFKESG-DQIAGFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
+ + G + +A F+ EP+ G + + P GY + VRD+C + I+ IADE+ SG+ R
Sbjct: 181 ALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRC 240
Query: 274 GRMLA-SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE----HGSTFGGNP 328
G LA S W V PD+ +LGK L G P++ +LA +V + G HG T+ G+P
Sbjct: 241 GSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHP 300
Query: 329 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 388
++ A ++ LD++ E L + G +L L +Q +FP + +VRG GL V
Sbjct: 301 VSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMM-QVRGTGLLLGVVLGD 359
Query: 389 TA------LPVSAYDICLKMKERGILAKPTHDTI-------VRLTPPLSISSNEL 430
A P A I +RG++ P + L PPLSI++ E+
Sbjct: 360 LATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEV 414
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 121/447 (27%), Positives = 200/447 (44%), Gaps = 59/447 (13%)
Query: 49 YSAHNYHPVP-------IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQ 101
YS + + +P +V + +G I D G +YLD S + G H ++ A +
Sbjct: 34 YSLYGWTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAK 93
Query: 102 EQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGY 157
Q E+ AF +D+ + +E+L + +D V N+G+E +T +K+ W
Sbjct: 94 AQYERFPGYHAAFGKMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKML--WFL 151
Query: 158 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSC--DNEAIRGFGPLLPGHLKVD------FG 209
+ + I++ +HG T + SM+ N FG LPG + + +G
Sbjct: 152 HAAEGKPQKRKILTRWNAYHGATAVSASMTGFPYNSV---FGLPLPGFVHLTCPHYWRYG 208
Query: 210 DITALEKIF-------------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 256
+ E+ F +E D IAGF EP+ G GVI P GY +A+ + K
Sbjct: 209 EEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRK 268
Query: 257 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV----- 311
Y+I +I+DE+ G R+G + PD +I L G P+ AV+ E+
Sbjct: 269 YDIPVISDEVVCGFGRTGNTWGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLE 328
Query: 312 --MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP 369
+ I+ HG T G+P+ A+A+ ++DV+ +E LAE L + L I ++ P
Sbjct: 329 TAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAER-P 387
Query: 370 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--------GILAKPTHDTIVRLTP 421
N + E RG G A+E K + +D L + ER G++ P ++V L P
Sbjct: 388 N-IGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICFPLGQSVV-LCP 445
Query: 422 PLSISSNELQEGSKALHDVLELDLPKM 448
P ++ ++ E + D LE L K+
Sbjct: 446 PFILTEAQMDE----MFDKLEKALDKV 468
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/440 (26%), Positives = 197/440 (44%), Gaps = 53/440 (12%)
Query: 49 YSAHNYHPVP-------IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQ 101
YS + + +P +V + +G I D G +YLD S + G H +++A +
Sbjct: 26 YSLYGFTDMPSVHQRGTVVVTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAK 85
Query: 102 EQAEKLTLSSRAFY---NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWG 156
Q ++ AF+ +D+ + +E+L + +D V N+G+E +T +K+ W
Sbjct: 86 AQYDRFP-GYHAFFGRMSDQTVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKML--WF 142
Query: 157 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD------FGD 210
+ + I++ +HG T + SM+ FG LPG + + +G+
Sbjct: 143 LHAAEGKPQKRKILTRWNAYHGVTAVSASMT-GKPYNSVFGLPLPGFIHLTCPHYWRYGE 201
Query: 211 ITALEKIF-------------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 257
E F +E D IAGF EP+ G GVI P GY +A+ + KY
Sbjct: 202 EGETEAQFVARLARELEDTITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY 261
Query: 258 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV------ 311
+I MI+DE+ G R+G + PD +I L G P+ AV+ ++
Sbjct: 262 DIPMISDEVICGFGRTGNTWGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEA 321
Query: 312 -MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPN 370
+ I+ HG T G+P+ A+A+ ++DV+ +E LAE L L +I + PN
Sbjct: 322 AVEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADR-PN 380
Query: 371 YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--------GILAKPTHDTIVRLTPP 422
+ E RG G A+E K + +D L + ER G++ +P +IV L PP
Sbjct: 381 -IGEYRGIGFMWALEAVKDKPTKTPFDANLSVSERIANTCTDLGLICRPLGQSIV-LCPP 438
Query: 423 LSISSNELQEGSKALHDVLE 442
++ ++ E + L L+
Sbjct: 439 FILTEAQMDEMFEKLEKALD 458
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 116/424 (27%), Positives = 188/424 (44%), Gaps = 48/424 (11%)
Query: 59 IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY--- 115
+V + +G I D G +YLD S G H ++ A + Q E+ AF+
Sbjct: 51 VVVTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFP-GYHAFFGRX 109
Query: 116 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173
+D+ +E+L + +D V N+G+E +T +K W + + I++
Sbjct: 110 SDQTVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXL--WFLHAAEGKPQKRKILTRW 167
Query: 174 GCFHGRTLAAISMSCDNEAIRG-FGPLLPGHLKVD------FGDITALEKIF-------- 218
+HG T A+S S + FG LPG + + +G+ E+ F
Sbjct: 168 NAYHGVT--AVSASXTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAREL 225
Query: 219 -----KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
+E D IAGF EP+ G GVI P GY +A+ + KY+I +I+DE+ G R+
Sbjct: 226 EETIQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRT 285
Query: 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-------MLCIQPGEHGSTFGG 326
G + PD +I K L G P AV+ E+ + I+ HG T G
Sbjct: 286 GNTWGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASG 345
Query: 327 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 386
+P+ A+A+ ++DV+ +E LAE L + L I ++ PN + E RG G A+E
Sbjct: 346 HPVGCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAER-PN-IGEYRGIGFXWALEA 403
Query: 387 DKTALPVSAYDICLKMKER--------GILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438
K + +D L + ER G++ +P ++V L PP ++ + E L
Sbjct: 404 VKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVV-LCPPFILTEAQXDEXFDKLE 462
Query: 439 DVLE 442
L+
Sbjct: 463 KALD 466
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 150/321 (46%), Gaps = 31/321 (9%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
PI + KG+ WD +GNKY+D+L+AY + GH HP I KA+ AE L Y
Sbjct: 38 PIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVL-----YGT 92
Query: 118 KFPV---FAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173
+ FA+ L D V +N+G E V T +++AR + K I
Sbjct: 93 PTALEVKFAKXLKEAXPALDKVRFVNSGTEAVXTTIRVARAYTGRTK--------IXKFA 144
Query: 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQI 225
GC+HG + + + + G P G + V F ++ L++ + G ++
Sbjct: 145 GCYHGHSDLVLVAAGSGPSTLGT-PDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEV 203
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285
A L EPI G G++ P G+L+ V +L + L+I DE+ + R A D V
Sbjct: 204 AAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFXYGGAQDLLGVT 262
Query: 286 PDMVILGKALGGGVIPVSAVLADKEV---MLCIQPGEHGSTFGGNPLASAVAIASLDVIR 342
PD+ LG +GGG +P+ A KE+ + + P T GNP + A IA L+V++
Sbjct: 263 PDLTALGXVIGGG-LPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACLEVLQ 321
Query: 343 DEKLAERSAHLGEELRQHLFK 363
E L E+ LG L + + +
Sbjct: 322 QEGLYEKLDELGATLEKGILE 342
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 183/398 (45%), Gaps = 37/398 (9%)
Query: 69 IWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTS 128
I D + + LD +S++ GH HP + +AL Q L + + + A RL
Sbjct: 69 IRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQ---LRVMNHVMFGGLTHEPAARLAK 125
Query: 129 MF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA 182
+ G D V ++G+ VE A K+A + Y + + + +++ G +HG T
Sbjct: 126 LLVDITPAGLDTVFFSDSGSVSVEVAAKMALQ--YWRGRGLPGKRRLMTWRGGYHGDTFL 183
Query: 183 AISMSCDNE-----------AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231
A+S+ CD A + F P +P D A E + ++A + E
Sbjct: 184 AMSI-CDPHGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQLAQHAGELAAVVVE 240
Query: 232 PI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI 290
P+ QG G+ YL +RD+C +Y +L+I DEI +G R+G + A+D V PD++
Sbjct: 241 PVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMC 300
Query: 291 LGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEK 345
+GKAL GG + ++A L +V I G HG TF NPLA AV++AS++++ +
Sbjct: 301 VGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQD 360
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
R L L L + P V +VR G +E D+ PV +R
Sbjct: 361 WRTRITELAAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---PVDLAVATPAALDR 415
Query: 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 443
G+ +P + +V PP + E+ + + A+ +V L
Sbjct: 416 GVWLRPFRN-LVYAMPPYICTPAEITQITSAMVEVARL 452
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 198/409 (48%), Gaps = 31/409 (7%)
Query: 56 PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSRA 113
P+P+ A+G + +G + +D +S++ A G+ HP++ A++ Q + ++ +
Sbjct: 23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82
Query: 114 FYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ +L +M + V ++G+ VE A+K+A + Y + K + +
Sbjct: 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTF 140
Query: 172 CCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFK 219
G +HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 141 RNG-YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 220 ESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAV 333
+ E+ PD++ LGKAL GG + +SA L +EV I GE HG TF GNPLA A
Sbjct: 260 CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393
A ASL ++ ++ A + +LR+ L + V +VR G VE T PV
Sbjct: 320 ANASLAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVE---TTHPV 374
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ + E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 375 NMAALQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 197/409 (48%), Gaps = 31/409 (7%)
Query: 56 PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSRA 113
P+P+ A+G + +G + +D +S++ A G+ HP++ A++ Q + ++ +
Sbjct: 23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82
Query: 114 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ +L +M + V ++G+ VE A+K+A + Y + K + +
Sbjct: 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTF 140
Query: 172 CCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFK 219
G FHG T A+S+ DN + LP +L + D D+ ++
Sbjct: 141 RNG-FHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 220 ESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAV 333
+ E+ PD++ LG AL GG + +SA L +EV I GE HG TF GNPLA A
Sbjct: 260 CEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393
A ASL ++ ++ A + +LR+ L + V +VR G VE T PV
Sbjct: 320 ANASLAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVE---TTHPV 374
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ + E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 375 NMAALQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 196/409 (47%), Gaps = 31/409 (7%)
Query: 56 PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF 114
P+P+ A+G + +G + +D +S++ A G+ HP++ A++ Q + ++
Sbjct: 23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGE 82
Query: 115 YNDKFPV-FAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ +L +M + V ++G+ VE A+K+A + Y K + +
Sbjct: 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ--YWDAKGEARDRFLTF 140
Query: 172 CCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFK 219
G +HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 141 RNG-YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 220 ESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAV 333
+ E+ PD++ LGKAL GG + +SA L +EV I GE HG TF GNPLA A
Sbjct: 260 CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPLACAA 319
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393
A ASL ++ ++ A + +LR+ L + V +VR G VE T PV
Sbjct: 320 ANASLAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVE---TTHPV 374
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ + E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 375 NMAALQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 197/409 (48%), Gaps = 31/409 (7%)
Query: 56 PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSRA 113
P+P+ A+G + +G + +D +S++ A G+ HP++ A++ Q + ++ +
Sbjct: 23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82
Query: 114 FYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ +L +M + V ++G+ VE A+K+A + Y + K + +
Sbjct: 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTF 140
Query: 172 CCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFK 219
G +HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 141 RNG-YHGNTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 220 ESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAV 333
+ E+ PD++ LG AL GG + +SA L +EV I GE HG TF GNPLA A
Sbjct: 260 CEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393
A ASL ++ ++ A + +LR+ L + V +VR G VE T PV
Sbjct: 320 ANASLAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVE---TTHPV 374
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ + E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 375 NMAALQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 197/409 (48%), Gaps = 31/409 (7%)
Query: 56 PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSRA 113
P+P+ A+G + +G + +D +S++ A G+ HP++ A++ Q + ++ +
Sbjct: 23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82
Query: 114 FYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ +L +M + V ++G+ VE A+K+A + Y + K + +
Sbjct: 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTF 140
Query: 172 CCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFK 219
G +HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 141 RNG-YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 220 ESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAV 333
+ E+ PD++ LGKAL GG + +SA L +EV I GE HG TF GNPLA A
Sbjct: 260 CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393
A ASL ++ ++ A + +LR+ L + V +VR G VE T PV
Sbjct: 320 ANASLAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVE---TTHPV 374
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ + E+G+ P ++ L PP I +LQ + A++ ++
Sbjct: 375 NMAALQKFFVEQGVWIAP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 197/409 (48%), Gaps = 31/409 (7%)
Query: 56 PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSRA 113
P+P+ A+G + +G + +D +S++ A G+ HP++ A++ Q + ++ +
Sbjct: 23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82
Query: 114 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ +L +M + V ++G+ VE A+K+A + Y + K + +
Sbjct: 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTF 140
Query: 172 CCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFK 219
G +HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 141 RNG-YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 220 ESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAV 333
+ E+ PD++ LG AL GG + +SA L +EV I GE HG TF GNPLA A
Sbjct: 260 CEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393
A ASL ++ ++ A + +LR+ L + V +VR G VE T PV
Sbjct: 320 ANASLAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVE---TTHPV 374
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ + E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 375 NMAALQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 153/294 (52%), Gaps = 27/294 (9%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFY 115
PI + KGS I+D +GN+Y+D++ ++ + GH + +++++L++ AE T +
Sbjct: 44 PIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVESLKKVAEYGTSFGAPTEVE 103
Query: 116 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 175
N+ + +R+ S+ ++V +++G E +AL+LAR GY + I+ GC
Sbjct: 104 NELAKLVIDRVPSV---EIVRMVSSGTEATMSALRLAR--GYTGRN------KILKFEGC 152
Query: 176 FHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAG 227
+HG + + + A G P PG + V + D+ +++ F++ G+ IAG
Sbjct: 153 YHGHGDSLLIKAGSGVATLGL-PDSPGVPEGIAKNTITVPYNDLESVKLAFQQFGEDIAG 211
Query: 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD 287
+ EP+ G GV+ P +G+L+ +RD+ +Y L+I DE+ +G R A + V PD
Sbjct: 212 VIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGYFGVTPD 270
Query: 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASL 338
+ LGK +GGG +PV A E+M I P T GNPLA + +L
Sbjct: 271 LTCLGKVIGGG-LPVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETL 323
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 153/306 (50%), Gaps = 35/306 (11%)
Query: 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY 115
P P + +G+ ++ +G + +D + AY + GH HP++++A++E L+ Y
Sbjct: 37 PYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEE-----ALARGWLY 91
Query: 116 NDKFPVFAERLTS--MFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 169
P AE L + + GY M+ +N+G E TA++LAR GY + +I
Sbjct: 92 GA--PGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLAR--GYTGRD------LI 141
Query: 170 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKES 221
+ GC+HG A + + A G P G L + D+ ALE++F E
Sbjct: 142 LKFDGCYHGSHDAVLVAAGSAAAHYGV-PTSAGVPEAVARLTLVTPYNDVEALERVFAEY 200
Query: 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 281
GD+IAG + EP+ AGVI P +L A++ L + L+I DE+ +G R G A +
Sbjct: 201 GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGY 259
Query: 282 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASL 338
+ D+++LGK +GGG PV AV +EVM + P + TF +P+ A +A+L
Sbjct: 260 FNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATL 318
Query: 339 DVIRDE 344
+ +E
Sbjct: 319 KALEEE 324
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 183/398 (45%), Gaps = 37/398 (9%)
Query: 69 IWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTS 128
I D + + LD +S++ GH HP + +AL Q L + + + A RL
Sbjct: 49 IRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQ---LRVMNHVMFGGLTHEPAARLAK 105
Query: 129 MF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA 182
+ G D V ++G+ VE A K+A + Y + + + +++ G +HG T
Sbjct: 106 LLVDITPAGLDTVFFSDSGSVSVEVAAKMALQ--YWRGRGLPGKRRLMTWRGGYHGDTFL 163
Query: 183 AISMSCDNE-----------AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231
A+S+ CD A + F P +P D A E + ++A + E
Sbjct: 164 AMSI-CDPHGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQLAQHAGELAAVVVE 220
Query: 232 PI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI 290
P+ QG G+ YL +RD+C +Y +L+I DEI +G R+G + A+D V PD++
Sbjct: 221 PVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMC 280
Query: 291 LGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASAVAIASLDVIRDEK 345
+GKAL GG + ++A L +V I G G+ TF NPLA AV++AS++++ +
Sbjct: 281 VGKALTGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQD 340
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
R L L L + P V +VR G +E D+ PV +R
Sbjct: 341 WRTRITELAAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---PVDLAVATPAALDR 395
Query: 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 443
G+ +P + +V PP + E+ + + A+ +V L
Sbjct: 396 GVWLRPFRN-LVYAMPPYICTPAEITQITSAMVEVARL 432
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 183/398 (45%), Gaps = 37/398 (9%)
Query: 69 IWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTS 128
I D + + LD +S++ GH HP + +AL Q L + + + A RL
Sbjct: 74 IRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQ---LRVMNHVMFGGLTHEPAARLAK 130
Query: 129 MF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA 182
+ G D V ++G+ VE A K+A + Y + + + +++ G +HG T
Sbjct: 131 LLVDITPAGLDTVFFSDSGSVSVEVAAKMALQ--YWRGRGLPGKRRLMTWRGGYHGDTFL 188
Query: 183 AISMSCDNE-----------AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231
A+S+ CD A + F P +P D A E + ++A + E
Sbjct: 189 AMSI-CDPHGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQLAQHAGELAAVVVE 245
Query: 232 PI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI 290
P+ QG G+ YL +RD+C +Y +L+I DEI +G R+G + A+D V PD++
Sbjct: 246 PVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMC 305
Query: 291 LGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASAVAIASLDVIRDEK 345
+GKAL GG + ++A L +V I G G+ TF NPLA AV++AS++++ +
Sbjct: 306 VGKALTGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQD 365
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
R L L L + P V +VR G +E D+ PV +R
Sbjct: 366 WRTRITELAAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---PVDLAVATPAALDR 420
Query: 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 443
G+ +P + +V PP + E+ + + A+ +V L
Sbjct: 421 GVWLRPFRN-LVYAMPPYICTPAEITQITSAMVEVARL 457
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 197/409 (48%), Gaps = 31/409 (7%)
Query: 56 PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSRA 113
P+P+ A+G + +G + +D +S++ A G+ HP++ A++ Q + ++ +
Sbjct: 23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82
Query: 114 FYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ +L +M + V ++G+ VE A+K+A + Y + K + +
Sbjct: 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTF 140
Query: 172 CCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFK 219
G +HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 141 RNG-YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 220 ESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G +G++ A
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATGKLFA 259
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAV 333
+ E+ PD++ LGKAL GG + +SA L +EV I GE HG TF GNPLA A
Sbjct: 260 CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393
A ASL ++ ++ A + +LR+ L + V +VR G VE T PV
Sbjct: 320 ANASLAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVE---TTHPV 374
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ + E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 375 NMAALQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 197/409 (48%), Gaps = 31/409 (7%)
Query: 56 PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSRA 113
P+P+ A+G + +G + +D +S++ A G+ HP++ A++ Q + ++ +
Sbjct: 23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82
Query: 114 FYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ +L +M + V ++G+ VE A+K+A + Y + K + +
Sbjct: 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTF 140
Query: 172 CCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFK 219
G +HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 141 RNG-YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 220 ESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G ++G++ A
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFA 259
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAV 333
+ E+ PD++ LG AL GG + +SA L +EV I GE HG TF GNPLA A
Sbjct: 260 CEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393
A ASL ++ ++ A + +LR+ L + V +VR G VE T PV
Sbjct: 320 ANASLAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVE---TTHPV 374
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ + E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 375 NMAALQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/425 (24%), Positives = 194/425 (45%), Gaps = 46/425 (10%)
Query: 50 SAHNYHPVPI----------VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKA 99
+AH+ HP V ++A+G + D EG + LD ++ VN G+ ++ +
Sbjct: 20 AAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEV 79
Query: 100 LQEQAEKLTLSSRAFYNDKFPV--FAERLTSMFGYDM--VLPMNTGAEGVETALKLARKW 155
Q +L + F P A++L + D+ V G+E +T +++ R
Sbjct: 80 AARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRT- 138
Query: 156 GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS--CDNEAIRGFGP----LLPGHLKVDFG 209
Y + K ++ +I+S +HG T+A+ ++ A G P + + + G
Sbjct: 139 -YWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGG 197
Query: 210 DIT----------ALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258
D+ LE+ E G +++A F+ EP+QG GVI+ PD Y ++ +C KY+
Sbjct: 198 DMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYD 257
Query: 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG 318
IL+IADE+ G R+G + +RP ++ + K L G P+ + EV I
Sbjct: 258 ILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKD 317
Query: 319 E--HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376
E HG T+ G+P+A+AVA+ +L ++ +E + + ++ + ++ P V E +
Sbjct: 318 EFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHP-LVGEAK 376
Query: 377 GRGLFNAVEFDKTALPVSAY-----DICLKMKER----GILAKPTHDTIVRLTPPLSISS 427
G+ ++ + + I +ER ++ + D ++ ++PPL I+
Sbjct: 377 IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMI-ISPPLVITP 435
Query: 428 NELQE 432
E+ E
Sbjct: 436 AEIDE 440
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 27/304 (8%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFY 115
P+ + KGS ++D +GN+Y+D++ ++ + GH + ++++AL+ AE+ T +
Sbjct: 36 PLFXERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIE 95
Query: 116 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 175
N + ER+ S+ ++V +N+G E +AL+LAR GY + I+ GC
Sbjct: 96 NKLAKLVIERVPSI---EIVRXVNSGTEATXSALRLAR--GYTGRN------KILKFIGC 144
Query: 176 FHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAG 227
+HG + + + A G P PG + V + D+ +++ F++ GD IA
Sbjct: 145 YHGHGDSLLIKAGSGVATLGL-PDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIAC 203
Query: 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD 287
+ EP+ G GV+ P G+L+ +R++ + L+I DE+ +G R + V PD
Sbjct: 204 VIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAYNCGQGYYGVTPD 262
Query: 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDVIRDE 344
+ LGK +GGG +PV A E+ + P T GNPLA A +L + E
Sbjct: 263 LTCLGKVIGGG-LPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYETLVQLTPE 321
Query: 345 KLAE 348
E
Sbjct: 322 SYVE 325
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 198/429 (46%), Gaps = 41/429 (9%)
Query: 49 YSAH-NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL 107
Y+A+ N+ P + A+GS + D +G K D LS GH +I +A+ +Q L
Sbjct: 23 YTANRNFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTL 82
Query: 108 TLSSRAFYNDKFPV-FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSI 164
S Y AE++T + + V ++G+E TA+K+ R Y + K
Sbjct: 83 DYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVR--AYWRLKGQA 140
Query: 165 DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG-PL-----LPGHLKVDF---------G 209
+ ++ +HG +A S+ N + FG P+ LP L G
Sbjct: 141 TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG 200
Query: 210 DITALEKIFK----ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265
I +++ K IA EP+ G AGV++PP+GYLK R++C+++NIL++ DE
Sbjct: 201 GIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDE 260
Query: 266 IQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI--QPG----- 318
+ +G R+G M +D V PD++ + K + G IP+ AV+A E+ QP
Sbjct: 261 VITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAV 320
Query: 319 --EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376
HG T+ +P+A A +A+L +++ E L + A + + L I+ V ++R
Sbjct: 321 EFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGA--KNVIDIR 378
Query: 377 GRGLFNAVEF---DKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 433
GL A++ D A+ V ++ + + + G + DT+ + P + +L
Sbjct: 379 NFGLAGAIQIAPRDGDAI-VRPFEAGMALWKAGFYVRFGGDTL-QFGPTFNSKPQDLDRL 436
Query: 434 SKALHDVLE 442
A+ +VL
Sbjct: 437 FDAVGEVLN 445
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/422 (27%), Positives = 177/422 (41%), Gaps = 56/422 (13%)
Query: 61 FSQAKGSSIWDP-EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-----SSRAF 114
+++ GS + D G +YLD + ++ G P ++ + AE + S+
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 115 YNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSIDEAI- 168
Y+ F E + G D LP + GA VE ALK A W + ID A+
Sbjct: 99 YSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALG 157
Query: 169 --IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA------------- 213
++ G FHGR+ +S++ I P K D+ I A
Sbjct: 158 TQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLDEPAMA 211
Query: 214 ---------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264
F+ IA F+ EPIQGE G + A+R+LC +++ L+I D
Sbjct: 212 ALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFD 271
Query: 265 EIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLCIQPGE 319
E+Q+G +G A +V PD+V GK V V+A + V + P
Sbjct: 272 EVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVFAVPSR 326
Query: 320 HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379
ST+GGN A L+VI E L ER+ G+ LR L ++ FP V + RGRG
Sbjct: 327 LNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRG 386
Query: 380 LFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439
L A TA ++ ++ +R ++ P VR PPL++S+ E+ A+
Sbjct: 387 LMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRS 443
Query: 440 VL 441
L
Sbjct: 444 AL 445
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/422 (27%), Positives = 177/422 (41%), Gaps = 56/422 (13%)
Query: 61 FSQAKGSSIWDP-EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-----SSRAF 114
+++ GS + D G +YLD + ++ G P ++ + AE + S+
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 115 YNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSIDEAI- 168
Y+ F E + G D LP + GA VE ALK A W + ID A+
Sbjct: 99 YSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALG 157
Query: 169 --IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA------------- 213
++ G FHGR+ +S++ I P K D+ I A
Sbjct: 158 TQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLDEPAMA 211
Query: 214 ---------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264
F+ IA F+ EPIQGE G + A+R+LC +++ L+I D
Sbjct: 212 ALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFD 271
Query: 265 EIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLCIQPGE 319
E+Q+G +G A +V PD+V GK V V+A + V + P
Sbjct: 272 EVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVFAVPSR 326
Query: 320 HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379
ST+GGN A L+VI E L ER+ G+ LR L ++ FP V + RGRG
Sbjct: 327 LASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRG 386
Query: 380 LFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439
L A TA ++ ++ +R ++ P VR PPL++S+ E+ A+
Sbjct: 387 LMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRS 443
Query: 440 VL 441
L
Sbjct: 444 AL 445
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 177/422 (41%), Gaps = 56/422 (13%)
Query: 61 FSQAKGSSIWDP-EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-----SSRAF 114
+++ GS + D G +YLD + ++ G P ++ + AE + S+
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 115 YNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSIDEAI- 168
Y+ F E + G D LP + GA VE ALK A W + ID A+
Sbjct: 99 YSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALG 157
Query: 169 --IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA------------- 213
++ G FHGR+ +S++ I P K D+ I A
Sbjct: 158 TQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLDEPAMA 211
Query: 214 ---------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264
F+ IA F+ EPIQGE G + A+R+LC +++ L+I D
Sbjct: 212 ALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFD 271
Query: 265 EIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLCIQPGE 319
E+Q+G +G A +V PD+V GK V V+A + V + P
Sbjct: 272 EVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVFAVPSR 326
Query: 320 HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379
S++GGN A L+VI E L ER+ G+ LR L ++ FP V + RGRG
Sbjct: 327 LNSSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRG 386
Query: 380 LFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439
L A TA ++ ++ +R ++ P VR PPL++S+ E+ A+
Sbjct: 387 LMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRS 443
Query: 440 VL 441
L
Sbjct: 444 AL 445
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 176/422 (41%), Gaps = 56/422 (13%)
Query: 61 FSQAKGSSIWDP-EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-----SSRAF 114
+++ GS + D G +YLD + ++ G P ++ + AE + S+
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 115 YNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSIDEAI- 168
Y+ F E + G D LP + GA VE ALK A W + ID A+
Sbjct: 99 YSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALG 157
Query: 169 --IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA------------- 213
++ G FHGR+ +S++ I P K D+ I A
Sbjct: 158 TQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLDEPAMA 211
Query: 214 ---------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264
F+ IA F+ EPIQG G + A+R+LC +++ L+I D
Sbjct: 212 ALEAEALRQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFD 271
Query: 265 EIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLCIQPGE 319
E+Q+G +G A +V PD+V GK V V+A + V + P
Sbjct: 272 EVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVFAVPSR 326
Query: 320 HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379
ST+GGN A L+VI E L ER+ G+ LR L ++ FP V + RGRG
Sbjct: 327 LNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRG 386
Query: 380 LFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439
L A TA ++ ++ +R ++ P VR PPL++S+ E+ A+
Sbjct: 387 LMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRS 443
Query: 440 VL 441
L
Sbjct: 444 AL 445
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 154/342 (45%), Gaps = 32/342 (9%)
Query: 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK-LTLSSRAFY 115
+P+ +A G+ ++D +G Y+D++ ++ GH HP I +A+ E E+ L+ +
Sbjct: 35 IPLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQAVIEAVERGLSFGAPTEX 94
Query: 116 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 175
K L D V +N+G E +A++LAR GY + I+ GC
Sbjct: 95 EVKXAQLVTDLVPT--XDXVRXVNSGTEATXSAIRLAR--GYTGRD------KIIKFEGC 144
Query: 176 FHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAG 227
+HG + + + A+ P PG L + D+ ++ + F++ ++A
Sbjct: 145 YHGHA-DCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVAC 203
Query: 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD 287
+ EP+ G I P +L +R LC ++ L+I DE+ +G R A D+ V PD
Sbjct: 204 IIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQDYYHVIPD 262
Query: 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRD- 343
+ LGK +GGG PV A +EV + P T GNP+A A A L I
Sbjct: 263 LTCLGKIIGGGX-PVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTEISQV 321
Query: 344 ---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLF 381
E L E + L LR H K ++ P V V G GLF
Sbjct: 322 GVYETLTELTDSLATGLR-HAAK-EENIPLVVNHVGGXFGLF 361
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 113/436 (25%), Positives = 183/436 (41%), Gaps = 67/436 (15%)
Query: 52 HNYHPVPIVFSQAKGSS------------IWDPEGNKYLDFLSAYSAVNQGHCHPKIMKA 99
H +HP + A+G S +WD G K +D + VN G+ KI A
Sbjct: 16 HFFHPSTHXGTHARGESPTRIXAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADA 75
Query: 100 LQEQAEKLTLSSRAFYNDKFPVFAERLTSMF---------GYDMVLPMNTGAEGVETALK 150
+ QA+ L A+Y+ E ++ G V +G++ ET +K
Sbjct: 76 IATQAKNL-----AYYHAYVGHGTEASITLAKXIIDRAPKGXSRVYFGLSGSDANETNIK 130
Query: 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF----GPLLPGHLKV 206
L W Y ++ I+S +HG + S++ + F P+L
Sbjct: 131 LI--WYYNNVLGRPEKKKIISRWRGYHGSGVXTGSLTGLDLFHNAFDLPRAPVLHTEAPY 188
Query: 207 DF--GDITALEK-------------IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251
F D + E+ I E + IA F+ EPI G G++ PP GY + ++
Sbjct: 189 YFRRTDRSXSEEQFSQHCADKLEEXILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQ 248
Query: 252 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV-ILGKALGGGVIPVSAVL-ADK 309
+ KY++L++ADE+ +G R G SD ++PD++ I K L P+S V+ AD+
Sbjct: 249 AVLKKYDVLLVADEVVTGFGRLGTXFGSDHYGIKPDLITIAXKGLTSAYAPLSGVIVADR 308
Query: 310 EVMLCIQPGE------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFK 363
+ +Q + HG T+ +P+ A +A+L++I + L + G R L K
Sbjct: 309 VWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEXDLVTNAGETGAYFRAELAK 368
Query: 364 IQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVSAY---DICLKMKERGIL--AKPTH 413
N V EVRG G AVEF D+ S + + G++ A P
Sbjct: 369 AVGGHKN-VGEVRGDGXLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAXPQG 427
Query: 414 DTIVRLTPPLSISSNE 429
D I+ PPL ++ +
Sbjct: 428 D-ILGFAPPLCLTREQ 442
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/422 (25%), Positives = 185/422 (43%), Gaps = 60/422 (14%)
Query: 60 VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF 119
V A G I D +G K LD + VN G+ +I +A+ +QA +L A+Y+
Sbjct: 35 VIKTASGVFIEDRDGTKLLDAFAGLYCVNVGYGRQEIAEAIADQAREL-----AYYHSYV 89
Query: 120 PVFAERLTSMFGYDM-VLPMNT--------GAEGVETALKLARKWGYVKKKFSIDEAIIV 170
E ++ + P N G++ ET +KL W Y ++ I+
Sbjct: 90 GHGTEASITLAKXILDRAPKNXSKVYFGLGGSDANETNVKLI--WYYNNILGRPEKKKII 147
Query: 171 SCCGCFHGRTLAAISMSCDNEAIRGFG-PL-------LPGHLKVDFGDITALEKIF---- 218
S +HG L S++ + F P+ P + + + D+ E+ F
Sbjct: 148 SRWRGYHGSGLVTGSLTGLELFHKKFDLPVEQVIHTEAPYYFRRE--DLNQTEEQFVAHC 205
Query: 219 ---------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269
+E D IA F+ EPI G G++ PP GY +A++ + +K++IL++ADE+ +G
Sbjct: 206 VAELEALIEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTG 265
Query: 270 LARSGRMLASDWEEVRPDMV-ILGKALGGGVIPVSAVLADKEVMLCIQPGE-------HG 321
R G SD + PD++ I K L P+S + +V ++ G HG
Sbjct: 266 FGRLGTXFGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHG 325
Query: 322 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381
T+ +P+ +A +A+L ++ + L + +G L + Q N V +VRG GL
Sbjct: 326 WTYSAHPIGAAAGVANLKLLDELNLVSNAGEVGAYLNATXAEALSQHAN-VGDVRGEGLL 384
Query: 382 NAVEFDKTALPVSAYDICLK---------MKERGILAK--PTHDTIVRLTPPLSISSNEL 430
AVEF K + +D K +++ I+A+ P D I+ PP ++ E
Sbjct: 385 CAVEFVKDRDSRTFFDAADKIGPQISAKLLEQDKIIARAXPQGD-ILGFAPPFCLTRAEA 443
Query: 431 QE 432
+
Sbjct: 444 DQ 445
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 189/404 (46%), Gaps = 45/404 (11%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYN 116
P+ S +G+ + + G + +D A+ A + G+ HP I+ A+ A ++ + N
Sbjct: 39 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 117 DKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173
AERL + F G + ++G++ E A + K + + +++
Sbjct: 99 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVK--------ATGRSGVIAFA 150
Query: 174 GCFHGRTLAAISMS---CDNEAIRGFGPLL---PGHLKVDFGDITA-------LEKIFKE 220
G +HG T+ +++ S +A + G +L P + D T EK+
Sbjct: 151 GAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAV 210
Query: 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 280
I EPIQ + G+I+PPDG+L+ D+C + IL++ DE++ GLARSGR+ +
Sbjct: 211 PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFE 270
Query: 281 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 340
E PD +++ GG +P+SAV+A E++ C T GNP+++A +A L+
Sbjct: 271 HEGFVPD-ILVLGKGLGGGLPLSAVIAPAEILDCASAFAM-QTLHGNPISAAAGLAVLET 328
Query: 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------------DK 388
I + L + G LR L ++ ++ P + ++RGRGL +E +
Sbjct: 329 IDRDDLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREPARAET 387
Query: 389 TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432
L AY + L + G+ + ++ TPPL+I+ ++ +
Sbjct: 388 AKLIYRAYQLGLVVYYVGM-----NGNVLEFTPPLTITETDIHK 426
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 189/404 (46%), Gaps = 45/404 (11%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYN 116
P+ S +G+ + + G + +D A+ A + G+ HP I+ A+ A ++ + N
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 117 DKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173
AERL + F G + ++G++ E A + K + + +++
Sbjct: 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVK--------ATGRSGVIAFA 137
Query: 174 GCFHGRTLAAISMS---CDNEAIRGFGPLL---PGHLKVDFGDITA-------LEKIFKE 220
G +HG T+ +++ S +A + G +L P + D T EK+
Sbjct: 138 GAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAV 197
Query: 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 280
I EPIQ + G+I+PPDG+L+ D+C + IL++ DE++ GLARSGR+ +
Sbjct: 198 PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFE 257
Query: 281 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 340
E PD +++ GG +P+SAV+A E++ C T GNP+++A +A L+
Sbjct: 258 HEGFVPD-ILVLGKGLGGGLPLSAVIAPAEILDCASAFAM-QTLHGNPISAAAGLAVLET 315
Query: 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------------DK 388
I + L + G LR L ++ ++ P + ++RGRGL +E +
Sbjct: 316 IDRDDLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREPARAET 374
Query: 389 TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432
L AY + L + G+ + ++ TPPL+I+ ++ +
Sbjct: 375 AKLIYRAYQLGLVVYYVGM-----NGNVLEFTPPLTITETDIHK 413
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/413 (27%), Positives = 188/413 (45%), Gaps = 49/413 (11%)
Query: 60 VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF 119
V + A+G + +G + +D + G+ +I+ A+ QA L +S +Y
Sbjct: 39 VLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYAS-PWYMATS 97
Query: 120 PV--FAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 175
P AE++ ++ D+ + G+ V++AL+ + + V + + IIV G
Sbjct: 98 PAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQ-KKRIIVRYDG- 155
Query: 176 FHGRTLAAISMSCD------------NEAIRGFGPLLPGHL----KVDFGD--ITALEKI 217
+HG T A++ +C + I P H + F D + E
Sbjct: 156 YHGST--ALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDR 213
Query: 218 FKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276
+ G D IA FL EPI GVIIPP GY + +C K++IL I+DE+ +G R G
Sbjct: 214 IESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEW 273
Query: 277 LASDWE-EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--------HGSTFGGN 327
AS+ V PD++ K + G +P+ LA E +L GE +G T+
Sbjct: 274 FASEKVFGVVPDIITFAKGVTSGYVPLGG-LAISEAVLARISGENAKGSWFTNGYTYSNQ 332
Query: 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE-- 385
P+A A A+A+++++ E + +++ + + L + + P V E R GL V+
Sbjct: 333 PVACAAALANIELMEREGIVDQAREMADYFAAALASL-RDLPG-VAETRSVGLVGCVQCL 390
Query: 386 FDKTALPVSAYD--ICLKMKER----GILAKPTHDTIVRLTPPLSISSNELQE 432
D T +A D LK+ ER G++ +P D V ++PPL IS ++ E
Sbjct: 391 LDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCV-ISPPLIISRAQIDE 442
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 102/431 (23%), Positives = 178/431 (41%), Gaps = 61/431 (14%)
Query: 61 FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFP 120
+ +++G+ + D +GN+ LD S S++ G+ HP ++K +Q+ T +R P
Sbjct: 49 YEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPP 108
Query: 121 V-FAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKK----FSIDEA-- 167
F E+L G ++ M G+ E A K W K++ FS +E
Sbjct: 109 ENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELET 168
Query: 168 ------------IIVSCCGCFHGRTLAAISMSCDNEAIRGFG------PLLP-GHLKVDF 208
I+S G FHGRT+ ++ + ++AI P+ P LK
Sbjct: 169 CMINQAPGCPDYSILSFMGAFHGRTMGCLA-TTHSKAIHKIDIPSFDWPIAPFPRLKYPL 227
Query: 209 GDIT---------ALEKI------FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253
+ LE++ +++ +AG + EPIQ E G D + + +RD+
Sbjct: 228 EEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDI 287
Query: 254 CSKYNILMIADEIQSGLARSGRMLASD-WEEVRPD--MVILGKALGGGVIPVSAVLADKE 310
K+ + DE+Q+G +G+ A + W P M K + GG KE
Sbjct: 288 SRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF-------HKE 340
Query: 311 VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPN 370
P +T+ G+P + + +++I+ E L +AH G+ L L +Q ++P
Sbjct: 341 EFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQ 400
Query: 371 YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNEL 430
++ VRGRG F FD + I + + +G++ D +R P L +
Sbjct: 401 FISRVRGRGTF--CSFDTPDESIRNKLISIA-RNKGVMLGGCGDKSIRFRPTLVFRDHHA 457
Query: 431 QEGSKALHDVL 441
D+L
Sbjct: 458 HLFLNIFSDIL 468
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 154/378 (40%), Gaps = 45/378 (11%)
Query: 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQ-AEKLTLSSR 112
+ P P+V +Q GS D +G+ Y++FL Y+A GH HP I A++ A L LS++
Sbjct: 79 HRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQ 138
Query: 113 AFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ +FAE + F D+V N+G E AL A K + D
Sbjct: 139 ---TENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFD------ 189
Query: 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD-FGDITALEKIFKESGDQIAGFLF 230
G +HG L S A P H+ + + D+ + K G A L
Sbjct: 190 --GGYHGGLLNFASGHAPTNA--------PYHVVLGVYNDVEGTADLLKRHGHDCAAILV 239
Query: 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI 290
EP+ G G + +L +R S+ L+I DE+ + G A + + D+
Sbjct: 240 EPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGG--AQEMLGISADLTT 297
Query: 291 LGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEK 345
LGK +GGG + A +++M P H TF N L + A+L I +
Sbjct: 298 LGKYIGGG-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQ 356
Query: 346 LAERSAHLGEELRQHLFKI--QQQFPNYVKEVRGRGLFNAVEFD----KTALPVSAYDIC 399
A + G+ R +L +I + Q P + G G + F ++A V A D
Sbjct: 357 AASDLSASGDRFRANLNRIAVENQAP---LQFTGLGSLGTIHFSRAPIRSAGDVRAADQQ 413
Query: 400 LK------MKERGILAKP 411
LK M +GI P
Sbjct: 414 LKELFFFHMLRKGIYLAP 431
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 139/321 (43%), Gaps = 41/321 (12%)
Query: 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE-KLTLSSR 112
Y P P+ ++ +G+++WD +G++Y DF++ Y+A GH P+I A+ E + + L+
Sbjct: 66 YAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGH 125
Query: 113 AFYNDKFP-VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ + ER + + + N+G E AL A + +K IV
Sbjct: 126 NLLEGRLARLICERFPQI---EQLRFTNSGTEANLMALTAALHFTGRRK--------IVV 174
Query: 172 CCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGHLKVDF-----GDITALEKIFKESGDQI 225
G +HG L GFG P + DF D + G +I
Sbjct: 175 FSGGYHGGVL-------------GFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEI 221
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI-QSGLARSGRMLASDWEEV 284
A L EP+QG +G I +L+A+R+ ++ L++ DE+ S LA G LA+ +
Sbjct: 222 AVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHG--LANKL-GI 278
Query: 285 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE----HGSTFGGNPLASAVAIASLDV 340
R D+ LGK +GGG + A +VM P H TF N + A A L
Sbjct: 279 RSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTK 337
Query: 341 IRDEKLAERSAHLGEELRQHL 361
+ + A A GE LR L
Sbjct: 338 LFTPEAAGALAERGEALRARL 358
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 147/324 (45%), Gaps = 29/324 (8%)
Query: 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113
+ P + S A+G D +GN YLDF + A+ GH HP++ A+ E LS
Sbjct: 36 FDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAE-----ALSHGV 90
Query: 114 FYNDKFPV---FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV 170
Y P+ +AER+ + F + + G ET L R V + F+ +I+
Sbjct: 91 QYAASHPLEVRWAERIVAAF--PSIRKLRFTGSGTETTLLALR----VARAFT-GRRMIL 143
Query: 171 SCCGCFHGR---TLAAISMSCDNEAIRGFGPLLPGH-LKVDFGDITALEKIFKESGDQIA 226
G +HG + + + D + G P + L + DI + ++F G IA
Sbjct: 144 RFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIA 203
Query: 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 286
F+ EP+ GV D +L+ +L +Y L I DE+ SG R G +V+P
Sbjct: 204 AFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQP 262
Query: 287 DMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVI 341
D+ L KA G +P + ++VM + G H TF GNP+ +A AIA++D I
Sbjct: 263 DLTCLAKA-SAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTI 321
Query: 342 RDEKLAERSAHLGEELRQ---HLF 362
++ + + LG+ R+ HLF
Sbjct: 322 LEDDVCAKINDLGQFAREAMNHLF 345
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 17/215 (7%)
Query: 224 QIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 282
+ + EP I G G+ + + + + + C I +I DE+ +G R G ++
Sbjct: 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 283 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIA 336
+PD+ K L GG++P++ LA V HG ++ + + A A
Sbjct: 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAK 713
Query: 337 SLDVIRDEKLAERSAHLGEELRQHLF--KIQQQFPNY--VKEVRGRGLFNAVEFDKTA-- 390
++ +D + G+ LR+ L+ ++ QQ ++ V+ V G A+E A
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRE-LWDEELVQQISSHSAVQRVVVIGTLFALELKADASN 772
Query: 391 ---LPVSAYDICLKMKERGILAKPTHDTIVRLTPP 422
+ A + + ++E GI +P + I + P
Sbjct: 773 SGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGP 807
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 17/209 (8%)
Query: 224 QIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 282
+ + EP I G G + + + + C I +I DE+ +G R G ++
Sbjct: 594 HVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 283 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIA 336
+PD+ K L GG +P++ LA V HG ++ + A A
Sbjct: 654 GCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGCATAAK 713
Query: 337 SLDVIRDEKLAERSAHLGEELRQHLF--KIQQQFPNY--VKEVRGRGLFNAVEFDKTA-- 390
++ +D + G+ LR+ L+ ++ QQ ++ V+ V G A+E A
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRE-LWDEELVQQISSHSAVQRVVVIGTLFALELKADASN 772
Query: 391 ---LPVSAYDICLKMKERGILAKPTHDTI 416
+ A + + ++E GI +P + I
Sbjct: 773 SGYASLYAKSLLIXLREDGIFTRPLGNVI 801
>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2IY5|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
pdb|3HFZ|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 350
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 50 SAHNYHPVPIVFSQAKGS-SIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108
S + PV F + ++W PEG K+L+ A G HPK+ +A+ E+L
Sbjct: 249 SKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGA------GMVHPKVFQAVDAYRERLG 302
Query: 109 L--SSRAFYNDKFPVFAERLTSM 129
L + R F + ERL +
Sbjct: 303 LPPAYRGVTGFAFGLGVERLAML 325
>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|A Chain A, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|A Chain A, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
Length = 266
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 53 NYHPVPIVFSQAKGS-SIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-- 109
+ PV F + ++W PEG K+L+ A G HPK+ +A+ E+L L
Sbjct: 168 RFQPVYFPFVEPGAQFAVWWPEGGKWLELGGA------GMVHPKVFQAVDAYRERLGLPP 221
Query: 110 SSRAFYNDKFPVFAERLTSM 129
+ R F + ERL +
Sbjct: 222 AYRGVTGFAFGLGVERLAML 241
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 247 LKAVRDLCSKYNILMIADEIQSGL 270
L + LC+KYN++++ADEI S +
Sbjct: 178 LTKLGSLCTKYNVIVVADEIHSDI 201
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 382 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432
N V L V+A+ ++ G+LA DT +RL +S N+++E
Sbjct: 284 NXVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEE 334
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 382 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432
N V L V+A+ ++ G+LA DT +RL +S N+++E
Sbjct: 292 NMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEE 342
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 362
S V+ D++ I+ G + A +A+ +I K+ +R E R
Sbjct: 211 SVVVGDRDF---IERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLAL 267
Query: 363 KIQQ----QFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVR 418
K+++ P VK N V L V+A+ ++ G+LA DT +R
Sbjct: 268 KLKEIGYSVNPEDVKT-------NMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIR 320
Query: 419 LTPPLSISSNELQE 432
L +S N+++E
Sbjct: 321 LVTHKDVSRNDIEE 334
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 270 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG------EHGST 323
+ R L S WE +RP + L G++P L K+ L IQ G G
Sbjct: 326 IKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKD--LVIQAGGGVMGHPDGPR 383
Query: 324 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 359
G L A+ A V DEK A+ S L + LR+
Sbjct: 384 AGAKALRDAIDAAIEGVDLDEK-AKSSPELKKSLRE 418
>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans
pdb|3L8A|B Chain B, Crystal Structure Of Metc From Streptococcus Mutans
Length = 421
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 189 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 248
D+ + ++ G ++DF LEK ++ +I +L G + D +K
Sbjct: 164 DHRLVENSLQIINGRFEIDF---EQLEKDIIDNNVKI--YLLCSPHNPGGRVWDNDDLIK 218
Query: 249 AVRDLCSKYNILMIADEIQSGLARSG 274
+ +LC K+ +++++DEI LA G
Sbjct: 219 -IAELCKKHGVILVSDEIHQDLALFG 243
>pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase
From Arabidopsis Thaliana In Complex With Coformycin
5'-Phosphate
Length = 701
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 410 KPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 443
+P +T VRL PL + +++ E K L + LEL
Sbjct: 86 EPEQETFVRLNVPLEVPTSDEVEAYKCLQECLEL 119
>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
pdb|3DZZ|B Chain B, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
Length = 391
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 247 LKAVRDLCSKYNILMIADEIQSGL 270
+K + +LC+K+ +L+I+DEI L
Sbjct: 182 VKRIAELCAKHQVLLISDEIHGDL 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,905,602
Number of Sequences: 62578
Number of extensions: 572761
Number of successful extensions: 1684
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 94
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)