Query 012138
Match_columns 470
No_of_seqs 314 out of 2715
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 03:31:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atq_A 4-aminobutyrate transam 100.0 4E-70 1.4E-74 550.7 45.2 402 32-442 20-453 (456)
2 4e3q_A Pyruvate transaminase; 100.0 2E-68 7E-73 540.1 43.5 400 39-445 24-468 (473)
3 4ao9_A Beta-phenylalanine amin 100.0 5.4E-65 1.8E-69 510.8 41.6 386 36-447 41-448 (454)
4 3i5t_A Aminotransferase; pyrid 100.0 3.9E-61 1.3E-65 492.4 43.1 402 39-447 11-456 (476)
5 3tfu_A Adenosylmethionine-8-am 100.0 1.6E-61 5.4E-66 492.8 39.7 401 37-446 28-454 (457)
6 3hmu_A Aminotransferase, class 100.0 3.3E-61 1.1E-65 492.1 40.5 403 37-446 10-453 (472)
7 2oat_A Ornithine aminotransfer 100.0 3.6E-60 1.2E-64 480.9 46.3 403 34-444 35-438 (439)
8 1z7d_A Ornithine aminotransfer 100.0 3.8E-60 1.3E-64 480.1 44.0 403 37-446 27-430 (433)
9 3oks_A 4-aminobutyrate transam 100.0 3.6E-60 1.2E-64 482.7 43.1 401 32-442 17-449 (451)
10 4ffc_A 4-aminobutyrate aminotr 100.0 5.3E-60 1.8E-64 481.6 43.5 401 33-446 21-450 (453)
11 3gju_A Putative aminotransfera 100.0 1.8E-58 6.3E-63 471.6 42.5 403 40-446 7-457 (460)
12 3dod_A Adenosylmethionine-8-am 100.0 1.2E-58 4.2E-63 471.4 40.6 403 40-448 3-446 (448)
13 3n5m_A Adenosylmethionine-8-am 100.0 9E-58 3.1E-62 465.6 44.2 401 38-444 8-451 (452)
14 4a6r_A Omega transaminase; tra 100.0 1.3E-58 4.5E-63 472.5 37.6 402 39-446 7-450 (459)
15 3nx3_A Acoat, acetylornithine 100.0 3.5E-57 1.2E-61 453.2 40.7 387 45-442 6-393 (395)
16 4a0g_A Adenosylmethionine-8-am 100.0 8.9E-59 3E-63 498.8 27.5 400 43-446 335-829 (831)
17 2pb2_A Acetylornithine/succiny 100.0 6.8E-57 2.3E-61 454.6 37.7 398 39-445 21-418 (420)
18 3l44_A Glutamate-1-semialdehyd 100.0 1.8E-55 6.2E-60 446.3 42.3 395 36-446 5-431 (434)
19 3ruy_A Ornithine aminotransfer 100.0 2.7E-55 9.4E-60 439.0 41.0 390 41-442 2-392 (392)
20 3i4j_A Aminotransferase, class 100.0 3.8E-55 1.3E-59 443.5 40.1 392 49-445 3-428 (430)
21 3dxv_A Alpha-amino-epsilon-cap 100.0 4.7E-55 1.6E-59 443.9 39.6 397 39-447 6-427 (439)
22 3k28_A Glutamate-1-semialdehyd 100.0 1E-54 3.4E-59 440.2 41.1 393 37-446 5-428 (429)
23 3fq8_A Glutamate-1-semialdehyd 100.0 4.3E-54 1.5E-58 435.3 43.3 391 37-442 4-425 (427)
24 4e77_A Glutamate-1-semialdehyd 100.0 3.1E-54 1.1E-58 436.6 42.2 390 38-442 6-427 (429)
25 2cjg_A L-lysine-epsilon aminot 100.0 6.9E-55 2.4E-59 443.5 36.0 399 38-445 16-448 (449)
26 1ohv_A 4-aminobutyrate aminotr 100.0 3.3E-54 1.1E-58 440.6 36.2 399 35-445 23-471 (472)
27 1zod_A DGD, 2,2-dialkylglycine 100.0 2.9E-53 1E-57 429.9 41.1 396 38-445 5-432 (433)
28 2yky_A Beta-transaminase; tran 100.0 2.2E-58 7.4E-63 466.3 0.0 386 36-447 54-462 (465)
29 2epj_A Glutamate-1-semialdehyd 100.0 9.7E-53 3.3E-57 426.3 39.7 394 36-445 9-431 (434)
30 4adb_A Succinylornithine trans 100.0 1.3E-51 4.3E-56 414.2 40.6 392 46-447 10-402 (406)
31 3a8u_X Omega-amino acid--pyruv 100.0 3.9E-52 1.3E-56 423.7 37.0 382 57-445 32-447 (449)
32 2eo5_A 419AA long hypothetical 100.0 2E-51 7E-56 414.6 39.0 382 39-445 3-418 (419)
33 1s0a_A Adenosylmethionine-8-am 100.0 8.1E-51 2.8E-55 411.5 43.0 393 43-446 6-425 (429)
34 2e7u_A Glutamate-1-semialdehyd 100.0 3.6E-51 1.2E-55 413.5 40.3 389 37-441 4-424 (424)
35 2cy8_A D-phgat, D-phenylglycin 100.0 6.3E-51 2.2E-55 415.2 38.1 391 37-447 12-437 (453)
36 2ord_A Acoat, acetylornithine 100.0 1.2E-49 4.2E-54 398.7 38.7 380 52-444 17-396 (397)
37 1sff_A 4-aminobutyrate aminotr 100.0 3.4E-49 1.2E-53 399.1 42.1 398 38-446 3-425 (426)
38 1vef_A Acetylornithine/acetyl- 100.0 8.7E-49 3E-53 392.2 36.0 384 39-442 6-395 (395)
39 2eh6_A Acoat, acetylornithine 100.0 1.9E-46 6.5E-51 372.5 38.0 371 51-441 4-375 (375)
40 2w8t_A SPT, serine palmitoyltr 100.0 2.1E-39 7.1E-44 327.6 33.7 365 38-447 26-417 (427)
41 3l8a_A METC, putative aminotra 100.0 1.1E-40 3.8E-45 336.4 24.2 357 53-442 37-420 (421)
42 3tqx_A 2-amino-3-ketobutyrate 100.0 1.3E-37 4.4E-42 311.3 30.6 351 52-446 21-397 (399)
43 1fc4_A 2-amino-3-ketobutyrate 100.0 1.2E-36 4E-41 304.8 30.6 351 53-446 23-398 (401)
44 3dzz_A Putative pyridoxal 5'-p 100.0 5.1E-37 1.7E-41 306.1 25.6 355 59-446 11-390 (391)
45 3fdb_A Beta C-S lyase, putativ 100.0 7.9E-37 2.7E-41 303.3 22.2 343 61-445 9-376 (377)
46 3kax_A Aminotransferase, class 100.0 5.1E-36 1.7E-40 298.0 25.3 352 58-442 6-383 (383)
47 3a2b_A Serine palmitoyltransfe 100.0 1.8E-35 6.2E-40 295.9 28.4 346 56-446 25-393 (398)
48 1bs0_A Protein (8-amino-7-oxon 100.0 4.3E-35 1.5E-39 291.6 29.6 349 48-440 13-383 (384)
49 3kki_A CAI-1 autoinducer synth 100.0 8.6E-36 2.9E-40 299.4 24.2 337 62-445 46-404 (409)
50 4dq6_A Putative pyridoxal phos 100.0 7.5E-36 2.6E-40 297.6 21.3 351 58-442 10-391 (391)
51 1d2f_A MALY protein; aminotran 100.0 7.3E-35 2.5E-39 290.7 27.3 353 59-445 7-389 (390)
52 1c7n_A Cystalysin; transferase 100.0 6E-35 2.1E-39 292.1 20.2 356 59-447 8-395 (399)
53 3nra_A Aspartate aminotransfer 100.0 8.2E-35 2.8E-39 291.8 16.0 357 59-446 20-406 (407)
54 2zc0_A Alanine glyoxylate tran 100.0 4.5E-33 1.6E-37 279.2 27.5 335 74-445 33-404 (407)
55 3jtx_A Aminotransferase; NP_28 100.0 3E-34 1E-38 286.7 18.5 350 57-442 12-396 (396)
56 1yiz_A Kynurenine aminotransfe 100.0 5.2E-33 1.8E-37 280.9 27.5 337 76-442 38-427 (429)
57 3ly1_A Putative histidinol-pho 100.0 3.9E-33 1.3E-37 274.4 25.6 329 64-442 5-350 (354)
58 3aow_A Putative uncharacterize 100.0 1E-32 3.5E-37 280.1 27.8 338 74-445 75-445 (448)
59 3b1d_A Betac-S lyase; HET: PLP 100.0 2E-36 6.9E-41 302.2 0.0 353 58-442 12-391 (392)
60 3euc_A Histidinol-phosphate am 100.0 7.3E-32 2.5E-36 266.7 31.6 321 74-442 29-366 (367)
61 3b46_A Aminotransferase BNA3; 100.0 7E-33 2.4E-37 281.5 24.7 337 73-439 55-442 (447)
62 3h14_A Aminotransferase, class 100.0 1E-32 3.4E-37 275.3 23.9 333 73-449 29-386 (391)
63 1vp4_A Aminotransferase, putat 100.0 7.1E-33 2.4E-37 279.6 22.7 345 74-446 42-419 (425)
64 3g0t_A Putative aminotransfera 100.0 4.7E-33 1.6E-37 281.8 21.4 355 47-442 16-435 (437)
65 2dou_A Probable N-succinyldiam 100.0 5.3E-33 1.8E-37 275.8 20.7 329 73-441 23-375 (376)
66 1j32_A Aspartate aminotransfer 100.0 1E-32 3.5E-37 274.9 22.6 338 73-445 28-387 (388)
67 2x5d_A Probable aminotransfera 100.0 1.3E-32 4.3E-37 276.6 23.0 337 72-448 34-401 (412)
68 2o1b_A Aminotransferase, class 100.0 9E-33 3.1E-37 276.9 21.8 337 72-445 44-403 (404)
69 3ftb_A Histidinol-phosphate am 100.0 8.2E-32 2.8E-36 265.5 27.8 336 58-442 8-359 (361)
70 3ezs_A Aminotransferase ASPB; 100.0 1.3E-32 4.3E-37 273.0 21.9 323 73-445 22-375 (376)
71 3dyd_A Tyrosine aminotransfera 100.0 8.2E-32 2.8E-36 272.0 27.3 344 70-446 49-425 (427)
72 2z61_A Probable aspartate amin 100.0 3.2E-32 1.1E-36 269.6 22.9 321 73-442 27-369 (370)
73 3ffh_A Histidinol-phosphate am 100.0 5.4E-32 1.8E-36 267.2 24.4 315 75-441 32-363 (363)
74 2zyj_A Alpha-aminodipate amino 100.0 2.6E-32 8.9E-37 272.9 21.6 340 74-445 31-393 (397)
75 1gd9_A Aspartate aminotransfer 100.0 6.8E-32 2.3E-36 269.0 24.1 335 76-446 27-387 (389)
76 3ele_A Amino transferase; RER0 100.0 1.3E-31 4.3E-36 267.9 24.9 333 74-446 34-397 (398)
77 3fvs_A Kynurenine--oxoglutarat 100.0 1.4E-31 4.8E-36 269.7 25.2 339 76-445 29-422 (422)
78 1o4s_A Aspartate aminotransfer 100.0 9E-32 3.1E-36 268.3 23.1 331 73-442 39-387 (389)
79 1xi9_A Putative transaminase; 100.0 8.2E-32 2.8E-36 270.1 21.5 341 72-445 35-403 (406)
80 3piu_A 1-aminocyclopropane-1-c 100.0 1.3E-31 4.5E-36 271.1 22.9 342 70-447 31-434 (435)
81 1lc5_A COBD, L-threonine-O-3-p 100.0 1.5E-31 5.2E-36 264.2 22.6 323 70-446 19-361 (364)
82 3cq5_A Histidinol-phosphate am 100.0 3.9E-30 1.3E-34 254.5 32.5 321 78-442 33-366 (369)
83 2o0r_A RV0858C (N-succinyldiam 100.0 2.4E-31 8.3E-36 267.1 24.1 334 77-445 27-396 (411)
84 1v2d_A Glutamine aminotransfer 100.0 5.2E-31 1.8E-35 261.9 26.1 325 77-447 27-373 (381)
85 1u08_A Hypothetical aminotrans 100.0 2.6E-31 8.8E-36 264.6 23.5 330 76-439 31-385 (386)
86 3hdo_A Histidinol-phosphate am 100.0 2.5E-31 8.5E-36 262.2 23.1 323 72-442 23-353 (360)
87 3op7_A Aminotransferase class 100.0 1.1E-30 3.6E-35 259.1 26.1 308 98-446 46-372 (375)
88 2bwn_A 5-aminolevulinate synth 100.0 7.2E-30 2.5E-34 255.4 32.0 332 73-445 44-400 (401)
89 2gb3_A Aspartate aminotransfer 100.0 2.2E-31 7.4E-36 267.3 20.6 329 73-446 41-403 (409)
90 3qgu_A LL-diaminopimelate amin 100.0 7E-31 2.4E-35 266.9 23.9 339 72-442 66-438 (449)
91 3get_A Histidinol-phosphate am 100.0 1.7E-30 5.7E-35 256.7 23.7 322 75-442 30-365 (365)
92 3e2y_A Kynurenine-oxoglutarate 100.0 3.8E-30 1.3E-34 258.1 26.3 335 75-439 23-408 (410)
93 1b5p_A Protein (aspartate amin 100.0 3.7E-30 1.3E-34 256.3 25.3 334 74-442 30-383 (385)
94 2x5f_A Aspartate_tyrosine_phen 100.0 4.7E-31 1.6E-35 266.6 17.8 340 75-445 47-429 (430)
95 3fkd_A L-threonine-O-3-phospha 100.0 6E-30 2.1E-34 251.3 24.9 326 62-445 2-342 (350)
96 1iay_A ACC synthase 2, 1-amino 100.0 5E-30 1.7E-34 258.9 24.3 338 76-445 37-427 (428)
97 2q7w_A Aspartate aminotransfer 100.0 2.7E-30 9.3E-35 258.0 21.0 335 69-441 20-396 (396)
98 1kmj_A Selenocysteine lyase; p 100.0 2.9E-29 1E-33 250.9 27.6 318 91-445 34-405 (406)
99 3rq1_A Aminotransferase class 100.0 1E-29 3.4E-34 255.9 24.2 341 74-447 37-417 (418)
100 1ajs_A Aspartate aminotransfer 100.0 1.1E-29 3.6E-34 255.1 23.1 340 74-445 29-411 (412)
101 2r2n_A Kynurenine/alpha-aminoa 100.0 4.8E-29 1.6E-33 251.5 27.6 301 114-442 79-422 (425)
102 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.4E-29 4.8E-34 250.3 21.3 319 75-445 9-370 (371)
103 1bw0_A TAT, protein (tyrosine 100.0 4.5E-29 1.5E-33 250.9 24.5 340 75-446 33-414 (416)
104 2ay1_A Aroat, aromatic amino a 100.0 2.7E-29 9.2E-34 250.6 21.7 329 74-440 25-392 (394)
105 1fg7_A Histidinol phosphate am 100.0 5.9E-29 2E-33 244.9 23.5 314 75-440 29-354 (356)
106 3t18_A Aminotransferase class 100.0 3.5E-29 1.2E-33 251.5 22.2 337 74-446 36-411 (413)
107 1elu_A L-cysteine/L-cystine C- 100.0 3.3E-29 1.1E-33 249.3 21.6 315 89-440 25-388 (390)
108 3ei9_A LL-diaminopimelate amin 100.0 7.6E-29 2.6E-33 250.6 24.2 342 71-442 52-426 (432)
109 1t3i_A Probable cysteine desul 100.0 1.9E-28 6.5E-33 246.3 26.7 334 73-447 25-415 (420)
110 3f9t_A TDC, L-tyrosine decarbo 100.0 5E-28 1.7E-32 241.0 28.5 320 91-442 41-396 (397)
111 3g7q_A Valine-pyruvate aminotr 100.0 2.2E-29 7.4E-34 253.2 18.3 298 118-446 80-414 (417)
112 2dr1_A PH1308 protein, 386AA l 100.0 3.5E-28 1.2E-32 241.6 25.8 322 75-445 20-379 (386)
113 3if2_A Aminotransferase; YP_26 100.0 1.2E-28 4E-33 250.1 22.7 303 118-446 88-441 (444)
114 3asa_A LL-diaminopimelate amin 100.0 1.2E-28 4E-33 246.6 22.2 327 74-445 32-393 (400)
115 3ez1_A Aminotransferase MOCR f 100.0 7.6E-29 2.6E-33 249.8 20.3 344 77-446 27-416 (423)
116 4f4e_A Aromatic-amino-acid ami 100.0 1.9E-28 6.5E-33 246.7 23.1 332 75-442 49-420 (420)
117 3ppl_A Aspartate aminotransfer 100.0 1.2E-28 4.1E-33 248.8 19.7 342 77-445 35-420 (427)
118 3d6k_A Putative aminotransfera 100.0 1.8E-28 6E-33 247.2 20.2 340 77-445 34-418 (422)
119 3kgw_A Alanine-glyoxylate amin 100.0 3.5E-28 1.2E-32 242.1 22.1 317 92-447 34-390 (393)
120 1qz9_A Kynureninase; kynurenin 100.0 3.9E-27 1.3E-31 236.6 29.0 332 73-445 27-402 (416)
121 1vjo_A Alanine--glyoxylate ami 100.0 9.6E-28 3.3E-32 239.2 24.2 323 74-442 33-393 (393)
122 1m32_A 2-aminoethylphosphonate 100.0 2.3E-27 7.8E-32 233.7 26.3 328 77-445 5-365 (366)
123 3lvm_A Cysteine desulfurase; s 100.0 1.2E-27 4.3E-32 240.8 25.0 328 72-449 20-403 (423)
124 3zrp_A Serine-pyruvate aminotr 100.0 1.8E-27 6.1E-32 236.2 24.6 315 92-447 13-365 (384)
125 3p1t_A Putative histidinol-pho 100.0 5.8E-27 2E-31 228.5 26.9 314 73-442 14-335 (337)
126 3fsl_A Aromatic-amino-acid ami 100.0 2.1E-27 7.3E-32 237.0 24.1 330 76-441 27-397 (397)
127 3cai_A Possible aminotransfera 100.0 5.8E-27 2E-31 234.6 26.9 323 74-439 26-404 (406)
128 3ke3_A Putative serine-pyruvat 100.0 1.6E-27 5.5E-32 236.7 22.4 331 68-446 5-377 (379)
129 1yaa_A Aspartate aminotransfer 100.0 1.1E-27 3.8E-32 240.5 20.8 339 74-445 28-411 (412)
130 3nnk_A Ureidoglycine-glyoxylat 100.0 2.6E-27 8.8E-32 237.4 23.4 313 92-446 24-391 (411)
131 3f0h_A Aminotransferase; RER07 100.0 3.3E-27 1.1E-31 233.8 23.9 310 92-442 30-372 (376)
132 1eg5_A Aminotransferase; PLP-d 100.0 2.4E-26 8.2E-31 228.0 29.8 329 76-448 3-379 (384)
133 3e9k_A Kynureninase; kynurenin 100.0 3.7E-27 1.3E-31 240.5 24.1 341 74-445 67-461 (465)
134 4hvk_A Probable cysteine desul 100.0 2.6E-26 9E-31 227.3 27.6 329 77-449 3-377 (382)
135 4eb5_A Probable cysteine desul 100.0 3.2E-26 1.1E-30 227.0 28.3 327 77-447 3-375 (382)
136 1ax4_A Tryptophanase; tryptoph 99.9 1.8E-26 6.1E-31 235.5 25.3 350 73-449 41-445 (467)
137 2rfv_A Methionine gamma-lyase; 99.9 8.3E-27 2.8E-31 233.1 21.8 288 114-440 61-396 (398)
138 1svv_A Threonine aldolase; str 99.9 6.6E-27 2.3E-31 229.9 20.4 321 77-445 15-358 (359)
139 3f6t_A Aspartate aminotransfer 99.9 1.5E-27 5.3E-32 246.8 15.5 332 89-446 113-526 (533)
140 2huf_A Alanine glyoxylate amin 99.9 2.4E-26 8.1E-31 229.1 23.5 331 72-447 16-385 (393)
141 3mad_A Sphingosine-1-phosphate 99.9 5.6E-26 1.9E-30 234.6 26.4 326 91-449 107-473 (514)
142 2z9v_A Aspartate aminotransfer 99.9 2.5E-26 8.5E-31 228.8 22.9 323 75-446 9-372 (392)
143 3isl_A Purine catabolism prote 99.9 4.7E-26 1.6E-30 228.6 24.3 289 117-446 44-391 (416)
144 2dkj_A Serine hydroxymethyltra 99.9 2.2E-26 7.5E-31 230.4 21.7 328 75-444 23-387 (407)
145 1uu1_A Histidinol-phosphate am 99.9 1.2E-26 4.2E-31 226.3 18.8 307 75-440 19-334 (335)
146 1v72_A Aldolase; PLP-dependent 99.9 9.3E-27 3.2E-31 228.7 17.4 322 75-445 7-353 (356)
147 2yrr_A Aminotransferase, class 99.9 4.5E-26 1.5E-30 223.3 22.3 303 92-442 11-351 (353)
148 1iug_A Putative aspartate amin 99.9 2.3E-26 8E-31 225.4 19.8 308 92-445 12-348 (352)
149 1jg8_A L-ALLO-threonine aldola 99.9 6.1E-26 2.1E-30 222.3 20.7 331 75-445 3-346 (347)
150 2oga_A Transaminase; PLP-depen 99.9 3.7E-26 1.3E-30 228.5 19.1 319 75-446 30-397 (399)
151 3vax_A Putative uncharacterize 99.9 3.8E-26 1.3E-30 228.1 19.2 328 68-442 14-398 (400)
152 1cs1_A CGS, protein (cystathio 99.9 2.5E-25 8.6E-30 221.4 24.7 286 114-441 49-384 (386)
153 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.1E-25 3.8E-30 228.9 22.4 346 73-449 40-435 (456)
154 2oqx_A Tryptophanase; lyase, p 99.9 8E-26 2.7E-30 230.7 20.8 349 74-448 40-445 (467)
155 2ch1_A 3-hydroxykynurenine tra 99.9 3.1E-25 1.1E-29 221.2 24.2 318 92-448 29-386 (396)
156 3ihj_A Alanine aminotransferas 99.9 2.2E-25 7.5E-30 228.8 22.6 322 92-446 102-494 (498)
157 3meb_A Aspartate aminotransfer 99.9 1E-25 3.6E-30 228.6 19.7 337 77-446 51-445 (448)
158 3tcm_A Alanine aminotransferas 99.9 1.4E-25 4.7E-30 230.6 20.7 327 92-446 107-495 (500)
159 3qhx_A Cystathionine gamma-syn 99.9 2.9E-25 9.9E-30 221.3 22.3 283 113-437 62-391 (392)
160 3a9z_A Selenocysteine lyase; P 99.9 1.2E-24 4.2E-29 219.6 26.7 345 73-446 17-429 (432)
161 7aat_A Aspartate aminotransfer 99.9 4.8E-25 1.6E-29 220.4 23.4 337 77-442 30-401 (401)
162 1e5e_A MGL, methionine gamma-l 99.9 4.8E-25 1.6E-29 220.6 22.9 284 116-445 61-395 (404)
163 2cb1_A O-acetyl homoserine sul 99.9 9.1E-25 3.1E-29 219.3 24.7 304 87-439 28-411 (412)
164 2bkw_A Alanine-glyoxylate amin 99.9 3.4E-25 1.2E-29 219.9 20.8 307 92-445 16-384 (385)
165 3frk_A QDTB; aminotransferase, 99.9 1.4E-25 4.9E-30 222.0 16.6 303 94-442 17-366 (373)
166 3ecd_A Serine hydroxymethyltra 99.9 1.5E-24 5.1E-29 218.2 24.0 318 92-445 44-397 (425)
167 3mc6_A Sphingosine-1-phosphate 99.9 2E-24 6.9E-29 222.1 25.2 330 91-449 75-441 (497)
168 3ndn_A O-succinylhomoserine su 99.9 2.9E-25 9.9E-30 222.4 18.1 286 112-441 76-413 (414)
169 1gc0_A Methionine gamma-lyase; 99.9 3.2E-24 1.1E-28 214.3 25.5 289 114-440 62-397 (398)
170 1mdo_A ARNB aminotransferase; 99.9 1.3E-24 4.5E-29 216.5 22.6 311 92-445 18-386 (393)
171 4eu1_A Mitochondrial aspartate 99.9 3.7E-25 1.3E-29 221.9 18.7 332 76-442 42-409 (409)
172 2vi8_A Serine hydroxymethyltra 99.9 1.4E-24 4.7E-29 217.2 22.1 329 76-446 25-388 (405)
173 3uwc_A Nucleotide-sugar aminot 99.9 3.4E-25 1.2E-29 219.2 17.4 298 96-445 21-371 (374)
174 3dr4_A Putative perosamine syn 99.9 2.5E-25 8.7E-30 221.7 15.2 306 93-441 35-390 (391)
175 3nyt_A Aminotransferase WBPE; 99.9 5.9E-25 2E-29 217.2 17.6 302 94-440 16-360 (367)
176 1b9h_A AHBA synthase, protein 99.9 4.3E-24 1.5E-28 212.5 23.0 308 93-442 16-386 (388)
177 3h7f_A Serine hydroxymethyltra 99.9 5.1E-24 1.7E-28 216.1 23.3 324 92-446 57-415 (447)
178 1pff_A Methionine gamma-lyase; 99.9 8.3E-24 2.8E-28 205.8 23.3 277 121-440 2-330 (331)
179 3lws_A Aromatic amino acid bet 99.9 5.4E-25 1.8E-29 216.5 14.9 314 92-441 19-356 (357)
180 3k7y_A Aspartate aminotransfer 99.9 2E-24 6.7E-29 215.5 18.8 334 76-444 30-404 (405)
181 2po3_A 4-dehydrase; external a 99.9 8.6E-24 2.9E-28 213.0 22.2 329 92-466 30-413 (424)
182 3gbx_A Serine hydroxymethyltra 99.9 1.2E-23 4.2E-28 211.2 23.0 312 92-445 42-396 (420)
183 1ibj_A CBL, cystathionine beta 99.9 1.4E-25 4.9E-30 227.6 8.7 310 88-445 100-462 (464)
184 1wyu_B Glycine dehydrogenase s 99.9 5.4E-23 1.8E-27 210.0 27.7 315 89-444 75-440 (474)
185 3acz_A Methionine gamma-lyase; 99.9 1.9E-23 6.5E-28 208.0 23.2 282 113-442 55-387 (389)
186 2fnu_A Aminotransferase; prote 99.9 1.6E-23 5.3E-28 207.2 22.1 309 92-445 11-372 (375)
187 2aeu_A Hypothetical protein MJ 99.9 4E-24 1.4E-28 211.7 17.5 319 76-446 29-372 (374)
188 3nmy_A Xometc, cystathionine g 99.9 4.3E-24 1.5E-28 212.9 17.3 286 112-442 62-397 (400)
189 3pj0_A LMO0305 protein; struct 99.9 8.6E-24 2.9E-28 207.9 18.2 311 92-441 27-359 (359)
190 3ffr_A Phosphoserine aminotran 99.9 5.4E-23 1.8E-27 202.1 23.0 304 92-441 15-361 (362)
191 3n0l_A Serine hydroxymethyltra 99.9 8.3E-23 2.8E-27 205.0 24.2 312 92-445 37-389 (417)
192 2zy4_A L-aspartate beta-decarb 99.9 4.4E-23 1.5E-27 213.5 21.7 341 77-446 106-523 (546)
193 2c81_A Glutamine-2-deoxy-scyll 99.9 1.4E-22 4.8E-27 203.7 24.5 315 92-446 14-415 (418)
194 1n8p_A Cystathionine gamma-lya 99.9 4.3E-23 1.5E-27 205.6 19.6 284 114-441 52-392 (393)
195 1qgn_A Protein (cystathionine 99.9 1.1E-22 3.7E-27 204.9 22.6 281 114-442 111-443 (445)
196 1o69_A Aminotransferase; struc 99.9 5E-22 1.7E-26 198.1 27.2 311 93-442 11-385 (394)
197 2qma_A Diaminobutyrate-pyruvat 99.9 4.2E-22 1.5E-26 204.7 27.4 344 72-445 98-496 (497)
198 2ctz_A O-acetyl-L-homoserine s 99.9 7.9E-23 2.7E-27 205.6 19.8 281 114-442 55-421 (421)
199 3cog_A Cystathionine gamma-lya 99.9 1.6E-22 5.3E-27 202.2 19.8 287 114-442 64-400 (403)
200 4h51_A Aspartate aminotransfer 99.9 5.4E-22 1.8E-26 198.1 22.3 324 94-447 65-419 (420)
201 3b8x_A WBDK, pyridoxamine 5-ph 99.9 2.8E-21 9.7E-26 192.3 24.6 307 92-437 13-389 (390)
202 2fq6_A Cystathionine beta-lyas 99.9 7.6E-22 2.6E-26 197.4 18.9 297 109-439 74-413 (415)
203 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 7.9E-21 2.7E-25 192.1 25.9 329 74-442 30-434 (437)
204 3ri6_A O-acetylhomoserine sulf 99.9 1E-21 3.5E-26 197.1 18.9 280 114-441 79-429 (430)
205 1w23_A Phosphoserine aminotran 99.9 7.4E-21 2.5E-25 186.9 22.5 316 76-442 3-358 (360)
206 3ju7_A Putative PLP-dependent 99.9 7.3E-21 2.5E-25 188.3 22.2 310 92-442 14-373 (377)
207 3hbx_A GAD 1, glutamate decarb 99.9 2.5E-20 8.5E-25 191.4 25.8 337 92-452 68-451 (502)
208 2dgk_A GAD-beta, GADB, glutama 99.9 5.7E-20 2E-24 186.6 27.8 335 92-450 54-439 (452)
209 2okj_A Glutamate decarboxylase 99.9 1.1E-19 3.7E-24 187.0 28.8 306 119-445 134-502 (504)
210 3bwn_A AT1G70560, L-tryptophan 99.9 1.8E-21 6E-26 193.9 14.6 269 120-442 71-385 (391)
211 2x3l_A ORN/Lys/Arg decarboxyla 99.9 5E-21 1.7E-25 193.8 18.0 283 116-446 56-354 (446)
212 1rv3_A Serine hydroxymethyltra 99.9 1.3E-20 4.6E-25 192.5 20.8 316 92-444 56-430 (483)
213 2z67_A O-phosphoseryl-tRNA(SEC 99.9 4.6E-20 1.6E-24 187.4 22.9 292 119-441 135-455 (456)
214 2jis_A Cysteine sulfinic acid 99.8 3.7E-19 1.3E-23 183.5 29.2 306 119-445 150-515 (515)
215 2c0r_A PSAT, phosphoserine ami 99.8 1.6E-20 5.3E-25 184.9 17.6 300 92-442 15-359 (362)
216 3ht4_A Aluminum resistance pro 99.8 2.2E-20 7.5E-25 187.6 17.7 287 93-406 37-345 (431)
217 2hox_A ALLIIN lyase 1; cystein 99.8 7E-21 2.4E-25 191.6 13.4 317 74-442 55-423 (427)
218 2fyf_A PSAT, phosphoserine ami 99.8 1.1E-20 3.9E-25 188.5 14.2 300 92-444 51-397 (398)
219 2a7v_A Serine hydroxymethyltra 99.8 2.4E-19 8.1E-24 182.0 22.5 315 92-442 66-439 (490)
220 3vp6_A Glutamate decarboxylase 99.8 1.7E-18 5.8E-23 178.0 27.6 307 118-445 136-505 (511)
221 1js3_A DDC;, DOPA decarboxylas 99.8 4.1E-18 1.4E-22 174.5 25.8 306 118-447 114-476 (486)
222 4e1o_A HDC, histidine decarbox 99.8 1.3E-17 4.6E-22 170.3 26.8 302 117-445 118-478 (481)
223 3k40_A Aromatic-L-amino-acid d 99.8 2E-17 6.7E-22 168.6 25.8 306 118-445 114-471 (475)
224 3jzl_A Putative cystathionine 99.8 6.5E-18 2.2E-22 168.2 21.2 279 93-407 31-340 (409)
225 1wyu_A Glycine dehydrogenase ( 99.8 8.1E-18 2.8E-22 170.0 20.1 280 117-441 108-437 (438)
226 1c4k_A Protein (ornithine deca 99.8 1.5E-17 5.2E-22 176.1 22.7 304 117-446 173-567 (730)
227 3hvy_A Cystathionine beta-lyas 99.8 2.8E-17 9.5E-22 164.2 22.0 271 93-406 46-356 (427)
228 3i16_A Aluminum resistance pro 99.8 2.8E-17 9.7E-22 164.1 21.6 246 118-406 74-356 (427)
229 2vyc_A Biodegradative arginine 99.7 1.3E-16 4.6E-21 170.3 23.4 305 119-445 207-605 (755)
230 3e77_A Phosphoserine aminotran 99.7 3.9E-17 1.3E-21 160.2 16.8 315 90-442 22-373 (377)
231 3qm2_A Phosphoserine aminotran 99.7 1.8E-17 6.2E-22 163.5 12.0 308 92-442 38-383 (386)
232 3m5u_A Phosphoserine aminotran 99.7 4.6E-16 1.6E-20 152.0 18.3 312 76-442 5-358 (361)
233 3n75_A LDC, lysine decarboxyla 99.7 3.8E-15 1.3E-19 156.6 26.3 302 116-442 194-558 (715)
234 3hl2_A O-phosphoseryl-tRNA(SEC 99.6 8.8E-14 3E-18 136.3 23.0 295 133-450 135-466 (501)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.6 1.8E-13 6.3E-18 135.8 22.6 307 119-446 100-444 (450)
236 3ou5_A Serine hydroxymethyltra 99.4 8.6E-12 2.9E-16 121.7 18.6 282 125-442 108-439 (490)
237 1tks_A 3,4-dihydroxy-2-butanon 68.2 4.3 0.00015 35.0 3.8 38 222-263 157-194 (204)
238 1vhx_A Putative holliday junct 56.7 14 0.00046 30.3 4.7 57 210-268 43-101 (150)
239 1snn_A DHBP synthase, 3,4-dihy 56.1 12 0.00043 32.7 4.6 37 222-263 176-212 (227)
240 3mio_A DHBP synthase, 3,4-dihy 55.4 14 0.00047 31.9 4.7 38 222-263 156-194 (206)
241 1g57_A DHBP synthase, 3,4-dihy 48.5 19 0.00064 31.4 4.4 36 223-263 166-201 (217)
242 3rcm_A TATD family hydrolase; 45.3 97 0.0033 28.1 9.1 103 130-265 29-134 (287)
243 1k4i_A 3,4-dihydroxy-2-butanon 42.2 25 0.00086 30.8 4.2 37 222-263 165-212 (233)
244 2qlc_A DNA repair protein RADC 37.8 56 0.0019 25.7 5.3 50 212-266 58-110 (126)
245 4ggi_A UDP-2,3-diacylglucosami 37.0 41 0.0014 30.6 5.2 41 211-262 234-275 (283)
246 3bzy_B ESCU; auto cleavage pro 36.6 19 0.00064 26.1 2.2 22 247-268 29-50 (83)
247 3ipw_A Hydrolase TATD family p 35.1 1.5E+02 0.0051 27.5 8.8 105 130-266 64-176 (325)
248 3ovp_A Ribulose-phosphate 3-ep 34.4 2.2E+02 0.0075 24.7 9.4 37 227-264 137-175 (228)
249 3v7e_A Ribosome-associated pro 34.0 92 0.0032 22.1 5.7 47 211-267 16-62 (82)
250 3pzt_A Endoglucanase; alpha/be 32.9 90 0.0031 28.9 7.0 53 210-265 70-125 (327)
251 1x7f_A Outer surface protein; 31.9 29 0.00098 33.2 3.2 77 210-296 39-116 (385)
252 3irs_A Uncharacterized protein 31.1 1.1E+02 0.0036 27.7 7.0 50 211-264 108-157 (291)
253 3t7y_A YOP proteins translocat 30.4 25 0.00085 26.3 2.0 23 246-268 43-65 (97)
254 2vt1_B Surface presentation of 30.3 27 0.00092 25.9 2.2 23 246-268 28-50 (93)
255 3c01_E Surface presentation of 28.7 28 0.00095 26.1 2.0 23 246-268 28-50 (98)
256 4gqr_A Pancreatic alpha-amylas 28.5 35 0.0012 33.5 3.4 27 243-269 75-101 (496)
257 1iv0_A Hypothetical protein; r 27.4 99 0.0034 22.9 5.0 57 210-268 39-96 (98)
258 1lwj_A 4-alpha-glucanotransfer 27.3 41 0.0014 32.7 3.6 26 243-268 68-93 (441)
259 2p0o_A Hypothetical protein DU 27.0 29 0.001 32.9 2.3 69 233-311 38-107 (372)
260 3j21_Z 50S ribosomal protein L 26.5 1.1E+02 0.0036 22.7 5.1 43 211-263 20-62 (99)
261 3m0z_A Putative aldolase; MCSG 26.0 24 0.00082 30.8 1.4 59 203-269 162-223 (249)
262 3m6y_A 4-hydroxy-2-oxoglutarat 25.0 25 0.00085 31.0 1.3 36 228-269 211-246 (275)
263 1w41_A 50S ribosomal protein L 24.6 1.1E+02 0.0039 22.6 5.0 43 211-263 21-63 (101)
264 1sur_A PAPS reductase; assimil 23.9 3.3E+02 0.011 23.0 9.1 33 224-263 70-102 (215)
265 1wza_A Alpha-amylase A; hydrol 23.8 55 0.0019 32.2 3.9 27 243-269 80-106 (488)
266 2dh2_A 4F2 cell-surface antige 22.9 89 0.003 30.2 5.1 29 243-271 80-108 (424)
267 3edf_A FSPCMD, cyclomaltodextr 22.9 73 0.0025 32.4 4.6 29 243-271 197-225 (601)
268 2z1k_A (NEO)pullulanase; hydro 22.5 59 0.002 31.9 3.8 27 243-269 95-121 (475)
269 3mfq_A TROA, high-affinity zin 22.3 56 0.0019 29.6 3.3 43 211-263 201-243 (282)
270 4aie_A Glucan 1,6-alpha-glucos 22.2 57 0.002 32.5 3.7 27 243-269 78-104 (549)
271 2guy_A Alpha-amylase A; (beta- 22.1 1.1E+02 0.0036 30.0 5.6 28 243-270 96-123 (478)
272 3o63_A Probable thiamine-phosp 22.1 57 0.0019 28.9 3.2 51 211-265 46-103 (243)
273 1agx_A Glutaminase-asparaginas 21.8 1.3E+02 0.0045 27.9 5.8 51 210-268 228-278 (331)
274 1g94_A Alpha-amylase; beta-alp 21.7 55 0.0019 31.9 3.3 26 243-268 63-88 (448)
275 1zzm_A Putative deoxyribonucle 21.6 3.9E+02 0.013 23.0 9.6 53 210-263 77-132 (259)
276 3b1s_B Flagellar biosynthetic 26.6 20 0.00069 26.2 0.0 22 247-268 29-50 (87)
277 3ff4_A Uncharacterized protein 21.0 87 0.003 24.3 3.7 39 211-263 72-110 (122)
278 2aaa_A Alpha-amylase; glycosid 21.0 1.4E+02 0.0048 29.2 6.2 28 243-270 96-123 (484)
279 3ghf_A Septum site-determining 20.9 2.9E+02 0.0098 21.2 7.1 51 204-262 20-78 (120)
280 4f6o_A Metacaspase-1; rossmann 20.9 1.9E+02 0.0065 27.1 6.6 14 256-269 184-197 (350)
281 1j6o_A TATD-related deoxyribon 20.7 3E+02 0.01 24.1 8.0 52 210-264 85-139 (268)
282 1wzl_A Alpha-amylase II; pullu 20.6 62 0.0021 32.8 3.6 29 243-271 218-246 (585)
283 3cpq_A 50S ribosomal protein L 20.3 1.5E+02 0.005 22.4 4.8 43 211-263 26-68 (110)
284 2wc7_A Alpha amylase, catalyti 20.1 57 0.0019 32.2 3.1 25 244-268 102-126 (488)
285 1ua7_A Alpha-amylase; beta-alp 20.0 71 0.0024 30.8 3.7 27 243-269 73-99 (422)
No 1
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=4e-70 Score=550.68 Aligned_cols=402 Identities=29% Similarity=0.507 Sum_probs=355.2
Q ss_pred CCCCCCchHHHHHHHhhhcccCC-CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc
Q 012138 32 TSPSSSSSQQLINLEYEYSAHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS 110 (470)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~ 110 (470)
+..|+|+|++++++.++++...+ .++|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+.
T Consensus 20 t~iPGP~s~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~ 99 (456)
T 4atq_A 20 GAFPGPKSQALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHT 99 (456)
T ss_dssp SSSSCHHHHHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCC
T ss_pred CCCCChHHHHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCc
Confidence 45678899999999999987765 46799999999999999999999999999999999999999999999999998765
Q ss_pred CCC-CCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 111 SRA-FYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 111 ~~~-~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
... ..++...+++++|.++.+ .++++|+|||+||++.|+|+++.+ .++..|+.++++|||++.+++++
T Consensus 100 ~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~--------t~r~~ii~~~~~yHG~t~~als~ 171 (456)
T 4atq_A 100 CFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLA--------TGRDAVVAFDHAYHGRTNLTMAL 171 (456)
T ss_dssp TTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEETTCCCCSSHHHHHH
T ss_pred ccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhh--------hcCCeEEEEecccCCcccccccc
Confidence 442 345667889999999874 568999999999999999999986 36779999999999999999998
Q ss_pred cCCc-ccccCCCCCCCCeeeecCC-----------CHHHHHHHHHh-----cCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 187 SCDN-EAIRGFGPLLPGHLKVDFG-----------DITALEKIFKE-----SGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~~~~~~-----------d~~~Le~~l~~-----~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
++.. .++..+.++.+++..+|++ +.+.+++.++. .++++++||+||+++.+|.+.|+++|+++
T Consensus 172 t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~ 251 (456)
T 4atq_A 172 TAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPA 251 (456)
T ss_dssp CCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHH
T ss_pred ccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHH
Confidence 8765 3566778888887777654 23444443332 23589999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHH
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPL 329 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~ 329 (470)
|+++|++||++||+||||+||||+|++|+++++|+.||+++++|+++||+ |+|++++++++++.+.+..+++||++||+
T Consensus 252 lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~-P~~av~~~~~i~~~~~~~~~~~Tf~gnpl 330 (456)
T 4atq_A 252 LSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGL-PLSAITGRADLLDAVHPGGLGGTYGGNPV 330 (456)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTS-SCEEEEEEHHHHTTSCTTSSCCSSSSCHH
T ss_pred HHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcC-CceeeEecHHHHhcccccCCCCCCCCChH
Confidence 99999999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCC----CceEEEeccceeEEEEeccCCC----chhHHHHHHH
Q 012138 330 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP----NYVKEVRGRGLFNAVEFDKTAL----PVSAYDICLK 401 (470)
Q Consensus 330 ~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p----~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~ 401 (470)
+|+++.++|+.++++++.+++++++++++++|+++..++| +.+.++|+.|+|+++++..+.. ......+.+.
T Consensus 331 a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~ 410 (456)
T 4atq_A 331 ACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAA 410 (456)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764 4688999999999999965432 2246678999
Q ss_pred HHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 402 MKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 402 l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|+++||++.+++ ++.|||.||+++|+++|++++++|+++|+
T Consensus 411 ~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 411 CLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp HHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 999999987653 68999999999999999999999999997
No 2
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=2e-68 Score=540.06 Aligned_cols=400 Identities=27% Similarity=0.414 Sum_probs=346.7
Q ss_pred hHHHHHHHhhhcccCCCC-------CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYHP-------VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~-------~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
.+.+.+++++|.+|.|.+ .|++++||+|+|+||.|||+|||+.++++++++||+||+|.+++.+|++++.+..
T Consensus 24 ~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~ 103 (473)
T 4e3q_A 24 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYH 103 (473)
T ss_dssp CCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCC
T ss_pred cccHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccc
Confidence 345778888999998764 3899999999999999999999999999999999999999999999999987543
Q ss_pred C--CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 R--AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 ~--~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
. ...++...+|+++|.+..+ .++|+|+|||+||++.|+|+++.|+. .+|. +++.+||++.++|||++.++++++
T Consensus 104 ~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~-~~g~-~~r~~ii~~~~~yHG~t~~a~s~t 181 (473)
T 4e3q_A 104 AFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHA-AEGK-PQKRKILTRWNAYHGVTAVSASMT 181 (473)
T ss_dssp CCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHH-HTTC-TTCCEEEEETTCCCCSSHHHHHHS
T ss_pred ccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHH-hcCC-CCcceEEEeeceECCCcccccccc
Confidence 3 2246677899999999884 67999999999999999999987532 2222 467799999999999999999999
Q ss_pred CCcccccCCCCCCCCeeeecCCC------------------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHH
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d------------------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
+.+ ++..|.+..++...++.++ .+++++.+.+.+ +++++||+||+++.+|.+.|+++|++
T Consensus 182 g~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~ 260 (473)
T 4e3q_A 182 GKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQ 260 (473)
T ss_dssp CCG-GGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred ccc-cccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHH
Confidence 864 5556666667766655432 345677776543 57999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC-------cCCcc
Q 012138 249 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ-------PGEHG 321 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~-------~~~~~ 321 (470)
+|+++|++||++||+||||+||||+|++|+++++++.||+++++|+++||++|+|++++++++++.+. ...|+
T Consensus 261 ~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg 340 (473)
T 4e3q_A 261 AILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG 340 (473)
T ss_dssp HHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999669999999999988763 45789
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--------ch
Q 012138 322 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------PV 393 (470)
Q Consensus 322 ~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~ 393 (470)
+||++||++|++++++|+.++++++.+++++++++|+++|+++... | .+.++++.|+|+++++..+.. ..
T Consensus 341 ~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~-~-~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~ 418 (473)
T 4e3q_A 341 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAER-P-NIGEYRGIGFMWALEAVKDKASKTPFDGNLS 418 (473)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTS-T-TEEEEEEETTEEEEEECSBTTTTBCCCGGGC
T ss_pred CCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcC-C-CeeEEeecceEEEEEEecCccccccccccHH
Confidence 9999999999999999999999999999999999999999998654 3 689999999999999854431 12
Q ss_pred hHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 394 ~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
....+.+.|+++||++.+. ++.+||+||+++|++|+++++++|+++|+ ++
T Consensus 419 ~~~~~~~~~~~~Gll~~~~-g~~i~l~PPL~it~~eid~~~~~l~~al~-~v 468 (473)
T 4e3q_A 419 VSERIANTCTDLGLICRPL-GQSVVLCPPFILTEAQMDEMFDKLEKALD-KV 468 (473)
T ss_dssp HHHHHHHHHHHTTEECEEE-TTEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHCCcEEEec-CCEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 3567999999999999887 47999999999999999999999999998 64
No 3
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=5.4e-65 Score=510.80 Aligned_cols=386 Identities=23% Similarity=0.334 Sum_probs=338.5
Q ss_pred CCchHHHHHHHhhhccc-------CCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc
Q 012138 36 SSSSQQLINLEYEYSAH-------NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~-------~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 108 (470)
.+.|++++++.++++.. .|.|+|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+.+++++..
T Consensus 41 ~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~ 120 (454)
T 4ao9_A 41 NPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI 120 (454)
T ss_dssp CHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS
T ss_pred CcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC
Confidence 46789999999998742 37789999999999999999999999999999999999999999999999998765
Q ss_pred ccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 109 LSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
... .++....+++++|++.+ +.++++|+|||+||++.|+++++.++ ++++||.++++|||++......+
T Consensus 121 ~~~--~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~t--------gr~~ii~~~~~yHG~t~~~~~~~ 190 (454)
T 4ao9_A 121 NLT--GHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFT--------GRRKIVVFSGGYHGGVLGFGARP 190 (454)
T ss_dssp CCC--SEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH--------TCCEEEEETTCBCSTTCBBSSSB
T ss_pred Ccc--CCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcc--------cCCeEEEEeCCcCCccccccccc
Confidence 432 35667889999999987 68999999999999999999999863 67799999999999998876655
Q ss_pred CCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccc
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~ 267 (470)
..... ..+...+||||++++++.++++++++++||+||+++++|.+.|+++||++|+++|++||++||+||||
T Consensus 191 ~~~~~-------~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~ 263 (454)
T 4ao9_A 191 SPTTV-------PFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVM 263 (454)
T ss_dssp CTTSC-------CSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred cCccC-------CCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCC
Confidence 43211 12357889999999999999887789999999999999999999999999999999999999999999
Q ss_pred cCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC----CccCCCCCCHHHHHHHHHHHHHHhh
Q 012138 268 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG----EHGSTFGGNPLASAVAIASLDVIRD 343 (470)
Q Consensus 268 ~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~~~~ 343 (470)
+ ||+|.+++++++|+.||+++++|+++||+ |+|++++++++++.+.+. .+++||++||++|++++++|+.+++
T Consensus 264 t--GR~G~~~a~e~~gv~PDi~t~gK~lggG~-Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~ 340 (454)
T 4ao9_A 264 T--SRLAPHGLANKLGIRSDLTTLGKYIGGGM-SFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT 340 (454)
T ss_dssp G--GGGSTTCHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC
T ss_pred c--CCCccccchhccCCCCcEEEeccccCCCC-cceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc
Confidence 9 59999999999999999999999999998 999999999999998653 5889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHHcCceeccCC
Q 012138 344 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKERGILAKPTH 413 (470)
Q Consensus 344 ~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~ 413 (470)
+++.+++++++++|+++|+++..++| .+..+++.|+|+.+++..... ......+...|+++||++.|.+
T Consensus 341 ~~~~~~~~~~g~~l~~~L~~l~~~~~-~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~ 419 (454)
T 4ao9_A 341 PEAAGALAERGEALRARLNALCANEG-VAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG 419 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-BSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC
T ss_pred cChhHHHHHHHHHHHHHHHHHHhhCC-CCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC
Confidence 99999999999999999999988876 788999999999998854321 1223567788999999998764
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 414 DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 414 ~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++.++..+|++|||+++++|+++|. ++..
T Consensus 420 ----~~~~s~~~T~~dId~~l~al~~~l~-~~~a 448 (454)
T 4ao9_A 420 ----FVVLSLPLTDADIDRYVAAIGSFIG-GHGA 448 (454)
T ss_dssp ----EEECCTTCCHHHHHHHHHHHHHHHH-HSGG
T ss_pred ----CEEEeCCCCHHHHHHHHHHHHHHHH-hccc
Confidence 3445677999999999999999998 7643
No 4
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=3.9e-61 Score=492.38 Aligned_cols=402 Identities=22% Similarity=0.359 Sum_probs=349.2
Q ss_pred hHHHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
..++.+.++++.++.+. ..|+++++++|+++||.+|++||||+++++++++||+||+|++++.++++++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~ 90 (476)
T 3i5t_A 11 AGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYAS 90 (476)
T ss_dssp --CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCC
T ss_pred chHHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc
Confidence 34567777888887653 25899999999999999999999999999999999999999999999999977654
Q ss_pred C-CCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 112 R-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 112 ~-~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
. .+.++.+.+++++|++++ +.++|+|++||+||++.|+++++.+. +.+|. +++..||+++++|||++..++++++
T Consensus 91 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~-~~~g~-~~~~~vi~~~~~yHg~~~~~~~~~~ 168 (476)
T 3i5t_A 91 PWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYN-NVLGR-PQKKRIIVRYDGYHGSTALTAACTG 168 (476)
T ss_dssp TTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHH-HHTTC-TTCCEEEEETTCCCCSSHHHHHTCC
T ss_pred cCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHH-HhcCC-CCCCEEEEEcCCcCcCChhhccccC
Confidence 4 567788999999999998 57899999999999999999998752 33332 3566899999999999999999999
Q ss_pred CcccccCCCCCCCCeeeecCCC----------------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 189 DNEAIRGFGPLLPGHLKVDFGD----------------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~d----------------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
.+.++..|.+..+++..++++. +++||+++++.+ +++++|++||++|++|.+.++++||++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~ 248 (476)
T 3i5t_A 169 RTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFK 248 (476)
T ss_dssp CGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHH
T ss_pred ChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence 8888888888877766665332 789999997543 47899999999999999888999999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCccccc-cCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcC-------CccC
Q 012138 252 DLCSKYNILMIADEIQSGLARSGRMLASD-WEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPG-------EHGS 322 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~g~g~~G~~~~~~-~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~-------~~~~ 322 (470)
++|++||++||+||||+||||+|++++++ ++++.||+++|||++++| + |+|++++++++++.+.+. .+++
T Consensus 249 ~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~-plg~v~~~~~i~~~~~~~~~~~~~~~~~~ 327 (476)
T 3i5t_A 249 AICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV-PLGGLAISEAVLARISGENAKGSWFTNGY 327 (476)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSS-CCEEEEECHHHHHTTSGGGCTTCEECCCC
T ss_pred HHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCc-CeEEEEECHHHHHHHhcCCcccccccccC
Confidence 99999999999999999999999988888 999999999999999999 6 999999999999998764 6789
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-c-------hh
Q 012138 323 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-P-------VS 394 (470)
Q Consensus 323 t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-~-------~~ 394 (470)
||++||++++++.++|+.++++++.++++++++++++.|+++. .+| .+..+++.|+|+++++..+.. . ..
T Consensus 328 t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~-~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~ 405 (476)
T 3i5t_A 328 TYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DLP-GVAETRSVGLVGCVQCLLDPTRADGTAEDKAF 405 (476)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TST-TEEEEEEETTEEEEEECCC-----CCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCC-CeEEEEecCceeEEEEecCccccccccchhHH
Confidence 9999999999999999999888899999999999999998764 454 788999999999998865321 0 02
Q ss_pred HHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 395 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 395 ~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
...+++.|+++||++.+.+ +++||+||+.+|+++|++++++|+++++ ++.+
T Consensus 406 ~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~-~~~~ 456 (476)
T 3i5t_A 406 TLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAIT-EVSA 456 (476)
T ss_dssp HHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHHH
Confidence 5678899999999999875 8999999999999999999999999998 7654
No 5
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=1.6e-61 Score=492.79 Aligned_cols=401 Identities=27% Similarity=0.429 Sum_probs=345.9
Q ss_pred CchHHHHHHHhhhcccCCCCC------ceEEEeecCCEEEeC-CCC--eEEeccCCcccccCCCCCHHHHHHHHHHHHHc
Q 012138 37 SSSQQLINLEYEYSAHNYHPV------PIVFSQAKGSSIWDP-EGN--KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL 107 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~------p~~~~~~~g~~~~d~-~G~--~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 107 (470)
.+++++++.++++.++.|.++ |+++++++|+++||. ||+ +||||.++++.+++||+||+|.+++.++++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~ 107 (457)
T 3tfu_A 28 LTPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVM 107 (457)
T ss_dssp CCHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhc
Confidence 457889999999999998875 899999999999999 999 99999999999999999999999999999987
Q ss_pred cccC-CCCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh
Q 012138 108 TLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184 (470)
Q Consensus 108 ~~~~-~~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~ 184 (470)
.+.+ ..+.++...+++++|++++ +.++|+|++||+||++.|+++++.+++.. + .++++.||+++++|||++..++
T Consensus 108 ~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~-g-~~g~~~ii~~~~~yhg~~~~~~ 185 (457)
T 3tfu_A 108 NHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGR-G-LPGKRRLMTWRGGYHGDTFLAM 185 (457)
T ss_dssp SCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHT-T-CTTCCEEEEETTCCCCSSHHHH
T ss_pred cCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhc-C-CCCCceEEEEcCCcCCccHHhh
Confidence 7654 3456778899999999998 46799999999999999999998753322 2 1356799999999999999999
Q ss_pred cccC-CcccccCCCCCCCCeeeecC-------CCHHHHHHHHHhcCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHHH
Q 012138 185 SMSC-DNEAIRGFGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCS 255 (470)
Q Consensus 185 ~~~~-~~~~~~~~~~~~~~~~~~~~-------~d~~~Le~~l~~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~ 255 (470)
+++. .+.++..|.+..++...+++ +|+++|+++++++++++++|++|| ++|++|.+.|+++++++|+++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 265 (457)
T 3tfu_A 186 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR 265 (457)
T ss_dssp TTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH
T ss_pred cccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 8854 45566667777666666665 478999999986545899999999 99999999999999999999999
Q ss_pred hcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC---cC--CccCCCCCCHHH
Q 012138 256 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ---PG--EHGSTFGGNPLA 330 (470)
Q Consensus 256 ~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~---~~--~~~~t~~~~~~~ 330 (470)
+||++||+||+|+|||++|.+++++++++.||++||||+++||+.|+|++++++++++.+. .. .+++||++|+++
T Consensus 266 ~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a 345 (457)
T 3tfu_A 266 RYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLA 345 (457)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHH
T ss_pred HcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHH
Confidence 9999999999999999999999889999999999999999999559999999999999883 33 678999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec
Q 012138 331 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 410 (470)
Q Consensus 331 ~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 410 (470)
++++.++|+.++++++.++++++++++++.|+++. .+| .+..+++.|+|+++++..+. +..++++.|+++||++.
T Consensus 346 ~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~-~v~~vr~~G~~~~i~l~~~~---~~~~~~~~l~~~Gv~v~ 420 (457)
T 3tfu_A 346 CAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALP-AVTDVRVCGAIGVIECDRPV---DLAVATPAALDRGVWLR 420 (457)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GST-TEEEEEECSSCEEEEESSCC---CHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCC-CeeeeecCCeEEEEEECCcc---cHHHHHHHHHHCCeEEE
Confidence 99999999999888899999999999999998875 454 67889999999999887643 57889999999999998
Q ss_pred cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 411 PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 411 ~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|. ++++||+||+.+|+|++++++++|+++++ ++.
T Consensus 421 ~~-~~~lRi~p~~~~t~eei~~~l~~L~~~l~-~~~ 454 (457)
T 3tfu_A 421 PF-RNLVYAMPPYICTPAEITQITSAMVEVAR-LVG 454 (457)
T ss_dssp CB-TTEEEECCCTTCCHHHHHHHHHHHHHHHH-HC-
T ss_pred ec-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hhc
Confidence 86 57999999999999999999999999998 764
No 6
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=3.3e-61 Score=492.13 Aligned_cols=403 Identities=23% Similarity=0.408 Sum_probs=347.6
Q ss_pred CchHHHHHHHhhhcccCCCC-------CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc
Q 012138 37 SSSQQLINLEYEYSAHNYHP-------VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL 109 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~-------~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 109 (470)
.+++++.+.++++.++.|.. .|+++++++|+++||.+|++||||.++++++++||+||+|++++.++++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~ 89 (472)
T 3hmu_A 10 MPTAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPY 89 (472)
T ss_dssp SCHHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSC
T ss_pred cCHHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccc
Confidence 34677888888999887653 68999999999999999999999999999999999999999999999998763
Q ss_pred cC--CCCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc
Q 012138 110 SS--RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 110 ~~--~~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
.+ ..+.++...+|+++|++++ +.++|+|+|||+||++.|+++++.++. .+|. ++++.||+++++|||++..+++
T Consensus 90 ~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~-~~g~-~~~~~ii~~~~~yHg~t~~~~~ 167 (472)
T 3hmu_A 90 YNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQ-NKGQ-PEKTVIISRKNAYHGSTVASSA 167 (472)
T ss_dssp CCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHH-HTTC-TTCCEEEEETTCCCCSSHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHH-hcCC-CCCCEEEEEcCcCCCccHHhhh
Confidence 22 2356778899999999998 467899999999999999999987532 2222 3566899999999999999999
Q ss_pred ccCCcccccCCCCCCCCeeeecCC------C-----------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhH
Q 012138 186 MSCDNEAIRGFGPLLPGHLKVDFG------D-----------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~------d-----------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
+++.+.++..|. ..+++..++.+ + +++|++++++.+ +++++|++||++|++|.+.|+++|+
T Consensus 168 ~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l 246 (472)
T 3hmu_A 168 LGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYW 246 (472)
T ss_dssp HSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHH
T ss_pred ccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHH
Confidence 998887777777 66666666532 2 788999997543 4789999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC--cCCccCCCC
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ--PGEHGSTFG 325 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~--~~~~~~t~~ 325 (470)
++|+++|++||++||+||||+||||+|++++++++++.||+++|||+++||++|+|++++++++++.+. ...+++||+
T Consensus 247 ~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~ 326 (472)
T 3hmu_A 247 PEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYS 326 (472)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred HHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCC
Confidence 999999999999999999999999999988889999999999999999987339999999999999883 336788999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---------chhH
Q 012138 326 GNPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---------PVSA 395 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~~~~-~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---------~~~~ 395 (470)
+|+++++++.++|+.++++++.++++ ++++++++.|+++.. +| .+..+++.|+|+++++..+.. ....
T Consensus 327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~-~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~ 404 (472)
T 3hmu_A 327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTD-HP-LVGEAKIVGMMASIALTPNKASRAKFASEPGTIG 404 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGG-ST-TEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc-CC-CeEEEEecCceEEEEEecCccccccccchhHHHH
Confidence 99999999999999998888999999 999999999987744 54 788999999999998864310 0126
Q ss_pred HHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 396 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 396 ~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
..+++.|+++||++.+++ +++||+||+.+|++++++++++|+++++ ++.
T Consensus 405 ~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~-~~~ 453 (472)
T 3hmu_A 405 YICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLD-EAQ 453 (472)
T ss_dssp HHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 788999999999999876 9999999999999999999999999987 653
No 7
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=3.6e-60 Score=480.90 Aligned_cols=403 Identities=52% Similarity=0.927 Sum_probs=356.6
Q ss_pred CCCCchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC
Q 012138 34 PSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113 (470)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~ 113 (470)
+...+++++++.+.++..+.|.++|+++++++|+++||.+|++||||.++++..++||+||+|.+++.++++++.+.+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~ 114 (439)
T 2oat_A 35 QGPPTSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRA 114 (439)
T ss_dssp -CCCCHHHHHHHHHHHBCCCCCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTT
T ss_pred CCCCCHHHHHHHHHHhcccccCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCc
Confidence 33456888999888898888888899999999999999999999999999998999999999999999999887655444
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+..+...+++++|+++++.+++++++||++|++.++++++.|+++.+|.++|++.||+++++|||++..++.+++.+.++
T Consensus 115 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 194 (439)
T 2oat_A 115 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSY 194 (439)
T ss_dssp SEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcc
Confidence 56778999999999999999999999999999999999987665655555565689999999999999888887766666
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..|.|..+++..+|++|+++|+++++. +++++|++||++|++|.+.++++++++|+++|++||++||+||+|+||+++
T Consensus 195 ~~~~p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~ 272 (439)
T 2oat_A 195 DGFGPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART 272 (439)
T ss_dssp TTSCSCCTTEEEECSSCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred cCCCCCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccC
Confidence 777888788889999999999999953 379999999999999998879999999999999999999999999999999
Q ss_pred CCccccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012138 274 GRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAH 352 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~ 352 (470)
|.+++++++++.||+++|||++++| + |+|++++++++++.+....++++|++|+++++++.++|+.++++++.+++++
T Consensus 273 g~~~~~~~~~~~~Di~t~sK~l~~G~~-~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 351 (439)
T 2oat_A 273 GRWLAVDYENVRPDIVLLGKALSGGLY-PVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK 351 (439)
T ss_dssp SSSSGGGGGTCCCSEEEECGGGGTTSS-CCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CcchhHHHhCCCCcEEEecccccCCCC-CeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9988888899999999999999999 6 9999999999999998777889999999999999999999887889999999
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHH
Q 012138 353 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 353 ~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~ 432 (470)
+++++++.|+++. +| .+..+++.|.++++++.... ..+..++++.|+++||++.|.+++++||+|++.+|++++++
T Consensus 352 ~~~~l~~~L~~l~--~~-~~~~~~~~g~~~~v~l~~~~-~~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~ 427 (439)
T 2oat_A 352 LGIILRNELMKLP--SD-VVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRE 427 (439)
T ss_dssp HHHHHHHHHTTSC--TT-TEEEEEEETTEEEEEECCCS-SCCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHhc--CC-CcEEEEeeeeEEEEEEecCc-cHHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHH
Confidence 9999999998762 43 56677899999999886431 01477899999999999999878999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 012138 433 GSKALHDVLELD 444 (470)
Q Consensus 433 ~~~~l~~~l~~~ 444 (470)
++++|+++++ +
T Consensus 428 ~l~~l~~~l~-~ 438 (439)
T 2oat_A 428 SIEIINKTIL-S 438 (439)
T ss_dssp HHHHHHHHHH-T
T ss_pred HHHHHHHHHH-h
Confidence 9999999987 5
No 8
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=3.8e-60 Score=480.07 Aligned_cols=403 Identities=47% Similarity=0.854 Sum_probs=336.0
Q ss_pred CchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCC
Q 012138 37 SSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN 116 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~ 116 (470)
.+++++++..+++..+.|.++|+++++++|+++||.+|++||||.++++..++||+||++.+++.++++++.+.+..+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~ 106 (433)
T 1z7d_A 27 KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFS 106 (433)
T ss_dssp CCHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEE
T ss_pred ccHHHHHHHHHHhcccccCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCC
Confidence 45788889888888888888899999999999999999999999999888999999999999999999887654444556
Q ss_pred CcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 117 DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
+...+++++|+++++.++++|++||++|++.++++++.++++.+|.++|++.||+++++|||++..++.+++.+.++..|
T Consensus 107 ~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 186 (433)
T 1z7d_A 107 VPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186 (433)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccC
Confidence 67899999999999999999999999999999999887655555555665689999999999998888777765556667
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc
Q 012138 197 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276 (470)
Q Consensus 197 ~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~ 276 (470)
.|..+++..+|++|+++|+++++. +++++|++||++|++|.+.++++++++|+++|++||++||+||+|+||+++|.+
T Consensus 187 ~p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~ 264 (433)
T 1z7d_A 187 GPFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 264 (433)
T ss_dssp -----CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcc
Confidence 777777888999999999999952 379999999999999998779999999999999999999999999999999998
Q ss_pred cccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012138 277 LASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGE 355 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~ 355 (470)
++++.+++.||+++|||++++| + |+|++++++++++.+.+..++.+|++|+++++++.++|+.++++++.++++++++
T Consensus 265 ~~~~~~~~~~di~t~sK~l~~G~~-~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 343 (433)
T 1z7d_A 265 LCVHHYNVKPDVILLGKALSGGHY-PISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGG 343 (433)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTSS-CCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhHhcCCCCCEEEECccccCCCC-CeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8888889999999999999999 6 9999999999999998777889999999999999999999887789999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHH
Q 012138 356 ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 356 ~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
++++.|+++...+| .+..+++.|.++++++.... .+..++++.|+++||++.+++.+++|++|++.+|+++++++++
T Consensus 344 ~l~~~L~~l~~~~~-~~~~~~~~g~~~~i~~~~~~--~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~ 420 (433)
T 1z7d_A 344 PFLENLKRELKDSK-IVRDVRGKGLLCAIEFKNEL--VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTE 420 (433)
T ss_dssp HHHHHHHHHHTTCT-TEEEEEEETTEEEEEECTTT--CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CeEEEEeeeeEEEEEEccCh--hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHH
Confidence 99999998865564 56778899999999886431 1477899999999999998778899999999999999999999
Q ss_pred HHHHHHhcccC
Q 012138 436 ALHDVLELDLP 446 (470)
Q Consensus 436 ~l~~~l~~~~~ 446 (470)
+|+++++ ++.
T Consensus 421 ~l~~~l~-~~~ 430 (433)
T 1z7d_A 421 IIVKTVK-FFD 430 (433)
T ss_dssp HHHHHHH-HHC
T ss_pred HHHHHHH-HHH
Confidence 9999998 653
No 9
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=3.6e-60 Score=482.72 Aligned_cols=401 Identities=30% Similarity=0.522 Sum_probs=351.9
Q ss_pred CCCCCCchHHHHHHHhhhcccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc
Q 012138 32 TSPSSSSSQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS 110 (470)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~ 110 (470)
+..+.+++++++++.+++..+.+. +.|+++++++|+++||.+|++||||.++++.+++||+||+|++++.++++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~ 96 (451)
T 3oks_A 17 TAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHT 96 (451)
T ss_dssp SCSSCHHHHHHHHHHHHHBCTTBCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCC
T ss_pred cCCCCCcHHHHHHHHHhhccCCcCCCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccc
Confidence 345567789999999999888765 7899999999999999999999999999999999999999999999999887654
Q ss_pred C-CCCCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 111 S-RAFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 111 ~-~~~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
. ..+.++.+.+++++|++.++ .++|+|++||+||++.|+++++.+ ++++.||+++++|||++..++++
T Consensus 97 ~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~--------~g~~~ii~~~~~yhG~~~~~~~~ 168 (451)
T 3oks_A 97 CFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH--------THKPAVVAFDHAYHGRTNLTMAL 168 (451)
T ss_dssp TTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEETTCCCCSSHHHHHH
T ss_pred cCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHh--------cCCCeEEEEcCCcCCccHHHHHh
Confidence 3 23567778999999999884 478999999999999999999875 36679999999999999999999
Q ss_pred cCCc-ccccCCCCCCCCeeeecCC------------------CHHHHHHHHHhc--CCCeEEEEEccccCCCccccCChh
Q 012138 187 SCDN-EAIRGFGPLLPGHLKVDFG------------------DITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDG 245 (470)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~~~~~~------------------d~~~Le~~l~~~--~~~~~~vi~epi~n~~G~~~~~~~ 245 (470)
++.. .++..|.+..+++..++++ +++.+++.+++. ++++++|++||+++++|.+.++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~ 248 (451)
T 3oks_A 169 TAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADG 248 (451)
T ss_dssp CCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTT
T ss_pred cCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHH
Confidence 8864 6777788887787777776 244444555531 247899999999999999999999
Q ss_pred hHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCC
Q 012138 246 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG 325 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~ 325 (470)
|+++|+++|++||++||+||+|+|||++|.+++++++++.||+++|||++++|+ |+|++++++++++.+.+..+++||+
T Consensus 249 ~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~-~iG~v~~~~~~~~~~~~~~~~~t~~ 327 (451)
T 3oks_A 249 FLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSPHVSGLGGTYG 327 (451)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTS-SCEEEEEEHHHHTCSCTTSBCCSSS
T ss_pred HHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCc-ceEEEEECHHHHhhhcCCCcCCCCC
Confidence 999999999999999999999999999999888999999999999999999998 9999999999999998888999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC----CchhHHHHHHH
Q 012138 326 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----LPVSAYDICLK 401 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~ 401 (470)
+|+++++++.++|+.++++++.++++++++++++.|+++...+| .+..+++.|+|+++++.... ......++++.
T Consensus 328 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (451)
T 3oks_A 328 GNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDD-RIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAG 406 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHH
Confidence 99999999999999988888999999999999999999877776 78889999999999885311 02356789999
Q ss_pred HHHcCceeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 402 MKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 402 l~~~Gv~~~~~~~--~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|+++||++.|++. +++||+|++.+|+++|++++++|+++++
T Consensus 407 l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 407 AHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp HHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999988654 8999999999999999999999999987
No 10
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=5.3e-60 Score=481.62 Aligned_cols=401 Identities=30% Similarity=0.502 Sum_probs=351.2
Q ss_pred CCCCCchHHHHHHHhhhcccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 33 SPSSSSSQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
..+.+++++++++.++++.+.+. +.|+++++++|+++||.+|++||||.++++.+++||+||+|++++.++++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~ 100 (453)
T 4ffc_A 21 PLPGPRSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTC 100 (453)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTTCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCT
T ss_pred CCCCCCHHHHHHHHHHhcCCCcCCCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccc
Confidence 34556788999999999888764 78999999999999999999999999999999999999999999999999876543
Q ss_pred -CCCCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 -RAFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 -~~~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
..+..+.+.+++++|+++++ .++|+|+|||+||++.|+++++.+ ++++.||+++++|||++..+++++
T Consensus 101 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~--------~g~~~ii~~~~~yhg~~~~~~~~~ 172 (453)
T 4ffc_A 101 FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA--------TGRPAVVAFDNAYHGRTNLTMALT 172 (453)
T ss_dssp TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEETTCCCCSSHHHHHHC
T ss_pred cCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh--------cCCCEEEEEcCccCCcchHHHhhc
Confidence 23567778999999999985 478999999999999999999875 366799999999999999999998
Q ss_pred CCc-ccccCCCCCCCCeeeecCC----C-------------HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 188 CDN-EAIRGFGPLLPGHLKVDFG----D-------------ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 188 ~~~-~~~~~~~~~~~~~~~~~~~----d-------------~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
+.. .++..|.+..+++..++++ | +++|++.+.. +++++|++||+++++|.+.++++|+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~--~~~aavi~ep~~~~gG~~~~~~~~l~~ 250 (453)
T 4ffc_A 173 AKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA--QSLAAIIIEPIQGEGGFIVPAPGFLAT 250 (453)
T ss_dssp CCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG--GGEEEEEECSSBTTTTSBCCCTTHHHH
T ss_pred CCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC--CCEEEEEEcCCCCCCCcccCCHHHHHH
Confidence 865 6777788877777777665 4 2344444422 378999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHH
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPL 329 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~ 329 (470)
|+++|++||++||+||+|+|||++|.+++++++++.||+++|||++++|+ |+|++++++++++.+.+..+++||++|++
T Consensus 251 l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~-~~G~~~~~~~i~~~~~~~~~~~t~~~~~~ 329 (453)
T 4ffc_A 251 LTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGM-PLSAVTGRAELMDAVYAGGLGGTYGGNPV 329 (453)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTS-SCEEEEEEHHHHTTSCTTSSCCSSSSCHH
T ss_pred HHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCc-CeEEEEECHHHHhhhcccCcCCCCCcCHH
Confidence 99999999999999999999999999888899999999999999999998 99999999999999988889999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC----CchhHHHHHHHHHHc
Q 012138 330 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----LPVSAYDICLKMKER 405 (470)
Q Consensus 330 ~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~l~~~ 405 (470)
+++++.++|+.++++++.++++++++++++.|+++...+| .+..+++.|+|+++++.... ......++++.|+++
T Consensus 330 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (453)
T 4ffc_A 330 TCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVD-IIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ 408 (453)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCS-SEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhC
Confidence 9999999999988888999999999999999999887776 78889999999999885411 023577899999999
Q ss_pred CceeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 406 GILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 406 Gv~~~~~~~--~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
||++.|++. +++||+|++.+|++++++++++|+++++ ++.
T Consensus 409 Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~ 450 (453)
T 4ffc_A 409 GVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIR-AKA 450 (453)
T ss_dssp TEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HHC
T ss_pred CCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 999988754 8999999999999999999999999998 764
No 11
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=1.8e-58 Score=471.57 Aligned_cols=403 Identities=24% Similarity=0.397 Sum_probs=345.3
Q ss_pred HHHHHHHhhhcccCCC---------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc
Q 012138 40 QQLINLEYEYSAHNYH---------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS 110 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~---------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~ 110 (470)
+++.+.++++.++.|. +.|+++++++|+++||.+|++||||+++++.+++||+||+|.+++.++++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~ 86 (460)
T 3gju_A 7 NELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYY 86 (460)
T ss_dssp SCHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccc
Confidence 3467777888887653 3459999999999999999999999999988999999999999999999886632
Q ss_pred C--CCCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 111 S--RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 111 ~--~~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
+ ..+.++.+.+++++|++++ +.++|+|++||++|++.|+++++.++.. +|. ++++.||+++++|||++..++++
T Consensus 87 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~-~g~-~~~~~vi~~~~~yhg~~~~~~~~ 164 (460)
T 3gju_A 87 HAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNV-LGR-PEKKKIISRWRGYHGSGVMTGSL 164 (460)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHH-TTC-TTCCEEEEETTCCCCSSHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHh-cCC-CCCCEEEEECCCcCCCCHHHhhc
Confidence 2 2345677899999999987 5678999999999999999999875321 222 35669999999999999999999
Q ss_pred cCCcccccCCCCCCCCeeeec--C----CC------------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhH
Q 012138 187 SCDNEAIRGFGPLLPGHLKVD--F----GD------------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~--~----~d------------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
++.+.++..|.+..+++..++ + +| +++||+++++.+ +++++|++||++|++|.+.++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l 244 (460)
T 3gju_A 165 TGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYW 244 (460)
T ss_dssp CCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHH
T ss_pred cCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHH
Confidence 988888888888777766555 2 33 689999997532 3789999999999999988899999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhc-------CcCCc
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI-------QPGEH 320 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~-------~~~~~ 320 (470)
++|+++|++||++||+||||+|||++|+.++++++++.||+++|||+++||+.|+|++++++++++.+ ....+
T Consensus 245 ~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~ 324 (460)
T 3gju_A 245 EKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGH 324 (460)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSC
T ss_pred HHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhccccccccccc
Confidence 99999999999999999999999999998888899999999999999999833999999999999988 34478
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--------c
Q 012138 321 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------P 392 (470)
Q Consensus 321 ~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~ 392 (470)
++||++|+++++++.++|+.++++++.++++++.+++++.|.+....+| .+..+++.|.++++++..+.. .
T Consensus 325 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 403 (460)
T 3gju_A 325 GWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHK-NVGEVRGDGMLAAVEFVADKDDRVFFDASQ 403 (460)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTST-TEEEEEEETTEEEEEECSBTTTTBCCCGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEeeeeEEEEEEEccCccccccccchH
Confidence 8999999999999999999998888999999999999999987766665 788899999999998864320 0
Q ss_pred hhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 393 VSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 393 ~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
....++++.|+++||++.+++ .+++||+||+.+|++++++++++|+++++ ++.
T Consensus 404 ~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~ 457 (460)
T 3gju_A 404 KIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVK-SVF 457 (460)
T ss_dssp CHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 126688999999999998875 48999999999999999999999999998 653
No 12
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=1.2e-58 Score=471.35 Aligned_cols=403 Identities=27% Similarity=0.471 Sum_probs=322.3
Q ss_pred HHHHHHHhhhcccCCC------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-C
Q 012138 40 QQLINLEYEYSAHNYH------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-R 112 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~ 112 (470)
+++.+.+++|.++.+. +.|+++++++|+++||.+|++||||.+++++.++||+||+|.+++.+++++..+++ .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~ 82 (448)
T 3dod_A 3 HDLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL 82 (448)
T ss_dssp CHHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS
T ss_pred hHHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc
Confidence 4677888888887654 35899999999999999999999999999999999999999999999998875532 3
Q ss_pred CCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 113 AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
.+.++...+++++|++++ +.++|+|++||++|++.|+++++.+... .|. ++++.||+++++|||.+..++++++.+
T Consensus 83 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~-~G~-~~~~~vi~~~~~yhg~~~~~~~~~~~~ 160 (448)
T 3dod_A 83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKN-IGK-PEKQKFIAMKNGYHGDTIGAVSVGSIE 160 (448)
T ss_dssp SSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHH-TTC-TTCCEEEEEC-----------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHh-hCC-CCCCEEEEECCCCCCccHHHHHhcCCc
Confidence 455677899999999988 4679999999999999999999874211 111 125699999999999999999998877
Q ss_pred ccccCCCCCCCCeeeecCCC----------------HHHHHHHHHhcCCCeEEEEEcccc-CCCccccCChhhHHHHHHH
Q 012138 191 EAIRGFGPLLPGHLKVDFGD----------------ITALEKIFKESGDQIAGFLFEPIQ-GEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d----------------~~~Le~~l~~~~~~~~~vi~epi~-n~~G~~~~~~~~l~~l~~l 253 (470)
.++..|.+..+++..+++++ +++||++++++++++++|++||++ |++|.+.++++++++|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l 240 (448)
T 3dod_A 161 LFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVREL 240 (448)
T ss_dssp ------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHH
T ss_pred cccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHH
Confidence 77777777777777776654 899999998444479999999998 9999998899999999999
Q ss_pred HHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-------CCccCCCCC
Q 012138 254 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHGSTFGG 326 (470)
Q Consensus 254 ~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-------~~~~~t~~~ 326 (470)
|++||++||+||+|+|||++|..++++++++.||+++|||++++|++|+|++++++++++.+.. ..+++||++
T Consensus 241 ~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 320 (448)
T 3dod_A 241 CTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTG 320 (448)
T ss_dssp HHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTT
T ss_pred HHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCc
Confidence 9999999999999999999999888899999999999999999994499999999999999876 668899999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCc------h--hHHHH
Q 012138 327 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP------V--SAYDI 398 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~------~--~~~~~ 398 (470)
++++++++.++|+.++++++.++++++++++++.|++ ...+| .+..+++.|.++++++..+... . .+.++
T Consensus 321 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (448)
T 3dod_A 321 NQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALP-HVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKV 398 (448)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTST-TEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCC-CeEEEEeeeEEEEEEEccCcccccccchhhHHHHHH
Confidence 9999999999999988888999999999999999988 44554 6788899999999988643210 0 14789
Q ss_pred HHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCC
Q 012138 399 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 399 ~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
++.|+++||++.|++ +++||+|++.+|+++|++++++|+++++ ++..+
T Consensus 399 ~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~~~ 446 (448)
T 3dod_A 399 SLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMVAIMKQAIH-EVTSL 446 (448)
T ss_dssp HHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHhcc
Confidence 999999999999874 8999999999999999999999999998 76543
No 13
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=9e-58 Score=465.63 Aligned_cols=401 Identities=28% Similarity=0.475 Sum_probs=344.5
Q ss_pred chHHHHHHHhhhccc---CC-CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC
Q 012138 38 SSQQLINLEYEYSAH---NY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~---~~-~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~ 113 (470)
+++++.+.+++|.++ .| .+.|+++++++|+++||.+|++||||.++++.+++||+||+|.+++.++++++.+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~ 87 (452)
T 3n5m_A 8 QTDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS 87 (452)
T ss_dssp HHHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTT
T ss_pred cHHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccc
Confidence 467788889999888 44 35799999999999999999999999999999999999999999999999887663334
Q ss_pred CCCCcHHHHHHHHhhhhCCC-eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 114 FYNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~-~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
+.++.+.+++++|++.++.+ .|+|++||+||++.|+++++.++.. ++. ++++.||+++++|||.+..++.+++.+.+
T Consensus 88 ~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~-~g~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 165 (452)
T 3n5m_A 88 QSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQ-KGE-PHRYKFMSRYRGYHGNTMATMAATGQAQR 165 (452)
T ss_dssp SEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHT-TTC-TTCCEEEEETTCCCCSSHHHHHSCCCGGG
T ss_pred cCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHh-cCC-CCCCEEEEECCCcCCCCHHHHhcCCchhh
Confidence 56677899999999988532 3999999999999999999864211 111 24568999999999999999999988777
Q ss_pred ccCCCCCCCCeeeec--------CCC---------HHHHHHHHH-hcCCCeEEEEEccc-cCCCccccCChhhHHHHHHH
Q 012138 193 IRGFGPLLPGHLKVD--------FGD---------ITALEKIFK-ESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~--------~~d---------~~~Le~~l~-~~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l 253 (470)
+..+.+..+++..++ ++| +++||++++ .+++++++|++||+ +| +|.++|+++++++|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l 244 (452)
T 3n5m_A 166 RYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHET 244 (452)
T ss_dssp TTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHH
T ss_pred ccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHH
Confidence 777777766655554 355 899999998 22247999999998 89 99999899999999999
Q ss_pred HHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCc------CCccCCCCC
Q 012138 254 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQP------GEHGSTFGG 326 (470)
Q Consensus 254 ~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~------~~~~~t~~~ 326 (470)
|++||++||+||||+|||++|.+++++++++.||+++|||++++| + |+|++++++++++.+.. ..+++||++
T Consensus 245 ~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~-~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~ 323 (452)
T 3n5m_A 245 CQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYL-PLSATAVKREIYEAFKGKGEYEFFRHINTFGG 323 (452)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSS-CCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTT
T ss_pred HHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCc-ceEEEEECHHHHHHHhhccCCCCccccCCCCC
Confidence 999999999999999999999988899999999999999999999 6 99999999999998843 247789999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC------chhHHHHHH
Q 012138 327 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL------PVSAYDICL 400 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~ 400 (470)
|+++++++.++|+.++++++.++++++++++++.|+++...+| .+..+++.|.++++++..+.. .....++++
T Consensus 324 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 402 (452)
T 3n5m_A 324 NPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHP-LVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVN 402 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHH
Confidence 9999999999999988888999999999999999999877775 788899999999998743210 012457899
Q ss_pred HHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 401 KMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 401 ~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
.|+++||++.|++ ++++||+|++.+|+++|++++++|+++++ +
T Consensus 403 ~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~ 451 (452)
T 3n5m_A 403 ACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAME-R 451 (452)
T ss_dssp HHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT-T
T ss_pred HHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-h
Confidence 9999999998876 68999999999999999999999999987 5
No 14
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=1.3e-58 Score=472.51 Aligned_cols=402 Identities=25% Similarity=0.423 Sum_probs=328.7
Q ss_pred hHHHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
+.++.+.++++.++.+. ..|+++++++|+++||.+|++||||+++++.+++||+||+|.+++.++++++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~ 86 (459)
T 4a6r_A 7 TSQWRELDAAHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYN 86 (459)
T ss_dssp ---------------------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHhhhhccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccc
Confidence 45667777777777653 25899999999999999999999999999999999999999999999999876322
Q ss_pred --CCCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 --RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 --~~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
..+.++.+.+++++|++++ +.++|+|++||++|++.|+++++.++. .+|. ++++.||+++++|||.+..+.+++
T Consensus 87 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~-~~g~-~~~~~vi~~~~~yhg~~~~~~~~~ 164 (459)
T 4a6r_A 87 TFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWD-VQGK-PEKKTLIGRWNGYHGSTIGGASLG 164 (459)
T ss_dssp TTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHH-HTTC-TTCCEEEEETTCCCCSSHHHHHHS
T ss_pred cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHH-hcCC-CCCCEEEEECCCcCCccHHHHhhc
Confidence 2456778899999999988 468999999999999999999987532 2222 355699999999999999999999
Q ss_pred CCcccccCCCCCCCCeeeecCC---------C--------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHH
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFG---------D--------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~---------d--------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
+.+.++..|.+..+++..++.+ | +++||+++++.+ +++++|++||+++++|.+.++++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~ 244 (459)
T 4a6r_A 165 GMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPE 244 (459)
T ss_dssp CCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHH
T ss_pred CChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHH
Confidence 8888877788877776666532 2 789999997533 478999999999999999989999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC---cCCccCCCCC
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ---PGEHGSTFGG 326 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~---~~~~~~t~~~ 326 (470)
|+++|++||++||+||||+|||++|.+++++++++.||+++|||+++||+.|+|++++++++++.+. ...+++||++
T Consensus 245 l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~ 324 (459)
T 4a6r_A 245 IERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSG 324 (459)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCS
T ss_pred HHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCC
Confidence 9999999999999999999999999988888899999999999999987339999999999999886 5567889999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHH-HHHHhhCCCceEEEeccceeEEEEeccCCC--------chhHH
Q 012138 327 NPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHL-FKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------PVSAY 396 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~~~~~~~~~-~~~~~l~~~L-~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~~~~ 396 (470)
|+++++++.++|+.++++++.++++ ++++++++.| +.+ ..+| .+..+++.|+|+++++..+.. .....
T Consensus 325 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (459)
T 4a6r_A 325 HPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETF-SRFE-HVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGT 402 (459)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHH-TTCT-TEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-hcCC-CeEEEEEEEEEEEEEEecCccccccccchHHHHH
Confidence 9999999999999988888999999 9999999999 555 4454 788899999999998864320 11267
Q ss_pred HHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 397 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 397 ~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++++.|+++||++.+++ +++||+||+.+|++++++++++|+++++ ++.
T Consensus 403 ~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~ 450 (459)
T 4a6r_A 403 LCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAERCLE-EFE 450 (459)
T ss_dssp HHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 89999999999999875 8999999999999999999999999998 654
No 15
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=3.5e-57 Score=453.22 Aligned_cols=387 Identities=31% Similarity=0.552 Sum_probs=347.6
Q ss_pred HHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHH
Q 012138 45 LEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAE 124 (470)
Q Consensus 45 ~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (470)
.+.+|..+.|.+.|+++++++|+++||.+|++||||.++++.+++||+||++.+++.++++...+.+..+..+.+.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (395)
T 3nx3_A 6 KEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAK 85 (395)
T ss_dssp --CCSCBCGGGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHH
T ss_pred hhhhhhhhccCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHH
Confidence 34567777788899999999999999999999999999999999999999999999999988776555566788899999
Q ss_pred HHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCee
Q 012138 125 RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL 204 (470)
Q Consensus 125 ~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (470)
+++++++.+++++++||++|++.++++++.+. +.+| ++++.||+++++|||.+..+..+++.+.++..+.+...++.
T Consensus 86 ~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~-~~~g--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (395)
T 3nx3_A 86 NLAKASALERVFFTNSGTESIEGAMKTARKYA-FNKG--VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVK 162 (395)
T ss_dssp HHHHHHTCSEEEEESSHHHHHHHHHHHHHHHH-HHTT--CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEE
T ss_pred HHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHh-hccC--CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcE
Confidence 99999999999999999999999999887642 1122 24568999999999999999998887777777778778889
Q ss_pred eecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC
Q 012138 205 KVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV 284 (470)
Q Consensus 205 ~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~ 284 (470)
.++++|+++|++++++ ++++|+++|++|++|.+.++++++++|.++|++||++||+||+|+|||++|..++.+++++
T Consensus 163 ~~~~~d~~~l~~~l~~---~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~ 239 (395)
T 3nx3_A 163 FAKYNDISSVEKLVNE---KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI 239 (395)
T ss_dssp EECTTCHHHHHTTCCT---TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred EeCCCCHHHHHHhccC---CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCC
Confidence 9999999999999874 7999999999999999988999999999999999999999999999999998888888999
Q ss_pred CcceeeccccccCCCcceeEEEecHHH-HhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012138 285 RPDMVILGKALGGGVIPVSAVLADKEV-MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 285 ~pdi~s~sK~l~gG~~~ig~v~~~~~~-~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 363 (470)
.||+++|||++++|+ |+|++++++++ ++.+.+..++.+|+.++++++++.++|+.++++++.++++++.+++++.|++
T Consensus 240 ~~d~~t~sK~~~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~ 318 (395)
T 3nx3_A 240 LPDIMTSAKALGCGL-SVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDE 318 (395)
T ss_dssp CCSEEEECGGGTTTS-CCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecccccCCC-ceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 99999999999 8889887788999999999999999999887788999999999999999999
Q ss_pred HHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 364 IQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 364 l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+...+| .+..+++.|.++++.+.... +..++++.|+++||++.+++.+++||+|++.+|++++++++++|+++++
T Consensus 319 ~~~~~~-~~~~~~~~g~~~~~~~~~~~---~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 319 LINEFD-FCKKRKGLGFMQGLSLDKSV---KVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp HHHHCT-TEEEEEEETTEEEEEECTTS---CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCC-CeEEEEeEEEEEEEEeCCcc---hHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 877775 67788899999999886543 5788999999999999998889999999999999999999999999987
No 16
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=8.9e-59 Score=498.79 Aligned_cols=400 Identities=21% Similarity=0.312 Sum_probs=323.4
Q ss_pred HHHHhhhcccCCCC-------CceEEEeecCC--EEEeCCCC----eEEeccCCcccccCCCC-CHHHHHHHHHHHHHcc
Q 012138 43 INLEYEYSAHNYHP-------VPIVFSQAKGS--SIWDPEGN----KYLDFLSAYSAVNQGHC-HPKIMKALQEQAEKLT 108 (470)
Q Consensus 43 ~~~~~~~~~~~~~~-------~p~~~~~~~g~--~~~d~~G~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~ 108 (470)
.+.+++++||.|.. .|+++++++|. |+||.||+ +|||++++++++++||+ ||+|.+|+.+|++++.
T Consensus 335 ~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~ 414 (831)
T 4a0g_A 335 AKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFG 414 (831)
T ss_dssp HHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc
Confidence 34455677776532 37899999995 99999999 99999999999999999 9999999999999988
Q ss_pred ccCC-CCCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHH-HhchhcccCC-------CCCcEEEEEccCc
Q 012138 109 LSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLAR-KWGYVKKKFS-------IDEAIIVSCCGCF 176 (470)
Q Consensus 109 ~~~~-~~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~-~~~~~~~~~~-------~g~~~ii~~~~~y 176 (470)
+... .+.++...+|+++|+++.+ .++|+|++||+|||+.|||+++ .|+ ..+|.+ +++..||+++++|
T Consensus 415 h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~-~~~g~~~~~~~~~~~r~~iI~~~~sy 493 (831)
T 4a0g_A 415 HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFC-VDHNFCEATEEEKHIVVKVIALRGSY 493 (831)
T ss_dssp SCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHH-HTTTC---------CCEEEEEETTCC
T ss_pred cccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHH-hhcCCCccccccccCccEEEEecCCc
Confidence 7642 3567888999999999986 6799999999999999999994 443 223321 1577899999999
Q ss_pred cccccchhcccCCccccc--------CCCCCC--------CCeeee--c------------CCCH---------------
Q 012138 177 HGRTLAAISMSCDNEAIR--------GFGPLL--------PGHLKV--D------------FGDI--------------- 211 (470)
Q Consensus 177 hg~~~~~~~~~~~~~~~~--------~~~~~~--------~~~~~~--~------------~~d~--------------- 211 (470)
||+|.+++++++...++. ++.++. +++..+ | |++.
T Consensus 494 HG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (831)
T 4a0g_A 494 HGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLAR 573 (831)
T ss_dssp CCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHH
T ss_pred ccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhH
Confidence 999999999998654433 111111 111111 2 2332
Q ss_pred ---HHHHHHHHh-----cCCCeEEEEEccc-cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC
Q 012138 212 ---TALEKIFKE-----SGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 282 (470)
Q Consensus 212 ---~~Le~~l~~-----~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~ 282 (470)
++|+++|++ .++++++||+||+ ++.+|.+.++++|+++|+++|++||++||+||||+||||+|++|+++++
T Consensus 574 ~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~ 653 (831)
T 4a0g_A 574 IYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653 (831)
T ss_dssp HHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhc
Confidence 567777763 2457999999996 9999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeccccccCCCcceeEEEecHHHHhhcCcC------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012138 283 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 356 (470)
Q Consensus 283 ~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~ 356 (470)
++.||++||||+++||++|+|++++++++++.+... .+++||++||++|+++.++|+.++++++.+++++++++
T Consensus 654 gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~ 733 (831)
T 4a0g_A 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKT 733 (831)
T ss_dssp SSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSB
T ss_pred CCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999955999999999999988653 48899999999999999999999887777777665555
Q ss_pred HHH----HHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCH
Q 012138 357 LRQ----HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISS 427 (470)
Q Consensus 357 l~~----~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~ 427 (470)
+++ .+.+....+| .+..+++.|+|+++++..+.. ...+.++++.|+++||++.|. ++.+||+||+.+|+
T Consensus 734 l~~~l~~~l~~~l~~~~-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~-g~~lrl~pp~~~t~ 811 (831)
T 4a0g_A 734 LRELWDEELVQQISSHS-AVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL-GNVIYLMCGPCTSP 811 (831)
T ss_dssp BCCCSCHHHHHHHHHST-TEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB-TTEEEEECCTTCCH
T ss_pred HHHHHHHHHHHHHhhCC-CceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec-CCEEEEECCCCCCH
Confidence 432 3433334454 789999999999999864311 124678999999999999987 58999999999999
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 012138 428 NELQEGSKALHDVLELDLP 446 (470)
Q Consensus 428 e~i~~~~~~l~~~l~~~~~ 446 (470)
++|++++++|.++++ ++.
T Consensus 812 e~id~~~~~l~~~l~-~l~ 829 (831)
T 4a0g_A 812 EICRRLLTKLYKRLG-EFN 829 (831)
T ss_dssp HHHHHHHHHHHHHHT-TTC
T ss_pred HHHHHHHHHHHHHHH-Hhc
Confidence 999999999999998 764
No 17
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=6.8e-57 Score=454.62 Aligned_cols=398 Identities=32% Similarity=0.549 Sum_probs=329.7
Q ss_pred hHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCc
Q 012138 39 SQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDK 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 118 (470)
+.++++.+.++..+.|.+.|+++++++|+++||.+|++||||.++++..++||+||++.+++.+++++..+.+..+..+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~ 100 (420)
T 2pb2_A 21 TAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEP 100 (420)
T ss_dssp ------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHH
T ss_pred HHHHHHHHHHhhhccccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHH
Confidence 34566777788888888889999999999999999999999999998899999999999999999988765444456678
Q ss_pred HHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCC
Q 012138 119 FPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP 198 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 198 (470)
..+++++|+++++.+++++++||++|++.++++++.+... ++. ++++.||+++++|||.+..++.+++.+.++.+|.|
T Consensus 101 ~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~-~~~-~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p 178 (420)
T 2pb2_A 101 ALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACV-RHS-PFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGP 178 (420)
T ss_dssp HHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHH-HTC-TTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSS
T ss_pred HHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhh-ccC-CCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCC
Confidence 8999999999999999999999999999999988764322 111 35558999999999999888877776656667778
Q ss_pred CCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc
Q 012138 199 LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278 (470)
Q Consensus 199 ~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~ 278 (470)
..+++..++++|+++|++++++ ++++|++||++|++|.+.++++++++|+++|++||++||+||+|+||+++|+.++
T Consensus 179 ~~~~~~~~~~~d~~~le~~i~~---~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~ 255 (420)
T 2pb2_A 179 KPADIIHVPFNDLHAVKAVMDD---HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFA 255 (420)
T ss_dssp CCSCEEEECTTCHHHHHHHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSH
T ss_pred CCCCeEEecCCCHHHHHHHhcc---CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHH
Confidence 8788888999999999999975 8999999999999997666999999999999999999999999999999998877
Q ss_pred cccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012138 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 358 (470)
Q Consensus 279 ~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~ 358 (470)
++.+++.||+++|||++++|+ |+|++++++++++.+....++.+|++|+++++++.++|+.++++++.++++++++++.
T Consensus 256 ~~~~~~~~diit~sK~l~~G~-~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~ 334 (420)
T 2pb2_A 256 YMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFV 334 (420)
T ss_dssp HHHHTCCCSEEEECGGGGTTS-CCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEecccccCCC-ceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777888999999999999998 9999999999999888766788999999999999999999887789999999999999
Q ss_pred HHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 359 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+.|+++...+| .+..+++.|.++++++.... ..+..++++.|+++||++.+++++++||+||+.+|++++++++++|+
T Consensus 335 ~~L~~~~~~~~-~~~~~~~~g~~~~v~~~~~~-~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~ 412 (420)
T 2pb2_A 335 QHLQAIDEQFD-IFSDIRGMGLLIGAELKPKY-KGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412 (420)
T ss_dssp HHHHHHHHHHC-CEEEEEEETTEEEEEECGGG-TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CeEEEEecceEEEEEECCCc-hHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99988754454 56677889999999875421 01467899999999999998878999999999999999999999999
Q ss_pred HHHhccc
Q 012138 439 DVLELDL 445 (470)
Q Consensus 439 ~~l~~~~ 445 (470)
++++ ++
T Consensus 413 ~~l~-~~ 418 (420)
T 2pb2_A 413 QAVG-KV 418 (420)
T ss_dssp HHHH-HH
T ss_pred HHHH-HH
Confidence 9987 54
No 18
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.8e-55 Score=446.34 Aligned_cols=395 Identities=27% Similarity=0.411 Sum_probs=334.4
Q ss_pred CCchHHHHHHHhhhcccCC-------C----CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHH
Q 012138 36 SSSSQQLINLEYEYSAHNY-------H----PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQA 104 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-------~----~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~ 104 (470)
.+++++++++.++++.... . +.|+++++++|+++||.+|++||||.++++++++||+||+|.+++.+++
T Consensus 5 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~ 84 (434)
T 3l44_A 5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA 84 (434)
T ss_dssp CHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHH
Confidence 3568889999998876432 1 5799999999999999999999999999999999999999999999999
Q ss_pred HHccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch
Q 012138 105 EKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 183 (470)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~ 183 (470)
++... ..+..+...++++++++.+ +.++++|++||++|++.|+++++.+ ++++.||+++++|||++..+
T Consensus 85 ~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~--------~~~~~vi~~~~~yhg~~~~~ 154 (434)
T 3l44_A 85 ENGVL--YGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAY--------TGRTKIMKFAGCYHGHSDLV 154 (434)
T ss_dssp HHCSC--CSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEETTCCCCSSGGG
T ss_pred HhCcC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHh--------hCCCEEEEEcCccCCCcHHH
Confidence 87532 2355677889999999987 6789999999999999999998864 25568999999999999988
Q ss_pred hcccCCccccc--CCCCCC-----CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh
Q 012138 184 ISMSCDNEAIR--GFGPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 256 (470)
Q Consensus 184 ~~~~~~~~~~~--~~~~~~-----~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~ 256 (470)
+..++...... +..+.. +++..+|++|+++|+++++++++++++|++||++|++|.+.|+++++++|+++|++
T Consensus 155 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 234 (434)
T 3l44_A 155 LVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHE 234 (434)
T ss_dssp GBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHT
T ss_pred HhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHH
Confidence 87766432211 111111 25678899999999999986545799999999999999999999999999999999
Q ss_pred cCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc---CCccCCCCCCHHHHHH
Q 012138 257 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGGNPLASAV 333 (470)
Q Consensus 257 ~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aa 333 (470)
||++||+||+|+|| ++|.+++++++++.||+++|||++++|+ |+|++++++++++.+.. ..+++||++|++++++
T Consensus 235 ~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aa 312 (434)
T 3l44_A 235 AGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGGL-PIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMAS 312 (434)
T ss_dssp TTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHH
T ss_pred cCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcCCc-CeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHH
Confidence 99999999999999 9998888888999999999999999998 99999999999998875 3578899999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHH
Q 012138 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMK 403 (470)
Q Consensus 334 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~ 403 (470)
+.++|+.++++++.++++++++++++.|+++...++ .+..+++.|.++++++..... .....++++.|+
T Consensus 313 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (434)
T 3l44_A 313 GIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHN-IDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML 391 (434)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHH
Confidence 999999988888999999999999999999876664 567789999999998843210 123467899999
Q ss_pred HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 404 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 404 ~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++||++.+++.+.+|++ +.+|++++++++++|+++++ +++
T Consensus 392 ~~Gv~v~~~~~~~~rl~--~~~t~e~i~~~l~~l~~~l~-~~~ 431 (434)
T 3l44_A 392 QEGVNLAPSKYEAWFLT--TEHTKEDIEYTIEAVGRAFA-ALA 431 (434)
T ss_dssp HTTEECCSSTTCCEECC--TTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred HCCeEEeecCCCcEEEe--cccCHHHHHHHHHHHHHHHH-HHH
Confidence 99999999887888885 78999999999999999998 764
No 19
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=2.7e-55 Score=438.97 Aligned_cols=390 Identities=51% Similarity=0.902 Sum_probs=350.3
Q ss_pred HHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHH
Q 012138 41 QLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFP 120 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 120 (470)
++++.++++..+.|.+.|+++++++|+++||.+|++||||.+++++.++||+||++.+++.++++...+.+..+..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 81 (392)
T 3ruy_A 2 DIIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLG 81 (392)
T ss_dssp CHHHHHHHHBCTTCCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHH
T ss_pred hHHHHHHhhhhccCCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHH
Confidence 46777888899999999999999999999999999999999999999999999999999999998877665556678899
Q ss_pred HHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC
Q 012138 121 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL 200 (470)
Q Consensus 121 ~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 200 (470)
+++++++++++.+++++++||++|++.++++++.++++.++.+++++.|++..++|||.+..+..+++.+.++..+.+..
T Consensus 82 ~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (392)
T 3ruy_A 82 PWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPML 161 (392)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCC
T ss_pred HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCC
Confidence 99999999999999999999999999999988775445555556677999999999999999988888777888888888
Q ss_pred CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccc
Q 012138 201 PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 280 (470)
Q Consensus 201 ~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~ 280 (470)
+++..++++|+++|+++++. ++++|++++++||+|.++|+++++++|.++|++||++||+||+|++|+++|..+..+
T Consensus 162 ~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~ 238 (392)
T 3ruy_A 162 PGIIVIPYGDLEALKAAITP---NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACD 238 (392)
T ss_dssp SSEEEECTTCHHHHHHHCCT---TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGG
T ss_pred CCCeeeCcccHHHHHHHhcc---CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhh
Confidence 88889999999999999974 899999999999999999888889999999999999999999999999999888888
Q ss_pred cCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012138 281 WEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 359 (470)
Q Consensus 281 ~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~ 359 (470)
.+++.||+++|||+++|| + |+|++++++++++.+....++.+|+.++++++++.++++.++.+++.++++++++++.+
T Consensus 239 ~~~~~~d~~~~SK~l~gG~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~ 317 (392)
T 3ruy_A 239 WDNVTPDMYILGKALGGGVF-PISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVG 317 (392)
T ss_dssp GGTCCCSEEEECGGGGTTTS-CCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEchhhhCChh-hhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 889999999999999999 6 99999999999999988888889999999999999999988778899999999999999
Q ss_pred HHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 360 HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 360 ~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.|+++.. +.+...++.|.+++|.+.. +..++++.|+++||.+.+++.+++|++|++.+|++++++++++|++
T Consensus 318 ~L~~~~~---~~~~~~~~~g~~~~~~~~~-----~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 389 (392)
T 3ruy_A 318 QLKEIDN---PMITEVRGKGLFIGIELNE-----PARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKA 389 (392)
T ss_dssp HHTTCCC---TTEEEEEEETTEEEEEESS-----CSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcC---CCceEEEeeeeEEEEEEcc-----hHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8877532 2567778899999998754 4568999999999999999889999999999999999999999998
Q ss_pred HHh
Q 012138 440 VLE 442 (470)
Q Consensus 440 ~l~ 442 (470)
+++
T Consensus 390 ~l~ 392 (392)
T 3ruy_A 390 VLS 392 (392)
T ss_dssp HHC
T ss_pred HhC
Confidence 874
No 20
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=3.8e-55 Score=443.45 Aligned_cols=392 Identities=29% Similarity=0.475 Sum_probs=313.8
Q ss_pred hcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHh
Q 012138 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLT 127 (470)
Q Consensus 49 ~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~ 127 (470)
+.++.|.+.|+++++++|+++||.+|++||||.++++.+++||+||+|.+++.++++...+++. .+..+.+.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la 82 (430)
T 3i4j_A 3 NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLA 82 (430)
T ss_dssp CBCCSSSSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHH
T ss_pred ccccCCCCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 4556667789999999999999999999999999998899999999999999999988765443 455677899999999
Q ss_pred hhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC--Ce
Q 012138 128 SMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP--GH 203 (470)
Q Consensus 128 ~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~ 203 (470)
+.++ .++|++++||+||++.++++++.+. +.+|. ++++.||+++++|||.+..+..+++.+.++..+.+..+ ++
T Consensus 83 ~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~-~~~g~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (430)
T 3i4j_A 83 RFVGLPTFRFWAVSGGSEATESAVKLARQYH-VERGE-PGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAW 160 (430)
T ss_dssp HHTTCTTCEEEEESSHHHHHHHHHHHHHHHH-HHTTC-TTCCEEEEETTC-------------------------CGGGS
T ss_pred HhCCCCCCEEEEeCcHHHHHHHHHHHHHHHH-HhcCC-CCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCc
Confidence 9884 6799999999999999999888642 22222 24568999999999999988888877666666777666 67
Q ss_pred eeecCCC--------HHHHHHHHHhcC-CCeEEEEEccccC-CCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 204 LKVDFGD--------ITALEKIFKESG-DQIAGFLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 204 ~~~~~~d--------~~~Le~~l~~~~-~~~~~vi~epi~n-~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..+++++ +++||+++++.+ +++++|++||++| ++|.+.++++++++|+++|++||++||+||+|+||+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~ 240 (430)
T 3i4j_A 161 PKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRC 240 (430)
T ss_dssp CEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred eEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence 7777764 489999998533 3789999999999 99998889999999999999999999999999999999
Q ss_pred CCccccccC-CCCcceeeccccccCC-CcceeEEEecHHHHhhcCcC----CccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 274 GRMLASDWE-EVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPG----EHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 274 G~~~~~~~~-~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
|..++++++ ++.||+++|||++++| + |+|++++++++++.+... .++++|++|+++++++.++|+.++++++.
T Consensus 241 g~~~~~~~~~~~~~di~t~sK~l~~G~~-r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 319 (430)
T 3i4j_A 241 GSPLALSRWSGVTPDIAVLGKGLAAGYA-PLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLT 319 (430)
T ss_dssp SSSSGGGGTTTCCCSEEEECGGGTTTSS-CCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred cchhhhhhhcCCCCcEEEEcccccCCcc-ccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHH
Confidence 998888989 9999999999999999 7 999999999999988753 67889999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC------chhHHHHHHHHHHcCceeccC-------CC
Q 012138 348 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL------PVSAYDICLKMKERGILAKPT-------HD 414 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~l~~~Gv~~~~~-------~~ 414 (470)
++++++++++++.|+++...+| .+..+++.|.|+++++..... ...+.++++.|+++||++.|+ ++
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~ 398 (430)
T 3i4j_A 320 GAAKERGAQLLAGLQALQARFP-QMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRG 398 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCC
Confidence 9999999999999999877775 678889999999998753210 012467999999999999886 37
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 415 TIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 415 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+++||+|++.+|++++++++++|+++++ ++
T Consensus 399 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~ 428 (430)
T 3i4j_A 399 DHLLLGPPLSITAAEVDGLLALLAGALE-DV 428 (430)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 8999999999999999999999999998 64
No 21
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=4.7e-55 Score=443.91 Aligned_cols=397 Identities=25% Similarity=0.433 Sum_probs=335.8
Q ss_pred hHHHHHHHhhhcccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCCC
Q 012138 39 SQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYN 116 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~ 116 (470)
.++++++.+++....+. ..|+++++++|+++||.+|++||||.++.++.++||+||++.+++.+++++..+++ ..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 85 (439)
T 3dxv_A 6 KALYDRDGAAIGNLQKLRFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85 (439)
T ss_dssp CCHHHHHHHHBCGGGCCCSSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEE
T ss_pred HHHHHHHHHHhccCccCCCCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCC
Confidence 45677887777665443 46899999999999999999999999999999999999999999999998875443 33456
Q ss_pred CcHHHHHHHHhhhh--CC-CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc--
Q 012138 117 DKFPVFAERLTSMF--GY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE-- 191 (470)
Q Consensus 117 ~~~~~l~~~l~~~~--~~-~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~-- 191 (470)
+.+.+++++|++++ +. ++++|++||++|++.++++++.+. ++..||+++++|||.+..++.+++...
T Consensus 86 ~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~--------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 157 (439)
T 3dxv_A 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT--------GRSGVIAFAGAYHGCTVGSMAFSGHSVQA 157 (439)
T ss_dssp HHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH--------SCCEEEEETTCCCCSSHHHHCC-------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh--------CCCEEEEECCCCCCCcHHHHhhcCCCchh
Confidence 77899999999998 56 699999999999999999886531 445888999999999999988877655
Q ss_pred cccCCCCCCCCeeeecCC----------CHHHHHHHHH-hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcE
Q 012138 192 AIRGFGPLLPGHLKVDFG----------DITALEKIFK-ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 260 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~----------d~~~Le~~l~-~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gil 260 (470)
++..|.+..+++..++++ |+++|+++++ .+.+++++|++||++|++|.+.|+++++++|.++|++||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 237 (439)
T 3dxv_A 158 DAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGIL 237 (439)
T ss_dssp ------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred hccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 555666655555666766 6899999994 22347999999999999999999999999999999999999
Q ss_pred EEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH
Q 012138 261 MIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 340 (470)
Q Consensus 261 lI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~ 340 (470)
||+||+|+||+++|..+..+++++.||+++|||++++|+ |+|++++++++++.+....+..+| +++++++++.++|+.
T Consensus 238 li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G~-riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~ 315 (439)
T 3dxv_A 238 VVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGL-PLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLET 315 (439)
T ss_dssp EEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTTS-CCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHH
T ss_pred EEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCCc-ceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHH
Confidence 999999999999998888888999999999999999999 999999999999999887788899 999999999999998
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC-----CchhHHHHHHHHHHcCceeccCCC-
Q 012138 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-----LPVSAYDICLKMKERGILAKPTHD- 414 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gv~~~~~~~- 414 (470)
++++++.++++++++++++.|+++...+| .+..+++.|.++++.+.... ......++++.|+++||++.+++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 394 (439)
T 3dxv_A 316 IDRDDLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMN 394 (439)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTT
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCC
Confidence 88888999999999999999999887775 67888999999999874210 023577899999999999988754
Q ss_pred -CEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 415 -TIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 415 -~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
+++||+|++.+|++++++++++|+++++ ++.+
T Consensus 395 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~~ 427 (439)
T 3dxv_A 395 GNVLEFTPPLTITETDIHKALDLLDRAFS-ELSA 427 (439)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHH-TGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHhc
Confidence 8999999999999999999999999999 8765
No 22
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=1e-54 Score=440.18 Aligned_cols=393 Identities=24% Similarity=0.400 Sum_probs=334.2
Q ss_pred CchHHHHHHHhhhcccC-------C---CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHH
Q 012138 37 SSSQQLINLEYEYSAHN-------Y---HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK 106 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-------~---~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 106 (470)
++|++++++.++++... + .+.|+++++++|+++||.+|++||||.++++++++||+||+|.+++.+++++
T Consensus 5 ~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~ 84 (429)
T 3k28_A 5 DKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAER 84 (429)
T ss_dssp HHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhh
Confidence 56888999988877543 2 3679999999999999999999999999999999999999999999999988
Q ss_pred ccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc
Q 012138 107 LTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
.... .+.++...++++++++++ +.++++|++||++|++.|+++++.+ ++++.||+++++|||++..++.
T Consensus 85 ~~~~--~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~--------~~~~~vi~~~~~yhg~~~~~~~ 154 (429)
T 3k28_A 85 GTSF--GAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGY--------TGRNKILKFIGCYHGHGDSLLI 154 (429)
T ss_dssp CSCC--SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH--------HTCCEEEEEETCCCCSCGGGCS
T ss_pred CcCc--CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHh--------hCCCEEEEECCCcCCCcHHHHH
Confidence 6532 345677889999999988 6889999999999999999998864 2566899999999999988877
Q ss_pred ccCCcccccCC--CCCC-----CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC
Q 012138 186 MSCDNEAIRGF--GPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 186 ~~~~~~~~~~~--~~~~-----~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
.++.......+ .+.. .....++++|+++|+++++++++++++|++||+++++|.+.|+++++++|+++|++||
T Consensus 155 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 234 (429)
T 3k28_A 155 KAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNG 234 (429)
T ss_dssp SCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred hcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcC
Confidence 66543221111 1111 2467889999999999998655578999999999999999999999999999999999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC---CccCCCCCCHHHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAI 335 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~ 335 (470)
++||+||+|+|| ++|.+++.+++++.||+++|||++++|+ |+|++++++++++.+... .+++||++|+++++++.
T Consensus 235 ~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~ 312 (429)
T 3k28_A 235 ALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGL-PVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGY 312 (429)
T ss_dssp CEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTS-CCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred CEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCCC-CeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHH
Confidence 999999999999 9998888888899999999999999998 999999999999988653 47789999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHHc
Q 012138 336 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKER 405 (470)
Q Consensus 336 a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~~ 405 (470)
++|+.++ +++.++++++++++++.|+++...++ .+..+++.|.++++.+..... .....++++.|+++
T Consensus 313 aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 390 (429)
T 3k28_A 313 ETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHG-IPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ 390 (429)
T ss_dssp HHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCC-CCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHC
Confidence 9999876 77899999999999999999877665 667889999999998753210 12357889999999
Q ss_pred CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 406 Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
||++.+++.+.+|++ +.+|++++++++++|+++++ +++
T Consensus 391 Gv~v~~~~~~~~r~~--~~~t~e~i~~~l~~l~~~l~-~~~ 428 (429)
T 3k28_A 391 GVFLPPSQFEGLFLS--TVHSDADIEATIAAAEIAMS-KLK 428 (429)
T ss_dssp TEECCSSTTSCBCCC--TTCCHHHHHHHHHHHHHHHH-TCC
T ss_pred CeEEecCCCCCEEEE--CCCCHHHHHHHHHHHHHHHH-HHh
Confidence 999999877888885 79999999999999999998 763
No 23
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=4.3e-54 Score=435.29 Aligned_cols=391 Identities=26% Similarity=0.422 Sum_probs=332.0
Q ss_pred CchHHHHHHHhhhcccCC----------CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHH
Q 012138 37 SSSQQLINLEYEYSAHNY----------HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK 106 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~----------~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 106 (470)
+++.++.++.++++.... .+.|+++++++|+++||.+|++||||.++++++++||+||+|.+++.+++++
T Consensus 4 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 83 (427)
T 3fq8_A 4 IKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK 83 (427)
T ss_dssp HHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHh
Confidence 567889999888765422 3679999999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc
Q 012138 107 LTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
..+. .+..+...++++++++.+ +.++++|++||++|++.|+++++.+ ++++.||+++++|||.+..+..
T Consensus 84 ~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~--------~~~~~vi~~~~~yhg~~~~~~~ 153 (427)
T 3fq8_A 84 GTSF--GAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAY--------TGRDKIIKFEGCYHGHADMFLV 153 (427)
T ss_dssp CSCC--SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEEETCCCCSCGGGCS
T ss_pred CCCc--CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh--------hCCCEEEEECCCcCCCCHHHHH
Confidence 6542 236677899999999988 5789999999999999999988764 2456899999999999988777
Q ss_pred ccCCcccccCC--CCCC-----CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC
Q 012138 186 MSCDNEAIRGF--GPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 186 ~~~~~~~~~~~--~~~~-----~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
.++.......+ .+.. .++..++++|+++|+++++++++++++|++||++|++|.+.++++++++|+++|++||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 233 (427)
T 3fq8_A 154 KAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD 233 (427)
T ss_dssp SCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTT
T ss_pred hcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 66543221111 1111 2367889999999999998866689999999999999999999999999999999999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC---CccCCCCCCHHHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAI 335 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~ 335 (470)
++||+||+|+|| ++|..+..+++++.||+++|||++++|+ |+|++++++++++.+... .++++|++|+++++++.
T Consensus 234 ~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~ 311 (427)
T 3fq8_A 234 ALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI 311 (427)
T ss_dssp CEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred CEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCCc-ceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHH
Confidence 999999999999 8998887888999999999999999998 999999999999988753 47889999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHHc
Q 012138 336 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKER 405 (470)
Q Consensus 336 a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~~ 405 (470)
++|+.++++++.++++++++++++.|+++...++ ....+++.|+++++++..... .....++++.|+++
T Consensus 312 aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 390 (427)
T 3fq8_A 312 KTLELLRQPGTYEYLDQITKRLSDGLLAIAQETG-HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ 390 (427)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC
Confidence 9999988888999999999999999999876654 556778899999998754321 11256789999999
Q ss_pred CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 406 Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
||++.+++.. |+.+++.+|++++++++++|+++++
T Consensus 391 Gi~v~~~~~~--r~~~~~~~t~e~i~~~l~~l~~~l~ 425 (427)
T 3fq8_A 391 GIYLAPSQFE--AGFTSLAHTEEDIDATLAAARTVMS 425 (427)
T ss_dssp TEECCSSTTS--CEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcEEecCCCC--CEEeeCcCCHHHHHHHHHHHHHHHH
Confidence 9999987655 5556799999999999999999987
No 24
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=3.1e-54 Score=436.62 Aligned_cols=390 Identities=24% Similarity=0.394 Sum_probs=321.2
Q ss_pred chHHHHHHHhhhcccC----------CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc
Q 012138 38 SSQQLINLEYEYSAHN----------YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL 107 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~----------~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 107 (470)
++.++.++.++++... +.+.|+++++++|+++||.+|++||||.++++++++||+||+|++++.+++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~ 85 (429)
T 4e77_A 6 KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG 85 (429)
T ss_dssp HHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC
Confidence 5788899888876432 234799999999999999999999999999999999999999999999999875
Q ss_pred cccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 108 TLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
... .++++...++++++++.+ +.++++|++||+||++.|+++++.+ +++..||+++++|||.+...+..
T Consensus 86 ~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~--------~~~~~ii~~~~~yhg~~~~~~~~ 155 (429)
T 4e77_A 86 LSF--GAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGY--------TGRDKIIKFEGCYHGHADCLLVK 155 (429)
T ss_dssp SCC--SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEETTCCCC--------
T ss_pred ccc--CCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHh--------hCCCEEEEEcCccCCCChhhhhh
Confidence 432 245677889999999987 5789999999999999999988764 25568999999999998865543
Q ss_pred cCCcccc--cC----C-CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCc
Q 012138 187 SCDNEAI--RG----F-GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259 (470)
Q Consensus 187 ~~~~~~~--~~----~-~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gi 259 (470)
.+..... .+ + .........++++|+++|+++++++++++++|++||+++++|.+.|+++++++|+++|++||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~ 235 (429)
T 4e77_A 156 AGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGA 235 (429)
T ss_dssp ----------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC
T ss_pred cCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 3321110 00 0 011124677889999999999987656899999999999999999899999999999999999
Q ss_pred EEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC---CccCCCCCCHHHHHHHHH
Q 012138 260 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIA 336 (470)
Q Consensus 260 llI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~a 336 (470)
+||+||+|+|| ++|..++.+++++.||+++|||++++|+ |+|++++++++++.+... .+++||++|+++++++.+
T Consensus 236 lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G~-~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~a 313 (429)
T 4e77_A 236 LLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGM-PVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFA 313 (429)
T ss_dssp EEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTTS-CCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHH
T ss_pred EEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCCC-CeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHH
Confidence 99999999999 9998888889999999999999999998 999999999999988753 478899999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----------chhHHHHHHHHHHc
Q 012138 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----------PVSAYDICLKMKER 405 (470)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~l~~~ 405 (470)
+|+.++++++.++++++++++++.|+++...++ .+..+++.|+++++++..... .....++++.|+++
T Consensus 314 al~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 392 (429)
T 4e77_A 314 CLTEISQVGVYETLTELTDSLATGLRHAAKEEN-IPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE 392 (429)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC
Confidence 999998888999999999999999998876664 566788999999998865310 12347899999999
Q ss_pred CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 406 Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
||++.+++...+|+ ++.+|++++++++++|+++++
T Consensus 393 Gi~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 393 GVYLAPSAFEAGFM--SLAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp TEECCSSTTSCEEC--CTTCCHHHHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCEEE--eccCCHHHHHHHHHHHHHHHH
Confidence 99999887666665 589999999999999999987
No 25
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=6.9e-55 Score=443.54 Aligned_cols=399 Identities=26% Similarity=0.394 Sum_probs=331.7
Q ss_pred chHHHHHHHhhhcccCCCCCceEEEeecCCEEEe-CCCCeEEeccCCcccccCCCCCHHHH-H-HHHH---HHHHccccC
Q 012138 38 SSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWD-PEGNKYLDFLSAYSAVNQGHCHPKIM-K-ALQE---QAEKLTLSS 111 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d-~~G~~~lD~~~~~~~~~lG~~~p~v~-~-a~~~---~~~~~~~~~ 111 (470)
+++++.+...++......+.++.+++++|+++|| .+|++||||.++++++++||+||+|+ + ++.+ +++...+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~ 95 (449)
T 2cjg_A 16 TPDRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN 95 (449)
T ss_dssp CGGGHHHHHHTTSCCCSCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT
T ss_pred CHHHHHHHHHHhhcccCCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456777777765332224555567999999999 99999999999999999999999999 9 9999 887765444
Q ss_pred CCCCCCcHHHHHHHHhhhh---CCCeEEecCChhHHHHHHHHHHHHhchhc---ccCC-CCCcEEEEEccCccccccchh
Q 012138 112 RAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVK---KKFS-IDEAIIVSCCGCFHGRTLAAI 184 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~---~~~~v~~~~sGteA~~~al~~~~~~~~~~---~~~~-~g~~~ii~~~~~yhg~~~~~~ 184 (470)
..+..+...+++++|++++ +.++|+|++||+||++.|+++++.++... ++.+ ++++.||+++++|||++..++
T Consensus 96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~ 175 (449)
T 2cjg_A 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL 175 (449)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence 3456667899999999987 46799999999999999999887643210 0111 124589999999999999998
Q ss_pred cccCC-cccccCCCCCCCCeeeecCCC--HH-------------HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHH
Q 012138 185 SMSCD-NEAIRGFGPLLPGHLKVDFGD--IT-------------ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~~~~d--~~-------------~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
.+++. +.++..+.++.+++..+|++| .+ +|+++++++.+++++|++||++|++|.+.+++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 255 (449)
T 2cjg_A 176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA 255 (449)
T ss_dssp GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence 88875 455667777777788888877 43 388888754458999999999999998777999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhh-----cCcCCccCC
Q 012138 249 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC-----IQPGEHGST 323 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~-----~~~~~~~~t 323 (470)
+|+++|++||++||+||+|+|||++|.+++++++++.||+++|||++ |+|++++++++++. +....+++|
T Consensus 256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t 330 (449)
T 2cjg_A 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAGRRVDEVADNVFAVPSRLNST 330 (449)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEECGGGGGSTTCTTTSTTSSCCS
T ss_pred HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc-----cEEEEEECHHHhhhhhhcccCCcccccC
Confidence 99999999999999999999999999888788889999999999988 78999999999886 333467789
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHH
Q 012138 324 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK 403 (470)
Q Consensus 324 ~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 403 (470)
|++|+++++++.++|+.++++++.++++++++++++.|+++...+|..+..+++.|.|+++++... ....++++.|+
T Consensus 331 ~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~l~ 407 (449)
T 2cjg_A 331 WGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTT---ADRDELIRQLW 407 (449)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSH---HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECCh---HHHHHHHHHHH
Confidence 999999999999999998878899999999999999999987666522677889999999877532 24678999999
Q ss_pred HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 404 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 404 ~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++||++.+++.+++||+|++.+|+++|++++++|+++++ ++
T Consensus 408 ~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~ 448 (449)
T 2cjg_A 408 QRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALP-VV 448 (449)
T ss_dssp HTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred HCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 999999988789999999999999999999999999987 53
No 26
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=3.3e-54 Score=440.62 Aligned_cols=399 Identities=23% Similarity=0.359 Sum_probs=319.2
Q ss_pred CCCchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc--cccCC
Q 012138 35 SSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL--TLSSR 112 (470)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~ 112 (470)
+.+++++++++.+++......++|.++++++|+++||.||++||||.+++++.++||+||+|++++.+++... .+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~ 102 (472)
T 1ohv_A 23 PGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPA 102 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCTTCCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCC
T ss_pred CCccHHHHHHHHHhhhccccccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccc
Confidence 3456788888888877554455678899999999999999999999999999999999999999999987543 22211
Q ss_pred ---CCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhc-cc---------------CCCC--CcEE
Q 012138 113 ---AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVK-KK---------------FSID--EAII 169 (470)
Q Consensus 113 ---~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~-~~---------------~~~g--~~~i 169 (470)
....++.++++++|+++. +.++|+|++||+||++.|+++++.|+..+ ++ ..+| ++.|
T Consensus 103 ~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~i 182 (472)
T 1ohv_A 103 LGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSI 182 (472)
T ss_dssp TTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEE
T ss_pred cccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeE
Confidence 113456667777777766 57899999999999999999998653100 11 0124 4689
Q ss_pred EEEccCccccccchhcccCCcccccCCCCCCCCe-------ee------ecCC------CHHHHHHHHHhcCC---CeEE
Q 012138 170 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGH-------LK------VDFG------DITALEKIFKESGD---QIAG 227 (470)
Q Consensus 170 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~------d~~~Le~~l~~~~~---~~~~ 227 (470)
|+++++|||++.+++.+++....+....+.. ++ .. +++| |+++|+++++++++ ++++
T Consensus 183 i~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 261 (472)
T 1ohv_A 183 LSFMGAFHGRTMGCLATTHSKAIHKIDIPSF-DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAG 261 (472)
T ss_dssp EEETTCCCCSSHHHHHHCCSCHHHHTTSCCC-CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEECCCcccccHHHHhcCCCccccccCCCCC-CCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 9999999999999988877543321111110 00 00 1122 68899999976432 7999
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCC--cceeecccc-ccCCCcceeE
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR--PDMVILGKA-LGGGVIPVSA 304 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~--pdi~s~sK~-l~gG~~~ig~ 304 (470)
|++||++|++|.+.|+++|+++|+++|++||++||+||+|+|||++|.+++++++++. ||+++|||+ ++||+
T Consensus 262 vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~----- 336 (472)
T 1ohv_A 262 IIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGF----- 336 (472)
T ss_dssp EEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEE-----
T ss_pred EEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCc-----
Confidence 9999999999998889999999999999999999999999999999988888888886 999999999 78776
Q ss_pred EEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE
Q 012138 305 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV 384 (470)
Q Consensus 305 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~ 384 (470)
++ ++++ ..+....+++||++|+++++++.++|+.++++++.++++++++++++.|+++...+|..+..+++.|.|+++
T Consensus 337 ~~-~~~~-~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~ 414 (472)
T 1ohv_A 337 FH-KEEF-RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSF 414 (472)
T ss_dssp EE-CGGG-SCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEE
T ss_pred cC-chhh-cccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEE
Confidence 33 6665 334556678899999999999999999988888999999999999999999866665236778899999998
Q ss_pred EeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 385 EFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++... .....+++.|+++||++.+++.+++||+|++.+|+++|++++++|+++++ ++
T Consensus 415 ~~~~~---~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~-~~ 471 (472)
T 1ohv_A 415 DTPDE---SIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA-DF 471 (472)
T ss_dssp ECSSH---HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-TC
T ss_pred EeCCh---hHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-hc
Confidence 76532 25678999999999999987778999999999999999999999999998 65
No 27
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=2.9e-53 Score=429.95 Aligned_cols=396 Identities=29% Similarity=0.480 Sum_probs=330.2
Q ss_pred chHHHHHHHhhhcccCCCC-CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCC
Q 012138 38 SSQQLINLEYEYSAHNYHP-VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN 116 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~-~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~ 116 (470)
++.++.+..+++....+.. .|+++++++|+++||.+|++|||+.++.++.++||+||+|.+++.++++...+.+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~ 84 (433)
T 1zod_A 5 DDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 84 (433)
T ss_dssp TCHHHHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCC
T ss_pred hhHHHHHHHHHhhcccccccCCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCC
Confidence 4677888877776665554 589999999999999999999999999888899999999999999999886543344556
Q ss_pred CcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 117 DKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
+...+++++++++++ .++|++++||++|++.++++++.+ ++++.||+++++|||.+..++.+++.. ++.
T Consensus 85 ~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~--------~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~ 155 (433)
T 1zod_A 85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV--------TGKYEIVGFAQSWHGMTGAAASATYSA-GRK 155 (433)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH--------HTCCEEEEETTCCCCSSHHHHHTCCSS-CCS
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh--------hCCCeEEEECCCcCCCChhHHhhcCCc-ccc
Confidence 678899999999985 578999999999999999987653 245589999999999999888776543 233
Q ss_pred CCCCCCCCeeeec--------CC---------CHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHh
Q 012138 195 GFGPLLPGHLKVD--------FG---------DITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 256 (470)
Q Consensus 195 ~~~~~~~~~~~~~--------~~---------d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~ 256 (470)
.+.+...++..++ ++ |+++|++++++++ +++++|++||++|++|.+.++++++++|+++|++
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~ 235 (433)
T 1zod_A 156 GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEA 235 (433)
T ss_dssp SSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHH
T ss_pred ccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence 4444444443332 33 3899999998532 4789999999999999887799999999999999
Q ss_pred cCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC--CccCCCCCCHHHHHHH
Q 012138 257 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVA 334 (470)
Q Consensus 257 ~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa 334 (470)
||++||+||+|+||+++|..++++.+++.||+++|||++++|+ |+|++++++++++.+... .+++++++|+++++++
T Consensus 236 ~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~-~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~ 314 (433)
T 1zod_A 236 RGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVG 314 (433)
T ss_dssp HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTS-SCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHH
T ss_pred hCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCC-CeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHH
Confidence 9999999999999999998777787889999999999999998 999999999999888653 3448899999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC-C----chhHHHHHHHHHHcCcee
Q 012138 335 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-L----PVSAYDICLKMKERGILA 409 (470)
Q Consensus 335 ~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~-~----~~~~~~~~~~l~~~Gv~~ 409 (470)
.++|+.++++++.++++++++++++.|+++...+| .+..+++.|.|+++++.... . .....++++.|+++||++
T Consensus 315 ~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 393 (433)
T 1zod_A 315 LRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFD-CIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSM 393 (433)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeE
Confidence 99999988888999999999999999998866665 56778899999998875310 0 124678999999999999
Q ss_pred ccCC--C--CEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 410 KPTH--D--TIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 410 ~~~~--~--~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.++. . +++||+|++.+|++++++++++|+++++ ++
T Consensus 394 ~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~-~~ 432 (433)
T 1zod_A 394 NIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE-RA 432 (433)
T ss_dssp CEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred eccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHH-Hh
Confidence 8764 2 8999999999999999999999999987 54
No 28
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=2.2e-58 Score=466.27 Aligned_cols=386 Identities=23% Similarity=0.317 Sum_probs=327.6
Q ss_pred CCchHHHHHHHhhhcccC-------CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc
Q 012138 36 SSSSQQLINLEYEYSAHN-------YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 108 (470)
.+++++++++.++++... |.++|+++++++|+++||.|||+||||.+++++.++||+||+|++++.+++++..
T Consensus 54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~ 133 (465)
T 2yky_A 54 NPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL 133 (465)
Confidence 456788888888887632 4457999999999999999999999999999999999999999999999998743
Q ss_pred ccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 109 LSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
. ..++++...+|+++|++++ +.++++|+|||+||++.|+++++.+ ++++.||+++++|||++..++ +
T Consensus 134 ~--~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~--------tgr~~ii~~~~~yHG~~~~~~--s 201 (465)
T 2yky_A 134 N--LSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAI--------TGRKTVLAFDGGYHGGLLNFA--S 201 (465)
Confidence 2 2356788899999999998 7889999999999999999998764 356689999999999998877 2
Q ss_pred CCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccc
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~ 267 (470)
+ +. ..++ .+.+..++|+|+++|+++++++++++++|++||+++++|.+.|+++++++|+++|++||++||+||+|
T Consensus 202 g-~~-~~g~---~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 276 (465)
T 2yky_A 202 G-HA-PTNA---PYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276 (465)
Confidence 2 10 1111 01346778899999999998644589999999998889998889999999999999999999999999
Q ss_pred cCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-----CCccCCCCCCHHHHHHHHHHHHHHh
Q 012138 268 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-----GEHGSTFGGNPLASAVAIASLDVIR 342 (470)
Q Consensus 268 ~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-----~~~~~t~~~~~~~~aaa~a~l~~~~ 342 (470)
+ | ++|.+++++++++.||+++|||++++|+ |+|++++++++++.+.+ ..+++||++||++++++.++|+.++
T Consensus 277 ~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G~-piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~ 353 (465)
T 2yky_A 277 T-S-RLSGGGAQEMLGISADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY 353 (465)
Confidence 9 6 8898888899999999999999999998 99999999999998876 2477899999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHHcCceeccC
Q 012138 343 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKERGILAKPT 412 (470)
Q Consensus 343 ~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~~Gv~~~~~ 412 (470)
++++.+++++++++++++|+++..+++ .+..+++.|+|+++++..... ......+++.|+++||++.|+
T Consensus 354 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~ 432 (465)
T 2yky_A 354 TRQAASDLSASGDRFRANLNRIAVENQ-APLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPR 432 (465)
Confidence 888999999999999999999876664 566789999999998754110 012567889999999999887
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 413 HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 413 ~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.... |++.+|++||++++++|+++++ +++.
T Consensus 433 ~~~~----~s~~~t~edid~~l~~l~~~l~-~~~~ 462 (465)
T 2yky_A 433 GMYA----LSLEIADAGRDAFAEALADFIG-EQRA 462 (465)
Confidence 5332 7789999999999999999998 7643
No 29
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=9.7e-53 Score=426.26 Aligned_cols=394 Identities=25% Similarity=0.400 Sum_probs=324.8
Q ss_pred CCchHHHHHHHhhhcccC-------C-CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc
Q 012138 36 SSSSQQLINLEYEYSAHN-------Y-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL 107 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-------~-~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 107 (470)
.+++++++++.++++... + .++|+++++++|+++||.+|++||||.++++++++||+||++.+++.+++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~ 88 (434)
T 2epj_A 9 GEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARG 88 (434)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGGCSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHhhcCCCcCcccccccCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC
Confidence 456889999998887532 2 45599999999999999999999999999998899999999999999999874
Q ss_pred cccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 108 TLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
.. ..+..+...+++++|++++ +.++++|++||++|++.++++++.++ +++.||+++++|||.+..++..
T Consensus 89 ~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~--------~~~~vi~~~~~yhg~~~~~~~~ 158 (434)
T 2epj_A 89 WL--YGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYT--------GRDLILKFDGCYHGSHDAVLVA 158 (434)
T ss_dssp SC--CSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHH--------CCCEEEEEETCCCCSSGGGSEE
T ss_pred CC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh--------CCCeEEEEcCCcCCCCHHHHHh
Confidence 32 2355677899999999998 78999999999999999999876531 3447888899999998877655
Q ss_pred cCCcccc--cCCC-CC----CCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCc
Q 012138 187 SCDNEAI--RGFG-PL----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259 (470)
Q Consensus 187 ~~~~~~~--~~~~-~~----~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gi 259 (470)
++..... .+.. .. ..++..++++|+++|+++++++++++++|++||+++++|.+.|+++++++|+++|++||+
T Consensus 159 ~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 238 (434)
T 2epj_A 159 AGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA 238 (434)
T ss_dssp CC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC
T ss_pred cCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC
Confidence 4321100 0011 11 023567888999999999986434789999999999999998899999999999999999
Q ss_pred EEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC---CccCCCCCCHHHHHHHHH
Q 012138 260 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIA 336 (470)
Q Consensus 260 llI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~a 336 (470)
+||+||+|+|| ++|..++++++++.||+++|||++++|+ |+|++++++++++.+... .+++||++|+++++++.+
T Consensus 239 ~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a 316 (434)
T 2epj_A 239 LLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGF-PVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLA 316 (434)
T ss_dssp EEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHH
T ss_pred EEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCCc-ceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHH
Confidence 99999999999 7787777778899999999999999998 999999999999988752 367889999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC----------CchhHHHHHHHHHHcC
Q 012138 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSAYDICLKMKERG 406 (470)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~l~~~G 406 (470)
+|+.++++++.++++++++++++.|+++...++ ....+++.|.++++.+.... ......++++.|+++|
T Consensus 317 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 395 (434)
T 2epj_A 317 TLKALEEEPVYSVSREAAKALEEAASEVLDRTG-LPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRG 395 (434)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCC
Confidence 999988788999999999999999998765443 45567889999999886411 0124678999999999
Q ss_pred ceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 407 ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 407 v~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
|++.+++...+| +++.+|++++++++++|+++++ ++
T Consensus 396 v~v~~~~~~~~~--~~~~~t~e~i~~~l~~l~~~l~-~~ 431 (434)
T 2epj_A 396 VFIAPSNLEAVF--TGLPHQGEALEIAVEGLRSSLK-TV 431 (434)
T ss_dssp EECCSSTTSCEE--CCTTCSHHHHHHHHHHHHHHHH-HH
T ss_pred eEEeccCCCcEE--EeccCCHHHHHHHHHHHHHHHH-HH
Confidence 999988655454 5589999999999999999988 65
No 30
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=1.3e-51 Score=414.16 Aligned_cols=392 Identities=31% Similarity=0.505 Sum_probs=340.1
Q ss_pred HhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHH
Q 012138 46 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAER 125 (470)
Q Consensus 46 ~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (470)
..+|..+.|.+.|+++++++|+++||.+|++||||.++.+..++||+||++.+++.++++...+....+..+...+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (406)
T 4adb_A 10 FDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKK 89 (406)
T ss_dssp HHHHBCSSCCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHH
T ss_pred HHHHhhhhcCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHH
Confidence 34567788888999999999999999999999999999988999999999999999999876554444566778999999
Q ss_pred HhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeee
Q 012138 126 LTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK 205 (470)
Q Consensus 126 l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (470)
++++++.+++++++||++|++.++++++.+.... +. ++++.|++.+++||+....+...++.+.+...+.+...++..
T Consensus 90 la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~-~~-~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
T 4adb_A 90 LIDATFADRVFFCNSGAEANEAALKLARKFAHDR-YG-SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRH 167 (406)
T ss_dssp HHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHH-TC-TTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEE
T ss_pred HHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhc-CC-CCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceE
Confidence 9999999999999999999999999887532111 11 244589999999999999988888877777777777778889
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCc-cccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAG-VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV 284 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G-~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~ 284 (470)
++++|+++|++++++ ++++|+++| +||+| .+.++.+++++|.++|++||++||+||+|+||+++|..++.+.+++
T Consensus 168 ~~~~d~~~l~~~l~~---~~~~v~~~p-~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 243 (406)
T 4adb_A 168 AAYNDINSASALIDD---STCAVIVEP-IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV 243 (406)
T ss_dssp ECTTCHHHHHTTCST---TEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC
T ss_pred eCCCcHHHHHHHhcC---CeEEEEEeC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC
Confidence 999999999998874 899999998 55555 4445889999999999999999999999999999998887788888
Q ss_pred CcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012138 285 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 285 ~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 364 (470)
.||+++|||++++|+ |+|++++++++++.+....++.+++.++++++++.++|+.++++++.++++++++++.+.|+++
T Consensus 244 ~~d~~t~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 322 (406)
T 4adb_A 244 TPDLLTTAKALGGGF-PVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTI 322 (406)
T ss_dssp CCSEEEECGGGGTTS-CCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEechhhcCCC-CeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 9999999999999998878888999999999999999998877889999999999999999988
Q ss_pred HhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 365 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 365 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
...++ .+..+++.|.++++.+.... ..+..++++.|.++||.+.+++.+++|+++++.+|++++++++++|+++++ +
T Consensus 323 ~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~-~ 399 (406)
T 4adb_A 323 NHRYG-LFSEVRGLGLLIGCVLNADY-AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACE-H 399 (406)
T ss_dssp HHHHC-CEEEEEEETTEEEEEECTTT-TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHH-H
T ss_pred HHhCC-CceEEEEEEEEEEEEEeCCc-HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHHHHH-H
Confidence 66543 56677888999999886531 124788999999999999998889999999999999999999999999998 7
Q ss_pred cCC
Q 012138 445 LPK 447 (470)
Q Consensus 445 ~~~ 447 (470)
+.+
T Consensus 400 ~~~ 402 (406)
T 4adb_A 400 FVS 402 (406)
T ss_dssp HHC
T ss_pred HHh
Confidence 643
No 31
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=3.9e-52 Score=423.72 Aligned_cols=382 Identities=26% Similarity=0.422 Sum_probs=317.6
Q ss_pred CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhh--CCC
Q 012138 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYD 133 (470)
Q Consensus 57 ~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~ 133 (470)
.|+++++++|+++||.+|++|||+.+++++.++||+||+|.+++.+++++...... .+..+...+++++|++++ +.+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 48899999999999999999999999998889999999999999999987642111 355667889999999998 567
Q ss_pred eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC----
Q 012138 134 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---- 209 (470)
Q Consensus 134 ~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 209 (470)
+|++++||++|++.++++++.++. .+|. ++++.||+++++|||.+..++.+++.+.++..|.+..+++..++.+
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~-~~g~-~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~ 189 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWR-LKGQ-ATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLAS 189 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHH-HTTC-TTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGG
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHH-hcCC-CCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCcccc
Confidence 899999999999999998876431 1222 2345899999999999988887776655555666555554433321
Q ss_pred ------C--------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC
Q 012138 210 ------D--------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274 (470)
Q Consensus 210 ------d--------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G 274 (470)
| +++|++++++++ +++++|++||++|++|.+.|+++++++|.++|++||++||+||+|+|||++|
T Consensus 190 ~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g 269 (449)
T 3a8u_X 190 NAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG 269 (449)
T ss_dssp GTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred CccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC
Confidence 5 899999998543 3789999999989999988899999999999999999999999999999999
Q ss_pred CccccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcC---------CccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 275 RMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPG---------EHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 275 ~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~---------~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
..+.++.+++.||+++|||++++| + |+|++++++++++.+... .++.++++|+++++++.++|+.++++
T Consensus 270 ~~~~~~~~~~~~di~s~sK~l~~G~~-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~ 348 (449)
T 3a8u_X 270 SMFGADSFGVTPDLMCIAKQVTNGAI-PMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE 348 (449)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSS-CCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred cchhhhhcCCCCCEEEEcccccCCCC-ceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc
Confidence 877778888899999999999998 6 999999999999887653 35678899999999999999998877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCch--hHHHHHHHHHHcCceeccCCCCEEEEecC
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV--SAYDICLKMKERGILAKPTHDTIVRLTPP 422 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~ 422 (470)
++.++++++++++++.|+++. .+| .+..+++.|.++++++....... +..++++.|+++||++.+++ +++||+|+
T Consensus 349 ~~~~~~~~~~~~l~~~L~~l~-~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRis~~ 425 (449)
T 3a8u_X 349 NLVQSVAEVAPHFEKALHGIK-GAK-NVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG-DTLQFGPT 425 (449)
T ss_dssp THHHHHHHHHHHHHHHHHTTT-TST-TEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET-TEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHh-cCC-CeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC-CEEEEECC
Confidence 899999999999999998743 344 56667889999999886432111 23479999999999999875 89999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccc
Q 012138 423 LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 423 ~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+|++++++++++|+++++ ++
T Consensus 426 ~~~t~~~i~~~l~~l~~~l~-~~ 447 (449)
T 3a8u_X 426 FNSKPQDLDRLFDAVGEVLN-KL 447 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-HC
T ss_pred CcCCHHHHHHHHHHHHHHHH-HH
Confidence 99999999999999999998 64
No 32
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-51 Score=414.58 Aligned_cols=382 Identities=34% Similarity=0.605 Sum_probs=315.1
Q ss_pred hHHHHHHHhhh-cccCCCC--CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCC-CHHHHHHHHHHHHHccccC-CC
Q 012138 39 SQQLINLEYEY-SAHNYHP--VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHC-HPKIMKALQEQAEKLTLSS-RA 113 (470)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~--~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~ 113 (470)
++++++...+| ..+.+.+ .|+++++++|+++||.+|++|||+.++.+.+++||+ ||+|++++.++++...+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~ 82 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND 82 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSSCCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSC
T ss_pred hHHHHHHHHhhhccccccccCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccc
Confidence 56778888888 6777765 799999999999999999999999999988899999 9999999999998764422 23
Q ss_pred CCCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
+..+...+++++++++++. ++|++++||+||++.++++++.+ + ++.||+++++|||.+..+..+++..
T Consensus 83 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~--------~-~~~vi~~~p~yh~~~~~~~~~~~~~ 153 (419)
T 2eo5_A 83 FYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT--------G-RKYIIAFLGGFHGRTFGSISLTASK 153 (419)
T ss_dssp SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT--------S-CCEEEEETTCCCCSSHHHHHHCCSC
T ss_pred cCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh--------h-CCcEEEECCCcCCCCHhhHhhcCCc
Confidence 5566688999999999874 58999999999999999987653 2 3489999999999999888777654
Q ss_pred -ccccCCCCCCCCeeeecCC---------------------CHHHHH-HHHHhcC--CCeEEEEEccccCCCccccCChh
Q 012138 191 -EAIRGFGPLLPGHLKVDFG---------------------DITALE-KIFKESG--DQIAGFLFEPIQGEAGVIIPPDG 245 (470)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~---------------------d~~~Le-~~l~~~~--~~~~~vi~epi~n~~G~~~~~~~ 245 (470)
.++..+.+...++..+|++ |+++|+ ++++++. +++++|++||++|++|.+.++++
T Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~ 233 (419)
T 2eo5_A 154 AVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKN 233 (419)
T ss_dssp GGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTT
T ss_pred cccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHH
Confidence 4444555555556666654 367888 8887421 37899999998889998777999
Q ss_pred hHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcCCccCCC
Q 012138 246 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTF 324 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~~~~~t~ 324 (470)
++++|+++|++||++||+||+|++|+++|..++++.+++.||++||||++++| + |+|+++++++++ .+ ...+..+|
T Consensus 234 ~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~-riG~~~~~~~~~-~~-~~~~~~t~ 310 (419)
T 2eo5_A 234 FFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIM-PIGATIFRKDLD-FK-PGMHSNTF 310 (419)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTS-CCEEEEEEGGGC-CC-------CC
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCcc-ceEEEEEchHhh-cC-CcccCCCC
Confidence 99999999999999999999999999999877778788899999999999999 7 999999999988 77 44677899
Q ss_pred CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHH
Q 012138 325 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE 404 (470)
Q Consensus 325 ~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 404 (470)
+.|+++++++.++|+.+++ +.++++++++++.+.|+++ +..+++.|.|+++++.... .... +++.|++
T Consensus 311 ~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~-------~~~~~~~g~~~~i~~~~~~--~~~~-~~~~l~~ 378 (419)
T 2eo5_A 311 GGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL-------ADDVRGIGLAWGLEYNEKK--VRDR-IIGESFK 378 (419)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS-------SSEEEEETTEEEEECSCHH--HHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh-------hhheEeeeEEEEEEEecCc--cHHH-HHHHHHH
Confidence 9999999999999998764 8888999999998888663 3356788999988773211 1355 9999999
Q ss_pred cCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 405 RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 405 ~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+||++.+++.+++||+|++.+|++++++++++|+++++ ++
T Consensus 379 ~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~-~~ 418 (419)
T 2eo5_A 379 RGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIK-VV 418 (419)
T ss_dssp TTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred CCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-hc
Confidence 99999988778999999999999999999999999987 64
No 33
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=8.1e-51 Score=411.55 Aligned_cols=393 Identities=27% Similarity=0.456 Sum_probs=317.8
Q ss_pred HHHHhhhcccCCC----CCceE-EEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCCC
Q 012138 43 INLEYEYSAHNYH----PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYN 116 (470)
Q Consensus 43 ~~~~~~~~~~~~~----~~p~~-~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~ 116 (470)
++.++++.++.+. +.|++ +++++|+++||.+|+.|||+.++.++.++||+||+|.+++.++++.....+ ..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~ 85 (429)
T 1s0a_A 6 LAFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85 (429)
T ss_dssp HHHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEEC
T ss_pred hhHHHHhhccccccccccCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCC
Confidence 4455566666543 34665 999999999999999999999999888999999999999999998764432 23445
Q ss_pred CcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc-cc
Q 012138 117 DKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE-AI 193 (470)
Q Consensus 117 ~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~-~~ 193 (470)
+...++++++++++ +.++|+|++||++|++.++++++.++. .+|. + ++.||+++++||+.+..+..+++... ++
T Consensus 86 ~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~-~~g~-~-~~~vi~~~~~yh~~~~~~~~~~~~~~~~~ 162 (429)
T 1s0a_A 86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQ-AKGE-A-RQRFLTFRNGYHGDTFGAMSVCDPDNSMH 162 (429)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHH-HHTC-C-CCEEEEETTCCCCSSHHHHTTSCTTTTTG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhc-ccCC-C-CCeEEEECCCCCCCchhhhhhcCCchhhc
Confidence 66789999999998 568999999999999999998764321 0111 2 34888999999999887776655322 23
Q ss_pred cCCCCCCCCeeeec-----------CCCHHHHHHHHHhcCCCeEEEEEccc-cCCCccccCChhhHHHHHHHHHhcCcEE
Q 012138 194 RGFGPLLPGHLKVD-----------FGDITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILM 261 (470)
Q Consensus 194 ~~~~~~~~~~~~~~-----------~~d~~~Le~~l~~~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~gill 261 (470)
..+.+..++...++ +.|+++|+++++++++++++|++||+ +||+|.+.|+++++++|.++|++||++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~l 242 (429)
T 1s0a_A 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILL 242 (429)
T ss_dssp GGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEE
T ss_pred ccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 33333333322222 24789999999864447899999998 9999988879999999999999999999
Q ss_pred EEeccccCCcccCCccccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcC-----CccCCCCCCHHHHHHHH
Q 012138 262 IADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPG-----EHGSTFGGNPLASAVAI 335 (470)
Q Consensus 262 I~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~-----~~~~t~~~~~~~~aaa~ 335 (470)
|+||+|+|||++|..++++.+++.||+++|||+++|| + |+|++++++++++.+... .++.++++|+++++++.
T Consensus 243 i~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~-~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~ 321 (429)
T 1s0a_A 243 IADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTM-TLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAAN 321 (429)
T ss_dssp EEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSS-CCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHH
T ss_pred EEeehhhCCcccchHHHhhhcCCCCCEEEecccccCCCc-cceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHH
Confidence 9999999999998877777788899999999999999 7 999999999998887653 25678899999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCC
Q 012138 336 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDT 415 (470)
Q Consensus 336 a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 415 (470)
++++.++++++.++++++++++++.|+++.. +| .+..+++.|.++++.+.... +..++++.|+++||++.+. ++
T Consensus 322 aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~-~~~~~~~~g~~~~~~~~~~~---~~~~l~~~l~~~Gi~v~~~-~~ 395 (429)
T 1s0a_A 322 ASLAILESGDWQQQVADIEVQLREQLAPARD-AE-MVADVRVLGAIGVVETTHPV---NMAALQKFFVEQGVWIRPF-GK 395 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CT-TEEEEEEETTEEEEEESSCB---CHHHHHHHHHHTTEECCCB-TT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CC-CEEEEEEeeEEEEEEECCcc---cHHHHHHHHHHCCCEEecc-CC
Confidence 9999888778889999999999999987643 44 46667888999888875432 5678999999999999886 47
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++||+|++.+|++++++++++|+++++ +++
T Consensus 396 ~iRis~~~~~t~e~i~~~~~~l~~~~~-~~~ 425 (429)
T 1s0a_A 396 LIYLMPPYIILPQQLQRLTAAVNRAVQ-DET 425 (429)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHTS-SGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHH-hhh
Confidence 999999999999999999999999988 654
No 34
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=3.6e-51 Score=413.49 Aligned_cols=389 Identities=26% Similarity=0.434 Sum_probs=319.6
Q ss_pred CchHHHHHHHhhhcccC-------CC---CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHH
Q 012138 37 SSSQQLINLEYEYSAHN-------YH---PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK 106 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-------~~---~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 106 (470)
+++++++++.++++... +. ..|+++++++|+++||.+|++||||.++++++++||+||+|.+++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 83 (424)
T 2e7u_A 4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER 83 (424)
T ss_dssp HHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh
Confidence 45788999998887532 22 248999999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc
Q 012138 107 LTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
... ..+..+...++++++++++ +.+++++++||++|++.++++++.++ +++.||+++++|||.+..++.
T Consensus 84 ~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~--------~~~~vi~~~~~yhg~~~~~~~ 153 (424)
T 2e7u_A 84 GLT--FGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYT--------GRPYIVKFRGNYHGHADGLLV 153 (424)
T ss_dssp CSC--CSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHH--------CCCEEEEETTCCCCCCGGGSE
T ss_pred CCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh--------CCCEEEEECCCcCCCcHHHHH
Confidence 432 2355667899999999998 78899999999999999999876542 345788999999999887765
Q ss_pred ccCCccc--ccCCCCCC-----CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC
Q 012138 186 MSCDNEA--IRGFGPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 186 ~~~~~~~--~~~~~~~~-----~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
..+.... ..+..... .+...++++|+++|++++++.++++++|++||+++++|.+.|+++++++|+++ ++||
T Consensus 154 ~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g 232 (424)
T 2e7u_A 154 EAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYG 232 (424)
T ss_dssp ECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGT
T ss_pred hcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcC
Confidence 5432110 00111100 24577888999999999985334789999999888899988899999999999 9999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-C--CccCCCCCCHHHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-G--EHGSTFGGNPLASAVAI 335 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-~--~~~~t~~~~~~~~aaa~ 335 (470)
++||+||+|+|| ++|..++++++++.||++||||++++|+ |+|++++++++++.+.. . .+++||++|+++++++.
T Consensus 233 ~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~ 310 (424)
T 2e7u_A 233 VLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGL 310 (424)
T ss_dssp CEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHH
T ss_pred CEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCCc-ceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHH
Confidence 999999999999 7787777778899999999999999998 99999999999998875 2 36778999999999999
Q ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC----------CchhHHHHHHHHHH
Q 012138 336 ASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSAYDICLKMKE 404 (470)
Q Consensus 336 a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~l~~ 404 (470)
++|+.+++ +++.++++++++++++.|+++..++| .+..+++.|.|+++++.... ......++++.|++
T Consensus 311 aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 389 (424)
T 2e7u_A 311 ATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKG-LPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD 389 (424)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH
Confidence 99999887 88999999999999999998866554 44567889999999875411 01246689999999
Q ss_pred cCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 405 RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 405 ~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+||++.+++...+| +++.+|++++++++++|++++
T Consensus 390 ~Gv~v~~~~~~~~~--~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 390 RGIYWPPSNFEAAF--LSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp TTEECCSSSSSCEE--CCTTCCHHHHHHHHHHHHHHC
T ss_pred CCeEEeccCCCceE--eeccCCHHHHHHHHHHHHHhC
Confidence 99999988655555 558999999999999998864
No 35
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=6.3e-51 Score=415.22 Aligned_cols=391 Identities=24% Similarity=0.308 Sum_probs=307.2
Q ss_pred CchHHHHHHHhhhcccC-------CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc
Q 012138 37 SSSQQLINLEYEYSAHN-------YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL 109 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 109 (470)
+++++++++.++++... +.++|+++++++|+++||.+|++||||.+++++.++||+||+|.+++.++++....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~ 91 (453)
T 2cy8_A 12 EGSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ 91 (453)
T ss_dssp HHHHHHHHHHHHHSCCC------CCSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS
T ss_pred chhHHHHHHHHhhcCCCCCccccccCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC
Confidence 45788999998887542 45679999999999999999999999999999999999999999999999977432
Q ss_pred cCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 110 SSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
..+..+.+.++++++++.+ +.++|++++||++|++.++++++.++ +++.||+++++|||.+.......+
T Consensus 92 --~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~--------~~~~vi~~~~~yhg~~~~~~~~~~ 161 (453)
T 2cy8_A 92 --YAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFT--------GRRMILRFEGHYHGWHDFSASGYN 161 (453)
T ss_dssp --SCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHH--------CCCEEEEECC--------------
T ss_pred --CCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhh--------CCCEEEEEcCCcCCCchhhHhhcC
Confidence 2356778899999998887 67899999999999999999876431 334788899999999887655432
Q ss_pred C----cccccCCC-CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 189 D----NEAIRGFG-PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 189 ~----~~~~~~~~-~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
. +.. .++. ...+++..++++|+++|+++++++++++++|++||++|++|.+.|+++++++|+++|++||++||+
T Consensus 162 ~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~ 240 (453)
T 2cy8_A 162 SHFDGQPA-PGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240 (453)
T ss_dssp ---------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred CccCCCcC-CCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2 100 0010 011235677889999999999864347899999999889999888999999999999999999999
Q ss_pred eccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-----CCccCCCCCCHHHHHHHHHHH
Q 012138 264 DEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-----GEHGSTFGGNPLASAVAIASL 338 (470)
Q Consensus 264 Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-----~~~~~t~~~~~~~~aaa~a~l 338 (470)
||+|+|| ++|..++++++++.||+++|||++++|+ |+|++++++++++.+.. ..+++||++|+++++++.++|
T Consensus 241 DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal 318 (453)
T 2cy8_A 241 DEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGL-PGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI 318 (453)
T ss_dssp ECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHH
T ss_pred ecCcccc-ccCchhhhHHhCCCCcEEEEChhhhCCc-ceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHH
Confidence 9999999 8887777778889999999999999998 99999999999998876 136678999999999999999
Q ss_pred HH-HhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEecc-----C-------C----CchhHHHHHHH
Q 012138 339 DV-IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-----T-------A----LPVSAYDICLK 401 (470)
Q Consensus 339 ~~-~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~-----~-------~----~~~~~~~~~~~ 401 (470)
+. + .+++.++++++++++++.|+++...+| .+..+++.|.++++.+.. . . ......++++.
T Consensus 319 ~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (453)
T 2cy8_A 319 DTIL-EDDVCAKINDLGQFAREAMNHLFARKG-LNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMA 396 (453)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHH
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHH
Confidence 98 7 777899999999999999998865554 555678999999998864 1 0 01236789999
Q ss_pred HHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 402 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 402 l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
|+++||++.|.+ .+| +++.++++++++++++|+++++ ++.+
T Consensus 397 l~~~Gv~v~~~~--~~~--l~~~~t~~~i~~~l~~l~~~l~-~~~~ 437 (453)
T 2cy8_A 397 LILEGVDIGGRG--SVF--LSAQHEREHVEHLVTTFDRVLD-RLAD 437 (453)
T ss_dssp HHHTTEECBTTT--EEE--CCTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHCCeEEeCCC--CEE--eeccCCHHHHHHHHHHHHHHHH-HHHh
Confidence 999999997652 355 4589999999999999999998 7754
No 36
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=1.2e-49 Score=398.73 Aligned_cols=380 Identities=34% Similarity=0.621 Sum_probs=320.2
Q ss_pred cCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC
Q 012138 52 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG 131 (470)
Q Consensus 52 ~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 131 (470)
..+.+.|+++++++|+++||.+|++|+||.++++..++|+++|++.+++.++++.....+..+..+...++++++++++|
T Consensus 17 ~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g 96 (397)
T 2ord_A 17 NTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF 96 (397)
T ss_dssp SCCCCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT
T ss_pred hcccCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC
Confidence 34556799999999999999999999999999888899999999999999999886554333445678899999999999
Q ss_pred CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCH
Q 012138 132 YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDI 211 (470)
Q Consensus 132 ~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 211 (470)
.+++++++||++|++.++++++.+... + .++++.|++.+++||+....++...+...++.++.|...++..++++|+
T Consensus 97 ~~~v~~~~gg~~a~~~al~~~~~~~~~--~-~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~ 173 (397)
T 2ord_A 97 GGKVFFANTGTEANEAAIKIARKYGKK--K-SEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNV 173 (397)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHH--H-CTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCH
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc--C-CCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCH
Confidence 999999999999999999987642110 0 0234478888999999988666665554444456666667788888999
Q ss_pred HHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeec
Q 012138 212 TALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL 291 (470)
Q Consensus 212 ~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~ 291 (470)
++|++++++ ++++|++++++||+|.+..+.+++++|.++|++||++||+||+|+||+++|..+..+.++..||+++|
T Consensus 174 ~~l~~~l~~---~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~ 250 (397)
T 2ord_A 174 EDLRRKMSE---DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTT 250 (397)
T ss_dssp HHHHHHCCT---TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE
T ss_pred HHHHHHhhc---CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeee
Confidence 999999875 89999999999999993338999999999999999999999999999888876655666777999999
Q ss_pred cccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 012138 292 GKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 371 (470)
Q Consensus 292 sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~ 371 (470)
||++++|+ |+|+++++++++ .+....+..+|+.++++++++.++|+.+.++++.++++++++++.+.|+++...+| .
T Consensus 251 sK~~~~G~-r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~ 327 (397)
T 2ord_A 251 AKGLGGGV-PIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD-V 327 (397)
T ss_dssp CGGGGTTS-CCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred ccccCCCc-CeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC-c
Confidence 99999998 999999998887 77655667788999999999999999887777899999999999999988754454 4
Q ss_pred eEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 372 VKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 372 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
+..+++.|.++++.+.... +..++++.|+++||.+.+++++++||++++.++++++++++++|+++++ +
T Consensus 328 ~~~~~~~g~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~-~ 396 (397)
T 2ord_A 328 VADVRGMGLMIGIQFREEV---SNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ-G 396 (397)
T ss_dssp EEEEEEETTEEEEEECTTS---CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-T
T ss_pred eEEEEEEeEEEEEEECChH---HHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHHHHh-h
Confidence 5556788999988876432 5788999999999999988788999999999999999999999999987 5
No 37
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=3.4e-49 Score=399.13 Aligned_cols=398 Identities=28% Similarity=0.544 Sum_probs=326.5
Q ss_pred chHHHHHHHhhhcccCCCC-CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCC
Q 012138 38 SSQQLINLEYEYSAHNYHP-VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFY 115 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~-~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~ 115 (470)
+++++.++..++.++.+.. .|+++++++|+++||.+|++||||.++.+..++||++|++.+++.++++...... ..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~ 82 (426)
T 1sff_A 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA 82 (426)
T ss_dssp CHHHHHHHHHHHSCTTBCCSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEE
T ss_pred hHHHHHHHHHHhcCccccccCCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccC
Confidence 4677888888888877654 6899999999999999999999999998888899999999999999987654432 2234
Q ss_pred CCcHHHHHHHHhhhh-C-C-CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc-c
Q 012138 116 NDKFPVFAERLTSMF-G-Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN-E 191 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~-~-~-~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~-~ 191 (470)
.+...++++.|++++ + . ++|++++||++|++.++++++.+ . .++ .|++++++||+....++.+.+.. .
T Consensus 83 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~--~-----~~~-~vi~~~p~y~~~~~~~~~~~g~~~~ 154 (426)
T 1sff_A 83 YEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA--T-----KRS-GTIAFSGAYHGRTHYTLALTGKVNP 154 (426)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH--H-----TCC-EEEEETTCCCCSSHHHHHHSSCCTT
T ss_pred CHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHh--h-----CCC-eEEEECCCcCCCchHhhhhcCCccc
Confidence 556788999999988 5 4 78999999999999999965432 1 123 78899999999987766665432 2
Q ss_pred cccCCCCCCCCeeeecCC----------CHHHHHHHHHhc--CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCc
Q 012138 192 AIRGFGPLLPGHLKVDFG----------DITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~----------d~~~Le~~l~~~--~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gi 259 (470)
++..+.+...++..++++ |+++|++++++. +.++++|+++|+++++|.+.++++++++|.++|++||+
T Consensus 155 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~ 234 (426)
T 1sff_A 155 YSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI 234 (426)
T ss_dssp TTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTC
T ss_pred cccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 333444444445445442 688999999741 13789999999766699777799999999999999999
Q ss_pred EEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH
Q 012138 260 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 339 (470)
Q Consensus 260 llI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~ 339 (470)
+||+||+|+||+++|..++++.+++.||+++|||++++|+ |+|++++++++++.+....+..+++.++++++++.++|+
T Consensus 235 ~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~Gl-riG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~ 313 (426)
T 1sff_A 235 MLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLK 313 (426)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSS-CCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHH
T ss_pred EEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCC-ceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHH
Confidence 9999999999999998777778888899999999999998 999999999999988766677888999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccC-----CCchhHHHHHHHHHHcCceeccCC-
Q 012138 340 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT-----ALPVSAYDICLKMKERGILAKPTH- 413 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~Gv~~~~~~- 413 (470)
.++++++.++++++++++++.|+++...+| .+..+++.|.++++.+... ..+.+..++++.|.++||++.++.
T Consensus 314 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~ 392 (426)
T 1sff_A 314 VFEQENLLQKANDLGQKLKDGLLAIAEKHP-EIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP 392 (426)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC
Confidence 888778899999999999999998865564 5566677899999988421 001356789999999999998875
Q ss_pred -CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 414 -DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 414 -~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+++||++++.++++++++++++|+++++ +++
T Consensus 393 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~-~~~ 425 (426)
T 1sff_A 393 YYNVLRILVPLTIEDAQIRQGLEIISQCFD-EAK 425 (426)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HHC
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHHHHHH-HHh
Confidence 68999999999999999999999999998 663
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=8.7e-49 Score=392.22 Aligned_cols=384 Identities=32% Similarity=0.555 Sum_probs=319.6
Q ss_pred hHHHHHHHhhhcc---cCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC
Q 012138 39 SQQLINLEYEYSA---HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY 115 (470)
Q Consensus 39 ~~~~~~~~~~~~~---~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~ 115 (470)
.+++++.+++|.+ ..+.++|+++++++|+++||.+|+.|||+.++.+.+++||.+|++.+++.++++.....+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~ 85 (395)
T 1vef_A 6 LEDWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLP 85 (395)
T ss_dssp ---CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSC
T ss_pred HHHHHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccC
Confidence 4567777777765 6677889999999999999999999999999988788999999999999999987654433345
Q ss_pred CCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 116 NDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
.+...++++++++++ +.+++++++||++|++.++++++.+. +++ .||+.+++||+....++...+.....
T Consensus 86 ~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~-------~~~-~vi~~~~~y~~~~~~~~~~~g~~~~~ 157 (395)
T 1vef_A 86 TPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT-------GRK-KFVAAMRGFSGRTMGSLSVTWEPKYR 157 (395)
T ss_dssp CHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH-------SCC-EEEEETTCCCCSSHHHHHTCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh-------CCC-eEEEEcCCcCCCchhhhhhcCCcccc
Confidence 667889999999998 56789999999999999999775321 344 68888999999887666665544333
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..+.+...++..++++|+++|++++++ ++++|+++|++||+|.+.|+++++++|.++|++||++||+||+|+||++.
T Consensus 158 ~~~~p~~~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~ 234 (395)
T 1vef_A 158 EPFLPLVEPVEFIPYNDVEALKRAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRT 234 (395)
T ss_dssp GGGCSCSSCEEEECTTCHHHHHHHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cccCCCCCCeeEeCCCcHHHHHHHhcc---CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccC
Confidence 344555556677788899999999875 78999999999999998888999999999999999999999999999888
Q ss_pred CCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012138 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHL 353 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~ 353 (470)
|..+.++..++.+|+++|||++++|+ |+|++++++++++.+....+..+++.++++++++.++++.+.++++.++++++
T Consensus 235 g~~~~~~~~~~~~d~~s~sK~~~~g~-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 313 (395)
T 1vef_A 235 GKRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAEL 313 (395)
T ss_dssp SSSSTHHHHTCCCSEEEECGGGGTTS-SCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CchhHhhhcCCCCCEEEEcccccCCC-ceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 87665666777899999999999998 99999999999998876556778889999999999999988777788899999
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCCCCEEEEecCCCCCHHHHHH
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~ 432 (470)
++++.+.|+++.. + .+...++.|.++++.+.. ...++++.|. ++||.+.+++.+++||++++.++++++++
T Consensus 314 ~~~l~~~l~~~~~--~-~~~~~~~~g~~~~~~~~~-----~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~ 385 (395)
T 1vef_A 314 GPWFMEKLRAIPS--P-KIREVRGMGLMVGLELKE-----KAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLER 385 (395)
T ss_dssp HHHHHHHHHTSCC--T-TEEEEEEETTEEEEEESS-----CSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHHhhc--C-ceEEEEEEEEEEEEEEcC-----hHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHH
Confidence 9999998877532 2 344566788888887753 2567899999 88999998878999999999999999999
Q ss_pred HHHHHHHHHh
Q 012138 433 GSKALHDVLE 442 (470)
Q Consensus 433 ~~~~l~~~l~ 442 (470)
++++|+++++
T Consensus 386 ~~~~l~~~l~ 395 (395)
T 1vef_A 386 VVEAVRAVLA 395 (395)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998864
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=1.9e-46 Score=372.46 Aligned_cols=371 Identities=36% Similarity=0.636 Sum_probs=307.1
Q ss_pred ccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhh
Q 012138 51 AHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF 130 (470)
Q Consensus 51 ~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 130 (470)
...+.+.|+++++++|+++||.+|+.||||.++...+++||.+|++.+++.++++........+..+...++++++++++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~ 83 (375)
T 2eh6_A 4 MNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHF 83 (375)
T ss_dssp CSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTS
T ss_pred cccCcCCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhc
Confidence 44556789999999999999999999999999987778999999999999999987643323344455788999999999
Q ss_pred CC-CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC
Q 012138 131 GY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 209 (470)
Q Consensus 131 ~~-~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
|. +++++++||++|++.++++++.+ ..++ .+|++.|++.+++||+....+....+...+...+.+..+++..++++
T Consensus 84 g~~~~v~~~~g~t~a~~~~~~~~~~~--~~~~-~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T 2eh6_A 84 WTEGKVFFANSGTESVEAAIKLARKY--WRDK-GKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLN 160 (375)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHH--HHHT-TCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTT
T ss_pred CCCCeEEEeCchHHHHHHHHHHHHHH--hccC-CCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCc
Confidence 88 89999999999999999875432 1000 14545899999999999887776665544334455555567778888
Q ss_pred CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee
Q 012138 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV 289 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~ 289 (470)
|+++|++++++ ++++|+++|++||+|.+.++++++++|.++|++||++||+||+|++|++.+..+..+.++..+|++
T Consensus 161 d~~~l~~~l~~---~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~ 237 (375)
T 2eh6_A 161 DIDSVYKLLDE---ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237 (375)
T ss_dssp CHHHHHTTCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred hHHHHHHHhcC---CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE
Confidence 99999998875 799999999999999998789999999999999999999999999998887665566677778999
Q ss_pred eccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 290 ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 290 s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
+|||.+++|+ |+|++++++++++.+....++.+++.++++++++.++|+.+. ++.++++++++++.+.|+++.
T Consensus 238 s~SK~~~~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~---- 310 (375)
T 2eh6_A 238 ALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKELG---- 310 (375)
T ss_dssp EECGGGGTTS-CCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT----
T ss_pred EEcccccCCC-CeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh----
Confidence 9999999998 999999999999988765567788899999999999888775 678888889999998887742
Q ss_pred CceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 370 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
. ..+++.|.++++.+.. +..++++.|+++||.+.+++.+++||++++.++++++++++++|++++
T Consensus 311 -~-~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 311 -K-GKVKGRGLMLGLELER-----ECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp -S-SEEEEETTEEEEECSS-----CCHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred -c-CCceEEEEEEEEEEcC-----cHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 1 3446778888887643 356789999999999998778999999999999999999999998764
No 40
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=2.1e-39 Score=327.62 Aligned_cols=365 Identities=14% Similarity=0.102 Sum_probs=284.0
Q ss_pred chHHHHHHHhhhcccC-CCCCceEEE-eecCCEEEeCCCCeEEeccCCcccccCC-CCCHHHHHHHHHHHHHccccCCC-
Q 012138 38 SSQQLINLEYEYSAHN-YHPVPIVFS-QAKGSSIWDPEGNKYLDFLSAYSAVNQG-HCHPKIMKALQEQAEKLTLSSRA- 113 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~-~~~~p~~~~-~~~g~~~~d~~G~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~- 113 (470)
.++++.++.+++.... ..+.+..+. +++|+++|| +|++||||.++ .++| +.||++.+++.++++.+......
T Consensus 26 ~~~~~~~~~~~~~~~g~~~r~~~~~~~~~~g~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~ 101 (427)
T 2w8t_A 26 KFDGLIAERQKLLDSGVTDPFAIVMEQVKSPTEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGS 101 (427)
T ss_dssp GGHHHHHHHHHHHHTTCCCTTCCCCSEEEETTEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSC
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeccccCCCceEee-CCceEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCccc
Confidence 4667777766665554 344455677 999999999 99999999998 3567 68999999999999875432111
Q ss_pred ----CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC
Q 012138 114 ----FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 114 ----~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
...+...+++++++++++.+.+++++||++|+..+++++.. +|+ .|++..++ |+.....+...+.
T Consensus 102 ~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~---------~gd-~vl~~~~~-h~~~~~~~~~~g~ 170 (427)
T 2w8t_A 102 RMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAG---------KGE-YVILDADS-HASIYDGCQQGNA 170 (427)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC---------TTC-EEEEETTC-CHHHHHHHHHSCS
T ss_pred ccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcC---------CCC-EEEECCcc-cHHHHHHHHHcCC
Confidence 13456789999999999999999999999999999887643 344 67666665 6666555544432
Q ss_pred cccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC-CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc
Q 012138 190 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~-~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~ 268 (470)
.+..++++|+++|++++++..+ ++++|++++++||+|.+.| +++|.++|++||++||+||+|+
T Consensus 171 ------------~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~ 234 (427)
T 2w8t_A 171 ------------EIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHS 234 (427)
T ss_dssp ------------EEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred ------------eeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCcc
Confidence 2356778899999999987543 7899999999999999997 9999999999999999999999
Q ss_pred CC--cccCCccccccCCCCcc----eeeccccccCCCcceeEEEecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHH
Q 012138 269 GL--ARSGRMLASDWEEVRPD----MVILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDV 340 (470)
Q Consensus 269 g~--g~~G~~~~~~~~~~~pd----i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~ 340 (470)
++ +++|..+ .+.+++.+| +.||||+++ . +.|++++++++++.+.... ...+++.++++++++.++|+.
T Consensus 235 ~~~~~~~g~~~-~~~~~~~~~~di~~~s~sK~~g--~-~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~ 310 (427)
T 2w8t_A 235 MGFFGPNGRGV-YEAQGLEGQIDFVVGTFSKSVG--T-VGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRK 310 (427)
T ss_dssp TTTSSTTSCCH-HHHTTCTTCCSEEEEESSSTTC--S-CCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHH
T ss_pred ccccCCCCCch-HhhcCCCcCCcEEEecchhhhc--c-CCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHH
Confidence 63 4445443 444566555 569999996 3 6689999999998886542 233567899999999999998
Q ss_pred Hhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-ec-cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC----
Q 012138 341 IRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RG-RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH---- 413 (470)
Q Consensus 341 ~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---- 413 (470)
++. ++++++++++++++.+.|++++ +... .+ .|.++++.+... ....++++.|.++||++.++.
T Consensus 311 ~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~Gi~v~~~~~~~~ 381 (427)
T 2w8t_A 311 LMTAHEKRERLWSNARALHGGLKAMG------FRLGTETCDSAIVAVMLEDQ---EQAAMMWQALLDGGLYVNMARPPAT 381 (427)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHT------CEESCSSCCSSEEEEEESSH---HHHHHHHHHHHHTTEECEEECTTTS
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHcC------CcccCCCCCCCEEEEEECCH---HHHHHHHHHHHHCCeEEeeeCCCCC
Confidence 876 6788999999999999998862 2222 34 677888877532 257889999999999987653
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 414 ---DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 414 ---~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.+++||+++..+|++++++++++|+++++ ++.+
T Consensus 382 ~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~-~~~~ 417 (427)
T 2w8t_A 382 PAGTFLLRCSICAEHTPAQIQTVLGMFQAAGR-AVGV 417 (427)
T ss_dssp CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HHTC
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCc
Confidence 36899999998999999999999999998 7543
No 41
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=1.1e-40 Score=336.37 Aligned_cols=357 Identities=14% Similarity=0.153 Sum_probs=270.5
Q ss_pred CCCCCceEEEeecCCEEEeCC--CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhh
Q 012138 53 NYHPVPIVFSQAKGSSIWDPE--GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF 130 (470)
Q Consensus 53 ~~~~~p~~~~~~~g~~~~d~~--G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 130 (470)
.|...+++.++++|+++||.+ |+.||||..+ .+.++.+|+|.+++.++++...+.+.....++++++++++++.+
T Consensus 37 ~y~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~ 113 (421)
T 3l8a_A 37 RYDFTTRPDRLNQFTYKWKTSENNPELLQMWVA---DMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEH 113 (421)
T ss_dssp -CCCSCCCCCTTTTBTTTGGGTTCTTCEECCSS---CCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHH
T ss_pred hccCCcccccCCCCCccccccCCCCCeeecccC---CCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 455567889999999999999 8999999777 44556899999999999987544333333556778888888876
Q ss_pred C----CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--CCee
Q 012138 131 G----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--PGHL 204 (470)
Q Consensus 131 ~----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~ 204 (470)
+ .++|++++||++|++.+++++.. +| +.|++..++||+........+... .. .++. .+.+
T Consensus 114 g~~~~~~~v~~~~g~~ea~~~a~~~~~~---------~g-d~Vi~~~~~y~~~~~~~~~~g~~~-~~---~~~~~~~~~~ 179 (421)
T 3l8a_A 114 DYAVVKEDILFIDGVVPAISIALQAFSE---------KG-DAVLINSPVYYPFARTIRLNDHRL-VE---NSLQIINGRF 179 (421)
T ss_dssp CCCCCGGGEEEESCHHHHHHHHHHHHSC---------TE-EEEEEEESCCHHHHHHHHHTTEEE-EE---EECEEETTEE
T ss_pred CCCCCHHHEEEcCCHHHHHHHHHHHhcC---------CC-CEEEECCCCcHHHHHHHHHCCCEE-Ee---ccccccCCCe
Confidence 6 46799999999999999998754 34 478899999998766544433211 11 1110 1111
Q ss_pred eecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-cc----
Q 012138 205 KVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-AS---- 279 (470)
Q Consensus 205 ~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~---- 279 (470)
.+ |+++|++++++. ++++|++++++||+|.++ +++++++|+++|++||++||+||+|++++++|..+ .+
T Consensus 180 ~~---d~~~le~~i~~~--~~~~vil~~p~nptG~~~-~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 253 (421)
T 3l8a_A 180 EI---DFEQLEKDIIDN--NVKIYLLCSPHNPGGRVW-DNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLD 253 (421)
T ss_dssp EC---CHHHHHHHHHHT--TEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred ee---CHHHHHHHhhcc--CCeEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcC
Confidence 22 899999999842 789999888899999888 88899999999999999999999999998887532 11
Q ss_pred -ccCCCCcceeecccccc-CCCcceeEEEec-HHHHhhcCcCC-ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHH
Q 012138 280 -DWEEVRPDMVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHL 353 (470)
Q Consensus 280 -~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~-~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~ 353 (470)
+..+..+++.++||+++ +|+ |+|+++++ +++++.+.... ...++++|+++++++.++++..++ +++.++++++
T Consensus 254 ~~~~~~~i~~~s~sK~~g~~G~-~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~ 332 (421)
T 3l8a_A 254 ASYKDFTIILSSATKTFNIAGT-KNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGN 332 (421)
T ss_dssp TTGGGTEEEEECSHHHHTCGGG-CCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chhcCcEEEEEeChhhccCchh-heEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 22344567889999998 898 99999988 89988887654 334557999999999999885432 4566677777
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCC
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSI 425 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~ 425 (470)
++++.+.|+++ | .+..+++.|.++. +.+.... .+..++.+.|+++ ||++.++ +.+++||+++ +
T Consensus 333 ~~~l~~~L~~~----~-~i~~~~~~~~~~~~v~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~ 403 (421)
T 3l8a_A 333 IKLVIKELEAK----T-KIKVMEPEGTYLVWLDFSAYA--IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--T 403 (421)
T ss_dssp HHHHHHHHHHH----C-SCEEECCSBSSEEEEECGGGT--CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--S
T ss_pred HHHHHHHHHhC----C-CceEeCCCeeEEEEEeccccC--CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--C
Confidence 77777777665 2 5677788888887 5554311 2566889999765 9999874 3689999976 6
Q ss_pred CHHHHHHHHHHHHHHHh
Q 012138 426 SSNELQEGSKALHDVLE 442 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~ 442 (470)
++++|++++++|+++++
T Consensus 404 ~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 404 PKNTVQEALSRIISVFG 420 (421)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 42
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.3e-37 Score=311.28 Aligned_cols=351 Identities=18% Similarity=0.245 Sum_probs=274.5
Q ss_pred cCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCC-CCCHHHHHHHHHHHHHccccCC--CC---CCCcHHHHHHH
Q 012138 52 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQG-HCHPKIMKALQEQAEKLTLSSR--AF---YNDKFPVFAER 125 (470)
Q Consensus 52 ~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~--~~---~~~~~~~l~~~ 125 (470)
....+.+..+++++|.++|| +|++||||.++ .++| +++|++.+++.++++.+...+. .+ ..+...+++++
T Consensus 21 ~~~~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 96 (399)
T 3tqx_A 21 AGLYKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKD 96 (399)
T ss_dssp TTCCCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHH
T ss_pred cCCccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHH
Confidence 34445677889999999999 99999999998 5677 6899999999999987654321 11 23447899999
Q ss_pred HhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeee
Q 012138 126 LTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK 205 (470)
Q Consensus 126 l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (470)
++++++.+..+++++|++|+..+++.+.. +++ .|++..++ |+.........+. .+..
T Consensus 97 la~~~~~~~~i~~~sGt~a~~~~l~~~~~---------~gd-~v~~~~~~-~~~~~~~~~~~g~------------~~~~ 153 (399)
T 3tqx_A 97 ISEFLGTDDTILYSSCFDANGGLFETLLG---------PED-AIISDELN-HASIIDGIRLCKA------------QRYR 153 (399)
T ss_dssp HHHHHTCSEEEEESCHHHHHHTTHHHHCC---------TTC-EEEEETTC-CHHHHHHHHSCCS------------EEEE
T ss_pred HHHHHCCCcEEEECchHHHHHHHHHHhcC---------CCC-EEEECCcc-cHHHHHHHHHcCC------------ceeE
Confidence 99999988888888999999999887643 344 77777776 4554444444332 1356
Q ss_pred ecCCCHHHHHHHHHhcCC---CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC-cccCCccccc
Q 012138 206 VDFGDITALEKIFKESGD---QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL-ARSGRMLASD 280 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~---~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~-g~~G~~~~~~ 280 (470)
+++.|+++|++++++... ++++|++++++||+|.+.| +++|.++|++||++||+||+|+ |+ +..+.. ..+
T Consensus 154 ~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~ 228 (399)
T 3tqx_A 154 YKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG-TPE 228 (399)
T ss_dssp ECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHH
T ss_pred eCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHH
Confidence 677799999999987533 7899999999999999997 9999999999999999999995 54 444443 244
Q ss_pred cCCC--Cccee--eccccccCCCcceeEEEecHHHHhhcCcCCc--cCCCCCCHHHHHHHHHHHHHH-h-hhhHHHHHHH
Q 012138 281 WEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH--GSTFGGNPLASAVAIASLDVI-R-DEKLAERSAH 352 (470)
Q Consensus 281 ~~~~--~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~~-~-~~~~~~~~~~ 352 (470)
.+++ .+|++ ++||+++ |+ +.|++++++++++.+..... ..+.+.++++++++.++++.+ + .+++++++++
T Consensus 229 ~~~~~~~~di~~~s~sK~~~-g~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 306 (399)
T 3tqx_A 229 YCGVADRVDILTGTLGKALG-GA-SGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQE 306 (399)
T ss_dssp HHTCTTCCSEEEEESSSSSC-SS-CCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhCCCCCCcEEEecchHhcc-cC-ceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4554 67887 9999999 66 88999999999988865322 223468899999999999887 3 2678889999
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-------CCCEEEEecCCCC
Q 012138 353 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSI 425 (470)
Q Consensus 353 ~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~iR~~~~~~~ 425 (470)
+++++.+.|++++. ...++.|.++++.+... .+..++++.|.++||.+.++ +.+++||+++..+
T Consensus 307 ~~~~l~~~L~~~g~------~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~ 377 (399)
T 3tqx_A 307 NSRYFRAGMEKLGF------QLVPGNHPIIPVMLGDA---QLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVH 377 (399)
T ss_dssp HHHHHHHHHHHHTC------CBCCCSSSEEEEEEECH---HHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHcCC------CcCCCCCCEEEEEeCCH---HHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCC
Confidence 99999999988732 22367888888877543 26789999999999998743 3469999999899
Q ss_pred CHHHHHHHHHHHHHHHhcccC
Q 012138 426 SSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+++++++++++|+++++ ++.
T Consensus 378 ~~~~i~~~~~~l~~~~~-~~~ 397 (399)
T 3tqx_A 378 TQQQLDRAIEAFGQVGK-KLG 397 (399)
T ss_dssp CHHHHHHHHHHHHHHHH-HTT
T ss_pred CHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999999999998 753
No 43
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=1.2e-36 Score=304.76 Aligned_cols=351 Identities=18% Similarity=0.273 Sum_probs=271.1
Q ss_pred CCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC--CC---CCCcHHHHHHHH
Q 012138 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR--AF---YNDKFPVFAERL 126 (470)
Q Consensus 53 ~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~--~~---~~~~~~~l~~~l 126 (470)
...+.|.++.+++|+++||.+|+.||||.++ .++|+ ++|++.+++.++++.+..... .+ ..+...++++.+
T Consensus 23 ~~~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 99 (401)
T 1fc4_A 23 GLFKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKL 99 (401)
T ss_dssp TCCCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHH
T ss_pred CCeeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHH
Confidence 3445788899999999999999999999988 46886 899999999999987543221 11 145578899999
Q ss_pred hhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeee
Q 012138 127 TSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV 206 (470)
Q Consensus 127 ~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (470)
++++|.+..+++++|++|+..+++++.. +++ .|++..++ |+.....+...+. .+..+
T Consensus 100 a~~~g~~~~i~~~sGs~a~~~~~~~~~~---------~gd-~v~~~~~~-~~~~~~~~~~~g~------------~~~~~ 156 (401)
T 1fc4_A 100 AAFLGMEDAILYSSCFDANGGLFETLLG---------AED-AIISDALN-HASIIDGVRLCKA------------KRYRY 156 (401)
T ss_dssp HHHHTCSEEEEESCHHHHHHTTHHHHCC---------TTC-EEEEETTC-CHHHHHHHHTSCS------------EEEEE
T ss_pred HHHhCCCcEEEeCChHHHHHHHHHHHcC---------CCC-EEEEcchh-HHHHHHHHHHcCC------------ceEEE
Confidence 9999988888889999999998887643 444 67666666 5554444433331 13456
Q ss_pred cCCCHHHHHHHHHhcCC---CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCc-ccCCcccccc
Q 012138 207 DFGDITALEKIFKESGD---QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA-RSGRMLASDW 281 (470)
Q Consensus 207 ~~~d~~~Le~~l~~~~~---~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g-~~G~~~~~~~ 281 (470)
++.|+++|++++++..+ ++++|++++++||+|.+.+ +++|.++|++||++||+||+|+ |+. ++|..+ .+.
T Consensus 157 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~ 231 (401)
T 1fc4_A 157 ANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEY 231 (401)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHH
T ss_pred CCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHH
Confidence 66799999999976322 5789998888999999997 9999999999999999999996 873 456543 222
Q ss_pred CCCC--ccee--eccccccCCCcceeEEEecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHH
Q 012138 282 EEVR--PDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLG 354 (470)
Q Consensus 282 ~~~~--pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~ 354 (470)
.++. .|++ ++||.++|+. .|++++++++++.+.... ...+++.++++++++.++++.+.+ +++.+++++++
T Consensus 232 ~~~~~~~di~~~s~sK~~~~~~--gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 309 (401)
T 1fc4_A 232 CDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANA 309 (401)
T ss_dssp TTCTTCCSEEEEESSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCcCCcEEEecchhhccCCC--CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3433 3666 9999997764 489999999988876433 223567899999999999998764 67888999999
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------CCEEEEecCCCCCH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------DTIVRLTPPLSISS 427 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~iR~~~~~~~t~ 427 (470)
+++.+.|++++ ++ . ..+.|.++++.+... .+..++.+.|.++||.+.++. .+++||+++..+++
T Consensus 310 ~~l~~~L~~~g--~~-~---~~~~~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~ 380 (401)
T 1fc4_A 310 RQFREQMSAAG--FT-L---AGADHAIIPVMLGDA---VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTP 380 (401)
T ss_dssp HHHHHHHHHTT--CC-B---CCSSSSEEEEEEECH---HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCH
T ss_pred HHHHHHHHHcC--Cc-c---cCCCCCEEEEEcCCh---HHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCH
Confidence 99999998762 21 2 246788888877532 367789999999999987653 35899999888999
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 012138 428 NELQEGSKALHDVLELDLP 446 (470)
Q Consensus 428 e~i~~~~~~l~~~l~~~~~ 446 (470)
+++++++++|+++++ ++.
T Consensus 381 ~~i~~~~~~l~~~~~-~~~ 398 (401)
T 1fc4_A 381 EQITRAVEAFTRIGK-QLG 398 (401)
T ss_dssp HHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHH-HhC
Confidence 999999999999998 764
No 44
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=5.1e-37 Score=306.08 Aligned_cols=355 Identities=15% Similarity=0.166 Sum_probs=262.6
Q ss_pred eEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC----CCe
Q 012138 59 IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----YDM 134 (470)
Q Consensus 59 ~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~ 134 (470)
++.++++|+++||.+|++||||..+ .+..+.+|++.+++.++++...+.+.....++++++++++++.++ .++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIA---EMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSS---CCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceecccc---CCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6778899999999999999999987 344558999999999998764332222234556778888887766 568
Q ss_pred EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--CCeeeecCCCHH
Q 012138 135 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--PGHLKVDFGDIT 212 (470)
Q Consensus 135 v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~ 212 (470)
+++++||++|++.+++.+.. +|+ .|++..++||+........+... . +.+.. .+...+ |++
T Consensus 88 i~~~~g~~~a~~~~~~~l~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~~-~---~~~~~~~~~~~~~---d~~ 150 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQFTS---------PGD-QILVQEPVYNMFYSVIEGNGRRV-I---SSDLIYENSKYSV---NWA 150 (391)
T ss_dssp EEEESCHHHHHHHHHHHHSC---------TTC-EEEECSSCCHHHHHHHHHTTCEE-E---ECCCEEETTEEEC---CHH
T ss_pred EEECCCHHHHHHHHHHHhCC---------CCC-eEEECCCCcHHHHHHHHHcCCEE-E---EeeeeecCCceee---cHH
Confidence 99999999999999998743 454 88899999987655444332211 1 11110 111112 899
Q ss_pred HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccCCC-Ccc---
Q 012138 213 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEV-RPD--- 287 (470)
Q Consensus 213 ~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~~~-~pd--- 287 (470)
+|++++++. ++++|+++.++||+|.++ +++.+++|.++|++||++||+||+|+++.+.|.. ......+. .+|
T Consensus 151 ~l~~~l~~~--~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i 227 (391)
T 3dzz_A 151 DLEEKLATP--SVRMMVFCNPHNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVV 227 (391)
T ss_dssp HHHHHHTST--TEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEE
T ss_pred HHHHHHhcc--CceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEE
Confidence 999999742 788888777799999999 8888999999999999999999999988877743 23333332 267
Q ss_pred -eeecccccc-CCCcceeEEEec-HHHHhhcCcCCc-cCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHH
Q 012138 288 -MVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEH-GSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 288 -i~s~sK~l~-gG~~~ig~v~~~-~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L 361 (470)
+.++||.++ +|+ |+|+++++ +++++.+..... ..+++.++++++++.++++...+ +.+.++.+++.+++.+.|
T Consensus 228 ~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (391)
T 3dzz_A 228 SLISPSKTFNLAAL-HAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFL 306 (391)
T ss_dssp EEECSHHHHTCTTT-CCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeChhhccccch-hheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999998 898 99999997 888888765432 34567889999999888876332 456666777777777777
Q ss_pred HHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHH
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~ 433 (470)
++. +| .+....+.+.++. +.+.... .+..++.+.|+ ++||.+.++. .+++|++++ +++++++++
T Consensus 307 ~~~---~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~ 378 (391)
T 3dzz_A 307 AKE---VP-EVKVLDSNASYLAWVDISALG--MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDG 378 (391)
T ss_dssp HHH---CT-TSEECCCCBSSEEEEECGGGC--SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHH
T ss_pred Hhh---CC-CcEEeccCceEEEEEehhhcC--CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHH
Confidence 663 22 3444455666555 5454321 36788999996 7899998753 489999965 799999999
Q ss_pred HHHHHHHHhcccC
Q 012138 434 SKALHDVLELDLP 446 (470)
Q Consensus 434 ~~~l~~~l~~~~~ 446 (470)
+++|.++++ +++
T Consensus 379 l~~l~~~l~-~~~ 390 (391)
T 3dzz_A 379 MQRLKQGVL-NLN 390 (391)
T ss_dssp HHHHHHHHH-TCC
T ss_pred HHHHHHHHH-Hhh
Confidence 999999998 764
No 45
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=7.9e-37 Score=303.27 Aligned_cols=343 Identities=15% Similarity=0.146 Sum_probs=254.8
Q ss_pred EEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc-cCCCCCCCcHHHHHHHHhhhhC----CCeE
Q 012138 61 FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-SSRAFYNDKFPVFAERLTSMFG----YDMV 135 (470)
Q Consensus 61 ~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~----~~~v 135 (470)
..+++|+++||.+|++||||.++. +..+.+|++.+++.++++...+ ++... .++++.+++++.+.++ .+++
T Consensus 9 ~~~~~g~~~~d~~g~~~idl~~~~---~~~~~~~~v~~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~~~i 84 (377)
T 3fdb_A 9 DLRARNTMKWTRYGQGVLPLWVAE---SDFSTCPAVLQAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARPEWI 84 (377)
T ss_dssp HHHHTCCHHHHSSCTTSEECCSSC---CCSCCCHHHHHHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HhcCCCCceeeccCCCeeeecccC---CCCCCCHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCHHHE
Confidence 348999999999999999999884 3334899999999999976322 22222 6677788888776643 4689
Q ss_pred EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC---CHH
Q 012138 136 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---DIT 212 (470)
Q Consensus 136 ~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~ 212 (470)
++|+||++|++.+++.+.. +|+ .|++..++|++........+.. +..++.+ |++
T Consensus 85 ~~t~g~~~a~~~~~~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~d~~ 141 (377)
T 3fdb_A 85 FPIPDVVRGLYIAIDHFTP---------AQS-KVIVPTPAYPPFFHLLSATQRE-------------GIFIDATGGINLH 141 (377)
T ss_dssp EEESCHHHHHHHHHHHHSC---------TTC-CEEEEESCCTHHHHHHHHHTCC-------------EEEEECTTSCCHH
T ss_pred EEeCChHHHHHHHHHHhcC---------CCC-EEEEcCCCcHhHHHHHHHcCCE-------------EEEccCCCCCCHH
Confidence 9999999999999997754 454 7888999998766544433322 1233332 899
Q ss_pred HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC-Cc----cccccCCCCcc
Q 012138 213 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG-RM----LASDWEEVRPD 287 (470)
Q Consensus 213 ~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G-~~----~~~~~~~~~pd 287 (470)
+|++++++ ++++++++.++||+|.++ +.+++++|+++|++||+++|+||+|+++.+.| .. ..++..+..++
T Consensus 142 ~l~~~l~~---~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~ 217 (377)
T 3fdb_A 142 DVEKGFQA---GARSILLCNPYNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCIT 217 (377)
T ss_dssp HHHHHHHT---TCCEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEE
T ss_pred HHHHHhcc---CCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEE
Confidence 99999987 456666555599999999 88889999999999999999999999987777 22 12212222345
Q ss_pred eeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH
Q 012138 288 MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 288 i~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~ 363 (470)
+.++||.++ +|+ |+|+++. ++++++.+.......+++.++++++++.++++..++ ++..++++++++++.+.|++
T Consensus 218 ~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 296 (377)
T 3fdb_A 218 ITAPSKAWNIAGL-KCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPK 296 (377)
T ss_dssp EECSTTTTTCGGG-CCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeChHhccCcch-hheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 679999996 888 9998775 788888887666666788999999999988876432 45666777777777777766
Q ss_pred HHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHHHc-CceeccCC------CCEEEEecCCCCCHHHHHHHHH
Q 012138 364 IQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 364 l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
. +| .+....+.+.++. +.+.... ...++++.|+++ ||.+.|+. .+++|++++ .++++++++++
T Consensus 297 ~---~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~ 367 (377)
T 3fdb_A 297 R---IP-GAKITPMQATYLMWIDFRDTT---IEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAID 367 (377)
T ss_dssp H---ST-TCEECCCSBCSEEEEECTTSC---CCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHH
T ss_pred h---CC-CceEecCCeeEEEEEECcccC---CCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHH
Confidence 3 22 3445566666664 5554322 124677788776 99998753 689999965 58999999999
Q ss_pred HHHHHHhccc
Q 012138 436 ALHDVLELDL 445 (470)
Q Consensus 436 ~l~~~l~~~~ 445 (470)
+|.++++ ++
T Consensus 368 ~l~~~l~-~~ 376 (377)
T 3fdb_A 368 RMAKAVS-HH 376 (377)
T ss_dssp HHHHHHT-TC
T ss_pred HHHHHHh-hc
Confidence 9999998 64
No 46
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=5.1e-36 Score=297.98 Aligned_cols=352 Identities=14% Similarity=0.146 Sum_probs=246.9
Q ss_pred ceEEEeecCCEEEeCC-CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC----C
Q 012138 58 PIVFSQAKGSSIWDPE-GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----Y 132 (470)
Q Consensus 58 p~~~~~~~g~~~~d~~-G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~ 132 (470)
+++.++++|+++||.. |+.+|||..+. +..+.+|++.+++.++++...+.+.....++++++++++++.++ .
T Consensus 6 ~~~~~~~~g~~~~d~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~ 82 (383)
T 3kax_A 6 KTVNRRGTHSIKWDTYKNEELIHAWIAD---MDFEVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDIQK 82 (383)
T ss_dssp -------------CCCSSSCCEECCCSS---CSSCCCHHHHHHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCCCCG
T ss_pred ceeeccCCCceeeeccCCCCeeeccccc---CCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh
Confidence 4667899999999955 58999999884 33448999999999999764332222356788999999998876 4
Q ss_pred CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC--CeeeecCCC
Q 012138 133 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP--GHLKVDFGD 210 (470)
Q Consensus 133 ~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d 210 (470)
+++++|+||++|++.+++.+.. +|+ .|++..++|++........+... . +.+..+ +...+ |
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~~-~---~~~~~~~~~~~~~---d 145 (383)
T 3kax_A 83 EWIVFSAGIVPALSTSIQAFTK---------ENE-SVLVQPPIYPPFFEMVTTNNRQL-C---VSPLQKQNDTYAI---D 145 (383)
T ss_dssp GGEEEESCHHHHHHHHHHHHCC---------TTC-EEEECSSCCHHHHHHHHHTTCEE-E---ECCCEEETTEEEC---C
T ss_pred hhEEEcCCHHHHHHHHHHHhCC---------CCC-EEEEcCCCcHHHHHHHHHcCCEE-E---eccceecCCcEEE---c
Confidence 6799999999999999998753 454 88899999987665443332211 1 011100 01122 8
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-cccc-----CCC
Q 012138 211 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDW-----EEV 284 (470)
Q Consensus 211 ~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~-----~~~ 284 (470)
+++|+++++. ++++|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.++|..+ .+.. .+.
T Consensus 146 ~~~l~~~l~~---~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 221 (383)
T 3kax_A 146 FEHLEKQFQQ---GVKLMLLCSPHNPIGRVW-KKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAAR 221 (383)
T ss_dssp HHHHHHHHTT---TCCEEEEESSBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTT
T ss_pred HHHHHHHhCc---CCeEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCc
Confidence 9999999943 778887666799999999 88999999999999999999999999988777432 1111 133
Q ss_pred Ccceeecccccc-CCCcceeEEEe-cHHHHhhcCcCCcc-CCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Q 012138 285 RPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHG-STFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQ 359 (470)
Q Consensus 285 ~pdi~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~-~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~ 359 (470)
.+.+.++||.++ +|+ |+|++++ ++++++.+...... .+++.++++++++.++++..++ +++.++++++.+++.+
T Consensus 222 ~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 300 (383)
T 3kax_A 222 TITCMAPSKTFNIAGL-QASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACE 300 (383)
T ss_dssp EEEEECSHHHHTCGGG-CCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChhhccCcch-hheEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999 898 9999998 68888877654333 3457899999999888865321 4456666777777777
Q ss_pred HHHHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHH-HcCceeccC------CCCEEEEecCCCCCHHHHH
Q 012138 360 HLFKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMK-ERGILAKPT------HDTIVRLTPPLSISSNELQ 431 (470)
Q Consensus 360 ~L~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~------~~~~iR~~~~~~~t~e~i~ 431 (470)
.|++. +| .+....+.+.++. +.+.... .+..++++.|+ ++||.+.++ ..+++|++++ .++++++
T Consensus 301 ~l~~~---~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~ 372 (383)
T 3kax_A 301 YIKDH---IP-TLSVMKPEGSFLLWIDCSALN--LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIG--CPRSVLE 372 (383)
T ss_dssp HHHHH---CT-TCEECCCSBSSEEEEECGGGC--CCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECS--SCHHHHH
T ss_pred HHHhh---CC-CceEecCCceEEEEEEccccC--CCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEc--CCHHHHH
Confidence 76653 22 3555566666666 5454321 26788999998 579999875 2589999965 6999999
Q ss_pred HHHHHHHHHHh
Q 012138 432 EGSKALHDVLE 442 (470)
Q Consensus 432 ~~~~~l~~~l~ 442 (470)
+++++|.+++.
T Consensus 373 ~~l~~l~~~l~ 383 (383)
T 3kax_A 373 EILNRLRHTFS 383 (383)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998863
No 47
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=1.8e-35 Score=295.86 Aligned_cols=346 Identities=14% Similarity=0.179 Sum_probs=264.7
Q ss_pred CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhh
Q 012138 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSM 129 (470)
Q Consensus 56 ~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~ 129 (470)
+.|+++++++|.++| .+|+.++||.++. ++|+ .+|++.+++.++++....... ....+.+.+++++++++
T Consensus 25 ~~~~~~~~~~g~~~~-~~g~~~idl~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 100 (398)
T 3a2b_A 25 AYFRPIQSKQDTEVK-IDGRRVLMFGSNS---YLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAY 100 (398)
T ss_dssp CSSCCBCSCSSSEEE-ETTEEEEECSCSC---TTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred cceeeecCCCCceEE-ECCceEEEeeccc---ccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHH
Confidence 478889999999999 8999999999883 3566 789999999999876543211 12346688999999999
Q ss_pred hCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC
Q 012138 130 FGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 209 (470)
Q Consensus 130 ~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
++.+++++++||++|++.+++++.. +|+ .|++..++| +.....+...+.. +..+++.
T Consensus 101 ~g~~~v~~~~ggt~a~~~~~~~~~~---------~gd-~V~~~~p~~-~~~~~~~~~~g~~------------~~~v~~~ 157 (398)
T 3a2b_A 101 VGKEAAILFSTGFQSNLGPLSCLMG---------RND-YILLDERDH-ASIIDGSRLSFSK------------VIKYGHN 157 (398)
T ss_dssp HTCSEEEEESSHHHHHHHHHHHSSC---------TTC-EEEEETTCC-HHHHHHHHHSSSE------------EEEECTT
T ss_pred hCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEECCccC-HHHHHHHHHcCCc------------eEEeCCC
Confidence 9999999999999999999987743 444 777788775 4444444433321 3456667
Q ss_pred CHHHHHHHHHhcCC-CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCCC-
Q 012138 210 DITALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVR- 285 (470)
Q Consensus 210 d~~~Le~~l~~~~~-~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~~- 285 (470)
|+++|++++++..+ ++++|++++++||+|.+.+ +++|.++|++||++||+||+|+. +++.+..+ .+.+++.
T Consensus 158 d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~ 232 (398)
T 3a2b_A 158 NMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLND 232 (398)
T ss_dssp CHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGG
T ss_pred CHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCc
Confidence 99999999987432 6889998888999999997 99999999999999999999974 34444433 2333432
Q ss_pred -ccee--eccccccCCCcceeEEEecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Q 012138 286 -PDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQ 359 (470)
Q Consensus 286 -pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~ 359 (470)
+|++ +|||.++. +.|++++++++++.+.... ...+...++..++++.++|+.++. ++++++++++++++.+
T Consensus 233 ~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 309 (398)
T 3a2b_A 233 DVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKA 309 (398)
T ss_dssp GCSEEEEESSSTTCS---SCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CCeEEEecccccccC---CCcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 4776 99999983 1178999999988876532 344555777777777788887644 5688888999999999
Q ss_pred HHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------CCEEEEecCCCCCHHHHHH
Q 012138 360 HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------DTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 360 ~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~iR~~~~~~~t~e~i~~ 432 (470)
.|++++ + ....+.|.++++.+... .+..++++.|.++||.+.++. .+++|++++..++++++++
T Consensus 310 ~L~~~g--~----~~~~~~g~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~ 380 (398)
T 3a2b_A 310 QLLDHG--F----DLGATESPILPIFIRSN---EKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDE 380 (398)
T ss_dssp HHHHTT--C----CBCSCCSSEEEEECCCH---HHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHH
T ss_pred HHHhcC--C----CcCCCCCCEEEEEcCCH---HHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHH
Confidence 998752 2 22345678877766431 367889999999999998753 4789999888889999999
Q ss_pred HHHHHHHHHhcccC
Q 012138 433 GSKALHDVLELDLP 446 (470)
Q Consensus 433 ~~~~l~~~l~~~~~ 446 (470)
++++|+++++ ++.
T Consensus 381 ~~~~l~~~l~-~~~ 393 (398)
T 3a2b_A 381 AIEKMVKVFK-QAE 393 (398)
T ss_dssp HHHHHHHHHH-HCC
T ss_pred HHHHHHHHHH-HhC
Confidence 9999999998 763
No 48
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=4.3e-35 Score=291.64 Aligned_cols=349 Identities=20% Similarity=0.250 Sum_probs=264.0
Q ss_pred hhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCC-CCCHHHHHHHHHHHHHccccC--CC---CCCCcHHH
Q 012138 48 EYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQG-HCHPKIMKALQEQAEKLTLSS--RA---FYNDKFPV 121 (470)
Q Consensus 48 ~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~--~~---~~~~~~~~ 121 (470)
+.....+.+.|.++.+++|+++| .+|+.||||.++. ++| +.+|++.+++.++++.....+ .. ...+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~id~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (384)
T 1bs0_A 13 ARRAADALRRRYPVAQGAGRWLV-ADDRQYLNFSSND---YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQA 88 (384)
T ss_dssp HCCGGGCCCCCCCCSBCSSSEEE-ETTEEEEECSCCC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHH
T ss_pred HHHhcCCccccccccCCCCceEE-ECCceEEEeeccC---ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHH
Confidence 33344455678889999999999 7999999999873 356 589999999999998743211 11 13356789
Q ss_pred HHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC
Q 012138 122 FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP 201 (470)
Q Consensus 122 l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 201 (470)
+++.+++++|.+.++++++|++|+..+++.+.. +|+ .|++..+. |+.....+...+..
T Consensus 89 l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~---------~gd-~v~~~~~~-~~~~~~~~~~~g~~----------- 146 (384)
T 1bs0_A 89 LEEELAEWLGYSRALLFISGFAANQAVIAAMMA---------KED-RIAADRLS-HASLLEAASLSPSQ----------- 146 (384)
T ss_dssp HHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC---------TTC-EEEEETTC-CHHHHHHHHTSSSE-----------
T ss_pred HHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCC---------CCc-EEEEcccc-cHHHHHHHHHcCCC-----------
Confidence 999999999988888999999999999987643 344 66666655 66655555444321
Q ss_pred CeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC-cccCCcccc
Q 012138 202 GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL-ARSGRMLAS 279 (470)
Q Consensus 202 ~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~-g~~G~~~~~ 279 (470)
+..+|+.|+++|++++++..+++++|++++++||+|.+.| +++|.++|++||++||+||+|+ ++ +++|..+ .
T Consensus 147 -~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~ 220 (384)
T 1bs0_A 147 -LRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-C 220 (384)
T ss_dssp -EEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-H
T ss_pred -EEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-H
Confidence 3566777999999999875334788888888999999997 9999999999999999999997 43 4455543 2
Q ss_pred ccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHH
Q 012138 280 DWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAH 352 (470)
Q Consensus 280 ~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~ 352 (470)
+.++..+|++ ++||.++. +.|++++++++++.+.... ...+.+.++++++++.++++.+.+ +++.+++++
T Consensus 221 ~~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 297 (384)
T 1bs0_A 221 WLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAA 297 (384)
T ss_dssp HHTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HhcCCCCcEEEeeccchhhc---cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4455567887 99999973 4488999999988776432 223346899999999999988762 467788888
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------CCEEEEecCCCC
Q 012138 353 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------DTIVRLTPPLSI 425 (470)
Q Consensus 353 ~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~iR~~~~~~~ 425 (470)
+++++.+.|++++ +....+.|.++++.+... .+..++.+.|.++||.+.++. .+++||+++..+
T Consensus 298 ~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~ 368 (384)
T 1bs0_A 298 LITRFRAGVQDLP------FTLADSCSAIQPLIVGDN---SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAH 368 (384)
T ss_dssp HHHHHHHHHTTSS------CEECSCCSSBCCEEEESH---HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTC
T ss_pred HHHHHHHHHHhcC------CcccCCCCCEEEEEeCCH---HHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCC
Confidence 8888888887641 222236677777766432 367889999999999998652 378999999888
Q ss_pred CHHHHHHHHHHHHHH
Q 012138 426 SSNELQEGSKALHDV 440 (470)
Q Consensus 426 t~e~i~~~~~~l~~~ 440 (470)
+++++++++++|+++
T Consensus 369 ~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 369 EMQDIDRLLEVLHGN 383 (384)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
No 49
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=8.6e-36 Score=299.41 Aligned_cols=337 Identities=14% Similarity=0.137 Sum_probs=260.3
Q ss_pred EeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhhhCCCeE
Q 012138 62 SQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFGYDMV 135 (470)
Q Consensus 62 ~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~v 135 (470)
.++.+.+++|.+|++||||.++ ..+|. .||++.+++.++++++..... ....+...+++++++++++.+..
T Consensus 46 ~~~~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~ 122 (409)
T 3kki_A 46 KNGKHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDEC 122 (409)
T ss_dssp TTSSCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEE
T ss_pred cCCCeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeE
Confidence 4677888899999999999887 33444 689999999999987543211 12346678899999999999988
Q ss_pred EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHH
Q 012138 136 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALE 215 (470)
Q Consensus 136 ~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le 215 (470)
+++++|++|+..+++++.. +|+ .|++..+. |+....++...+.. ...++++|+++|+
T Consensus 123 i~~~sGt~a~~~~l~~~~~---------~gd-~Vl~~~~~-~~~~~~~~~~~g~~------------~~~~~~~d~~~le 179 (409)
T 3kki_A 123 LLSQSGWNANVGLLQTICQ---------PNT-NVYIDFFA-HMSLWEGARYANAQ------------AHPFMHNNCDHLR 179 (409)
T ss_dssp EEESCHHHHHHHHHHHHCC---------TTC-EEEEETTS-CHHHHHHHHHTTCE------------EEEECTTCHHHHH
T ss_pred EEecchHHHHHHHHHHhcC---------CCC-EEEECCCc-CHHHHHHHHHcCCe------------EEEecCCCHHHHH
Confidence 8999999999999987753 454 67766666 55555544444321 2456667999999
Q ss_pred HHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCC--Ccce--e
Q 012138 216 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEV--RPDM--V 289 (470)
Q Consensus 216 ~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~--~pdi--~ 289 (470)
+++++. ++++|++++++||+|.+.| +++|.++|++||++||+||+|++ ++++|..+. ..+++ .+|+ .
T Consensus 180 ~~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~ 252 (409)
T 3kki_A 180 MLIQRH--GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTA 252 (409)
T ss_dssp HHHHHH--CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEE
T ss_pred HHHHhc--CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEe
Confidence 999874 4689999999999999997 99999999999999999999997 777776653 33444 3566 6
Q ss_pred eccccccCCCcceeEEEecHHHHhhcCcCCccC--CCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHh
Q 012138 290 ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS--TFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 290 s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
|+||++++| .|++++++++++.+....... +.+.++++++++.++++.+++ +.++++++++++++.+.|++++.
T Consensus 253 s~sK~~~~~---gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 329 (409)
T 3kki_A 253 SLAKTFAYR---AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGL 329 (409)
T ss_dssp ESSSTTCSS---CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ecchhhCCC---ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999865 488999998888775432222 223688899999999998766 57888889999999999887632
Q ss_pred hCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc-------CCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 367 QFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-------THDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 367 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
. +.+.+.++++.+... .+..++++.|.++||++.+ .+.+++||+++..+|+++|++++++|++
T Consensus 330 ~-------~~~~~~~~~~~~~~~---~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~ 399 (409)
T 3kki_A 330 T-------IRSESQIIGLETGDE---RNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSD 399 (409)
T ss_dssp C-------CCCSSSEEEEEEESH---HHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred c-------cCCCCCEEEEEeCCH---HHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHH
Confidence 1 125777888777543 2567899999999999853 3467999999999999999999999999
Q ss_pred HHhccc
Q 012138 440 VLELDL 445 (470)
Q Consensus 440 ~l~~~~ 445 (470)
+++ ..
T Consensus 400 ~l~-~~ 404 (409)
T 3kki_A 400 AVN-YG 404 (409)
T ss_dssp HHH-HS
T ss_pred HHh-cC
Confidence 998 53
No 50
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=7.5e-36 Score=297.63 Aligned_cols=351 Identities=15% Similarity=0.127 Sum_probs=255.2
Q ss_pred ceEEEeecCCEEEeCCCCe-----EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC-
Q 012138 58 PIVFSQAKGSSIWDPEGNK-----YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG- 131 (470)
Q Consensus 58 p~~~~~~~g~~~~d~~G~~-----~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 131 (470)
.++.++++|+++||.+|++ ++||..+ .+..+.+|++.+++.++++...+.......++++++++++++.++
T Consensus 10 ~~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~ 86 (391)
T 4dq6_A 10 EIVDRSNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNW 86 (391)
T ss_dssp SCCCCTTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCC
T ss_pred cccccccCCceeeeecccccCCCCceecccc---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3456789999999998654 4999887 344558899999999999764333322345667888888888876
Q ss_pred ---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC---CCeee
Q 012138 132 ---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL---PGHLK 205 (470)
Q Consensus 132 ---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 205 (470)
.+++++++||++|++.+++.+.. +|+ .|++..++|++........+... .. .+.. .+...
T Consensus 87 ~~~~~~v~~~~g~~~a~~~~~~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~~-~~---~~~~~~~~~~~~ 152 (391)
T 4dq6_A 87 KIKSEWLIYSPGVIPAISLLINELTK---------AND-KIMIQEPVYSPFNSVVKNNNREL-II---SPLQKLENGNYI 152 (391)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHHSC---------TTC-EEEECSSCCTHHHHHHHHTTCEE-EE---CCCEECTTSCEE
T ss_pred CCcHHHeEEcCChHHHHHHHHHHhCC---------CCC-EEEEcCCCCHHHHHHHHHcCCeE-Ee---eeeeecCCCceE
Confidence 46899999999999999998754 354 78889999988665544333211 11 1111 11122
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC--
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE-- 282 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~-- 282 (470)
+ |+++|++++++ +++|+++.++||+|.++ +.+.+++|.++|++||++||+||+|+++.+.|... .+...
T Consensus 153 ~---d~~~l~~~l~~----~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 224 (391)
T 4dq6_A 153 M---DYEDIENKIKD----VKLFILCNPHNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISK 224 (391)
T ss_dssp C---CHHHHHHHCTT----EEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred e---eHHHHHHHhhc----CCEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCc
Confidence 3 89999998864 77777666699999999 88889999999999999999999999987776532 12211
Q ss_pred ---CCCcceeecccccc-CCCcceeEEEecH-HHHhhcCcCC-ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHH
Q 012138 283 ---EVRPDMVILGKALG-GGVIPVSAVLADK-EVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLG 354 (470)
Q Consensus 283 ---~~~pdi~s~sK~l~-gG~~~ig~v~~~~-~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~ 354 (470)
+....+.|+||.++ +|+ |+|++++++ ++++.+.... ...+++.++++++++.++++..++ +...++++++.
T Consensus 225 ~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 303 (391)
T 4dq6_A 225 EFEKNTITCMAPTKTFNIAGL-QSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNI 303 (391)
T ss_dssp HHHHTEEEEECSHHHHTCGGG-CCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccCcEEEEEechhhccCccc-ceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 11234568999998 888 999999875 8888776542 334567899999999888876332 44556666666
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCC
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSIS 426 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t 426 (470)
+++.+.|++. +| .+....+.+.++. +.+.... .+..++++.|.++ ||.+.++ ..+++|++++ ++
T Consensus 304 ~~l~~~l~~~---~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~ 375 (391)
T 4dq6_A 304 DFAIKYINEN---MP-KLKVRKPEGTYLLWVDFSALG--LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CP 375 (391)
T ss_dssp HHHHHHHHHH---CT-TSEECCCSBSSEEEEECGGGC--CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SC
T ss_pred HHHHHHHHhh---CC-CCEecCCCccEEEEEEhhhcC--CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CC
Confidence 7776666552 22 3555566777666 5554311 2678899999999 9999764 2589999965 79
Q ss_pred HHHHHHHHHHHHHHHh
Q 012138 427 SNELQEGSKALHDVLE 442 (470)
Q Consensus 427 ~e~i~~~~~~l~~~l~ 442 (470)
++++++++++|.++++
T Consensus 376 ~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 376 RSMLEEALIRIKNAIN 391 (391)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998874
No 51
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=7.3e-35 Score=290.68 Aligned_cols=353 Identities=14% Similarity=0.124 Sum_probs=235.0
Q ss_pred eEEEeecCCEEEeCCCC-----eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCC-cHHHHHHHHhhhhC-
Q 012138 59 IVFSQAKGSSIWDPEGN-----KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND-KFPVFAERLTSMFG- 131 (470)
Q Consensus 59 ~~~~~~~g~~~~d~~G~-----~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~- 131 (470)
++-++++|+++||.+|+ .+|||..+.. +++ .+|++.+++.++++.....+.....+ +++++++++.+.+|
T Consensus 7 ~~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~ 83 (390)
T 1d2f_A 7 VVDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYT 83 (390)
T ss_dssp -----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCC
T ss_pred cccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCC
Confidence 34578999999999997 7899987754 355 78999999999986522111111344 56666766665544
Q ss_pred ---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC--eeee
Q 012138 132 ---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--HLKV 206 (470)
Q Consensus 132 ---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 206 (470)
.++|++++||++|++.+++++.. +|+ .|++..++||+........+.. ... .+..++ .+.
T Consensus 84 ~~~~~~v~~t~g~~~al~~~~~~l~~---------~gd-~vl~~~p~y~~~~~~~~~~g~~-~~~---v~~~~~~~~~~- 148 (390)
T 1d2f_A 84 AIDSQTVVYGPSVIYMVSELIRQWSE---------TGE-GVVIHTPAYDAFYKAIEGNQRT-VMP---VALEKQADGWF- 148 (390)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHSSC---------TTC-EEEEEESCCHHHHHHHHHTTCE-EEE---EECEECSSSEE-
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHhcC---------CCC-EEEEcCCCcHHHHHHHHHCCCE-EEE---eecccCCCccc-
Confidence 46799999999999999997643 454 8888999999876554333221 110 011000 011
Q ss_pred cCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCc
Q 012138 207 DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 286 (470)
Q Consensus 207 ~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~p 286 (470)
.|+++|++++++. ++++|++..++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|..+. ....+.+
T Consensus 149 --~d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~ 222 (390)
T 1d2f_A 149 --CDMGKLEAVLAKP--ECKIMLLCSPQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVAR 222 (390)
T ss_dssp --CCHHHHHHHHTST--TEEEEEEESSCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCC
T ss_pred --cCHHHHHHHhccC--CCeEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcch
Confidence 2899999999753 678887555599999998 889999999999999999999999998877765321 1112222
Q ss_pred ---c-eeecccccc-CCCcceeEEEec-HHHHhhcCcCCc-cCCC-CCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHH
Q 012138 287 ---D-MVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEH-GSTF-GGNPLASAVAIASLDVIRD--EKLAERSAHLGEE 356 (470)
Q Consensus 287 ---d-i~s~sK~l~-gG~~~ig~v~~~-~~~~~~~~~~~~-~~t~-~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~ 356 (470)
| +.++||.++ +|+ |+|+++++ +++++.+..... ..++ +.++++++++.++++..++ +...+++++++++
T Consensus 223 ~~~d~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 301 (390)
T 1d2f_A 223 GDWALLTSGSKSFNIPAL-TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTY 301 (390)
T ss_dssp SSEEEEECSHHHHTCGGG-CCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhHhhccCccHhhcccCh-hheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3 889999998 898 99999985 788887765444 4565 6899999998888875322 3455566667777
Q ss_pred HHHHHHHHHhhCCCceEEEeccceeE-EEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHH
Q 012138 357 LRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSN 428 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e 428 (470)
+.+.|++. +| .+...++.|.++ ++.+.... .+..++.+.|. ++||.+.++. .+++|++++. +++
T Consensus 302 l~~~L~~~---~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~ 373 (390)
T 1d2f_A 302 IADKMNAA---FP-ELNWQIPQSTYLAWLDLRPLN--IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRS 373 (390)
T ss_dssp HHHHHHHH---CS-SCCCCCCSBCSEEEEECGGGC--CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHH
T ss_pred HHHHHHhh---CC-CCEEecCCccEEEEEEccccC--CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHH
Confidence 77766652 22 233345666555 45554321 25678999999 5799998752 5799999664 689
Q ss_pred HHHHHHHHHHHHHhccc
Q 012138 429 ELQEGSKALHDVLELDL 445 (470)
Q Consensus 429 ~i~~~~~~l~~~l~~~~ 445 (470)
++++++++|.++++ ++
T Consensus 374 ~l~~~l~~l~~~l~-~~ 389 (390)
T 1d2f_A 374 KLEKGVAGLINAIR-AV 389 (390)
T ss_dssp HHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHH-hh
Confidence 99999999999987 64
No 52
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=6e-35 Score=292.10 Aligned_cols=356 Identities=14% Similarity=0.130 Sum_probs=249.3
Q ss_pred eEEEeecCCEEEeCCCC-------eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC
Q 012138 59 IVFSQAKGSSIWDPEGN-------KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG 131 (470)
Q Consensus 59 ~~~~~~~g~~~~d~~G~-------~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 131 (470)
++.++++|+++||.+|+ .++||.++.. +++ .+|.+.+++.++++.....+.....++++.+++++.+.+|
T Consensus 8 ~~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g 84 (399)
T 1c7n_A 8 KISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQ 84 (399)
T ss_dssp CCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHC
T ss_pred cccccCCCccccccchhhccccCCCceeeeecCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhC
Confidence 34568999999998873 7899988753 244 7899999999998753221111123344555555554445
Q ss_pred ----CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-C-Ceee
Q 012138 132 ----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-P-GHLK 205 (470)
Q Consensus 132 ----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 205 (470)
.++|++|+||++|++.+++++.. +|+ .|++..++||+........+. ... +.+.. . +.+.
T Consensus 85 ~~~~~~~v~~t~g~~~a~~~~~~~l~~---------~gd-~vl~~~p~~~~~~~~~~~~g~-~~~---~~~~~~~~g~~~ 150 (399)
T 1c7n_A 85 WDIQTDWIINTAGVVPAVFNAVREFTK---------PGD-GVIIITPVYYPFFMAIKNQER-KII---ECELLEKDGYYT 150 (399)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHHCC---------TTC-EEEECSSCCTHHHHHHHTTTC-EEE---ECCCEEETTEEE
T ss_pred CCCChhhEEEcCCHHHHHHHHHHHhcC---------CCC-EEEEcCCCcHhHHHHHHHcCC-EEE---ecccccCCCCEE
Confidence 46799999999999999997743 454 788899999987655443322 111 11111 0 0112
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC--
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE-- 282 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~-- 282 (470)
+ |+++|++++++. ++++|++..++||+|.++ +++++++|.++|++||++||+||+|+++.+.|.. ..+..+
T Consensus 151 ~---d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 224 (399)
T 1c7n_A 151 I---DFQKLEKLSKDK--NNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDE 224 (399)
T ss_dssp C---CHHHHHHHHTCT--TEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred E---cHHHHHHHhccC--CCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCc
Confidence 2 899999999742 788888666699999998 8999999999999999999999999988776642 222222
Q ss_pred ---CCCcceeecccccc-CCCcceeEEEec-HHHHhhcCcCCccCCC-CCCHHHHHHHHHHHHHHhh--hhHHHHHHHHH
Q 012138 283 ---EVRPDMVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGSTF-GGNPLASAVAIASLDVIRD--EKLAERSAHLG 354 (470)
Q Consensus 283 ---~~~pdi~s~sK~l~-gG~~~ig~v~~~-~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~ 354 (470)
+....+.++||.++ +|+ |+|+++++ +++++.+.......++ +.++++++++.++|+...+ +...+++++++
T Consensus 225 ~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 303 (399)
T 1c7n_A 225 QLADKTITFTAPSKTFNIAGM-GMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQ 303 (399)
T ss_dssp HHHTTEEEEECSHHHHTCGGG-CCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccCcEEEEEeChhhccccch-heEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 22234569999998 898 99999986 6788887654444444 5789999998888875321 34555566666
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHH-HcCceeccC------CCCEEEEecCCCCC
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMK-ERGILAKPT------HDTIVRLTPPLSIS 426 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~------~~~~iR~~~~~~~t 426 (470)
+++.+.|++. +| .+...++.|.++. +.+.... .+..++++.|+ ++||.+.|+ ..+++||+++. +
T Consensus 304 ~~l~~~L~~~---~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~ 375 (399)
T 1c7n_A 304 RIVKDFFEVN---HP-EIKAPLIEGTYLQWIDFRALK--MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA--P 375 (399)
T ss_dssp HHHHHHHHHH---CT-TSBCCCCSBSSEEEEECGGGC--CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS--C
T ss_pred HHHHHHHHhh---CC-CCeEecCCceEEEEEEcccCC--CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc--C
Confidence 7776666552 22 2444456666664 5554311 25678999997 679999875 25799999664 5
Q ss_pred HHHHHHHHHHHHHHHhcccCC
Q 012138 427 SNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 427 ~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++++++++++|.++++ ++++
T Consensus 376 ~~~l~~~l~~l~~~l~-~~~~ 395 (399)
T 1c7n_A 376 SSVIQESLERLNKALK-DLKN 395 (399)
T ss_dssp HHHHHHHHHHHHHHHH-HHC-
T ss_pred HHHHHHHHHHHHHHHH-HHHh
Confidence 8999999999999998 7753
No 53
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=8.2e-35 Score=291.76 Aligned_cols=357 Identities=15% Similarity=0.119 Sum_probs=244.5
Q ss_pred eEEEeecCCEEEeCCCC---eEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhCC
Q 012138 59 IVFSQAKGSSIWDPEGN---KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFGY 132 (470)
Q Consensus 59 ~~~~~~~g~~~~d~~G~---~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 132 (470)
-++..++|.++++..++ ++|||.+|... +++ .+|+|.+++.++++... +.......++++++++++++++|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~ 97 (407)
T 3nra_A 20 EVRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGA 97 (407)
T ss_dssp -------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 34667777776655444 59999986332 233 78999999999987532 222223456788899999988875
Q ss_pred -----CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCC--CCCCeee
Q 012138 133 -----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP--LLPGHLK 205 (470)
Q Consensus 133 -----~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 205 (470)
+++++|+||++|++.+++.+.. +|+ .|++..++|++........... ....+..+ ...+...
T Consensus 98 ~~~~~~~i~~~~g~~~a~~~~~~~l~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~ 166 (407)
T 3nra_A 98 PVDARDGLIITPGTQGALFLAVAATVA---------RGD-KVAIVQPDYFANRKLVEFFEGE-MVPVQLDYVSADETRAG 166 (407)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHTTCC---------TTC-EEEEEESCCTHHHHHHHHTTCE-EEEEEBCCCSSCCSSCC
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHhCC---------CCC-EEEEcCCcccchHHHHHHcCCE-EEEeecccccccCcCCC
Confidence 6899999999999999987643 344 7888999987655443332221 11000000 0001111
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC--
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE-- 282 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~-- 282 (470)
+ |+++|++++++ ++++|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|..+ .....
T Consensus 167 ~---d~~~l~~~l~~---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~ 239 (407)
T 3nra_A 167 L---DLTGLEEAFKA---GARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAA 239 (407)
T ss_dssp B---CHHHHHHHHHT---TCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTT
T ss_pred c---CHHHHHHHHhh---CCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCc
Confidence 2 89999999986 566766555599999999 89999999999999999999999999887776543 22222
Q ss_pred ---CCCcceeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHH
Q 012138 283 ---EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEE 356 (470)
Q Consensus 283 ---~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~ 356 (470)
+...++.||||.++ +|+ |+|++++++++++.+.......+++.++++++++.++|+...+ ++..++.++++++
T Consensus 240 ~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (407)
T 3nra_A 240 VDAENVVTIMGPSKTESLSGY-RLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDE 318 (407)
T ss_dssp SCGGGEEEEECSSSTTCCGGG-CCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCcccccCCCee-eEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 22344669999998 898 9999999999999887666666777888888887766652111 3345555666666
Q ss_pred HHHHHHHHHhhCCCceEEEeccc-eeEEEEeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCCHH
Q 012138 357 LRQHLFKIQQQFPNYVKEVRGRG-LFNAVEFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSN 428 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e 428 (470)
+.+.|+++ | .+....+.+ .++++.+... +.+..++++.|+++ ||.+.++ ..+++|++++ .+++
T Consensus 319 l~~~L~~~----~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~ 389 (407)
T 3nra_A 319 LLHVLRGC----E-GVFARTPQAGSYLFPRLPKL--AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHE 389 (407)
T ss_dssp HHHHHHTS----T-TCBCCCCSBSSEECCBCCCB--SSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC--SCHH
T ss_pred HHHHHhcC----C-CceeccCCeeEEEEEeCCCC--CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC--CCHH
Confidence 66666543 2 344334554 5555544331 13678899999765 9998864 3689999976 4999
Q ss_pred HHHHHHHHHHHHHhcccC
Q 012138 429 ELQEGSKALHDVLELDLP 446 (470)
Q Consensus 429 ~i~~~~~~l~~~l~~~~~ 446 (470)
+|++++++|.++++ +++
T Consensus 390 ~i~~~~~~l~~~~~-~~~ 406 (407)
T 3nra_A 390 AAVAAARRIVTLVE-RYR 406 (407)
T ss_dssp HHHHHHHHHHHHHH-HHB
T ss_pred HHHHHHHHHHHHHH-Hhh
Confidence 99999999999998 654
No 54
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=4.5e-33 Score=279.22 Aligned_cols=335 Identities=16% Similarity=0.167 Sum_probs=243.0
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-CCcHHHHHHHHhhhh----C----CCeEEecCChhHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMF----G----YDMVLPMNTGAEG 144 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~----~----~~~v~~~~sGteA 144 (470)
|+.+|||.++.+. ..+++++.+.+++.++++....... |. .....++++.+++++ | .+++++|+||++|
T Consensus 33 g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a 110 (407)
T 2zc0_A 33 GVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA 110 (407)
T ss_dssp SCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred CCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence 6788999988654 3477889999999999976431111 21 112344555555444 6 4679999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----CCHHHHHHHHH-
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFK- 219 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~Le~~l~- 219 (470)
++.+++.+.. +|+ .|++..++||+....... .+... ..++. .|+++|+++++
T Consensus 111 ~~~~~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~-~g~~~------------~~v~~~~~~~d~~~l~~~l~~ 167 (407)
T 2zc0_A 111 LDLLGRVLID---------PGD-VVITENPSYINTLLAFEQ-LGAKI------------EGVPVDNDGMRVDLLEEKIKE 167 (407)
T ss_dssp HHHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHT-TTCEE------------EEEEEETTEECHHHHHHHHHH
T ss_pred HHHHHHHhcC---------CCC-EEEEeCCChHHHHHHHHH-cCCEE------------EEcccCCCCCCHHHHHHHHHh
Confidence 9999998753 454 788999999886543322 22111 12221 28999999997
Q ss_pred ---hcCCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC---CCCcceeec
Q 012138 220 ---ESGDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE---EVRPDMVIL 291 (470)
Q Consensus 220 ---~~~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~---~~~pdi~s~ 291 (470)
+ +.++++|+ ++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. ..+..+ +...++.+|
T Consensus 168 ~~~~-~~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 245 (407)
T 2zc0_A 168 LKAK-GQKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTL 245 (407)
T ss_dssp HHHT-TCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEES
T ss_pred hhcc-cCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEccc
Confidence 3 13678875 555799999998 8899999999999999999999999988766643 222222 223456799
Q ss_pred cccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH--h-h--hhHHHHHHHHHHHHHHHHHHHHh
Q 012138 292 GKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI--R-D--EKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 292 sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~-~--~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
||.+++|+ |+|++++++++++.+.......+++.+++.++++.++++.. + + +.+.++++++++++.+.|++..
T Consensus 246 sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~- 323 (407)
T 2zc0_A 246 SKVLGTGF-RIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL- 323 (407)
T ss_dssp TTTTCTTS-CCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccCCCc-ceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 99999998 99999999999988876556667778999999988888753 2 2 4566777778888888877641
Q ss_pred hCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC--------CCCEEEEecCCCCCHHHHHHHHHH
Q 012138 367 QFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT--------HDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 367 ~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
| .+..+ +..|.++++.+... .+..++++.|.++ ||.+.++ ..+++||+++.. +++++++++++
T Consensus 324 --~-~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~ 396 (407)
T 2zc0_A 324 --P-NAEFTKPIAGMFVMFFLPEG---ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKK 396 (407)
T ss_dssp --T-TSCBCCCSBSSEEEEECSTT---CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHH
T ss_pred --C-CCEEecCCCcEEEEEEcCCC---CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHH
Confidence 1 12222 34566777766432 2678899999999 9999875 257999998766 89999999999
Q ss_pred HHHHHhccc
Q 012138 437 LHDVLELDL 445 (470)
Q Consensus 437 l~~~l~~~~ 445 (470)
|.++++ ++
T Consensus 397 l~~~l~-~~ 404 (407)
T 2zc0_A 397 LAKLYK-EK 404 (407)
T ss_dssp HHHHHH-HH
T ss_pred HHHHHH-HH
Confidence 999998 65
No 55
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=3e-34 Score=286.69 Aligned_cols=350 Identities=15% Similarity=0.071 Sum_probs=247.5
Q ss_pred CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC----
Q 012138 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---- 131 (470)
Q Consensus 57 ~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---- 131 (470)
.|+....+.+..++|.+|+++|||.++....+ .+|.+.+++.++++....++. ....++++++++++.+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~---~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~ 88 (396)
T 3jtx_A 12 YPFARLHEAMQGISAPEGMEAVPLHIGEPKHP---TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTV 88 (396)
T ss_dssp CHHHHHHHHTTTCCCCTTCCCEECSCCSCCSC---CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCC
T ss_pred ChHHHHHHHHHhhhhccCCCeEEeCCcCCCCC---CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCC
Confidence 34444456677778899999999999864433 789999999998865433322 2234567778888777655
Q ss_pred -CC-eEEecCChhHHHHHHHHHHHHhchhcccCCCCC----cEEEEEccCccccccchhcccCCcccccCCCCCCCCeee
Q 012138 132 -YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDE----AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK 205 (470)
Q Consensus 132 -~~-~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~----~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (470)
.+ ++++|+||++|++.+++.+.. +|+ +.|++..++|++........+..... . +...+...
T Consensus 89 ~~~~~i~~t~g~~~al~~~~~~~~~---------~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~-v---~~~~~g~~ 155 (396)
T 3jtx_A 89 DADNEILPVLGSREALFSFVQTVLN---------PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHF-A---NCPAPSFN 155 (396)
T ss_dssp CTTTSEEEESSHHHHHHHHHHHHCC---------C---CCCCEEEEEESCCHHHHHHHHHTTCEEEE-E---ECCTTTCC
T ss_pred CCCCeEEEcCCcHHHHHHHHHHHhC---------CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEE-e---ecCCCCCc
Confidence 45 899999999999999998754 442 58999999998776544333322111 0 11011111
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC-Cccccc----
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG-RMLASD---- 280 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G-~~~~~~---- 280 (470)
+ |+++|++++++ ++++|+++.++||+|.++ +.+.+++|.++|++||++||+||+|+++.+.| ......
T Consensus 156 ~---d~~~l~~~~~~---~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 228 (396)
T 3jtx_A 156 P---DWRSISEEVWK---RTKLVFVCSPNNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAA 228 (396)
T ss_dssp C---CGGGSCHHHHH---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHH
T ss_pred c---CHHHHHHhhcc---CcEEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhh
Confidence 2 78899999987 788888656699999999 88889999999999999999999999987776 333221
Q ss_pred ----cCCCCcceeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHH
Q 012138 281 ----WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLG 354 (470)
Q Consensus 281 ----~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~ 354 (470)
..+..+++.||||.++ +|+ |+|++++++++++.+.......+++.++++++++.++|+..+. +..+++++++.
T Consensus 229 ~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 307 (396)
T 3jtx_A 229 QLGRSRQKLLMFTSLSKRSNVPGL-RSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKF 307 (396)
T ss_dssp HTTCCCTTEEEEEESTTTSSCGGG-CCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hcccccCcEEEEeccccccCCccc-ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1344556779999876 788 9999999999999887665666788999999999888863111 23444455555
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccC------------CCCEEEEec
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPT------------HDTIVRLTP 421 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~------------~~~~iR~~~ 421 (470)
+++.+.|.++ .+ +. ....|.++++.+.. .+..++++.|.+ +||.+.|+ ..+++||++
T Consensus 308 ~~l~~~l~~~---~~--~~-~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~ 377 (396)
T 3jtx_A 308 ERVIPILQQV---FD--VK-LPDASFYIWLKVPD----GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIAL 377 (396)
T ss_dssp HHHHHHHTTT---SC--CC-CCSSSSEEEEECTT----SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEEC
T ss_pred HHHHHHHHhc---CC--cc-CCCeeEEEEEECCC----CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEE
Confidence 5555554432 11 11 12335566665543 256788888865 59998764 258999996
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 012138 422 PLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+ .+++++++++++|.++++
T Consensus 378 ~--~~~~~i~~~l~~l~~~l~ 396 (396)
T 3jtx_A 378 V--ADVATCVKAAEDIVSLYR 396 (396)
T ss_dssp C--SCHHHHHHHHHHHHHHCC
T ss_pred c--CCHHHHHHHHHHHHHHhC
Confidence 5 499999999999998763
No 56
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=5.2e-33 Score=280.86 Aligned_cols=337 Identities=13% Similarity=0.149 Sum_probs=238.9
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-----CCCcHHHHHHHHhhhhC----CC-eEEecCChhHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-----YNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGV 145 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~ 145 (470)
.+|||.++.. +++ .+|.+.+++.++++........| ..++++++++++.+.+| .+ ++++++||++|+
T Consensus 38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 4789988864 345 78999999999987521111111 22345555555555444 46 899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-----eeeecC-CCHHHHHHHHH
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-----HLKVDF-GDITALEKIFK 219 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~d~~~Le~~l~ 219 (470)
+.+++++.. +|+ .|++..++||+........+. ..... +..++ .....+ .|+++|+++++
T Consensus 115 ~~~~~~~~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~-~~~~~---~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 180 (429)
T 1yiz_A 115 YATIQGHVD---------EGD-EVIIIEPFFDCYEPMVKAAGG-IPRFI---PLKPNKTGGTISSADWVLDNNELEALFN 180 (429)
T ss_dssp HHHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTC-EEEEE---ECBCCCSSSSEEGGGCBCCHHHHHHHCC
T ss_pred HHHHHHhcC---------CCC-EEEEcCCCchhHHHHHHHcCC-EEEEE---eCCcccccccccccCcccCHHHHHHHhc
Confidence 999998743 454 788899999986654332221 11111 11110 000011 28999999886
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccc----cCCCCcceeecccc
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASD----WEEVRPDMVILGKA 294 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~----~~~~~pdi~s~sK~ 294 (470)
+ ++++|++++++||+|.++ +++++++|.++|++||++||+||+|++|.+.|.. ..+. ..+..+++.++||.
T Consensus 181 ~---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~ 256 (429)
T 1yiz_A 181 E---KTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKT 256 (429)
T ss_dssp T---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHH
T ss_pred c---CceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhc
Confidence 4 789888777899999998 8999999999999999999999999998776642 1121 23445567799999
Q ss_pred cc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH-----H--hh--hhHHHHHHHHHHHHHHHHHHH
Q 012138 295 LG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-----I--RD--EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 295 l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----~--~~--~~~~~~~~~~~~~l~~~L~~l 364 (470)
++ +|+ |+|++++++++++.+.......+++.++++++++.++|+. . ++ ++++++++++++++.+.|+++
T Consensus 257 ~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 335 (429)
T 1yiz_A 257 FSLTGW-KIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 335 (429)
T ss_dssp HTCGGG-CCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCc-ceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98 898 9999999999998887655667888999999999999987 3 21 345566667777777777765
Q ss_pred HhhCCCceEEEec-cceeEEEEeccCCC---------chhHHHHHHHHH-HcCceeccCC-----------CCEEEEecC
Q 012138 365 QQQFPNYVKEVRG-RGLFNAVEFDKTAL---------PVSAYDICLKMK-ERGILAKPTH-----------DTIVRLTPP 422 (470)
Q Consensus 365 ~~~~p~~~~~~~~-~g~~~~~~~~~~~~---------~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~iR~~~~ 422 (470)
+ +....+ .|.++++.+..... ..+..+++++|. ++||.+.|+. .+++||+++
T Consensus 336 g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~ 409 (429)
T 1yiz_A 336 G------MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF 409 (429)
T ss_dssp T------CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC
T ss_pred C------CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec
Confidence 1 233334 46677776653200 025678888886 6899998752 579999976
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 012138 423 LSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 423 ~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++++|++++++|+++++
T Consensus 410 --~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 410 --KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp --SCHHHHHHHHHHHHHHSC
T ss_pred --CCHHHHHHHHHHHHHhcc
Confidence 599999999999999876
No 57
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=3.9e-33 Score=274.35 Aligned_cols=329 Identities=15% Similarity=0.123 Sum_probs=245.6
Q ss_pred ecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCCh
Q 012138 64 AKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTG 141 (470)
Q Consensus 64 ~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sG 141 (470)
.+|.++++.+|+.+|||.++... ++ .+|++.+++.++++.... |......+++++++++++ .+++++++||
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~i~~~~g~ 77 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNENP--LG-MSPKAQAAARDAVVKANR----YAKNEILMLGNKLAAHHQVEAPSILLTAGS 77 (354)
T ss_dssp ----CCCCCCSSSCEECSSCCCS--SC-CCHHHHHHHHHTGGGTTS----CCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred cccccccCCCCCceEEccCCCCC--CC-CCHHHHHHHHHHHhhCcC----CCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence 45677888999999999998643 33 889999999998875322 333456789999999987 4689999999
Q ss_pred hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHH
Q 012138 142 AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEK 216 (470)
Q Consensus 142 teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~ 216 (470)
++|++.+++.+.. +|+ .|++..++|++........+.. +..++++ |+++|++
T Consensus 78 ~~a~~~~~~~l~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~d~~~l~~ 134 (354)
T 3ly1_A 78 SEGIRAAIEAYAS---------LEA-QLVIPELTYGDGEHFAKIAGMK-------------VTKVKMLDNWAFDIEGLKA 134 (354)
T ss_dssp HHHHHHHHHHHCC---------TTC-EEEEESSSCTHHHHHHHHTTCE-------------EEEECCCTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhC---------CCC-eEEECCCCchHHHHHHHHcCCE-------------EEEecCCCCCCCCHHHHHH
Confidence 9999999997743 454 7888999988765443332221 1233333 8999999
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc----cccC-CCCcceeec
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA----SDWE-EVRPDMVIL 291 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~----~~~~-~~~pdi~s~ 291 (470)
+++++ +++++|+++.++||+|.++ +.+.+++|.++| +||+++|+||+|+++.+.+.... .+.. +....+.++
T Consensus 135 ~l~~~-~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 211 (354)
T 3ly1_A 135 AVAAY-SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTF 211 (354)
T ss_dssp HHHTC-SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEES
T ss_pred HhccC-CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeC
Confidence 99841 2788888777799999999 777788888888 79999999999998876664321 1222 333455699
Q ss_pred ccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 292 GKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 292 sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
||.++ +|+ |+|++++++++++.+..... .++.++++++++.++|+.... +..+++++++.+++.+.|++++
T Consensus 212 sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---- 284 (354)
T 3ly1_A 212 SKIHAMAGM-RVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDLK---- 284 (354)
T ss_dssp SSTTCCGGG-CCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred hhhccChhh-hheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC----
Confidence 99998 898 99999999999998875433 378899999999888874322 4566777778888888887762
Q ss_pred CceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec---cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 370 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK---PTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~---~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+...++.|.++++.+.. +..++.+.|.++||.+. .+..+++|+++. +++++++++++|+++++
T Consensus 285 --~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 285 --LPYLPSEGNFVFHQLVV-----PLKDYQTHMADAGVLIGRAFPPADNWCRISLG---TPQEMQWVADTMREFRK 350 (354)
T ss_dssp --CCBCCCCSSEEEEECSS-----CHHHHHHHHHHTTEECCCCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred --CeECCCCceEEEEECCC-----CHHHHHHHHHHCCEEEeecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 22335678887776543 56789999999999987 123689999943 89999999999999987
No 58
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=1e-32 Score=280.07 Aligned_cols=338 Identities=16% Similarity=0.201 Sum_probs=240.8
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-----ccCCCCCCCcHHHHHHHHhhhhCC---CeEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-----LSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~ 145 (470)
+..+|||.+|.+.. .+++++++.+++.++++... +.......++++.+++++.+..|. ++|++|+||++|+
T Consensus 75 ~~~~i~l~~g~p~~-~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNP-KTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCG-GGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCc-hhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 34689999887543 35678999999999887632 111111223344444444333364 7899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----CCHHHHHHHHHh-
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKE- 220 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~Le~~l~~- 220 (470)
+.+++++.. +|+ .|++..++|++........+. . +..++. .|+++|+++++.
T Consensus 154 ~~~~~~l~~---------~Gd-~Vlv~~p~y~~~~~~~~~~g~-~------------~~~v~~~~~g~d~~~L~~~l~~~ 210 (448)
T 3aow_A 154 DLIGRVFLN---------PGD-IVVVEAPTYLAALQAFNFYEP-Q------------YIQIPLDDEGMKVEILEEKLKEL 210 (448)
T ss_dssp HHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHTTCC-E------------EEEEEEETTEECHHHHHHHHHHH
T ss_pred HHHHHHHcC---------CCC-EEEEeCCChHHHHHHHHHcCC-E------------EEEeccCCCCCCHHHHHHHHhhh
Confidence 999998754 454 888899999886654433221 1 112222 289999999971
Q ss_pred --cCCCeEEEEEc-cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----cccccCCCCcceeeccc
Q 012138 221 --SGDQIAGFLFE-PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDWEEVRPDMVILGK 293 (470)
Q Consensus 221 --~~~~~~~vi~e-pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~~~~~pdi~s~sK 293 (470)
.+.++++|++. .++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. ..++..+..+++.+|||
T Consensus 211 ~~~~~~~k~v~~~~~~~NPtG~~~-~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK 289 (448)
T 3aow_A 211 KSQGKKVKVVYTVPTFQNPAGVTM-NEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSK 289 (448)
T ss_dssp HHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTT
T ss_pred hccCCCCeEEEECCCCCCCcCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchh
Confidence 11368887644 4699999998 8999999999999999999999999988766642 23333344457779999
Q ss_pred cccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH--hh--hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI--RD--EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 294 ~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~~--~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
.+++|+ |+||+++++++++.+.......+++.++++++++.++|+.. .+ +.+++.++++++++.+.|++. +|
T Consensus 290 ~~~~Gl-riG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~ 365 (448)
T 3aow_A 290 ILAPGF-RIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MP 365 (448)
T ss_dssp TTCGGG-CCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC
T ss_pred hccccc-cEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CC
Confidence 999998 99999999999998876555556778999999988888742 11 334555556666676666653 22
Q ss_pred CceEEEecc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 370 NYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 370 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
..+....+. |.|+++.+... .+..+++++|.++||.+.|+ ..+++|++++. .++++|++++++|.++
T Consensus 366 ~g~~~~~p~~g~~~~v~~~~~---~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~ 441 (448)
T 3aow_A 366 EGVKWTKPEGGMFIWVTLPDG---IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAET 441 (448)
T ss_dssp TTCEECCCSBSSEEEEECSTT---CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHH
T ss_pred CCeEEeCCCccEEEEEEcCCC---CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHH
Confidence 124443444 56666666432 26778999999999999864 35799999775 4899999999999999
Q ss_pred Hhccc
Q 012138 441 LELDL 445 (470)
Q Consensus 441 l~~~~ 445 (470)
++ +.
T Consensus 442 l~-~~ 445 (448)
T 3aow_A 442 IK-EE 445 (448)
T ss_dssp HH-HH
T ss_pred HH-HH
Confidence 97 54
No 59
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=2e-36 Score=302.25 Aligned_cols=353 Identities=12% Similarity=0.118 Sum_probs=249.3
Q ss_pred ceEEEeecCCEEEeCCCC--eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC----
Q 012138 58 PIVFSQAKGSSIWDPEGN--KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG---- 131 (470)
Q Consensus 58 p~~~~~~~g~~~~d~~G~--~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---- 131 (470)
.++.++++|+++||.+|+ .++||..+... ++ .+|++.+++.++++.....+.....++++++++++.+.++
T Consensus 12 ~~~~~~~~g~~~~d~~g~~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~ 88 (392)
T 3b1d_A 12 TAPNRLSHHTYKWKETETDPQLLPAWIADMD--FE-VMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFD 88 (392)
Confidence 355678999999999999 99999887542 33 6899999999988653222111144566677777766554
Q ss_pred CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC--eeeecCC
Q 012138 132 YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--HLKVDFG 209 (470)
Q Consensus 132 ~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 209 (470)
.++|++++||++|++.+++++.. +|+ .|++..++||+........+.... ..+..+. ...+
T Consensus 89 ~~~v~~~~g~~~a~~~~~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~~~----~~~~~~~~g~~~~--- 151 (392)
T 3b1d_A 89 KEDIVFVEGVVPAISIAIQAFTK---------EGE-AVLINSPVYPPFARSVRLNNRKLV----SNSLKEENGLFQI--- 151 (392)
Confidence 46899999999999999998754 344 788899999887655433322111 0111000 0112
Q ss_pred CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----ccccc--CC
Q 012138 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDW--EE 283 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~--~~ 283 (470)
|+++|++++++. ++++|+++.++||+|.++ +.+++++|+++|++||++||+||+|++|.+.|.. +.+.. .+
T Consensus 152 d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 228 (392)
T 3b1d_A 152 DFEQLENDIVEN--DVKLYLLCNPHNPGGRVW-EREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKD 228 (392)
Confidence 788899888732 677777666799999998 8889999999999999999999999998776632 22222 34
Q ss_pred CCcceeecccccc-CCCcceeEEEecH-HHHhhcCcCCccCCC-CCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q 012138 284 VRPDMVILGKALG-GGVIPVSAVLADK-EVMLCIQPGEHGSTF-GGNPLASAVAIASLDVIRD--EKLAERSAHLGEELR 358 (470)
Q Consensus 284 ~~pdi~s~sK~l~-gG~~~ig~v~~~~-~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~ 358 (470)
..+++.||||+++ +|+ |+|++++++ ++++.+.......++ +.++++++++.++|+..++ ++++++++++.+++.
T Consensus 229 ~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~ 307 (392)
T 3b1d_A 229 FALVLSSATKTFNIAGT-KNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAV 307 (392)
Confidence 4566789999998 898 999999865 588888765555544 4688888888888874222 334555556666666
Q ss_pred HHHHHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHH-HcCceeccC------CCCEEEEecCCCCCHHHH
Q 012138 359 QHLFKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMK-ERGILAKPT------HDTIVRLTPPLSISSNEL 430 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~------~~~~iR~~~~~~~t~e~i 430 (470)
+.|++. +| .+...++.|.++. +.+.... .+..++++.|+ ++||++.|+ .++++||+ +..+++++
T Consensus 308 ~~l~~~---~~-~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~e~i 379 (392)
T 3b1d_A 308 EYFAQE---AP-RLKVMKPQGTYLIWLDFSDYG--LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--IAAPKSLV 379 (392)
Confidence 665541 22 3445567777776 4443211 25667889997 779999875 25789999 45578999
Q ss_pred HHHHHHHHHHHh
Q 012138 431 QEGSKALHDVLE 442 (470)
Q Consensus 431 ~~~~~~l~~~l~ 442 (470)
++++++|.++++
T Consensus 380 ~~~l~~l~~~l~ 391 (392)
T 3b1d_A 380 EEICKRIVCCLP 391 (392)
Confidence 999999998875
No 60
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=7.3e-32 Score=266.66 Aligned_cols=321 Identities=14% Similarity=0.083 Sum_probs=242.0
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALK 150 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~ 150 (470)
.+.+|||.++... ...+|++.+++.++++.... ..|......+++++++++++. +++++|+||++|++.+++
T Consensus 29 ~~~~i~l~~~~~~---~~~~~~v~~a~~~~~~~~~~--~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 29 SHGLVKLDAMENP---YRLPPALRSELAARLGEVAL--NRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp CTTCEECCSSCCC---CCCCHHHHHHHHHHHHHHHT--TCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CCCeeEccCCCCC---CCCCHHHHHHHHHHhhhhhh--hcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 3578999988632 33789999999999875321 123344578999999999887 789999999999999998
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCe
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQI 225 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~ 225 (470)
.+.. +|+ .|++..++|++........+.. +..++. .|+++|+++++++ ++
T Consensus 104 ~~~~---------~gd-~Vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~l~~~--~~ 158 (367)
T 3euc_A 104 AAAR---------PGA-KVMAPVPGFVMYAMSAQFAGLE-------------FVGVPLRADFTLDRGAMLAAMAEH--QP 158 (367)
T ss_dssp HTCC---------TTC-EEEEEESCSCCSCHHHHTTTCE-------------EEEEECCTTSCCCHHHHHHHHHHH--CC
T ss_pred HHcC---------CCC-EEEEcCCCHHHHHHHHHHcCCe-------------EEEecCCCCCCCCHHHHHHHhhcc--CC
Confidence 7743 454 7888999998876554333221 112221 2899999999874 57
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhc--CcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCccee
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVS 303 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~--gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig 303 (470)
++|+++.++||+|.++ +.+.+++|.++|++| |+++|+||+|++|+..+.....+..+..+++.+|||...+|+ |+|
T Consensus 159 ~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G 236 (367)
T 3euc_A 159 AIVYLAYPNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGI-RLG 236 (367)
T ss_dssp SEEEEESSCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSC-CEE
T ss_pred CEEEEcCCCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhccccc-Cce
Confidence 7888767799999999 888899999999999 999999999998865444333444454556779999955788 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~ 382 (470)
++++++++++.+.... .+++.++++++++.++|+..+. +...++.+++++++.+.|++ +| .+...++.|.++
T Consensus 237 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~-g~~~~~~~~~~~ 309 (367)
T 3euc_A 237 YVAGDPQWLEQLDKVR--PPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA----HG-GVTVFPSAANFL 309 (367)
T ss_dssp EEEECHHHHHHHGGGC--CSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT----ST-TCEECCCSSSEE
T ss_pred eeeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----CC-CcEECCCCCeEE
Confidence 9999999998887533 4677899999999988875221 34555666666666666654 33 355556677777
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.+. +..++.+.|.++||.+.++. .+++|+++. +++++++++++|+++++
T Consensus 310 ~~~~~------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 310 LARVP------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp EEECS------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred EEECC------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 77654 36788999999999998764 589999943 99999999999999876
No 61
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-33 Score=281.45 Aligned_cols=337 Identities=13% Similarity=0.153 Sum_probs=240.2
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc--cccC-CCCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL--TLSS-RAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGV 145 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~-~~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~ 145 (470)
.|+.+|||..|.+. ++ .+|.+.+++.++++.. ..++ .....++++++++++.+.+|. ++|++|+||++|+
T Consensus 55 ~~~~~i~l~~g~~~--~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFFS--YS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSCS--SC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCCC--CC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 45678999988653 33 7899999999998752 1111 112234566666776665553 5799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC--------CCCeeeecCCCHHHHHHH
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL--------LPGHLKVDFGDITALEKI 217 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~~Le~~ 217 (470)
+.+++.+.. +|+ .|++..++||+........+... ...+..+. ......+ |+++|+++
T Consensus 132 ~~~~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~~~-~~v~~~~~~~~~~~~~~~~~~~~---d~~~l~~~ 197 (447)
T 3b46_A 132 LSCLMGLLN---------AGD-EVIVFEPFFDQYIPNIELCGGKV-VYVPINPPKELDQRNTRGEEWTI---DFEQFEKA 197 (447)
T ss_dssp HHHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTCEE-EEEEEECCGGGGTSCBCSTTSEE---CHHHHHTT
T ss_pred HHHHHHHcC---------CCC-EEEEeCCCchhHHHHHHHcCCEE-EEEeCCCccccccccccccCccc---CHHHHHHh
Confidence 999998754 455 78889999987655433322211 11000000 0001122 89999988
Q ss_pred HHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccc-----cCCCCcceeecc
Q 012138 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD-----WEEVRPDMVILG 292 (470)
Q Consensus 218 l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~-----~~~~~pdi~s~s 292 (470)
+++ ++++|++++++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|....+. .++..+.+.++|
T Consensus 198 l~~---~~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~s 273 (447)
T 3b46_A 198 ITS---KTKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAG 273 (447)
T ss_dssp CCT---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHH
T ss_pred hcc---CCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCc
Confidence 864 789888777799999999 89999999999999999999999999887766322221 235556677999
Q ss_pred cccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 012138 293 KALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 293 K~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
|.++ +|+ |+||+++ ++++++.+.......+++.+++.++++.++|+.... +.++++++++++++.+.|++++
T Consensus 274 K~~~~~G~-riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 351 (447)
T 3b46_A 274 KSFAATGW-RIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELG- 351 (447)
T ss_dssp HHTTCTTS-CCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hhcCCcch-hhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 9998 898 9999999 999998887655566788899999999888887532 3466777788888888887762
Q ss_pred hCCCceEEEec-cceeEEEEeccCCC------------chhHHHHHHHHH-HcCceeccCC-----------CCEEEEec
Q 012138 367 QFPNYVKEVRG-RGLFNAVEFDKTAL------------PVSAYDICLKMK-ERGILAKPTH-----------DTIVRLTP 421 (470)
Q Consensus 367 ~~p~~~~~~~~-~g~~~~~~~~~~~~------------~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~iR~~~ 421 (470)
+....+ .|.++++.+..... ..+..+++++|. ++||.+.|+. .+++||++
T Consensus 352 -----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~ 426 (447)
T 3b46_A 352 -----LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAV 426 (447)
T ss_dssp -----CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEEC
T ss_pred -----CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEE
Confidence 222334 45566666543100 125678998887 5799998762 68999996
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 012138 422 PLSISSNELQEGSKALHD 439 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~ 439 (470)
+ .++++|++++++|.+
T Consensus 427 ~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 427 C--KDDAYLENAVERLKL 442 (447)
T ss_dssp C--SCHHHHHHHHHHGGG
T ss_pred e--CCHHHHHHHHHHHHH
Confidence 5 589999999999977
No 62
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=1e-32 Score=275.28 Aligned_cols=333 Identities=11% Similarity=0.113 Sum_probs=233.3
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
+|+++|||.++....+ .+|++.+++.++++.....+ .....++++.+++++.+.++ .++|++|+||++|++
T Consensus 29 ~g~~~i~l~~g~~~~~---~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~ 105 (391)
T 3h14_A 29 AGRRIIHMEVGQPGTG---APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFL 105 (391)
T ss_dssp TTCCCEECCCSSCSSC---SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred cCCCeEEccCCCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHH
Confidence 6788999999875433 58999999999886532211 11133445556666655443 468999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-------CHHHHHHHHH
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-------DITALEKIFK 219 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~Le~~l~ 219 (470)
.+++.+.. +|+ .|++..++|++........+.. +..++++ |+++|+++
T Consensus 106 ~~~~~l~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~-- 160 (391)
T 3h14_A 106 LAFTALFD---------SGD-RVGIGAPGYPSYRQILRALGLV-------------PVDLPTAPENRLQPVPADFAGL-- 160 (391)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCHHHHHHHHHTTCE-------------EEEEECCGGGTTSCCHHHHTTS--
T ss_pred HHHHHhcC---------CCC-EEEEcCCCCccHHHHHHHcCCE-------------EEEeecCcccCCCCCHHHHHhc--
Confidence 99998754 455 7888999998765443332221 1222221 77777655
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC-CCCcceeecccccc-C
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE-EVRPDMVILGKALG-G 297 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~-~~~pdi~s~sK~l~-g 297 (470)
++++|+++.++||+|.++ +.+++++|.++|++||+++|+||+|++|.+.|.......+ +....+.++||.++ +
T Consensus 161 ----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 235 (391)
T 3h14_A 161 ----DLAGLMVASPANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMT 235 (391)
T ss_dssp ----CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCT
T ss_pred ----CCeEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCc
Confidence 456777666699999999 8889999999999999999999999998777654322222 22233448999998 8
Q ss_pred CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 298 GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
|+ |+|++++++++++.+.......+++.++++++++.++++..+. +..+++++++.+++.+.|+++. .....+
T Consensus 236 G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~ 309 (391)
T 3h14_A 236 GW-RVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAG-----FTRIAP 309 (391)
T ss_dssp TS-CCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCBCC
T ss_pred cc-eeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcC-----CCcccC
Confidence 98 9999999999998887666677888999999998888762111 4456666777777777776652 222234
Q ss_pred ccc-eeEEEEeccCCCchhHHHHHHHHHHc-CceeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 377 GRG-LFNAVEFDKTALPVSAYDICLKMKER-GILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 377 ~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
+.| .++++.+.... .+..++++.|+++ ||.+.|+ ..+++|++++. +++++++++++|.++++ +...
T Consensus 310 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~-~~~~ 384 (391)
T 3h14_A 310 PDGAFYVYADVSDLT--DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQ-ARGE 384 (391)
T ss_dssp CCBTTEEEEECTTTC--SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHH-HC--
T ss_pred CCeeEEEEEecCccC--CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHH-Hhcc
Confidence 555 44555554311 3678899998876 9999864 25799999654 89999999999999998 7654
Q ss_pred CC
Q 012138 448 MR 449 (470)
Q Consensus 448 ~~ 449 (470)
.+
T Consensus 385 ~~ 386 (391)
T 3h14_A 385 GH 386 (391)
T ss_dssp --
T ss_pred cc
Confidence 43
No 63
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=7.1e-33 Score=279.60 Aligned_cols=345 Identities=17% Similarity=0.167 Sum_probs=242.9
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-----ccCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-----LSSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAE 143 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGte 143 (470)
++.+|||.++.+. ..++++|++.+++.++++... +.......++++++++++.+.+| .++|++|+||++
T Consensus 42 ~~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPD-PETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCC-GGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCC-cccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 5678999988754 357889999999999987632 11111223345555555544436 357999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc--
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES-- 221 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~-- 221 (470)
|++.+++++.. +|+ .|++..++|++........+.. .... +..++ .+ |+++|++++++.
T Consensus 121 al~~~~~~l~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~~-~~~v---~~~~~--~~---d~~~l~~~l~~~~~ 181 (425)
T 1vp4_A 121 ALDLIGKLFLD---------DES-YCVLDDPAYLGAINAFRQYLAN-FVVV---PLEDD--GM---DLNVLERKLSEFDK 181 (425)
T ss_dssp HHHHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHTTTCE-EEEE---EEETT--EE---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---------CCC-EEEEeCCCcHHHHHHHHHcCCE-EEEe---ccCCC--CC---CHHHHHHHHHhhhh
Confidence 99999997743 454 8888999998866544332221 1100 10011 12 899999999751
Q ss_pred ---CCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-ccc---ccCCCCcceeeccc
Q 012138 222 ---GDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LAS---DWEEVRPDMVILGK 293 (470)
Q Consensus 222 ---~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~---~~~~~~pdi~s~sK 293 (470)
+.++++|+ +..++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. ..+ +..+....+.+|||
T Consensus 182 ~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK 260 (425)
T 1vp4_A 182 NGKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK 260 (425)
T ss_dssp TTCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTT
T ss_pred cccCCCceEEEECCCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEecccc
Confidence 12688874 555699999999 8999999999999999999999999988776643 222 21222233569999
Q ss_pred cccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH--hh--hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI--RD--EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 294 ~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~~--~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
.+++|+ |+|++++++++++.+.......+++.++++++++.++|+.. .+ +.++++++++++++.+.|+++...+|
T Consensus 261 ~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 339 (425)
T 1vp4_A 261 VLAPGL-RIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIP 339 (425)
T ss_dssp TTCGGG-CEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred cccccc-ceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999998 99999999999988875555556778999999999888764 22 44566677777888887776421110
Q ss_pred CceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 370 NYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 370 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.+..+ +..|.++++.+... .+..++++.|.++||.+.|+ ..+++||+++.. +++++++++++|.++
T Consensus 340 -g~~~~~~~~g~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~ 414 (425)
T 1vp4_A 340 -GVKWVKSEGGLFIWLTLPEG---FDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREV 414 (425)
T ss_dssp -TCEECCCSBSSEEEEECCTT---CCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred -ceEEecCCccEEEEEEcCCC---CCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHH
Confidence 23333 34466777766532 24567899999999998764 257999998764 899999999999999
Q ss_pred HhcccC
Q 012138 441 LELDLP 446 (470)
Q Consensus 441 l~~~~~ 446 (470)
++ ++.
T Consensus 415 l~-~~~ 419 (425)
T 1vp4_A 415 VL-EYG 419 (425)
T ss_dssp HH-HHH
T ss_pred HH-HHH
Confidence 98 654
No 64
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=4.7e-33 Score=281.76 Aligned_cols=355 Identities=11% Similarity=0.066 Sum_probs=251.9
Q ss_pred hhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-ccCC--CCCCCcHHHHH
Q 012138 47 YEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSR--AFYNDKFPVFA 123 (470)
Q Consensus 47 ~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~~~l~ 123 (470)
+++....+.+.++.........+++.+|+.+|||.++... ++ .+|++.+++.++++... ..+. ....++++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la 92 (437)
T 3g0t_A 16 NELHIKDLGMASIRDLVALVTNLEKATGTKFCRMEMGVPG--LP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEAS 92 (437)
T ss_dssp HHHTCSCGGGCCHHHHHHHHHHHHHHHTCCCEECCCCSCC--SC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHH
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHHHhcCCCEEeccCcCCC--CC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHH
Confidence 3444444444444333344455667788999999998754 33 78999999999987522 1111 11223344455
Q ss_pred HHHhhhhC----CCeEEecCChhHHHHHHHHHHH--HhchhcccCCCCCc-EEEEEccCccccccchhcccCCcccccCC
Q 012138 124 ERLTSMFG----YDMVLPMNTGAEGVETALKLAR--KWGYVKKKFSIDEA-IIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 124 ~~l~~~~~----~~~v~~~~sGteA~~~al~~~~--~~~~~~~~~~~g~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
+++.+.++ .+++++|+||++|++.+++.+. . +|+. .|++..++|++........+...
T Consensus 93 ~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~---------~gd~~~Vl~~~p~~~~~~~~~~~~g~~~------ 157 (437)
T 3g0t_A 93 RFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTH---------KNREYGTLFIDPGFNLNKLQCRILGQKF------ 157 (437)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSC---------TTCSCCEEEEESCCHHHHHHHHHHTCCC------
T ss_pred HHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCC---------CCCccEEEEeCCCcHhHHHHHHHcCCEE------
Confidence 55544332 5689999999999999999875 3 3542 67778999987655444333221
Q ss_pred CCCCCCeeeecCC------CHHHHHHHHHhcCCCeEEEEE-ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 197 GPLLPGHLKVDFG------DITALEKIFKESGDQIAGFLF-EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 197 ~~~~~~~~~~~~~------d~~~Le~~l~~~~~~~~~vi~-epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
..++.+ |+++|++++++. ++++|++ +| +||+|.++ +.+.+++|.++|++||++||+||+|++
T Consensus 158 -------~~v~~~~~~~~~d~~~l~~~l~~~--~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~ 226 (437)
T 3g0t_A 158 -------ESFDLFEYRGEKLREKLESYLQTG--QFCSIIYSNP-NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFG 226 (437)
T ss_dssp -------EEEEGGGGCTTHHHHHHHHHHTTT--CCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred -------EEEeecCCCCccCHHHHHHHHhcC--CceEEEEeCC-CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhh
Confidence 222221 789999999432 6777764 55 99999999 888999999999999999999999997
Q ss_pred CcccCCc---------ccccc-CCCCcceeecccccc-CCCcceeEEEecHHHHh-h-----------------cCcCCc
Q 012138 270 LARSGRM---------LASDW-EEVRPDMVILGKALG-GGVIPVSAVLADKEVML-C-----------------IQPGEH 320 (470)
Q Consensus 270 ~g~~G~~---------~~~~~-~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~-~-----------------~~~~~~ 320 (470)
+.+.+.. ..+.. .+....+.++||.++ +|+ |+|++++++++++ . +.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (437)
T 3g0t_A 227 MDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQ-RIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALY 305 (437)
T ss_dssp CCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGG-CCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHH
T ss_pred cccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccc-eeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHh
Confidence 6554322 11211 233334569999999 898 9999999999998 7 665555
Q ss_pred cCCCCCCHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-------e-ccceeEEEEec
Q 012138 321 GSTFGGNPLASAVAIASLDVIR-----DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-------R-GRGLFNAVEFD 387 (470)
Q Consensus 321 ~~t~~~~~~~~aaa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-------~-~~g~~~~~~~~ 387 (470)
..+++.++++++++.++|+... .+.++++++++++++.+.|++++ +... + ..|.++++.+.
T Consensus 306 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~~~~~~~~~ 379 (437)
T 3g0t_A 306 ALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNG------FNIVYDKDGNEPLADGFYFTVGYK 379 (437)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTT------EEESSCEETTEECCSSSEEEEEET
T ss_pred hhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcC------CEEeccccCCCCCceeEEEEEecC
Confidence 5677889999999999998765 34577777888888888877651 3322 4 45666777665
Q ss_pred cCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 388 KTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. .+..++.+.|.++||.+.++. .+++|++++. .+++++++++++|.++++
T Consensus 380 -~---~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 380 -G---MDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSL-LPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp -T---CCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSS-SCGGGHHHHHHHHHHHHH
T ss_pred -C---CCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 2 267889999999999998764 2789999884 499999999999999876
No 65
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=5.3e-33 Score=275.83 Aligned_cols=329 Identities=16% Similarity=0.178 Sum_probs=232.7
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCC-CcHHHHHHHHhhhh----CC----C-eEEecCChh
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN-DKFPVFAERLTSMF----GY----D-MVLPMNTGA 142 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~----~~----~-~v~~~~sGt 142 (470)
+|+.+|||.++.. +++ .+|.+.+++.++++.... ..|.. ....++++.+++++ |. + +|++++||+
T Consensus 23 ~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~ 97 (376)
T 2dou_A 23 RGVGLIDLSIGST--DLP-PPEAPLKALAEALNDPTT--YGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQ 97 (376)
T ss_dssp TTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCGGG--SSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHH
T ss_pred cCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCCCc--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence 4788999998865 355 589999999998864211 11222 12345555555544 64 3 899999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
+|++.+++.+.. +|+ .|++..++||+........+.. .... +. .+... .|+++|+++++.
T Consensus 98 ~a~~~~~~~l~~---------~gd-~vl~~~p~y~~~~~~~~~~g~~-~~~~---~~-~~~~~---~d~~~l~~~l~~-- 157 (376)
T 2dou_A 98 EGLAHLLLALTE---------PED-LLLLPEVAYPSYFGAARVASLR-TFLI---PL-REDGL---ADLKAVPEGVWR-- 157 (376)
T ss_dssp HHHHHHHHHHCC---------TTC-EEEEESSCCHHHHHHHHHTTCE-EEEE---CB-CTTSS---BCGGGSCHHHHH--
T ss_pred HHHHHHHHHhcC---------CCC-EEEECCCCcHhHHHHHHHcCCE-EEEe---eC-CCCCC---CCHHHHHHhhcc--
Confidence 999999987743 454 7888999998876554433221 1111 11 11111 278899988875
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-ccc---CCCCcceeecccccc-C
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDW---EEVRPDMVILGKALG-G 297 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~---~~~~pdi~s~sK~l~-g 297 (470)
++++|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.... .+. .+....+.++||.++ +
T Consensus 158 -~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 235 (376)
T 2dou_A 158 -EAKVLLLNYPNNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLA 235 (376)
T ss_dssp -HEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCG
T ss_pred -CceEEEECCCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCCh
Confidence 688888766699999998 899999999999999999999999998876654321 222 233345669999998 8
Q ss_pred CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 298 GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
|+ |+|++++++++++.+.......+++.++++++++.++|+..++ +...++++++++++.+.|+++ +...
T Consensus 236 G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~ 307 (376)
T 2dou_A 236 GF-RLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV-------LSLL 307 (376)
T ss_dssp GG-CCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT-------SEEC
T ss_pred hh-eeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh-------cCcc
Confidence 98 9999999999998887655556677899999988888864221 334555566666666666542 2223
Q ss_pred ecc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 376 RGR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 376 ~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.+. |.++++.+... .+..++.+.|.++||.+.++. .+++|++++ .+++++++++++|++++
T Consensus 308 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 308 PPRATMYLWGRLPEG---VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALV--RPLEELLEAAKRIREAL 375 (376)
T ss_dssp CCCBSSEEEEECCTT---CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred CCCeeEEEEEECCCC---CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 344 45566666432 256789999999999998752 589999965 48999999999998865
No 66
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=1e-32 Score=274.88 Aligned_cols=338 Identities=16% Similarity=0.143 Sum_probs=238.6
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
+|+.++||.++... ++ .+|.+.+++.++++.....+. ....++++++++++.+.++ .+++++|+||++|++
T Consensus 28 ~g~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGEPD--FN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 57889999988643 44 689999999998865321111 1123345556666655444 467999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.+++.+.. +|+ .|++..++|++........ +..... .+..++ ...+ |+++|++++++ ++
T Consensus 105 ~~~~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~-g~~~~~---v~~~~~~~~~~---d~~~l~~~l~~---~~ 164 (388)
T 1j32_A 105 NLMLAMIE---------PGD-EVIIPAPFWVSYPEMVKLA-EGTPVI---LPTTVETQFKV---SPEQIRQAITP---KT 164 (388)
T ss_dssp HHHHHHCC---------TTC-EEEEESSCCTHHHHHHHHT-TCEEEE---ECCCGGGTTCC---CHHHHHHHCCT---TE
T ss_pred HHHHHhcC---------CCC-EEEEcCCCChhHHHHHHHc-CCEEEE---ecCCcccCCCC---CHHHHHHhcCc---Cc
Confidence 99998743 454 8888999998765433222 211110 111000 0111 79999998875 78
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----ccccc--CCCCcceeecccccc-CC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDW--EEVRPDMVILGKALG-GG 298 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~--~~~~pdi~s~sK~l~-gG 298 (470)
++|++++++||+|.++ +++++++|.++|++||+++|+||+|+++.+.|.. ..+.. .+..+++.++||.++ +|
T Consensus 165 ~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G 243 (388)
T 1j32_A 165 KLLVFNTPSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG 243 (388)
T ss_dssp EEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT
T ss_pred eEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcc
Confidence 8888777799999998 8899999999999999999999999988766532 11211 334456779999998 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+ |+|++++++++++.+.......+++.++++++++.++|+..++ +++.++++++++++.+.|+++ | .+....
T Consensus 244 ~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~ 317 (388)
T 1j32_A 244 W-RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM----P-GLECPK 317 (388)
T ss_dssp T-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC----T-TCBCCC
T ss_pred c-ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC----C-CCcccC
Confidence 8 9999999999988887655667788899999888888864322 346667777777777777653 2 233334
Q ss_pred ccceeEEE-EeccCCCchhHHHHHHHHHH-cCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 377 GRGLFNAV-EFDKTALPVSAYDICLKMKE-RGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 377 ~~g~~~~~-~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+.++.| .+... +.+..++++.|.+ +||.+.++. ++++|++++ ++++++++++++|.++++ ++
T Consensus 318 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~-~~ 387 (388)
T 1j32_A 318 PDGAFYMFPSIAKT--GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLH-GI 387 (388)
T ss_dssp CCBTTEECCBCGGG--TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHH-HH
T ss_pred CCeeEEEEEecCCC--CCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHH-Hh
Confidence 45444443 33320 1257789999986 699998753 689999965 799999999999999987 54
No 67
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.3e-32 Score=276.61 Aligned_cols=337 Identities=10% Similarity=0.127 Sum_probs=236.1
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChhH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAE 143 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGte 143 (470)
.+|+++|||.++.. +++ .+|.+.+++.++++... +.......++++.+++++.+.+|. +++++|+||++
T Consensus 34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 46788999998864 345 78999999998876531 111111223344444444443363 58999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-------CHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-------DITALEK 216 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~Le~ 216 (470)
|++.+++.+.. +|+ .|++..++||+........+.. +..++.+ |+++|++
T Consensus 111 a~~~~~~~~~~---------~gd-~Vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~ 167 (412)
T 2x5d_A 111 GLAHLMLATLD---------HGD-TILVPNPSYPIHIYGAVIAGAQ-------------VRSVPLVPGIDFFNELERAIR 167 (412)
T ss_dssp HHHHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHHHTCE-------------EEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCC---------CCC-EEEEcCCCchhHHHHHHHcCCE-------------EEEeecCCccCCCCCHHHHHH
Confidence 99999997743 454 7888999998876544332221 1122221 5677877
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-ccccc----CCCCcceeec
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDW----EEVRPDMVIL 291 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~----~~~~pdi~s~ 291 (470)
+++. ++++|++..++||+|.++ +.+++++|.++|++||++||+||+|+++.++|.. ..... .+....+.++
T Consensus 168 ~i~~---~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~ 243 (412)
T 2x5d_A 168 ESIP---KPRMMILGFPSNPTAQCV-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTL 243 (412)
T ss_dssp TEES---CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEEC
T ss_pred hccc---CceEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecC
Confidence 7753 667777644599999998 8899999999999999999999999988766532 12211 2333446699
Q ss_pred ccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 292 GKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 292 sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
||.++ +|+ |+|++++++++++.+.......+++.++++++++.++|+..++ +.+.++++++++++.+.|++++
T Consensus 244 sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--- 319 (412)
T 2x5d_A 244 SKSYNMAGW-RIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAG--- 319 (412)
T ss_dssp C-CCSCTTS-CCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred ccccCCccc-ceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 99998 898 9999999999998887655556788999999999888875332 4567778888888888888762
Q ss_pred CCceEEEecc-ceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 369 PNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 369 p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+....+. |.++++.++......+..++++.|.+ +||.+.++. .+++||+++. +++++++++++|.++
T Consensus 320 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 320 ---WMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAM 394 (412)
T ss_dssp ---CCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred ---CEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 1223445 44566655321000146789999875 599998752 5799999765 899999999999999
Q ss_pred HhcccCCC
Q 012138 441 LELDLPKM 448 (470)
Q Consensus 441 l~~~~~~~ 448 (470)
++ ++..+
T Consensus 395 l~-~~~~~ 401 (412)
T 2x5d_A 395 FR-ADGLL 401 (412)
T ss_dssp HH-HTTCC
T ss_pred HH-hcCCc
Confidence 99 76543
No 68
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=9e-33 Score=276.95 Aligned_cols=337 Identities=11% Similarity=0.077 Sum_probs=238.3
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc---cccCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChhH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL---TLSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAE 143 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGte 143 (470)
..|+++|||.++... ++ .+|.+.+++.++++.. .+.......++++.+++++.+.+|. ++|++++||++
T Consensus 44 ~~g~~~idl~~g~~~--~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 44 HGPLPLINMAVGIPD--GP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CCSSCCEECCCCSCS--SC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred cCCCCEEecCCcCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 357889999988653 45 6899999999887432 1111112223444555555444464 57999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
|++.+++.+.. +|+ .|++..++||+........+.. .... +..++... .|+++|+++++.
T Consensus 121 al~~~~~~l~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~~-~~~v---~~~~~~~~---~d~~~l~~~l~~--- 180 (404)
T 2o1b_A 121 GLVAVPTCVIN---------PGD-YVLLPDPGYTDYLAGVLLADGK-PVPL---NLEPPHYL---PDWSKVDSQIID--- 180 (404)
T ss_dssp HHHHHHHHHCC---------TTC-EEEEEESCCSSHHHHHHHTTCE-EEEE---ECCTTTCC---CCGGGSCHHHHH---
T ss_pred HHHHHHHHhcC---------CCC-EEEEcCCCchhHHHHHHHCCCE-EEEe---ccCcccCc---CCHHHHHHhhcc---
Confidence 99999997743 454 7888999999876554333221 1111 11110111 278899988875
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC----CCCcceeecccccc-CC
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE----EVRPDMVILGKALG-GG 298 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~----~~~pdi~s~sK~l~-gG 298 (470)
++++|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|........ +....+.++||.++ +|
T Consensus 181 ~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 259 (404)
T 2o1b_A 181 KTKLIYLTYPNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSG 259 (404)
T ss_dssp HEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG
T ss_pred CceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCch
Confidence 788888766699999998 8999999999999999999999999988766532211111 22334669999998 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+ |+|++++++++++.+.......+++.++++++++.++|+..++ ++++++++++++++.+.|++++ +....
T Consensus 260 ~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~ 332 (404)
T 2o1b_A 260 F-RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKAD------LPFVH 332 (404)
T ss_dssp G-CCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT------CCEEC
T ss_pred h-heEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC------CeecC
Confidence 8 9999999999998887655556778899999999888876322 4456667777777777777641 33344
Q ss_pred ccce-eEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 377 GRGL-FNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 377 ~~g~-~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+. ++++.+... .+..+++++|. ++||.+.++. .+++||+++. +++++++++++|.++++ +.
T Consensus 333 ~~~g~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~-~~ 403 (404)
T 2o1b_A 333 AKGGIYVWLETPPG---YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAY-LY 403 (404)
T ss_dssp CCBSSEEEEECCTT---CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGG-GG
T ss_pred CCcceEEEEeCCCC---CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHH-hh
Confidence 5544 466666432 25678899987 5699998752 5799999764 78899999999999887 54
No 69
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=8.2e-32 Score=265.52 Aligned_cols=336 Identities=13% Similarity=0.110 Sum_probs=230.8
Q ss_pred ceEEEeecCCEEEe-CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCe
Q 012138 58 PIVFSQAKGSSIWD-PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDM 134 (470)
Q Consensus 58 p~~~~~~~g~~~~d-~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~ 134 (470)
++++.+|.+.+.++ .+|+++|||.++... ++ .+|++.+++.++++....+ ..+...+++++++++++ .++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~~--~~-~~~~v~~a~~~~~~~~~~y----~~~~~~~l~~~la~~~~~~~~~ 80 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNINP--LG-IPKSFLNNIDEGIKNLGVY----PDVNYRRLNKSIENYLKLKDIG 80 (361)
T ss_dssp --------------------CEETTCCCCT--TC-SCHHHHTTHHHHHHGGGSC----CCTTCHHHHHHHHHHHTCCSCE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCCCC--CC-CCHHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHhCCCcce
Confidence 45566666655554 489999999998644 33 6899999999998874332 33445889999999886 468
Q ss_pred EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHH
Q 012138 135 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL 214 (470)
Q Consensus 135 v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L 214 (470)
+++|+||++|++.+++.+ +.|++..++|++........+..... .+..++ ..+ ++++|
T Consensus 81 i~~~~g~t~al~~~~~~~--------------d~vi~~~~~~~~~~~~~~~~g~~~~~----~~~~~~-~~~---~~~~l 138 (361)
T 3ftb_A 81 IVLGNGASEIIELSISLF--------------EKILIIVPSYAEYEINAKKHGVSVVF----SYLDEN-MCI---DYEDI 138 (361)
T ss_dssp EEEESSHHHHHHHHHTTC--------------SEEEEEESCCTHHHHHHHHTTCEEEE----EECCTT-SCC---CHHHH
T ss_pred EEEcCCHHHHHHHHHHHc--------------CcEEEecCChHHHHHHHHHcCCeEEE----eecCcc-cCC---CHHHH
Confidence 999999999999998754 27888999998765544433221111 010000 011 67889
Q ss_pred HHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcc---eeec
Q 012138 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD---MVIL 291 (470)
Q Consensus 215 e~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pd---i~s~ 291 (470)
++++++ +++|+++.++||+|.++ +.+++++|.++|++||+++|+||+|+++.+.+........+..++ +.++
T Consensus 139 ~~~l~~----~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 213 (361)
T 3ftb_A 139 ISKIDD----VDSVIIGNPNNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAM 213 (361)
T ss_dssp HHHTTT----CSEEEEETTBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEES
T ss_pred HHhccC----CCEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeC
Confidence 988864 55666554599999999 888999999999999999999999998766421222222222223 3489
Q ss_pred ccccc-CCCcceeEEE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 292 GKALG-GGVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 292 sK~l~-gG~~~ig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
||.++ +|+ |+|+++ +++++++.+... ..+++.++++++++.++|+..+. ++.+++.+++.+++.+.|++ +
T Consensus 214 sK~~~~~G~-r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~ 286 (361)
T 3ftb_A 214 TKFFAMPGI-RFGYGITNNKEIAAKIKAK--QNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNK----I 286 (361)
T ss_dssp SSTTSCGGG-CCEEEEESCHHHHHHHHTT--SCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH----S
T ss_pred hhhcCCCCc-ceeEEEeCCHHHHHHHHhh--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----C
Confidence 99998 888 999998 899999888753 34678899999999888763211 33455555666666666554 4
Q ss_pred CCceE-EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 369 PNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 369 p~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
| .+. ..++.|.++++.+.. . +..++++.|.++||.+.++. .+++|++++ ++++++++++.|+++.
T Consensus 287 ~-~~~~~~~~~~~~~~~~~~~-~---~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 287 G-FIKRVFSPHANFVLCRLEN-I---SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVE 358 (361)
T ss_dssp S-SEEEEECCSSSEEEEEESS-S---CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred C-CCceecCCCCeEEEEEcCC-C---CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 3 465 677889888887754 2 57889999999999998753 689999954 8889999999998877
Q ss_pred h
Q 012138 442 E 442 (470)
Q Consensus 442 ~ 442 (470)
+
T Consensus 359 ~ 359 (361)
T 3ftb_A 359 N 359 (361)
T ss_dssp H
T ss_pred h
Confidence 6
No 70
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=1.3e-32 Score=272.96 Aligned_cols=323 Identities=12% Similarity=0.035 Sum_probs=232.6
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVET 147 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~~~ 147 (470)
+| .+|||.++... ++ .+|.+.+++.+++.....++. ....++++++++++.+.+|. +++++|+||++|++.
T Consensus 22 ~g-~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~ 97 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQ--FE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN 97 (376)
T ss_dssp SS-CCCBCSSCCCC--SC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred cC-CEEEeCCCCCC--CC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence 56 88999988644 33 689999999988744332222 12345566777777666553 689999999999999
Q ss_pred HHHHHHHhchhcccCCC-CCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhc
Q 012138 148 ALKLARKWGYVKKKFSI-DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKES 221 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~-g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~ 221 (470)
+++.+.. + +++.|++..++|++........+.. +..++.+ ++ +|++++.+
T Consensus 98 ~~~~~~~---------~~~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~-~l~~~~~~- 153 (376)
T 3ezs_A 98 FPSFVLF---------DYQNPTIAYPNPFYQIYEGAAKFIKAK-------------SLLMPLTKENDFTP-SLNEKELQ- 153 (376)
T ss_dssp HHHHHTT---------TCSSCEEEEEESCCTHHHHHHHHTTCE-------------EEEEECCGGGTSCC-CCCHHHHH-
T ss_pred HHHHHcC---------CCCCCEEEEecCCcHhHHHHHHHcCCE-------------EEEcccCCCCCcch-hHHhhhcc-
Confidence 9998754 3 1348889999998765544333221 1222222 22 56666765
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccc---------cCCCCcceeecc
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD---------WEEVRPDMVILG 292 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~---------~~~~~pdi~s~s 292 (470)
++++|+++.++||+|.++ +.+++++|+++|++||++||+||+|+++.+.+...... ..+..+.+.|+|
T Consensus 154 --~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 230 (376)
T 3ezs_A 154 --EVDLVILNSPNNPTGRTL-SLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLS 230 (376)
T ss_dssp --HCSEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEEST
T ss_pred --CCCEEEEcCCCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecch
Confidence 567777655599999999 88899999999999999999999999987777443221 344445677999
Q ss_pred cccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCC
Q 012138 293 KALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPN 370 (470)
Q Consensus 293 K~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~ 370 (470)
|.++ +|+ |+|++++++++++.+.......+++.++++++++.++++..+. +...++++++.+++.+.|+ .
T Consensus 231 K~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~----~--- 302 (376)
T 3ezs_A 231 KRSSAPGL-RSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK----N--- 302 (376)
T ss_dssp TTTTCGGG-CCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST----T---
T ss_pred hccCCccc-eeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc----C---
Confidence 9997 898 9999999999999887666667888999999999888874211 3344444445555544443 1
Q ss_pred ceEEEeccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 371 YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+. .+..|.++++.+. +..++++.|.+ +||.+.|+ ..+++||+++ .+++++++++++|.+++
T Consensus 303 -~~-~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 303 -TL-IYPYSFYVYLPVQ------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYR 372 (376)
T ss_dssp -CC-CCSBSSEEEEECS------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred -CC-CCCcceEEEEECC------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHH
Confidence 22 3456666666554 36788999988 79999763 4689999965 49999999999999999
Q ss_pred hccc
Q 012138 442 ELDL 445 (470)
Q Consensus 442 ~~~~ 445 (470)
+ +.
T Consensus 373 ~-~~ 375 (376)
T 3ezs_A 373 E-NH 375 (376)
T ss_dssp C-C-
T ss_pred H-hc
Confidence 8 54
No 71
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=8.2e-32 Score=271.95 Aligned_cols=344 Identities=13% Similarity=0.139 Sum_probs=242.8
Q ss_pred EeCCCCeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhC-------CCeEEecCC
Q 012138 70 WDPEGNKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFG-------YDMVLPMNT 140 (470)
Q Consensus 70 ~d~~G~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-------~~~v~~~~s 140 (470)
.+.+|+.+|||..|.... +..+.+|.+.+++.++++..... .| ......++++.++++++ .+++++|+|
T Consensus 49 ~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g 126 (427)
T 3dyd_A 49 KPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN--GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSG 126 (427)
T ss_dssp CCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS--SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESS
T ss_pred cccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC--CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecC
Confidence 345678899999886322 12457899999999998864321 12 22335677777777665 468999999
Q ss_pred hhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHH
Q 012138 141 GAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFK 219 (470)
Q Consensus 141 GteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~ 219 (470)
|++|++.+++.+.. +|+ .|++..++|++........+..... .++.+ +...+ |+++|+++++
T Consensus 127 ~t~al~~~~~~l~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~---d~~~l~~~l~ 189 (427)
T 3dyd_A 127 CSQAIDLCLAVLAN---------PGQ-NILVPRPGFSLYKTLAESMGIEVKL----YNLLPEKSWEI---DLKQLEYLID 189 (427)
T ss_dssp HHHHHHHHHHHHCC---------TTC-EEEEEESCCTHHHHHHHHTTCEEEE----EEEEGGGTTEE---CHHHHHSSCC
T ss_pred cHHHHHHHHHHhcC---------CCC-EEEEcCCCchhHHHHHHHcCCEEEE----EecccccCCCC---CHHHHHHHhc
Confidence 99999999998754 454 7888999998765544433321110 00000 01112 7899998886
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCCccee---eccccc
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRPDMV---ILGKAL 295 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~pdi~---s~sK~l 295 (470)
+ ++++|++..++||+|.++ +++++++|.++|++||+++|+||+|++|++.|..+ ....++..++++ ||||.+
T Consensus 190 ~---~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~ 265 (427)
T 3dyd_A 190 E---KTACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRW 265 (427)
T ss_dssp T---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTS
T ss_pred c---CCCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccC
Confidence 5 677777555599999999 89999999999999999999999999998877543 344444455555 999996
Q ss_pred c-CCCcceeEEEec-------HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHH
Q 012138 296 G-GGVIPVSAVLAD-------KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 296 ~-gG~~~ig~v~~~-------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l 364 (470)
+ +|+ |+|+++++ +++++.+.... ..+++.++++++++.++|+.... ++..++++++++++.+.|+++
T Consensus 266 ~~~G~-riG~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 343 (427)
T 3dyd_A 266 LVPGW-RLGWILIHDRRDIFGNEIRDGLVKLS-QRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAI 343 (427)
T ss_dssp SCGGG-CCEEEEEECSTTSSHHHHHHHHHHHH-HHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCc-ceEEEEecCcchhhHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5 788 99999987 46776665432 23678899999999998885322 345566666677777776653
Q ss_pred HhhCCCceEEEecc-ceeEEEEeccCCC--chhHHHHHHHHH-HcCceeccC----CCCEEEEecCCCCCHHHHHHHHHH
Q 012138 365 QQQFPNYVKEVRGR-GLFNAVEFDKTAL--PVSAYDICLKMK-ERGILAKPT----HDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 365 ~~~~p~~~~~~~~~-g~~~~~~~~~~~~--~~~~~~~~~~l~-~~Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
| .+..+.+. |.++++.++.... ..+..+++++|+ ++||++.|+ .++++|+++ .+++++|++++++
T Consensus 344 ----~-g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~ 416 (427)
T 3dyd_A 344 ----P-GLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLEACSR 416 (427)
T ss_dssp ----T-TEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHHHHHH
T ss_pred ----C-CceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHHHHHH
Confidence 3 45555455 4455555642110 125678888886 779999876 368999994 5899999999999
Q ss_pred HHHHHhcccC
Q 012138 437 LHDVLELDLP 446 (470)
Q Consensus 437 l~~~l~~~~~ 446 (470)
|.++++ +++
T Consensus 417 l~~~l~-~~~ 425 (427)
T 3dyd_A 417 IQEFCE-QHY 425 (427)
T ss_dssp HHHHHH-HHC
T ss_pred HHHHHH-Hhh
Confidence 999998 764
No 72
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=3.2e-32 Score=269.57 Aligned_cols=321 Identities=12% Similarity=0.122 Sum_probs=231.8
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
+|+.++||.++.. ++++ +|.+.+++.++++.....+. ....++++.+++++.+.++ .+++++++||++|++
T Consensus 27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 3677899988864 3554 79999999999875321111 1122344555555544332 368999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
.+++++.. +|+ .|++..++||+........+.. +..++ .|+++|++++++ +++
T Consensus 104 ~~~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~-------------~~~v~-~d~~~l~~~l~~---~~~ 156 (370)
T 2z61_A 104 FALSSIID---------DGD-EVLIQNPCYPCYKNFIRFLGAK-------------PVFCD-FTVESLEEALSD---KTK 156 (370)
T ss_dssp HHHHHHCC---------TTC-EEEEESSCCTHHHHHHHHTTCE-------------EEEEC-SSHHHHHHHCCS---SEE
T ss_pred HHHHHhcC---------CCC-EEEEeCCCchhHHHHHHHcCCE-------------EEEeC-CCHHHHHHhccc---Cce
Confidence 99998743 454 8899999998866544332211 23333 489999998875 788
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC----CCCcceeecccccc-CCCcc
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE----EVRPDMVILGKALG-GGVIP 301 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~----~~~pdi~s~sK~l~-gG~~~ 301 (470)
+|+++.++||+|.+++ ++ |.++|++||++||+||+|+++.+.|.......+ +....+.++||.++ +|+ |
T Consensus 157 ~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r 230 (370)
T 2z61_A 157 AIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGW-R 230 (370)
T ss_dssp EEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGG-C
T ss_pred EEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccc-e
Confidence 8887777999999996 55 999999999999999999987766644333222 22223559999998 888 9
Q ss_pred eeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH-Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc
Q 012138 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~ 378 (470)
+|++++++++++.+.......+++.++++++++.++|+. ..+ +++.++++++++++.+.|++++ +....+.
T Consensus 231 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~ 304 (370)
T 2z61_A 231 IGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFG------WEVNNPI 304 (370)
T ss_dssp CEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CBCCCCC
T ss_pred EEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcC------CeecCCC
Confidence 999999999998887655666778899999998888865 222 4566777888888888887752 1222344
Q ss_pred cee-EEEEeccCCCchhHHHHHHHHH-HcCceeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 379 GLF-NAVEFDKTALPVSAYDICLKMK-ERGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 379 g~~-~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.+ +++.+.. +..++.+.|. ++||.+.++ ..+++|++++ ++++++++++++|.++++
T Consensus 305 ~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 305 GAYYVFPNIGE-----DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp BTTEECCBCSS-----CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred cceEEEEecCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 444 4444432 4678999997 679999875 2679999977 799999999999999876
No 73
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=5.4e-32 Score=267.20 Aligned_cols=315 Identities=13% Similarity=0.114 Sum_probs=230.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~ 152 (470)
+.+|||.++... ++ .+|++.+++.++++.... +......+++++++++++. +++++++||++|++.+++.+
T Consensus 32 ~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~ 104 (363)
T 3ffh_A 32 TKITKLSSNENP--LG-TSKKVAAIQANSSVETEI----YPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL 104 (363)
T ss_dssp SCCEECSSCSCT--TC-CCHHHHHHHHTCBSCCCB----C----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEccCCCCC--CC-CCHHHHHHHHHHHHHhhc----CCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH
Confidence 568999988543 33 789999999887654322 2334457889999988874 68999999999999999977
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEE
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAG 227 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~ 227 (470)
.. +|+ .|++..++|++........+.. +..++++ |+++|++++++ ++++
T Consensus 105 ~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~i~~---~~~~ 158 (363)
T 3ffh_A 105 LD---------TTT-NTVMATPTFVQYRQNALIEGAE-------------VREIPLLQDGEHDLEGMLNAIDE---KTTI 158 (363)
T ss_dssp CS---------TTC-EEEEEESSCHHHHHHHHHHTCE-------------EEEEECCTTSCCCHHHHHHHCCT---TEEE
T ss_pred cc---------CCC-EEEEcCCChHHHHHHHHHcCCE-------------EEEecCCCCCCcCHHHHHHhccc---CCCE
Confidence 43 454 7888889988755443332221 1233333 89999999875 7888
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcc----eeecccccc-CCCcce
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD----MVILGKALG-GGVIPV 302 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pd----i~s~sK~l~-gG~~~i 302 (470)
|+++.++||+|.++ +.+++.+|.+.|++ |+++|+||+|++|++ +...........+| +.++||.++ +|+ |+
T Consensus 159 v~~~~p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~ 234 (363)
T 3ffh_A 159 VWICNPNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASA-RV 234 (363)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSC-CC
T ss_pred EEEeCCCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchh-ce
Confidence 88777799999999 66666666666666 999999999998876 54432222211223 558999998 898 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
|++++++++++.+.... .+++.++++++++.++|+..+. ++..++.+++.+++.+.|++. + .+...++.|.+
T Consensus 235 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~-g~~~~~~~~~~ 307 (363)
T 3ffh_A 235 GYGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF----E-KVKLYPANGNF 307 (363)
T ss_dssp EEEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC----T-TCEECCCCSSE
T ss_pred eeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC----C-CceECCCCCeE
Confidence 99999999998887543 3678999999999998863321 345556666666666666552 1 34455677888
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+++.+.. +..++.+.|.++||.+.++. ++++|++++ +++|+++++++|++++
T Consensus 308 ~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 308 VLIDLGI-----EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp EEEECSS-----CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred EEEECCC-----CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 7776643 57789999999999998764 689999954 9999999999998864
No 74
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=2.6e-32 Score=272.89 Aligned_cols=340 Identities=15% Similarity=0.128 Sum_probs=240.5
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-CCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALK 150 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~ 150 (470)
++.+|||.++... +.++++|++.+++.++++........|. .....++++.+++++|. ++|++++||++|++.+++
T Consensus 31 ~~~~i~l~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~ 109 (397)
T 2zyj_A 31 RPGILSFAGGLPA-PELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK 109 (397)
T ss_dssp STTCEEESSCCCC-GGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCceecCCCCCC-chhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence 4568899888654 3577889999999998876321111121 22357788888887764 689999999999999999
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE-
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL- 229 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi- 229 (470)
++.. +|+ .|++..++||+........+. ..... +..++ .+ |+++|++++++. ++++|+
T Consensus 110 ~~~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~-~~~~~---~~~~~--~~---d~~~l~~~l~~~--~~~~v~~ 168 (397)
T 2zyj_A 110 VFLD---------EGS-PVLLEAPSYMGAIQAFRLQGP-RFLTV---PAGEE--GP---DLDALEEVLKRE--RPRFLYL 168 (397)
T ss_dssp HHCC---------TTC-EEEEEESCCHHHHHHHHTTCC-EEEEE---EEETT--EE---CHHHHHHHHHHC--CCSCEEE
T ss_pred HhCC---------CCC-EEEEeCCCcHHHHHHHHHcCC-EEEec---CcCCC--CC---CHHHHHHHHhhc--CCeEEEE
Confidence 7743 454 788899999886654433222 11100 10011 12 899999999863 566764
Q ss_pred EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC------CCCcceeeccccccCCCcce
Q 012138 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE------EVRPDMVILGKALGGGVIPV 302 (470)
Q Consensus 230 ~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~------~~~pdi~s~sK~l~gG~~~i 302 (470)
+..++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. .....+ +....+.++||.+++|+ |+
T Consensus 169 ~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~ 246 (397)
T 2zyj_A 169 IPSFQNPTGGLT-PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL-RV 246 (397)
T ss_dssp CCBSCTTTCCBC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG-CC
T ss_pred CCCCcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccc-ee
Confidence 444699999998 8899999999999999999999999988776653 222222 22234569999999998 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-cc
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GR 378 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~ 378 (470)
|++++++++++.+.......+++.++++++++.++|+... + +.+.++++++.+++.+.|++. +|..+.... ..
T Consensus 247 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~~~~ 323 (397)
T 2zyj_A 247 AFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRYTRPKG 323 (397)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEECCCSB
T ss_pred EEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEccCCc
Confidence 9999999999888655555567778999988888776421 1 334455556666666666553 221233333 45
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
|.++++.+... .+..++++.|.++||.+.++ ..+++||+++.. +++++++++++|.++++ ++
T Consensus 324 g~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~-~~ 393 (397)
T 2zyj_A 324 GMFVWMELPKG---LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALK-GL 393 (397)
T ss_dssp SSEEEEECSTT---CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHH-HH
T ss_pred cEEEEEEcCCC---CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH-HH
Confidence 66677766432 25788999999999999864 357999998764 89999999999999987 64
No 75
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=6.8e-32 Score=269.00 Aligned_cols=335 Identities=13% Similarity=0.120 Sum_probs=235.8
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CCCCCcHHHHHHHHhhhhC----CCe-EEecCChhHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMFG----YDM-VLPMNTGAEGVETA 148 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~-v~~~~sGteA~~~a 148 (470)
.++||.++... ++ .+|++.+++.++++.....+. ....++++.+++++.+.+| .++ +++|+||++|++.+
T Consensus 27 ~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~ 103 (389)
T 1gd9_A 27 DVISLGIGEPD--FD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 103 (389)
T ss_dssp SCEECCCCSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHH
T ss_pred CeEecCCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHH
Confidence 57888887643 44 689999999999876322111 1123344555555554445 467 99999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
++.+.. +|+ .|++..++||+........+. .... .+..++ ...+ |+++|++++++ ++++
T Consensus 104 ~~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~g~-~~~~---v~~~~~~~~~~---d~~~l~~~l~~---~~~~ 163 (389)
T 1gd9_A 104 LSAFLK---------DGE-EVLIPTPAFVSYAPAVILAGG-KPVE---VPTYEEDEFRL---NVDELKKYVTD---KTRA 163 (389)
T ss_dssp HTTTCC---------TTC-EEEEEESCCTTHHHHHHHHTC-EEEE---EECCGGGTTCC---CHHHHHHHCCT---TEEE
T ss_pred HHHhCC---------CCC-EEEEcCCCchhHHHHHHHCCC-EEEE---eccCCccCCCC---CHHHHHHhcCc---CceE
Confidence 987643 344 888999999886544332221 1110 011000 0111 89999998875 6888
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC-ccccccC-CC-Ccc--eeecccccc-CCCcc
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWE-EV-RPD--MVILGKALG-GGVIP 301 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~-~~~~~~~-~~-~pd--i~s~sK~l~-gG~~~ 301 (470)
|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|. ......+ +. ..| +.++||.++ +|+ |
T Consensus 164 v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r 241 (389)
T 1gd9_A 164 LIINSPCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGW-R 241 (389)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGG-C
T ss_pred EEEECCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCccc-c
Confidence 88777799999998 899999999999999999999999998877664 2222222 21 224 458999998 888 9
Q ss_pred eeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
+|++++++++++.+.......+++.++++++++.++|+.... +.+.++++++++++.+.|++++ + ....+
T Consensus 242 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~----~~~~~ 315 (389)
T 1gd9_A 242 LGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMG--L----PTVKP 315 (389)
T ss_dssp CEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--C----CCCCC
T ss_pred eEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcC--C----eecCC
Confidence 999999999998887666666788899999998888875332 4456667777788888777652 1 12234
Q ss_pred c-ceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 378 R-GLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 378 ~-g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
. |.++++.+.... .+..++++.|. ++||.+.++. .+++||+++ .+++++++++++|.++++ +.+
T Consensus 316 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~~~-~~~ 387 (389)
T 1gd9_A 316 KGAFYIFPRIRDTG--LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEEAMDRMERVLK-ERK 387 (389)
T ss_dssp CBTTEECCBCGGGT--CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHH-HTT
T ss_pred CeeeEEEEeccCCC--CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHH-hcc
Confidence 4 444444553211 25778999998 8899998752 679999966 499999999999999998 654
No 76
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=1.3e-31 Score=267.90 Aligned_cols=333 Identities=15% Similarity=0.153 Sum_probs=236.7
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc------ccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT------LSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAE 143 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGte 143 (470)
++.+|||.++. +....+|++.+++.++++... +.......++++++++++.+.+| .++|++|+||++
T Consensus 34 ~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIGN---PSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSCC---CCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecCC---CCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 45789999883 333478999999999987631 11112223556677777766554 468999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
|++.+++.+.. +|++.|++..++|++........+... .. .+..++...+ |+++|++++++
T Consensus 111 al~~~~~~l~~---------~g~d~vl~~~p~~~~~~~~~~~~g~~~-~~---v~~~~~~~~~---d~~~l~~~l~~--- 171 (398)
T 3ele_A 111 SLSICFRALTS---------DAYDEFITIAPYFPEYKVFVNAAGARL-VE---VPADTEHFQI---DFDALEERINA--- 171 (398)
T ss_dssp HHHHHHHHHCC---------STTCEEEEESSCCTHHHHHHHHTTCEE-EE---ECCCTTTSSC---CHHHHHHTCCT---
T ss_pred HHHHHHHHHcC---------CCCCEEEEeCCCchhhHHHHHHcCCEE-EE---EecCCcCCcC---CHHHHHHHhCc---
Confidence 99999998754 462488899999987655443332211 10 1111111122 89999998875
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHh------cCcEEEEeccccCCcccCCcc--ccccCCCCcceeeccccc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK------YNILMIADEIQSGLARSGRML--ASDWEEVRPDMVILGKAL 295 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~------~gillI~Dev~~g~g~~G~~~--~~~~~~~~pdi~s~sK~l 295 (470)
++++|+++.++||+|.++ +.+.+++|+++|++ ||++||+||+|++|.+.|... ..+.++....+.|+||.+
T Consensus 172 ~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 250 (398)
T 3ele_A 172 HTRGVIINSPNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSL 250 (398)
T ss_dssp TEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTS
T ss_pred CCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcC
Confidence 788888766699999999 88889999999999 999999999999987776432 123334444566999999
Q ss_pred c-CCCcceeEEEecHHHHh------hcCcC-CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 296 G-GGVIPVSAVLADKEVML------CIQPG-EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 296 ~-gG~~~ig~v~~~~~~~~------~~~~~-~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
+ +|+ |+|++++++++++ .+... ....+++.++++++++.+.++ .....++++++++++.+.|++++
T Consensus 251 ~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~g-- 324 (398)
T 3ele_A 251 SLPGE-RIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRIG-- 324 (398)
T ss_dssp SCTTT-CCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHHT--
T ss_pred CCccc-eeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHcC--
Confidence 8 898 9999999887433 22211 122356677777777655543 33456788888899999988762
Q ss_pred CCCceEEEecccee-EEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 368 FPNYVKEVRGRGLF-NAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 368 ~p~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+....+.|.+ +++.+.. .+..++++.|.++||.+.++. ++++||++ .+++++|++++++|.++++
T Consensus 325 ----~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~l~~~l~ 394 (398)
T 3ele_A 325 ----YHCFKPDGAFYMFVKALE----DDSNAFCEKAKEEDVLIVAADGFGCPGWVRISY--CVDREMIKHSMPAFEKIYK 394 (398)
T ss_dssp ----CCEECCSBSSEEEEECSS----SCHHHHHHHHHTTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHH
T ss_pred ----CeecCCCeeEEEEEEcCC----CCHHHHHHHHHHCCEEEeCccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence 2334455555 5554432 257789999999999998764 68999996 4799999999999999998
Q ss_pred cccC
Q 012138 443 LDLP 446 (470)
Q Consensus 443 ~~~~ 446 (470)
+++
T Consensus 395 -~~~ 397 (398)
T 3ele_A 395 -KYN 397 (398)
T ss_dssp -HHC
T ss_pred -Hhh
Confidence 764
No 77
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=1.4e-31 Score=269.68 Aligned_cols=339 Identities=14% Similarity=0.155 Sum_probs=235.7
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHcc----ccCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChhHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT----LSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVE 146 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGteA~~ 146 (470)
.+|||..+.... ..+|.+.+++.++++... +.......++++.+++++.+.++. ++|++|+||++|++
T Consensus 29 ~~i~l~~g~~~~---~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~ 105 (422)
T 3fvs_A 29 DVVNLGQGFPDF---PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF 105 (422)
T ss_dssp CCEECCCSSCSS---CCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH
T ss_pred CceEeCCCCCCC---CCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHH
Confidence 578898886432 378999999999987632 111112234566666666665543 57999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC--------CCCeeeecCCCHHHHHHHH
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL--------LPGHLKVDFGDITALEKIF 218 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~~Le~~l 218 (470)
.+++.+.. +|+ .|++..++||+........+... ...+..+. ..+.+.+ |+++|++++
T Consensus 106 ~~~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~G~~~~~~~~~~---d~~~l~~~~ 171 (422)
T 3fvs_A 106 TAFQALVD---------EGD-EVIIIEPFFDCYEPMTMMAGGRP-VFVSLKPGPIQNGELGSSSNWQL---DPMELAGKF 171 (422)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTCEE-EEEECBCCCCCSSSCCBGGGSBC---CHHHHHTTC
T ss_pred HHHHHHcC---------CCC-EEEEcCCCchhhHHHHHHcCCEE-EEEecccccccccccccccCCCC---CHHHHHhhc
Confidence 99997743 454 78889999988654433322211 11111000 0001122 899999888
Q ss_pred HhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC----CCCcceeeccc
Q 012138 219 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE----EVRPDMVILGK 293 (470)
Q Consensus 219 ~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~----~~~pdi~s~sK 293 (470)
++ ++++|+++.++||+|.++ +++++++|.++|++||++||+||+|++|.++|... .+..+ +....+.|+||
T Consensus 172 ~~---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 247 (422)
T 3fvs_A 172 TS---RTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGK 247 (422)
T ss_dssp CT---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHH
T ss_pred CC---CceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchh
Confidence 65 788888777799999999 89999999999999999999999999988777432 22222 22244568999
Q ss_pred ccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH-------Hhh--hhHHHHHHHHHHHHHHHHHH
Q 012138 294 ALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-------IRD--EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 294 ~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-------~~~--~~~~~~~~~~~~~l~~~L~~ 363 (470)
.++ +|+ |+|++++++++++.+.......+++.++++++++.++++. ..+ +++.++++++++++.+.|++
T Consensus 248 ~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 326 (422)
T 3fvs_A 248 TFSATGW-KVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS 326 (422)
T ss_dssp HHTCGGG-CCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCccc-eEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 898 9999999999998887666677888999999999988875 111 34556666677777777665
Q ss_pred HHhhCCCceEEEec-cceeEEEEeccCCC----------chhHHHHHHHHHH-cCceeccC-----------CCCEEEEe
Q 012138 364 IQQQFPNYVKEVRG-RGLFNAVEFDKTAL----------PVSAYDICLKMKE-RGILAKPT-----------HDTIVRLT 420 (470)
Q Consensus 364 l~~~~p~~~~~~~~-~g~~~~~~~~~~~~----------~~~~~~~~~~l~~-~Gv~~~~~-----------~~~~iR~~ 420 (470)
+ .+....+ .|.++++.+..... .....++++.|++ +||.+.|+ +.+++||+
T Consensus 327 ~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis 400 (422)
T 3fvs_A 327 V------GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC 400 (422)
T ss_dssp T------TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE
T ss_pred c------CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEE
Confidence 3 2333344 45555554432100 0005578887665 59998774 25899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 421 PPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 421 ~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+..++++|++++++|+++++ ++
T Consensus 401 --~~~~~e~i~~~l~~l~~~l~-~l 422 (422)
T 3fvs_A 401 --FVKDEATLQAMDEKLRKWKV-EL 422 (422)
T ss_dssp --CCCCHHHHHHHHHHHHHHHH-CC
T ss_pred --ecCCHHHHHHHHHHHHHHHh-hC
Confidence 45599999999999999987 53
No 78
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=9e-32 Score=268.30 Aligned_cols=331 Identities=14% Similarity=0.153 Sum_probs=234.6
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
.|+.++||.++.. +++ .+|.+.+++.++++.....+. ....++++++++++.+.+| .+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 4778899988864 345 479999999998865321111 1122334455555544435 358999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.+++.+.. +|+ .|++..++|++........+. .... .+..+ +...+ |+++|++++++ ++
T Consensus 116 ~~~~~l~~---------~gd-~Vl~~~~~~~~~~~~~~~~g~-~~~~---v~~~~~~~~~~---d~~~l~~~l~~---~~ 175 (389)
T 1o4s_A 116 NAFMALLD---------PGD-EVIVFSPVWVSYIPQIILAGG-TVNV---VETFMSKNFQP---SLEEVEGLLVG---KT 175 (389)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTC-EEEE---EECCGGGTTCC---CHHHHHHTCCT---TE
T ss_pred HHHHHhCC---------CCC-EEEEcCCCchhHHHHHHHcCC-EEEE---EecCCccCCCC---CHHHHHHhccc---Cc
Confidence 99998743 454 788899999876544332221 1110 01000 00111 78999988865 78
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccccc----CCCCcceeecccccc-CCCc
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW----EEVRPDMVILGKALG-GGVI 300 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~----~~~~pdi~s~sK~l~-gG~~ 300 (470)
++|+++.++||+|.++ +++++++|.++|++||++||+||+|+++.+.|....... .+....+.++||.++ +|+
T Consensus 176 ~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~- 253 (389)
T 1o4s_A 176 KAVLINSPNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW- 253 (389)
T ss_dssp EEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG-
T ss_pred eEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCccc-
Confidence 8888777799999998 889999999999999999999999998776654322221 222233558999998 888
Q ss_pred ceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-c
Q 012138 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-G 379 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~-g 379 (470)
|+|++++++++++.+.......+++.++++++++.++|+.. .+++.++++++++++.+.|++++ +. . ..+. |
T Consensus 254 r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~g--~~-~---~~~~~~ 326 (389)
T 1o4s_A 254 RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKMG--VK-F---VEPEGA 326 (389)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHTT--CC-C---CCCSBS
T ss_pred ceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhcC--Ce-e---ecCCcc
Confidence 99999999999888876555567788899888887776532 35677888888889988888752 21 1 2234 4
Q ss_pred eeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 380 LFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++++.+. . +..++.+.|+ ++||.+.++. ++++|++++ .+++++++++++|.++++
T Consensus 327 ~~~~~~~~--~---~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 327 FYLFFKVR--G---DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp SEEEEECS--S---CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred eEEEEeCC--C---CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 44555554 2 5678999997 7899998763 579999976 499999999999999886
No 79
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=8.2e-32 Score=270.11 Aligned_cols=341 Identities=13% Similarity=0.065 Sum_probs=236.0
Q ss_pred CCCCeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHccccC--CCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHH
Q 012138 72 PEGNKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEG 144 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA 144 (470)
.+|+.++||..+.... .++ .+|++.+++.++++.....+ .....++++.+++++.+..+ .+++++|+||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 3578899999886532 344 57999999999887543111 11123345555555554433 3689999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
++.+++.+.. +|+ .|++..++|++........+..... .+..+ +...+ |+++|++++++
T Consensus 114 l~~~~~~l~~---------~gd-~Vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~~~~---d~~~l~~~l~~--- 173 (406)
T 1xi9_A 114 LQLIFGALLD---------PGD-EILVPGPSYPPYTGLVKFYGGKPVE----YRTIEEEDWQP---DIDDIRKKITD--- 173 (406)
T ss_dssp HHHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHHTTCEEEE----EEEEGGGTSEE---CHHHHHHHCCT---
T ss_pred HHHHHHHhCC---------CCC-EEEEcCCCCccHHHHHHHcCCEEEE----eecCCCcCCcC---CHHHHHHhhCc---
Confidence 9999997743 454 8888999998765444322211100 00000 00112 89999999875
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCc-ce--eecccccc-CCC
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP-DM--VILGKALG-GGV 299 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~p-di--~s~sK~l~-gG~ 299 (470)
++++|++++++||+|.++ +++++++|.++|++||++||+||+|+++.+.+....+..++... ++ .++||.++ +|+
T Consensus 174 ~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 252 (406)
T 1xi9_A 174 RTKAIAVINPNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGW 252 (406)
T ss_dssp TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGG
T ss_pred CceEEEEECCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCcc
Confidence 788888777799999998 88999999999999999999999999876644333333332111 33 37899998 788
Q ss_pred cceeEEE--ecH----HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 012138 300 IPVSAVL--ADK----EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNY 371 (470)
Q Consensus 300 ~~ig~v~--~~~----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~ 371 (470)
|+|+++ +++ ++++.+....... ++.++++++++.++|+...+ +++.++++++++++.+.|+++ | .
T Consensus 253 -r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~ 325 (406)
T 1xi9_A 253 -RLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI----P-G 325 (406)
T ss_dssp -CCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS----T-T
T ss_pred -EEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC----C-C
Confidence 999999 898 8888876543333 77888999988888863322 446667777777777777653 2 3
Q ss_pred eEEEeccceeEE-EEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhc
Q 012138 372 VKEVRGRGLFNA-VEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLEL 443 (470)
Q Consensus 372 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 443 (470)
+....+.+.++. +.+.... +.+..++++.|. ++||.+.++. .+++||+++ ++++++++++++|.++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~- 401 (406)
T 1xi9_A 326 ISTTKPQGAFYIFPKIEVGP-WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMK- 401 (406)
T ss_dssp EECCCCCBSSEECCEECSCS-CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHH-
T ss_pred CeeecCCeeEEEEEecCccC-CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH-
Confidence 443445554444 4554310 125778999987 7899988753 679999976 899999999999999998
Q ss_pred cc
Q 012138 444 DL 445 (470)
Q Consensus 444 ~~ 445 (470)
++
T Consensus 402 ~~ 403 (406)
T 1xi9_A 402 ER 403 (406)
T ss_dssp HC
T ss_pred HH
Confidence 65
No 80
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.98 E-value=1.3e-31 Score=271.11 Aligned_cols=342 Identities=15% Similarity=0.113 Sum_probs=230.6
Q ss_pred EeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC---------CCCC-CCcHHHHHHHHhhhhC--------
Q 012138 70 WDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS---------RAFY-NDKFPVFAERLTSMFG-------- 131 (470)
Q Consensus 70 ~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---------~~~~-~~~~~~l~~~l~~~~~-------- 131 (470)
||.+++.+.++..+...+++. ++.+.+++.++.....+.. ..|. .....++++.++++++
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 677776655555555444444 6777777777654332210 0111 1123566666666554
Q ss_pred --CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC
Q 012138 132 --YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 209 (470)
Q Consensus 132 --~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
.+++++++||++|++.+++++.. +|+ .|++..++|++.........+.. +..++++
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l~~---------~gd-~vl~~~p~~~~~~~~~~~~~g~~------------~~~~~~~ 166 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCLAD---------PGE-AVLIPTPYYPGFDRDLKWRTGVE------------IVPIHCT 166 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHHCC---------TTC-EEEEEESCCTTHHHHTTTTTCCE------------EEEEECC
T ss_pred CCHHHEEEcCChHHHHHHHHHHhcC---------CCC-eEEECCCccccHHHHHHHhcCCE------------EEEeeCC
Confidence 57899999999999999998754 454 78889999876554332122221 1222221
Q ss_pred -------CHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-
Q 012138 210 -------DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA- 278 (470)
Q Consensus 210 -------d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~- 278 (470)
|+++|+++++++ +.++++|++++++||+|.++ +.+.+++|+++|++||++||+||+|+++++.|..+.
T Consensus 167 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~ 245 (435)
T 3piu_A 167 SSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFIS 245 (435)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCC
T ss_pred CccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcC
Confidence 899999999762 23788888776699999999 888999999999999999999999998776665431
Q ss_pred cccC----CCC-----cc----eeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-
Q 012138 279 SDWE----EVR-----PD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR- 342 (470)
Q Consensus 279 ~~~~----~~~-----pd----i~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~- 342 (470)
.... +++ +| +.+|||+++ +|+ |+|++++ ++++.+.+.. ....++.++++++++.++++...
T Consensus 246 ~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~ 322 (435)
T 3piu_A 246 VMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKL 322 (435)
T ss_dssp HHHHHHC-------CGGGGEEEEEESSSSSCCGGG-CEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHhccccccccccCCCCCEEEEEeeecccCCCce-eEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHH
Confidence 1111 111 34 568999998 898 9999998 5677776653 33445678888888877776332
Q ss_pred --h--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc-eeEEEEeccCCC---chhHHHHHHHHHHc-CceeccC-
Q 012138 343 --D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG-LFNAVEFDKTAL---PVSAYDICLKMKER-GILAKPT- 412 (470)
Q Consensus 343 --~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g-~~~~~~~~~~~~---~~~~~~~~~~l~~~-Gv~~~~~- 412 (470)
+ ++.+++++++.+++.+.|+++ .+....+.+ .++++.+..... .....+++++|+++ ||.+.|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 396 (435)
T 3piu_A 323 TKNYIAENHKRLKQRQKKLVSGLQKS------GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGS 396 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT------TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------CCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCc
Confidence 1 334455566666666666553 244445555 677776643210 11456888999888 9999864
Q ss_pred -----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 413 -----HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 413 -----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.++++||+++.. +++++++++++|.++++ ++.+
T Consensus 397 ~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~-~~~~ 434 (435)
T 3piu_A 397 SCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVG-EYYN 434 (435)
T ss_dssp GGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHH-HHC-
T ss_pred ccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHH-HHhC
Confidence 368999998655 99999999999999998 7653
No 81
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.98 E-value=1.5e-31 Score=264.19 Aligned_cols=323 Identities=16% Similarity=0.179 Sum_probs=228.3
Q ss_pred EeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHH
Q 012138 70 WDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVET 147 (470)
Q Consensus 70 ~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~ 147 (470)
++.+|++++||.++.. +++ .+|++.+++.++++.... |......++++.++++++. +++++++||++|++.
T Consensus 19 ~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 19 LGISPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCIER----YPDADYFHLHQALARHHQVPASWILAGNGETESIFT 91 (364)
T ss_dssp HTSCGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGGGS----CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHH
T ss_pred cCCCccceEEeccccC--CCC-CCHHHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHH
Confidence 3457888999998863 356 789999999998865322 2223457888889888874 589999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----C-HHHHHHHHHhc
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----D-ITALEKIFKES 221 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~Le~~l~~~ 221 (470)
+++.+ . + +.|++..++||+........+.. +..++.+ + ++++.+.+.
T Consensus 92 ~~~~~-~----------g-d~vl~~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~l~~~~~~~~-- 144 (364)
T 1lc5_A 92 VASGL-K----------P-RRAMIVTPGFAEYGRALAQSGCE-------------IRRWSLREADGWQLTDAILEALT-- 144 (364)
T ss_dssp HHHHH-C----------C-SEEEEEESCCTHHHHHHHHTTCE-------------EEEEECCGGGTTCCCTTHHHHCC--
T ss_pred HHHHc-C----------C-CeEEEeCCCcHHHHHHHHHcCCe-------------EEEEeCCcccccchhHHHHHhcc--
Confidence 99877 3 4 47888999999876554433221 1222221 1 233333332
Q ss_pred CCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-c-cccCCCCcceeecccccc-C
Q 012138 222 GDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-A-SDWEEVRPDMVILGKALG-G 297 (470)
Q Consensus 222 ~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~-~~~~~~~pdi~s~sK~l~-g 297 (470)
.++++|+ ++| +||+|.++ +.+++++|.++|++||++||+||+|+++++.+..+ . .+..+....+.++||.++ +
T Consensus 145 -~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 221 (364)
T 1lc5_A 145 -PDLDCLFLCTP-NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIP 221 (364)
T ss_dssp -TTCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCT
T ss_pred -CCCCEEEEeCC-CCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCC
Confidence 3667666 566 99999998 89999999999999999999999999876544322 1 122333344569999998 8
Q ss_pred CCcceeEEE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 298 GVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 298 G~~~ig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
|+ |+|+++ +++++++.+.... .+++.++++++++.++|+.... +...++++++++++.+.|++ +| .+...
T Consensus 222 G~-r~G~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~~-~~~~~ 293 (364)
T 1lc5_A 222 GL-RLGYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQ----LP-LLTVY 293 (364)
T ss_dssp TT-CCEEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHT----ST-TEEEC
T ss_pred cc-ceEEEEECCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc----CC-CCEEC
Confidence 98 999999 9999988876432 4678899999988887764111 33444555556666665544 33 35555
Q ss_pred eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 376 RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++.|.++++.+.. ...++++.|.++||.+.++. .+++|+++ .++++++++++.|+++++ ++.
T Consensus 294 ~~~g~~~~~~~~~-----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~~-~~~ 361 (364)
T 1lc5_A 294 PGRANYLLLRCER-----EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNVLT-GIA 361 (364)
T ss_dssp CCSSSEEEEEESC-----TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHC-----
T ss_pred CCCCeEEEEECCC-----cHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhh-ccc
Confidence 6778888876643 23468889999999998753 57999993 468999999999999988 764
No 82
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.98 E-value=3.9e-30 Score=254.54 Aligned_cols=321 Identities=12% Similarity=0.053 Sum_probs=230.8
Q ss_pred EeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhh------hC--CCeEEecCChhHHHHHHH
Q 012138 78 LDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSM------FG--YDMVLPMNTGAEGVETAL 149 (470)
Q Consensus 78 lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~--~~~v~~~~sGteA~~~al 149 (470)
|||.++.. +++ .+|++.+++.++++........|......++++.++++ .+ .+++++++|+++|++.++
T Consensus 33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 89988864 344 78999999999987642111122222224566655555 33 367999999999999999
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL 229 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi 229 (470)
+.+.. +|+ .|++..++||+........+.. .... +...+ .. .|+++|+++++++ ++++|+
T Consensus 110 ~~l~~---------~gd-~Vl~~~~~y~~~~~~~~~~g~~-~~~v---~~~~~-~~---~d~~~l~~~i~~~--~~~~v~ 169 (369)
T 3cq5_A 110 QAFGG---------PGR-TALGFQPSYSMHPILAKGTHTE-FIAV---SRGAD-FR---IDMDVALEEIRAK--QPDIVF 169 (369)
T ss_dssp HHHCS---------TTC-EEEEEESSCTHHHHHHHHTTCE-EEEE---ECCTT-SS---CCHHHHHHHHHHH--CCSEEE
T ss_pred HHhcC---------CCC-EEEEcCCChHHHHHHHHHcCCE-EEEe---cCCcC-CC---CCHHHHHHHhhcc--CCCEEE
Confidence 87743 454 8888999998765544333221 1100 00000 11 1799999999763 567888
Q ss_pred EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc-ccCC-CCcceeecccccc-CCCcceeEEE
Q 012138 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS-DWEE-VRPDMVILGKALG-GGVIPVSAVL 306 (470)
Q Consensus 230 ~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~-~~~~-~~pdi~s~sK~l~-gG~~~ig~v~ 306 (470)
+++++||+|.++| ++++.++|+.+++++|+||+|+++++....+.. +.++ ..+.+.++||.++ +|+ |+|+++
T Consensus 170 ~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~ 244 (369)
T 3cq5_A 170 VTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGG-RLGYFV 244 (369)
T ss_dssp EESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGG-CCEEEE
T ss_pred EeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCccc-ceEEEE
Confidence 8778999999996 777788888888999999999987654222222 3334 3456779999998 898 999999
Q ss_pred ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEE
Q 012138 307 ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~ 385 (470)
+++++++.+... ..+|+.++++++++.++|+..+. +..+++++++++++.+.|++. .+...++.|.++++.
T Consensus 245 ~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~~~~~~~~~~ 316 (369)
T 3cq5_A 245 ANPAFIDAVMLV--RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL------GYAVVPSESNFVFFG 316 (369)
T ss_dssp ECTHHHHHHHTT--SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH------TCEEECCSSSEEEEE
T ss_pred eCHHHHHHHHHc--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC------CCEECCCCCeEEEEE
Confidence 999998888643 34567899999999888875322 456777788888888888764 233446778888776
Q ss_pred eccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 386 FDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+. . +..++.+.|.++||.+.+++ ++++|++++ +++++++++++|+++++
T Consensus 317 ~~--~---~~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 317 DF--S---DQHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp CC--S---SHHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred CC--C---CHHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 64 2 56789999999999998863 689999965 89999999999999886
No 83
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.98 E-value=2.4e-31 Score=267.11 Aligned_cols=334 Identities=15% Similarity=0.158 Sum_probs=233.3
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHc-cccC-CCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKL-TLSS-RAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETAL 149 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~-~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~~~al 149 (470)
+|||.++... ++ .+|.+.+++.++++.. ..++ .....++++++++++.+.+| .+ +|++|+||++|++.++
T Consensus 27 ~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGFPD--ED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 6888887543 44 6899999999999762 1111 11123345556666655445 34 8999999999999999
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC--eeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--HLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+++.. +|+ .|++..++||+....... .+..... .+..++ ... .|+++|++++++ ++++
T Consensus 104 ~~~~~---------~gd-~Vl~~~~~y~~~~~~~~~-~g~~~~~---v~~~~~~~~~~---~d~~~l~~~l~~---~~~~ 163 (411)
T 2o0r_A 104 LGLVE---------PGS-EVLLIEPFYDSYSPVVAM-AGAHRVT---VPLVPDGRGFA---LDADALRRAVTP---RTRA 163 (411)
T ss_dssp HHHCC---------TTC-EEEEEESCCTTHHHHHHH-TTCEEEE---EECEEETTEEE---CCHHHHHHHCCT---TEEE
T ss_pred HHhcC---------CCC-EEEEeCCCcHhHHHHHHH-cCCEEEE---eeccccccCCC---CCHHHHHHhhcc---CceE
Confidence 97743 454 788899999886543322 2211110 011000 111 289999999875 7888
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-ccccc----CCCCcceeecccccc-CCCcc
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDW----EEVRPDMVILGKALG-GGVIP 301 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~----~~~~pdi~s~sK~l~-gG~~~ 301 (470)
|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. ..+.. .+....+.++||.++ +|+ |
T Consensus 164 v~l~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r 241 (411)
T 2o0r_A 164 LIINSPHNPTGAVL-SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGW-K 241 (411)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTT-C
T ss_pred EEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccc-e
Confidence 88777799999998 8899999999999999999999999988776642 12221 233344669999998 898 9
Q ss_pred eeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-
Q 012138 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR- 378 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~- 378 (470)
+|++++++++++.+.......+++.++++++++.++|+...+ +++.++++++++++.+.|++++ +....+.
T Consensus 242 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~ 315 (411)
T 2o0r_A 242 IGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEIG------FAVHDSYG 315 (411)
T ss_dssp EEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHT------CEECCCCB
T ss_pred EEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcC------CEecCCCe
Confidence 999999999998876554555677788888888888875422 4567777888888888887752 2222333
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHH-HcCceeccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
|.++++.+.... ..+..+++++|. ++||.+.++ ..+++||+++ .+++++++++++|.++
T Consensus 316 g~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~ 392 (411)
T 2o0r_A 316 TYFLCADPRPLG-YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVL 392 (411)
T ss_dssp SSEEEEECGGGT-CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGG
T ss_pred eEEEEEecCCCC-CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 556666665310 024678888887 569998753 2468999964 5899999999999988
Q ss_pred Hhccc
Q 012138 441 LELDL 445 (470)
Q Consensus 441 l~~~~ 445 (470)
++ +.
T Consensus 393 ~~-~~ 396 (411)
T 2o0r_A 393 AE-RP 396 (411)
T ss_dssp GC---
T ss_pred Hh-cc
Confidence 87 54
No 84
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.98 E-value=5.2e-31 Score=261.91 Aligned_cols=325 Identities=17% Similarity=0.193 Sum_probs=234.2
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-CCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~ 153 (470)
++||.++... ++ .+|.+.+++.++++... .|. .....++++.++++++. +++++++||++|++.+++.+.
T Consensus 27 ~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~ 99 (381)
T 1v2d_A 27 AVNLGQGFPS--NP-PPPFLLEAVRRALGRQD----QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (381)
T ss_dssp CEECCCCSCS--SC-CCHHHHHHHHHHTTTSC----SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred eEEecCCCCC--CC-CCHHHHHHHHHHHHHhc----CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence 6788888643 34 78999999999886511 122 22467889999988875 579999999999999999874
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--CCeeeecCCCHHHHHHHHHhcCCCeEEEEEc
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--PGHLKVDFGDITALEKIFKESGDQIAGFLFE 231 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~e 231 (470)
. +|+ .|++..++||+...... ..+..... .+.. ++...+ |+++|++++++ ++++|+++
T Consensus 100 ~---------~gd-~Vl~~~~~~~~~~~~~~-~~g~~~~~---v~~~~~~~~~~~---d~~~l~~~l~~---~~~~v~~~ 159 (381)
T 1v2d_A 100 G---------PGD-EVVVLEPFFDVYLPDAF-LAGAKARL---VRLDLTPEGFRL---DLSALEKALTP---RTRALLLN 159 (381)
T ss_dssp C---------TTC-EEEEEESCCTTHHHHHH-HTTCEEEE---EECEEETTEEEC---CHHHHHTTCCT---TEEEEEEE
T ss_pred C---------CCC-EEEEcCCCchhHHHHHH-HcCCEEEE---EeCCCCCccCCc---CHHHHHHhcCc---CCEEEEEC
Confidence 3 344 88889999988654332 22211110 1110 011122 89999988864 78888877
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccc--cCCCCcceeecccccc-CCCcceeEEEe
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASD--WEEVRPDMVILGKALG-GGVIPVSAVLA 307 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~--~~~~~pdi~s~sK~l~-gG~~~ig~v~~ 307 (470)
.++||+|.++ +.+++++|.++|++||++||+||+|+++.+ |.. .... ..+..+++.+++|.++ +|+ |+|++++
T Consensus 160 ~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~-r~G~~~~ 236 (381)
T 1v2d_A 160 TPMNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGY-RVGWIVG 236 (381)
T ss_dssp SSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGG-CCEEEEC
T ss_pred CCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCccc-ceEEEEe
Confidence 7899999998 889999999999999999999999998754 321 1111 3456667789999998 788 9999999
Q ss_pred cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH--hh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-ceeE
Q 012138 308 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI--RD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFN 382 (470)
Q Consensus 308 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~-g~~~ 382 (470)
++++++.+.......+++.++++++++.++|+.. ++ +++.++++++++++.+.|++++ +....+. |.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~ 310 (381)
T 1v2d_A 237 PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG------LRVYVPEGTYFL 310 (381)
T ss_dssp CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT------CCEECCSBSSEE
T ss_pred CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCC------CEecCCCcceEE
Confidence 9998888765445557788999999998998865 32 4567778888888888887731 3333444 4555
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++.+... + +.+.|.++||.+.++ ..+++||+++. +++++++++++|.++++ +.++
T Consensus 311 ~~~~~~~----~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~-~~r~ 373 (381)
T 1v2d_A 311 MAELPGW----D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVN-SPRE 373 (381)
T ss_dssp EEECTTC----C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC------
T ss_pred EEecChH----h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHh-hccc
Confidence 5554321 2 667778889998764 36799999765 99999999999999998 7654
No 85
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.98 E-value=2.6e-31 Score=264.59 Aligned_cols=330 Identities=14% Similarity=0.149 Sum_probs=229.4
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccc-cC-CCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-SS-RAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETA 148 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~-~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~~~a 148 (470)
.+|||..+.. +++ .+|.+.+++.++++.... ++ .....++++.+++++.+.+| .+ ++++|+||++|++.+
T Consensus 31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 107 (386)
T 1u08_A 31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107 (386)
T ss_dssp TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence 3678888754 344 689999999999875211 11 11123345555555555445 35 899999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
++.+.. +|+ .|++..++||+.......... ..... +..++... .|+++|+++++. ++++|
T Consensus 108 ~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~~g~-~~~~v---~~~~~~~~---~d~~~l~~~l~~---~~~~v 167 (386)
T 1u08_A 108 ITALVR---------NGD-EVICFDPSYDSYAPAIALSGG-IVKRM---ALQPPHFR---VDWQEFAALLSE---RTRLV 167 (386)
T ss_dssp HHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTC-EEEEE---ECCTTTCC---CCHHHHHHHCCT---TEEEE
T ss_pred HHHhCC---------CCC-EEEEeCCCchhHHHHHHHcCC-EEEEe---ecCcccCc---CCHHHHHHhhcc---cCEEE
Confidence 998743 344 888899999876543322221 11100 11000011 289999998864 78888
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----cccc-cCCCCcceeecccccc-CCCcce
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASD-WEEVRPDMVILGKALG-GGVIPV 302 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~-~~~~~pdi~s~sK~l~-gG~~~i 302 (470)
+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. .... ..+..+.+.++||.++ +|+ |+
T Consensus 168 ~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~ 245 (386)
T 1u08_A 168 ILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGW-KV 245 (386)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGG-CC
T ss_pred EEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCccc-ce
Confidence 8777799999998 8899999999999999999999999988766642 1221 2344455679999998 798 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-c
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-G 379 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~-g 379 (470)
|++++++++++.+.......+++.++++++++.++|+...+ ++++++++++++++.+.|+++ .+....+. |
T Consensus 246 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~~~~g 319 (386)
T 1u08_A 246 GYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES------RLEILPCEGT 319 (386)
T ss_dssp EEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS------SCEECCCCBS
T ss_pred EEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC------CCeecCCCce
Confidence 99999999998887655556788889998888888875422 445666667777776666553 13333344 5
Q ss_pred eeEEEEeccCCCchhHHHHHHHHH-HcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 380 LFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.++++.+.... ..+..++++.|. ++||.+.|+ ..+++||+++ .++++|++++++|++
T Consensus 320 ~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 320 YFLLVDYSAVS-TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp SEEEEECTTTC-CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred EEEEEecCCCC-CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 56666654320 025678888887 579998764 3579999965 589999999999864
No 86
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.98 E-value=2.5e-31 Score=262.22 Aligned_cols=323 Identities=14% Similarity=0.136 Sum_probs=231.4
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETAL 149 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al 149 (470)
.+|+.+|||.++.... ..+|++.+++.++++........+......++++.++++++ .+++++|+||++|++.++
T Consensus 23 ~~~~~~i~l~~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNENPY---PPSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCCCSS---CCCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCCCCC---CCCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 4678899999886432 38899999999998764211122333345789999999887 568999999999999999
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL 229 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi 229 (470)
+.+.. +|+ .|++..++|++........+.. +..++.++-..++++++.. ++++++
T Consensus 100 ~~l~~---------~gd-~Vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~l~~~~--~~~~v~ 154 (360)
T 3hdo_A 100 RAFAA---------EGE-EIGYVHPSYSYYGTLAEVQGAR-------------VRTFGLTGDFRIAGFPERY--EGKVFF 154 (360)
T ss_dssp HHHCC---------TTC-EEEEESSSCTHHHHHHHHHTCE-------------EEEECBCTTSSBTTCCSSB--CSSEEE
T ss_pred HHHhC---------CCC-EEEEcCCChHHHHHHHHHCCCE-------------EEEeeCCCCCCHHHHHhhc--CCCEEE
Confidence 97754 455 7888999998765444333221 1222222111112222222 234666
Q ss_pred EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEec
Q 012138 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLAD 308 (470)
Q Consensus 230 ~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~ 308 (470)
++.++||+|.++| ++++.++|+++|++||+||+|++|...+.....+..+....+.++||.++ +|+ |+|+++++
T Consensus 155 i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~ 229 (360)
T 3hdo_A 155 LTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGM-RIGLAIAR 229 (360)
T ss_dssp EESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTS-CCEEEECC
T ss_pred EeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCcc-ceeeEeeC
Confidence 5556999999998 88999999999999999999998743322222233343445669999997 888 99999999
Q ss_pred HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec
Q 012138 309 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 309 ~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
+++++.+.... .+++.++++++++.++|+..+. ++..++++++.+++.+.|+++ .+...++.|.++++.+.
T Consensus 230 ~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~~~ 301 (360)
T 3hdo_A 230 PEVIAALDKIR--DHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI------GYDVIPSQGNYLFATPP 301 (360)
T ss_dssp HHHHHHHHHHS--CSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT------TCEECCCSSSEEEEECT
T ss_pred HHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC------CCEEcCCCccEEEEECC
Confidence 99998886433 4578999999999988875221 456666777777777777664 13445677888877654
Q ss_pred cCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 388 KTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. .+..++.+.|.++||.+.++. .+++|+++. +++|+++++++|+++.+
T Consensus 302 ~----~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 302 D----RDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp T----CCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred C----CCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 2 267889999999999998764 489999943 89999999999998876
No 87
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.98 E-value=1.1e-30 Score=259.05 Aligned_cols=308 Identities=15% Similarity=0.198 Sum_probs=226.1
Q ss_pred HHHHHHHHHccccCCCCCCCcHHHHHHHHhhhh---CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEcc
Q 012138 98 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174 (470)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~ 174 (470)
+++.+++......+ .......++++.+++++ +.+++++++||++|++.+++++.. +|+ .|++..+
T Consensus 46 ~~~~~~~~~~~~~y--~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~---------~gd-~Vl~~~~ 113 (375)
T 3op7_A 46 EDFYKKLQGTKLNY--GWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIE---------PGD-HVISLYP 113 (375)
T ss_dssp HHHHHHHHTSCCSS--CCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCC---------TTC-EEEEEES
T ss_pred HHHHHHHhcCCcCC--CCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcC---------CCC-EEEEeCC
Confidence 44555554433221 12233578888888875 347899999999999999997754 455 7888999
Q ss_pred CccccccchhcccCCcccccCCCCCCCCeeeecCC-------CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 175 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 175 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
+|++........+... ..++.+ |+++|++++++ ++++|++++++||+|.++ +.+++
T Consensus 114 ~~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~-~~~~l 176 (375)
T 3op7_A 114 TYQQLYDIPKSLGAEV-------------DLWQIEEENGWLPDLEKLRQLIRP---TTKMICINNANNPTGAVM-DRTYL 176 (375)
T ss_dssp SCTHHHHHHHHTTCEE-------------EEEEEEGGGTTEECHHHHHHHCCT---TCCEEEEESSCTTTCCCC-CHHHH
T ss_pred CchhHHHHHHHcCCEE-------------EEEeccccCCCCCCHHHHHHhhcc---CCeEEEEcCCCCCCCCCC-CHHHH
Confidence 9887554333222211 122211 89999999875 788889888899999999 89999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCC
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGG 326 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~ 326 (470)
++|.++|++||++||+||+|+++++.+.....+.++..+++.||||.++ +|+ |+|++++++++++.+.......+++.
T Consensus 177 ~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~v~~~~~l~~~~~~~~~~~~~~~ 255 (375)
T 3op7_A 177 EELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGI-RIGWVAANHQVTDILRDYRDYTMICA 255 (375)
T ss_dssp HHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGG-CCEEEECCHHHHHHHTTTGGGTTSCC
T ss_pred HHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCccc-ceEEEEeCHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999998776533333444555677889999998 898 99999999999999987777788889
Q ss_pred CHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce-eEEEEeccCCCchhHHHHHHHH-
Q 012138 327 NPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-FNAVEFDKTALPVSAYDICLKM- 402 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~l- 402 (470)
++++++++.++++..++ +..++.++++.+.+.+.|++ +| .+..+.+.|. +.++.+.... +..++++.|
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll 327 (375)
T 3op7_A 256 GVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEE----EP-LVSYIRPAVVSTSFVKIAVDM---PMEDFCLQLL 327 (375)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----CT-TEEECCCSSSSCEEEEECCSS---CHHHHHHHHH
T ss_pred CcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh----CC-CceEecCCCeEEEeEEcCCCC---CHHHHHHHHH
Confidence 99999999888875432 33444445566666665554 32 4555555544 4555454432 677888888
Q ss_pred HHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 403 KERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 403 ~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.++||.+.|+. .+++|++ +..+++++++++++|.++++ ++.
T Consensus 328 ~~~gi~v~~g~~~~~~~~iRi~--~~~~~~~i~~~l~~l~~~l~-~~~ 372 (375)
T 3op7_A 328 QEHGVLLVPGNRFERDGYVRLG--FACEQETLIKGLEKLSQFLR-RFD 372 (375)
T ss_dssp HHHCEECEEGGGGTCTTEEEEC--CCSCHHHHHHHHHHHHHHHG-GGC
T ss_pred HhCCEEEeChhhhCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH-HHh
Confidence 47799998764 6899999 55677999999999999999 764
No 88
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=7.2e-30 Score=255.44 Aligned_cols=332 Identities=15% Similarity=0.167 Sum_probs=236.9
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC----C-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA----F-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVET 147 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~----~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~ 147 (470)
+|++|+||.++.. ..++ .+|++.+++.++++.....+.. + ..+...++++.++++++.+..+++++|++++..
T Consensus 44 ~g~~~i~~~~~~~-~~~~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~ 121 (401)
T 2bwn_A 44 GKQDITVWCGNDY-LGMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDA 121 (401)
T ss_dssp CEEEEEECSCSCT-TSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHH
T ss_pred CCCcEEEeeCCCc-ccCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHH
Confidence 6899999987621 1233 4789999999999875432211 1 234578899999999987766666778889988
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~~ 226 (470)
++.++..+. +|+ .|++..++|++. .......+ ..+..++++|+++|++++++.. ++++
T Consensus 122 ~~~~l~~~~-------~gd-~Vl~~~~~~~~~-~~~~~~~g------------~~~~~v~~~d~~~le~~l~~~~~~~~~ 180 (401)
T 2bwn_A 122 TLSTLRVLF-------PGL-IIYSDSLNHASM-IEGIKRNA------------GPKRIFRHNDVAHLRELIAADDPAAPK 180 (401)
T ss_dssp HHHHHHHHS-------TTC-EEEEETTCCHHH-HHHHHHSC------------CCEEEECTTCHHHHHHHHHHSCTTSCE
T ss_pred HHHHHhcCC-------CCC-EEEECchhhHHH-HHHHHHcC------------CeEEEEcCCCHHHHHHHHHhhccCCce
Confidence 888653210 354 777777775443 33332222 1245677789999999998543 3789
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCCC----CcceeeccccccCCCc
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV----RPDMVILGKALGGGVI 300 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~~----~pdi~s~sK~l~gG~~ 300 (470)
+|++++++||+|.+.| +++|.++|++||+++|+||+|+ | +++.|..+. ..+++ .+.+.+|||+++.
T Consensus 181 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~--- 252 (401)
T 2bwn_A 181 LIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV--- 252 (401)
T ss_dssp EEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS---
T ss_pred EEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC---
Confidence 9999999999999997 9999999999999999999999 4 566665542 33333 2334599999983
Q ss_pred ceeEEEecHHHHhhcCcCCc--cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 301 PVSAVLADKEVMLCIQPGEH--GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
+.|++++++++++.+..... ..+.+.++++++++.++++.+++ +++.++++++++++.+.|++++ +. ..
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~--- 326 (401)
T 2bwn_A 253 FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALG--MP-II--- 326 (401)
T ss_dssp CCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHT--CC-BC---
T ss_pred CCCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCC--Cc-cc---
Confidence 22678889988877653211 11223467888888999998765 4678888999999999998862 21 22
Q ss_pred eccceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 376 RGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.+.++++.+... .+..++++.|+ ++||.+.|+. .+++|++++..+|++++++++++|+++++ ++
T Consensus 327 ~~~~~~~~~~~~~~---~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~-~~ 400 (401)
T 2bwn_A 327 DHGSHIVPVVIGDP---VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA-RC 400 (401)
T ss_dssp CCSSSCEEEECCCH---HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC----
T ss_pred CCCCCeEEEEeCCh---HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH-hc
Confidence 34566777766431 36778999996 7799987542 25899999988999999999999999887 54
No 89
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=2.2e-31 Score=267.35 Aligned_cols=329 Identities=13% Similarity=0.119 Sum_probs=231.7
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
+|+.++||.++... ++ .+|.+.+++ ++++.....+ .....++++.+++++.+..+ .+++++|+||++|++
T Consensus 41 ~g~~~i~l~~~~~~--~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~ 116 (409)
T 2gb3_A 41 RGVRIHHLNIGQPD--LK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL 116 (409)
T ss_dssp TTCEEEECSSCCCC--SC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEeccCCCCC--CC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHH
Confidence 57889999888653 34 578999999 8875432111 11122334455555544333 368999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----C-HHHHHHHHHh
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----D-ITALEKIFKE 220 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~Le~~l~~ 220 (470)
.+++++.. +|+ .|++..++|++........+. . +..++.+ + +++|++++++
T Consensus 117 ~~~~~~~~---------~gd-~Vl~~~~~~~~~~~~~~~~g~-~------------~~~v~~~~~~~~~~~~~l~~~l~~ 173 (409)
T 2gb3_A 117 FSFAVIAN---------PGD-EILVLEPFYANYNAFAKIAGV-K------------LIPVTRRMEEGFAIPQNLESFINE 173 (409)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTHHHHHHHHHTC-E------------EEEEECCGGGTSCCCTTGGGGCCT
T ss_pred HHHHHhCC---------CCC-EEEEcCCCchhHHHHHHHcCC-E------------EEEeccCCCCCCccHHHHHHhhCc
Confidence 99997743 354 788899999876554332221 1 1223322 1 5677777754
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC-Cccee--ecccccc-
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMV--ILGKALG- 296 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~--s~sK~l~- 296 (470)
++++|++++++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|..... ..+. ..|++ ++||.++
T Consensus 174 ---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~ 248 (409)
T 2gb3_A 174 ---RTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSA 248 (409)
T ss_dssp ---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTC
T ss_pred ---CCeEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCC
Confidence 788888777799999998 8899999999999999999999999988776644332 1122 23544 8899998
Q ss_pred CCCcceeEEEecH-HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 297 GGVIPVSAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 297 gG~~~ig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+|+ |+|++++++ ++++.+.......+ +.++++++++.++|+...+ +.+.++++++++++.+.|++++ +. .+
T Consensus 249 ~G~-r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~- 322 (409)
T 2gb3_A 249 CGA-RVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHG--LK-RF- 322 (409)
T ss_dssp GGG-CCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CC-CB-
T ss_pred ccc-eEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcC--ce-ee-
Confidence 788 999999998 88888765444445 7889999988888853221 4466777778888888887752 11 10
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHHc------CceeccC---------CCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKER------GILAKPT---------HDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~~~~~---------~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
..+..|.+.++.+. . .+..++++.|.++ ||.+.++ ..+++|++++ ++++++++++++|+
T Consensus 323 ~~~~~~~~~~~~~~-~---~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~ 396 (409)
T 2gb3_A 323 TKPSGAFYITAELP-V---EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLM 396 (409)
T ss_dssp CCCSBSSEEEEECS-S---SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHH
T ss_pred eCCCeeEEEEEEeC-C---CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHH
Confidence 11233555555554 2 2678899999987 9998764 2679999976 89999999999999
Q ss_pred HHHhcccC
Q 012138 439 DVLELDLP 446 (470)
Q Consensus 439 ~~l~~~~~ 446 (470)
++++ +++
T Consensus 397 ~~l~-~~~ 403 (409)
T 2gb3_A 397 EGLK-MFC 403 (409)
T ss_dssp HHHH-HHH
T ss_pred HHHH-Hhh
Confidence 9998 764
No 90
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.97 E-value=7e-31 Score=266.88 Aligned_cols=339 Identities=12% Similarity=0.091 Sum_probs=234.7
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc--CCCC-CCCcHHHHHHHHhhhh------CCCeEEecCChh
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS--SRAF-YNDKFPVFAERLTSMF------GYDMVLPMNTGA 142 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~-~~~~~~~l~~~l~~~~------~~~~v~~~~sGt 142 (470)
.+|+++|||.++....+ .+|+|.+++.++++..... ...| ......++++.+++++ ..+.+++++|++
T Consensus 66 ~~~~~~i~l~~g~~~~~---~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGDTTEP---LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCCCCCC---CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCCCCCC---CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 46889999999864433 7899999999999864321 1122 1233567777777776 346899999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
+++..+ ..+.. +|+ .|++..++|++................ ....++..+++++.+.+...+.+.
T Consensus 143 ~al~~~-~~l~~---------~gd-~Vl~~~p~~~~~~~~~~~~g~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~- 207 (449)
T 3qgu_A 143 CDIARI-QMMFG---------SKP-TVAVQDPSYPVYVDTSVMMGMTGDHNG---TGFDGIEYMVCNPDNHFFPDLSKA- 207 (449)
T ss_dssp HHHHHH-HHHHC---------SSS-CEEEEESCCTHHHHHHHHHTCSCCBCS---SSBTTEEEEECCGGGTTCCCGGGC-
T ss_pred HHHHHH-HHHhC---------CCC-EEEEcCCCChhHHHHHHHcCCcccccc---cccceeEEEecccccCCcCChhHc-
Confidence 999988 54443 454 788899999887655444333210000 000113444444221211111211
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC----CCCcceeecccccc-
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE----EVRPDMVILGKALG- 296 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~----~~~pdi~s~sK~l~- 296 (470)
.++++|+++.++||+|.++ +.+++++|+++|++||++||+||+|++|++.|.. ..+..+ +..+.+.+|||.++
T Consensus 208 ~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 286 (449)
T 3qgu_A 208 KRTDIIFFCSPNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGF 286 (449)
T ss_dssp CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTC
T ss_pred CCCCEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCC
Confidence 2677777666699999999 8999999999999999999999999998776632 122222 23345679999998
Q ss_pred CCCcceeEEEecHHHHhh--------cCcCCccCCCCCCHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHH
Q 012138 297 GGVIPVSAVLADKEVMLC--------IQPGEHGSTFGGNPLASAVAIASLDVIR---DEKLAERSAHLGEELRQHLFKIQ 365 (470)
Q Consensus 297 gG~~~ig~v~~~~~~~~~--------~~~~~~~~t~~~~~~~~aaa~a~l~~~~---~~~~~~~~~~~~~~l~~~L~~l~ 365 (470)
+|+ |+|++++++++++. +.......+++.++++++++.++++... .+++.++++++++++.+.|++++
T Consensus 287 ~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 365 (449)
T 3qgu_A 287 TGV-RLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG 365 (449)
T ss_dssp TTC-CCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccc-eeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 898 99999999887652 2222334455789999999988886521 14577778888888888887752
Q ss_pred hhCCCceEEEecc-ceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCC------CCEEEEecCCCCCHHHHHHHHHHH
Q 012138 366 QQFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 366 ~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+....+. |.++++.+. . .+..++++.|+++ ||.+.|+. .+++||+ +..++++|++++++|
T Consensus 366 ------~~~~~~~~~~~~~~~~~-~---~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l 433 (449)
T 3qgu_A 366 ------FSVYGGDDAPYIWVGFP-G---KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRF 433 (449)
T ss_dssp ------CCEEESSSSSEEEEECT-T---SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHH
T ss_pred ------CeeeCCCCeeEEEEECC-C---CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHH
Confidence 3334454 666666554 2 3678899888877 99988652 6899999 667999999999999
Q ss_pred HHHHh
Q 012138 438 HDVLE 442 (470)
Q Consensus 438 ~~~l~ 442 (470)
+++++
T Consensus 434 ~~~~~ 438 (449)
T 3qgu_A 434 KEAYG 438 (449)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99998
No 91
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=1.7e-30 Score=256.66 Aligned_cols=322 Identities=16% Similarity=0.161 Sum_probs=233.1
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~ 152 (470)
+.+|||.++... ++ .+|++++++.++++.... +......++++.++++++ .+++++++||++|++.+++.+
T Consensus 30 ~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l 102 (365)
T 3get_A 30 KEVIKLASNENP--FG-TPPKAIECLRQNANKAHL----YPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK 102 (365)
T ss_dssp SCCEECSSCCCT--TC-SCHHHHHHHHHHGGGTTS----CCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEecCCCCC--CC-CCHHHHHHHHHHHHhhcc----CCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence 678999988544 33 789999999998874332 222233788999999887 468999999999999999977
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEcc
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ep 232 (470)
.. +|+ .|++..++|++........+... . +.+...+.. + |+++|+++++. ++++|+++.
T Consensus 103 ~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~~-~---~v~~~~~~~-~---d~~~l~~~l~~---~~~~v~~~~ 161 (365)
T 3get_A 103 LN---------SKN-AFLQAGVTFAMYEIYAKQCGAKC-Y---KTQSITHNL-D---EFKKLYETHKD---EIKLIFLCL 161 (365)
T ss_dssp CC---------TTC-EEEECSSCCTHHHHHHHHHTCEE-E---ECSSSSCCH-H---HHHHHHHHTTT---TEEEEEEES
T ss_pred hC---------CCC-EEEEeCCChHHHHHHHHHcCCEE-E---EEecCCCCC-C---CHHHHHHHhCC---CCCEEEEcC
Confidence 53 454 78888999876554433322211 1 111101112 3 78999998874 789998766
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc--c-CCccc----cccCCCCcceeecccccc-CCCcceeE
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR--S-GRMLA----SDWEEVRPDMVILGKALG-GGVIPVSA 304 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~--~-G~~~~----~~~~~~~pdi~s~sK~l~-gG~~~ig~ 304 (470)
++||+|.++ +.+.+++|.++| ++|+++|+||+|+++.+ . +.... .+..+....+.|+||.++ +|+ |+|+
T Consensus 162 p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~ 238 (365)
T 3get_A 162 PNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGL-RIGY 238 (365)
T ss_dssp SCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTT-CCEE
T ss_pred CCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcch-heEE
Confidence 699999999 777777777777 57999999999997652 2 22111 122233334559999998 898 9999
Q ss_pred EEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEE
Q 012138 305 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA 383 (470)
Q Consensus 305 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~ 383 (470)
+++++++++.+.... .+++.++++++++.++|+..+. +...++++++.+++.+.|+++ .+...++.|.+++
T Consensus 239 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~~~~~~~~~~~ 310 (365)
T 3get_A 239 GIANANIISAFYKLR--APFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH------NIKIIDSYTNFIT 310 (365)
T ss_dssp EEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT------TCEECCCSSSEEE
T ss_pred EEcCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC------CCEECCCCCeEEE
Confidence 999999998886433 3467899999999888874321 445666677777777777664 2444567788877
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTH---DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.+... +..++.+.|.++||.+.++. .+++|++++ +++++++++++|+++++
T Consensus 311 ~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 311 YFFDEK----NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKILR 365 (365)
T ss_dssp EECSSS----CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred EECCCC----CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHhC
Confidence 765432 57789999999999998876 689999954 89999999999998864
No 92
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=3.8e-30 Score=258.12 Aligned_cols=335 Identities=11% Similarity=0.111 Sum_probs=228.9
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc---cCCCCCCCcHHHHHHHHhhhhC----C-CeEEecCChhHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL---SSRAFYNDKFPVFAERLTSMFG----Y-DMVLPMNTGAEGVE 146 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~----~-~~v~~~~sGteA~~ 146 (470)
..+|||..+.... ..+|++.+++.++++.... .......++++.+++++.+.++ . ++|++++||++|++
T Consensus 23 ~~~i~l~~~~~~~---~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 23 PSVVNLGQGFPDI---SPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TTSEECSSCCCCS---CCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCeEEecCCCCCC---CCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 4578888885432 2789999999999875321 1111123445555555554433 3 68999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-------CCeeeecCCCHHHHHHHHH
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-------PGHLKVDFGDITALEKIFK 219 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d~~~Le~~l~ 219 (470)
.+++.+.. +|+ .|++..++|++........+.. ....++.+.. .....+ |+++|+++++
T Consensus 100 ~~~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~~~---d~~~l~~~~~ 165 (410)
T 3e2y_A 100 NSIQGLVD---------PGD-EVIIMVPFYDCYEPMVRMAGAV-PVFIPLRSKPTDGMKWTSSDWTF---DPRELESKFS 165 (410)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTCE-EEEEECEECCCCSSCCBGGGEEC---CHHHHHTTCC
T ss_pred HHHHHhcC---------CCC-EEEEeCCCchhhHHHHHHcCCE-EEEEeccccccccccccccCCcC---CHHHHHhhcC
Confidence 99998753 454 7888999987765443332221 1111000000 001122 8899998886
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC----CCCcceeecccc
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE----EVRPDMVILGKA 294 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~----~~~pdi~s~sK~ 294 (470)
+ ++++|++++++||+|.++ +++.+++|.++|++||++||+||+|++|.+.|..+ .+... +...++.+|||.
T Consensus 166 ~---~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~ 241 (410)
T 3e2y_A 166 S---KTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKT 241 (410)
T ss_dssp T---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHH
T ss_pred C---CceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhh
Confidence 5 789998878899999999 88899999999999999999999999988777532 22222 222345589999
Q ss_pred cc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH-------hh--hhHHHHHHHHHHHHHHHHHHH
Q 012138 295 LG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI-------RD--EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 295 l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~-------~~--~~~~~~~~~~~~~l~~~L~~l 364 (470)
++ +|+ |+|++++++++++.+.......+++.++++++++.++|+.. .+ +++.++++++++++.+.|+++
T Consensus 242 ~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 320 (410)
T 3e2y_A 242 FSVTGW-KLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV 320 (410)
T ss_dssp SSCGGG-CCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCc-eEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 98 898 99999999999998876666778889999999999888741 11 345556666667777666653
Q ss_pred HhhCCCceEEEe-ccceeEEEEeccCCCc--------hhHHHHHHHHH-HcCceeccCC-----------CCEEEEecCC
Q 012138 365 QQQFPNYVKEVR-GRGLFNAVEFDKTALP--------VSAYDICLKMK-ERGILAKPTH-----------DTIVRLTPPL 423 (470)
Q Consensus 365 ~~~~p~~~~~~~-~~g~~~~~~~~~~~~~--------~~~~~~~~~l~-~~Gv~~~~~~-----------~~~iR~~~~~ 423 (470)
.+.... ..|.++++.+.....+ .+..++++.|+ ++||.+.|+. .+++||+ +
T Consensus 321 ------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~ 392 (410)
T 3e2y_A 321 ------GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--F 392 (410)
T ss_dssp ------TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--C
T ss_pred ------CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--E
Confidence 133333 4455555555331100 12347777665 5699987642 4799999 5
Q ss_pred CCCHHHHHHHHHHHHH
Q 012138 424 SISSNELQEGSKALHD 439 (470)
Q Consensus 424 ~~t~e~i~~~~~~l~~ 439 (470)
..++++|++++++|++
T Consensus 393 ~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 393 IKKDSTLDAAEEIFRA 408 (410)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6699999999999875
No 93
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=3.7e-30 Score=256.26 Aligned_cols=334 Identities=15% Similarity=0.148 Sum_probs=228.1
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVET 147 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~ 147 (470)
|+.++||..+... ++ .+|.+.+++.+.++.....+ .....++++++++++.+.++ .++|++|+||++|+..
T Consensus 30 ~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGEPD--FD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred CCCEEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence 4556788877442 22 57899999988886532111 11233455666666655444 3679999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
+++.+.. +|+ .|++..++|++........+. .... .+..+ +...+ |+++|++++++ +++
T Consensus 107 ~~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~-~~~~---v~~~~~~~~~~---d~~~l~~~l~~---~~~ 166 (385)
T 1b5p_A 107 LFQAILD---------PGD-EVIVLSPYWVSYPEMVRFAGG-VVVE---VETLPEEGFVP---DPERVRRAITP---RTK 166 (385)
T ss_dssp HHHHHCC---------TTC-EEEEEESCCTHHHHHHHHTTC-EEEE---EECCGGGTTCC---CHHHHHTTCCT---TEE
T ss_pred HHHHhcC---------CCC-EEEEcCCCchhHHHHHHHcCC-EEEE---eecCcccCCCC---CHHHHHHhcCC---CCE
Confidence 9987743 455 788899998765433322211 1110 01000 00111 78999888865 688
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC--CCCcceeecccccc-CCCccee
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE--EVRPDMVILGKALG-GGVIPVS 303 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~--~~~pdi~s~sK~l~-gG~~~ig 303 (470)
+|++..++||||.++ +.+.+++|.++|++||++||+||+|+.+.+.|....+..+ +....+.+|||.++ +|+ |+|
T Consensus 167 ~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG 244 (385)
T 1b5p_A 167 ALVVNSPNNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGW-RIG 244 (385)
T ss_dssp EEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGG-CCE
T ss_pred EEEEeCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCccc-ceE
Confidence 777544599999999 8999999999999999999999999987655532222222 11122348999998 798 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH---Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV---IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~---~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~ 378 (470)
++++++++++.+.......+++.+.+++.++.++|+. ..+ ++.+++++++++++.+.|++++ +....+.
T Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~ 318 (385)
T 1b5p_A 245 YACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG------LKAVRPS 318 (385)
T ss_dssp EEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------CCBCCCS
T ss_pred EEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCC------CeecCCC
Confidence 9999999988876554455677888888888888863 222 4466777778888888887762 1122344
Q ss_pred ceeEEE-EeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 379 GLFNAV-EFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 379 g~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|.++.| .+... +.+..++++.|.++||.+.++. ++++||++ ..+++++++++++|.++++
T Consensus 319 ~~~~~~~~~~~~--~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~--~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 319 GAFYVLMDTSPI--APDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEENLRKALERFARVLG 383 (385)
T ss_dssp BTTEEEEECTTT--CSSHHHHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHGGGGC-
T ss_pred eeEEEEEecCCC--CCCHHHHHHHHHHCCeEEecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 544444 44311 1367889999999999998763 57999995 4899999999999987765
No 94
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=4.7e-31 Score=266.64 Aligned_cols=340 Identities=10% Similarity=0.058 Sum_probs=235.0
Q ss_pred CeEEeccCCcccccCCCCCHHH--HHHHHHHHHHccccCCCCCC-CcHHHHHHHHhhhh-----C--CCe---EEecCCh
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKI--MKALQEQAEKLTLSSRAFYN-DKFPVFAERLTSMF-----G--YDM---VLPMNTG 141 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v--~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-----~--~~~---v~~~~sG 141 (470)
+.++||..+... ++|. +|.+ .+++.++++... ...|.. ....++++.+++++ + .++ +++|+||
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~ 122 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDE--IFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL 122 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGG--TSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCccc--ccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence 468999988652 4553 5666 777666654311 111211 12456666666655 4 367 9999999
Q ss_pred hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc-ccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHh
Q 012138 142 AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS-MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 142 teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~ 220 (470)
++|++.+++.+.. +|+ .|++..++|++....... .+. .... .+..++...+ |+++|++++++
T Consensus 123 ~~al~~~~~~l~~---------~gd-~Vl~~~p~y~~~~~~~~~~~g~-~~~~---~~~~~~~~~~---d~~~l~~~l~~ 185 (430)
T 2x5f_A 123 THGLSLVGDLFVN---------QDD-TILLPEHNWGNYKLVFNTRNGA-NLQT---YPIFDKDGHY---TTDSLVEALQS 185 (430)
T ss_dssp HHHHHHHHHHHCC---------TTC-EEEEESSCCTHHHHHHTTTTCC-EEEE---ECCBCTTSCB---CSHHHHHHHHH
T ss_pred hHHHHHHHHHHhC---------CCC-EEEEcCCcCccHHHHHHHhcCC-eEEE---EeccCccCCc---CHHHHHHHHHh
Confidence 9999999997753 454 788899999887554433 222 1111 1111100112 78999999987
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh-----cCcEEEEeccccCCcccCCcc-cc--ccCCCCcc-----
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-----YNILMIADEIQSGLARSGRML-AS--DWEEVRPD----- 287 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~-----~gillI~Dev~~g~g~~G~~~-~~--~~~~~~pd----- 287 (470)
++.+++++++..++||+|.++ +.+++++|.++|++ ||+++|+||+|+++.+.|..+ .. ...+..++
T Consensus 186 ~~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (430)
T 2x5f_A 186 YNKDKVIMILNYPNNPTGYTP-THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPI 264 (430)
T ss_dssp CCSSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEE
T ss_pred cCCCCEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEE
Confidence 544677766444499999998 89999999999999 999999999999887766421 11 11122333
Q ss_pred -eeecccccc-CCCcceeEEEe---cHHHHhhcCcCCcc----CCCCCCHHHHHHHHHHHH-H---Hhh-hhHHHHHHHH
Q 012138 288 -MVILGKALG-GGVIPVSAVLA---DKEVMLCIQPGEHG----STFGGNPLASAVAIASLD-V---IRD-EKLAERSAHL 353 (470)
Q Consensus 288 -i~s~sK~l~-gG~~~ig~v~~---~~~~~~~~~~~~~~----~t~~~~~~~~aaa~a~l~-~---~~~-~~~~~~~~~~ 353 (470)
+.++||.++ +|+ |+|++++ ++++++.+...... .+++.++++++++.++|+ . .+. +.+.++++++
T Consensus 265 ~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 343 (430)
T 2x5f_A 265 RLDGATKEFFAWGF-RVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKER 343 (430)
T ss_dssp EEEEHHHHTTCGGG-CCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCCCCC-CeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 458999998 898 9999999 99998887654433 678899999999998887 3 222 2356666666
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccce-eEEEEeccCCCchhHHHHHHHHHH-cCceeccCCCCEEEEecCCCCCHHHHH
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRGRGL-FNAVEFDKTALPVSAYDICLKMKE-RGILAKPTHDTIVRLTPPLSISSNELQ 431 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~iR~~~~~~~t~e~i~ 431 (470)
++++.+.|++..... .+....+.+. ++++.+. . .+..++++.|.+ +||.+.|+..+++||+++. .++++++
T Consensus 344 ~~~l~~~L~~~~~~~--g~~~~~~~~g~~~~~~~~-~---~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~ 416 (430)
T 2x5f_A 344 YEVTKEVVYADQYHS--HWQAYDFNSGYFMAIKVH-D---VDPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDDIP 416 (430)
T ss_dssp HHHHHHHHTCGGGTT--TEEECCCCBSSEEEEEES-S---SCHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGGHH
T ss_pred HHHHHHHHHhhCCCC--CceeeCCCceEEEEeCCC-C---CCHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHHHH
Confidence 777766665221111 2444455554 4666665 2 267789999998 8999999877899999875 5999999
Q ss_pred HHHHHHHHHHhccc
Q 012138 432 EGSKALHDVLELDL 445 (470)
Q Consensus 432 ~~~~~l~~~l~~~~ 445 (470)
+++++|+++++ ++
T Consensus 417 ~~~~~l~~~l~-~~ 429 (430)
T 2x5f_A 417 HVFDSIAKAID-DL 429 (430)
T ss_dssp HHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHH-hc
Confidence 99999999998 65
No 95
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.97 E-value=6e-30 Score=251.26 Aligned_cols=326 Identities=13% Similarity=0.073 Sum_probs=222.4
Q ss_pred EeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecC
Q 012138 62 SQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMN 139 (470)
Q Consensus 62 ~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~ 139 (470)
.+++|..+++.+|+.+|||.++....+ .+|++.+++.+++..... +......+++++++++++. +++++|+
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~~~~~---~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~i~~t~ 74 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTVWTDG---DKDHLEKHLVENLNCIRH----YPEPDAGTLRQMLAKRNSVDNNAILVTN 74 (350)
T ss_dssp --------------CCEECSCCSCCCS---CCHHHHHHHHHTGGGGGS----CCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred cccccchHhhhccccEEEccCCCCCCC---CCHHHHHHHHHhHhHHhc----CCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence 467899999999999999999864433 789999999888743322 2223337899999998875 5899999
Q ss_pred ChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC-CCHHHHHHHH
Q 012138 140 TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIF 218 (470)
Q Consensus 140 sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~Le~~l 218 (470)
||++|+..+++++. | +.|++..++|++........+.. +..++. ++.+.+..
T Consensus 75 g~~~al~~~~~~l~-----------g-d~Vi~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~~-- 127 (350)
T 3fkd_A 75 GPTAAFYQIAQAFR-----------G-SRSLIAIPSFAEYEDACRMYEHE-------------VCFYPSNEDIGEADF-- 127 (350)
T ss_dssp HHHHHHHHHHHHTT-----------T-CEEEEEESCCHHHHHHHHHTTCE-------------EEEEETTSCGGGSCC--
T ss_pred CHHHHHHHHHHHHC-----------C-CEEEEeCCCcHHHHHHHHHcCCe-------------EEEEecCCccccCcc--
Confidence 99999999998762 2 37888999998765443332221 234443 22222211
Q ss_pred HhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc--ccccCCCCcceeecccccc
Q 012138 219 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML--ASDWEEVRPDMVILGKALG 296 (470)
Q Consensus 219 ~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~--~~~~~~~~pdi~s~sK~l~ 296 (470)
+++++|+++.++||+|.++ +.+.+++|.++|+++ +||+||+|+++++.+... ..+..+....+.||||.++
T Consensus 128 ----~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 200 (350)
T 3fkd_A 128 ----SNMDFCWLCNPNNPDGRLL-QRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYG 200 (350)
T ss_dssp ----TTCSEEEEESSCTTTCCCC-CHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHS
T ss_pred ----CCCCEEEEeCCCCCcCCCC-CHHHHHHHHHhCCCC--EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhcc
Confidence 2677777666699999999 666666666666654 999999999887766442 1222232334558999998
Q ss_pred -CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 297 -GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 297 -gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+|+ |+|++++++++++.+.... .+++.++++++++.++|+.... +.+.+.. ++++++.+.|+++ | .+.
T Consensus 201 ~~G~-r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~~----~-~~~ 271 (350)
T 3fkd_A 201 IPGL-RIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRKWQ-RNTVDFITALNRL----D-GVE 271 (350)
T ss_dssp CGGG-CCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHHS----T-TEE
T ss_pred Ccch-heEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhcC----C-CcE
Confidence 898 9999999999999887543 4677899999999888875441 3344433 6667777776653 2 455
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
..++.|.++++.++.. ++.++++.|.+ +||.+.++. .+++||++ .+++++++++++|+++++ +-
T Consensus 272 ~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~---~~~~~~~~l~~al~~~~~-~~ 342 (350)
T 3fkd_A 272 VHPSGTTFFLLRLKKG----TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITT---QRPAQNQLFIKALETFLE-KY 342 (350)
T ss_dssp ECCCSSSEEEEEESSS----CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHHT-C-
T ss_pred ECCCCCcEEEEECCCC----CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEc---CCHHHHHHHHHHHHHHHH-Hh
Confidence 5667788887766542 57789999999 899998763 68999994 388999999999999987 53
No 96
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.97 E-value=5e-30 Score=258.94 Aligned_cols=338 Identities=12% Similarity=0.079 Sum_probs=226.7
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHH------------HHccccCC-CCCCCcHHHHHHHHhhhhC------CCeEE
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQA------------EKLTLSSR-AFYNDKFPVFAERLTSMFG------YDMVL 136 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~------------~~~~~~~~-~~~~~~~~~l~~~l~~~~~------~~~v~ 136 (470)
.++||.++.. +++ +|.+.+++.++. .....++. ....++++.+++++.+.+| .++++
T Consensus 37 ~~i~l~~~~~--~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAEN--QLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCCC--CSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeeccccc--hhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 4678876643 333 467888777432 11111111 1122334444554443322 46899
Q ss_pred ecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHH
Q 012138 137 PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALE 215 (470)
Q Consensus 137 ~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le 215 (470)
+++|++++++.+++++.. +|+ .|++..++|++.........+...... +... +...+ |+++|+
T Consensus 113 ~~~G~~~ai~~~~~~~~~---------~gd-~Vl~~~p~y~~~~~~~~~~~g~~~~~v---~~~~~~~~~~---d~~~l~ 176 (428)
T 1iay_A 113 MAGGATGANETIIFCLAD---------PGD-AFLVPSPYYPAFNRDLRWRTGVQLIPI---HCESSNNFKI---TSKAVK 176 (428)
T ss_dssp EEEHHHHHHHHHHHHHCC---------TTC-EEEEESSCCTTHHHHTTTTTCCEEEEE---CCCTTTTTCC---CHHHHH
T ss_pred EccChHHHHHHHHHHhCC---------CCC-eEEEccCCCcchHHHHHHhcCCEEEEe---ecCCccCCcC---CHHHHH
Confidence 999999999999998754 454 888899999876543322222211111 1100 00111 799999
Q ss_pred HHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-c---cccC----CC
Q 012138 216 KIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-A---SDWE----EV 284 (470)
Q Consensus 216 ~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~---~~~~----~~ 284 (470)
+++++. +.++++|++..++||+|.++ +.+++++|.++|++||++||+||+|+++++.+..+ . .... ++
T Consensus 177 ~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (428)
T 1iay_A 177 EAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYC 255 (428)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTS
T ss_pred HHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccC
Confidence 998752 23688777555599999999 89999999999999999999999999876655322 1 1111 22
Q ss_pred Ccc----eeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh---h--hhHHHHHHHH
Q 012138 285 RPD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR---D--EKLAERSAHL 353 (470)
Q Consensus 285 ~pd----i~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~---~--~~~~~~~~~~ 353 (470)
.+| +.|+||.++ +|+ |+|++++ ++++++.+... ..+++.++++++++.++|+... + +++.++++++
T Consensus 256 ~~d~viv~~s~sK~~g~~Gl-r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 256 NKDLVHIVYSLSKDMGLPGF-RVGIIYSFNDDVVNCARKM--SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp CTTSEEEEEESTTTSSCGGG-CEEEEEESCHHHHHHHHHH--HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecchhhcCCCCc-eEEEEEeCCHHHHHHHHHH--HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 356 569999998 898 9999998 68888877532 3346788999998888876432 1 4466677777
Q ss_pred HHHHHHHHHHHHhhCCCceEEEec-cceeEEEEeccCCC---chhHHHHHHHHHHc-CceeccCC------CCEEEEecC
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTAL---PVSAYDICLKMKER-GILAKPTH------DTIVRLTPP 422 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~-~g~~~~~~~~~~~~---~~~~~~~~~~l~~~-Gv~~~~~~------~~~iR~~~~ 422 (470)
++++.+.|++++ +...++ .|.|+++.+..... .....++++.|+++ ||.+.++. ++++|++++
T Consensus 333 ~~~l~~~L~~~g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~ 406 (428)
T 1iay_A 333 HKHFTNGLEVVG------IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA 406 (428)
T ss_dssp HHHHHHHHHHTT------CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS
T ss_pred HHHHHHHHHhcC------CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe
Confidence 888888877652 222344 56677776643110 01456789999987 99998753 579999987
Q ss_pred CCCCHHHHHHHHHHHHHHHhccc
Q 012138 423 LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 423 ~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.++++++++++++|+++++ +.
T Consensus 407 -~~~~e~i~~~~~~l~~~l~-~~ 427 (428)
T 1iay_A 407 -NMDDGTVDIALARIRRFVG-VE 427 (428)
T ss_dssp -SSCHHHHHHHHHHHHHHHH-TT
T ss_pred -cCCHHHHHHHHHHHHHHHh-cc
Confidence 5899999999999999987 53
No 97
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.97 E-value=2.7e-30 Score=257.96 Aligned_cols=335 Identities=12% Similarity=0.042 Sum_probs=218.9
Q ss_pred EEeCCCCeEEeccCCcccccCC--CCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhh--------CCCeEEe
Q 012138 69 IWDPEGNKYLDFLSAYSAVNQG--HCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMF--------GYDMVLP 137 (470)
Q Consensus 69 ~~d~~G~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~--------~~~~v~~ 137 (470)
+.+..|+.+|||.+|....+.+ +.+|.+.+++.++++.... ..| ......++++.+++++ ..++|++
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 97 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT--KNYLGIDGIPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc--cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence 3333467899999997544555 5679999999988865311 112 2223455555555554 2567888
Q ss_pred --cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC---C---
Q 012138 138 --MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF---G--- 209 (470)
Q Consensus 138 --~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 209 (470)
|+||++|++.+++++..+. +|+ .|++..++||+........+.. ...++. +
T Consensus 98 ~~~~g~~~a~~~~~~~~~~~~-------~gd-~Vl~~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~ 156 (396)
T 2q7w_A 98 AQTPGGTGALRVAADFLAKNT-------SVK-RVWVSNPSWPNHKSVFNSAGLE-------------VREYAYYDAENHT 156 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHHS-------CCC-EEEEEESCCTHHHHHHHHTTCE-------------EEEEECEETTTTE
T ss_pred EecccchhhHHHHHHHHHHhC-------CCC-EEEEcCCCchhHHHHHHHcCCc-------------eEEEecccCCCCC
Confidence 9999999999998775321 344 7888999999876554433321 122222 1
Q ss_pred -CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC--CccccccCCCCc
Q 012138 210 -DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG--RMLASDWEEVRP 286 (470)
Q Consensus 210 -d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G--~~~~~~~~~~~p 286 (470)
|+++|++++++...+++++++..++||||.++ +.+++++|.++|++||++||+||+|++|++.| ..+.+..+...+
T Consensus 157 ~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 235 (396)
T 2q7w_A 157 LDFDALINSLNEAQAGDVVLFHGCCHNPTGIDP-TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMH 235 (396)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHC
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcC
Confidence 89999999976433467777666699999998 89999999999999999999999999887654 222222121111
Q ss_pred c----eeecccccc-CCCcceeEEEe---cH----HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH------hh--hhH
Q 012138 287 D----MVILGKALG-GGVIPVSAVLA---DK----EVMLCIQPGEHGSTFGGNPLASAVAIASLDVI------RD--EKL 346 (470)
Q Consensus 287 d----i~s~sK~l~-gG~~~ig~v~~---~~----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~------~~--~~~ 346 (470)
| +.|+||.++ +|+ |+|++++ ++ ++++.+.........+.++++++++.++|+.. .+ +.+
T Consensus 236 ~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~ 314 (396)
T 2q7w_A 236 KELIVASSYSXNFGLYNE-RVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDM 314 (396)
T ss_dssp SCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC
T ss_pred CcEEEEEecccccccccc-ccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 2 458999999 898 9999997 55 45544432222222335888998888887643 11 345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCC
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSIS 426 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t 426 (470)
.++++++++++.+.|+++... ..+....+.+.++.| +.. ....+.+.|.++||.+.++ +||+++. .+
T Consensus 315 ~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~gv~v~~~----~Ris~~~-~~ 381 (396)
T 2q7w_A 315 RQRIQRMRQLFVNTLQEKGAN--RDFSFIIKQNGMFSF-SGL-----TKEQVLRLREEFGVYAVAS----GRVNVAG-MT 381 (396)
T ss_dssp -CHHHHHHHHHHHHHHHTTCC--SCCTHHHHCCSSEEE-CCC-----CHHHHHHHHHHHCEECCTT----CEEEGGG-CC
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CCcceecCCCceEEE-ecC-----CHHHHHHHHHhcCeeecCC----ceEEEee-cC
Confidence 556677777777777765310 012222345555554 222 2345666777889999875 6999874 38
Q ss_pred HHHHHHHHHHHHHHH
Q 012138 427 SNELQEGSKALHDVL 441 (470)
Q Consensus 427 ~e~i~~~~~~l~~~l 441 (470)
++++++++++|++++
T Consensus 382 ~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 382 PDNMAPLCEAIVAVL 396 (396)
T ss_dssp TTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998864
No 98
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=2.9e-29 Score=250.94 Aligned_cols=318 Identities=15% Similarity=0.149 Sum_probs=224.0
Q ss_pred CCCHHHHHHHHHHHHHccccCCCC-------CCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 91 HCHPKIMKALQEQAEKLTLSSRAF-------YNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
+.+|++.+++.++++.....+..+ ..+...++++.++++++. +.+++++||++|++.+++.++++. .
T Consensus 34 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~-~-- 110 (406)
T 1kmj_A 34 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN-V-- 110 (406)
T ss_dssp CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH-C--
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc-C--
Confidence 578999999999998753211111 134467899999999886 679999999999999999874210 0
Q ss_pred cCCCCCcEEEEEccCccccccch---hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCC
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAA---ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEA 237 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~ 237 (470)
.+|+ .|++..++||+..... ....+..... .+...+ ..+ |+++|++++++ ++++|++++++||+
T Consensus 111 --~~gd-~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~-~~~---d~~~l~~~l~~---~~~~v~~~~~~npt 177 (406)
T 1kmj_A 111 --RAGD-NIIISQMEHHANIVPWQMLCARVGAELRV---IPLNPD-GTL---QLETLPTLFDE---KTRLLAITHVSNVL 177 (406)
T ss_dssp --CTTC-EEEEETTCCGGGTHHHHHHHHHHTCEEEE---ECBCTT-SCB---CGGGHHHHCCT---TEEEEEEESBCTTT
T ss_pred --CCCC-EEEEecccchHHHHHHHHHHHhCCCEEEE---EecCCC-CCc---CHHHHHHHhcc---CCeEEEEeCCCccc
Confidence 1344 8888999998765332 1111211110 111111 111 78999998875 78999999999999
Q ss_pred ccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhc
Q 012138 238 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCI 315 (470)
Q Consensus 238 G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~ 315 (470)
|.+.| +++|.++|++||++||+||+|+.. .. .+..... .+|++ +++|.++ +. .+|++++++++++.+
T Consensus 178 G~~~~----l~~i~~l~~~~~~~li~D~~~~~g-~~--~~~~~~~--~~d~~~~s~~K~~g-~~-G~G~~~~~~~~~~~~ 246 (406)
T 1kmj_A 178 GTENP----LAEMITLAHQHGAKVLVDGAQAVM-HH--PVDVQAL--DCDFYVFSGHKLYG-PT-GIGILYVKEALLQEM 246 (406)
T ss_dssp CCBCC----HHHHHHHHHHTTCEEEEECTTTTT-TS--CCCHHHH--TCSEEEEEGGGTTS-CT-TCEEEEECHHHHHHC
T ss_pred cCcCC----HHHHHHHHHHcCCEEEEEchhhcC-CC--CCccccc--CCCEEEEEchhccC-CC-CcEEEEEeHHHHhhc
Confidence 99997 999999999999999999999832 22 1112222 35664 7999884 32 479999999999888
Q ss_pred CcCCccC---------------------CCCCCHHHHHHHH-HHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCC
Q 012138 316 QPGEHGS---------------------TFGGNPLASAVAI-ASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPN 370 (470)
Q Consensus 316 ~~~~~~~---------------------t~~~~~~~~aaa~-a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~ 370 (470)
.+...+. ..+.+++.++++. ++++.+.+ +.+.++.+++++++.+.|+++ |
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~- 321 (406)
T 1kmj_A 247 PPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV----P- 321 (406)
T ss_dssp CCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS----T-
T ss_pred CCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC----C-
Confidence 7544321 1233445555444 77887754 356677777788887777653 2
Q ss_pred ceEEEec--cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------------CCEEEEecCCCCCHHHHHHHHHH
Q 012138 371 YVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------DTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 371 ~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
.+....+ .|.++.|.+.. .+..++.+.|.++||.+.++. ++++||+++..+|++++++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~ 397 (406)
T 1kmj_A 322 DLTLYGPQNRLGVIAFNLGK----HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTG 397 (406)
T ss_dssp TEEEESCTTCCSEEEEEETT----CCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHH
T ss_pred CeEEecCCCcCCEEEEEECC----CCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHH
Confidence 3444455 78888887642 256788999999999987653 58999999998999999999999
Q ss_pred HHHHHhccc
Q 012138 437 LHDVLELDL 445 (470)
Q Consensus 437 l~~~l~~~~ 445 (470)
|+++++ .+
T Consensus 398 l~~~~~-~l 405 (406)
T 1kmj_A 398 LQRIHR-LL 405 (406)
T ss_dssp HHHHHH-HH
T ss_pred HHHHHH-hh
Confidence 999987 54
No 99
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.97 E-value=1e-29 Score=255.86 Aligned_cols=341 Identities=11% Similarity=0.075 Sum_probs=231.3
Q ss_pred CCeEEeccCCccccc--CCCCCHHHHHHHHHHHHH--ccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHH
Q 012138 74 GNKYLDFLSAYSAVN--QGHCHPKIMKALQEQAEK--LTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVE 146 (470)
Q Consensus 74 G~~~lD~~~~~~~~~--lG~~~p~v~~a~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~ 146 (470)
|+.++||..|..... .-..++.+.+++.+.... ..+.+.....++++++++++....+.+ ++++|+||++|+.
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~ 116 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIH 116 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHH
Confidence 445677777643111 112567888877664432 122222223445666666666656677 9999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc--CCC
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES--GDQ 224 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~--~~~ 224 (470)
.+++.+.. +|+ .|++..++|++........+..... .+..++...+ |+++|++++++. ...
T Consensus 117 ~~~~~l~~---------~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~----v~~~~~~~~~---d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 117 HLIHNYTE---------PGD-EVLTADWYWGAYRVICSDTGRTLVT----YSLFDEHNNF---NHEAFQNRVNELAAKQT 179 (418)
T ss_dssp HHHHHHSC---------TTC-EEEEESSCCTHHHHHHHHTTCEEEE----ECSBCTTSSB---CHHHHHHHHHHHHHHCS
T ss_pred HHHHHhcC---------CCC-EEEECCCCchhHHHHHHHcCCEEEE----EeeeCCCCCc---CHHHHHHHHHHhhccCC
Confidence 99997754 455 7888999987765544333322111 1110111122 899999999752 013
Q ss_pred eEEEEEccc-cCCCccccCChhhHHHHHHHHH------hcCcEEEEeccccCCcccCCc---cccccCCCCcc---ee--
Q 012138 225 IAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCS------KYNILMIADEIQSGLARSGRM---LASDWEEVRPD---MV-- 289 (470)
Q Consensus 225 ~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~------~~gillI~Dev~~g~g~~G~~---~~~~~~~~~pd---i~-- 289 (470)
.++++++.+ +||+|.++ +.+.+++|+++|+ +||++||+||+|.+|++.|.. +.....++.++ ++
T Consensus 180 ~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 258 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCY 258 (418)
T ss_dssp EEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEE
Confidence 346777755 99999999 8888999999999 899999999999998876642 22233445555 22
Q ss_pred ecccccc-CCCcceeEEEe---cHHHHhhcCcCCc----cCCCCCCHHHHHHHHHHHHHH------hh--hhHHHHHHHH
Q 012138 290 ILGKALG-GGVIPVSAVLA---DKEVMLCIQPGEH----GSTFGGNPLASAVAIASLDVI------RD--EKLAERSAHL 353 (470)
Q Consensus 290 s~sK~l~-gG~~~ig~v~~---~~~~~~~~~~~~~----~~t~~~~~~~~aaa~a~l~~~------~~--~~~~~~~~~~ 353 (470)
||||.++ +|+ |+|++++ ++++++.+..... +...+.+.++++++.++++.. .+ ..++++++++
T Consensus 259 S~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (418)
T 3rq1_A 259 SLSKGFTMYGQ-RVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDR 337 (418)
T ss_dssp ESTTTTTCCSS-CCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCcCcCC-cceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998 798 9999998 8999888764321 122347888888887777432 11 2455677777
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHH
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~ 433 (470)
++++.+.|++++ +....+.|.++.| ++.. +..++++.|.++||.+.|+ .+++||++. .+++++++++
T Consensus 338 ~~~l~~~L~~~g------~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~~gi~v~~g-~~~iRis~~-~~~~~~i~~~ 404 (418)
T 3rq1_A 338 ADIFKQEAAQVG------LPMLPYRGGFFIT-IPTD----SANAICEELKKEHIYVIAL-ANGIRIAAC-GIPKCQMTGL 404 (418)
T ss_dssp HHHHHHHHHHHT------CCCCCCCSSSEEE-EECT----THHHHHHHHHHTTEECEEC-SSEEEEEGG-GSCHHHHTTH
T ss_pred HHHHHHHHHhcC------CCCCCCCceEEEE-cCCC----CHHHHHHHHHhCCEEEecC-CCCeEEEEe-cCCHHHHHHH
Confidence 888888887762 2223456666555 3222 5678999999999999987 578999954 4699999999
Q ss_pred HHHHHHHHhcccCC
Q 012138 434 SKALHDVLELDLPK 447 (470)
Q Consensus 434 ~~~l~~~l~~~~~~ 447 (470)
+++|+++++ ++.+
T Consensus 405 ~~~l~~~l~-~~~~ 417 (418)
T 3rq1_A 405 AEKIYNAMK-SLGK 417 (418)
T ss_dssp HHHHHHHHH-HTTC
T ss_pred HHHHHHHHH-HHhc
Confidence 999999998 7654
No 100
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.97 E-value=1.1e-29 Score=255.15 Aligned_cols=340 Identities=11% Similarity=0.094 Sum_probs=226.9
Q ss_pred CCeEEeccCCcccccCCC--CCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhh-C-------CCeEEe--cCC
Q 012138 74 GNKYLDFLSAYSAVNQGH--CHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMF-G-------YDMVLP--MNT 140 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~-~-------~~~v~~--~~s 140 (470)
|+.++||..+....+.++ .+|.+.+++.++++..... ..| ......++++.+++++ + .++|++ |+|
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g 107 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN-HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG 107 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhc-cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence 566889988864333433 4589999998887321111 112 2223455666666555 2 378999 999
Q ss_pred hhHHHHHHHHHHHHhchhcccCCCCC----cEEEEEccCccccccchhcccCC-cccccCCCCCC-CCeeeecCCCHHHH
Q 012138 141 GAEGVETALKLARKWGYVKKKFSIDE----AIIVSCCGCFHGRTLAAISMSCD-NEAIRGFGPLL-PGHLKVDFGDITAL 214 (470)
Q Consensus 141 GteA~~~al~~~~~~~~~~~~~~~g~----~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~~L 214 (470)
|++|++.+++++..+. +|+ +.|++..++||+........+.. ... . +.. ++...+ |+++|
T Consensus 108 g~~a~~~~~~~~~~~~-------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~-~---~~~~~~~~~~---d~~~l 173 (412)
T 1ajs_A 108 GTGALRIGAEFLARWY-------NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRS-Y---RYWDTEKRGL---DLQGF 173 (412)
T ss_dssp HHHHHHHHHHHHHHHS-------SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEE-E---ECEETTTTEE---CHHHH
T ss_pred cHHHHHHHHHHHHHhC-------cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEE-E---eeecCCCCcc---CHHHH
Confidence 9999999987554321 341 47888999998876554443322 111 0 000 011122 89999
Q ss_pred HHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC---CccccccCCCCcc----
Q 012138 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG---RMLASDWEEVRPD---- 287 (470)
Q Consensus 215 e~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G---~~~~~~~~~~~pd---- 287 (470)
++++++++.+++++++..++||+|.++ +.+++++|.++|++||++||+||+|++|++.| ..+.+..+...+|
T Consensus 174 ~~~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (412)
T 1ajs_A 174 LSDLENAPEFSIFVLHACAHNPTGTDP-TPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFC 252 (412)
T ss_dssp HHHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHhCCCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEE
Confidence 999987544677776566699999998 89999999999999999999999999998775 3333332211223
Q ss_pred eeeccccccC-CCcceeEEEe---cHHH----HhhcCcCCccCCCC-CCHHHHHHHHHHHHHHh--------hhhHHHHH
Q 012138 288 MVILGKALGG-GVIPVSAVLA---DKEV----MLCIQPGEHGSTFG-GNPLASAVAIASLDVIR--------DEKLAERS 350 (470)
Q Consensus 288 i~s~sK~l~g-G~~~ig~v~~---~~~~----~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~--------~~~~~~~~ 350 (470)
+.+|||.+++ |+ |+|++++ ++++ ++.+... +..+++ .++++++++.++|+... .+++.+++
T Consensus 253 ~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (412)
T 1ajs_A 253 AQSFSKNFGLYNE-RVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRI 330 (412)
T ss_dssp EEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccCCCCc-ceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHH
Confidence 5599999996 98 9999999 8874 3333321 334555 58899999888887542 15577778
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHH
Q 012138 351 AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNEL 430 (470)
Q Consensus 351 ~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i 430 (470)
+++++++.+.|+++.. |..+....+.+.++.| +.. +...+...|.++||++.++ +|++++. .+++++
T Consensus 331 ~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~gv~v~~~----~Ris~~~-~~~~~i 397 (412)
T 1ajs_A 331 LSMRSELRARLEALKT--PGTWNHITDQIGMFSF-TGL-----NPKQVEYLINQKHIYLLPS----GRINMCG-LTTKNL 397 (412)
T ss_dssp HHHHHHHHHHHHHTTC--SSCCHHHHHCCSSEEE-CCC-----CHHHHHHHHHTTCEECCTT----SEEEGGG-CCTTTH
T ss_pred HHHHHHHHHHHHhhCC--CCCeeEEcCCCceEEE-eCC-----CHHHHHHHHHhCCEEecCC----cEEEeee-CCHHHH
Confidence 8888888888877531 0012222455555555 222 2344555566789999875 5999763 589999
Q ss_pred HHHHHHHHHHHhccc
Q 012138 431 QEGSKALHDVLELDL 445 (470)
Q Consensus 431 ~~~~~~l~~~l~~~~ 445 (470)
++++++|+++++ ++
T Consensus 398 ~~~~~~l~~~l~-~~ 411 (412)
T 1ajs_A 398 DYVATSIHEAVT-KI 411 (412)
T ss_dssp HHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHH-hc
Confidence 999999999998 64
No 101
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.97 E-value=4.8e-29 Score=251.53 Aligned_cols=301 Identities=12% Similarity=0.098 Sum_probs=213.7
Q ss_pred CCCCcHHHHHHHHhhhhCC-----------CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc
Q 012138 114 FYNDKFPVFAERLTSMFGY-----------DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA 182 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~-----------~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~ 182 (470)
.+.++++++++++.+.+|. ++|++|+|+++|+..+++++.. +|+ .|++..++|++....
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~---------~gd-~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN---------PGD-NVLLDEPAYSGTLQS 148 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC---------CCC-EEEEeCCCcHHHHHH
Confidence 3456677788887776652 4799999999999999998754 454 888999999876544
Q ss_pred hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC---------CCeEEEEEcc-ccCCCccccCChhhHHHHHH
Q 012138 183 AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---------DQIAGFLFEP-IQGEAGVIIPPDGYLKAVRD 252 (470)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~---------~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~ 252 (470)
....+. ..... +...+ .+ |+++|+++++++. .++++|+++| ++||||.++ +.+++++|.+
T Consensus 149 ~~~~g~-~~~~v---~~~~~--~~---d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~ 218 (425)
T 2r2n_A 149 LHPLGC-NIINV---ASDES--GI---VPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSL-TSERKKEIYE 218 (425)
T ss_dssp HGGGTC-EEEEE---CEETT--EE---CHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCC-CHHHHHHHHH
T ss_pred HHHcCC-EEEEe---CcCCC--CC---CHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcC-CHHHHHHHHH
Confidence 332221 11100 11010 12 8999999997421 3578887754 799999999 8999999999
Q ss_pred HHHhcCcEEEEeccccCCcccCCc----cccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCH
Q 012138 253 LCSKYNILMIADEIQSGLARSGRM----LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNP 328 (470)
Q Consensus 253 l~~~~gillI~Dev~~g~g~~G~~----~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~ 328 (470)
+|++||++||+||+|+++.+.|.. ..++..+....+.+|||.+++|+ |+||+++++++++.+.......+++.++
T Consensus 219 ~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~Gl-RiG~~~~~~~l~~~l~~~~~~~~~~~~~ 297 (425)
T 2r2n_A 219 LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGL-RIGFLTGPKPLIERVILHIQVSTLHPST 297 (425)
T ss_dssp HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTT-CCEEEEEEHHHHHHHHHHHHTTTCSSCH
T ss_pred HHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCcc-ceEEEecCHHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999987666542 22222233345669999999998 9999999999998887655566788999
Q ss_pred HHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHH-HH
Q 012138 329 LASAVAIASLDVIRD-------EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYD-IC 399 (470)
Q Consensus 329 ~~~aaa~a~l~~~~~-------~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~-~~ 399 (470)
++++++.++|+.+.+ +.++++++++++++.+.|++. +|+..... +..|.++++.+.... +..+ +.
T Consensus 298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~p~~g~~~~~~~~~~~---~~~~~~~ 371 (425)
T 2r2n_A 298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW---LTGLAEWHVPAAGMFLWIKVKGIN---DVKELIE 371 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSSEEECCCSBSSEEEEEETTCS---CCHHHHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEeCCCceEEEEEEeCCCC---CHHHHHH
Confidence 999999988886432 223444455555555555542 33222222 345666667665422 3344 57
Q ss_pred HHHHHcCceeccCC---------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 400 LKMKERGILAKPTH---------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 400 ~~l~~~Gv~~~~~~---------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.|.++||.+.|+. .+++||+++. .+++++++++++|.++++
T Consensus 372 ~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~ 422 (425)
T 2r2n_A 372 EKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIK 422 (425)
T ss_dssp THHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 88889999998652 4799999763 699999999999999987
No 102
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.97 E-value=1.4e-29 Score=250.35 Aligned_cols=319 Identities=15% Similarity=0.158 Sum_probs=231.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---c----cCCCCCCCcHHHHHHH-HhhhhCCCeEEecCChhHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---L----SSRAFYNDKFPVFAER-LTSMFGYDMVLPMNTGAEGVE 146 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~----~~~~~~~~~~~~l~~~-l~~~~~~~~v~~~~sGteA~~ 146 (470)
-.|+|+.. +.++.+|++.+++.+++.... + .......+...+++++ ++++++.+.+++++||++|++
T Consensus 9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKF 83 (371)
T ss_dssp CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHH
T ss_pred cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHH
Confidence 34566532 245578999999999886542 1 1112345678899999 999998779999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeec--CC-----CHHHHHHHHH
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--FG-----DITALEKIFK 219 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----d~~~Le~~l~ 219 (470)
.+++.+.. +|+ .|++..++|++...... ..+.. +..++ ++ |+++|+++++
T Consensus 84 ~~~~~~~~---------~gd-~vl~~~~~~~~~~~~~~-~~g~~------------~~~v~~~~~~~~~~d~~~l~~~l~ 140 (371)
T 2e7j_A 84 AVMHSLAK---------KDA-WVVMDENCHYSSYVAAE-RAGLN------------IALVPKTDYPDYAITPENFAQTIE 140 (371)
T ss_dssp HHHHHHCC---------TTC-EEEEETTCCHHHHHHHH-HTTCE------------EEEECCCCTTTCCCCHHHHHHHHH
T ss_pred HHHHHHhC---------CCC-EEEEccCcchHHHHHHH-HcCCe------------EEEeecccCCCCCcCHHHHHHHHH
Confidence 99998743 344 88899999887655432 22211 12233 22 8999999998
Q ss_pred hcC--CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccc
Q 012138 220 ESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKAL 295 (470)
Q Consensus 220 ~~~--~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l 295 (470)
++. +++++|++++++||+|.+.| +++|.++|++||++||+||+|+.+. .+ +....++ +|++ +++|++
T Consensus 141 ~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~-~~--~~~~~~~--~di~~~s~sK~~ 211 (371)
T 2e7j_A 141 ETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIGR-MP--VSLKEIG--ADFIVGSGHKSM 211 (371)
T ss_dssp HHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBTT-BC--CCHHHHT--CSEEEEEHHHHS
T ss_pred hhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccCC-CC--CChhhcC--CCEEEecCCcCC
Confidence 432 37889998888999999997 8999999999999999999998532 21 1222233 4554 779999
Q ss_pred cCCCcceeEEEecHHHHhh-cCcCCc--cC-----CCCCCHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHH
Q 012138 296 GGGVIPVSAVLADKEVMLC-IQPGEH--GS-----TFGGNPLASAVAIASLDVIRDEKLAERS--AHLGEELRQHLFKIQ 365 (470)
Q Consensus 296 ~gG~~~ig~v~~~~~~~~~-~~~~~~--~~-----t~~~~~~~~aaa~a~l~~~~~~~~~~~~--~~~~~~l~~~L~~l~ 365 (470)
++|. ++|++++++++++. +..... .. +++.++.+++++.++++.+.+ .+.+++ +++++++.+.|+++
T Consensus 212 ~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~- 288 (371)
T 2e7j_A 212 AASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL- 288 (371)
T ss_dssp SCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT-
T ss_pred CCCC-CcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc-
Confidence 9887 99999999998887 765433 22 456788888888888887765 667777 88888898888775
Q ss_pred hhCCCceEEEec---cceeEEEEeccCCCchhHHHHHHHHHHcCceecc--------C-CCCEEE-EecCCC-CCHHHHH
Q 012138 366 QQFPNYVKEVRG---RGLFNAVEFDKTALPVSAYDICLKMKERGILAKP--------T-HDTIVR-LTPPLS-ISSNELQ 431 (470)
Q Consensus 366 ~~~p~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~--------~-~~~~iR-~~~~~~-~t~e~i~ 431 (470)
. +....+ .+.++++.+. +..++.+.|.++||.+.| + ..+++| ++++.. +++++++
T Consensus 289 -~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~ 357 (371)
T 2e7j_A 289 -G----IKQLGDNPHNHDLMFFHAE------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVD 357 (371)
T ss_dssp -T----CEEESSSSCCSSEEEEECH------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHH
T ss_pred -C----cEEecCCCccCceEEEECC------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHH
Confidence 1 222222 4677777653 466789999988999876 1 157899 998877 8999999
Q ss_pred HHHHHHHHHHhccc
Q 012138 432 EGSKALHDVLELDL 445 (470)
Q Consensus 432 ~~~~~l~~~l~~~~ 445 (470)
+++++|+++++ ++
T Consensus 358 ~~~~~l~~~~~-~~ 370 (371)
T 2e7j_A 358 YVLNAFKEIIE-KY 370 (371)
T ss_dssp HHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHH-hc
Confidence 99999999987 64
No 103
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.97 E-value=4.5e-29 Score=250.93 Aligned_cols=340 Identities=12% Similarity=0.103 Sum_probs=224.7
Q ss_pred CeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHccccCCCCC-CCcHHHHHHHHhhhhC--------------CCeEEec
Q 012138 75 NKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMFG--------------YDMVLPM 138 (470)
Q Consensus 75 ~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~--------------~~~v~~~ 138 (470)
+.++||..+.+.. +....+|++.+++.++++..... .|. .....++++.++++++ .++|+++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~--~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~ 110 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECN--GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC 110 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSS--SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccC--CcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEe
Confidence 4578998875432 23457899999999998753211 111 1123444444444433 5689999
Q ss_pred CChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHH
Q 012138 139 NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKI 217 (470)
Q Consensus 139 ~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~ 217 (470)
+||++|++.+++++.. +|+ .|++..++||+........+.. ... .+..++ ...+ |+++|+++
T Consensus 111 ~g~~~al~~~~~~l~~---------~gd-~vl~~~p~y~~~~~~~~~~g~~-~~~---v~~~~~~~~~~---d~~~l~~~ 173 (416)
T 1bw0_A 111 SGGSHGILMAITAICD---------AGD-YALVPQPGFPHYETVCKAYGIG-MHF---YNCRPENDWEA---DLDEIRRL 173 (416)
T ss_dssp SHHHHHHHHHHHHHCC---------TTC-EEEEEESCCTHHHHHHHHTTCE-EEE---EEEEGGGTTEE---CHHHHHHH
T ss_pred CChHHHHHHHHHHhCC---------CCC-EEEEcCCCcHhHHHHHHHcCcE-EEE---eecCcccCCCC---CHHHHHHH
Confidence 9999999999998743 454 8888999998865443322221 110 000000 0112 89999998
Q ss_pred HHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC----cc-ccccCCCCc---cee
Q 012138 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR----ML-ASDWEEVRP---DMV 289 (470)
Q Consensus 218 l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~----~~-~~~~~~~~p---di~ 289 (470)
+++ +++++++..++||+|.++ +++++++|.++|++||++||+||+|+++.+.|. .+ ....++..+ .+.
T Consensus 174 l~~---~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 249 (416)
T 1bw0_A 174 KDD---KTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILG 249 (416)
T ss_dssp CCT---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEE
T ss_pred hcc---CCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEe
Confidence 875 567666443499999998 899999999999999999999999998876664 22 222222221 234
Q ss_pred ecccccc-CCCcceeEEEecHH--HHhhcCcC---CccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHH
Q 012138 290 ILGKALG-GGVIPVSAVLADKE--VMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQH 360 (470)
Q Consensus 290 s~sK~l~-gG~~~ig~v~~~~~--~~~~~~~~---~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~ 360 (470)
++||.++ +|+ |+|+++++++ +++.+... ....+++.++++++++.++|+.+.+ +++.++++++++++.+.
T Consensus 250 s~sK~~~~~Gl-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (416)
T 1bw0_A 250 GTAKNLVVPGW-RLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNH 328 (416)
T ss_dssp ESTTTTSCGGG-CCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhCCCCCc-eEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 8999976 788 9999998663 33333211 1124667899999999888874322 34556666666667666
Q ss_pred HHHHHhhCCCceEEEecc-ceeEEEEeccCCC--chhHHHHHHHHH-HcCceeccCC----CCEEEEecCCCCCHHHHHH
Q 012138 361 LFKIQQQFPNYVKEVRGR-GLFNAVEFDKTAL--PVSAYDICLKMK-ERGILAKPTH----DTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 361 L~~l~~~~p~~~~~~~~~-g~~~~~~~~~~~~--~~~~~~~~~~l~-~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~ 432 (470)
|++ +| .+....+. |.++++.++.... ..+..++++.|. ++||.+.++. ++++|+++ ..+++++++
T Consensus 329 L~~----~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~ 401 (416)
T 1bw0_A 329 IGE----CI-GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYRE 401 (416)
T ss_dssp HTT----ST-TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHH
T ss_pred HHh----CC-CCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHHHHHH
Confidence 654 33 34444444 6666666642100 025678888885 7899998763 67999996 478999999
Q ss_pred HHHHHHHHHhcccC
Q 012138 433 GSKALHDVLELDLP 446 (470)
Q Consensus 433 ~~~~l~~~l~~~~~ 446 (470)
++++|.++++ +.+
T Consensus 402 ~l~~l~~~l~-~~~ 414 (416)
T 1bw0_A 402 AVERIKAFCQ-RHA 414 (416)
T ss_dssp HHHHHHHHHH-HHB
T ss_pred HHHHHHHHHH-Hhh
Confidence 9999999998 654
No 104
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.97 E-value=2.7e-29 Score=250.63 Aligned_cols=329 Identities=14% Similarity=0.073 Sum_probs=223.5
Q ss_pred CCeEEeccCCcccccCC--CCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhh-----CCCeEEe--cCChhH
Q 012138 74 GNKYLDFLSAYSAVNQG--HCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMF-----GYDMVLP--MNTGAE 143 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~-----~~~~v~~--~~sGte 143 (470)
+..++||..+....+.+ +.+|.+.+++.++++.... ..| ......++++.+++++ ..++|++ |+||++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~ 102 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT--KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTG 102 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC--CCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCccc--CCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchh
Confidence 45678999886544444 5789999999988765211 112 1223456666666654 3468998 999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC---C----CHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF---G----DITALEK 216 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----d~~~Le~ 216 (470)
|++.+++++..+. +|+ .|++..++||+........+... ..++. + |+++|++
T Consensus 103 a~~~~~~~~~~~~-------~gd-~vl~~~p~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~~~d~~~l~~ 161 (394)
T 2ay1_A 103 ALRQALELARMAN-------PDL-RVFVSDPTWPNHVSIMNFMGLPV-------------QTYRYFDAETRGVDFEGMKA 161 (394)
T ss_dssp HHHHHHHHHHHHC-------TTC-CEEEEESCCHHHHHHHHHHTCCE-------------EEEECEETTTTEECHHHHHH
T ss_pred HHHHHHHHHHhcC-------CCC-EEEEcCCCChhHHHHHHHcCCce-------------EEEecccccCCccCHHHHHH
Confidence 9999999876431 344 68888999998765544433221 12222 1 8999999
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC--CccccccC-CCCcc---eee
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG--RMLASDWE-EVRPD---MVI 290 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G--~~~~~~~~-~~~pd---i~s 290 (470)
++++++.++++++++.++||||.++ +.+++++|.++|++||+++|+||+|++|++.| ....+..+ ...++ +.|
T Consensus 162 ~l~~~~~~~~~~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 240 (394)
T 2ay1_A 162 DLAAAKKGDMVLLHGCCHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 240 (394)
T ss_dssp HHHTCCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEe
Confidence 9986433467777677799999998 89999999999999999999999999887654 22112211 11223 348
Q ss_pred cccccc-CCCcceeEEEe---cHHHHhhcCcC---CccCCCC-CCHHHHHHHHHHHHHH------h--hhhHHHHHHHHH
Q 012138 291 LGKALG-GGVIPVSAVLA---DKEVMLCIQPG---EHGSTFG-GNPLASAVAIASLDVI------R--DEKLAERSAHLG 354 (470)
Q Consensus 291 ~sK~l~-gG~~~ig~v~~---~~~~~~~~~~~---~~~~t~~-~~~~~~aaa~a~l~~~------~--~~~~~~~~~~~~ 354 (470)
+||.++ +|+ |+|++++ ++++++.+... ....+++ .++++++++.++|+.. . .+.+.+++++++
T Consensus 241 ~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 319 (394)
T 2ay1_A 241 CSKNFGIYRE-RTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLR 319 (394)
T ss_dssp CTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcCcCC-ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 898 9999998 67654433211 1123343 5888888888888643 1 145677778888
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+++.+.|+++.... .+....+.+.++.| +.. ....+.+.|.++||.+.++ +||+++ .++++++++++
T Consensus 320 ~~l~~~L~~~~~~~--~~~~~~~~~g~~~~-~~~-----~~~~~~~~l~~~gi~v~~~----~Ris~~-~~~~~~i~~~~ 386 (394)
T 2ay1_A 320 EQLAGELRDLSGSD--RFGFVAEHRGMFSR-LGA-----TPEQVKRIKEEFGIYMVGD----SRINIA-GLNDNTIPILA 386 (394)
T ss_dssp HHHHHHHHHHHTSS--TTTHHHHCCSSEEE-CCC-----CHHHHHHHHHHHCEECCTT----CEEEGG-GCCTTTHHHHH
T ss_pred HHHHHHHHhcCCCC--CeeEEcCCceEEEe-eCC-----CHHHHHHHHHhCCEEecCC----CeEEee-cCCHhhHHHHH
Confidence 88888888764210 12122344444444 322 2345677777889999875 699977 47999999999
Q ss_pred HHHHHH
Q 012138 435 KALHDV 440 (470)
Q Consensus 435 ~~l~~~ 440 (470)
++|+++
T Consensus 387 ~~l~~~ 392 (394)
T 2ay1_A 387 RAIIEV 392 (394)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999875
No 105
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.97 E-value=5.9e-29 Score=244.94 Aligned_cols=314 Identities=14% Similarity=0.142 Sum_probs=220.9
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~ 152 (470)
+.+|||.+|. +++|++ |.+ + +... ..|......++++.++++++. ++|++++|++++++.+++.+
T Consensus 29 ~~~i~l~~~~--~~~~~~-~~v--a----~~~~----~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~ 95 (356)
T 1fg7_A 29 NGDVWLNANE--YPTAVE-FQL--T----QQTL----NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF 95 (356)
T ss_dssp TCSEECSSCC--CSSCCC-CCC--C----CCCT----TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH
T ss_pred CceEEeeCCC--CCCCCC-HhH--h----hhhh----ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH
Confidence 4689999886 446654 555 1 1111 123333367888999988874 58999999999999999977
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEcc
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ep 232 (470)
.. +|++.|++..++|++........+... .. .+...+ ..+ |+++|+++++ ++++|+++.
T Consensus 96 ~~---------~g~d~Vl~~~p~~~~~~~~~~~~g~~~-~~---v~~~~~-~~~---d~~~l~~~i~----~~~~v~l~~ 154 (356)
T 1fg7_A 96 CE---------PGKDAILYCPPTYGMYSVSAETIGVEC-RT---VPTLDN-WQL---DLQGISDKLD----GVKVVYVCS 154 (356)
T ss_dssp CC---------TTTCEEEECSSSCTHHHHHHHHHTCEE-EE---CCCCTT-SCC---CHHHHHTSCT----TEEEEEEES
T ss_pred hC---------CCCCEEEEeCCChHHHHHHHHHcCCEE-EE---eeCCCC-CCC---CHHHHHHHhc----CCCEEEEeC
Confidence 53 452488889999988765544332211 11 111111 112 7888887774 577888666
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc-ccCCCCcceeecccccc-CCCcceeEEEecHH
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS-DWEEVRPDMVILGKALG-GGVIPVSAVLADKE 310 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~-~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~ 310 (470)
++||||.++ +.+++++|.++|+ ||+++|+||+|++|+........ +.++....+.||||.++ +|+ |+|+++++++
T Consensus 155 p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~ 231 (356)
T 1fg7_A 155 PNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGL-RCGFTLANEE 231 (356)
T ss_dssp SCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGG-CCEEEEECHH
T ss_pred CCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchh-hhEEEEeCHH
Confidence 699999999 8899999999999 99999999999987632222222 22333344669999998 898 9999999999
Q ss_pred HHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec
Q 012138 311 VMLCIQPGEHGSTFGGNPLASAVAIASLDVIR---DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 311 ~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
+++.+... ..+|+.++++++++.++|+... -+...++++++++++.+.|+++ |......++.|.++++.+.
T Consensus 232 ~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~ 305 (356)
T 1fg7_A 232 VINLLMKV--IAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI----PCVEQVFDSETNYILARFK 305 (356)
T ss_dssp HHHHHHHH--SCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEEECCCSSSEEEEEET
T ss_pred HHHHHHHh--cCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC----CCceEECCCCCeEEEEECC
Confidence 98887643 3456789999998888886432 2345566666777777777663 2123334566777777664
Q ss_pred cCCCchhHHHHHHHHHHcCceecc-CC----CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 388 KTALPVSAYDICLKMKERGILAKP-TH----DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~-~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+..+++++|.++||.+.+ +. .+++|++++ +++++++++++|+++
T Consensus 306 ------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 306 ------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp ------THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred ------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 356899999999999988 42 469999954 689999999988754
No 106
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.97 E-value=3.5e-29 Score=251.48 Aligned_cols=337 Identities=11% Similarity=0.095 Sum_probs=224.7
Q ss_pred CCeEEeccCCccccc--CCCCCHHHHHHHHHHHHH--ccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHH
Q 012138 74 GNKYLDFLSAYSAVN--QGHCHPKIMKALQEQAEK--LTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVE 146 (470)
Q Consensus 74 G~~~lD~~~~~~~~~--lG~~~p~v~~a~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~ 146 (470)
|+.+|||..+....+ ....++.+.+++.+.... ..+.......++++++++++....+.+ ++++|+||++|++
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~ 115 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIR 115 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHH
Confidence 456778887743211 122567888887664322 222222234455677777776666666 8999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~ 225 (470)
.+++.+.. +|+ .|++..++|++........+... .. .++..+...+ |+++|++++++.. .++
T Consensus 116 ~~~~~~~~---------~gd-~Vl~~~p~~~~~~~~~~~~g~~~-~~---~~~~~~~~~~---d~~~l~~~l~~~~~~~~ 178 (413)
T 3t18_A 116 SAIFSYLD---------EGD-PLICHDYYWAPYRKICEEFGRNF-KT---FEFFTDDFAF---NIDVYKEAIDEGIRDSD 178 (413)
T ss_dssp HHHHHHCC---------SSC-EEEEESSCCTHHHHHHHHHTCEE-EE---ECCBCTTSSB---CHHHHHHHHHHHHHHCS
T ss_pred HHHHHhcC---------CCC-EEEECCCCcccHHHHHHHhCCeE-EE---eeccCCCCCc---CHHHHHHHHHHHhhcCC
Confidence 99997754 455 78889999876654433322211 11 1110001122 8999999997520 123
Q ss_pred E-EEEEccc-cCCCccccCChhhHHHHHHHHH------hcCcEEEEeccccCCcccCCc---cccccCCCCcce--e---
Q 012138 226 A-GFLFEPI-QGEAGVIIPPDGYLKAVRDLCS------KYNILMIADEIQSGLARSGRM---LASDWEEVRPDM--V--- 289 (470)
Q Consensus 226 ~-~vi~epi-~n~~G~~~~~~~~l~~l~~l~~------~~gillI~Dev~~g~g~~G~~---~~~~~~~~~pdi--~--- 289 (470)
+ +++++.+ +||+|.++ +.+.+++|+++|+ +||++||+||+|.+|++.|.. +.....++.+++ +
T Consensus 179 ~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (413)
T 3t18_A 179 RIASLINSPGNNPTGYSL-SDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAF 257 (413)
T ss_dssp EEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEE
Confidence 4 6777755 99999999 8888999999999 999999999999999887753 222233444452 2
Q ss_pred ecccccc-CCCcceeEEEe---cHHHHhhcCcCCc----cCCCCCCHHHHHHHHHHHHHHh-----h--hhHHHHHHHHH
Q 012138 290 ILGKALG-GGVIPVSAVLA---DKEVMLCIQPGEH----GSTFGGNPLASAVAIASLDVIR-----D--EKLAERSAHLG 354 (470)
Q Consensus 290 s~sK~l~-gG~~~ig~v~~---~~~~~~~~~~~~~----~~t~~~~~~~~aaa~a~l~~~~-----~--~~~~~~~~~~~ 354 (470)
||||.++ +|+ |+|++++ ++++++.+..... +.....+.++++++.++++... + +.++++++++.
T Consensus 258 S~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 336 (413)
T 3t18_A 258 SMSKSHTAYGL-RSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRA 336 (413)
T ss_dssp EHHHHTTCGGG-CCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCccCCCcCc-CcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 8999999 898 9999998 8999888764321 1223478888888877665321 1 34566677777
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+++.+.|++++ +....+.|.++.| ++.. +..++++.|.++||.+.|+ ++++||+++. .+++++ +
T Consensus 337 ~~l~~~l~~~g------~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~~gv~v~~g-~~~iRis~~~-~~~~~~---l 400 (413)
T 3t18_A 337 DVFVTAAKENK------LTMIPYFGGFFTF-IPTD----KAFDIVKDLEKENIFTIPS-AKGIRVAICG-VGEEKI---P 400 (413)
T ss_dssp HHHHHHHHHTT------CCCBCCCSSSCEE-EECS----CHHHHHHHHHHTTEECEEC-SSEEEECTTT-SCGGGH---H
T ss_pred HHHHHHHHHcC------CCccCCCceEEEE-eCCC----CHHHHHHHHHhCCEEEecC-CCceEEEEee-CCHHHH---H
Confidence 77777777642 2233456666555 3322 5778899999999999987 6899999774 355555 8
Q ss_pred HHHHHHHhcccC
Q 012138 435 KALHDVLELDLP 446 (470)
Q Consensus 435 ~~l~~~l~~~~~ 446 (470)
++|.++++ +++
T Consensus 401 ~~l~~~l~-~~~ 411 (413)
T 3t18_A 401 KLVQRLAF-YTN 411 (413)
T ss_dssp HHHHHHHH-HHH
T ss_pred HHHHHHHH-HHh
Confidence 88888877 653
No 107
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=3.3e-29 Score=249.32 Aligned_cols=315 Identities=15% Similarity=0.113 Sum_probs=225.2
Q ss_pred CCCCCHHHHHHHHHHHHHccccCC----CCC--CCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHH-HHhchhc
Q 012138 89 QGHCHPKIMKALQEQAEKLTLSSR----AFY--NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLA-RKWGYVK 159 (470)
Q Consensus 89 lG~~~p~v~~a~~~~~~~~~~~~~----~~~--~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~-~~~~~~~ 159 (470)
.|+.++++.+++.++++....... .+. .+...++++.++++++.+ ++++++||++|++.+++.+ ..
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~----- 99 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWH----- 99 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCC-----
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCC-----
Confidence 466889999999999876432111 121 145678999999998765 7999999999999999877 32
Q ss_pred ccCCCCCcEEEEEccCccccccch---hcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeEEEEEccccC
Q 012138 160 KKFSIDEAIIVSCCGCFHGRTLAA---ISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQG 235 (470)
Q Consensus 160 ~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n 235 (470)
+|+ .|++..++||+..... ....+..... .+..+ +... .|+++|++++++ ++++|++++++|
T Consensus 100 ----~gd-~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~~~~---~d~~~l~~~i~~---~~~~v~~~~~~n 165 (390)
T 1elu_A 100 ----QGD-EILLTDCEHPGIIAIVQAIAARFGITYRF---FPVAATLNQG---DAAAVLANHLGP---KTRLVILSHLLW 165 (390)
T ss_dssp ----TTC-EEEEETTCCHHHHHHHHHHHHHHCCEEEE---ECCGGGSSSS---CHHHHHHTTCCT---TEEEEEEESBCT
T ss_pred ----CCC-EEEEecCcccHHHHHHHHHHHHhCcEEEE---EcCCCCCCcc---chHHHHHHhcCC---CceEEEEecccc
Confidence 344 8889999998765321 1111111110 01100 0011 168888888865 789999888899
Q ss_pred CCccccCChhhHHHHHHHHH----hcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecH
Q 012138 236 EAGVIIPPDGYLKAVRDLCS----KYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADK 309 (470)
Q Consensus 236 ~~G~~~~~~~~l~~l~~l~~----~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~ 309 (470)
|+|.+.| +++|.++|+ +||+++|+||+|+ +|... +.. ....+|++ +++|.+.||. ++|++++++
T Consensus 166 ptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~--~~~--~~~~~d~~~~s~~K~~~~~~-g~G~~~~~~ 235 (390)
T 1elu_A 166 NTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP--LDF--SRLEVDYYAFTGHKWFAGPA-GVGGLYIHG 235 (390)
T ss_dssp TTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC--CCT--TTSCCSEEEEESSSTTCCCT-TCEEEEECT
T ss_pred CCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC--CCh--hhcCCCEEEccccccccCCC-ceEEEEECH
Confidence 9999997 999999999 9999999999997 43222 112 22345766 5899888887 899999999
Q ss_pred HHHhhcCcCC----------------------ccCCCCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHH
Q 012138 310 EVMLCIQPGE----------------------HGSTFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 310 ~~~~~~~~~~----------------------~~~t~~~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~ 363 (470)
++++.+.+.. .....+.++++++++.++++.+.+. .+.++.+++++++.+.|++
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 315 (390)
T 1elu_A 236 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ 315 (390)
T ss_dssp TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9988876532 1122356778888888888876553 3667777778888877776
Q ss_pred HHhhCCCceEEE---eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 364 IQQQFPNYVKEV---RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 364 l~~~~p~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
+ | .+... ++.|.++.|.+... .+..++.+.|.++||.+.++. .+++||+++..++++++++++++|++
T Consensus 316 ~----~-g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 316 L----P-HVHCLATSAPQAGLVSFTVDSP---LGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp S----T-TEEESCSSCCSSSEEEEEECSS---SCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred c----C-CcEEecCccccccEEEEEcCCC---CCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 4 1 23333 45788888877532 257789999999999998874 68999999889999999999998865
Q ss_pred H
Q 012138 440 V 440 (470)
Q Consensus 440 ~ 440 (470)
+
T Consensus 388 ~ 388 (390)
T 1elu_A 388 F 388 (390)
T ss_dssp C
T ss_pred h
Confidence 3
No 108
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.96 E-value=7.6e-29 Score=250.55 Aligned_cols=342 Identities=11% Similarity=0.067 Sum_probs=226.0
Q ss_pred eCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCCC-CCcHHHHHHHHhhhh----C--CCeEEecCCh
Q 012138 71 DPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAFY-NDKFPVFAERLTSMF----G--YDMVLPMNTG 141 (470)
Q Consensus 71 d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~-~~~~~~l~~~l~~~~----~--~~~v~~~~sG 141 (470)
+.+|+.+|||..+. +....+|.|.+++.++++...... ..|. .....++++.+++++ + .+.|++++|+
T Consensus 52 ~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~ 128 (432)
T 3ei9_A 52 KYPDAQVISLGIGD---TTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA 128 (432)
T ss_dssp HCTTCCCEECSSCC---CCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred cCCCCCeEEccCCC---CCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCCh
Confidence 34578899999883 344589999999999998654311 1121 223456666666653 3 4679999999
Q ss_pred hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc
Q 012138 142 AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES 221 (470)
Q Consensus 142 teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~ 221 (470)
++++..+ ..+.. +|+ .|++..++|++.............+.. .......+..++.++.+.+...+++.
T Consensus 129 ~~al~~l-~~l~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (432)
T 3ei9_A 129 KCDISRL-QVMFG---------SNV-TIAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGFFPDLSTV 196 (432)
T ss_dssp HHHHHHH-HHHHC---------TTC-CEEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTTSCCGGGC
T ss_pred HHHHHHH-HHHcC---------CCC-EEEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCCcCChhhC
Confidence 9999874 43333 455 788899999876554433322111000 00000112344433211111111111
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC----CCCcceeecccccc-
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE----EVRPDMVILGKALG- 296 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~----~~~pdi~s~sK~l~- 296 (470)
.++++|+++.++||+|.++ +.+++++|+++|++||++||+||+|++|...+........ +....+.||||.++
T Consensus 197 -~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 274 (432)
T 3ei9_A 197 -GRTDIIFFCSPNNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGF 274 (432)
T ss_dssp -CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCT
T ss_pred -CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCC
Confidence 2567777555699999999 8999999999999999999999999987655443322222 22234569999998
Q ss_pred CCCcceeEEEecHHH--------HhhcCcCCccCCCCCCHHHHHHHHHHHHHH--h-hhhHHHHHHHHHHHHHHHHHHHH
Q 012138 297 GGVIPVSAVLADKEV--------MLCIQPGEHGSTFGGNPLASAVAIASLDVI--R-DEKLAERSAHLGEELRQHLFKIQ 365 (470)
Q Consensus 297 gG~~~ig~v~~~~~~--------~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~-~~~~~~~~~~~~~~l~~~L~~l~ 365 (470)
+|+ |+|++++++++ ++.+........++.++++++++.+++... + .+++.++++++.+++.+.|++++
T Consensus 275 ~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 353 (432)
T 3ei9_A 275 TGV-RLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG 353 (432)
T ss_dssp TTT-CCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccc-ceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 898 99999998887 555543333445568899998888887521 1 14567777888888888887641
Q ss_pred hhCCCceEEEec-cceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 366 QQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 366 ~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+....+ .|.++++.+. . .+..++++.|+++ ||.+.|+ +.+++||+ +..++++|++++++|
T Consensus 354 ------~~~~~~~~~~~~~~~~~-~---~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~l~~~l~rl 421 (432)
T 3ei9_A 354 ------YDVYGGKNAPYVWVHFP-N---QSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRENILEACRRF 421 (432)
T ss_dssp ------CCEEECSSSSEEEEECT-T---SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHH
T ss_pred ------ceecCCCcceEEEEECC-C---CCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHHHHHHHHHHH
Confidence 333343 5666666655 2 2577888888766 9999865 36899999 577999999999999
Q ss_pred HHHHh
Q 012138 438 HDVLE 442 (470)
Q Consensus 438 ~~~l~ 442 (470)
++--.
T Consensus 422 ~~~~~ 426 (432)
T 3ei9_A 422 KQLYK 426 (432)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 98765
No 109
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.96 E-value=1.9e-28 Score=246.25 Aligned_cols=334 Identities=14% Similarity=0.162 Sum_probs=232.1
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC----CCC---CCcHHHHHHHHhhhhCC---CeEEecCChh
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR----AFY---NDKFPVFAERLTSMFGY---DMVLPMNTGA 142 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~----~~~---~~~~~~l~~~l~~~~~~---~~v~~~~sGt 142 (470)
+|+.+++|..+.. ++.++++.+++.++++.....+. .+. .+...++++.++++++. +++++++||+
T Consensus 25 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 100 (420)
T 1t3i_A 25 NGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT 100 (420)
T ss_dssp TTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence 5677788877643 25789999999999987432111 111 23467888999999987 7899999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc---hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHH
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA---AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK 219 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~ 219 (470)
+|++.+++++.+.. . .+|+ .|++..++||+.... .....+.... +.+... ... .|+++|+++++
T Consensus 101 ~a~~~~~~~~~~~~-~----~~gd-~Vl~~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~-~~~---~d~~~l~~~l~ 167 (420)
T 1t3i_A 101 EAINLVAYSWGMNN-L----KAGD-EIITTVMEHHSNLVPWQMVAAKTGAVLK---FVQLDE-QES---FDLEHFKTLLS 167 (420)
T ss_dssp HHHHHHHHHTHHHH-C----CTTC-EEEEETTCCGGGTHHHHHHHHHHCCEEE---EECBCT-TSS---BCHHHHHHHCC
T ss_pred HHHHHHHHHhhhcc-c----CCCC-EEEECcchhHHHHHHHHHHHHhcCcEEE---EeccCC-CCC---cCHHHHHHhhC
Confidence 99999999873200 0 1344 888999999885421 1111111111 011100 011 28999999987
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG 297 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~g 297 (470)
+ ++++|++++++||+|.+.| +++|.++|++||++||+||+|+. +... +....++ +|++ +++|.++
T Consensus 168 ~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~-~~~~--~~~~~~~--~di~~~s~sK~~~- 234 (420)
T 1t3i_A 168 E---KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSA-PHYP--LDVQLID--CDWLVASGHKMCA- 234 (420)
T ss_dssp T---TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC--CCHHHHT--CSEEEEEGGGTTS-
T ss_pred C---CceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhcc-CCcc--CchhhcC--CCEEEEehhhhcC-
Confidence 5 7899998888999999997 99999999999999999999983 2211 1222233 5766 5559554
Q ss_pred CCcceeEEEecHHHHhhcCcCCccC--------------------CCCCCHHHHHHHHH-HHHHHhh---hhHHHHHHHH
Q 012138 298 GVIPVSAVLADKEVMLCIQPGEHGS--------------------TFGGNPLASAVAIA-SLDVIRD---EKLAERSAHL 353 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~~~~--------------------t~~~~~~~~aaa~a-~l~~~~~---~~~~~~~~~~ 353 (470)
+. ++|++++++++++.+.....+. ..+.+++.++++.. +++.+.+ +.+.++.+++
T Consensus 235 ~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (420)
T 1t3i_A 235 PT-GIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL 313 (420)
T ss_dssp CT-TCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CC-ceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33 5899999999998886543321 12345555555444 6777654 5577778888
Q ss_pred HHHHHHHHHHHHhhCCCceEEEec------cceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-----------C-CC
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRG------RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-----------H-DT 415 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----------~-~~ 415 (470)
++++.+.|+++ | .+....+ .|.++.|.+.. .+..++.+.|.++||.+.++ + .+
T Consensus 314 ~~~l~~~L~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~ 384 (420)
T 1t3i_A 314 THYLWQGLGQI----P-QLRLYGPNPKHGDRAALASFNVAG----LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASG 384 (420)
T ss_dssp HHHHHHHHHTC----T-TEEEESCCGGGSCBCSEEEEEETT----BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCC
T ss_pred HHHHHHHHHhC----C-CeEEeCCCccccccCCEEEEEECC----CCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCC
Confidence 88888887763 2 2333333 37888887642 25678899999999999887 2 67
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++|++++..++++++++++++|+++++ ++++
T Consensus 385 ~iRis~~~~~~~~~i~~~~~~l~~~~~-~~~~ 415 (420)
T 1t3i_A 385 SARASLYFYNTKEEIDLFLQSLQATIR-FFSD 415 (420)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHHH-HTC-
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHH-HhcC
Confidence 999999988899999999999999998 7654
No 110
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=5e-28 Score=240.97 Aligned_cols=320 Identities=14% Similarity=0.068 Sum_probs=218.0
Q ss_pred CCCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhc--ccC-C
Q 012138 91 HCHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVK--KKF-S 163 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~--~~~-~ 163 (470)
..+|++.+++.+++......+..+ ..+...+++++++++++. +++++++||++|++.++++++...... ++. .
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 367899999999886533222211 234456788999998864 578999999999999999887621000 000 0
Q ss_pred CCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccccCCCc
Q 012138 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAG 238 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~n~~G 238 (470)
.+++.|++..++|++....... .+.. +..++.+ |+++|+++++++ ++++|++++++||+|
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~-~g~~------------~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG 185 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREM-MDLE------------YIYAPIKEDYTIDEKFVKDAVEDY--DVDGIIGIAGTTELG 185 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHH-HTCE------------EEEECBCTTSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTC
T ss_pred CCCeEEEECCcchhHHHHHHHH-cCce------------eEEEeeCCCCcCCHHHHHHHHhhc--CCeEEEEECCCCCCC
Confidence 1244888889887664333322 2211 1233322 899999999874 567777777799999
Q ss_pred cccCChhhHHHHHHHHHhcCcEEEEeccccCC--cccCC---------ccccccCCCCcceeeccccccCCCcceeEEEe
Q 012138 239 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGL--ARSGR---------MLASDWEEVRPDMVILGKALGGGVIPVSAVLA 307 (470)
Q Consensus 239 ~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~--g~~G~---------~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~ 307 (470)
.+.| +++|.++|++||++||+||+|+++ +..+. .+.+.. +++..+.+++|.+++|. ++|++++
T Consensus 186 ~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~-~~g~~~~ 259 (397)
T 3f9t_A 186 TIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPI-PSGGILF 259 (397)
T ss_dssp CBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCS-SCEEEEE
T ss_pred CCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCC-CceEEEE
Confidence 9997 999999999999999999999964 23332 233334 55555668889988887 9999887
Q ss_pred cHH-HHhhcC---cCCc--------cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 308 DKE-VMLCIQ---PGEH--------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 308 ~~~-~~~~~~---~~~~--------~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
+++ +.+.+. +... ++..+.+++++.++.+.+....-+++.++.+++++++.+.|++++.. .+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~-- 334 (397)
T 3f9t_A 260 KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFK---PVI-- 334 (397)
T ss_dssp SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---BSS--
T ss_pred eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCE---EEc--
Confidence 554 444432 1111 12222345555555554433323567778888888898888876211 121
Q ss_pred eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 376 RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+.+.++++.+. ...++.+.|.++||.+.++. ++++|++++..+|++++++++++|+++++
T Consensus 335 ~~~~~~~~~~~~------~~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 335 EPILNIVAIEDE------DYKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CCSSSEEEEECT------THHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCCccEEEEEeC------CHHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 245666666443 36789999999999998875 58999999988999999999999999875
No 111
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.96 E-value=2.2e-29 Score=253.20 Aligned_cols=298 Identities=13% Similarity=0.102 Sum_probs=199.1
Q ss_pred cHHHHHHHHhhhhC----CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCC----cEEEEE-ccCccccccchhcccC
Q 012138 118 KFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDE----AIIVSC-CGCFHGRTLAAISMSC 188 (470)
Q Consensus 118 ~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~----~~ii~~-~~~yhg~~~~~~~~~~ 188 (470)
+++.+++++.+.+| .++|++|+||++|++.+++.+.. +|+ ..|++. .++||+..........
T Consensus 80 lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~---------~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~ 150 (417)
T 3g7q_A 80 LLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG---------RRADGSTKKVLFPLAPEYIGYADSGLEDDL 150 (417)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB---------C----CCBEEEESSCCCHHHHHC-----CC
T ss_pred HHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC---------CCccCCcceEEEeCCCccccchhhccchhh
Confidence 34445555544333 46899999999999999998754 333 256664 9999887554322111
Q ss_pred CcccccCCCCCCCCeeeecCC------CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEE
Q 012138 189 DNEAIRGFGPLLPGHLKVDFG------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~------d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI 262 (470)
.... .+.+..++.+ |+++|+ ++ +++++|+++.++||+|.++ +.+.+++|.++|++||+++|
T Consensus 151 ~~~~-------~~~~~~~~~~~~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~li 217 (417)
T 3g7q_A 151 FVSA-------RPNIELLPEGQFKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIPLV 217 (417)
T ss_dssp EEEC-------CCEEEEEGGGEEEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEE
T ss_pred hccc-------cCcccccCCcccccccCHHHhc--cc---cCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEE
Confidence 0000 0111122211 777777 33 3788888766699999999 88889999999999999999
Q ss_pred EeccccCCcccCCcc-c--cccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH
Q 012138 263 ADEIQSGLARSGRML-A--SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 339 (470)
Q Consensus 263 ~Dev~~g~g~~G~~~-~--~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~ 339 (470)
+||+|+.+. .+..+ . .+..+....+.||||...+|+ |+|++++++++++.+.......+++.++++++++.+.++
T Consensus 218 ~De~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (417)
T 3g7q_A 218 IDNAYGVPF-PGIIFSEARPLWNPNIILCMSLSKLGLPGS-RCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIK 295 (417)
T ss_dssp EECTTCTTT-TCCBCSCCCCCCCTTEEEEEESGGGTCTTS-CCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHH
T ss_pred EeCCCcccc-ccccccccccCCCCCEEEEEechhccCCCc-ceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHc
Confidence 999997431 11111 0 111222334669999766898 999999999999988776667778888999988888776
Q ss_pred HHhh-----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC
Q 012138 340 VIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 413 (470)
Q Consensus 340 ~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 413 (470)
...- +.+.++++++.+.+.+.|++....+ .+.... ..|.++++.+.... .+..++++.|.++||.+.|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~g~~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~ 371 (417)
T 3g7q_A 296 RNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEE--RCLIHKPEGAIFLWLWFKDLP--ITTELLYQRLKARGVLMVPGH 371 (417)
T ss_dssp TTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTT--TCEEECCCBSSEEEEECTTCS--SCHHHHHHHHHHTTEECEEGG
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CceeeCCCcceEEEEEcCCCC--CCHHHHHHHHHHCCEEEECch
Confidence 3221 1244556666666766666532211 133333 44566666665411 367889999999999988642
Q ss_pred -------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 414 -------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 414 -------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+++||+++. ++++|++++++|.++++ ++.
T Consensus 372 ~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~-~~~ 414 (417)
T 3g7q_A 372 YFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIE-RAW 414 (417)
T ss_dssp GGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHH-HHH
T ss_pred hhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHH-HHH
Confidence 4689999764 99999999999999998 653
No 112
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.96 E-value=3.5e-28 Score=241.59 Aligned_cols=322 Identities=14% Similarity=0.137 Sum_probs=230.3
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKL 151 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~ 151 (470)
+.|+|..+. ++.+|++.+++.+++.. +++. ...+.+.++++++++++|.+ .+++++||++|++.+++.
T Consensus 20 ~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 20 KYKLFTAGP------VACFPEVLEIMKVQMFS--HRSK-EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp CSEECCSSS------CCCCHHHHHHTTSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred cceeecCCC------cCCcHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence 356665322 34678898888766532 1111 12456788999999988864 599999999999999997
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccc-cchhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCe
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRT-LAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQI 225 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~ 225 (470)
+.. +|+ .|++..++||+.. .......+.. +..++. .|+++|++++++. .++
T Consensus 91 l~~---------~gd-~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~-~~~ 147 (386)
T 2dr1_A 91 GVS---------KGG-KVLVTIIGAFGKRYKEVVESNGRK------------AVVLEYEPGKAVKPEDLDDALRKN-PDV 147 (386)
T ss_dssp HSC---------TTC-EEEEEESSHHHHHHHHHHHHTTCE------------EEEEECCTTCCCCHHHHHHHHHHC-TTC
T ss_pred hhc---------CCC-eEEEEcCCchhHHHHHHHHHhCCc------------eEEEecCCCCCCCHHHHHHHHhcC-CCC
Confidence 743 344 8888999998732 1111112211 112221 3899999999642 267
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCccee
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVS 303 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig 303 (470)
++|++++++||+|.+.| +++|.++|++||++||+||+|+.+.. .+....+ .+|++ +++|+++++. ++|
T Consensus 148 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~~--~~di~~~s~sK~~~~~~-g~G 217 (386)
T 2dr1_A 148 EAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMGGA---DIKFDKW--GLDVVFSSSQKAFGVPP-GLA 217 (386)
T ss_dssp CEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBTTB---CCCTTTT--TCSEEEEETTSTTCCCS-SCE
T ss_pred cEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEccccccCc---ccccccc--CCcEEEEeccccccCCC-ceE
Confidence 88888888999999997 99999999999999999999983321 1222223 34766 5559999776 789
Q ss_pred EEEecHHHHhhcCcC------------------CccCCCCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHH
Q 012138 304 AVLADKEVMLCIQPG------------------EHGSTFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHL 361 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~------------------~~~~t~~~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L 361 (470)
++++++++++.+.+. ....+++.++++++++.++|+.+.+. .+.++++++++++.+.|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L 297 (386)
T 2dr1_A 218 IGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGV 297 (386)
T ss_dssp EEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999988876421 12345678899999999999887543 67788888999999988
Q ss_pred HHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----CCCEEEEecCCCCCHHHHHHHHHH
Q 012138 362 FKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----HDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 362 ~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
++++.. ..... ...+.++++.++.. .+..++++.|.++||.+.++ ..+++|++++..++++++++++++
T Consensus 298 ~~~g~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 371 (386)
T 2dr1_A 298 REIGLD---ILAEPGHESPTITAVLTPPG---IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDN 371 (386)
T ss_dssp HHTTCC---BSSCTTCBCSSEEEEECCTT---CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHH
T ss_pred HHcCCe---eCcCccccCCceEEEEcCCC---CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 875211 11100 01466777766532 26788999999999999876 357999998888999999999999
Q ss_pred HHHHHhccc
Q 012138 437 LHDVLELDL 445 (470)
Q Consensus 437 l~~~l~~~~ 445 (470)
|+++++ ++
T Consensus 372 l~~~~~-~~ 379 (386)
T 2dr1_A 372 LREVIN-EL 379 (386)
T ss_dssp HHHHHH-HH
T ss_pred HHHHHH-Hc
Confidence 999998 65
No 113
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=1.2e-28 Score=250.05 Aligned_cols=303 Identities=14% Similarity=0.162 Sum_probs=202.6
Q ss_pred cHHHHHHHHhhhh----CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCC--------------cEEEEEccCcccc
Q 012138 118 KFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDE--------------AIIVSCCGCFHGR 179 (470)
Q Consensus 118 ~~~~l~~~l~~~~----~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~--------------~~ii~~~~~yhg~ 179 (470)
+++++++++.+.+ ..++|++|+||++|++.+++.+.. +|+ .+|++..++|++.
T Consensus 88 lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~---------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~ 158 (444)
T 3if2_A 88 FIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG---------AFVNEHSQDKESKSVDKSILLPLTPEYIGY 158 (444)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE---------EEECC-------CEEEEEEEESSSSCCGGG
T ss_pred HHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC---------CCccccccccccccccceEEEeCCCCccch
Confidence 3444455544433 346899999999999999987754 233 2344458888776
Q ss_pred ccchhcccCCcccccCCCCCCCCeeeecC----------CCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 180 TLAAISMSCDNEAIRGFGPLLPGHLKVDF----------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
.........-... ...+..++. -|+++|++++....+++++|+++.++||+|.++ +.+.+++
T Consensus 159 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~ 230 (444)
T 3if2_A 159 SDVHVEGQHFAAV-------LPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVL-TDEEMAH 230 (444)
T ss_dssp TTCCSSSCCEEEC-------CCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCC-CHHHHHH
T ss_pred hhcccccchhhcc-------CceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcC-CHHHHHH
Confidence 5432111000000 001111220 189999988543223788888765599999999 8889999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCcc-c--cccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCC
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRML-A--SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGG 326 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~-~--~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~ 326 (470)
|.++|++||++||+||+|+.+. .+..+ . ....+...++.||||.+.+|+ |+|++++++++++.+.......+++.
T Consensus 231 i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~-r~G~~~~~~~l~~~~~~~~~~~~~~~ 308 (444)
T 3if2_A 231 LAEIAKRYDIPLIIDNAYGMPF-PNIIYSDAHLNWDNNTILCFSLSKIGLPGM-RTGIIVADAKVIEAVSAMNAVVNLAP 308 (444)
T ss_dssp HHHHHHHTTCCEEEECTTCTTT-TCCBCSCCCCCCCTTEEEEEESTTTTCGGG-CCEEEECCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHCCCEEEEECCCCCcc-cccccccccccCCCCEEEEechhhccCCCC-ceEEEEECHHHHHHHHHHHHhccCCC
Confidence 9999999999999999997431 11111 0 112233445679999866898 99999999999998876666667778
Q ss_pred CHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHH
Q 012138 327 NPLASAVAIASLDVIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICL 400 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 400 (470)
+++.++++.+.++.... +.+.++++++.+.+.+.|.+..... .+... +..|.++++.+.... .+..++++
T Consensus 309 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~g~~~~~~~~~~~--~~~~~l~~ 384 (444)
T 3if2_A 309 TRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDY--PLMIHKPEGAIFLWLWFKDLP--ISTLDLYE 384 (444)
T ss_dssp CCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSS--SEEEECCCBSSEEEEEETTCS--SCHHHHHH
T ss_pred ChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CceEecCCccEEEEEEcCCCC--CCHHHHHH
Confidence 88888888877764221 1244555666666666665532211 13333 345666777665421 36788999
Q ss_pred HHHHcCceeccCC--------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 401 KMKERGILAKPTH--------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 401 ~l~~~Gv~~~~~~--------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.|.++||.+.|+. .+++||+++. ++++|++++++|.++++ ++.
T Consensus 385 ~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~-~~~ 441 (444)
T 3if2_A 385 RLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVR-ELY 441 (444)
T ss_dssp HHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHH-HHH
Confidence 9999999988652 1589999775 99999999999999998 654
No 114
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.96 E-value=1.2e-28 Score=246.64 Aligned_cols=327 Identities=13% Similarity=0.123 Sum_probs=221.2
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCC-CCCcHHHHHHHHhhh--hC---CCeEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAF-YNDKFPVFAERLTSM--FG---YDMVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~-~~~~~~~l~~~l~~~--~~---~~~v~~~~sGteA~ 145 (470)
|+.+|||..+... + ..+|.+.+++.++++...... ..| ......++++.++++ .| .++|++++|+++++
T Consensus 32 ~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDTT--Q-PLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCCC--C-CCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCCC--C-CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 6678899888543 2 278999999999987653211 112 123457888888887 35 46899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCH----HHHHHHHHhc
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDI----TALEKIFKES 221 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~Le~~l~~~ 221 (470)
+.+++++ . +|+ .|++..++|++........ +... +..++.++- .++++.
T Consensus 109 ~~~~~~~-~---------~gd-~Vl~~~p~y~~~~~~~~~~-g~~~-----------~~~~~~~~~~~~~~~l~~~---- 161 (400)
T 3asa_A 109 FRLLSFF-G---------PNQ-TVAIQDPSYPAYLDIARLT-GAKE-----------IIALPCLQENAFFPEFPED---- 161 (400)
T ss_dssp HHHHHHH-C---------SSC-EEEEEESCCHHHHHHHHHT-TCSE-----------EEEEECCGGGTTCCCCCTT----
T ss_pred HHHHHHc-C---------CCC-EEEECCCCcHHHHHHHHHc-CCcc-----------eEecccchhcCcccChhhc----
Confidence 9866543 2 454 7888999998765433222 2110 112221100 012111
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccCC----CCcceeecccccc
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEE----VRPDMVILGKALG 296 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~~----~~pdi~s~sK~l~ 296 (470)
.++++|+++.++||+|.++ +.+++++|.++|++||++||+||+|++|++.|.. .....++ ....+.+|||.++
T Consensus 162 -~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 239 (400)
T 3asa_A 162 -THIDILCLCSPNNPTGTVL-NKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG 239 (400)
T ss_dssp -CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT
T ss_pred -cCccEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC
Confidence 2677777656699999998 8999999999999999999999999988766542 2222222 1223569999998
Q ss_pred -CCCcceeEEEecHHH-------HhhcCcCCccCCC-CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 297 -GGVIPVSAVLADKEV-------MLCIQPGEHGSTF-GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 297 -gG~~~ig~v~~~~~~-------~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
+|+ |+|++++++++ ++.+.......++ +.++++++++.++|+....++++++++++++++.+.|++++
T Consensus 240 ~~Gl-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g-- 316 (400)
T 3asa_A 240 FAGI-RLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLATG-- 316 (400)
T ss_dssp TTTC-CCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTT--
T ss_pred Ccch-heeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHCC--
Confidence 898 99999998887 4444222223334 57899998888888764335678888888899988887741
Q ss_pred CCCceEEEec-cceeEEEE-eccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 368 FPNYVKEVRG-RGLFNAVE-FDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 368 ~p~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+....+ .|.++++. +... .+..++++.|.++ ||.+.|+ ..+++||+ +..+++++++++++|+
T Consensus 317 ----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~ 387 (400)
T 3asa_A 317 ----FEVFGGEHAPYLWVKPTQAN---ISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQ 387 (400)
T ss_dssp ----CEEEECSSSSEEEEECCCTT---CCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHH
T ss_pred ----CeeeCCCCceEEEEeccCCC---CCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHH
Confidence 333444 46666666 4322 1345688888765 9998875 25789999 6789999999999999
Q ss_pred HHHhccc
Q 012138 439 DVLELDL 445 (470)
Q Consensus 439 ~~l~~~~ 445 (470)
++++ +.
T Consensus 388 ~~~~-~~ 393 (400)
T 3asa_A 388 MAPA-LQ 393 (400)
T ss_dssp C------
T ss_pred HHHH-hh
Confidence 9887 54
No 115
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.96 E-value=7.6e-29 Score=249.85 Aligned_cols=344 Identities=13% Similarity=0.099 Sum_probs=229.4
Q ss_pred EEeccCCcccccCCCCCHHHHHHHH--HHHHHccccCCCC--CCCcHHHHHHHHhhhhCC--CeEEecCChhHHHH--HH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQ--EQAEKLTLSSRAF--YNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVE--TA 148 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~--~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~--~a 148 (470)
.+||..|.....+++.+|.+.+++. +.++. ......| ...-..++++.++++++. ++|++|+|+++|+. .+
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMD-GLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEET-TEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhc-chhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence 4688877554333446667877775 33331 1111122 123357888888888864 58999999999997 77
Q ss_pred HHHHHHhchhcccCCCC--------CcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHh
Q 012138 149 LKLARKWGYVKKKFSID--------EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g--------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~ 220 (470)
++.+.... +| ++.|++..++|++........+..... .+...+ .+ |+++|++++++
T Consensus 106 ~~~l~~~~-------~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~--g~---d~~~l~~~l~~ 169 (423)
T 3ez1_A 106 TFALLHGV-------RGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLT----VDMQSD--GP---DVDAVERLAGT 169 (423)
T ss_dssp HHHHHTCC-------TTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEE----EEEETT--EE---CHHHHHHHHHS
T ss_pred HHHHhccC-------CCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEe----ccCCCC--CC---CHHHHHHHHhh
Confidence 77665300 12 358889999998765544333221110 000011 12 89999999962
Q ss_pred cCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHH-HhcCcEEEEeccccCCcccC---C----cccc----ccCCCCcc
Q 012138 221 SGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLC-SKYNILMIADEIQSGLARSG---R----MLAS----DWEEVRPD 287 (470)
Q Consensus 221 ~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~-~~~gillI~Dev~~g~g~~G---~----~~~~----~~~~~~pd 287 (470)
..++++|+++| ++||||.++ +.+++++|.++| ++||++||+||+|+.+...+ . .+.. +..+....
T Consensus 170 -~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 247 (423)
T 3ez1_A 170 -DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFV 247 (423)
T ss_dssp -CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEE
T ss_pred -CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEE
Confidence 13789998775 799999999 888899999999 99999999999999532222 1 1111 12233344
Q ss_pred eeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH-Hh---h--hhHHHHHHHHHHHHHHHH
Q 012138 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-IR---D--EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 288 i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-~~---~--~~~~~~~~~~~~~l~~~L 361 (470)
+.||||.+.+|+ |+|++++++++++.+.......+++.+++.+.++.++++. .. + ....+.++++.+.+.+.|
T Consensus 248 ~~S~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 326 (423)
T 3ez1_A 248 FASTSKITFAGA-GLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVL 326 (423)
T ss_dssp EEESTTTSCSSS-SCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCchhhccCCc-ceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999977898 9999999999999887766667788999999998888875 11 1 122333344444444555
Q ss_pred HHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceecc-C---------CCCEEEEecCCCCCHHHH
Q 012138 362 FKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-T---------HDTIVRLTPPLSISSNEL 430 (470)
Q Consensus 362 ~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-~---------~~~~iR~~~~~~~t~e~i 430 (470)
.+.....+..+... +..|.++++.+... +...+.+.|.++||.+.| + ..+++||+++.. +++++
T Consensus 327 ~~~l~~~~~~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i 401 (423)
T 3ez1_A 327 RAELGEGGEYATWTLPKGGYFISLDTAEP----VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEV 401 (423)
T ss_dssp HHHHTTTTSSEEECCCSBSSCEEEEESSS----CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHH
T ss_pred HHhcCcCCCceEEeCCCccEEEEEECCCC----cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHH
Confidence 44222111013322 34566777766542 467888999999999988 2 258999998655 99999
Q ss_pred HHHHHHHHHHHhcccC
Q 012138 431 QEGSKALHDVLELDLP 446 (470)
Q Consensus 431 ~~~~~~l~~~l~~~~~ 446 (470)
++++++|.++++ ++.
T Consensus 402 ~~~~~~l~~~l~-~~~ 416 (423)
T 3ez1_A 402 RTAMQVVAACIR-LAT 416 (423)
T ss_dssp HHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHH-HHH
Confidence 999999999998 653
No 116
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.96 E-value=1.9e-28 Score=246.74 Aligned_cols=332 Identities=11% Similarity=0.022 Sum_probs=221.9
Q ss_pred CeEEeccCCcccccCCCCC--HHHHHHHHHHHHHcc-c--cCCCCCCCcHHHHHHHHhhhhC----CC--eEEecCChhH
Q 012138 75 NKYLDFLSAYSAVNQGHCH--PKIMKALQEQAEKLT-L--SSRAFYNDKFPVFAERLTSMFG----YD--MVLPMNTGAE 143 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~-~--~~~~~~~~~~~~l~~~l~~~~~----~~--~v~~~~sGte 143 (470)
..+|||..|....+.++.+ |.|.+++.++++... + .+.....++++.+++++....+ .+ ++++|+||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 3568998886555666665 899999999987622 1 1112233445566666654433 45 8999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----C---CHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----G---DITALEK 216 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d~~~Le~ 216 (470)
|+..+++++.... +|+ .|++..++|++........+.. +..+++ + |+++|++
T Consensus 129 al~~~~~~~~~~~-------~gd-~Vlv~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~ 187 (420)
T 4f4e_A 129 ALKIGADFLRTLN-------PKA-KVAISDPSWENHRALFDMAGFE-------------VVAYPYYDAKTNGVNFDGMLA 187 (420)
T ss_dssp HHHHHHHHHHHHC-------TTC-CEEEEESCCHHHHHHHHHTTCC-------------EEEEECEETTTTEECHHHHHH
T ss_pred HHHHHHHHHHHhC-------CCC-EEEEeCCCcHhHHHHHHHcCCe-------------EEEeeeeccccCccCHHHHHH
Confidence 9999977543210 454 7888999998765444433322 123332 2 8999999
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC--cccc----ccCCCCcceee
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR--MLAS----DWEEVRPDMVI 290 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~--~~~~----~~~~~~pdi~s 290 (470)
.++++.+++++++++.++||||.++ +.+.+++|.++|++||+++|+||+|.+|.+.+. .... +..+....+.|
T Consensus 188 ~l~~~~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 266 (420)
T 4f4e_A 188 ALNGYEPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSS 266 (420)
T ss_dssp HHTTCCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEe
Confidence 9986545788888888899999999 899999999999999999999999998876541 1111 11222223448
Q ss_pred cccccc-CCCcceeEEEe---cHHHHhhc----CcCCccCCCCCCHHHHHHHHHHHHHH------hh--hhHHHHHHHHH
Q 012138 291 LGKALG-GGVIPVSAVLA---DKEVMLCI----QPGEHGSTFGGNPLASAVAIASLDVI------RD--EKLAERSAHLG 354 (470)
Q Consensus 291 ~sK~l~-gG~~~ig~v~~---~~~~~~~~----~~~~~~~t~~~~~~~~aaa~a~l~~~------~~--~~~~~~~~~~~ 354 (470)
|||.++ +|+ |+|++++ ++++++.+ .......+.+.+.++++++.+.++.. ++ +.+++++++++
T Consensus 267 ~SK~~~~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 345 (420)
T 4f4e_A 267 FSKSFSLYGE-RVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMR 345 (420)
T ss_dssp CTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCcCcCC-CcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 798 9999863 56655432 21112334446677777766656531 11 45667777788
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+++.+.|+++... ..+....+.+.++.| +.. +...+.+.|.++||.+.++. |++++ .++++++++++
T Consensus 346 ~~l~~~L~~~~~~--~~~~~~~~~~g~~~~-~~~-----~~~~~~~~l~~~gI~v~~~~----Ris~~-~~~~~~i~~~~ 412 (420)
T 4f4e_A 346 NGLVERLKAAGIE--RDFSFINAQRGMFSY-SGL-----TSAQVDRLREEFGIYAVSTG----RICVA-ALNTRNLDVVA 412 (420)
T ss_dssp HHHHHHHHHTTCS--SCCTHHHHSCSSEEE-CCC-----CHHHHHHHHHHHCEECCTTS----EEEGG-GCCTTTHHHHH
T ss_pred HHHHHHHHhcCCC--CCceeECCCccEEEE-eCC-----CHHHHHHHHHhCCEEecCCC----eEEEe-cCCHHHHHHHH
Confidence 8888887765321 012223345555555 322 34566777778899998863 99875 34778899999
Q ss_pred HHHHHHHh
Q 012138 435 KALHDVLE 442 (470)
Q Consensus 435 ~~l~~~l~ 442 (470)
++|+++++
T Consensus 413 ~~l~~~l~ 420 (420)
T 4f4e_A 413 NAIAAVLK 420 (420)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998864
No 117
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.96 E-value=1.2e-28 Score=248.77 Aligned_cols=342 Identities=13% Similarity=0.085 Sum_probs=226.3
Q ss_pred EEeccCCcccccCCCCCHHHHHHH--HHHHHHccccCCCCC-CCcHHHHHHHHhhhhCC--CeEEecCChhHHH--HHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKAL--QEQAEKLTLSSRAFY-NDKFPVFAERLTSMFGY--DMVLPMNTGAEGV--ETAL 149 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~--~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~--~~al 149 (470)
.+||..|.......+.++.+.+++ .++++........|. ..-..++.+.++++++. ++|++|+|+++++ +.++
T Consensus 35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 114 (427)
T 3ppl_A 35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS 114 (427)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence 467777644333222233455544 333332211112222 22357788888887754 6899999999999 5777
Q ss_pred HHHHHhchhcccCCCC---------CcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHh
Q 012138 150 KLARKWGYVKKKFSID---------EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g---------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~ 220 (470)
+++.... ++ ++.|++..++|++........+..... .+...+ .+ |+++|+++++.
T Consensus 115 ~~l~~~~-------~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~----v~~~~~--g~---d~~~l~~~l~~ 178 (427)
T 3ppl_A 115 WSYIFGN-------NDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMIS----VPMNED--GP---DMDAVEELVKN 178 (427)
T ss_dssp HHHHHCC-------TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEE----EEEETT--EE---CHHHHHHHTTS
T ss_pred HHHhccC-------CcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEE----eCCCCC--CC---CHHHHHHHHhc
Confidence 7665410 11 348889999998765444333221100 010011 12 89999999853
Q ss_pred cCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHH-HhcCcEEEEeccccCCcccCCc------ccc----ccCCCCcce
Q 012138 221 SGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLC-SKYNILMIADEIQSGLARSGRM------LAS----DWEEVRPDM 288 (470)
Q Consensus 221 ~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~-~~~gillI~Dev~~g~g~~G~~------~~~----~~~~~~pdi 288 (470)
.++++|+++| ++||||.++ +.+.+++|.++| ++||++||+||+|+++.+.+.. +.. +..+....+
T Consensus 179 --~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (427)
T 3ppl_A 179 --PQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAF 255 (427)
T ss_dssp --TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEE
T ss_pred --CCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEE
Confidence 3789999885 799999999 888899999999 9999999999999985433321 111 133444567
Q ss_pred eeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHHHHHH
Q 012138 289 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI---RD--EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 289 ~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~~ 363 (470)
.||||.+.+|+ |+|++++++++++.+.......+++.+++.+.++.++++.. .+ ...++.++++.+.+.+.|.+
T Consensus 256 ~S~SK~~~~G~-r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 334 (427)
T 3ppl_A 256 TSTSKITLAGA-GVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDS 334 (427)
T ss_dssp EESTTTSCTTS-SCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhccCcCc-cEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999977898 99999999999988876666667788999888887777531 11 23444555555566666654
Q ss_pred HHhhCCCceEEEec-cceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----------CCCEEEEecCCCCCHHHHHH
Q 012138 364 IQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 364 l~~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------~~~~iR~~~~~~~t~e~i~~ 432 (470)
.....+ .+....+ .|.++++.+... +..++.+.|.++||.+.|+ ..+++||+++.. ++++|++
T Consensus 335 ~l~~~~-~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~ 408 (427)
T 3ppl_A 335 RLAEYG-VAQWTVPAGGYFISLDVVPG----TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEV 408 (427)
T ss_dssp HHGGGT-CCEECCCSBSSCEEEECSTT----CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHH
T ss_pred hcCCCC-ceEEeCCCccEEEEEECCcc----hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHH
Confidence 222211 2333233 466666655432 4778899999999999882 368999998654 9999999
Q ss_pred HHHHHHHHHhccc
Q 012138 433 GSKALHDVLELDL 445 (470)
Q Consensus 433 ~~~~l~~~l~~~~ 445 (470)
++++|.++++ ++
T Consensus 409 ~~~~l~~~l~-~~ 420 (427)
T 3ppl_A 409 AMDGVATCVL-LA 420 (427)
T ss_dssp HHHHHHHHHH-HH
T ss_pred HHHHHHHHHH-HH
Confidence 9999999998 65
No 118
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.96 E-value=1.8e-28 Score=247.16 Aligned_cols=340 Identities=14% Similarity=0.103 Sum_probs=228.4
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHH-HccccCCCCCCC-cHHHHHHHHhhhhCC--CeEEecCChhHHH--HHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAE-KLTLSSRAFYND-KFPVFAERLTSMFGY--DMVLPMNTGAEGV--ETALK 150 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~~~~~~-~~~~l~~~l~~~~~~--~~v~~~~sGteA~--~~al~ 150 (470)
++||..|.....+...+|.+.+++.+++. ........|... -..++.+.++++++. ++|++|+|+++++ ..+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 57888875431112255677777655421 111011123222 257788888887764 5899999999997 56666
Q ss_pred HHHHhchhcccCCC---C--------CcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHH
Q 012138 151 LARKWGYVKKKFSI---D--------EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK 219 (470)
Q Consensus 151 ~~~~~~~~~~~~~~---g--------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~ 219 (470)
.+.. + | .+.|++..|+|++........+..... .+...+ .+ |+++|+++++
T Consensus 114 ~l~~---------~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~----v~~~~~--g~---d~~~l~~~l~ 175 (422)
T 3d6k_A 114 SYTW---------GNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMIN----VPMTDE--GP---DMGVVRELVK 175 (422)
T ss_dssp HHHH---------CCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEE----EEEETT--EE---CHHHHHHHHT
T ss_pred HhcC---------cccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEe----cCCCCC--CC---CHHHHHHHHh
Confidence 6543 2 2 236889999998776544333221110 011011 12 8999999997
Q ss_pred hcCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHHH-hcCcEEEEeccccC--CcccCCcc-cc-------ccCCCCcc
Q 012138 220 ESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCS-KYNILMIADEIQSG--LARSGRML-AS-------DWEEVRPD 287 (470)
Q Consensus 220 ~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~-~~gillI~Dev~~g--~g~~G~~~-~~-------~~~~~~pd 287 (470)
+. ++++|++.| ++||||.++ +.+++++|.++|+ +||++||+||+|.. |+..+..+ .. +..+....
T Consensus 176 ~~--~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (422)
T 3d6k_A 176 DP--QVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWF 252 (422)
T ss_dssp ST--TEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEE
T ss_pred cC--CCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEE
Confidence 43 688888443 799999999 8999999999999 99999999999984 65544221 22 12344456
Q ss_pred eeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHHHHH
Q 012138 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI---RD--EKLAERSAHLGEELRQHLF 362 (470)
Q Consensus 288 i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~ 362 (470)
+.||||..++|+ |+||+++++++++.+.......+++.++++++++.++|+.. .+ +.+++.++++.+++.+.|.
T Consensus 253 ~~S~SK~~~~Gl-riG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 331 (422)
T 3d6k_A 253 MSSTSKITHAGS-GVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILD 331 (422)
T ss_dssp EEESTTTSCTTS-SCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcChhhhcCccc-ceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999977898 99999999999988876555567788999999888877531 11 2344455556666666666
Q ss_pred HHHhhCCCceEEEec-cceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-C---------CCEEEEecCCCCCHHHHH
Q 012138 363 KIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-H---------DTIVRLTPPLSISSNELQ 431 (470)
Q Consensus 363 ~l~~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-~---------~~~iR~~~~~~~t~e~i~ 431 (470)
+.....+ .+....+ .|.++++.+... +...+.+.|.++||.+.|+ . .+++||+++. .++++++
T Consensus 332 ~~l~~~~-~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~ 405 (422)
T 3d6k_A 332 SRLSEYG-VAKWTSPTGGYFISVDVVPG----TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELE 405 (422)
T ss_dssp HHHGGGT-CEEECCCSBSSCEEEEESTT----CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHH
T ss_pred HhcCcCC-ceEEeCCCcceEEEEECCCC----CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHH
Confidence 5332221 2333344 566666666432 4567888899999999883 1 4789999776 8999999
Q ss_pred HHHHHHHHHHhccc
Q 012138 432 EGSKALHDVLELDL 445 (470)
Q Consensus 432 ~~~~~l~~~l~~~~ 445 (470)
+++++|+++++ ++
T Consensus 406 ~~~~~l~~~l~-~~ 418 (422)
T 3d6k_A 406 VAMDGFATCVL-MA 418 (422)
T ss_dssp HHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHH-HH
Confidence 99999999987 65
No 119
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=3.5e-28 Score=242.06 Aligned_cols=317 Identities=15% Similarity=0.160 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.+|++.+++.+++.. +... ...+...+++++++++++.+ .+++++||++|++.+++.+.. +|+ .
T Consensus 34 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~---------~gd-~ 100 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQK-EMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLE---------PGD-S 100 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTSH-HHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCC---------TTC-E
T ss_pred CCHHHHHHhcccccC--cccH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCC---------CCC-E
Confidence 578888887664311 1110 12345678889999988754 589999999999999997743 455 6
Q ss_pred EEEEccCccccc-cchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 169 IVSCCGCFHGRT-LAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 169 ii~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
|++..++|++.. .......+..... .+...+ .. .|+++|+++++++ ++++|++++++||+|.+.| +
T Consensus 101 vl~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~-~~---~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l 167 (393)
T 3kgw_A 101 FLTGTNGIWGMRAAEIADRIGARVHQ---MIKKPG-EH---YTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----L 167 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEE---EECCTT-CC---CCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----C
T ss_pred EEEEeCCchhHHHHHHHHHcCCceEE---EeCCCC-CC---CCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----H
Confidence 666677776532 2222222211110 011011 11 2899999999874 6788888888999999997 8
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCCc-----
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH----- 320 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~----- 320 (470)
++|.++|++||++||+||+|+ ++ +..+..+.++ +|++ +++|+++|+. ++|++++++++++.+.....
T Consensus 168 ~~i~~l~~~~~~~li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
T 3kgw_A 168 DGFGELCHRYQCLLLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAPP-GISLISFNDKAKYKVYSRKTKPVSF 241 (393)
T ss_dssp TTHHHHHHHTTCEEEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCCS-SCEEEEECHHHHHHHHTCSSCCSCS
T ss_pred HHHHHHHHHcCCEEEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCCC-ceeEEEECHHHHHHHhccCCCCCce
Confidence 999999999999999999997 21 2222233344 3555 5559998876 89999999999887753211
Q ss_pred ------------------cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceE-E-Eec
Q 012138 321 ------------------GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK-E-VRG 377 (470)
Q Consensus 321 ------------------~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~-~-~~~ 377 (470)
...++.++.+++++.++++.+.+ +++.++++++++++.+.|++++.. ... . ...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~ 318 (393)
T 3kgw_A 242 YTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLK---FFVKDPEIR 318 (393)
T ss_dssp TTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC---BSSSSGGGB
T ss_pred eecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCe---eccCChhhc
Confidence 11345688888888888887665 567888888999999998886221 110 0 011
Q ss_pred cceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 378 RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.+.+.++.+... .+..++.+.|+++ ||.+.++ .++++|+++ ++.+|++++++++++|+++++ ++.+
T Consensus 319 ~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~-~~~~ 390 (393)
T 3kgw_A 319 LPTITTVTVPAG---YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQ-HCPK 390 (393)
T ss_dssp CSSEEEEECCTT---BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHH-HSCB
T ss_pred CCeEEEEeCCCC---CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHH-hhhh
Confidence 244555655432 3678899999998 9999875 368999997 777799999999999999999 7653
No 120
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=3.9e-27 Score=236.63 Aligned_cols=332 Identities=18% Similarity=0.136 Sum_probs=230.2
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc-cccCC--C---CCCCcHHHHHHHHhhhhCC--CeEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL-TLSSR--A---FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~--~---~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA 144 (470)
+|..|+|+.+. ++.+|.+.+++.++++.. ..... . ...+...++++++++++|. +++++++||+++
T Consensus 27 ~~~~yld~~~~------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCCc------CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 46788887543 357899999999998753 11110 0 1135568899999999975 489999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc-ccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS-MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
++.+++.++.+.... .+|+++| +..+.+|+....... +.... ..+ ..+..++. +++|++++++
T Consensus 101 l~~al~~~~~~~~~~---~~gd~vi-i~~~~~~~~~~~~~~~~~~~~--~~g-----~~~~~v~~--~~~l~~~i~~--- 164 (416)
T 1qz9_A 101 LFKVLSAALRVQATR---SPERRVI-VTETSNFPTDLYIAEGLADML--QQG-----YTLRLVDS--PEELPQAIDQ--- 164 (416)
T ss_dssp HHHHHHHHHHHHHHH---STTCCEE-EEETTSCHHHHHHHHHHHHHH--CSS-----CEEEEESS--GGGHHHHCST---
T ss_pred HHHHHHhhccccccc---CCCCcEE-EEcCCCCCchHHHHHHHHHHh--cCC-----ceEEEeCc--HHHHHHHhCC---
Confidence 999998775310000 0466444 455555665443221 10000 000 11345544 7888888865
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceee--ccccccCCCcc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI--LGKALGGGVIP 301 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ 301 (470)
++++|++++++||+|.+.| +++|.++|++||++||+||+|+ +|... +....+ .+|+++ ++|.+.+|. +
T Consensus 165 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~~K~l~~g~-~ 234 (416)
T 1qz9_A 165 DTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADYAIGCTYKYLNGGP-G 234 (416)
T ss_dssp TEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEECSSSTTCCCT-T
T ss_pred CceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCEEEecCcccCCCCC-C
Confidence 7899998888999999997 9999999999999999999997 33221 112222 357664 569998887 8
Q ss_pred e-eEEEecHHHHhhcCcCCcc-----------------------CCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHH
Q 012138 302 V-SAVLADKEVMLCIQPGEHG-----------------------STFGGNPLASAVAIASLDVIRD---EKLAERSAHLG 354 (470)
Q Consensus 302 i-g~v~~~~~~~~~~~~~~~~-----------------------~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~ 354 (470)
+ |++++++++++.+.+...+ ...+.++.+++++.++++.+.+ +++.+++++++
T Consensus 235 ~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 314 (416)
T 1qz9_A 235 SQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALT 314 (416)
T ss_dssp CCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8 9999999987776653211 1234688888888889988764 45788888899
Q ss_pred HHHHHHHHHHHhhCCCceEEEec-----cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecC-CCCCHH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRG-----RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPP-LSISSN 428 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~-~~~t~e 428 (470)
+++.+.|+++.... .+....+ .+.++++.+. +..++.+.|.++||.+.....+++|++++ +.+|++
T Consensus 315 ~~l~~~L~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~gi~~~~~~~~~lRis~~~~~~t~~ 386 (416)
T 1qz9_A 315 DLFIELVEQRCAAH--ELTLVTPREHAKRGSHVSFEHP------EGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFT 386 (416)
T ss_dssp HHHHHHHHHHHTTS--CCEECSCSSGGGBCSEEEEECT------THHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHH
T ss_pred HHHHHHHHhhccCC--CeEEeCCCCHHHcCCEEEEecC------CHHHHHHHHHhCCcEeccCCCCeEEEeCcccCCCHH
Confidence 99999998752100 1222222 3566666543 36789999999999987656789999987 588999
Q ss_pred HHHHHHHHHHHHHhccc
Q 012138 429 ELQEGSKALHDVLELDL 445 (470)
Q Consensus 429 ~i~~~~~~l~~~l~~~~ 445 (470)
++++++++|+++++ +.
T Consensus 387 ~i~~~~~~l~~~~~-~~ 402 (416)
T 1qz9_A 387 EVWDAVQILGEILD-RK 402 (416)
T ss_dssp HHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHh-cc
Confidence 99999999999998 64
No 121
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=9.6e-28 Score=239.21 Aligned_cols=323 Identities=14% Similarity=0.116 Sum_probs=226.0
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALK 150 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~ 150 (470)
++.|+|..+. ++.+|++.+++.+++.. +++. ...+.+.++++++++++|.+ ++++|+||++|++.+++
T Consensus 33 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~ 103 (393)
T 1vjo_A 33 PSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLDP-AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIA 103 (393)
T ss_dssp CCCEECSSSC------CCCCHHHHHHHSSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHH
T ss_pred ccceeccCCC------CCCCHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHH
Confidence 3567764332 34789999988776542 1111 12356788999999988754 79999999999999999
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccc--cccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHG--RTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
.+.. +|+ .|++..++|++ ..... ...+..... .+...+ . ..|+++|++++++. ++++|
T Consensus 104 ~~~~---------~gd-~Vl~~~~~~~~~~~~~~~-~~~g~~~~~---v~~~~~-~---~~d~~~l~~~l~~~--~~~~v 163 (393)
T 1vjo_A 104 NAVE---------PGD-VVLIGVAGYFGNRLVDMA-GRYGADVRT---ISKPWG-E---VFSLEELRTALETH--RPAIL 163 (393)
T ss_dssp HHCC---------TTC-EEEEEESSHHHHHHHHHH-HHTTCEEEE---EECCTT-C---CCCHHHHHHHHHHH--CCSEE
T ss_pred hccC---------CCC-EEEEEcCChhHHHHHHHH-HHcCCceEE---EecCCC-C---CCCHHHHHHHHhhC--CceEE
Confidence 8743 454 78889999987 22221 111211110 011000 0 13899999999864 56788
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceee--ccccccCCCcceeEEE
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVL 306 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ig~v~ 306 (470)
++++++||+|.+.| +++|.++|++||++||+||+|+ +|... +.. ....+|+++ ++|+++++. ++|+++
T Consensus 164 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~--~~~--~~~~~di~~~s~sK~l~~~~-~~G~l~ 233 (393)
T 1vjo_A 164 ALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP--IFL--DAWGVDLAYSCSQKGLGCSP-GASPFT 233 (393)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC--CCT--TTTTCSEEECCSSSTTCSCS-SCEEEE
T ss_pred EEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC--Ccc--cccCccEEEEcCcccccCCC-ceEEEE
Confidence 88888999999997 8999999999999999999998 54321 222 233567764 559999877 999999
Q ss_pred ecHHHHhhcCc-------CCc------------cCCC-CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Q 012138 307 ADKEVMLCIQP-------GEH------------GSTF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 307 ~~~~~~~~~~~-------~~~------------~~t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~ 363 (470)
+++++++.+.. ... ...+ +.++++++++.++++.+.+ +++.++++++++++.+.|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 313 (393)
T 1vjo_A 234 MSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED 313 (393)
T ss_dssp ECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877632 110 2234 6788999999999988654 46778888899999999987
Q ss_pred HHhhCCCceEEEec--cceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCC----CCEEEEec-CCCCCHHHHHHHHH
Q 012138 364 IQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTH----DTIVRLTP-PLSISSNELQEGSK 435 (470)
Q Consensus 364 l~~~~p~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~iR~~~-~~~~t~e~i~~~~~ 435 (470)
++ +. ... ..+ .+.++.+.++.. .+..++++.|.++ ||.+.++. ++++|+++ ++..++++++++++
T Consensus 314 ~g--~~-~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~ 386 (393)
T 1vjo_A 314 IG--LS-LHV-EKEYRLPTLTTVCIPDG---VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIP 386 (393)
T ss_dssp TT--CC-BSS-CGGGBCSSEEEEECCTT---CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred cC--Cc-ccC-CccccCCcEEEEEcCCC---CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHH
Confidence 52 21 111 111 234556655332 2678899999998 99998763 68999994 56678889999999
Q ss_pred HHHHHHh
Q 012138 436 ALHDVLE 442 (470)
Q Consensus 436 ~l~~~l~ 442 (470)
+|+++++
T Consensus 387 ~l~~~l~ 393 (393)
T 1vjo_A 387 ALEQVLR 393 (393)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998864
No 122
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=2.3e-27 Score=233.72 Aligned_cols=328 Identities=13% Similarity=0.109 Sum_probs=226.1
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHHHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~~~al~~~ 152 (470)
++||..|. ++ .+|+|.+++.+++ .+....+..+...+++++++++++. +++++++||++|++.+++.+
T Consensus 5 ~~~~~~gp----~~-~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 76 (366)
T 1m32_A 5 YLLLTPGP----LT-TSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA 76 (366)
T ss_dssp CEECSSSS----CC-CCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred cccccCCC----cC-CCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence 56777772 22 7899999987753 2211111126678899999999873 26999999999999999977
Q ss_pred HHhchhcccCCCCCcEEEEEccCcccccc-chhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEc
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~e 231 (470)
.. +|+ .|++.++.||+... ......+..... .+... . .+.|+++|+++++++ .++++|++.
T Consensus 77 ~~---------~gd-~vi~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~-~---~~~d~~~l~~~l~~~-~~~~~v~~~ 138 (366)
T 1m32_A 77 LG---------PQD-KVLIVSNGAYGARMVEMAGLMGIAHHA---YDCGE-V---ARPDVQAIDAILNAD-PTISHIAMV 138 (366)
T ss_dssp CC---------TTC-CEEEEESSHHHHHHHHHHHHHTCCEEE---EECCT-T---SCCCHHHHHHHHHHC-TTCCEEEEE
T ss_pred cC---------CCC-eEEEEeCCCccHHHHHHHHHhCCceEE---EeCCC-C---CCCCHHHHHHHHhcC-CCeEEEEEe
Confidence 53 455 55666666676532 121111211110 01100 0 123899999999863 246677655
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecH
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADK 309 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~ 309 (470)
.++||+|.+.| +++|.++|++||++||+||+|+ ++... +....+ .+|++ +++|+++++. ++|++++++
T Consensus 139 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~~--~~di~~~s~~K~~~~~~-g~G~~~~~~ 208 (366)
T 1m32_A 139 HSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAAL--HIDYLISSANKCIQGVP-GFAFVIARE 208 (366)
T ss_dssp SEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTTT--TCSEEEEESSSTTCCCS-SEEEEEEEH
T ss_pred cccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--cccccc--CccEEEecCcccccCCC-ceEEEEECH
Confidence 55999999997 9999999999999999999997 32221 122222 35665 6789998776 889999999
Q ss_pred HHHhhcCcCCc------------------cCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 310 EVMLCIQPGEH------------------GSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 310 ~~~~~~~~~~~------------------~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
++++.+..... ...++.++.+++++.++++.+.+ +.+.++++++++++.+.|++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~-- 286 (366)
T 1m32_A 209 QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALG-- 286 (366)
T ss_dssp HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCC--
Confidence 99887764311 11357888999889899987754 3477888888889988888752
Q ss_pred CCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhc
Q 012138 368 FPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLEL 443 (470)
Q Consensus 368 ~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 443 (470)
+. ..... ...|.++++.+.... +.+..++.+.|.++||.+.++ ..+++|++++..++++++++++++|+++++
T Consensus 287 ~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~- 363 (366)
T 1m32_A 287 FN-TLLDDELHSPIITAFYSPEDP-QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY- 363 (366)
T ss_dssp CC-BSSCGGGBCSSEEEEECCCCT-TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT-
T ss_pred Ce-eccCchhcCceEEEEEcCccC-CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHH-
Confidence 11 11110 123557777665300 126788999999999999876 468999999988999999999999999987
Q ss_pred cc
Q 012138 444 DL 445 (470)
Q Consensus 444 ~~ 445 (470)
++
T Consensus 364 ~~ 365 (366)
T 1m32_A 364 WT 365 (366)
T ss_dssp TC
T ss_pred hc
Confidence 64
No 123
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=1.2e-27 Score=240.79 Aligned_cols=328 Identities=14% Similarity=0.152 Sum_probs=228.9
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHH--HccccCCC--C-----CCCcHHHHHHHHhhhhCCC--eEEecCC
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE--KLTLSSRA--F-----YNDKFPVFAERLTSMFGYD--MVLPMNT 140 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~~~~--~-----~~~~~~~l~~~l~~~~~~~--~v~~~~s 140 (470)
.++.-|+|+.++ ++.+|++.+++.+++. .....+.. + ..+...+++++++++++.+ ++++++|
T Consensus 20 ~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 93 (423)
T 3lvm_A 20 MKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG 93 (423)
T ss_dssp CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESS
T ss_pred cCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCC
Confidence 355678887654 3478999999998876 32111111 1 1234578999999998865 8999999
Q ss_pred hhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc--cCCcccccCCCCCCCCeeeecCC-----CHHH
Q 012138 141 GAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM--SCDNEAIRGFGPLLPGHLKVDFG-----DITA 213 (470)
Q Consensus 141 GteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~~ 213 (470)
|++|++.+++++..+ +.+ +| +.|++..++|++.......+ .+.. +..++.+ |+++
T Consensus 94 gt~a~~~a~~~l~~~-~~~----~g-d~Vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~ 155 (423)
T 3lvm_A 94 ATESDNLAIKGAANF-YQK----KG-KHIITSKTEHKAVLDTCRQLEREGFE------------VTYLAPQRNGIIDLKE 155 (423)
T ss_dssp HHHHHHHHHHHHHHH-HTT----TC-CEEEEETTSCHHHHHHHHHHHHTTCE------------EEEECCCTTSCCCHHH
T ss_pred hHHHHHHHHHHHHHh-hcc----CC-CEEEECCccchHHHHHHHHHHHcCCE------------EEEeccCCCCccCHHH
Confidence 999999999977642 111 24 48888999987654333222 1111 1222222 8999
Q ss_pred HHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceee--c
Q 012138 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI--L 291 (470)
Q Consensus 214 Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~ 291 (470)
|++++++ ++++|++++++||+|.+.| +++|.++|++||++||+||+|+. +. . ..+.....+|+++ +
T Consensus 156 l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~---~-~~~~~~~~~di~~~s~ 223 (423)
T 3lvm_A 156 LEAAMRD---DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GK---L-PIDLSQLKVDLMSFSG 223 (423)
T ss_dssp HHHHCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TT---S-CCCTTTSCCSEEEEES
T ss_pred HHHhcCC---CcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CC---C-CcChhhcCCCEEEech
Confidence 9999876 7899999988999999997 99999999999999999999973 11 1 1222233467765 5
Q ss_pred cccccCCCcceeEEEecHHHHhhcCcCCc-------cCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHH
Q 012138 292 GKALGGGVIPVSAVLADKEVMLCIQPGEH-------GSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLF 362 (470)
Q Consensus 292 sK~l~gG~~~ig~v~~~~~~~~~~~~~~~-------~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~ 362 (470)
+|.+ |+. ++|++++++++++.+..... ....+.++.+++++.++++.+.+ +++.++++++++++.+.|+
T Consensus 224 sK~~-g~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 301 (423)
T 3lvm_A 224 HKIY-GPK-GIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK 301 (423)
T ss_dssp TTTT-SCS-SCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhc-CCC-CeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5954 444 68999999887777765432 22345678888888888887765 5677777777777777775
Q ss_pred HHHhhCCCceEEEecc----ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CC
Q 012138 363 KIQQQFPNYVKEVRGR----GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DT 415 (470)
Q Consensus 363 ~l~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~ 415 (470)
++ | .+...... +.++.+.+.. .+..++.+.|.+ |.+.++. .+
T Consensus 302 ~~----~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 370 (423)
T 3lvm_A 302 DI----E-EVYLNGDLEHGAPNILNVSFNY----VEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHS 370 (423)
T ss_dssp TS----T-TEEEESCSTTBCTTEEEEEETT----SCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHT
T ss_pred cC----C-CEEEeCCccccCCCeEEEEeCC----CCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCc
Confidence 43 2 34333332 3455555532 257788888876 7776642 38
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
++||+++..++++++++++++|+++++ ++++..
T Consensus 371 ~iRi~~~~~~t~e~i~~~~~~l~~~~~-~~~~~~ 403 (423)
T 3lvm_A 371 SIRFSLGRFTTEEEIDYTIELVRKSIG-RLRDLS 403 (423)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHH-HHHTSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHH-HhhccC
Confidence 999999999999999999999999998 876543
No 124
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=1.8e-27 Score=236.16 Aligned_cols=315 Identities=15% Similarity=0.136 Sum_probs=220.8
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
.+|++.+++.+++... ......+...+++++++++++. +++++++||++|++ +++.+.. +|+
T Consensus 13 ~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~---------~gd- 78 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF---TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLK---------PND- 78 (384)
T ss_dssp CCHHHHHHTTCCSCCT---TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCC---------TTC-
T ss_pred CCHHHHHHhhcccccc---ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcC---------CCC-
Confidence 5788888887665321 1111234567889999998875 45999999999999 8876532 454
Q ss_pred EEEEEccCccccccchh-cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhh
Q 012138 168 IIVSCCGCFHGRTLAAI-SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 168 ~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
.|++..++||+...... ...+.... +.+...+ ..+ |+++|+++++++ ++++|++++++||+|.+.|
T Consensus 79 ~vi~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~-~~~---d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~---- 145 (384)
T 3zrp_A 79 KILVVSNGVFGDRWEQIFKRYPVNVK---VLRPSPG-DYV---KPGEVEEEVRKS--EYKLVALTHVETSTGVREP---- 145 (384)
T ss_dssp EEEEECSSHHHHHHHHHHTTSSCEEE---EECCSTT-CCC---CHHHHHHHHHHS--CEEEEEEESEETTTTEECC----
T ss_pred EEEEecCCcchHHHHHHHHHcCCcEE---EecCCCC-CCC---CHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----
Confidence 78888899987543222 12221111 1111110 111 899999999874 6899998888999999997
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhc-CcC-----
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCI-QPG----- 318 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~-~~~----- 318 (470)
+++|.++|++||++||+||+|+.. .. ......+ .+|++ +++|+++|+. ++|++++++++++.+ .+.
T Consensus 146 l~~i~~l~~~~~~~li~D~a~~~~-~~--~~~~~~~--~~d~~~~s~~K~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~ 219 (384)
T 3zrp_A 146 VKDVINKIRKYVELIVVDGVSSVG-AE--EVKAEEW--NVDVYLTASQKALGSAA-GLGLLLLSPKALSILDSQNSIAGY 219 (384)
T ss_dssp HHHHHHHHGGGEEEEEEECTTTTT-TS--CCCTTTT--TCSEEEEETTSTTCCCS-SEEEEEECHHHHHHHHHCCCSCCS
T ss_pred HHHHHHHHHhcCCEEEEECccccc-Cc--ccccccc--CCCEEEecCcccccCCC-ceEEEEECHHHHHHhcCCCCCCcc
Confidence 999999999999999999999722 11 1112222 34665 5669998876 899999999987776 110
Q ss_pred ------------C----ccCCC-CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE--e
Q 012138 319 ------------E----HGSTF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--R 376 (470)
Q Consensus 319 ------------~----~~~t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~--~ 376 (470)
. ....+ +.+...++++.++++.+.+ +.+.++.+++++++.+.|++++.. ..... .
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~ 296 (384)
T 3zrp_A 220 YLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLE---IVARRPES 296 (384)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC---BSCSSGGG
T ss_pred cccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCe---EccCcccc
Confidence 0 22333 4677778877788887654 467788888899999988876211 11110 1
Q ss_pred ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-C--CEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 377 GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-D--TIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~--~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
..+.++++.+.. . +..++.+.|.++||.+.++. . +++|++++..+|++++++++++|+++++ ++..
T Consensus 297 ~~~~~~~~~~~~-~---~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~-~~~~ 365 (384)
T 3zrp_A 297 YSNTVTGVILKV-A---DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLR-KLGE 365 (384)
T ss_dssp BCSSEEEEECSS-S---CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHH-HHTC
T ss_pred cCccEEEEECCC-C---CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHH-HcCC
Confidence 135566666554 2 67889999999999998764 1 7899999888999999999999999999 7653
No 125
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=5.8e-27 Score=228.52 Aligned_cols=314 Identities=14% Similarity=0.122 Sum_probs=220.9
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALK 150 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~ 150 (470)
+.+++|||.++.. +++ .+|.+.+++.+.++.... |..+...++++.++++++. +++++|+|+++++..+++
T Consensus 14 ~~~~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 14 AAAQAVCLAFNEN--PEA-VEPRVQAAIAAAAARINR----YPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCCCCEECSSCCC--CSC-CCHHHHHHHHHHGGGTTS----CCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCCceEeeCCCC--CCC-CCHHHHHHHHHhhhhhcc----CCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence 4567899998854 344 789999999988765432 3345678899999999875 579999999999999988
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEE
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
.+ . |+ .|++..++|++........+. .... .+...+ ..+ |+++|+++ .+++++++
T Consensus 87 ~~-~----------gd-~vl~~~p~~~~~~~~~~~~g~-~~~~---v~~~~~-~~~---d~~~l~~~-----~~~~~v~i 141 (337)
T 3p1t_A 87 EF-S----------SM-RFVTAWPGFDGYRARIAVSGL-RHFE---IGLTDD-LLL---DPNDLAQV-----SRDDCVVL 141 (337)
T ss_dssp HS-T----------TS-EEEEESSSCSHHHHHHTTSCC-EEEE---ECBCTT-SSB---CHHHHTTC-----CTTEEEEE
T ss_pred hc-C----------CC-eEEEeCCCcHHHHHHHHHcCC-EEEE---ecCCCC-CCC---CHHHHHhh-----cCCCEEEE
Confidence 65 2 55 788899998765443322221 1110 010000 111 78888765 15677776
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecH
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADK 309 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~ 309 (470)
..++||+|.++| ++++.++|+++++ +|+||+|.+|+..+... ....+....+.|+||.++ +|+ |+|++++++
T Consensus 142 ~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~~ 214 (337)
T 3p1t_A 142 ANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRSFSKSYGLAGL-RLGALFGPS 214 (337)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEESSSTTCCTTT-CCEEEECCH
T ss_pred eCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEeeCchhccCcch-heEEEEeCH
Confidence 666999999997 8888999999997 55699999876544321 121222223459999998 898 999999999
Q ss_pred HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEecc
Q 012138 310 EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 388 (470)
Q Consensus 310 ~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~ 388 (470)
++++.+... ...++.++++++++.++|+.... +...++..++++++.+.|++++ +....+.|.++++...
T Consensus 215 ~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~- 285 (337)
T 3p1t_A 215 ELIAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLG------YRVASSEANFVLVENA- 285 (337)
T ss_dssp HHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT------CCBCCCSSSEEEEECT-
T ss_pred HHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCc------CEECCCCCeEEEEEcC-
Confidence 999888643 34567888888888877764321 3344555666677777776642 2334567788777543
Q ss_pred CCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 389 TALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+..++.+.|.++||.+.++. ++++|+++. +++++++++++|+++++
T Consensus 286 -----~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 286 -----AGERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -----TTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred -----CHHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 23567888999999998764 589999943 79999999999998765
No 126
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.96 E-value=2.1e-27 Score=237.02 Aligned_cols=330 Identities=12% Similarity=0.026 Sum_probs=216.9
Q ss_pred eEEeccCCcccccCCCCC--HHHHHHHHH-HHHHccc-c--CCCCCCCcHHHHHHHHhhhhC----CC--eEEecCChhH
Q 012138 76 KYLDFLSAYSAVNQGHCH--PKIMKALQE-QAEKLTL-S--SRAFYNDKFPVFAERLTSMFG----YD--MVLPMNTGAE 143 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~--p~v~~a~~~-~~~~~~~-~--~~~~~~~~~~~l~~~l~~~~~----~~--~v~~~~sGte 143 (470)
.++||..|....+.++.+ |.+.+++.+ .++.... . ......++++++++++....+ .+ ++++|+||++
T Consensus 27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~ 106 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSG 106 (397)
T ss_dssp CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHH
Confidence 478888886444555555 899999999 8764221 1 111223345555555544332 46 8999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----C---CHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----G---DITALEK 216 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d~~~Le~ 216 (470)
|++.+++++.... +|+ .|++..++|++........+.. +..+++ + |+++|++
T Consensus 107 a~~~~~~~~~~~~-------~gd-~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~ 165 (397)
T 3fsl_A 107 ALKVGADFLKRYF-------PES-GVWVSDPTWENHVAIFAGAGFE-------------VSTYPWYDEATNGVRFNDLLA 165 (397)
T ss_dssp HHHHHHHHHHHHC-------TTC-CEEEESSCCHHHHHHHHHTTCC-------------EEEECCEETTTTEECHHHHHH
T ss_pred HHHHHHHHHHhcC-------CCC-eEEEeCCCchhHHHHHHHcCCc-------------eEEEeeeeccCCcCcHHHHHH
Confidence 9999977543211 344 7888999998765444333222 123332 2 8999999
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC--Ccccc----ccCCCCcceee
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG--RMLAS----DWEEVRPDMVI 290 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G--~~~~~----~~~~~~pdi~s 290 (470)
+++++.+++++++++.++||+|.++ +.+.+++|.++|++||++||+||+|++|.+.+ ..... +..+....+.|
T Consensus 166 ~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 244 (397)
T 3fsl_A 166 TLKTLQAGSIVLLHPCCHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNS 244 (397)
T ss_dssp HHTTCCTTCEEEECSSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCCEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEec
Confidence 9986545778888777799999999 88999999999999999999999999876552 11111 12222234558
Q ss_pred cccccc-CCCcceeEEEe---cHHHHhhcCcC----CccCCCCCCHHHHHHHHHHHHHH------hh--hhHHHHHHHHH
Q 012138 291 LGKALG-GGVIPVSAVLA---DKEVMLCIQPG----EHGSTFGGNPLASAVAIASLDVI------RD--EKLAERSAHLG 354 (470)
Q Consensus 291 ~sK~l~-gG~~~ig~v~~---~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~~------~~--~~~~~~~~~~~ 354 (470)
|||.++ +|+ |+|++++ ++++++.+... ....+.+.+.++++++.+.++.. .+ +++++++++++
T Consensus 245 ~SK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 245 FSKIFSLYGE-RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp CTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCC-CeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 898 9999974 45555433211 11233445667776666555421 11 45677778888
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+++.+.|+++.... .+....+.+.++.| +.. +...+.+.|.++||.+.|++ ||+++ .+++++|++++
T Consensus 324 ~~l~~~L~~~~~~~--~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~gi~v~~g~----Ris~~-~~~~~~i~~~~ 390 (397)
T 3fsl_A 324 QELVKVLSTEMPER--NFDYLLNQRGMFSY-TGL-----SAAQVDRLREEFGVYLIASG----RMCVA-GLNTANVQRVA 390 (397)
T ss_dssp HHHHHHHHHHCTTS--CCTHHHHCCSSEEE-CCC-----CHHHHHHHHHTTCEECCTTC----EEEGG-GCCTTTHHHHH
T ss_pred HHHHHHHHhcCCCC--CceeecCCceEEEe-cCC-----CHHHHHHHHHhCCEEECCCC----eEEEE-ecCHhhHHHHH
Confidence 88888887763210 12222344555555 222 34556777788899999875 89875 34778899999
Q ss_pred HHHHHHH
Q 012138 435 KALHDVL 441 (470)
Q Consensus 435 ~~l~~~l 441 (470)
++|++++
T Consensus 391 ~~l~~~l 397 (397)
T 3fsl_A 391 KAFAAVM 397 (397)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 9998864
No 127
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=5.8e-27 Score=234.59 Aligned_cols=323 Identities=13% Similarity=0.061 Sum_probs=221.0
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CC-----CCCcHHHHHHHHhhhhCCC--eEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AF-----YNDKFPVFAERLTSMFGYD--MVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~-----~~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~ 145 (470)
+..|+|+.++. +.+|++.+++.++++.....+. .+ ..+...+++++++++++.+ .+++++||++++
T Consensus 26 ~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 46788876552 3689999999999986432211 12 1345678899999998864 799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc---cCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM---SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
+.+++.+.+. . .+|+ .|++..++|++.......+ .+.... +.+..++...+ |+++|++++++
T Consensus 100 ~~~~~~l~~~--~----~~gd-~vi~~~~~~~~~~~~~~~~~~~~g~~v~---~v~~~~~~~~~---d~~~l~~~l~~-- 164 (406)
T 3cai_A 100 SLLAEASSSR--A----GLGY-EVIVSRLDDEANIAPWLRAAHRYGAKVK---WAEVDIETGEL---PTWQWESLISK-- 164 (406)
T ss_dssp HHHHHHTGGG--G----BTTC-EEEEETTSCGGGTHHHHHHHHHHBCEEE---EECCCTTTCCC---CGGGHHHHCCT--
T ss_pred HHHHHHHhhc--c----CCCC-EEEEcCCccHHHHHHHHHHHHhcCCeEE---EEecCcccCCc---CHHHHHHHhCC--
Confidence 9988865210 0 1354 7888888877654332221 121111 11111011112 88999998875
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCc
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVI 300 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~ 300 (470)
++++|++++++||+|.+.| +++|.++|++||++||+||+|+ +|.. .+....++ +|++ +++|.+++
T Consensus 165 -~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~~~--~d~~~~s~~K~~g~--- 231 (406)
T 3cai_A 165 -STRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYR--LLDIRETD--ADVVTVNAHAWGGP--- 231 (406)
T ss_dssp -TEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTC--CCCHHHHC--CSEEEEEGGGGTSC---
T ss_pred -CceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--CCCchhcC--CCEEEeehhhhcCC---
Confidence 7899998888999999997 9999999999999999999997 2211 12222333 4654 67897653
Q ss_pred cee-EEEecHHHHhhcCcCCc---------cCCCCCCHHHHHHHHHHHHHHhh-----------------hhHHHHHHHH
Q 012138 301 PVS-AVLADKEVMLCIQPGEH---------GSTFGGNPLASAVAIASLDVIRD-----------------EKLAERSAHL 353 (470)
Q Consensus 301 ~ig-~v~~~~~~~~~~~~~~~---------~~t~~~~~~~~aaa~a~l~~~~~-----------------~~~~~~~~~~ 353 (470)
++| ++++++++++.+.+... ....+.++.+++++.++++.+.+ +.+.++.+++
T Consensus 232 ~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (406)
T 3cai_A 232 PIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRV 311 (406)
T ss_dssp SCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHH
Confidence 488 99999999888765432 11334678888787788887654 3455666677
Q ss_pred HHHHHHHHHHHHhhCCCceEEEec---cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------------CCEE
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRG---RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------------DTIV 417 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------~~~i 417 (470)
++++.+.|+++ | .+....+ .+.++.+.+.. .+..++.+.|.++||.+.++. .+++
T Consensus 312 ~~~l~~~L~~~----~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~i 382 (406)
T 3cai_A 312 FDYLMVSLRSL----P-LVMLIGRPEAQIPVVSFAVHK----VPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAV 382 (406)
T ss_dssp HHHHHHHHHTC----T-TEEECCCCSSBCSEEEEEETT----BCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCE
T ss_pred HHHHHHHHhcC----C-CeEEcCCccccCCEEEEEECC----cCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeE
Confidence 77777777653 2 2332222 35566666542 257789999999999998753 4789
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 012138 418 RLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 418 R~~~~~~~t~e~i~~~~~~l~~ 439 (470)
|++++..++++++++++++|++
T Consensus 383 Ris~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 383 TVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp EEECCTTCCHHHHHHHHHHHHT
T ss_pred EEEeecCCCHHHHHHHHHHHHH
Confidence 9999988999999999999875
No 128
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=1.6e-27 Score=236.66 Aligned_cols=331 Identities=13% Similarity=0.068 Sum_probs=226.0
Q ss_pred EEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC-CeEEecCChhHHHH
Q 012138 68 SIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY-DMVLPMNTGAEGVE 146 (470)
Q Consensus 68 ~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~v~~~~sGteA~~ 146 (470)
.++|.+++.+.++...+...+.+|..++..+. .++++++++++++. +.++|++||++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-------------------~~~~~~~l~~~~~~~~~v~~~~sgt~a~~ 65 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEV-------------------MNDLLSNLKTVYNAEAAVIIPGSGTYGME 65 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHH-------------------HHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHH-------------------HHHHHHHHHHHhCCCCEEEEcCChhHHHH
Confidence 46788888888887666555667776655532 24555667777765 45888999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc-cCCcccccCCCCCCC---C--eeeecCCCHHHHHHHHHh
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAIRGFGPLLP---G--HLKVDFGDITALEKIFKE 220 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~---~--~~~~~~~d~~~Le~~l~~ 220 (470)
++++.+ . +|+ .||+..++||+.....+.. .+.. ....+.+... + ...+...|+++|++++++
T Consensus 66 ~~~~~~-~---------~gd-~vi~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~ 133 (379)
T 3ke3_A 66 AVARQL-T---------IDE-DCLIIRNGWFSYRWTQILEKGKFA-KSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKE 133 (379)
T ss_dssp HHHHHH-C---------TTC-EEEEEECSHHHHHHHHHHHHHCCS-SEEEEEECEESSCCSSCCCEECCCHHHHHHHHHH
T ss_pred HHHHhC-C---------CCC-eEEEEeCCchhHHHHHHHHHhCCC-CceEEEeccccccccccCCCCCCCHHHHHHHHhh
Confidence 988643 2 355 7888888888865433221 1100 0000000000 0 000112489999999965
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCc
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 300 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~ 300 (470)
. ++++|++..++|++|.+. +.+++++|.++|++||+++|+|++|+ | +..+..+.+++++.+.+++|+++++.
T Consensus 134 ~--~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~~- 205 (379)
T 3ke3_A 134 D--KSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSSTP- 205 (379)
T ss_dssp H--TCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSCC-
T ss_pred c--CCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCCC-
Confidence 3 677888888899999999 78899999999999999999999997 3 33444555676555667779998876
Q ss_pred ceeEEEecHHHHhhcCcCC----------------------ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Q 012138 301 PVSAVLADKEVMLCIQPGE----------------------HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGE 355 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~----------------------~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~ 355 (470)
++|++++++++++.+.+.. ...+++.++..++++.++++.+.+ +++.++.+++++
T Consensus 206 g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~ 285 (379)
T 3ke3_A 206 CAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGN 285 (379)
T ss_dssp CEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 8999999999887765311 011236788888888899998776 467788888999
Q ss_pred HHHHHHHHHHhhCCCceEEEe-ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC---------CCEEEEecCCCC
Q 012138 356 ELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH---------DTIVRLTPPLSI 425 (470)
Q Consensus 356 ~l~~~L~~l~~~~p~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------~~~iR~~~~~~~ 425 (470)
++++.|++++-. .+.... ..+.+..+.++ . ....+.+.|.++||.+.++. .+++|++++..+
T Consensus 286 ~l~~~l~~~g~~---~~~~~~~~~~~i~~~~~~--~---~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~ 357 (379)
T 3ke3_A 286 RVRKVLTDKGIE---SVAAEGFEAPGVVVSYTE--R---DDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLD 357 (379)
T ss_dssp HHHHHHHHTTCC---BSBCTTCBCSSEEEEECS--C---HHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHH
T ss_pred HHHHHHHHcCCE---ecCCccccCceEEEEccC--C---cchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCC
Confidence 999998886322 111100 12223333222 1 22234678889999987763 689999999999
Q ss_pred CHHHHHHHHHHHHHHHhcccC
Q 012138 426 SSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|++||++++++|+++++ ++.
T Consensus 358 t~~di~~~~~~l~~~l~-~~~ 377 (379)
T 3ke3_A 358 KLTDIDGTVERFEKALD-EVL 377 (379)
T ss_dssp HHTCHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999999999998 653
No 129
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.95 E-value=1.1e-27 Score=240.50 Aligned_cols=339 Identities=12% Similarity=0.075 Sum_probs=219.7
Q ss_pred CCeEEeccCCcccccCC--CCCHHHHHHHHH-HHHHccccCCCC-CCCcHHHHHHHHhhhh----C----CCeEEe--cC
Q 012138 74 GNKYLDFLSAYSAVNQG--HCHPKIMKALQE-QAEKLTLSSRAF-YNDKFPVFAERLTSMF----G----YDMVLP--MN 139 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG--~~~p~v~~a~~~-~~~~~~~~~~~~-~~~~~~~l~~~l~~~~----~----~~~v~~--~~ 139 (470)
|+.++||..+....+.+ ..+|.+.+++.+ .++.... ..| ......++.+.+++++ + .++|++ |+
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~ 105 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYN--HEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSL 105 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccc--cCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEecc
Confidence 45678888875422222 256889999988 7652111 111 1122344444444443 2 578999 99
Q ss_pred ChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC-CCCeeeecCCCHHHHHHHH
Q 012138 140 TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGHLKVDFGDITALEKIF 218 (470)
Q Consensus 140 sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~Le~~l 218 (470)
||++|++.+++++.... +|+ .|++..++|++........+..... .+. .++...+ |+++|++++
T Consensus 106 g~~~a~~~~~~~~~~~~-------~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~----v~~~~~~~~~~---d~~~l~~~l 170 (412)
T 1yaa_A 106 SGTGALHISAKFFSKFF-------PDK-LVYLSKPTWANHMAIFENQGLKTAT----YPYWANETKSL---DLNGFLNAI 170 (412)
T ss_dssp HHHHHHHHHHHHHHHHC-------TTC-CEEEEESCCTTHHHHHHTTTCCEEE----EECEETTTTEE---CHHHHHHHH
T ss_pred chHhHHHHHHHHHHHhC-------CCC-EEEEeCCCCccHHHHHHHcCceEEE----EeeecCCCCcc---CHHHHHHHH
Confidence 99999999976554321 354 7888899998865544333221111 000 0001122 899999999
Q ss_pred HhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC---Ccccc-ccCCCCc----c--e
Q 012138 219 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG---RMLAS-DWEEVRP----D--M 288 (470)
Q Consensus 219 ~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G---~~~~~-~~~~~~p----d--i 288 (470)
++++..++++++..++||||.++ +.+++++|.++|++||++||+||+|.+|++.+ ..... +.....+ + +
T Consensus 171 ~~~~~~~~~~~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 249 (412)
T 1yaa_A 171 QKAPEGSIFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVC 249 (412)
T ss_dssp HHSCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEE
T ss_pred HhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEE
Confidence 86432355666455699999999 89999999999999999999999999886654 22112 1111122 2 4
Q ss_pred eeccccccC-CCcceeEEE--e-----cHH----HHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--------hhhHHH
Q 012138 289 VILGKALGG-GVIPVSAVL--A-----DKE----VMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--------DEKLAE 348 (470)
Q Consensus 289 ~s~sK~l~g-G~~~ig~v~--~-----~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--------~~~~~~ 348 (470)
.+|||.+++ |+ |+|+++ + +++ +++.+.......+.+.++++++++.++|+... .+++++
T Consensus 250 ~s~sK~~~~~Gl-riG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1yaa_A 250 QSFAKNAGMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS 328 (412)
T ss_dssp EECTTTSCCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred eccCCCCCCcCC-cceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 489999996 98 999998 7 666 77766543333344568888888888887542 145677
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHH
Q 012138 349 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSN 428 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e 428 (470)
+++++++++.+.|+++... ..+....+.+.++.| +.. +...+...+.++||.+.+ ++||+++. .+++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~gi~v~~----~~Ris~~~-~~~~ 395 (412)
T 1yaa_A 329 RITKMRHALRDHLVKLGTP--GNWDHIVNQCGMFSF-TGL-----TPQMVKRLEETHAVYLVA----SGRASIAG-LNQG 395 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCS--SCCTHHHHCCSSEEE-CCC-----CHHHHHHHHHHHCEECCT----TSEEEGGG-CCTT
T ss_pred HHHHHHHHHHHHHHhhCCC--CCeeeeccCceEEEe-eCC-----CHHHHHHHHHhCCEEecc----CcEEEEcc-CCHh
Confidence 7778888888888776410 012222455656655 222 344565555577999987 47999764 5899
Q ss_pred HHHHHHHHHHHHHhccc
Q 012138 429 ELQEGSKALHDVLELDL 445 (470)
Q Consensus 429 ~i~~~~~~l~~~l~~~~ 445 (470)
++++++++|+++++ .+
T Consensus 396 ~i~~~~~~l~~~~~-~~ 411 (412)
T 1yaa_A 396 NVEYVAKAIDEVVR-FY 411 (412)
T ss_dssp THHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHHH-hh
Confidence 99999999999987 53
No 130
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.95 E-value=2.6e-27 Score=237.39 Aligned_cols=313 Identities=15% Similarity=0.135 Sum_probs=220.8
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC--e-EEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD--M-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~-v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.+|++.+++.+++ ..+... ...+...+++++++++++.+ . +++++||++|++.+++.+.. +|+ .
T Consensus 24 ~~~~v~~a~~~~~--~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~---------~gd-~ 90 (411)
T 3nnk_A 24 ADPRVLRAMSSQL--IGQYDP-AMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIR---------PGD-K 90 (411)
T ss_dssp CCHHHHHHHTSCC--CCTTCH-HHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCC---------TTC-E
T ss_pred CCHHHHHHhhccc--cccccH-HHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcC---------CCC-E
Confidence 5688888876543 111110 11244678889999988643 3 78999999999999998743 454 8
Q ss_pred EEEEccCcccccc-chhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccccCCCccccC
Q 012138 169 IVSCCGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 242 (470)
Q Consensus 169 ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~ 242 (470)
|++..++||+... ......+.. +..++.+ |+++|++++++. ++++|++++++||+|.+.|
T Consensus 91 Vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~ 156 (411)
T 3nnk_A 91 VLVPVFGRFGHLLCEIARRCRAE------------VHTIEVPWGEVFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP 156 (411)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCE------------EEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC
T ss_pred EEEecCCchHHHHHHHHHHcCCe------------EEEEecCCCCCCCHHHHHHHHhhC--CCeEEEEeCCCCCcceecc
Confidence 8888999887422 122222211 1222222 899999999864 6788888888999999997
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCC---
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--- 319 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~--- 319 (470)
+++|.++|++||+++|+||+|+. +. ..+....++.+..+.+++|++.++. ++|++++++++++.+....
T Consensus 157 ----l~~i~~l~~~~~~~li~Dea~~~-~~--~~~~~~~~~~d~~~~s~~K~l~~~~-g~g~~~~~~~~~~~~~~~~~~~ 228 (411)
T 3nnk_A 157 ----LAELGEICRRYDALFYTDATASL-GG--NPLETDVWGLDAVSAGMQKCLGGPS-GTSPITLSARMEEAIRRRKCVE 228 (411)
T ss_dssp ----CTTHHHHHHHHTCEEEEECTTTB-TT--BCCCTTTTTCSEEECCSTTTTCCCS-SEEEEEECHHHHHHHHTTCCCC
T ss_pred ----HHHHHHHHHHcCCEEEEECCccc-CC--cccchhccCCcEEEecCccccCCCC-ceEEEEECHHHHHHHhhccccc
Confidence 89999999999999999999872 11 1122333444333446679888877 8999999999987665321
Q ss_pred ---------------------------------ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Q 012138 320 ---------------------------------HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 320 ---------------------------------~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~ 363 (470)
....++.+..+++++.++++.+.+ +++.++.+++++++.+.|++
T Consensus 229 ~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 308 (411)
T 3nnk_A 229 EGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA 308 (411)
T ss_dssp GGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 012235688888888888887665 36778888889999999887
Q ss_pred HHhhCCCceEE-EeccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEec-CCCCCHHHHHHHHHH
Q 012138 364 IQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKA 436 (470)
Q Consensus 364 l~~~~p~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~-~~~~t~e~i~~~~~~ 436 (470)
++.. .... ....+.++.+.++.. .+..++.+.|+++ ||.+.++ .++++|+++ +..++++++++++++
T Consensus 309 ~g~~---~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~ 382 (411)
T 3nnk_A 309 MGLE---TFGDLKHKMNNVLGVVIPQG---INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSA 382 (411)
T ss_dssp TTCC---BCSCGGGBCSSEEEEECCTT---CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred cCCE---eCCCcccccccEEEEECCCC---CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHH
Confidence 5322 1111 012356666666433 2678899999887 9999865 367999997 778899999999999
Q ss_pred HHHHHhcccC
Q 012138 437 LHDVLELDLP 446 (470)
Q Consensus 437 l~~~l~~~~~ 446 (470)
|+++++ ++.
T Consensus 383 l~~~l~-~~~ 391 (411)
T 3nnk_A 383 LEAVLN-YLK 391 (411)
T ss_dssp HHHHHH-HTT
T ss_pred HHHHHH-HcC
Confidence 999998 764
No 131
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=3.3e-27 Score=233.82 Aligned_cols=310 Identities=15% Similarity=0.136 Sum_probs=209.3
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---e-EEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---M-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~-v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
.+|++.+++.+++.. +.+. ...+...+++++++++++.+ . +++++||++|++.+++.+.. +|+
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~---------~gd- 96 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRTT-EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT---------KKD- 96 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSSH-HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC---------TTC-
T ss_pred CcHHHHHHhcCCCCC--CCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC---------CCC-
Confidence 578898888765421 1111 12245678889999988754 4 55589999999999997754 455
Q ss_pred EEEEEccCccccccc-hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhh
Q 012138 168 IIVSCCGCFHGRTLA-AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 168 ~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
.|++..++|++.... .....+..... .+... ...+ |+++|+++++. ++++|++++++||+|.+.|
T Consensus 97 ~vi~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~-~~~~---d~~~l~~~~~~---~~~~v~~~~~~nptG~~~~---- 162 (376)
T 3f0h_A 97 KVLVIDGGSFGHRFVQLCEIHEIPYVA---LKLEH-GKKL---TKEKLYEYDNQ---NFTGLLVNVDETSTAVLYD---- 162 (376)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTCCEEE---EECCT-TCCC---CHHHHHTTTTS---CCCEEEEESEETTTTEECC----
T ss_pred eEEEEeCChhhHHHHHHHHHcCCceEE---EeCCC-CCCC---CHHHHHHhhcc---CceEEEEecccCCcceecC----
Confidence 666777767664432 11111211110 00000 0111 88999887654 7888998888999999997
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCc------
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH------ 320 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~------ 320 (470)
+++|.++|++||+++|+||+|+.+++. +..+.++++..+.+++|+++++. ++|++++++++++.+.....
T Consensus 163 l~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~~-G~g~~~~~~~~~~~~~~~~~~~~~~~ 238 (376)
T 3f0h_A 163 TMMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACPP-GISVIVLAPRGVERVEKSKVRTMYFD 238 (376)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCCS-SCEEEEECHHHHHHHHTCCCCCSTTC
T ss_pred HHHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCCC-ceEEEEECHHHHHHhhcCCCCceeec
Confidence 999999999999999999999854332 33444555455567889998766 88999999999887754211
Q ss_pred -----------cCCCCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEE
Q 012138 321 -----------GSTFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNA 383 (470)
Q Consensus 321 -----------~~t~~~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~ 383 (470)
++.++.+..+++++.++++.+.+. .+.++.+++++++.+.|+++ + +.... ..+.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~--~~~~~~~~~~~~~~ 312 (376)
T 3f0h_A 239 LKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL----P--FELVSESPANGVTS 312 (376)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS----S--EEECCSSBBTTEEE
T ss_pred HHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----C--CccCccccCceEEE
Confidence 123456666667777888876654 35555555666666655543 1 22111 2233343
Q ss_pred EEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 384 VEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.. .. .+..++.+.|.++ ||.+.++ ..+++|++++..+|++++++++++|+++++
T Consensus 313 ~~~-~~---~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 313 VHP-TT---ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp EEE-SS---SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EeC-CC---CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 432 22 3678899999999 9999765 357899999999999999999999999987
No 132
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.95 E-value=2.4e-26 Score=227.99 Aligned_cols=329 Identities=15% Similarity=0.111 Sum_probs=223.5
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC-C-----CCCcHHHHHHHHhhhhCCC--eEEecCChhHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA-F-----YNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVET 147 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~-----~~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~ 147 (470)
.|||+.++ ++.+|++.+++.++++.....+.. + ......+++++++++++.+ ++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 46776554 357899999999998753111110 0 1233578999999998754 89999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchh--cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI--SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
+++.+..... .+|+ .|++..++|++...... ...+.... +.+..++ ..+ |+++|++++++ ++
T Consensus 77 ~~~~~~~~~~-----~~gd-~vl~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~-~~~---d~~~l~~~i~~---~~ 140 (384)
T 1eg5_A 77 ILKTVAETFE-----KRKR-TIITTPIEHKAVLETMKYLSMKGFKVK---YVPVDSR-GVV---KLEELEKLVDE---DT 140 (384)
T ss_dssp HHHHHHHHTT-----TTCC-EEEECTTSCHHHHHHHHHHHHTTCEEE---ECCBCTT-SCB---CHHHHHHHCCT---TE
T ss_pred HHHhhhhhcc-----CCCC-EEEECCCCchHHHHHHHHHHhcCCEEE---EEccCCC-Ccc---CHHHHHHHhCC---CC
Confidence 9998862100 0354 78889999876543321 12221111 1111111 112 89999999875 78
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcC--cEEEEeccccCCcccCCccccccCCCCcceee--ccccccCCCcc
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEIQSGLARSGRMLASDWEEVRPDMVI--LGKALGGGVIP 301 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g--illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ 301 (470)
++|++++++||+|.++| +++|.++|++|| ++||+||+|+ ++.. .+.+..+ .+|+++ ++|.++. . .
T Consensus 141 ~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~~~--~~di~~~s~sK~~g~-~-G 209 (384)
T 1eg5_A 141 FLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLEKL--EVDYASFSAHKFHGP-K-G 209 (384)
T ss_dssp EEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCTTT--CCSEEEEEGGGGTSC-T-T
T ss_pred eEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCchhc--CCCEEEecHHHhcCC-C-c
Confidence 99998888999999997 999999999999 9999999997 4432 1222222 457764 4597653 1 3
Q ss_pred eeEEEecHHH--HhhcCcCC---ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 302 VSAVLADKEV--MLCIQPGE---HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 302 ig~v~~~~~~--~~~~~~~~---~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+|++++++++ ...+.... ...+++.++++++++.++|+.+.+ +++.++++++++++.+.|++. .+..
T Consensus 210 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~ 283 (384)
T 1eg5_A 210 VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL------GAHI 283 (384)
T ss_dssp CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT------TCEE
T ss_pred eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC------CeEE
Confidence 6899998876 33332211 124567889999988888887543 567777888888888887662 1222
Q ss_pred Eec----cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCH
Q 012138 375 VRG----RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISS 427 (470)
Q Consensus 375 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~ 427 (470)
..+ .+.+..+.+.. .+..++.+.|.++||.+.++. .+++||+++..+|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~ 359 (384)
T 1eg5_A 284 ITPLEISLPNTLSVSFPN----IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359 (384)
T ss_dssp CSCTTSBCTTEEEEECTT----CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCH
T ss_pred eCCcccCCCCEEEEEeCC----CCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCH
Confidence 221 24455554442 257789999999999998742 36899998888999
Q ss_pred HHHHHHHHHHHHHHhcccCCC
Q 012138 428 NELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 428 e~i~~~~~~l~~~l~~~~~~~ 448 (470)
+++++++++|+++++ ++++.
T Consensus 360 ~~i~~~~~~l~~~~~-~~~~~ 379 (384)
T 1eg5_A 360 EEVDYFLKKIEEILS-FLDLT 379 (384)
T ss_dssp HHHHHHHHHHHHHHH-HC---
T ss_pred HHHHHHHHHHHHHHH-HHHhh
Confidence 999999999999999 87543
No 133
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.95 E-value=3.7e-27 Score=240.47 Aligned_cols=341 Identities=17% Similarity=0.134 Sum_probs=233.1
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC----C---CCCCCcHHHHHHHHhhhhCC--CeEEecCChhHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS----R---AFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEG 144 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~----~---~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA 144 (470)
+..|+|. +++|+.++.+.+++.++++.+.... . ....+..+++++++++++|. ++|++++|++++
T Consensus 67 ~~iyld~------~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a 140 (465)
T 3e9k_A 67 NAIYFLG------NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140 (465)
T ss_dssp BCEECBT------TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHH
T ss_pred CeEEecC------CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHH
Confidence 4456653 2356667788888877775432111 1 01224457889999999875 479999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc---ccCCcccc--cCCCCCCCCeeeecCCCHHHHHHHHH
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS---MSCDNEAI--RGFGPLLPGHLKVDFGDITALEKIFK 219 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~d~~~Le~~l~ 219 (470)
++.+++.+.+. + +.++.|++..++||+....... ..+..... ..+.+. .+...+ |+++|+++++
T Consensus 141 l~~~~~~~~~~-----~--~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~-~~~~~~---d~~~l~~~i~ 209 (465)
T 3e9k_A 141 LHLLMLSFFKP-----T--PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPR-EGEETL---RIEDILEVIE 209 (465)
T ss_dssp HHHHHHHHCCC-----C--SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCC-TTCSSC---CHHHHHHHHH
T ss_pred HHHHHHHhccc-----c--CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecC-CCCCcc---CHHHHHHHHH
Confidence 99999877531 1 1244799999999875442221 11111000 000011 011122 7999999998
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGV 299 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~ 299 (470)
++++++++|++++++||+|.+.| +++|.++|++||+++|+|++|+. |.. .+....++++.-+.+++|.+.+|.
T Consensus 210 ~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~~-g~~--~~~~~~~~~D~~~~s~~K~l~~gp 282 (465)
T 3e9k_A 210 KEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHAV-GNV--ELYLHDWGVDFACWCSYKYLNAGA 282 (465)
T ss_dssp HHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT-TTS--CCCHHHHTCCEEEECSSSTTCCCT
T ss_pred hcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhhc-CCc--CCchhhcCCCEEEECcccccccCC
Confidence 54347999999889999999998 99999999999999999999972 111 112223343323346779996443
Q ss_pred cceeEEEecHHHHhhcCcCCcc---C----------------------CCCCCHHHHHHHHHHHHHHhh---hhHHHHHH
Q 012138 300 IPVSAVLADKEVMLCIQPGEHG---S----------------------TFGGNPLASAVAIASLDVIRD---EKLAERSA 351 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~---~----------------------t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~ 351 (470)
.++|++++++++.+.+.+...+ + ..+.++++++++.++++.+.+ +.++++.+
T Consensus 283 ~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~ 362 (465)
T 3e9k_A 283 GGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSV 362 (465)
T ss_dssp TCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 2789999999988776543221 1 015678888888899988765 56888888
Q ss_pred HHHHHHHHHHHHHHhhC------CCceEEEec-----cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEe
Q 012138 352 HLGEELRQHLFKIQQQF------PNYVKEVRG-----RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLT 420 (470)
Q Consensus 352 ~~~~~l~~~L~~l~~~~------p~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~ 420 (470)
++.+++.+.|+++...+ + .+....+ .|.++++.+.. +..++.+.|.++||.+....++++||+
T Consensus 363 ~~~~~l~~~L~~~~~~~~~~~~~~-g~~~~~p~~~~~~g~~~~~~~~~-----~~~~l~~~L~~~Gi~v~~~~~~~iRis 436 (465)
T 3e9k_A 363 LLTGYLEYLIKHNYGKDKAATKKP-VVNIITPSHVEERGCQLTITFSV-----PNKDVFQELEKRGVVCDKRNPNGIRVA 436 (465)
T ss_dssp HHHHHHHHHHHHHCC----------CEEECSCSSGGGBCSCEEEEECC-----TTCCHHHHHHTTTEECEEETTTEEEEB
T ss_pred HHHHHHHHHHHhhccccccccCCC-CeEEeCCCCHhhcccEEEEEecC-----CHHHHHHHHHHCCEEEecCCCCEEEEe
Confidence 88899988887742100 1 2333222 38888887752 355789999999999987667999999
Q ss_pred c-CCCCCHHHHHHHHHHHHHHHhccc
Q 012138 421 P-PLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 421 ~-~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+ ++.+|++||+++++.|+++++ +.
T Consensus 437 ~~~~~~t~edi~~~~~~l~~~l~-~~ 461 (465)
T 3e9k_A 437 PVPLYNSFHDVYKFTNLLTSILD-SA 461 (465)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHT-C-
T ss_pred CcccCCCHHHHHHHHHHHHHHHH-hc
Confidence 9 899999999999999999998 64
No 134
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.95 E-value=2.6e-26 Score=227.32 Aligned_cols=329 Identities=15% Similarity=0.106 Sum_probs=219.3
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC------CCCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF------YNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETA 148 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~a 148 (470)
|+|+.+. ++.+|.+.+++.+++......+... ..+...+++++++++++.+ ++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~ 76 (382)
T 4hvk_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence 6676554 2368999999999987643222111 1234568899999998754 699999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc--cCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM--SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++.+... +.. +|+ .|++..+.|++.......+ .+.... +.+...+ ..+ |+++|++++++ +++
T Consensus 77 ~~~~~~~-~~~----~gd-~vi~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~-~~~---d~~~l~~~i~~---~~~ 140 (382)
T 4hvk_A 77 IIGYAMR-NAR----KGK-HILVSAVEHMSVINPAKFLQKQGFEVE---YIPVGKY-GEV---DVSFIDQKLRD---DTI 140 (382)
T ss_dssp HHHHHHH-HGG----GCC-EEEEETTCCHHHHHHHHHHHHTTCEEE---EECBCTT-SCB---CHHHHHHHCCT---TEE
T ss_pred HHHhhhh-hcC----CCC-EEEECCCCcHHHHHHHHHHHhcCCEEE---EeccCCC-CCc---CHHHHHHHhcc---Cce
Confidence 9977621 001 455 7888888866543322221 111110 0111110 111 89999999875 789
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEE
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVL 306 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~ 306 (470)
+|++++++||+|.+.| +++|.++|++||+ +|+||+|+ ++.. .+.....+.+.-+.+++|.++ +. ++|+++
T Consensus 141 ~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~~~d~~~~s~~K~~g-~~-g~g~~~ 210 (382)
T 4hvk_A 141 LVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKIGADMLTISSNDIYG-PK-GVGALW 210 (382)
T ss_dssp EEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHHTCSEEEEESGGGTS-CT-TCEEEE
T ss_pred EEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhcCCCEEEEeHHHhcC-CC-ceEEEE
Confidence 9998888999999998 9999999999999 99999997 2111 112222333222346779654 33 578888
Q ss_pred ecHHHHhhcCcCCcc-------CCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 307 ADKEVMLCIQPGEHG-------STFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~-------~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
++++. .+.+...+ ...+.++.+++++.++++.+.+ +++.++.+++++++.+.|+++ | .+....+
T Consensus 211 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~ 283 (382)
T 4hvk_A 211 IRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----E-ESYLNGH 283 (382)
T ss_dssp EETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----T-TEEECSC
T ss_pred EcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----C-CeEEeCC
Confidence 77654 33332221 1334677888888888876554 556777777777777777643 2 2332222
Q ss_pred c----ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCHHHH
Q 012138 378 R----GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISSNEL 430 (470)
Q Consensus 378 ~----g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~e~i 430 (470)
. +.++.+.+.. .+..++.+.|.++||.+.++. .+++|++++..+|++++
T Consensus 284 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i 359 (382)
T 4hvk_A 284 PEKRLPNNVNVRFSY----IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDV 359 (382)
T ss_dssp SSSBCTTEEEEEETT----CCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHH
T ss_pred ccccCCCEEEEEECC----CCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHH
Confidence 2 2455555542 257889999999999998763 58999999988999999
Q ss_pred HHHHHHHHHHHhcccCCCC
Q 012138 431 QEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 431 ~~~~~~l~~~l~~~~~~~~ 449 (470)
++++++|+++++ ++.+..
T Consensus 360 ~~~~~~l~~~~~-~~~~~~ 377 (382)
T 4hvk_A 360 DRLLEVLPGVIE-RLRSMS 377 (382)
T ss_dssp HHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHH-HHHhhc
Confidence 999999999998 876543
No 135
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.95 E-value=3.2e-26 Score=227.02 Aligned_cols=327 Identities=15% Similarity=0.097 Sum_probs=219.9
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC-CC-----CCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA-FY-----NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETA 148 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~-----~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~a 148 (470)
|+|+.++ ++.+|++++++.+++......+.. +. .+...+++++++++++.+ ++++|+||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 6777655 357899999999998763211111 11 235678899999999865 899999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
++.+..+ +.. +|+ .|++..++|++.......+.. .+....+.+...+ .. .|+++|++++++ ++++|
T Consensus 77 ~~~l~~~-~~~----~gd-~Vl~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~-~~---~d~~~l~~~i~~---~~~~v 142 (382)
T 4eb5_A 77 IIGYAMR-NAR----KGK-HILVSAVEHMSVINPAKFLQK-QGFEVEYIPVGKY-GE---VDVSFIDQKLRD---DTILV 142 (382)
T ss_dssp HHHHHHH-HGG----GCC-EEEEETTCCHHHHHHHHHHTT-TTCEEEEECBCTT-SC---BCHHHHHHHCCT---TEEEE
T ss_pred HHHHHhh-ccC----CCC-EEEECCCcchHHHHHHHHHHh-CCcEEEEeccCCC-Cc---cCHHHHHHHhcC---CCeEE
Confidence 9988621 001 355 788888887654333221110 0111101111111 11 289999998875 78899
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEE
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVL 306 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~ 306 (470)
++++++||+|.+.| +++|.++|++||++ |+||+|+ ++.. .+....+ .+|++ +++|.++. . ++|+++
T Consensus 143 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~--~~~~~~~--~~di~~~s~sK~~g~-~-g~G~~~ 210 (382)
T 4eb5_A 143 SVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQI--EVDVEKI--GADMLTISSNDIYGP-K-GVGALW 210 (382)
T ss_dssp ECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTB--CCCHHHH--TCSEEEEETGGGTCC-S-SCEEEE
T ss_pred EEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCc--ccCcccc--CCCEEEeehHHhcCC-C-ceEEEE
Confidence 98888999999997 99999999999999 9999997 4321 1112222 34655 67797542 2 478888
Q ss_pred ecHHHHhhcCcCC-------ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 307 ADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 307 ~~~~~~~~~~~~~-------~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
++++. .+.+.. .....+.++..++++.++++.+.+ +.+.++.+++++++.+.|+++ | .+....+
T Consensus 211 ~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~ 283 (382)
T 4eb5_A 211 IRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----E-ESYLNGH 283 (382)
T ss_dssp EETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----T-TEEECSC
T ss_pred Ecccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC----C-CeEEeCC
Confidence 87763 122211 112334677777777788887654 456667777777777777653 2 2333222
Q ss_pred ----cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCHHHH
Q 012138 378 ----RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISSNEL 430 (470)
Q Consensus 378 ----~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~e~i 430 (470)
.+.++.+.+.. .+..++.+.|.++||.+.++. .+++|++++..+|++++
T Consensus 284 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 359 (382)
T 4eb5_A 284 PEKRLPNNVNVRFSY----IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDV 359 (382)
T ss_dssp SSSBCTTEEEEEETT----SCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHH
T ss_pred cccCCCCEEEEEeCC----cCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHH
Confidence 25566676642 257789999999999998753 47999998888899999
Q ss_pred HHHHHHHHHHHhcccCC
Q 012138 431 QEGSKALHDVLELDLPK 447 (470)
Q Consensus 431 ~~~~~~l~~~l~~~~~~ 447 (470)
++++++|+++++ ++++
T Consensus 360 ~~~~~~l~~~~~-~~~~ 375 (382)
T 4eb5_A 360 DRLLEVLPGVIE-RLRS 375 (382)
T ss_dssp HHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHH-HHHH
Confidence 999999999998 7765
No 136
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=1.8e-26 Score=235.50 Aligned_cols=350 Identities=15% Similarity=0.132 Sum_probs=214.2
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~ 152 (470)
.|+.||||.++... +.+.+++.+++...... ....+...+++++++++++.+++++|+||++|++.+++++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~~--y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~ 111 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDEA--YAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL 111 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCCC--SSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcccc--cccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHH
Confidence 36789999877543 67778877776543211 1123456789999999999999999999999999999988
Q ss_pred HHhchhcccCCCCCc--EEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC---CCHHHHHHHHHhcC-CCeE
Q 012138 153 RKWGYVKKKFSIDEA--IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF---GDITALEKIFKESG-DQIA 226 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~--~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~Le~~l~~~~-~~~~ 226 (470)
+.+... +|+. .||+. ..+++.+...+...+............+.....++ .|+++|++++++++ ++++
T Consensus 112 ~~~~~~-----~Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~ 185 (467)
T 1ax4_A 112 LKYKQK-----EGKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIV 185 (467)
T ss_dssp HHHHHH-----TTCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEE
T ss_pred HHhhcc-----CCCccceEEEe-ccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCee
Confidence 752110 2554 14444 33234434343333321111000000000000111 18999999998642 3689
Q ss_pred EEEEccccCCC-ccccCChhhHHHHHHHHHhcCcEEEEeccccC---C-------cccCCccccccCC----CCccee--
Q 012138 227 GFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEIQSG---L-------ARSGRMLASDWEE----VRPDMV-- 289 (470)
Q Consensus 227 ~vi~epi~n~~-G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g---~-------g~~G~~~~~~~~~----~~pdi~-- 289 (470)
+|++++++||+ |.++ +.+++++|+++|++||++||+||+|.. + +..|... ...+ ..+|++
T Consensus 186 ~vi~~~~~np~gG~~~-~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~ 262 (467)
T 1ax4_A 186 AIVSTVTCNSAGGQPV-SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATI--KEVIFDMYKYADALTM 262 (467)
T ss_dssp EEEEESSBTTTTSBCC-CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCH--HHHHHHHGGGCSEEEE
T ss_pred EEEEeccccCCCccCC-ChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCch--hhhhhhhccccceEEE
Confidence 99999999999 7777 899999999999999999999998762 1 2222110 0000 113555
Q ss_pred eccccccCCCccee-EEEec-H-HHHhhcCcC----CccCCCCCCHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012138 290 ILGKALGGGVIPVS-AVLAD-K-EVMLCIQPG----EHGSTFGGNPLAS-AVAIASLDVIRDEKLAERSAHLGEELRQHL 361 (470)
Q Consensus 290 s~sK~l~gG~~~ig-~v~~~-~-~~~~~~~~~----~~~~t~~~~~~~~-aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L 361 (470)
+++|++ |. ++| +++++ + ++++.+... ....+++..+..+ +++.++++.+.+++..++..++++++.+.|
T Consensus 263 s~sK~~--g~-~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L 339 (467)
T 1ax4_A 263 SAKKDP--LL-NIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL 339 (467)
T ss_dssp ETTSTT--CC-SSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred eccccC--CC-CcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 556655 44 654 45566 5 777665421 1123444444333 333335665444345555567778888888
Q ss_pred HHHHhhCCCceEEEeccceeEEEEec-----cCCCchhHHHHHHHH-HHcCceecc-C----------C------CCEEE
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNAVEFD-----KTALPVSAYDICLKM-KERGILAKP-T----------H------DTIVR 418 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~l-~~~Gv~~~~-~----------~------~~~iR 418 (470)
++. .++ .+ .+..|.++++.+. ....+.+..++++.| .++||.+.+ + + .+++|
T Consensus 340 ~~~--~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iR 414 (467)
T 1ax4_A 340 REA--GIP-IQ--YPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMR 414 (467)
T ss_dssp HHT--TCC-BC--SSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEE
T ss_pred HhC--CCC-cc--cCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEE
Confidence 762 221 21 1233444555411 110012577899999 888999876 2 1 27999
Q ss_pred EecC-CCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 419 LTPP-LSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 419 ~~~~-~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
|+++ ..+|++++++++++|.++++ +++++.
T Consensus 415 ls~~~~~~t~e~i~~~~~~l~~~~~-~~~~~~ 445 (467)
T 1ax4_A 415 LTIARRVYTNDHMDYIADALIGLKE-KFATLK 445 (467)
T ss_dssp EECCTTSSCHHHHHHHHHHHHTTHH-HHTTCC
T ss_pred EecccccCCHHHHHHHHHHHHHHHH-hhhcCC
Confidence 9998 45899999999999999998 765543
No 137
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=8.3e-27 Score=233.07 Aligned_cols=288 Identities=11% Similarity=0.055 Sum_probs=201.0
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh---cccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI---SMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~---~~~~~~ 190 (470)
+..+...++++++++++|.+.+++++||++|++.+++.+.. +|+ .|++..++|++...... ...+
T Consensus 61 ~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~---------~gd-~vi~~~~~~~~~~~~~~~~~~~~g-- 128 (398)
T 2rfv_A 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQ---------QGD-HIVSASAIYGCTHAFLSHSMPKFG-- 128 (398)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESSSCHHHHHHHHTHHHHTT--
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEcCCCcccHHHHHHHHHHHcC--
Confidence 34667889999999999988989999999999999997743 454 78888999876543321 1111
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
..+..++.+|+++|++++++ ++++|++++++||+|.+.| +++|.++|++||+++|+||+|+.+
T Consensus 129 ----------~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~ 191 (398)
T 2rfv_A 129 ----------INVRFVDAAKPEEIRAAMRP---ETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP 191 (398)
T ss_dssp ----------CEEEEECTTSHHHHHHHCCT---TEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred ----------CEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 11356667799999998875 7899999999999999997 999999999999999999999833
Q ss_pred cccCCccccccCCCCcceeecccccc-CCCcce-eEEEecHHHHh-hcCcCCccC-CCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 271 ARSGRMLASDWEEVRPDMVILGKALG-GGVIPV-SAVLADKEVML-CIQPGEHGS-TFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~i-g~v~~~~~~~~-~~~~~~~~~-t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
.. +... .++.+..+.+++|.++ +|. |+ |++++++++++ .+....... +.+.+++.++++.++++.+. ..
T Consensus 192 ~~-~~~~---~~~~di~~~s~sK~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 264 (398)
T 2rfv_A 192 YC-QQPL---QLGADIVVHSVTKYINGHGD-VIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG--IR 264 (398)
T ss_dssp TT-CCGG---GGTCSEEEEETTTTTTCSSC-CCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH--HH
T ss_pred cc-CCch---hhCCcEEEEeCcccccCCCC-ceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH--HH
Confidence 21 2221 2343334468999997 476 88 99999998876 555443444 56788999998888886542 23
Q ss_pred HHHHHHHHHHHHHHHHHHH----------hhCCCceEEE----eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC
Q 012138 347 AERSAHLGEELRQHLFKIQ----------QQFPNYVKEV----RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT 412 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~----------~~~p~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 412 (470)
.++..++...+.+.|++.. ..+| .+... ++.|.+++|.+.... .....+.+.+...|+.+.++
T Consensus 265 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p-~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~l~~~~~~~~i~~~~G 341 (398)
T 2rfv_A 265 MERHCENALKIARFLEGHPSITRVYYPGLSSHP-QYELGQRQMSLPGGIISFEIAGGL--EAGRRMINSVELCLLAVSLG 341 (398)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTST-THHHHHHHCSSCCSEEEEEETTHH--HHHHHHHTTCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc-cHHHHHhhCCCCceEEEEEEcCCH--HHHHHHHHhCCcceeccCCC
Confidence 3444455555555554421 0011 11111 246888888775311 13444555555556665443
Q ss_pred -------------------------C--CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 413 -------------------------H--DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 413 -------------------------~--~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+ .+.+||+++...+++++++++++|+++
T Consensus 342 ~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 342 DTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 1 579999999999999999999888764
No 138
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.95 E-value=6.6e-27 Score=229.89 Aligned_cols=321 Identities=12% Similarity=0.075 Sum_probs=212.7
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARK 154 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~ 154 (470)
+++|.++. .++.+|++.+++.+++..+.. ..+..+.+.++++++++++|. +++++++||++|++.+++.++.
T Consensus 15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~~~~--~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 88 (359)
T 1svv_A 15 PYSFVNDY----SVGMHPKILDLMARDNMTQHA--GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR 88 (359)
T ss_dssp CEECSCSC----SSCCCHHHHHHHHHHTTCCCC--STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred eEEecCCC----cCCCCHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence 56776543 346899999999998864322 223466788999999998864 5799999999999999998854
Q ss_pred hchhcccCCCCCcEEEEEccCccccccc-hhcccCCcccccCCCCCCCCeeeecCC----CHHHHHHHHHhc----CCCe
Q 012138 155 WGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNEAIRGFGPLLPGHLKVDFG----DITALEKIFKES----GDQI 225 (470)
Q Consensus 155 ~~~~~~~~~~g~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~Le~~l~~~----~~~~ 225 (470)
+|+ .|++..++|++.... .....+.. +..++.+ |+++|++++++. +.++
T Consensus 89 ---------~gd-~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~ 146 (359)
T 1svv_A 89 ---------PWE-AVIATQLGHISTHETGAIEATGHK------------VVTAPCPDGKLRVADIESALHENRSEHMVIP 146 (359)
T ss_dssp ---------TTE-EEEEETTSHHHHSSTTHHHHTTCC------------EEEECCTTSCCCHHHHHHHHHHSCSTTSCEE
T ss_pred ---------CCC-EEEEcccchHHHHHHHHHhcCCCe------------eEEEeCCCCeecHHHHHHHHHHHHhccCCCc
Confidence 344 888899998776543 12222211 2233332 699999999873 1238
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC--cccCCccccccCC--CCcceeec--cccccCCC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL--ARSGRMLASDWEE--VRPDMVIL--GKALGGGV 299 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~--g~~G~~~~~~~~~--~~pdi~s~--sK~l~gG~ 299 (470)
++|+++++ ||+|.++ +.+++++|.++|++||++||+||+|.+| +..+.. ....+ ..+|++++ +|. ||.
T Consensus 147 ~~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~~K~--g~~ 220 (359)
T 1svv_A 147 KLVYISNT-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDMFYIGATKA--GGM 220 (359)
T ss_dssp EEEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSEEEEECTTT--TCS
T ss_pred eEEEEEcC-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCEEEEecccC--CCC
Confidence 89998886 7999999 7899999999999999999999999654 333321 11111 13466654 564 333
Q ss_pred cceeEEEecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 300 IPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
.++|++++++++++.+.... .+.+++.+....+++.+.++...-+++.++++++++++.+.| +.. .+....+
T Consensus 221 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~-----~~~~~~~ 294 (359)
T 1svv_A 221 FGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EAC-----GIRLAWP 294 (359)
T ss_dssp SCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHT-----TCCBSSC
T ss_pred CceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccC-----CeEEccC
Confidence 37789999998877765431 333344333333333222221111456777888888888888 431 1222223
Q ss_pred cceeEEEEeccCCCchhHHHHHHHHHHc-Cceecc---CCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 378 RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKP---THDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~---~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.++.| +.. ..++++.|.++ ||.+.+ ...+++||++++.++++++++++++|+++++ ++
T Consensus 295 ~~~~~~~-~~~------~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~ 358 (359)
T 1svv_A 295 SASNQLF-PIL------ENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVA-ST 358 (359)
T ss_dssp CSSSEEC-BEE------EHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC-----
T ss_pred CccceEE-EEc------CHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHh-cc
Confidence 3444333 221 14788999999 999853 2467899999999999999999999999887 53
No 139
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.95 E-value=1.5e-27 Score=246.78 Aligned_cols=332 Identities=11% Similarity=0.100 Sum_probs=210.6
Q ss_pred CCCCCHHHHHHHHHHHHHcccc-CCCCCCCcHHHHHHHHhhhh-C------CCeEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 89 QGHCHPKIMKALQEQAEKLTLS-SRAFYNDKFPVFAERLTSMF-G------YDMVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 89 lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~-~------~~~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
.++.+|++++++.+++....++ +.....++++.+++++.+.. + .+++++|+||++|+..+++.+.......
T Consensus 113 ~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~- 191 (533)
T 3f6t_A 113 LGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLK- 191 (533)
T ss_dssp TCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSC-
T ss_pred CCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccC-
Confidence 3446788998888888654433 22233455667777775552 2 2689999999999999998642211111
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC---CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCC
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL---PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEA 237 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~ 237 (470)
+|+ .|++..++|++.............. .+.. .+...+ |+++|+++++. ++++|+++.++||+
T Consensus 192 ---~gd-~Viv~~p~~~~~~~~~~~~g~~~~~----v~~~~~~~~~~~~---d~~~l~~~l~~---~~k~v~l~~p~NPt 257 (533)
T 3f6t_A 192 ---KGD-KIAINEPIFTPYLRIPELKDYELVE----VDLHSYEKNDWEI---EPNEIEKLKDP---SIKALIVVNPTNPT 257 (533)
T ss_dssp ---TTC-EEEEESSCCHHHHTSGGGGGSEEEE----ECCCEETTTTSEE---CHHHHHHHSCT---TEEEEEEESSCTTT
T ss_pred ---CcC-EEEEcCCCcHHHHHHHHHcCCeEEE----EEecCCcccCCCC---CHHHHHHHhCC---CCeEEEEeCCCCCC
Confidence 344 8889999987654433322221111 1110 011222 79999998865 78888865669999
Q ss_pred ccccCChhhHHHHHHHHH-hcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecHH-----
Q 012138 238 GVIIPPDGYLKAVRDLCS-KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKE----- 310 (470)
Q Consensus 238 G~~~~~~~~l~~l~~l~~-~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~----- 310 (470)
|.++ +.+.+++|.++|+ +||+++|+||+|++|...+........+....+.||||.++ +|+ |+|+++++++
T Consensus 258 G~~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l~~~~~~~~~~ 335 (533)
T 3f6t_A 258 SKEF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW-RLGVIALNEKNVFDD 335 (533)
T ss_dssp CBCC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG-CEEEEEEESSCHHHH
T ss_pred cccc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCccc-ceEEEEECcHHHHHH
Confidence 9999 8899999999999 69999999999998765433221111223345669999998 898 9999999876
Q ss_pred HHhhc--------------------------------CcCCccCCCCCCHHHHHHH-HHHHHHHh---------h--hhH
Q 012138 311 VMLCI--------------------------------QPGEHGSTFGGNPLASAVA-IASLDVIR---------D--EKL 346 (470)
Q Consensus 311 ~~~~~--------------------------------~~~~~~~t~~~~~~~~aaa-~a~l~~~~---------~--~~~ 346 (470)
+++.+ .......+.+.++++++++ ..++..+. + +.+
T Consensus 336 li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~ 415 (533)
T 3f6t_A 336 NIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIA 415 (533)
T ss_dssp HHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHH
T ss_pred HHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 54443 2233344556666666652 11233332 1 335
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE-EeccCC---Cc----------hhHHHHHHHHH-HcCceecc
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV-EFDKTA---LP----------VSAYDICLKMK-ERGILAKP 411 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~-~~~~~~---~~----------~~~~~~~~~l~-~~Gv~~~~ 411 (470)
++.++++.+.+.+.|. .+ +....+.|.++.| .+.... .+ .+..+++.++. ++||.+.|
T Consensus 416 ~~~~~~r~~~l~~~L~-----~~--~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~p 488 (533)
T 3f6t_A 416 RKLVSERYDQLHDAMQ-----AP--KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVD 488 (533)
T ss_dssp HHHHHHHHHHHHHHHT-----CC--CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCT
T ss_pred HHHHHHHHHHHHHhcC-----CC--ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeC
Confidence 5556666666666653 21 2222345555444 332100 00 13445666655 66999988
Q ss_pred CC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 412 TH-----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 412 ~~-----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+. .+++||++. .++++++++++++|.++++ ++.
T Consensus 489 g~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~-~~~ 526 (533)
T 3f6t_A 489 GVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLK-EYY 526 (533)
T ss_dssp TEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHH-HHH
T ss_pred CcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHH-HHH
Confidence 63 689999963 2689999999999999998 754
No 140
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.95 E-value=2.4e-26 Score=229.06 Aligned_cols=331 Identities=11% Similarity=0.069 Sum_probs=221.7
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETA 148 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~a 148 (470)
.+|+.|++..+. . ..+|++.+++.+++... . .....+...+++++++++++.+ ++++++||++|++.+
T Consensus 16 ~~~~~~~~~~g~---~---~~~~~v~~a~~~~~~~~--~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 16 VTPNKLLMGPGP---S---NAPQRVLDAMSRPILGH--L-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCCCCEECSSSC---C---CCCHHHHHHTTSCCCCT--T-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred CCCCeEEecCCC---C---CCCHHHHHHHHhhhccC--C-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 345666553332 1 26789999887765421 1 1112345678899999998753 699999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchh-cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
++.+.. +|+ .|++..++|++...... ...+.... +.+...+ . ..|+++|++++++. ++++
T Consensus 87 ~~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~-~---~~d~~~l~~~i~~~--~~~~ 147 (393)
T 2huf_A 87 LCNLLE---------DGD-VILIGHTGHWGDRSADMATRYGADVR---VVKSKVG-Q---SLSLDEIRDALLIH--KPSV 147 (393)
T ss_dssp HHHHCC---------TTC-EEEEEESSHHHHHHHHHHHHTTCEEE---EEECCTT-C---CCCHHHHHHHHHHH--CCSE
T ss_pred HHHHhC---------CCC-EEEEECCCcchHHHHHHHHHcCCeeE---EEeCCCC-C---CCCHHHHHHHHhcc--CCcE
Confidence 998743 454 78888888887421111 11111111 0111111 1 13899999999763 5678
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEE
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAV 305 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v 305 (470)
|++++++||+|.+.| +++|.++|++||++||+||+|+ ++.. .+....+ .+|++ +++|+++|+. ++|++
T Consensus 148 v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~sK~l~g~~-G~G~~ 217 (393)
T 2huf_A 148 LFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDRW--EIDAMYTGSQKVLGAPP-GITPV 217 (393)
T ss_dssp EEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTTT--TCSEEECCSSSTTCCCS-SCEEE
T ss_pred EEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhhc--CccEEEECCCcccccCC-CeEEE
Confidence 887777999999997 8999999999999999999986 3322 1222222 35666 5569887665 77999
Q ss_pred EecHHHHhhcCcCC----------------------ccCC-CCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Q 012138 306 LADKEVMLCIQPGE----------------------HGST-FGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQ 359 (470)
Q Consensus 306 ~~~~~~~~~~~~~~----------------------~~~t-~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~ 359 (470)
++++++++.+.... ...+ .+.+..+++++.++++.+.+ +.+.++.+++++++.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 297 (393)
T 2huf_A 218 SFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYR 297 (393)
T ss_dssp EECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 99999888764320 0112 23567777777778887643 4577788888899998
Q ss_pred HHHHHHhhCCCceEEEe-ccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEec-CCCCCHHHHHH
Q 012138 360 HLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQE 432 (470)
Q Consensus 360 ~L~~l~~~~p~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~-~~~~t~e~i~~ 432 (470)
.|++++.. .+.... ..+.++.+.+... .+..++++.|.++ ||.+.++ ..+++|+++ +...+++++++
T Consensus 298 ~L~~~g~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~ 371 (393)
T 2huf_A 298 GLQDAGFE---LYADPKDRLSTVTTIKVPQG---VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDR 371 (393)
T ss_dssp HHHHTTCC---BSSCGGGBCTTEEEEECCTT---CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHH
T ss_pred HHHHcCCe---eccCccccCCcEEEEEcCCC---CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHH
Confidence 88875211 111100 1234666655422 2577899999876 9999876 368999998 55678999999
Q ss_pred HHHHHHHHHhcccCC
Q 012138 433 GSKALHDVLELDLPK 447 (470)
Q Consensus 433 ~~~~l~~~l~~~~~~ 447 (470)
++++|+++++ +++.
T Consensus 372 ~~~~l~~~~~-~~~~ 385 (393)
T 2huf_A 372 VLQVFQEAVA-AVKP 385 (393)
T ss_dssp HHHHHHHHHH-HHCC
T ss_pred HHHHHHHHHH-HcCC
Confidence 9999999998 7654
No 141
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.95 E-value=5.6e-26 Score=234.63 Aligned_cols=326 Identities=17% Similarity=0.103 Sum_probs=216.8
Q ss_pred CCCHHHHHHHHHHHHHccccCC-CC-----CCCcHHHHHHHHhhhhCCC----eE--EecCChhHHHHHHHHHHHHhchh
Q 012138 91 HCHPKIMKALQEQAEKLTLSSR-AF-----YNDKFPVFAERLTSMFGYD----MV--LPMNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~-~~-----~~~~~~~l~~~l~~~~~~~----~v--~~~~sGteA~~~al~~~~~~~~~ 158 (470)
+.++.+.+++.+++......+. .+ ......++++++++++|.+ .+ ++++||++|++.++++++.++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~ 186 (514)
T 3mad_A 107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA 186 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence 3567787777777764332211 11 1123456778888888865 67 99999999999999999875432
Q ss_pred cccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccc
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPI 233 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi 233 (470)
.+| ..++.|++..++|++..... ...+.. +..++.+ |+++|++++++ ++++|+++++
T Consensus 187 ~~g--~~~d~Vi~~~~~~~~~~~~~-~~~G~~------------v~~v~~~~~~~~d~~~Le~~i~~---~~~~v~~~~~ 248 (514)
T 3mad_A 187 TKG--ITAPEAVVPVSAHAAFDKAA-QYFGIK------------LVRTPLDADYRADVAAMREAITP---NTVVVAGSAP 248 (514)
T ss_dssp HHC--CSSCEEEEETTSCTHHHHHH-HHHTCE------------EEEECBCTTSCBCHHHHHHHCCT---TEEEEEEETT
T ss_pred hcC--CCCCeEEEeCccchHHHHHH-HHcCCe------------eEEeeeCCCCCCCHHHHHHHhcc---CCEEEEEeCC
Confidence 222 12248888888876543332 222211 1233332 89999999976 7899998888
Q ss_pred cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc-----ccCC---ccccccCCCCcceeeccccccCCCcceeEE
Q 012138 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA-----RSGR---MLASDWEEVRPDMVILGKALGGGVIPVSAV 305 (470)
Q Consensus 234 ~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g-----~~G~---~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v 305 (470)
+||+|.+.| +++|.++|++||++||+||+|+++. +.|. .+.....+++..+.+++|.+.+|. ++|++
T Consensus 249 ~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~-~~g~~ 323 (514)
T 3mad_A 249 GYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAK-GTSVI 323 (514)
T ss_dssp CTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCS-SCEEE
T ss_pred CCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCC-CeEEE
Confidence 999999997 9999999999999999999999763 3343 333445565444456779988887 99999
Q ss_pred EecHHHHhhcCcCC----c-----cC--CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 012138 306 LADKEVMLCIQPGE----H-----GS--TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNY 371 (470)
Q Consensus 306 ~~~~~~~~~~~~~~----~-----~~--t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~ 371 (470)
+++++......... . .. ..+.+....+++.++++.+.. +++.++.+++++++.+.|+++ | .
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g 398 (514)
T 3mad_A 324 LYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI----P-S 398 (514)
T ss_dssp EESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----T-T
T ss_pred EEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----C-C
Confidence 98776654432110 0 00 112233334444555555443 457777788888888888763 2 2
Q ss_pred eEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 372 VKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-HDTIVRLTPP-LSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 372 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-~~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
+..+.....++++.... .+..++.+.|.++||.+... .++.+|++++ ...+++++++++++|+++++ ++.+..
T Consensus 399 ~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~-~~~~~~ 473 (514)
T 3mad_A 399 LKILGDPLWVIAVASDE----LNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA-QVRAHP 473 (514)
T ss_dssp CEESSCCSSEEEEECSS----SCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH-HHHHCT
T ss_pred eEEeCCCeEEEEEeCCC----CCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH-HHHhCC
Confidence 33333333455554322 26788999999999988432 2678999986 44567999999999999998 876543
No 142
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.95 E-value=2.5e-26 Score=228.83 Aligned_cols=323 Identities=13% Similarity=0.106 Sum_probs=223.7
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~ 152 (470)
..|+|..+. ++.+|.+.+++.+++.. +. .....+...+++++++++++. +++++|+||++|++.+++.+
T Consensus 9 ~~yl~~~~~------~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~ 79 (392)
T 2z9v_A 9 PVITLTAGP------VNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL 79 (392)
T ss_dssp CSEECSSSC------CCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH
T ss_pred cceeecCCC------cCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh
Confidence 457775422 34789999988776543 11 001123457889999998875 58999999999999999987
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchh-cccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeE
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIA 226 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~ 226 (470)
.. +|+ .|++..++|++.....+ ...+.. +..++. .|+++|++++++. ++++
T Consensus 80 ~~---------~gd-~Vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~-~~~~ 136 (392)
T 2z9v_A 80 IS---------PDD-VVLNLASGVYGKGFGYWAKRYSPH------------LLEIEVPYNEAIDPQAVADMLKAH-PEIT 136 (392)
T ss_dssp CC---------TTC-CEEEEESSHHHHHHHHHHHHHCSC------------EEEEECCTTSCCCHHHHHHHHHHC-TTCC
T ss_pred cC---------CCC-EEEEecCCcccHHHHHHHHHcCCc------------eEEeeCCCCCCCCHHHHHHHHhcC-CCCc
Confidence 43 454 78888888876531111 111111 112221 2899999999642 2678
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeE
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSA 304 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~ 304 (470)
+|++++++||+|.+.| +++|.++|++||+++|+||+|+ ++.. .+....++ +|++ +++|+++|+. ++|+
T Consensus 137 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~~~--~d~~~~s~sK~~~~~~-g~G~ 206 (392)
T 2z9v_A 137 VVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM--KTHPEDCK--ADIYVTGPNKCLGAPP-GLTM 206 (392)
T ss_dssp EEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--SCCGGGGT--CSEEEECSSSTTCCCS-CCEE
T ss_pred EEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc--cccccccc--ceEEEecCcccccCCC-ceeE
Confidence 8888888999999997 9999999999999999999997 3221 11222233 4655 5679888776 7899
Q ss_pred EEecHHHHhhcCcCC--------------------ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Q 012138 305 VLADKEVMLCIQPGE--------------------HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 305 v~~~~~~~~~~~~~~--------------------~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L 361 (470)
+++++++++.++... .....+.++.+++++.++++.+.+ +.+.++++++++++.+.|
T Consensus 207 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 207 MGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp EEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 999999877664210 111234677777777888887654 356788888889998888
Q ss_pred HHHHhhCCCceEEE--eccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCC----CCEEEEec-CCCCCHHHHHHH
Q 012138 362 FKIQQQFPNYVKEV--RGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTH----DTIVRLTP-PLSISSNELQEG 433 (470)
Q Consensus 362 ~~l~~~~p~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~iR~~~-~~~~t~e~i~~~ 433 (470)
++++ +. ..... ...+.++++.++.. .+..++++.|.++ ||.+.++. .+++|+++ +..+++++++++
T Consensus 287 ~~~g--~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~ 360 (392)
T 2z9v_A 287 TAMG--LS-VWAASDSIASPTTTAVRTPDG---VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAA 360 (392)
T ss_dssp HHTT--CC-BSSSSGGGBCTTEEEEECCTT---CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred HHcC--Ce-eccCCccccCCceEEEECCCC---CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHH
Confidence 8752 11 11100 01456666766432 2578899999998 99998763 68999995 437899999999
Q ss_pred HHHHHHHHhcccC
Q 012138 434 SKALHDVLELDLP 446 (470)
Q Consensus 434 ~~~l~~~l~~~~~ 446 (470)
+++|+++++ ++.
T Consensus 361 ~~~l~~~~~-~~~ 372 (392)
T 2z9v_A 361 LTALGGAMN-AAG 372 (392)
T ss_dssp HHHHHHHHH-HTT
T ss_pred HHHHHHHHH-HcC
Confidence 999999998 764
No 143
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.95 E-value=4.7e-26 Score=228.60 Aligned_cols=289 Identities=15% Similarity=0.083 Sum_probs=205.2
Q ss_pred CcHHHHHHHHhhhhCCC--eE-EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc-hhcccCCccc
Q 012138 117 DKFPVFAERLTSMFGYD--MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNEA 192 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~--~v-~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~-~~~~~~~~~~ 192 (470)
+...+++++++++++.+ .+ ++++||++|++.+++.+.. +|+ .|++..++||+.... .....+..
T Consensus 44 ~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~---------~gd-~Vl~~~~~~~~~~~~~~~~~~g~~-- 111 (416)
T 3isl_A 44 GIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIE---------PED-DVLIPIYGRFGYLLTEIAERYGAN-- 111 (416)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCC---------TTC-EEEEEESSHHHHHHHHHHHHTTCE--
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcC---------CCC-EEEEecCCcccHHHHHHHHhcCCe--
Confidence 44678899999998753 34 4889999999999987743 455 788888998873322 22222211
Q ss_pred ccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccc
Q 012138 193 IRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~ 267 (470)
+..++.+ |+++|++++++. ++++|++++++||+|.+.| +++|.++|++||+++|+||+|
T Consensus 112 ----------~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~ 175 (416)
T 3isl_A 112 ----------VHMLECEWGTVFDPEDIIREIKKV--KPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAVA 175 (416)
T ss_dssp ----------EEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECTT
T ss_pred ----------eEEEecCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECCc
Confidence 1222222 899999999843 6788888888999999997 999999999999999999999
Q ss_pred cCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCC--------------------------
Q 012138 268 SGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE-------------------------- 319 (470)
Q Consensus 268 ~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~-------------------------- 319 (470)
+ ++.. .+..+.++ +|++ +++|++.|+. ++|++++++++++.+.+..
T Consensus 176 ~-~~~~--~~~~~~~~--~d~~~~s~~K~l~g~~-g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~ 249 (416)
T 3isl_A 176 T-IGGC--EVKVDEWK--IDAAIGGTQKCLSVPS-GMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYF 249 (416)
T ss_dssp T-TTTS--CCCTTTTT--CSEEECCSSSTTCCCS-SEEEEEECHHHHHHHHTC------------------CCCCSCSTT
T ss_pred c-ccCC--CcchhhcC--CCEEEecCccccCCCC-CeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCcccc
Confidence 7 2111 11223333 4555 5669888887 8999999999887765311
Q ss_pred -----------cc-CCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEE
Q 012138 320 -----------HG-STFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNA 383 (470)
Q Consensus 320 -----------~~-~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~ 383 (470)
.. ...+.+..+++++.++++.+.+ +++.++.+++++++.+.|++++.. ..... ...+.++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~~~~~~ 326 (416)
T 3isl_A 250 DLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLR---LFGDDSCKMPVVTC 326 (416)
T ss_dssp CHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC---BCSCGGGBCTTEEE
T ss_pred chHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCE---eccCccccCCcEEE
Confidence 11 1234678888888888887665 467888888899999988875221 11100 11256666
Q ss_pred EEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEecCCCCCHHH-HHHHHHHHHHHHhcccC
Q 012138 384 VEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTPPLSISSNE-LQEGSKALHDVLELDLP 446 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~~~~~t~e~-i~~~~~~l~~~l~~~~~ 446 (470)
+.+.... +..++.+.|.++ ||.+.++ .++++|++++...++++ +++++++|+++++ ++.
T Consensus 327 ~~~~~~~---~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~-~~~ 391 (416)
T 3isl_A 327 VEIPGGI---DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLL-RHN 391 (416)
T ss_dssp EECCTTC---CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HTT
T ss_pred EeCCCCC---CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHH-HcC
Confidence 6664332 678899999888 9999864 36899999866566666 9999999999999 764
No 144
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.95 E-value=2.2e-26 Score=230.39 Aligned_cols=328 Identities=12% Similarity=0.120 Sum_probs=220.8
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHH-ccc-cC-CCCC--CCcHHHHH----HHHhhhhCCCeE-EecCChhHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK-LTL-SS-RAFY--NDKFPVFA----ERLTSMFGYDMV-LPMNTGAEG 144 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~-~~-~~~~--~~~~~~l~----~~l~~~~~~~~v-~~~~sGteA 144 (470)
++++|+.++.... +|++.+++.++++. ... ++ ..+. .+....++ +++++++|.+.. +++++|++|
T Consensus 23 ~~~i~~~~~~~~~-----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASENFV-----SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTCCCC-----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCCCCC-----CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 3578888876442 79999999998864 221 11 1111 11112333 488888887765 667788999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccc--cchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT--LAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
++.+++++.. +|+ .|++..++|++.. ...+...+.......+ +..++... .|+++|++++++.
T Consensus 98 ~~~~~~~~~~---------~gd-~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~---~d~~~l~~~l~~~- 162 (407)
T 2dkj_A 98 NMAVYMALME---------PGD-TLMGMDLAAGGHLTHGSRVNFSGKLYKVVSY-GVRPDTEL---IDLEEVRRLALEH- 162 (407)
T ss_dssp HHHHHHHHCC---------TTC-EEEEECGGGTCCGGGTCTTSHHHHHSEEEEE-CCCTTTSS---CCHHHHHHHHHHH-
T ss_pred HHHHHHHhcC---------CCC-EEEEecccccCccchHHHHHhcCceEEEEec-CCCcccCc---cCHHHHHHHHhhc-
Confidence 9999998743 354 7888899987653 2222221110000000 00001111 2899999999753
Q ss_pred CCeEEEEE-ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC-CcccCCccccccCCCCccee--eccccccCC
Q 012138 223 DQIAGFLF-EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-LARSGRMLASDWEEVRPDMV--ILGKALGGG 298 (470)
Q Consensus 223 ~~~~~vi~-epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g-~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG 298 (470)
++++|++ +| +|| .+.+ +++|.++|++||++||+||+|++ +...|.... ... .+|++ +++|+++|+
T Consensus 163 -~~~~v~~~~p-~~~--~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~g~ 231 (407)
T 2dkj_A 163 -RPKVIVAGAS-AYP--RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLRGP 231 (407)
T ss_dssp -CCSEEEECCS-SCC--SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGCCC
T ss_pred -CCeEEEEecc-ccC--CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCCCC
Confidence 5777887 66 554 5665 99999999999999999999994 544443321 111 25766 889988854
Q ss_pred CcceeEEEec-HHHHhhcCcCC-ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 299 VIPVSAVLAD-KEVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 299 ~~~ig~v~~~-~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
++|+++++ +++++.+.... .+.+.+.++..++++.++++.+.+ +++.++++++++++.+.|++++ +.
T Consensus 232 --~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~ 303 (407)
T 2dkj_A 232 --RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRG------YR 303 (407)
T ss_dssp --SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT------CE
T ss_pred --CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC------ce
Confidence 78999999 89888775432 333445677777777888887643 5677888888888988888752 22
Q ss_pred EE--eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC----------CCEEEEecCC----CCCHHHHHHHHHHH
Q 012138 374 EV--RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----------DTIVRLTPPL----SISSNELQEGSKAL 437 (470)
Q Consensus 374 ~~--~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~iR~~~~~----~~t~e~i~~~~~~l 437 (470)
.. ++.|.++++.+.... .+..++.+.|.++||.+.++. ++++|++++. .+|++++++++++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l 381 (407)
T 2dkj_A 304 IVTGGTDNHLFLVDLRPKG--LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELI 381 (407)
T ss_dssp EGGGSCSSSEEEEECGGGT--CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHH
T ss_pred eecCCCCceEEEEECcccC--CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHH
Confidence 22 346778888775321 257789999999999987642 5689999765 38999999999999
Q ss_pred HHHHhcc
Q 012138 438 HDVLELD 444 (470)
Q Consensus 438 ~~~l~~~ 444 (470)
+++++ +
T Consensus 382 ~~~~~-~ 387 (407)
T 2dkj_A 382 DRALL-E 387 (407)
T ss_dssp HHHHH-H
T ss_pred HHHHh-c
Confidence 99999 6
No 145
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.94 E-value=1.2e-26 Score=226.34 Aligned_cols=307 Identities=13% Similarity=0.095 Sum_probs=209.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETAL 149 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~~al 149 (470)
.+++||.++... ++ .+|++.+++.++++.... ..+......++++.++++++ .+++++++|+++|++.++
T Consensus 19 ~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 19 RDKTYLALNENP--FP-FPEDLVDEVFRRLNSDAL--RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CCSEEESSCCCS--SC-CCHHHHHHHHHTCCGGGG--GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CcceECCCCCCC--CC-CCHHHHHHHHHHhhhhhh--hcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 457899888543 33 689999999988732211 11222235778888888876 368999999999999998
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL 229 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi 229 (470)
+.+ |+ .|++. ++||+........+. .... .+...+ ..+ |+++| + ++++|+
T Consensus 94 ~~~------------gd-~Vl~~-p~y~~~~~~~~~~g~-~~~~---v~~~~~-~~~---d~~~l-----~---~~~~v~ 143 (335)
T 1uu1_A 94 LMF------------DR-SVFFP-PTYSCYRIFAKAVGA-KFLE---VPLTKD-LRI---PEVNV-----G---EGDVVF 143 (335)
T ss_dssp HHS------------SE-EEECS-SSCHHHHHHHHHHTC-EEEE---CCCCTT-SCC---CCCCC-----C---TTEEEE
T ss_pred HHh------------CC-cEEEC-CCcHHHHHHHHHcCC-eEEE---eccCCC-CCC---CHHHc-----C---CCCEEE
Confidence 865 23 67778 999886654332222 1111 111111 111 44444 2 577777
Q ss_pred -EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCCCcceeecccccc-CCCcceeEEE
Q 012138 230 -FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEVRPDMVILGKALG-GGVIPVSAVL 306 (470)
Q Consensus 230 -~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~~pdi~s~sK~l~-gG~~~ig~v~ 306 (470)
++| +||+|.++ +.+++++|.++| | ++|+||+|++|+.. .... .+..+....+.|+||.++ +|+ |+|+++
T Consensus 144 l~~p-~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~ 215 (335)
T 1uu1_A 144 IPNP-NNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFSLAAQ-RVGYVV 215 (335)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTTCGGG-CCEEEE
T ss_pred EeCC-CCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcCCccc-CeEEEE
Confidence 666 99999999 555555555544 8 89999999976432 2221 222333345669999998 898 999999
Q ss_pred ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEE
Q 012138 307 ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~ 385 (470)
+++++++.+.... .+|+.++++++++.++|+..+ .+++.++++++++++.+.|++++ + ...++.|.++++.
T Consensus 216 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~----~~~~~~~~~~~~~ 287 (335)
T 1uu1_A 216 ASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG--Y----RITDSRGNFVFVF 287 (335)
T ss_dssp ECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT--C----CBCCCCSSEEEEE
T ss_pred eCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC--c----EEcCCCCeEEEEE
Confidence 9999988876432 357889999999988887532 24567777888888888887762 1 1224556676665
Q ss_pred eccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 386 FDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+.. .+..++.+.|.++||.+.+ ..+++|+++ .+++++++++++|+++
T Consensus 288 ~~~----~~~~~~~~~l~~~gi~v~~-~~~~iRis~---~~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 288 MEK----EEKERLLEHLRTKNVAVRS-FREGVRITI---GKREENDMILRELEVF 334 (335)
T ss_dssp CCT----HHHHHHHHHHHHHTEEEEE-ETTEEEEEC---CCHHHHHHHHHHHHCC
T ss_pred CCC----CCHHHHHHHHHHCCEEEEE-CCCeEEEEe---CCHHHHHHHHHHHHhh
Confidence 532 2567899999999999988 467999995 3578899999998764
No 146
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.94 E-value=9.3e-27 Score=228.65 Aligned_cols=322 Identities=14% Similarity=0.086 Sum_probs=205.4
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCe-EEecCChhHHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM-VLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-v~~~~sGteA~~~al~~~~ 153 (470)
..+|||.++. .++.+|++++++.+++.. +.......+...++++++++++|.+. +++++||++|++.++++++
T Consensus 7 ~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~ 80 (356)
T 1v72_A 7 PPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT 80 (356)
T ss_dssp CCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC
T ss_pred CceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc
Confidence 4578998762 356899999999888632 11111234567899999999988554 8999999999999998764
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccch--hccc--CCcccccCCCCCCCCeeeecCCCHHHHHH-HHHhc----CCC
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAA--ISMS--CDNEAIRGFGPLLPGHLKVDFGDITALEK-IFKES----GDQ 224 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~Le~-~l~~~----~~~ 224 (470)
. +|+ .|++..++ |+..... +... +.... +.+. +...+ |+++|++ ++++. +.+
T Consensus 81 ~---------~gd-~vi~~~~~-~~~~~~~~~~~~~~~g~~~~---~v~~--~~~~~---d~~~l~~~~i~~~~~~~~~~ 141 (356)
T 1v72_A 81 P---------PWG-NIYCHPAS-HINNDECGAPEFFSNGAKLM---TVDG--PAAKL---DIVRLRERTREKVGDVHTTQ 141 (356)
T ss_dssp C---------TTE-EEEECTTS-HHHHSSTTHHHHHTTSCEEE---ECCC--GGGCC---CHHHHHHHTTSSTTCTTSCE
T ss_pred C---------CCC-EEEEcCcc-chhhhhchHHHHHhCCcEEE---EecC--CCCeE---cHHHHHHHhhhcchhhccCC
Confidence 3 454 66666665 4443322 2222 22111 0111 01112 8999999 88641 136
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc--ccCCccccccCC--CCccee--eccccccCC
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA--RSGRMLASDWEE--VRPDMV--ILGKALGGG 298 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g--~~G~~~~~~~~~--~~pdi~--s~sK~l~gG 298 (470)
+++|++++++| +|.++ +.+++++|.++|++||++||+||+|..+. ..|.. ....+ ...|++ +++|+ |
T Consensus 142 ~~~v~~~~~~~-tG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g 214 (356)
T 1v72_A 142 PACVSITQATE-VGSIY-TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G 214 (356)
T ss_dssp EEEEEEESSCT-TSCCC-CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T
T ss_pred ceEEEEEcCCC-CCccC-CHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C
Confidence 89999888665 99988 89999999999999999999999997431 12211 11111 123554 56787 3
Q ss_pred Cccee--EEEecHHHHhhcCcCC-ccCCCCCCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 012138 299 VIPVS--AVLADKEVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYV 372 (470)
Q Consensus 299 ~~~ig--~v~~~~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~p~~~ 372 (470)
. |+| ++++++++++.+.... ..++.... ...++.++++.++++ ++.++.+++++++.+.|+++ | .+
T Consensus 215 ~-~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~ 286 (356)
T 1v72_A 215 V-LAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL----G-GV 286 (356)
T ss_dssp C-SSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC----T-TE
T ss_pred C-cCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC----C-Cc
Confidence 3 666 7778888877664321 11222221 122233344555442 34556666677777766542 2 23
Q ss_pred EEEe-ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 373 KEVR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 373 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.... ..+.++++.+. .++++.|.++||.+.++. .+++|+++++.+|++++++++++|+++++ +.
T Consensus 287 ~~~~~~~~~~~~~~~~--------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~-~~ 353 (356)
T 1v72_A 287 EVLGGTEANILFCRLD--------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAAD-RT 353 (356)
T ss_dssp EEESCCCSSEEEEEEC--------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred EEccCCCccEEEEEcC--------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHH-hh
Confidence 3333 33444444432 268899999999998653 68999999999999999999999999887 54
No 147
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.94 E-value=4.5e-26 Score=223.25 Aligned_cols=303 Identities=16% Similarity=0.107 Sum_probs=214.4
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
.+|++.+++.+++.. +.+ ....+...+++++++++++. +.+++|+||++|+..+++.+. + +
T Consensus 11 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-----------~-d 75 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HLD-PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-----------R-G 75 (353)
T ss_dssp CCHHHHGGGGSCCCC--TTC-HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS-----------C-C
T ss_pred CCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc-----------C-C
Confidence 678999988776643 110 00123467899999999876 469999999999999988652 2 3
Q ss_pred EEEEEccCcccccc-chhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEccccCCCcccc
Q 012138 168 IIVSCCGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVII 241 (470)
Q Consensus 168 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~ 241 (470)
.|++..++||+... ......+.. +..++. .|+++|+++++++ ++++|++++++||+|.+.
T Consensus 76 ~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~ 141 (353)
T 2yrr_A 76 PVLVLVNGAFSQRVAEMAALHGLD------------PEVLDFPPGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLN 141 (353)
T ss_dssp CEEEEECSHHHHHHHHHHHHTTCC------------EEEEECCTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEEC
T ss_pred cEEEEcCCCchHHHHHHHHHcCCc------------eEEEeCCCCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceec
Confidence 67778888876411 111111111 122221 2899999999863 567888878899999999
Q ss_pred CChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCc--
Q 012138 242 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP-- 317 (470)
Q Consensus 242 ~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~-- 317 (470)
| +++|.++|++||+++|+||+|+ ++... +....++ +|++ +++|.++++. ++|++++++++++.++.
T Consensus 142 ~----~~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~d~~~~s~~K~~~~~~-g~G~~~~~~~~~~~l~~~~ 211 (353)
T 2yrr_A 142 P----AEAIGALAKEAGALFFLDAVTT-LGMLP--FSMRAMG--VDYAFTGSQKCLSAPP-GLAPIAASLEARKAFTGKR 211 (353)
T ss_dssp C----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHHT--CSEEECCTTSTTCCCS-SCEEEEECHHHHHHCCCCS
T ss_pred C----HHHHHHHHHHcCCeEEEEcCcc-ccccc--ccccccC--ceEEEecCcccccCCC-ceEEEEECHHHHHHhccCC
Confidence 7 9999999999999999999995 54332 2222233 4655 5579888766 78999999999887751
Q ss_pred C-------------CccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec---c
Q 012138 318 G-------------EHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG---R 378 (470)
Q Consensus 318 ~-------------~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~---~ 378 (470)
. .....++.++.+++++.++++.+.+ +++.++.+++++++.+.|++++ +....+ .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~ 285 (353)
T 2yrr_A 212 GWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARG------FRPYPKASPL 285 (353)
T ss_dssp CSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT------CEESCSSSBC
T ss_pred CccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC------CccccCccCC
Confidence 0 1122345678888888888887654 3567788888888888887752 111112 3
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHH-HHHHHHHHHHh
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQ-EGSKALHDVLE 442 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~-~~~~~l~~~l~ 442 (470)
+.++++.++.. .+..++.+.|.++||.+.++. .+++|++++...++++++ +++++|+++++
T Consensus 286 ~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 286 PTVLVVRPPEG---VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp TTEEEEECCTT---CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCC---CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 45555655422 257889999999999998753 678999987778999999 99999999987
No 148
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.94 E-value=2.3e-26 Score=225.44 Aligned_cols=308 Identities=17% Similarity=0.068 Sum_probs=214.5
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 169 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~i 169 (470)
.+|++.+++.+++.. + ......+...+++++++++++.+ .+++++||++|++.+++.+.. +|+ .|
T Consensus 12 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~---------~gd-~v 78 (352)
T 1iug_A 12 LHPKALEALARPQLH--H-RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA---------PGE-RV 78 (352)
T ss_dssp CCHHHHHHHHSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC---------TTC-EE
T ss_pred CCHHHHHHhccCCCC--c-cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccC---------CCC-eE
Confidence 679999998877642 1 00011234578999999998865 799999999999999998743 454 78
Q ss_pred EEEccCccccccchh-cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHH
Q 012138 170 VSCCGCFHGRTLAAI-SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 170 i~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
++..++|++...... ...+..... .+...+ ..+ |+++|++ . ++++|++++++||+|.+.| ++
T Consensus 79 l~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~-~~~---d~~~l~~---~---~~~~v~~~~~~nptG~~~~----l~ 141 (352)
T 1iug_A 79 LVPVYGKFSERFYEIALEAGLVVER---LDYPYG-DTP---RPEDVAK---E---GYAGLLLVHSETSTGALAD----LP 141 (352)
T ss_dssp EEEECSHHHHHHHHHHHHTTCEEEE---EECCTT-CCC---CTTTSCC---S---SCSEEEEESEETTTTEECC----HH
T ss_pred EEEeCCchhHHHHHHHHHcCCceEE---EeCCCC-CCC---CHHHHhc---c---CCcEEEEEEecCCcceecC----HH
Confidence 888888877541111 111111110 011000 011 5666655 2 6778888788999999997 99
Q ss_pred HHHHHHHhc--CcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCc-------
Q 012138 249 AVRDLCSKY--NILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP------- 317 (470)
Q Consensus 249 ~l~~l~~~~--gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~------- 317 (470)
+|.++|++| |+++|+||+|+ ++.. .+....++ +|++ +++|++.++. ++|++++++++++.+..
T Consensus 142 ~i~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~ 215 (352)
T 1iug_A 142 ALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAMG--VDAAASGSQKGLMCPP-GLGFVALSPRALERLKPRGYYLDL 215 (352)
T ss_dssp HHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGGT--CSEEEEESSSTTCCCS-CEEEEEECHHHHHTCCCCSSTTCH
T ss_pred HHHHHHHhhCCCCEEEEECCcc-ccCc--ceeccccC--eeEEEecCcccccCCC-ceeEEEECHHHHHHhhCCCceeeH
Confidence 999999999 99999999997 3322 11222223 4655 6679888766 78999999987765321
Q ss_pred ------C-CccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec--cceeEEEEe
Q 012138 318 ------G-EHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEF 386 (470)
Q Consensus 318 ------~-~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~--~g~~~~~~~ 386 (470)
. .....++.++.+++++.++++.+++ +++.++++++++++.+.|++++ +....+ .+.++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~~ 289 (352)
T 1iug_A 216 ARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGG------LRPVPKRFSPAVAAFYL 289 (352)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTT------CEESCSSBCTTCEEEEC
T ss_pred HHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CcccccccCCeEEEEEc
Confidence 0 1222345788888888888887765 3677788888888888887752 222222 566777766
Q ss_pred ccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 387 DKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
... .+..++++.|.++||.+.++. .+++||+++..++++++++++++|+++++ ++
T Consensus 290 ~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~ 348 (352)
T 1iug_A 290 PEG---VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLE-EI 348 (352)
T ss_dssp CTT---CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred CCC---CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHH-Hh
Confidence 532 257889999999999998763 68999999888899999999999999998 65
No 149
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.94 E-value=6.1e-26 Score=222.28 Aligned_cols=331 Identities=16% Similarity=0.153 Sum_probs=215.4
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARK 154 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~ 154 (470)
.++|||.++... . .+|++.+++.+..... ...+..+...+++++++++++.+.+++++||++|+..+++.+..
T Consensus 3 ~~~i~~~~~~~~---~-p~~~~~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~ 75 (347)
T 1jg8_A 3 HMMIDLRSDTVT---K-PTEEMRKAMAQAEVGD---DVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQ 75 (347)
T ss_dssp --CEECSCGGGC---C-CCHHHHHHHHTCCCCC---GGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC
T ss_pred ceEEEeccccCC---C-CCHHHHHHHhcCCCCC---cccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcC
Confidence 356888887543 2 5688888876542111 11123445678999999999999999999999999998876643
Q ss_pred hchhcccCCCCCcEEEEEccCcccccc-c-hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc---CCCeEEEE
Q 012138 155 WGYVKKKFSIDEAIIVSCCGCFHGRTL-A-AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFL 229 (470)
Q Consensus 155 ~~~~~~~~~~g~~~ii~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~---~~~~~~vi 229 (470)
+|+ .|++..++|..... . .....+..... + . .....+ |+++|++++++. ..++++|+
T Consensus 76 ---------~gd-~Vl~~~~~~~~~~~~~~~~~~~g~~~~~--v-~--~~~~~~---d~~~l~~~i~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 76 ---------RGD-EVILEADSHIFWYEVGAMAVLSGVMPHP--V-P--GKNGAM---DPDDVRKAIRPRNIHFPRTSLIA 137 (347)
T ss_dssp ---------TTC-EEEEETTCHHHHSSTTHHHHHTCCEEEE--E-C--EETTEE---CHHHHHHHSCCSCTTSCCEEEEE
T ss_pred ---------CCC-EEEEcCcchhhhccccchhhccCeEEEE--e-c--CCCCcc---CHHHHHHHhccccccccCceEEE
Confidence 455 77778887532111 1 11212211110 0 0 000112 899999998642 12689999
Q ss_pred EccccCCC-ccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCCCcc--eeeccccccCCCccee-
Q 012138 230 FEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPD--MVILGKALGGGVIPVS- 303 (470)
Q Consensus 230 ~epi~n~~-G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~~pd--i~s~sK~l~gG~~~ig- 303 (470)
+++++||+ |.++ +.+++++|.++|++||+++|+||+|.- +...+.. ........| ++++||++++ ++|
T Consensus 138 ~~~~~npt~G~~~-~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~---~~G~ 211 (347)
T 1jg8_A 138 IENTHNRSGGRVV-PLENIKEICTIAKEHGINVHIDGARIFNASIASGVP--VKEYAGYADSVMFCLSKGLCA---PVGS 211 (347)
T ss_dssp EESSBTTTTSBCC-CHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCC--HHHHHHTCSEEEEESSSTTCC---SSCE
T ss_pred EeccccccCCccC-cHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCC--hHHhcccccEEEEecccccCC---CceE
Confidence 88889999 9988 888999999999999999999998751 1112211 110100123 3479999875 456
Q ss_pred EEEecHHHHhhcCcC--CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 304 AVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
++++++++++.+... ..++++..+.+.++++..+++... +.+ ++..++++++.+.|++++.. +...++.+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~~~~~~~l~~~L~~~~~~----~~~~~~~~~~ 285 (347)
T 1jg8_A 212 VVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DRL-KEDHENARFLALKLKEIGYS----VNPEDVKTNM 285 (347)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TTH-HHHHHHHHHHHHHHHHHTCB----CCGGGCCSSE
T ss_pred EEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhcCce----eccCCCcceE
Confidence 466788887665321 223344456677777777776532 223 33445667888888776211 1111345667
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+++.+.... .+..++++.|.++||.+.+.+.+++|++++..++++++++++++|+++++ ++
T Consensus 286 ~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~-~~ 346 (347)
T 1jg8_A 286 VILRTDNLK--VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFR-KF 346 (347)
T ss_dssp EEEECTTSS--SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHH-HH
T ss_pred EEEEccccc--CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH-hc
Confidence 777664211 25788999999999999887778999999888999999999999999887 53
No 150
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.94 E-value=3.7e-26 Score=228.47 Aligned_cols=319 Identities=15% Similarity=0.144 Sum_probs=219.3
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-H
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-R 153 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~ 153 (470)
+.||||..+.... +|++.+++.++++...+. ..+...++++.++++++.+.+++++||++|++.+++.+ .
T Consensus 30 ~~~id~~~~~~~~-----~~~v~~a~~~~~~~~~y~----~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~ 100 (399)
T 2oga_A 30 VPFLDLKAAYEEL-----RAETDAAIARVLDSGRYL----LGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGI 100 (399)
T ss_dssp BCSCCHHHHHHHT-----HHHHHHHHHHHHHHTCCS----SSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTC
T ss_pred CcccccCcCCCCC-----CHHHHHHHHHHHhcCCCC----CchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCC
Confidence 5789998875442 289999999988763221 23456889999999999889999999999999999876 3
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccc
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI 233 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi 233 (470)
. +|+ .|++..++|++.... +...+..... .+..++...+ |+++|++++++ ++++|++
T Consensus 101 ~---------~gd-~vl~~~~~~~~~~~~-~~~~g~~~~~---~~~~~~~~~~---d~~~l~~~i~~---~~~~v~~--- 157 (399)
T 2oga_A 101 G---------PGD-EVIVPSHTYIASWLA-VSATGATPVP---VEPHEDHPTL---DPLLVEKAITP---RTRALLP--- 157 (399)
T ss_dssp C---------TTC-EEEEESSSCTHHHHH-HHHTTCEEEE---ECBCSSSSSB---CHHHHHHHCCT---TEEEECC---
T ss_pred C---------CcC-EEEECCCccHHHHHH-HHHCCCEEEE---EecCCCCCCc---CHHHHHHhcCC---CCeEEEE---
Confidence 2 454 788899998774433 2222221111 1111111122 89999999875 7888873
Q ss_pred cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC-cccCCccccccCCCCcceeec----cccccC-CCcceeEEEe
Q 012138 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL-ARSGRMLASDWEEVRPDMVIL----GKALGG-GVIPVSAVLA 307 (470)
Q Consensus 234 ~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~-g~~G~~~~~~~~~~~pdi~s~----sK~l~g-G~~~ig~v~~ 307 (470)
+||+|.+.+ +++|.++|++||++||+||+|+.+ ...+.. ++..+|++++ +|.+++ | ++|+++.
T Consensus 158 ~n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~~~sK~~~~~G--~~g~~~~ 226 (399)
T 2oga_A 158 VHLYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGRR-----IGAGSSVAAFSFYPGKNLGCFG--DGGAVVT 226 (399)
T ss_dssp BCGGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTEE-----TTCTTCEEEEECCTTSSSCCSS--CCEEEEE
T ss_pred eCCcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCee-----cccccCEEEEeCCCCccCCcCC--ceEEEEe
Confidence 678999987 999999999999999999999832 223321 2223577765 599986 6 7888887
Q ss_pred c-HHHHhhcCcCCc------------cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 308 D-KEVMLCIQPGEH------------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 308 ~-~~~~~~~~~~~~------------~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+ +++++.+..... +.++..++++++++.++++.++ .+.++.+++.+++.+.|.++.. + .+..
T Consensus 227 ~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~g-~--~~~~ 301 (399)
T 2oga_A 227 GDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLPG-I--GLPV 301 (399)
T ss_dssp SCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCTT-C--BCCC
T ss_pred CCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCC-c--cccC
Confidence 5 788766543211 2334678999998888887654 3556667777777777665311 0 0111
Q ss_pred EeccceeE--EEEeccCCCchhHHHHHHHHHHcCceeccCCC---------------------------CEEEEecCCCC
Q 012138 375 VRGRGLFN--AVEFDKTALPVSAYDICLKMKERGILAKPTHD---------------------------TIVRLTPPLSI 425 (470)
Q Consensus 375 ~~~~g~~~--~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------------~~iR~~~~~~~ 425 (470)
....+.+. .+.+... +..++.+.|.++||.+.+... +.+||+++..+
T Consensus 302 ~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~ 377 (399)
T 2oga_A 302 TAPDTDPVWHLFTVRTE----RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHL 377 (399)
T ss_dssp CCTTEECCCSSEEEECS----SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTC
T ss_pred CCCCCcceeEEEEEECC----CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCC
Confidence 11122222 2333221 577899999999999876431 57999999999
Q ss_pred CHHHHHHHHHHHHHHHhcccC
Q 012138 426 SSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|++|+++++++|+++++ +++
T Consensus 378 t~edi~~~~~~l~~~~~-~l~ 397 (399)
T 2oga_A 378 ERPQALRVIDAVREWAE-RVD 397 (399)
T ss_dssp CHHHHHHHHHHHHHHHH-SCC
T ss_pred CHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999999999998 764
No 151
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.94 E-value=3.8e-26 Score=228.14 Aligned_cols=328 Identities=12% Similarity=0.052 Sum_probs=198.1
Q ss_pred EEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC------CCCCcHHHHHHHHhhhhCCC--eEEecC
Q 012138 68 SIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA------FYNDKFPVFAERLTSMFGYD--MVLPMN 139 (470)
Q Consensus 68 ~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~--~v~~~~ 139 (470)
+.++.++..|+|+.++. ..+|++.+++.++++.....+.. ...+...+++++++++++.+ ++++++
T Consensus 14 ~~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 87 (400)
T 3vax_A 14 LVPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTS 87 (400)
T ss_dssp --------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEES
T ss_pred CCcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 34556777888887652 36899999999998754211110 12344678999999998764 799999
Q ss_pred ChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHH
Q 012138 140 TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITAL 214 (470)
Q Consensus 140 sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~L 214 (470)
||++|++.+++.+..+.. + +|+..|++..+.|++.......+.. .+.+ +..++.+ |+++|
T Consensus 88 g~t~al~~~~~~l~~~~~-~----~gd~~Vl~~~~~~~~~~~~~~~~~~-~g~~---------~~~v~~~~~~~~d~~~l 152 (400)
T 3vax_A 88 GATESNNIALLGLAPYGE-R----TGRRHIITSAIEHKAVLEPLEHLAG-RGFE---------VDFLTPGPSGRISVEGV 152 (400)
T ss_dssp CHHHHHHHHHHTTHHHHH-H----HTCCEEEEETTSCHHHHHHHHHHHT-TTCE---------EEEECCCTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhhc-c----CCCCEEEECccccHhHHHHHHHHHh-cCCe---------EEEEccCCCCCcCHHHH
Confidence 999999999997762110 0 3442677777776543322222110 0111 1222222 89999
Q ss_pred HHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--ecc
Q 012138 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILG 292 (470)
Q Consensus 215 e~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~s 292 (470)
++++++ ++++|++++++||+|.+.| +++|.++|++||++||+||+|+ ++... .+.... +|++ +++
T Consensus 153 ~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~ 219 (400)
T 3vax_A 153 MERLRP---DTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGH 219 (400)
T ss_dssp HTTCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETG
T ss_pred HHhcCC---CceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHH
Confidence 998875 7899998888999999997 9999999999999999999997 22111 121223 6776 556
Q ss_pred ccccCCCcceeEEE-ecHH-HH---hhcCcCCc-------cCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q 012138 293 KALGGGVIPVSAVL-ADKE-VM---LCIQPGEH-------GSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELR 358 (470)
Q Consensus 293 K~l~gG~~~ig~v~-~~~~-~~---~~~~~~~~-------~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~ 358 (470)
|. .|+. ++|+++ ++++ +. ..+.+... ....+.++.+++++.++++.+.+ +++.++.+++++++.
T Consensus 220 K~-~g~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~ 297 (400)
T 3vax_A 220 KI-GAPK-GVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLL 297 (400)
T ss_dssp GG-TSCS-SCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred Hh-CCCC-ceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 94 4443 678888 7662 11 12222211 12344678888888888887655 567777888888888
Q ss_pred HHHHHHHhhCCCceEEEecc----ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC---------------------
Q 012138 359 QHLFKIQQQFPNYVKEVRGR----GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--------------------- 413 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------------------- 413 (470)
+.|+ . | .+....+. +.++.+.+.. .+..++.+.|. +||.+.++.
T Consensus 298 ~~L~-~----~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~ 366 (400)
T 3vax_A 298 AGLA-S----T-SFQVNGDQDHVVPHILNLSFED----VDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEE 366 (400)
T ss_dssp HHHT-T----T-TCEECSCTTSBCTTEEEEECTT----CCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHH
T ss_pred HhhC-C----C-CEEEeCCcccCCCCEEEEEeCC----CCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCcc
Confidence 8776 2 1 23332222 3466665542 26788999999 999987752
Q ss_pred --CCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 012138 414 --DTIVRLTP-PLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 414 --~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+++||++ +..+|++++++++++|+++++
T Consensus 367 ~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 367 AASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp HHTSEEEEEEEEC-------------------
T ss_pred ccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 48999999 888999999999999998876
No 152
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.94 E-value=2.5e-25 Score=221.41 Aligned_cols=286 Identities=16% Similarity=0.126 Sum_probs=198.5
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+.++...++++.++++++.+..+++++|++|++.+++.+.. +|+ .|++..++||+............
T Consensus 49 ~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~~---------~g~-~vl~~~~~~~~~~~~~~~~~~~~--- 115 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK---------PGD-LLVAPHDCYGGSYRLFDSLAKRG--- 115 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEETTCCHHHHHHHHHHHTTT---
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEecCCcHhHHHHHHHHHHhc---
Confidence 44556788999999998877766778889999999997743 344 78889999876332110100000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
...+..++.+|+++|++++++ ++++|++++++||+|.+.+ +++|.++|++||+++|+||+|+++...
T Consensus 116 ------g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~ 182 (386)
T 1cs1_A 116 ------CYRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ 182 (386)
T ss_dssp ------SCEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred ------CCEEEEeCCCCHHHHHHhhcc---CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 012356677799999999986 7889999999999999997 999999999999999999999966433
Q ss_pred CCccccccCCCCcceeeccccccCCCcce-eEEEecH-HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHH
Q 012138 274 GRMLASDWEEVRPDMVILGKALGGGVIPV-SAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA 351 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~s~sK~l~gG~~~i-g~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~ 351 (470)
. . . .++.+..+.+++|.++++..++ |++++++ ++++.+.....+.+.+.++++++++.++++.+. ...++..
T Consensus 183 ~-~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 256 (386)
T 1cs1_A 183 N-P--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV--PRMELAQ 256 (386)
T ss_dssp C-G--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHH--HHHHHHH
T ss_pred C-c--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHHH--HHHHHHH
Confidence 1 1 1 2333333448999998533266 9999875 788877655444456678888888777766442 2334455
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccCCCchhHHHHHHHHHHcCceecc--
Q 012138 352 HLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-- 411 (470)
Q Consensus 352 ~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-- 411 (470)
++.+.+.+.|+++. .+..+ ++.|.++.+.+.. ....+.+.|.++||.+.+
T Consensus 257 ~~~~~l~~~l~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~~~ 326 (386)
T 1cs1_A 257 RNAQAIVKYLQTQP-----LVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-----DEQTLRRFLGGLSLFTLAES 326 (386)
T ss_dssp HHHHHHHHHHTTCT-----TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----CHHHHHHHHHTCSSSEEBSC
T ss_pred HHHHHHHHHHhcCC-----CeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC-----CHHHHHHHHHhCCcceEccc
Confidence 55555555554421 12111 3458888887653 256778888888998863
Q ss_pred -C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 412 -T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 412 -~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+ .++++||+++...++++++.+.+.|+++.
T Consensus 327 ~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 327 LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 1 14799999998777777777777776653
No 153
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.94 E-value=1.1e-25 Score=228.93 Aligned_cols=346 Identities=16% Similarity=0.138 Sum_probs=216.9
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKL 151 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~ 151 (470)
.|..|+||.++.++.+ ..+++.+++. .. ...+ ..+...++++.++++++.+++++++||++|++.+++.
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~---~~~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~ 109 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MG---DEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQL 109 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TC---CCCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHH
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cc---hhhcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHH
Confidence 3567999988765433 3466666654 11 1112 2345678999999999999999999999999999987
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC-CCCe-eeecCC-CHHHHHHHHHhcC-CCeEE
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGH-LKVDFG-DITALEKIFKESG-DQIAG 227 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-d~~~Le~~l~~~~-~~~~~ 227 (470)
+.. +|+ ++..++||+.+...+...+......+..+. .++. ..+.++ |+++|++++++.. ..+++
T Consensus 110 l~~---------~gd---i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~ 177 (456)
T 2ez2_A 110 AIK---------PGQ---YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAY 177 (456)
T ss_dssp HCC---------TTC---EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEE
T ss_pred hCC---------CCC---EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeE
Confidence 743 455 667888877755555544432221111100 0000 001112 8999999998632 23588
Q ss_pred EEEccccC-CCccccCChhhHHHHHHHHHhcCcEEEEeccccC----------CcccCCccc-c-ccCCCCcceeecc-c
Q 012138 228 FLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG----------LARSGRMLA-S-DWEEVRPDMVILG-K 293 (470)
Q Consensus 228 vi~epi~n-~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g----------~g~~G~~~~-~-~~~~~~pdi~s~s-K 293 (470)
|++++++| |+|.++ +.+++++|.++|++||++||+||+|+. +.+.|..+. + +..+..+|++++| |
T Consensus 178 v~l~~p~n~ptG~~~-~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~k 256 (456)
T 2ez2_A 178 ICLAVTVNLAGGQPV-SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGK 256 (456)
T ss_dssp EEEESSBTTTTSBCC-CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETT
T ss_pred EEEeccCCCCCCccC-CHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCc
Confidence 88875566 999888 899999999999999999999999983 445554321 0 0112235877664 4
Q ss_pred cccCCCcceeEEEe-cHHHHhhcCcCC---cc-CCC-CCCHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 012138 294 ALGGGVIPVSAVLA-DKEVMLCIQPGE---HG-STF-GGNPLASAV-AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 294 ~l~gG~~~ig~v~~-~~~~~~~~~~~~---~~-~t~-~~~~~~~aa-a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
.+++.- +.|++++ ++++++.+.... ++ .++ +.+...+++ +.+.++.++ +.+.++.+++.+++.+.|+++
T Consensus 257 k~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~-- 332 (456)
T 2ez2_A 257 KDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA-- 332 (456)
T ss_dssp TTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT--
T ss_pred ccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC--
Confidence 454321 4788888 688877654321 11 122 234334333 444444443 456677777888888888774
Q ss_pred hCCCceEEEeccceeEEEEecc--CCC--ch-hHHHHHHHH-HHcCceecc-C----------------CCCEEEEecCC
Q 012138 367 QFPNYVKEVRGRGLFNAVEFDK--TAL--PV-SAYDICLKM-KERGILAKP-T----------------HDTIVRLTPPL 423 (470)
Q Consensus 367 ~~p~~~~~~~~~g~~~~~~~~~--~~~--~~-~~~~~~~~l-~~~Gv~~~~-~----------------~~~~iR~~~~~ 423 (470)
.++ .+. +..|.++++.+.. +.. .. ....++++| .++||.+.+ + ..+++||+++.
T Consensus 333 g~~-~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~ 409 (456)
T 2ez2_A 333 GVP-IVE--PVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPR 409 (456)
T ss_dssp TCC-BCS--SCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCT
T ss_pred CCc-ccc--CCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCC
Confidence 121 111 2335555555421 110 01 133447777 577997543 1 13789999988
Q ss_pred C-CCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 424 S-ISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 424 ~-~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
. ++++++++++++|+++++ +.....
T Consensus 410 ~~~t~e~i~~~~~~l~~~l~-~~~~~~ 435 (456)
T 2ez2_A 410 RVYTYAHMDVVADGIIKLYQ-HKEDIR 435 (456)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-TGGGCC
T ss_pred CCCCHHHHHHHHHHHHHHHh-hhhhcC
Confidence 7 899999999999999999 766544
No 154
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.94 E-value=8e-26 Score=230.68 Aligned_cols=349 Identities=17% Similarity=0.165 Sum_probs=208.9
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~ 152 (470)
|+.|||+.++.+. |++.+++.+++.... ..| ..+...+++++++++++.+++++|+||++|++.+++++
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~ 109 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVL 109 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHH
Confidence 5679999876543 788888888775322 112 23446789999999999999999999999999999988
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcc-cCCcccccCCCCC-CCCeeeecC---CCHHHHHHHHHhcC-CCeE
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAIRGFGPL-LPGHLKVDF---GDITALEKIFKESG-DQIA 226 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~---~d~~~Le~~l~~~~-~~~~ 226 (470)
+..++..+|.+.++. |++. .||+.+...... .+.... ..+... .+.....++ .|+++|++++++++ ++++
T Consensus 110 ~~~~~~~~G~~~~d~-Ii~~--~~h~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~ 185 (467)
T 2oqx_A 110 IKKREQEKGLDRSKM-VAFS--NYFFDTTQGHSQINGCTVR-NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVP 185 (467)
T ss_dssp HHHHHHHHCCCTTTC-EEEE--SSCCHHHHHHHHHTTCEEE-ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCC
T ss_pred hccccccCCCCccce-EEec--ccccccchhhhhccCccee-eccccccccCCCCCCccCCcCHHHHHHHHHhcCCCcee
Confidence 762111101000054 5554 467553222111 111100 000000 000001111 18999999998532 3689
Q ss_pred EEEEccccCCC-ccccCChhhHHHHHHHHHhcCcEEEEeccccC----------CcccCCcc-ccc--cCCCCcc--eee
Q 012138 227 GFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEIQSG----------LARSGRML-ASD--WEEVRPD--MVI 290 (470)
Q Consensus 227 ~vi~epi~n~~-G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g----------~g~~G~~~-~~~--~~~~~pd--i~s 290 (470)
+|++++++||+ |.++ +.+++++|+++|++||++||+|++|.. .+..|... .+. .+. .+| +.+
T Consensus 186 ~vi~~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~~~~s 263 (467)
T 2oqx_A 186 YIVATITSNSAGGQPV-SLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK-YADMLAMS 263 (467)
T ss_dssp CEEEESSBCGGGCBCC-CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGG-GCSEEEEE
T ss_pred EEEEeccccCCCCccC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhc-cCCeEEEe
Confidence 99999989997 7777 899999999999999999999977642 13333211 110 000 124 357
Q ss_pred ccccccCCCcce-eEEEecHH-H---HhhcCcC----CccCCCCCCH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012138 291 LGKALGGGVIPV-SAVLADKE-V---MLCIQPG----EHGSTFGGNP-LASAVAIASLDVIRDEKLAERSAHLGEELRQH 360 (470)
Q Consensus 291 ~sK~l~gG~~~i-g~v~~~~~-~---~~~~~~~----~~~~t~~~~~-~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~ 360 (470)
++|+++. ++ |+++++++ + +..++.. ....+++... .++++....++...+++..++..++++++.+.
T Consensus 264 ~sK~~g~---~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~ 340 (467)
T 2oqx_A 264 AKKDAMV---PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDG 340 (467)
T ss_dssp SSSTTCC---SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccCC---CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence 7888753 43 45666655 3 3333221 1112233222 22222222223222233556667788888888
Q ss_pred HHHHHhhCCCceEEEeccceeEEEEecc--CCC-c-h-hHHHHHHHH-HHcCceeccCC-----------------CCEE
Q 012138 361 LFKIQQQFPNYVKEVRGRGLFNAVEFDK--TAL-P-V-SAYDICLKM-KERGILAKPTH-----------------DTIV 417 (470)
Q Consensus 361 L~~l~~~~p~~~~~~~~~g~~~~~~~~~--~~~-~-~-~~~~~~~~l-~~~Gv~~~~~~-----------------~~~i 417 (470)
|+++ .++ .+ +..|.++++.+.. ... . . +...+++.| .++||.+.|++ .+++
T Consensus 341 L~~~--~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~i 414 (467)
T 2oqx_A 341 LEEI--GVV-CQ---QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELL 414 (467)
T ss_dssp HHHT--TCC-EE---EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEE
T ss_pred HHHC--CCe-ee---cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeE
Confidence 8876 232 22 3345566666531 110 0 1 156678888 88899987632 2799
Q ss_pred EEecCCC-CCHHHHHHHHHHHHHHHhcccCCC
Q 012138 418 RLTPPLS-ISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 418 R~~~~~~-~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
||+++.. +|+++|++++++|+++++ +.++.
T Consensus 415 Rl~~~~~~~t~e~i~~~~~~l~~~l~-~~~~~ 445 (467)
T 2oqx_A 415 RLTIPRATYTQTHMDFIIEAFKHVKE-NAANI 445 (467)
T ss_dssp EECCCTTTSCHHHHHHHHHHHHHHHH-SGGGC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHh-hhhhC
Confidence 9999988 999999999999999999 76543
No 155
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.94 E-value=3.1e-25 Score=221.18 Aligned_cols=318 Identities=13% Similarity=0.091 Sum_probs=217.2
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.++++.+++.+.+.. .. ..+......++++.++++++.+ ++++++||++|++.+++.+.. +|+ .
T Consensus 29 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~---------~gd-~ 95 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NF-HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE---------EGD-R 95 (396)
T ss_dssp CCHHHHHHTTSCCCC--TT-CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC---------TTC-E
T ss_pred CCHHHHHHhcccccc--CC-ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcC---------CCC-e
Confidence 568888877665421 00 0011234678889999998753 699999999999999998743 454 7
Q ss_pred EEEEccCcccccc-chhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 169 IVSCCGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 169 ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
|++..++|++... ......+..... .+...+ . ..|+++|++++++. ++++|++++++||+|.++| +
T Consensus 96 vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~-~---~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~ 162 (396)
T 2ch1_A 96 VLIAVNGIWAERAVEMSERYGADVRT---IEGPPD-R---PFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----L 162 (396)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEE---EECCTT-S---CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----C
T ss_pred EEEEcCCcccHHHHHHHHHcCCceEE---ecCCCC-C---CCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----H
Confidence 8889999887531 122222211110 011000 0 13899999999863 5678887777999999997 8
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceee--ccccccCCCcceeEEEecHHHHhhcCcC-------
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEVMLCIQPG------- 318 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ig~v~~~~~~~~~~~~~------- 318 (470)
++|.++|++||++||+||+|+ ++.. .+....+ .+|+++ ++|.++++. ++|++++++++++.+...
T Consensus 163 ~~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~~~--~~d~~~~s~~K~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~ 236 (396)
T 2ch1_A 163 EGVGQICHQHDCLLIVDAVAS-LCGV--PFYMDKW--EIDAVYTGAQKVLGAPP-GITPISISPKALDVIRNRRTKSKVF 236 (396)
T ss_dssp TTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTTT--TCCEEECCCC-CCCCCS-SCEEEEECHHHHHHHHTCSSCCSCG
T ss_pred HHHHHHHHHcCCEEEEEcccc-ccCC--ccchhhc--CcCEEEEcCCccccCCC-CeEEEEECHHHHHhhhhccCcccce
Confidence 999999999999999999998 4322 1222222 357665 459988776 889999999888765321
Q ss_pred ----------------CccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--c
Q 012138 319 ----------------EHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--G 377 (470)
Q Consensus 319 ----------------~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~ 377 (470)
.....++.+..+++++.++++.+.+ +.+.++.+++++++.+.|++++.. .+.... .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~ 313 (396)
T 2ch1_A 237 YWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLD---IFVKDPRHR 313 (396)
T ss_dssp GGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC---BSSCSGGGB
T ss_pred EechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCe---eccCCcccc
Confidence 0112234677788888888887643 457788888899999999886321 111100 1
Q ss_pred cceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhcccCCC
Q 012138 378 RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
.+.++.+.++.. .+..++.+.|.++ ||.+.++ ..+++|+++ ++.++++++++++++|+++++ ++...
T Consensus 314 ~~~~~~~~~~~~---~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~-~~~~~ 386 (396)
T 2ch1_A 314 LPTVTGIMIPKG---VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLK-ATHPD 386 (396)
T ss_dssp CTTEEEEECCTT---CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HHCTT
T ss_pred CCceEEEEcCCC---CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH-HhCcc
Confidence 234666665432 2678899999876 9999875 368999998 567799999999999999999 77543
No 156
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.94 E-value=2.2e-25 Score=228.81 Aligned_cols=322 Identities=12% Similarity=0.038 Sum_probs=214.5
Q ss_pred CCHHHHHHHHHHHHHccc------cCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 92 CHPKIMKALQEQAEKLTL------SSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
.+.++.+++.+.++.... .......++++++++++.+..+ .++|++|+|+++|+..+++++..
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~------ 175 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS------ 175 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC------
Confidence 356677777777775321 1112233567777777776653 46899999999999999997754
Q ss_pred cCCCCC---cEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-------CHHHHHHHHHhcCC--CeEEE
Q 012138 161 KFSIDE---AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-------DITALEKIFKESGD--QIAGF 228 (470)
Q Consensus 161 ~~~~g~---~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~Le~~l~~~~~--~~~~v 228 (470)
+|+ +.|++..++|............. ...++.+ |+++|++++++... ++++|
T Consensus 176 ---~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~-------------~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i 239 (498)
T 3ihj_A 176 ---GGGKSRTGVMIPIPQYPLYSAVISELDAI-------------QVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVL 239 (498)
T ss_dssp ---CCGGGSEEEEEEESCCTHHHHHHHHTTCE-------------EEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEE
T ss_pred ---CCCCCCCEEEEeCCCchhHHHHHHHcCCE-------------EEEeeccccccCCCCHHHHHHHHHhhhccCCCeEE
Confidence 332 48889999987654433322221 1122221 89999999987422 47777
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC--ccccccC----------CCC-cceeeccccc
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR--MLASDWE----------EVR-PDMVILGKAL 295 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~--~~~~~~~----------~~~-pdi~s~sK~l 295 (470)
++..++||||.++ +.+.+++|+++|++||++||+||+|..+.+.+. ...+... ++. .-+.||||.+
T Consensus 240 ~l~np~NPTG~v~-s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 318 (498)
T 3ihj_A 240 CIINPGNPTGQVQ-SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGY 318 (498)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSST
T ss_pred EEECCCCCCCCcC-CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEecccccc
Confidence 7545599999999 899999999999999999999999997655432 2211110 010 1134899999
Q ss_pred c--CCCcceeEEE---ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH-----------HHhh-hhHHHHHHHHHHHHH
Q 012138 296 G--GGVIPVSAVL---ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD-----------VIRD-EKLAERSAHLGEELR 358 (470)
Q Consensus 296 ~--gG~~~ig~v~---~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~-----------~~~~-~~~~~~~~~~~~~l~ 358 (470)
+ +|+ |+||++ .++++++.+.... ....+.+.++++++.++++ .+++ ..++++++++++++.
T Consensus 319 ~G~~G~-R~G~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~ 396 (498)
T 3ihj_A 319 MGECGY-RGGYMEVINLHPEIKGQLVKLL-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTE 396 (498)
T ss_dssp TCCSSS-CCEEEEEESCCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccc-ceEEEEEecCCHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 798 999998 6888888776432 2344567777777666553 2222 345666777777777
Q ss_pred HHHHHHHhhCCCceEEEeccceeEEE-EeccCC--------CchhHHHH--HHHHHHcCceeccC-------CCCEEEEe
Q 012138 359 QHLFKIQQQFPNYVKEVRGRGLFNAV-EFDKTA--------LPVSAYDI--CLKMKERGILAKPT-------HDTIVRLT 420 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~g~~~~~-~~~~~~--------~~~~~~~~--~~~l~~~Gv~~~~~-------~~~~iR~~ 420 (470)
+.|+++ | .+....+.|.|+.| .+..+. .+.+..++ .+.|.++||.+.|+ +.+++|++
T Consensus 397 ~~L~~~----~-g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris 471 (498)
T 3ihj_A 397 DLFNQV----P-GIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMT 471 (498)
T ss_dssp HHHHTS----T-TEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEE
T ss_pred HHHhcC----C-CcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEE
Confidence 777653 2 45556677777766 343221 01123343 44556679998864 24589999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 421 PPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 421 ~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+ ..+++++++++++|.++++ ++.
T Consensus 472 ~--~~~~e~l~~~i~~L~~~~~-~~~ 494 (498)
T 3ihj_A 472 I--LPPVEKLKTVLQKVKDFHI-NFL 494 (498)
T ss_dssp C--CSCHHHHHHHHHHHHHHHH-HHH
T ss_pred e--CCCHHHHHHHHHHHHHHHH-HHH
Confidence 5 5899999999999999988 654
No 157
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.94 E-value=1e-25 Score=228.57 Aligned_cols=337 Identities=11% Similarity=0.117 Sum_probs=208.6
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHcc----ccCCCCC-CCcHHHHHHHHhhhh-CC-------CeEEe--cCCh
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT----LSSRAFY-NDKFPVFAERLTSMF-GY-------DMVLP--MNTG 141 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~-~~~~~~l~~~l~~~~-~~-------~~v~~--~~sG 141 (470)
.+||..+..- .++.+|.+.+++.+++..+. .....|. ..-..++.+.+++++ +. ++|++ |+||
T Consensus 51 ~i~l~~g~~~--d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~gg 128 (448)
T 3meb_A 51 KVNLGVGAYR--DESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSG 128 (448)
T ss_dssp CEEESSCCCC--CTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred eEEeeccccc--CCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcH
Confidence 4677666321 22344444555544432221 1111221 222456666666654 43 58999 9999
Q ss_pred hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh----cccCCcccccCCCCC-CCC-eeeecCCCHHHHH
Q 012138 142 AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI----SMSCDNEAIRGFGPL-LPG-HLKVDFGDITALE 215 (470)
Q Consensus 142 teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~----~~~~~~~~~~~~~~~-~~~-~~~~~~~d~~~Le 215 (470)
++|++.++.+..... +|+ .|++..++|++...... ..+..... .++ ..+ ...+ |+++|+
T Consensus 129 t~al~l~~~~~~~~~-------~gd-~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~----~~~~~~~~~~~~---d~e~l~ 193 (448)
T 3meb_A 129 TGSLHIGFEFLHLWM-------PKA-EFYMPSTTWPNHYGIYDKVFNKLKVPYKE----YTYLRKDGELEI---DFSNTK 193 (448)
T ss_dssp HHHHHHHHHHHHHHC-------TTC-CEEEESSCCTHHHHHHHHHHCTTTSCCEE----ECCBCTTSCSSB---CHHHHH
T ss_pred HHHHHHHHHHHHHhC-------CCC-EEEECCCCCHhHHHHHHhhHHhCCCeEEE----EeccccccCCCc---CHHHHH
Confidence 999998655333211 354 78888999866544333 22221111 111 111 1122 899999
Q ss_pred HHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC---ccccccC-CCCcc---e
Q 012138 216 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---MLASDWE-EVRPD---M 288 (470)
Q Consensus 216 ~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~---~~~~~~~-~~~pd---i 288 (470)
+++++.+.+++++++..++||||.++ +.+.+++|.++|++||+++|+||+|.+|++.+. .+....+ +..++ +
T Consensus 194 ~~l~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (448)
T 3meb_A 194 KDIQSAPEKSIFLFHACAHNPSGIDF-TEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVA 272 (448)
T ss_dssp HHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHHhCCCCcEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEE
Confidence 99986544567777666699999999 899999999999999999999999998876541 1112111 12234 4
Q ss_pred eecccccc-CCCcceeEE--Ee---------cH----HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--------hh
Q 012138 289 VILGKALG-GGVIPVSAV--LA---------DK----EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--------DE 344 (470)
Q Consensus 289 ~s~sK~l~-gG~~~ig~v--~~---------~~----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--------~~ 344 (470)
.||||.++ .|+ |+|++ ++ ++ ++++.+.......+.+.+.+++.++.++|+... -+
T Consensus 273 ~S~SK~~g~~G~-RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~ 351 (448)
T 3meb_A 273 QSFSKNFGLYGE-RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVK 351 (448)
T ss_dssp EECTTTSCCGGG-CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred ecccccCCCccc-cceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 58999998 798 99997 55 34 566555433334455577788877777764321 14
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCC-----ceEEEeccceeEEEEeccCCCchhHHHHHHHH-HHcCceeccCCCCEEE
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPN-----YVKEVRGRGLFNAVEFDKTALPVSAYDICLKM-KERGILAKPTHDTIVR 418 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~iR 418 (470)
.++++++++++++.+.|++++ .|. .+....+.+.++.| +.. .. +++..| .++||.+.|+.. |
T Consensus 352 ~~~~~~~~~r~~l~~~L~~~~--~~~~~~~~~~~~~~~~~g~~~~-~~~-----~~-~~~~~ll~~~gV~v~~G~g---R 419 (448)
T 3meb_A 352 EMSARIHRMRSLLHASLAKRK--TPGPGSKGTWDHILTAIGMFTF-TGL-----TP-EHVDYLKEKWSIYLVKAGG---R 419 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--CCCSTTTCCCTHHHHCCSSEEE-CCC-----CH-HHHHHHHHHHCEEECSGGG---E
T ss_pred HHHHHHHHHHHHHHHHHHhhC--CCCcCcccccceeCCCceEEEe-cCC-----CH-HHHHHHHHhCCEEEeCCCc---E
Confidence 456677777777887777642 111 02223456666666 322 22 455555 556999998642 9
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 419 LTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 419 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|++. ..++++|++++++|.++++ ++.
T Consensus 420 is~a-~~~~~~i~~~~~~l~~~l~-~~~ 445 (448)
T 3meb_A 420 MSMC-GLTESNCDYVAEAIHDAVT-KLP 445 (448)
T ss_dssp EEGG-GCCTTTHHHHHHHHHHHHH-HSC
T ss_pred EEEe-cCCHHHHHHHHHHHHHHHH-hcc
Confidence 9864 3477789999999999998 543
No 158
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.94 E-value=1.4e-25 Score=230.65 Aligned_cols=327 Identities=10% Similarity=0.059 Sum_probs=214.9
Q ss_pred CCHHHHHHHHHHHHHccc-cCCCC-----CCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHHHHHHH-Hhchhcc
Q 012138 92 CHPKIMKALQEQAEKLTL-SSRAF-----YNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLAR-KWGYVKK 160 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~al~~~~-~~~~~~~ 160 (470)
.++++.+++.+.+..... ....| ..++++++++++.+..| .++|++|+|+++|+..+++++. .
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------ 180 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN------ 180 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS------
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC------
Confidence 567788888887776421 11112 22345566666655543 4689999999999999999875 3
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhc---CCCeEEEEEccccCC
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGE 236 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~ 236 (470)
+|+ .|++..++|++.............. . ++..+ .+.+ |+++|++++++. +.++++|++..++||
T Consensus 181 ---~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~-~---~~~~~~~~~~---d~~~l~~~l~~~~~~~~~~k~ivl~~p~NP 249 (500)
T 3tcm_A 181 ---EKD-GILVPIPQYPLYSASIALHGGALVP-Y---YLNESTGWGL---ETSDVKKQLEDARSRGINVRALVVINPGNP 249 (500)
T ss_dssp ---TTE-EEEEEESCCTHHHHHHHHTTCEEEE-E---ECBTTTTSBC---CHHHHHHHHHHHHHTTCEEEEEEEESSCTT
T ss_pred ---CCC-EEEEeCCCcHhHHHHHHHcCCEEEE-E---ecccccCCCC---CHHHHHHHHHHHHhcCCCceEEEEECCCCC
Confidence 344 8888999987655443333221110 0 00000 1122 899999999763 225777774455999
Q ss_pred CccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC--Ccccc----ccCCC---Ccc-ee--eccccc-c-CCCcce
Q 012138 237 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG--RMLAS----DWEEV---RPD-MV--ILGKAL-G-GGVIPV 302 (470)
Q Consensus 237 ~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G--~~~~~----~~~~~---~pd-i~--s~sK~l-~-gG~~~i 302 (470)
||.++ +.+.+++|+++|++||+++|+||+|.++.+.+ ....+ ..++. ..+ ++ ||||++ + +|+ |+
T Consensus 250 tG~~~-s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~-R~ 327 (500)
T 3tcm_A 250 TGQVL-AEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGK-RG 327 (500)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGG-CC
T ss_pred CcccC-CHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCcc-ce
Confidence 99999 89999999999999999999999999765532 22211 11211 112 33 899999 4 688 99
Q ss_pred eEEEe---cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH-----------HHhh-hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 303 SAVLA---DKEVMLCIQPGEHGSTFGGNPLASAVAIASLD-----------VIRD-EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 303 g~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~-----------~~~~-~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
||+++ ++++++.+.... ...++.++++++++..+++ +.+. +.++++++++++++.+.|+++
T Consensus 328 G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 403 (500)
T 3tcm_A 328 GYFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL--- 403 (500)
T ss_dssp EEEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred EEEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 99998 888888775432 3455678888888777764 2222 456667777777777777653
Q ss_pred CCCceEEEeccceeEEE-EeccCCC--------ch-hHHHHH-HHHHHcCceeccC-------CCCEEEEecCCCCCHHH
Q 012138 368 FPNYVKEVRGRGLFNAV-EFDKTAL--------PV-SAYDIC-LKMKERGILAKPT-------HDTIVRLTPPLSISSNE 429 (470)
Q Consensus 368 ~p~~~~~~~~~g~~~~~-~~~~~~~--------~~-~~~~~~-~~l~~~Gv~~~~~-------~~~~iR~~~~~~~t~e~ 429 (470)
| .+....++|.|+.| .+..+.. +. ....++ +.|.++||.+.|+ +.+++|+++. .++++
T Consensus 404 -~-g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~ 479 (500)
T 3tcm_A 404 -E-GITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDK 479 (500)
T ss_dssp -T-TEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTT
T ss_pred -C-CcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHH
Confidence 2 45555677777666 2322110 00 122333 4555679999865 2457999965 89999
Q ss_pred HHHHHHHHHHHHhcccC
Q 012138 430 LQEGSKALHDVLELDLP 446 (470)
Q Consensus 430 i~~~~~~l~~~l~~~~~ 446 (470)
+++++++|.++++ ++.
T Consensus 480 i~~~i~~l~~~~~-~~~ 495 (500)
T 3tcm_A 480 IPAVISRFTVFHE-AFM 495 (500)
T ss_dssp HHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHH-HHH
Confidence 9999999999988 654
No 159
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.94 E-value=2.9e-25 Score=221.28 Aligned_cols=283 Identities=15% Similarity=0.139 Sum_probs=199.3
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++...+++++++++++.+.+++++||++|++.+++.+.+ +|+ .|++..+.|++............
T Consensus 62 r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~~---------~gd-~Vi~~~~~y~~~~~~~~~~~~~~-- 129 (392)
T 3qhx_A 62 RTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAMLR---------PGD-HVVIPDDAYGGTFRLIDKVFTGW-- 129 (392)
T ss_dssp TTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEETTCCHHHHHHHHHTGGGG--
T ss_pred CCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEeCCCcchHHHHHHHHHHhc--
Confidence 345667889999999999999999999999999999997743 344 88889999876433221110000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
...+..++.+|+++|++++++ ++++|++++++||+|.+.| +++|.++|++||+++|+||+|+.+ .
T Consensus 130 -------g~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~-~ 194 (392)
T 3qhx_A 130 -------NVEYTPVALADLDAVRAAIRP---TTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP-A 194 (392)
T ss_dssp -------TCEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT-T
T ss_pred -------CcEEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc-c
Confidence 012456777799999999976 8999999999999999998 999999999999999999999732 1
Q ss_pred cCCccccccCCCCccee--eccccccC-C-CcceeEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-G-VIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G-~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
. ....+..+|++ +++|.+++ | . ++|+++++ +++.+.+.......++..+++.++++...++.+.. ..
T Consensus 195 ~-----~~~~~~~~di~~~S~sK~lg~~g~~-~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~--~~ 266 (392)
T 3qhx_A 195 L-----QQPLSLGADVVLHSTTKYIGGHSDV-VGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVL--RM 266 (392)
T ss_dssp T-----CCGGGGTCSEEEEETTTTTTCSSCC-CCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH--HH
T ss_pred c-----CChHHhCCcEEEEcCccccCCCCCc-eEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH--HH
Confidence 1 12223345776 58999985 4 5 89999987 68887776555556677889988888777765432 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccCCCchhHHHHHHHHHHcCcee
Q 012138 348 ERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGILA 409 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 409 (470)
++..++..++.+.|++. | .+..+ ++.|.++.+++..+. .....+.+.|...|+.+
T Consensus 267 ~~~~~~~~~l~~~L~~~----~-~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~--~~~~~~~~~l~~~~~~~ 339 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEH----P-AISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR--TAAEQLCAKTNIFILAE 339 (392)
T ss_dssp HHHHHHHHHHHHHHHTC----T-TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH--HHHHHHHHHCSSSEECS
T ss_pred HHHHHHHHHHHHHHhcC----C-CcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH--HHHHHHHHhCCCceECC
Confidence 45555566666665542 2 23322 445889999886531 35677887777666654
Q ss_pred ccC------------------------CCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 410 KPT------------------------HDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 410 ~~~------------------------~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+.+ .++.|||++....+++.++.+.++|
T Consensus 340 s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 340 SLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp CCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 432 2467999977665555555555443
No 160
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.93 E-value=1.2e-24 Score=219.63 Aligned_cols=345 Identities=13% Similarity=0.118 Sum_probs=209.1
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC------CCcHHHHHHHHhhhhCC--CeEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY------NDKFPVFAERLTSMFGY--DMVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~--~~v~~~~sGteA 144 (470)
++..|||+.++. +.+|++.+++.++++....++...+ .+...+++++++++++. +++++++||++|
T Consensus 17 ~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 567788876552 4789999999999876322221111 12346899999999875 479999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC----CCCCCeeeecC------CCHHHH
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG----PLLPGHLKVDF------GDITAL 214 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~d~~~L 214 (470)
++.+++.+.+. +......+|+ .|++..|+|++......+..........+. .....+..++. .|+++|
T Consensus 91 ~~~~~~~~~~~-~~~~~~~~gd-~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l 168 (432)
T 3a9z_A 91 NNLVIHSTVRC-FHEQQTLQGR-TVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHH-HHHHHHHC-------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHH
T ss_pred HHHHHHHHHhh-hhhccccCCc-cccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHH
Confidence 99999987520 0000000354 788888999875211100000000000000 00001122221 278999
Q ss_pred HHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC----------cEEEEeccccCCcccCCccccccCCC
Q 012138 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN----------ILMIADEIQSGLARSGRMLASDWEEV 284 (470)
Q Consensus 215 e~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g----------illI~Dev~~g~g~~G~~~~~~~~~~ 284 (470)
++++++ ++++|++++++||+|.+.| +++|.++|++|| ++||+||+|+ ++... +.... .
T Consensus 169 ~~~i~~---~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~--~~~~~--~ 236 (432)
T 3a9z_A 169 LAAVRP---TTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR--VDVED--L 236 (432)
T ss_dssp HHTCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC--CCHHH--H
T ss_pred HHhccC---CceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc--cChhh--c
Confidence 988875 7899998888999999998 899999999999 9999999996 33221 11211 2
Q ss_pred Cccee--eccccccCCCcceeEEEecHHH-HhhcCcCC-------ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHH
Q 012138 285 RPDMV--ILGKALGGGVIPVSAVLADKEV-MLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAH 352 (470)
Q Consensus 285 ~pdi~--s~sK~l~gG~~~ig~v~~~~~~-~~~~~~~~-------~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~ 352 (470)
.+|++ +++|.+ |. ++|++++++++ ...+.+.. ....++.++.+++++.++++.+++ +++.+++++
T Consensus 237 ~~d~~~~s~~K~~--g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~ 313 (432)
T 3a9z_A 237 GVDFLTIVGHKFY--GP-RIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRD 313 (432)
T ss_dssp CCSEEEEEGGGTT--CC-SCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEehhHhc--CC-cceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35665 668976 45 79999998776 44444322 122356788888888888887665 567788888
Q ss_pred HHHHHHHHHHHHHhhCCCceEE------EeccceeEEEEeccCCCchhHHHHHHHHH----HcCceecc-----------
Q 012138 353 LGEELRQHLFKIQQQFPNYVKE------VRGRGLFNAVEFDKTALPVSAYDICLKMK----ERGILAKP----------- 411 (470)
Q Consensus 353 ~~~~l~~~L~~l~~~~p~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~----~~Gv~~~~----------- 411 (470)
+++++.+.|+++... .+.. ....+.+..+.+.... .+..++.+.+. +.|+.+.+
T Consensus 314 ~~~~l~~~L~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~ 388 (432)
T 3a9z_A 314 IRDYLEERLEAEFGK---RIHLNSRFPGVERLPNTCNFSIQGSQ--LRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLL 388 (432)
T ss_dssp HHHHHHHHHHHHHGG---GEEESSCCTTCCBCTTEEEEEECSTT--CCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHH
T ss_pred HHHHHHHHHHhccCC---cEEEeCCCCcccCCCCEEEEEeCCCC--CcHHHHHHHhcCeEEeccccccCCCCCCccHHHH
Confidence 999999999885321 0110 0123445666565311 13455655442 12332222
Q ss_pred --C-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 412 --T-----HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 412 --~-----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+ ..+++||+++..+|++|+++++++|+++++ +++
T Consensus 389 ~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~-~~~ 429 (432)
T 3a9z_A 389 SCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN-QLE 429 (432)
T ss_dssp HTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred hcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHH-Hhc
Confidence 1 137999999988899999999999999988 654
No 161
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.93 E-value=4.8e-25 Score=220.38 Aligned_cols=337 Identities=15% Similarity=0.040 Sum_probs=205.6
Q ss_pred EEeccCCcccccCCCC--CHHHHHHHHHHHHH-ccccCC--CCCCCcHHHHHHHHhhhhC----CCeEEe--cCChhHHH
Q 012138 77 YLDFLSAYSAVNQGHC--HPKIMKALQEQAEK-LTLSSR--AFYNDKFPVFAERLTSMFG----YDMVLP--MNTGAEGV 145 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~-~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~v~~--~~sGteA~ 145 (470)
+|||..|..-...++. .+.+.+++.+.+.. ....+. ....++++.+++++....+ .++|++ |+||++|+
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al 109 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHH
Confidence 5677776431122222 24677777766653 111111 1122445555565554433 678877 99999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-CCeeeecCCCHHHHHHHHHhcCCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-PGHLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
..+++.+..+ .. +|+ .|++..++|++........+. ..... +.. ++...+ |++++++.+++..++
T Consensus 110 ~~~~~~l~~~--~~----~gd-~Vlv~~p~~~~~~~~~~~~g~-~~~~~---~~~~~~~~~~---d~~~l~~~l~~~~~~ 175 (401)
T 7aat_A 110 RVGANFLQRF--FK----FSR-DVYLPKPSWGNHTPIFRDAGL-QLQAY---RYYDPKTCSL---DFTGAMEDISKIPEK 175 (401)
T ss_dssp HHHHHHHHHH--CT----TCC-EEEEEESCCTTHHHHHHHTTC-EEEEE---ECEETTTTEE---CHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHh--cc----CCC-EEEEcCCCchhHHHHHHHcCC-eeEee---eeeccccCcc---CHHHHHHHHHhCCCC
Confidence 9999877532 11 455 788888998765433332221 11100 000 001122 788888888764457
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC---ccccccC-CCCcc---eeecccccc-
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---MLASDWE-EVRPD---MVILGKALG- 296 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~---~~~~~~~-~~~pd---i~s~sK~l~- 296 (470)
++++++..++||||.++ +.+.+++|.++|++||+++|+||+|.+|++.+. .+..... +..++ +.||||.++
T Consensus 176 ~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~ 254 (401)
T 7aat_A 176 SIILLHACAHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGL 254 (401)
T ss_dssp CEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCC
T ss_pred cEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccccc
Confidence 88888777799999999 999999999999999999999999998876542 2111111 11223 359999998
Q ss_pred CCCcceeEEEe---cHH----HHhhcCcCCccCCCCCCHHHHHHHHHHHHH--H----h--hhhHHHHHHHHHHHHHHHH
Q 012138 297 GGVIPVSAVLA---DKE----VMLCIQPGEHGSTFGGNPLASAVAIASLDV--I----R--DEKLAERSAHLGEELRQHL 361 (470)
Q Consensus 297 gG~~~ig~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~--~----~--~~~~~~~~~~~~~~l~~~L 361 (470)
+|+ |+|++++ +++ +.+.+.......+.+.+..+++++...++. + . -++.+++++++++++.+.|
T Consensus 255 ~G~-RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L 333 (401)
T 7aat_A 255 YGE-RAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNL 333 (401)
T ss_dssp GGG-CEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-ceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 898 9999875 555 334333222223334455555555444421 1 1 1345667777788888887
Q ss_pred HHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
++++.. +.+....+.+.++.| ++. +...+...+.++||.+.++ +||+++. .++++|++++++|++++
T Consensus 334 ~~~~~~--~~~~~~~~~~~~~~~-~~~-----~~~~~~~ll~~~gi~v~~~----~Ris~~~-~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 334 KKEGSS--HNWQHITDQIGMFCF-TGL-----KPEQVERLTKEFSIYMTKD----GRISVAG-VASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHTTCC--SCCHHHHHCCSSEEE-CCC-----CHHHHHHHHHHHCEECCTT----CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred HhcCCC--CCCceecCCcceEEe-cCC-----CHHHHHHHHHhCCEeccCC----CeEEecc-CChhhHHHHHHHHHHHh
Confidence 765211 123333456677666 332 3444444446679999765 6998764 45556999999999876
Q ss_pred h
Q 012138 442 E 442 (470)
Q Consensus 442 ~ 442 (470)
+
T Consensus 401 ~ 401 (401)
T 7aat_A 401 K 401 (401)
T ss_dssp C
T ss_pred C
Confidence 3
No 162
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.93 E-value=4.8e-25 Score=220.60 Aligned_cols=284 Identities=12% Similarity=0.050 Sum_probs=195.6
Q ss_pred CCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc---hhcccCCccc
Q 012138 116 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA---AISMSCDNEA 192 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~---~~~~~~~~~~ 192 (470)
.+...++++.++++++.+.+++++||++|+..+++.+.. +|+ .|++..+.|++.... .....+
T Consensus 61 ~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~~---------~gd-~Vl~~~~~y~~~~~~~~~~~~~~g---- 126 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILK---------AGD-HLISDECLYGCTHALFEHALTKFG---- 126 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESCCCHHHHHHHHTHHHHTT----
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHhC---------CCC-EEEEeCCCchhHHHHHHHHHHHcC----
Confidence 445668999999999988999999999999999987643 455 788889998764331 111111
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh-cCcEEEEeccccCCc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-YNILMIADEIQSGLA 271 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~-~gillI~Dev~~g~g 271 (470)
..+..++.+|+++|++++++ ++++|++++++||+|.+++ +++|.++|++ ||+++|+||+|+.+.
T Consensus 127 --------~~~~~v~~~d~~~l~~~i~~---~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~ 191 (404)
T 1e5e_A 127 --------IQVDFINTAIPGEVKKHMKP---NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPM 191 (404)
T ss_dssp --------CEEEEECTTSTTHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTT
T ss_pred --------CEEEEECCCCHHHHHHhcCC---CCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhh
Confidence 11356666789999998875 7899998888999999997 9999999999 999999999999654
Q ss_pred ccCCccccccCCCCcceeecccccc-CCCcce-eEEEecHHHHh-hcCcCCccC-CCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALG-GGVIPV-SAVLADKEVML-CIQPGEHGS-TFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~i-g~v~~~~~~~~-~~~~~~~~~-t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
.. ..+ + ++.+.-+.+++|.++ +|. |+ |++++++++++ .+....... +.+.+++.++++.++++.+. ...
T Consensus 192 ~~-~~~--~-~~~di~~~S~sK~~~~~g~-ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~--~~~ 264 (404)
T 1e5e_A 192 IT-NPV--D-FGVDVVVHSATKYINGHTD-VVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN--IRM 264 (404)
T ss_dssp TC-CGG--G-GTCSEEEEETTTTTTCSSC-CCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH--HHH
T ss_pred hC-Ccc--c-cCCEEEEEcCccccCCCCC-CeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHH--HHH
Confidence 32 111 2 343333448999998 466 87 99999999887 776554443 45678888888887776432 233
Q ss_pred HHHHHHHHHHHHHHHHHH----hhCCC-----ceEE----EeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc---
Q 012138 348 ERSAHLGEELRQHLFKIQ----QQFPN-----YVKE----VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP--- 411 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~----~~~p~-----~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~--- 411 (470)
++...+...+.+.|++.. ..+|. .+.. .++.|.|+.|.+.. ....+.+.|.+.||++..
T Consensus 265 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~~i~~~~~s~ 339 (404)
T 1e5e_A 265 KAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-----GFEGAKKLLDNLKLITLAVSL 339 (404)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-----HHHHHHHHHHTCSSSEESSCC
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-----CHHHHHHHHHhCCCceeccCC
Confidence 334444444444444321 00110 0110 12348899997642 234455556666885432
Q ss_pred C-------------------------C--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 412 T-------------------------H--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 412 ~-------------------------~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+ + ++++||+++. |+++++++.|+++++ .+
T Consensus 340 G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~-~~ 395 (404)
T 1e5e_A 340 GGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLD-AL 395 (404)
T ss_dssp CSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH-HH
T ss_pred CCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHH-HH
Confidence 1 1 5799999765 789999999999887 54
No 163
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.93 E-value=9.1e-25 Score=219.26 Aligned_cols=304 Identities=14% Similarity=0.078 Sum_probs=204.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCC
Q 012138 87 VNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDE 166 (470)
Q Consensus 87 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~ 166 (470)
..+++.+|+..+++.+ ....+.+.....+...+++++++++++.+++++++||++|++.+++.+.. +|+
T Consensus 28 ~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~~---------~gd 96 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALLR---------PGD 96 (412)
T ss_dssp SBCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC---------TTC
T ss_pred ceeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC
Confidence 3566677766655443 22233222234466889999999999999999999999999999987633 354
Q ss_pred cEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhh
Q 012138 167 AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 167 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
.|++..+.|++............. ..+..++. |+++|++++++ ++++|++++++||+|.+.|
T Consensus 97 -~vi~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~-~~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~---- 158 (412)
T 2cb1_A 97 -EVVAAKGLFGQTIGLFGQVLSLMG---------VTVRYVDP-EPEAVREALSA---KTRAVFVETVANPALLVPD---- 158 (412)
T ss_dssp -EEEEETTCCHHHHHHHHHTTTTTT---------CEEEEECS-SHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----
T ss_pred -EEEEeCCCchhHHHHHHHHHHHcC---------CEEEEECC-CHHHHHHHhcc---CCeEEEEeCCCCCCccccc----
Confidence 788888887653322111000000 11234443 48999998875 7999999999999999997
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccC-CCcceeEEEecH--------------
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADK-------------- 309 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~-------------- 309 (470)
+++|.++|++||+++|+||+|++++..... ....+|++ +++|.+++ |. ++|+++..+
T Consensus 159 l~~i~~l~~~~~~~li~D~~~~~~~~~~~~-----~~~~~di~~~S~~K~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~ 232 (412)
T 2cb1_A 159 LEALATLAEEAGVALVVDNTFGAAGALCRP-----LAWGAHVVVESLTKWASGHGS-VLGGAVLSRETELWRNYPQFLQP 232 (412)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGTTTTSCCG-----GGGTCSEEEEETTTTTTCSSC-CCCEEEEECCCSGGGGSGGGGCC
T ss_pred HHHHHHHHHHcCCEEEEECCCccccccCCc-----cccCCeEEEECCcccccCCCC-cEEEEEEeccccccccccccccc
Confidence 999999999999999999999855322211 12345766 58899974 65 888887543
Q ss_pred --------------HHHhhcCcCC-ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 310 --------------EVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 310 --------------~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
++.+.++... ....+..++..++.+...++.+. ...++..++.+++.+.|.+. | .+..
T Consensus 233 ~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~~~~~~~~~~~~l~~~L~~~----~-~v~~ 305 (412)
T 2cb1_A 233 DLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVA--LRVARMSETARFLAERLQGH----P-KVKA 305 (412)
T ss_dssp -------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTC----T-TCSE
T ss_pred cccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHH--HHHHHHHHHHHHHHHHHHcC----C-CeeE
Confidence 3334333221 11223457777777766665442 34455566777777777653 2 2332
Q ss_pred E------------------eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------
Q 012138 375 V------------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----------------------- 413 (470)
Q Consensus 375 ~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------------------- 413 (470)
+ ++.|.++.+.+ . +...+.+.|.+.||.+ .++
T Consensus 306 v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-----~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~ 378 (412)
T 2cb1_A 306 LRYPGLPEDPAHRNARKYLASGGPILTLDL-G-----DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEA 378 (412)
T ss_dssp EECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-----SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHH
T ss_pred EECCCCCCCccHHHHHHhCCCCceEEEEEe-C-----CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHH
Confidence 3 24577888877 3 3556777777789886 331
Q ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 414 -------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 414 -------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
++.+|+++....++++|+.++++|++
T Consensus 379 ~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 379 RLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp HHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred HHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 57899999999999999999988864
No 164
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.93 E-value=3.4e-25 Score=219.89 Aligned_cols=307 Identities=13% Similarity=0.096 Sum_probs=204.1
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC------CeEEecCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY------DMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
.+|++.+++.+.+... .+.. ......++.++++++++. +++++++||++|++.+++.+... ..+|
T Consensus 16 ~~~~v~~a~~~~~~~~--~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~------~~~g 86 (385)
T 2bkw_A 16 LSGAVQKALDVPSLGH--TSPE-FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS------KAPN 86 (385)
T ss_dssp CCHHHHHTTSCCCCCT--TSHH-HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT------TCSC
T ss_pred chHHHHHHHhcccccc--CCHH-HHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhcc------CCCC
Confidence 4578888776543321 1000 011244566666666542 68999999999999999977410 0146
Q ss_pred CcEEEEE-ccCccccccchhcccCCcccccCCCCCCCCeeeecC------CCHHHHHHHHHhcCCCeEEEEEccccCCCc
Q 012138 166 EAIIVSC-CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAG 238 (470)
Q Consensus 166 ~~~ii~~-~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~Le~~l~~~~~~~~~vi~epi~n~~G 238 (470)
+ .|++. .+.||..........+.. +..++. .|+++|++++++. ++++|++++++||+|
T Consensus 87 d-~vlv~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG 151 (385)
T 2bkw_A 87 K-NVLVVSTGTFSDRFADCLRSYGAQ------------VDVVRPLKIGESVPLELITEKLSQN--SYGAVTVTHVDTSTA 151 (385)
T ss_dssp C-EEEEECSSHHHHHHHHHHHHTTCE------------EEEECCSSTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTT
T ss_pred C-eEEEEcCCcchHHHHHHHHHcCCc------------eEEEecCCCCCCCCHHHHHHHHhcC--CCCEEEEEccCCCcC
Confidence 6 55455 666666532222222211 112222 2899999999763 578888888899999
Q ss_pred cccCChhhHHHHHHHHHhc--CcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHh-
Q 012138 239 VIIPPDGYLKAVRDLCSKY--NILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVML- 313 (470)
Q Consensus 239 ~~~~~~~~l~~l~~l~~~~--gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~- 313 (470)
.+.| +++|.++|++| |++||+||+|+ ++.. .+....+ .+|++ +++|+++|+. ++|++++++++++
T Consensus 152 ~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~-G~G~~~~~~~~~~~ 221 (385)
T 2bkw_A 152 VLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW--GVDFALTASQKAIGAPA-GLSISLCSSRFMDY 221 (385)
T ss_dssp EECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT--TCSEEEEESSSTTCCCS-CEEEEEECHHHHHH
T ss_pred eEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc--CceEEEecCccccccCC-cceEEEEcHHHHHH
Confidence 9997 99999999999 99999999997 2211 1222223 34655 5679888765 7899999988876
Q ss_pred hcCc----------------------CCc--cC-CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH-HHH
Q 012138 314 CIQP----------------------GEH--GS-TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHL-FKI 364 (470)
Q Consensus 314 ~~~~----------------------~~~--~~-t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L-~~l 364 (470)
.+.. ... +. .++.++.+++++.++++.+.+ +.+.++.+++++++.+.| +++
T Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 301 (385)
T 2bkw_A 222 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL 301 (385)
T ss_dssp HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5421 001 11 235788888888888887654 346677788888888887 654
Q ss_pred HhhCCCceEEEe------ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----CCEEEEe-cC---CCCCHHH
Q 012138 365 QQQFPNYVKEVR------GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVRLT-PP---LSISSNE 429 (470)
Q Consensus 365 ~~~~p~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~iR~~-~~---~~~t~e~ 429 (470)
+ +.... ..+.++++.+. ...++++.|.++||.+.++. .+++|++ ++ +.+|+++
T Consensus 302 g------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~ 369 (385)
T 2bkw_A 302 Q------LTSVSRYPSNMSAHGLTAVYVA------DPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPY 369 (385)
T ss_dssp C------CEESSCSSSTTBCSSCEEEECS------CHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTH
T ss_pred C------ceecccCcccccCCceEEEecC------CHHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHH
Confidence 1 22221 24666666553 26689999999999998763 5789999 54 3579999
Q ss_pred HHHHHHHHHHHHhccc
Q 012138 430 LQEGSKALHDVLELDL 445 (470)
Q Consensus 430 i~~~~~~l~~~l~~~~ 445 (470)
+++++++|+++++ ++
T Consensus 370 i~~~~~~l~~~~~-~~ 384 (385)
T 2bkw_A 370 MKNCFDLIKLALQ-RK 384 (385)
T ss_dssp HHHHHHHHHHHTT-C-
T ss_pred HHHHHHHHHHHHH-hc
Confidence 9999999999987 64
No 165
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.93 E-value=1.4e-25 Score=222.02 Aligned_cols=303 Identities=14% Similarity=0.141 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEEE
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVSC 172 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~~ 172 (470)
|++.+++.+.++...+ +..+...++++.++++++.+++++++||++|++.+++.+ .. +|+ .|++.
T Consensus 17 ~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~---------~gd-~Vi~~ 82 (373)
T 3frk_A 17 YEIKFKFEEIYKRNWF----ILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIG---------FGD-EVIVP 82 (373)
T ss_dssp HHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCC---------TTC-EEEEE
T ss_pred HHHHHHHHHHHHCCCc----cCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC---------CcC-EEEEC
Confidence 4555566555554322 234567899999999999999999999999999999876 32 454 78889
Q ss_pred ccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHH
Q 012138 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 252 (470)
Q Consensus 173 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~ 252 (470)
.++|++...... ..+.... +.+..++...+ |+++|++++++ ++++|+ ++||+|.+.+ +++|.+
T Consensus 83 ~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~---d~~~l~~~l~~---~~~~v~---~~n~~G~~~~----l~~i~~ 145 (373)
T 3frk_A 83 SNTFIATALAVS-YTGAKPI---FVEPDIRTYNI---DPSLIESAITE---KTKAII---AVHLYGQPAD----MDEIKR 145 (373)
T ss_dssp TTSCTHHHHHHH-HHSCEEE---EECEETTTTEE---CGGGTGGGCCT---TEEEEE---EECCTTCCCC----HHHHHH
T ss_pred CCCcHHHHHHHH-HcCCEEE---EEeccccccCc---CHHHHHHhcCC---CCeEEE---EECCCcCccc----HHHHHH
Confidence 999876443332 2221111 01111111122 78999888875 788888 3789999987 999999
Q ss_pred HHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccC-CCcceeEEEec-HHHHhhcCcC-------
Q 012138 253 LCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLAD-KEVMLCIQPG------- 318 (470)
Q Consensus 253 l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~g-G~~~ig~v~~~-~~~~~~~~~~------- 318 (470)
+|++||++||+||+|+ |.... ....+..+|++++| |.+++ | ..|+++++ +++.+.++..
T Consensus 146 l~~~~~~~li~D~a~~~g~~~~-----~~~~~~~~d~~~~S~~~~K~l~~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~ 218 (373)
T 3frk_A 146 IAKKYNLKLIEDAAQAHGSLYK-----GMKVGSLGDAAGFSFYPAKNLGSLG--DGGAVVTNDKDLAEKIKALSNYGSEK 218 (373)
T ss_dssp HHHHHTCEEEEECTTCTTCEET-----TEETTSSSSEEEEECCTTSSSCCSS--SCEEEEESCHHHHHHHHHHHBTTCSB
T ss_pred HHHHcCCEEEEECCcccCCEEC-----CEeccccccEEEEeCcCCCccCccc--eeEEEEeCCHHHHHHHHHHHhcCccc
Confidence 9999999999999998 22222 23344445887666 99987 6 46777765 4565544321
Q ss_pred -----CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCch
Q 012138 319 -----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393 (470)
Q Consensus 319 -----~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~ 393 (470)
..+.++..+++.++++...++.+ +++.++.+++.+++.+.|.++....| .... .....+..+.+...
T Consensus 219 ~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~---- 290 (373)
T 3frk_A 219 KYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPNVIIP-VEAD-YAKHVWYTFVIRSE---- 290 (373)
T ss_dssp TTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTTEECC-CCCT-TEECCCSSEEEEES----
T ss_pred CCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCceEec-cCCC-CCceeeEEEEEEeC----
Confidence 12334556788877776665544 34667777777777777765431111 0000 01112222222221
Q ss_pred hHHHHHHHHHHcCceeccCC---------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 394 SAYDICLKMKERGILAKPTH---------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 394 ~~~~~~~~l~~~Gv~~~~~~---------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+..++.+.|.++||.+.+.. ...+|+++...+|++||+++++.|+++..
T Consensus 291 ~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 291 KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 57789999999999987442 16899999999999999999999988765
No 166
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.93 E-value=1.5e-24 Score=218.24 Aligned_cols=318 Identities=15% Similarity=0.157 Sum_probs=196.9
Q ss_pred CCHHHHHHHHHHHH-HccccC--CCC-----CCCcHHHHH-HHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAE-KLTLSS--RAF-----YNDKFPVFA-ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~-~~~~~~--~~~-----~~~~~~~l~-~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.||+|.+++.+++. .+.... ..+ ..+...+++ +++++.++.+.+ ++++||++|++.+++.+..
T Consensus 44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~------- 116 (425)
T 3ecd_A 44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAK------- 116 (425)
T ss_dssp CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHccC-------
Confidence 48999999998884 221111 011 123445665 678888898877 4599999999999987743
Q ss_pred CCCCCcEEEEEccCccccc-cchhc-ccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcc
Q 012138 162 FSIDEAIIVSCCGCFHGRT-LAAIS-MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 239 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~ 239 (470)
+|+ .|++..++|++.. ..... ..+. .+...+.+..++...+ |+++|++++++. ++++|++++.+| |.
T Consensus 117 --~gd-~Vi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~---d~~~l~~~i~~~--~~~~v~~~~~~~--~~ 185 (425)
T 3ecd_A 117 --PGD-TVLGMSLDAGGHLTHGAKPALSGK-WFNALQYGVSRDTMLI---DYDQVEALAQQH--KPSLIIAGFSAY--PR 185 (425)
T ss_dssp --TTC-EEEEECC-------------------CEEEEECCCTTTSSC---CHHHHHHHHHHH--CCSEEEEECSCC--CS
T ss_pred --CCC-EEEEcccccccceecchhhhhccc-ceeeeecCCCcccCcc---CHHHHHHHHhhc--CCcEEEEccccC--CC
Confidence 455 7888899987722 22111 1111 0110001111111122 899999999753 678888774355 34
Q ss_pred ccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--eccccccCCCcceeEEEec-HHHHhhc
Q 012138 240 IIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLAD-KEVMLCI 315 (470)
Q Consensus 240 ~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~-~~~~~~~ 315 (470)
..+ +++|.++|++||++||+||+|. |+.+.+..+... . .+|++ +++|+++ |. ++|+++++ +++.+.+
T Consensus 186 ~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~--~-~~di~~~s~sK~l~-g~-~~g~~~~~~~~~~~~~ 256 (425)
T 3ecd_A 186 KLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPV--E-HAHVVTSTTHKTLR-GP-RGGFVLTNDEEIAKKI 256 (425)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG--G-TCSEEEEESSGGGC-CC-SCEEEEESCHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCch--h-cCcEEEecCCcccC-CC-CcEEEEeCCHHHHHHH
Confidence 444 8999999999999999999976 554555433211 1 13555 7779994 55 88999987 5676666
Q ss_pred CcCCccCC-CCCCHHHHHHHHHHHHH-Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEEEEeccC
Q 012138 316 QPGEHGST-FGGNPLASAVAIASLDV-IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKT 389 (470)
Q Consensus 316 ~~~~~~~t-~~~~~~~~aaa~a~l~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~~~~~~~ 389 (470)
......+. .+.+...++++.+++.. +.+ +++.++++++++++.+.|.+.+ +.... +.+.++++.+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~~~~~ 330 (425)
T 3ecd_A 257 NSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG------VDLVTGGTDNHLLLVDLRPK 330 (425)
T ss_dssp HHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGGGSCSSSEEEEECGGG
T ss_pred HhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC------CeeccCCCCceEEEEEeCCC
Confidence 54322222 23444444444444443 322 4677888888888888887742 22222 3566777766432
Q ss_pred CCchhHHHHHHHHHHcCceec----cCC------CCEEEEecCCC----CCHHHHHHHHHHHHHHHhccc
Q 012138 390 ALPVSAYDICLKMKERGILAK----PTH------DTIVRLTPPLS----ISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 390 ~~~~~~~~~~~~l~~~Gv~~~----~~~------~~~iR~~~~~~----~t~e~i~~~~~~l~~~l~~~~ 445 (470)
. .+...+.+.|.++||.+. |+. .+.+|++++.. ++++++++++++|+++++ +.
T Consensus 331 ~--~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~-~~ 397 (425)
T 3ecd_A 331 G--LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFE-AL 397 (425)
T ss_dssp T--CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred C--CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHh-cc
Confidence 2 256788889999999988 431 35899996544 459999999999999998 65
No 167
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-24 Score=222.11 Aligned_cols=330 Identities=11% Similarity=0.059 Sum_probs=218.1
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCC------CCcHHHHHHHHhhhhCCC----eEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 91 HCHPKIMKALQEQAEKLTLSSRAFY------NDKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~----~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
+.++.+.+++.+++......+...+ ..+..++++++++++|.+ .+++++||++|+..++++++.++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3568999999999887543221111 233457788888888765 799999999999999999987544333
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
|.+ ++.|++..++| .....+....+...... +...+...+ |+++|++++++ ++++|+++.++||+|.+
T Consensus 155 g~~--~~~Vi~~~~~h-~~~~~~~~~~G~~~~~v---~~~~~~~~~---d~~~l~~~i~~---~~~~v~~~~p~nptG~~ 222 (497)
T 3mc6_A 155 GIT--EPEIIAPVTAH-AGFDKAAYYFGMKLRHV---ELDPTTYQV---DLGKVKKFINK---NTVLLVGSAPNFPHGIA 222 (497)
T ss_dssp CCS--SCEEEEETTSC-HHHHHHHHHSCCEEEEE---CBCTTTCSB---CTTTTGGGCCS---SEEEEEEETTCTTTCCC
T ss_pred CCC--CceEEEeCCcc-HHHHHHHHHcCCeEEEE---ecCcccCcC---CHHHHHHHHhh---CCEEEEEECCCCCCCcC
Confidence 321 23777777775 44444433333221111 111101122 78889988875 78999988889999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccCCccc-------CC--ccccccCCCCccee--eccccccCCCcceeEEEecH
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARS-------GR--MLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADK 309 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~-------G~--~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~ 309 (470)
.| +++|.++|++||++||+||+|+++... |. .+.....++ |++ ++.|.+.+|. ++|++++++
T Consensus 223 ~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~-~~g~~~~~~ 295 (497)
T 3mc6_A 223 DD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPK-GSSVIMYRN 295 (497)
T ss_dssp CS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCS-SCEEEECSS
T ss_pred CC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCC-CceeEEecC
Confidence 97 899999999999999999999865332 11 133334454 554 5568887887 999999877
Q ss_pred HHHhhcCcC----CccCC-----C--CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 310 EVMLCIQPG----EHGST-----F--GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 310 ~~~~~~~~~----~~~~t-----~--~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
+.+...... ..++. + +.+....+++.++++.+.+ .++.++..++++++.+.|++. .| .+..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~~-g~~~~ 371 (497)
T 3mc6_A 296 SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN---IP-DLDIM 371 (497)
T ss_dssp HHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CT-TCEEC
T ss_pred HHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CC-CEEEe
Confidence 665543211 11111 1 1223334445555665554 345566777778888877762 12 23322
Q ss_pred -eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 376 -RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 376 -~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
.+.+.++.|.... .+..++.+.|.++||.+.... ++.+|++++ .+|++++++++++|+++++ ++.+..
T Consensus 372 ~~~~~~~v~~~~~~----~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~-~~~~~~ 441 (497)
T 3mc6_A 372 GNPRYSVISFSSKT----LNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQ-ELKSES 441 (497)
T ss_dssp SCCCSSEEEEECTT----TTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHH-HHTCC-
T ss_pred cCCCeeEEEEeCCC----CCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHH-HHHhCc
Confidence 3556666665432 367899999999999887653 567899988 7899999999999999999 876543
No 168
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.93 E-value=2.9e-25 Score=222.42 Aligned_cols=286 Identities=18% Similarity=0.181 Sum_probs=196.4
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
..+.++...+++++++++.|.+.+++++||++|++.+++.+.+ +|+ .|++..++|++..........
T Consensus 76 ~r~~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~~---------~Gd-~Vi~~~~~y~~~~~~~~~~~~--- 142 (414)
T 3ndn_A 76 SRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLG---------AGD-RLVAARSLFGSCFVVCSEILP--- 142 (414)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC---------TTC-EEEEESCCCHHHHHHHHTHHH---
T ss_pred CCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEcCCccchHHHHHHHHHH---
Confidence 3455677899999999999999999999999999999987643 455 788899998874332211000
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
.....+..++.+|+++|++++++ ++++|++++++||+|.+.+ +++|.++|++||++||+||+|+
T Consensus 143 ------~~g~~~~~v~~~d~~~l~~ai~~---~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~--- 206 (414)
T 3ndn_A 143 ------RWGVQTVFVDGDDLSQWERALSV---PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA--- 206 (414)
T ss_dssp ------HTTCEEEEECTTCHHHHHHHTSS---CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT---
T ss_pred ------HcCcEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCc---
Confidence 00112467777899999999976 7889999999999999997 9999999999999999999997
Q ss_pred ccCCccccccCCCCcceeeccccccC-C-CcceeEEEecHHHHh-hcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALGG-G-VIPVSAVLADKEVML-CIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~g-G-~~~ig~v~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
+|..+....++.+..+.+++|.+++ | + ++|+++++++.+. .+...........++..++++...++.+. ...+
T Consensus 207 -~~~~~~~~~~g~div~~S~sK~l~~~G~~-~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~ 282 (414)
T 3ndn_A 207 -TPLLQQGFPLGVDVVVYSGTKHIDGQGRV-LGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLA--IRVQ 282 (414)
T ss_dssp -HHHHCCCGGGTCSEEEEETTTTTTCSSCC-CCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--HHHH
T ss_pred -ccccCCchhcCCCeEeccCCccccCCCCc-eEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH--HHHH
Confidence 2211112234555556689999986 6 5 8999999988765 44422111222346777666665555442 2344
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccC----CCchhHHHHHHHHHHcC
Q 012138 349 RSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKT----ALPVSAYDICLKMKERG 406 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~----~~~~~~~~~~~~l~~~G 406 (470)
+..+++.++.+.|++. | .+..+ ++.|.++++++... . ....++.+.|...+
T Consensus 283 ~~~~~a~~l~~~L~~~----p-~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~--~~~~~~~~~l~~~~ 355 (414)
T 3ndn_A 283 HSNASAQRIAEFLNGH----P-SVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAK--QRAFEVLDKMRLID 355 (414)
T ss_dssp HHHHHHHHHHHHHHTC----T-TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHH--HHHHHHHHHCSSSE
T ss_pred HHHHHHHHHHHHHhcC----C-CEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccH--HHHHHHHHhCccce
Confidence 5555566666666543 2 22222 45688999988642 1 25677788777666
Q ss_pred ceeccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 407 ILAKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 407 v~~~~~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+.++.+ .++.+||++.+ |+++++++.|+++|
T Consensus 356 ~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 356 ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp ECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred EcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 554432 25789999544 66777777777765
No 169
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.93 E-value=3.2e-24 Score=214.32 Aligned_cols=289 Identities=15% Similarity=0.119 Sum_probs=198.7
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+..+...+++++++++++.+.+++++||++|+..+++.+.. +|+ .|++..+.||+.......+.....
T Consensus 62 ~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~~~~~g-- 129 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLR---------PGD-EVLLGNTLYGCTFAFLHHGIGEFG-- 129 (398)
T ss_dssp -CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESSCCSHHHHHHHHTGGGGT--
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhc---------CCC-EEEEeCCCchhHHHHHHHHHHHcC--
Confidence 35667889999999999988999999999999999997743 344 788899998765433211111000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..+..++.+|+++|++++++ ++++|++++++||+|.+.| +++|.++|++||+++|+||+|+.+. .
T Consensus 130 -------~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~-~ 194 (398)
T 1gc0_A 130 -------VKLRHVDMADLQALEAAMTP---ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPY-L 194 (398)
T ss_dssp -------CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHH-H
T ss_pred -------CEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCcccc-c
Confidence 11345666799999999875 7999999999999999997 9999999999999999999998432 1
Q ss_pred CCccccccCCCCcceeeccccccC-CCcce-eEEEecHHHHh-hcCcCCcc-CCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 012138 274 GRMLASDWEEVRPDMVILGKALGG-GVIPV-SAVLADKEVML-CIQPGEHG-STFGGNPLASAVAIASLDVIRDEKLAER 349 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~s~sK~l~g-G~~~i-g~v~~~~~~~~-~~~~~~~~-~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 349 (470)
+... .++.+..+.+++|.+++ |. |+ |++++++++++ .+...... .+.+.+++.++++.++++.+. ...++
T Consensus 195 ~~~~---~~~~d~~~~S~sK~~~~~~~-~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~ 268 (398)
T 1gc0_A 195 QRPL---ELGADLVVHSATKYLSGHGD-ITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLN--LRMDR 268 (398)
T ss_dssp CCGG---GGTCSEEEEETTTTTTCSSS-CCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHH--HHHHH
T ss_pred CCch---hhCceEEEECCccccCCCCC-CeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchHH--HHHHH
Confidence 2211 23444455689999994 55 77 88989887665 45443333 445678888888877776542 23445
Q ss_pred HHHHHHHHHHHHHHHHh----hCCC-----ceEE----EeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc---C-
Q 012138 350 SAHLGEELRQHLFKIQQ----QFPN-----YVKE----VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP---T- 412 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~----~~p~-----~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~---~- 412 (470)
..++...+.+.|+++.. .+|. .+.. .++.|.++.+.+.. ....+.+.+.+.|+.+.. +
T Consensus 269 ~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~l~~~~i~~~~~s~G~ 343 (398)
T 1gc0_A 269 HCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-----GIGAGRRFMNALQLFSRAVSLGD 343 (398)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-----HHHHHHHHHHHCSSSEECSCCSC
T ss_pred HHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-----CHHHHHHHHHhCCCceeccCCCC
Confidence 55555566665554210 0110 0000 13568888887752 234455666666776532 1
Q ss_pred --------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 413 --------------------------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 413 --------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.++.+||+++...++++|+.+.++|+++
T Consensus 344 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 344 AESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 1479999999999999999999988765
No 170
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=1.3e-24 Score=216.51 Aligned_cols=311 Identities=15% Similarity=0.159 Sum_probs=211.4
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIV 170 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii 170 (470)
-++++.+++.++++...+. +.+...++++.++++++.+++++++||++|++.+++++ .. +|+ .|+
T Consensus 18 ~~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~---------~gd-~Vl 83 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGWIT----TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIG---------EGD-EVI 83 (393)
T ss_dssp CCHHHHHHHHHHHHHTCCS----SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCC---------TTC-EEE
T ss_pred CCHHHHHHHHHHHhcCCcC----CChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCC---------CCC-EEE
Confidence 3588999999998775322 34557889999999999999999999999999999876 32 454 788
Q ss_pred EEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHH
Q 012138 171 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAV 250 (470)
Q Consensus 171 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l 250 (470)
+..++|++..... ...+..... .+..++...+ |+++|++++++ ++++|++++ ++|.+.+ +++|
T Consensus 84 ~~~~~~~~~~~~~-~~~g~~~~~---v~~~~~~~~~---d~~~l~~~l~~---~~~~v~~~~---~~G~~~~----~~~i 146 (393)
T 1mdo_A 84 TPSMTWVSTLNMI-VLLGANPVM---VDVDRDTLMV---TPEHIEAAITP---QTKAIIPVH---YAGAPAD----LDAI 146 (393)
T ss_dssp EESSSCHHHHHHH-HHTTCEEEE---ECBCTTTCCB---CHHHHHHHCCT---TEEEECCBC---GGGCCCC----HHHH
T ss_pred eCCCccHhHHHHH-HHCCCEEEE---EeccCCcCCC---CHHHHHHhcCC---CceEEEEeC---CCCCcCC----HHHH
Confidence 8999987654332 222221111 1111111122 89999999875 788888654 7898887 9999
Q ss_pred HHHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEEec-HHHHhhcCcCCc----
Q 012138 251 RDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPGEH---- 320 (470)
Q Consensus 251 ~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~~~-~~~~~~~~~~~~---- 320 (470)
.++|++||+++|+||+|+ |+.+.+.. ++. +|++++| |.++|| ++|+++.+ +++++.+.....
T Consensus 147 ~~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l~~~~~~~~~ 218 (393)
T 1mdo_A 147 YALGERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLG 218 (393)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEE
T ss_pred HHHHHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHHHHHHhcCCc
Confidence 999999999999999998 44344432 222 5777555 888775 78999986 777776543211
Q ss_pred --------------------cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceE--EEecc
Q 012138 321 --------------------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK--EVRGR 378 (470)
Q Consensus 321 --------------------~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~--~~~~~ 378 (470)
+..+..+++.++++...++.++ ++.++.+++.+++.+.|.++..+++ ... ..++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~ 295 (393)
T 1mdo_A 219 VDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMADLPFQPL-SLPSWEHIHA 295 (393)
T ss_dssp CC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTSSCEEC-CCCSSCEECC
T ss_pred ccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCcccc-cCCCCCCCce
Confidence 1113357777777776665443 4566667777788877766421100 000 12234
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------------------------CCEEEEecCCCCCHHHHHHH
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------------------~~~iR~~~~~~~t~e~i~~~ 433 (470)
+.++++.++....+.+..++.+.|.++||.+.++. .+.+|+++...+|++|++++
T Consensus 296 ~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~ 375 (393)
T 1mdo_A 296 WHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRV 375 (393)
T ss_dssp CSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHH
T ss_pred eEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHH
Confidence 45677766520000257889999999999987643 23799998888999999999
Q ss_pred HHHHHHHHhccc
Q 012138 434 SKALHDVLELDL 445 (470)
Q Consensus 434 ~~~l~~~l~~~~ 445 (470)
+++|+++++ ..
T Consensus 376 ~~~l~~~~~-~~ 386 (393)
T 1mdo_A 376 ITALHQIAG-QG 386 (393)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHh-cC
Confidence 999999987 54
No 171
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.93 E-value=3.7e-25 Score=221.85 Aligned_cols=332 Identities=12% Similarity=0.097 Sum_probs=211.3
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhh-C-------CCeE--EecCChhHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMF-G-------YDMV--LPMNTGAEG 144 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~-~-------~~~v--~~~~sGteA 144 (470)
.+|||..+... ....+|.+.+++.++..... ..| ...-..++.+.+++++ + .+++ ..+++|++|
T Consensus 42 ~~i~l~~g~~~--d~~~~~~v~~a~~~a~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga 116 (409)
T 4eu1_A 42 RKVNLSIGVYR--DDADQPFVLECVKQATLGTN---MDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGA 116 (409)
T ss_dssp SCEECCCSSCC--CTTSCCCCCHHHHTCCCCSC---CCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHH
T ss_pred CceeeeeeEEE--CCCCCEeecHHHHhcCcccc---ccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHH
Confidence 46788877421 33366778888877622111 112 1222356666666653 3 3456 448999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-CCeeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-PGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
++.+..++... .. +|+ .|++..++|++........+.. .... +.. .+...+ |+++|++.++++..
T Consensus 117 ~~~~~~~~~~~--~~----~gd-~Vlv~~p~y~~~~~~~~~~g~~-~~~~---~~~~~~~~~~---d~~~l~~~l~~~~~ 182 (409)
T 4eu1_A 117 LRIGGDLLNRF--VA----NCN-RIYGPDVGYPNHESIFAKAGME-LTPY---SYYDPATKGL---NLAGMLECLDKAPE 182 (409)
T ss_dssp HHHHHHHGGGT--SS----SCC-EEEEESSCCTHHHHHHHHTTCE-EEEE---CCEETTTTEE---CHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHh--cC----CCC-EEEEeCCCcHhHHHHHHHcCCe-EEEE---EeecCcCCcC---cHHHHHHHHHhCCC
Confidence 99887655432 11 344 8888999986654433322221 1100 100 011122 89999999986444
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC---ccccc-cCCCCcce---eecccccc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---MLASD-WEEVRPDM---VILGKALG 296 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~---~~~~~-~~~~~pdi---~s~sK~l~ 296 (470)
+++++++..++||||.++ +.+.+++|.++|++||+++|+||+|.+|++.+. ..... ..+..+++ .||||.++
T Consensus 183 ~~~~i~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 261 (409)
T 4eu1_A 183 GSVILVHACAHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG 261 (409)
T ss_dssp TCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS
T ss_pred CcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc
Confidence 566666544599999999 899999999999999999999999998876652 11111 11333444 38999998
Q ss_pred -CCCcceeEE---EecHH----HHhhcCcCCccCCCCCCHHHHHHHHHHHHHH-------h-hhhHHHHHHHHHHHHHHH
Q 012138 297 -GGVIPVSAV---LADKE----VMLCIQPGEHGSTFGGNPLASAVAIASLDVI-------R-DEKLAERSAHLGEELRQH 360 (470)
Q Consensus 297 -gG~~~ig~v---~~~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~-------~-~~~~~~~~~~~~~~l~~~ 360 (470)
+|+ |+|++ +++++ +++.+.......+++.++++++++.++|+.. + .+.++++++++++++.+.
T Consensus 262 ~~G~-riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 262 LYGH-RCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp CGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccC-CceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 898 99995 56777 6555544333445667788888888877632 1 145667777888888888
Q ss_pred HHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 361 LFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 361 L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
|++++. |..+....+.|.++.| ++. .. +++..|+ ++||.+.|+. ||+++ ..+++++++++++|++
T Consensus 341 L~~~g~--~~~~~~~~~~~~~~~~-~~~-----~~-~~~~~ll~~~gv~v~p~~----Ri~~~-~~~~~~i~~~~~~l~~ 406 (409)
T 4eu1_A 341 LKACGS--VHDWSHIERQVGMMAY-TGL-----TR-EQVELLRSEYHIYMTLNG----RAAVS-GLNSTNVEYVSQAIHN 406 (409)
T ss_dssp HHHTTC--CSCCHHHHHSCSSEEE-CCC-----CH-HHHHHHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHH
T ss_pred HHhcCC--CCCcceecCCceEEEE-eCC-----CH-HHHHHHHHcCCEEEcCCC----EEEEE-ecCHhhHHHHHHHHHH
Confidence 877521 1112233456777766 332 22 3455665 5699998863 77765 3567789999999998
Q ss_pred HHh
Q 012138 440 VLE 442 (470)
Q Consensus 440 ~l~ 442 (470)
+++
T Consensus 407 ~l~ 409 (409)
T 4eu1_A 407 VTK 409 (409)
T ss_dssp HHC
T ss_pred HhC
Confidence 764
No 172
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.93 E-value=1.4e-24 Score=217.17 Aligned_cols=329 Identities=13% Similarity=0.078 Sum_probs=215.0
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHH-Hcccc--CCC-CC-CCcHHHHH----HHHhhhhCCCeE-EecCChhHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAE-KLTLS--SRA-FY-NDKFPVFA----ERLTSMFGYDMV-LPMNTGAEGV 145 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~--~~~-~~-~~~~~~l~----~~l~~~~~~~~v-~~~~sGteA~ 145 (470)
.++|+.++ .++ +|++.+++.+++. .+... ... +. .+...+++ ++++++++.+.. +++++|++|+
T Consensus 25 ~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~ 98 (405)
T 2vi8_A 25 KIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQAN 98 (405)
T ss_dssp SEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred ceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHH
Confidence 35666544 232 8999999999885 33221 111 11 12234444 689998887764 4567889999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch--hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA--ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
+.+++++.. +|+ .|++..++|++..... ....+. .......+..++... .|+++|++++++.
T Consensus 99 ~~a~~~~~~---------~gd-~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~---~d~~~l~~~i~~~-- 162 (405)
T 2vi8_A 99 MAVYFTVLE---------HGD-TVLGMNLSHGGHLTHGSPVNFSGV-QYNFVAYGVDPETHV---IDYDDVREKARLH-- 162 (405)
T ss_dssp HHHHHHHCC---------TTC-EEEEECGGGTCCTTTTCTTSHHHH-HSEEEEECBCTTTCS---BCHHHHHHHHHHH--
T ss_pred HHHHHHhcC---------CCC-EEEEecccccchhcccchhhhccc-eeEEEecccccccCC---cCHHHHHHHHHhc--
Confidence 999998743 454 7777777754432211 111110 000000010001111 2899999999863
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC-Cccee--eccccccCCCc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMV--ILGKALGGGVI 300 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~--s~sK~l~gG~~ 300 (470)
++++|+++| ++. |...+ +++|.++|++||++||+||+|+ ++..+... ....+ .+|++ +++|+++|+.
T Consensus 163 ~~~~v~~~~-~~~-~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~~~~~~di~~~s~sK~~~g~~- 232 (405)
T 2vi8_A 163 RPKLIVAAA-AAY-PRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPNPVPYAHFVTTTTHKTLRGPR- 232 (405)
T ss_dssp CCSEEEECC-SSC-CSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCCSTTTCSEEEEESSSTTCCCS-
T ss_pred CCeEEEEeC-CCC-CccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCCccccCCEEEEeccccCCCCC-
Confidence 567888866 332 44444 9999999999999999999998 33322111 11111 35766 8899998665
Q ss_pred ceeEEEecHHHHhhcCcCCccCCCC-CCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 301 PVSAVLADKEVMLCIQPGEHGSTFG-GNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
. |++++++++++.+.......+++ .++..++++.++++.+.+ +++.++++++++++.+.|++++ +....
T Consensus 233 g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~ 305 (405)
T 2vi8_A 233 G-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEG------FTLVS 305 (405)
T ss_dssp C-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGG
T ss_pred C-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC------CeEec
Confidence 5 99999999888776543333444 467777777788887654 5678888888999998888752 22221
Q ss_pred --ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----------CCCEEEEecCC----CCCHHHHHHHHHHHHHH
Q 012138 377 --GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVRLTPPL----SISSNELQEGSKALHDV 440 (470)
Q Consensus 377 --~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------~~~~iR~~~~~----~~t~e~i~~~~~~l~~~ 440 (470)
+.+.++++.+.... .+..++.+.|.++||.+.++ ..+++|++++. .++++++++++++|+++
T Consensus 306 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 306 GGTDNHLLLVDLRPQQ--LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp GSCSSSEEEEECGGGT--CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEccCCC--CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHH
Confidence 35677777665321 25678999999999998764 25689999886 57899999999999999
Q ss_pred HhcccC
Q 012138 441 LELDLP 446 (470)
Q Consensus 441 l~~~~~ 446 (470)
++ ++.
T Consensus 384 ~~-~~~ 388 (405)
T 2vi8_A 384 LK-NVG 388 (405)
T ss_dssp HT-CTT
T ss_pred Hh-ccc
Confidence 98 764
No 173
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.93 E-value=3.4e-25 Score=219.24 Aligned_cols=298 Identities=14% Similarity=0.228 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEEEcc
Q 012138 96 IMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVSCCG 174 (470)
Q Consensus 96 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~~~~ 174 (470)
+.+++.+.+....+ +..+...++++.++++++.+++++++||++|++.+++.+ .. +|+ .|++..+
T Consensus 21 ~~~~~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~---------~gd-~v~~~~~ 86 (374)
T 3uwc_A 21 YLNDLREFIKTADF----TLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIG---------AGD-EVITCAN 86 (374)
T ss_dssp HHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCC---------TTC-EEEEESS
T ss_pred HHHHHHHHHHcCCc----ccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC---------CCC-EEEECCC
Confidence 77777777665432 234567899999999999999999999999999999876 32 444 8888999
Q ss_pred CccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 175 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 175 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
+|++........+.. ...++.+ |+++|++++++ ++++|+ ++||+|.+.+ +++
T Consensus 87 ~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~---~~n~~G~~~~----~~~ 143 (374)
T 3uwc_A 87 TFIASVGAIVQAGAT-------------PVLVDSENGYVIDPEKIEAAITD---KTKAIM---PVHYTGNIAD----MPA 143 (374)
T ss_dssp SCHHHHHHHHHTTCE-------------EEEECBCTTSSBCGGGTGGGCCT---TEEEEC---CBCGGGCCCC----HHH
T ss_pred ccHHHHHHHHHcCCE-------------EEEEecCCCCCcCHHHHHHhCCC---CceEEE---EeCCcCCcCC----HHH
Confidence 987765443322221 1223322 78889888875 788887 4889999987 999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc----ccccC-CCcceeEEEec-HHHHhhcCcCC----
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLAD-KEVMLCIQPGE---- 319 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s----K~l~g-G~~~ig~v~~~-~~~~~~~~~~~---- 319 (470)
|.++|++||+++|+||+|+.+.. +.....+..+|++++| |.+++ | ..|+++++ +++.+.+....
T Consensus 144 i~~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g--~~g~~~~~~~~~~~~~~~~~~~~~ 217 (374)
T 3uwc_A 144 LAKIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWS--DAGVIITHSDEYAEKLRLYRNHGL 217 (374)
T ss_dssp HHHHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSS--CCEEEEESCHHHHHHHHHHTBTTE
T ss_pred HHHHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccc--eeEEEEeCCHHHHHHHHHHHhcCc
Confidence 99999999999999999983211 2223344446887666 99987 6 46777764 45655443211
Q ss_pred --------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh--hCCCceEEEeccceeEEEEeccC
Q 012138 320 --------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ--QFPNYVKEVRGRGLFNAVEFDKT 389 (470)
Q Consensus 320 --------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~--~~p~~~~~~~~~g~~~~~~~~~~ 389 (470)
.+.++..+++.++++...++.+ +++.++.+++.+++.+.|.++.. ..| .... .....++.+.+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 293 (374)
T 3uwc_A 218 INRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVP-VRRE-GVYHVFHIYVLRVK 293 (374)
T ss_dssp EETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECC-CCCT-TEECCCSSEEEEET
T ss_pred cccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEec-cCCC-CCceeeEEEEEEcC
Confidence 2233445677766665544433 44667777888888887776531 111 0000 01122222222221
Q ss_pred CCchhHHHHHHHHHHcCceeccCC---------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 390 ALPVSAYDICLKMKERGILAKPTH---------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 390 ~~~~~~~~~~~~l~~~Gv~~~~~~---------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+..++.+.|.++||.+.++. .+.+|++++..+|++||++++++|+++++
T Consensus 294 ----~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~ 369 (374)
T 3uwc_A 294 ----YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYL 369 (374)
T ss_dssp ----THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 57789999999999987654 17899999999999999999999999998
Q ss_pred ccc
Q 012138 443 LDL 445 (470)
Q Consensus 443 ~~~ 445 (470)
+.
T Consensus 370 -~~ 371 (374)
T 3uwc_A 370 -EK 371 (374)
T ss_dssp -TT
T ss_pred -hh
Confidence 53
No 174
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.93 E-value=2.5e-25 Score=221.68 Aligned_cols=306 Identities=13% Similarity=0.154 Sum_probs=207.4
Q ss_pred CHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEE
Q 012138 93 HPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~ 171 (470)
++++.+++.+.+....+. ...+...++++.++++++.+++++++||++|++.+++.+ .. +|+ .|++
T Consensus 35 ~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~---------~gd-~vl~ 101 (391)
T 3dr4_A 35 DGNERDYVLECMDTTWIS---SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIG---------PGD-EVIV 101 (391)
T ss_dssp CSSHHHHHHHHHHHTCCS---SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCC---------TTC-EEEE
T ss_pred CHHHHHHHHHHHHcCCcc---CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC---------CcC-EEEE
Confidence 377888888887764322 134567899999999999999999999999999999977 32 344 7888
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++|++........+..... .+..++...+ |+++|++++++ ++++|++ .||+|.+.+ +++|.
T Consensus 102 ~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~---d~~~l~~~~~~---~~~~v~~---~n~tG~~~~----~~~i~ 164 (391)
T 3dr4_A 102 PSLTYIASANSVTYCGATPVL----VDNDPRTFNL---DAAKLEALITP---RTKAIMP---VHLYGQICD----MDPIL 164 (391)
T ss_dssp ESSSCTHHHHHHHHTTCEEEE----ECBCTTTCSB---CGGGSGGGCCT---TEEEECC---BCGGGCCCC----HHHHH
T ss_pred CCCchHHHHHHHHHCCCEEEE----EecCccccCc---CHHHHHHhcCC---CceEEEE---ECCCCChhh----HHHHH
Confidence 999988765444333221111 1111111122 78888888865 7888873 679999887 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEEec-HHHHhhcCcC-------
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPG------- 318 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~~~-~~~~~~~~~~------- 318 (470)
++|++||++||+||+|+ |....+. ..+..+|+.++| |++++| +.|+++.+ +++.+.+...
T Consensus 165 ~l~~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~S~s~~K~l~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~ 237 (391)
T 3dr4_A 165 EVARRHNLLVIEDAAEAVGATYRGK-----KSGSLGDCATFSFFGNAIITTG--EGGMITTNDDDLAAKMRLLRGQGMDP 237 (391)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTE-----ETTSSSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHHBTTCCT
T ss_pred HHHHHcCCEEEEECcccccceECCe-----eecccCCEEEEECCCCCcCCcC--CeEEEEECCHHHHHHHHHHHhcCCCC
Confidence 99999999999999998 3322221 122234666555 889775 67787765 4565544321
Q ss_pred -------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE-----EeccceeEEEEe
Q 012138 319 -------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-----VRGRGLFNAVEF 386 (470)
Q Consensus 319 -------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~-----~~~~g~~~~~~~ 386 (470)
..+..+..+++.++++...++.+ +++.++.+++.+++++.|.+++.. .... ....+.++.+.+
T Consensus 238 ~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~~~~~~~~~~i~~ 312 (391)
T 3dr4_A 238 NRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARLGNR---VTKPHVALTGRHVFWMYTVRL 312 (391)
T ss_dssp TSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGGTTS---EECCCCCTTSCCCCSSEEEEE
T ss_pred CCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCcc---ccCcCCCCCCcceeEEEEEEE
Confidence 11223556777777766655544 346777888888888888776211 1111 012233455555
Q ss_pred ccCCCchhHHHHHHHHHHcCceeccCC------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 387 DKTALPVSAYDICLKMKERGILAKPTH------------------------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
... .+.+..++.+.|.++||.+.++. .+.+|+++...+|+|||++++++|++++
T Consensus 313 ~~~-~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 313 GEG-LSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CSS-CSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred CCc-cchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 431 02367899999999999987653 3579999999999999999999998765
No 175
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.92 E-value=5.9e-25 Score=217.20 Aligned_cols=302 Identities=15% Similarity=0.182 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEc
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~ 173 (470)
|++.+++.+.+....+ +..+...++++.++++++.+++++++||++|++.+++.+.. .+|+ .|++..
T Consensus 16 ~~v~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~--------~~gd-~Vi~~~ 82 (367)
T 3nyt_A 16 DKIDAGIQRVLRHGQY----ILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGV--------GPGD-EVITPG 82 (367)
T ss_dssp HHHHHHHHHHHHHCCC----SSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTC--------CTTC-EEEEES
T ss_pred HHHHHHHHHHHhcCCc----cCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCC--------CCcC-EEEECC
Confidence 4555666666554322 23456789999999999999999999999999999987721 1454 788888
Q ss_pred cCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHH
Q 012138 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 174 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l 253 (470)
++|++........+.... +.+..++...+ |+++|++++++ ++++|+ + +|++|...+ +++|.++
T Consensus 83 ~~~~~~~~~~~~~G~~~~----~~~~~~~~~~~---d~~~l~~~i~~---~~~~v~--~-~~~~G~~~~----~~~i~~l 145 (367)
T 3nyt_A 83 FTYVATAETVALLGAKPV----YVDIDPRTYNL---DPQLLEAAITP---RTKAII--P-VSLYGQCAD----FDAINAI 145 (367)
T ss_dssp SSCTHHHHHHHHTTCEEE----EECBCTTTCSB---CGGGTGGGCCT---TEEEEC--C-BCGGGCCCC----HHHHHHH
T ss_pred CccHHHHHHHHHcCCEEE----EEecCCccCCc---CHHHHHHhcCc---CCcEEE--e-eCCccChhh----HHHHHHH
Confidence 887765444333322111 11111111222 78999988865 788888 3 678998887 9999999
Q ss_pred HHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccC-CCcceeEEEe-cHHHHhhcCcCC-------
Q 012138 254 CSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLA-DKEVMLCIQPGE------- 319 (470)
Q Consensus 254 ~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~g-G~~~ig~v~~-~~~~~~~~~~~~------- 319 (470)
|++||++||+||+|+ |..+.|... +...|++++| |.+++ |. .|+++. ++++.+.++...
T Consensus 146 a~~~~~~li~D~a~~~g~~~~~~~~-----~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~ 218 (367)
T 3nyt_A 146 ASKYGIPVIEDAAQSFGASYKGKRS-----CNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRR 218 (367)
T ss_dssp HHHTTCCBEEECTTTTTCEETTEET-----TSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEET
T ss_pred HHHcCCEEEEECccccCCeECCeec-----cCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcC
Confidence 999999999999998 443333322 2222777665 99987 73 677776 577766554321
Q ss_pred -----ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchh
Q 012138 320 -----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 394 (470)
Q Consensus 320 -----~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 394 (470)
.+.++..+++.++++.+.++.+ +++.++.+++.+++.+.|.++....|...........++.+.+. +
T Consensus 219 ~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 290 (367)
T 3nyt_A 219 YHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD------N 290 (367)
T ss_dssp TEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS------S
T ss_pred ceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC------C
Confidence 1356778999999988888765 34667788888889998888643222100001111222333222 4
Q ss_pred HHHHHHHHHHcCceeccCC------------------------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 395 AYDICLKMKERGILAKPTH------------------------DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 395 ~~~~~~~l~~~Gv~~~~~~------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
..++.+.|.++||.+.+.. ...+|+.....+|++|++++++.|++.
T Consensus 291 ~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 291 RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999876432 246899988899999999999998765
No 176
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.92 E-value=4.3e-24 Score=212.53 Aligned_cols=308 Identities=14% Similarity=0.122 Sum_probs=207.9
Q ss_pred CHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEE
Q 012138 93 HPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~ 171 (470)
.|++.+++.++++...+ ..+..+...++++.++++++.+..++++||++|++.+++.+ .. +|+ .|++
T Consensus 16 ~~~~~~a~~~~l~~~~~--~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~---------~gd-~Vi~ 83 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQW--WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVG---------PGT-EVIV 83 (388)
T ss_dssp CHHHHHHHHHHHHTSCC--BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCC---------TTC-EEEE
T ss_pred CHHHHHHHHHHHHcCCe--eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC---------CcC-EEEE
Confidence 38999999999876322 12234667899999999998877777778899999999876 32 454 7888
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++|++........+... . +.+..++...+ |+++|++++++ ++++|+ | +||+|.+.+ +++|.
T Consensus 84 ~~~~~~~~~~~~~~~g~~~-~---~v~~~~~~~~~---d~~~l~~~i~~---~~~~v~--~-~n~tG~~~~----l~~i~ 146 (388)
T 1b9h_A 84 PAFTFISSSQAAQRLGAVT-V---PVDVDAATYNL---DPEAVAAAVTP---RTKVIM--P-VHMAGLMAD----MDALA 146 (388)
T ss_dssp ESSSCTHHHHHHHHTTCEE-E---EECBCTTTCCB---CHHHHHHHCCT---TEEEEC--C-BCGGGCCCC----HHHHH
T ss_pred CCCccHHHHHHHHHcCCEE-E---EEecCCCcCCC---CHHHHHHhcCc---CceEEE--E-eCCccCcCC----HHHHH
Confidence 9999877654333222211 1 11111111122 89999999865 788877 4 889999987 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHH-H--HhhcCcCC------
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE-V--MLCIQPGE------ 319 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~-~--~~~~~~~~------ 319 (470)
++|++||++||+||+|+ |..+.|.. ...++ ..++.+|| |+++|| ++|+++++++ + ++.+....
T Consensus 147 ~la~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (388)
T 1b9h_A 147 KISADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTAG--EGGAVVFPDGETEKYETAFLRHSCGRPR 221 (388)
T ss_dssp HHHHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCSS--SCEEEEECTTCHHHHHHHHHHTBTTCCT
T ss_pred HHHHHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccCC--CeEEEEECCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999998 44343332 22233 23566777 666664 7899998775 5 45442110
Q ss_pred ---------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-------ccceeEE
Q 012138 320 ---------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-------GRGLFNA 383 (470)
Q Consensus 320 ---------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-------~~g~~~~ 383 (470)
.+.++..++++++++...++.++ +..++.+++++++.+.|+++ | .+.... ..+.+++
T Consensus 222 ~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~~~~~~~~ 294 (388)
T 1b9h_A 222 DDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI----D-GVVPQGGDVRADRNSHYMAM 294 (388)
T ss_dssp TCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS----T-TCEECCCCTTCCBCCCSEEE
T ss_pred cCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----C-CccccCCCcCCCccceEEEE
Confidence 12233467777776665555443 35666777788888777653 2 232221 2356667
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCCC---------------------------------CEEEEecCCCC-CHHH
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTHD---------------------------------TIVRLTPPLSI-SSNE 429 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------------------~~iR~~~~~~~-t~e~ 429 (470)
+.++... +.+..++.+.|.++||.+.++.. +.+||++...+ |++|
T Consensus 295 ~~~~~~~-~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~ed 373 (388)
T 1b9h_A 295 FRIPGLT-EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPE 373 (388)
T ss_dssp EECTTCC-HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHH
T ss_pred EEeCCcC-cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHH
Confidence 7664311 12577899999999999865421 25899988888 9999
Q ss_pred HHHHHHHHHHHHh
Q 012138 430 LQEGSKALHDVLE 442 (470)
Q Consensus 430 i~~~~~~l~~~l~ 442 (470)
|+++++.|+++++
T Consensus 374 i~~~~~~l~~~~~ 386 (388)
T 1b9h_A 374 LHATAEIIADAVA 386 (388)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
No 177
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.92 E-value=5.1e-24 Score=216.06 Aligned_cols=324 Identities=15% Similarity=0.138 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHH-HccccC--CCCCCC-----cHHHHH-HHHhhhhCCCeEEe-cCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAE-KLTLSS--RAFYND-----KFPVFA-ERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~-~~~~~~--~~~~~~-----~~~~l~-~~l~~~~~~~~v~~-~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.+|+|++++.+++. .+...+ ..++.. ..++++ +++++++|.+.+.+ ++||++|++.+++++++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~------- 129 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMS------- 129 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcC-------
Confidence 48999999988875 332211 111111 225566 88999999888777 99999999999998765
Q ss_pred CCCCCcEEEEEccCccccccchh--cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAAI--SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 239 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~ 239 (470)
+|+ .|++..++|++...... ...+. .+...+.+..++... .|+++|++++++. ++++|+++..+||++.
T Consensus 130 --~Gd-~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~---~d~~~l~~~i~~~--~~~~i~~~~~~~~~~~ 200 (447)
T 3h7f_A 130 --PGE-RLLGLDLANGGHLTHGMRLNFSGK-LYENGFYGVDPATHL---IDMDAVRATALEF--RPKVIIAGWSAYPRVL 200 (447)
T ss_dssp --TTC-EEEEECGGGTCCGGGTCTTSHHHH-SSEEEEECCCTTTCS---CCHHHHHHHHHHH--CCSEEEEECSSCCSCC
T ss_pred --CCC-EEEecCcccccccchhhhhhhcCC-eeEEEEcCcCcccCC---cCHHHHHHHHHhc--CCeEEEEcCCCCCCcc
Confidence 465 78888888766221111 11110 011000111111112 2899999999754 5667777443666554
Q ss_pred ccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcC
Q 012138 240 IIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQ 316 (470)
Q Consensus 240 ~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~ 316 (470)
+ +++|+++|++||++||+||+|. |+.+.|...... . ..|++ +++|+++ |. +.|++++++++++.+.
T Consensus 201 --~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~--~~di~~~s~sK~l~-G~-~gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 201 --D----FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-P--HADVVSTTVHKTLG-GG-RSGLIVGKQQYAKAIN 269 (447)
T ss_dssp --C----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-T--TCSEEEEESSGGGC-CC-SCEEEEECGGGHHHHH
T ss_pred --C----HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-C--CCcEEEecCCcCCC-CC-CeEEEEECHHHHHHHh
Confidence 4 9999999999999999999985 554444332111 1 12554 7789986 56 8899999998888776
Q ss_pred cCCccCCCC-CCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEEEEeccCC
Q 012138 317 PGEHGSTFG-GNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKTA 390 (470)
Q Consensus 317 ~~~~~~t~~-~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~~~~~~~~ 390 (470)
......+++ .+...++++.+++..+.+ +.+.+++.++++++.+.|++.....+ .+..+. ..+.++++.+....
T Consensus 270 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 348 (447)
T 3h7f_A 270 SAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKA-GVSVVSGGTDVHLVLVDLRDSP 348 (447)
T ss_dssp HHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHT-TCEEGGGSCSSSEEEEECTTSS
T ss_pred hhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCC-CeEEecCCCCCCEEEEEcCCCC
Confidence 543334444 334445555556655433 34777788888888888876511111 122222 24455666554322
Q ss_pred CchhHHHHHHHHHHcCceec----cC------CCCEEEEecCCC----CCHHHHHHHHHHHHHHHhcccC
Q 012138 391 LPVSAYDICLKMKERGILAK----PT------HDTIVRLTPPLS----ISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 391 ~~~~~~~~~~~l~~~Gv~~~----~~------~~~~iR~~~~~~----~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+...+.+.|.++||++. |. .++.+|++++.. ++++|+++++++|.+++. +..
T Consensus 349 --~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~-~~~ 415 (447)
T 3h7f_A 349 --LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA-TGS 415 (447)
T ss_dssp --CCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH-SGG
T ss_pred --CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh-ccC
Confidence 256667777777799987 33 357799987765 789999999999999998 653
No 178
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.92 E-value=8.3e-24 Score=205.80 Aligned_cols=277 Identities=12% Similarity=0.051 Sum_probs=192.2
Q ss_pred HHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc---ccCCcccccCCC
Q 012138 121 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS---MSCDNEAIRGFG 197 (470)
Q Consensus 121 ~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~ 197 (470)
++++.++++++.+..++++||++|++.+++.+.. +|+ .|++..++|++....... ..+
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~---------~g~-~v~~~~~~~~~~~~~~~~~~~~~g--------- 62 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLK---------AGD-HLISDDCLYGCTHALFEHQLRKFG--------- 62 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESCCCHHHHHHHHTHHHHTT---------
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC---------CCC-EEEEcCCCcchHHHHHHHHHHhcC---------
Confidence 5788888888888888888899999999987643 454 788889998775433211 111
Q ss_pred CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh-cCcEEEEeccccCCcccCCc
Q 012138 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-YNILMIADEIQSGLARSGRM 276 (470)
Q Consensus 198 ~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~-~gillI~Dev~~g~g~~G~~ 276 (470)
..+..++..|+++|++++++ ++++|++++++||+|.+.| +++|.++|++ ||+++|+||+|+.+. ....
T Consensus 63 ---~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~-~~~~ 131 (331)
T 1pff_A 63 ---VEVDFIDMAVPGNIEKHLKP---NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPI-LTNP 131 (331)
T ss_dssp ---CEEEEECTTSTTHHHHTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHH-HCCG
T ss_pred ---CEEEEeCCCCHHHHHHhhcC---CCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccc-cCCh
Confidence 11345556689999988875 7899999888999999997 9999999999 999999999998321 1111
Q ss_pred cccccCCCCcceeeccccccC-CCcc-eeEEEecH-HHHhhcCcCCcc-CCCCCCHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012138 277 LASDWEEVRPDMVILGKALGG-GVIP-VSAVLADK-EVMLCIQPGEHG-STFGGNPLASAVAIASLDVIRDEKLAERSAH 352 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~sK~l~g-G~~~-ig~v~~~~-~~~~~~~~~~~~-~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~ 352 (470)
. .++.+..+.+++|.+++ |. | +|++++++ ++++.+.+.... .+.+.+++.++++.++++.+.. ..++...
T Consensus 132 --~-~~~~d~~~~s~~K~~~~~~~-r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ 205 (331)
T 1pff_A 132 --L-DLGVDIVVHSATKYINGHTD-VVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKRAAE 205 (331)
T ss_dssp --G-GGTCSEEEEETTTTTSSSSS-CCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred --h-hcCCcEEEEECccccCCCCC-ceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHH--HHHHHHH
Confidence 1 23443344589999984 55 7 78999998 898888766555 5667888888877777765432 2223333
Q ss_pred HHHHHHHHHHHHHh----------hCCCceE----EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC------
Q 012138 353 LGEELRQHLFKIQQ----------QFPNYVK----EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT------ 412 (470)
Q Consensus 353 ~~~~l~~~L~~l~~----------~~p~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------ 412 (470)
+...+.+.|++... ..| .+. ..++.|.++.+.+. +..++.+.|.++||++.+.
T Consensus 206 ~~~~~~~~l~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gI~~~~~s~g~~~ 278 (331)
T 1pff_A 206 NAQKVAEFLHEHKAVKKVYYPGLPDHP-GHEIAKKQMKMFGSMIAFDVD------GLEKAKKVLDNCHVVSLAVSLGGPE 278 (331)
T ss_dssp HHHHHHHHHHHCTTCCCEECTTSTTST-THHHHHHHCSSCCSEEEEECS------SHHHHHHHHHTCSSSEECSSCCSSS
T ss_pred HHHHHHHHHHcCCCeeEEECCCCCCCc-cHHHHHhhCCCCceEEEEEEC------CHHHHHHHHHhCCCceeccCCCCcc
Confidence 33334344433210 001 000 01245778888664 3456788888889965322
Q ss_pred ------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 413 ------------------------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 413 ------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.++++|++++..+++++++++++.|+++
T Consensus 279 sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 279 SLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 1579999999999999999999988764
No 179
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.92 E-value=5.4e-25 Score=216.47 Aligned_cols=314 Identities=13% Similarity=0.086 Sum_probs=198.0
Q ss_pred CCHHHHHHHHHHHHHccc--cCCCC-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTL--SSRAF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.||.+.+++.++++.+.. ....| ..+...+++++++++++.+..++++||++|+..+++++.. ++++.
T Consensus 19 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~---------~gd~~ 89 (357)
T 3lws_A 19 HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSD---------ETDNR 89 (357)
T ss_dssp SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH---------HHTCC
T ss_pred CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhh---------cCCCc
Confidence 567788888777765321 11112 2366889999999999988888889999999999998766 34532
Q ss_pred EEEEccCccccccc---hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCC-ccccCCh
Q 012138 169 IVSCCGCFHGRTLA---AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEA-GVIIPPD 244 (470)
Q Consensus 169 ii~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~-G~~~~~~ 244 (470)
+|+.++.+|..... .....+..... .+ .+...+ |+++|+++. ++++|++++++||+ |.++ +.
T Consensus 90 ~vi~~~~~~~~~~~~~~~~~~~g~~~~~---v~--~~~~~~---d~~~l~~~~-----~~~~v~~~~p~np~~G~~~-~~ 155 (357)
T 3lws_A 90 TVAYHPLCHLEIHEQDGLKELHPIETIL---VG--AADRLM---TLDEIKALP-----DIACLLLELPQREIGGVAP-AF 155 (357)
T ss_dssp EEEECTTCHHHHSSTTHHHHHSSCEEEE---CS--CTTSCC---CHHHHHTCC-----SCSEEEEESSBGGGTSBCC-CH
T ss_pred EEEecccceeeeeccchhhhccCcEEEE---ec--CCCCCc---CHHHHhcCc-----CcceEEEEcccccCCceeC-CH
Confidence 34444444543322 11111111110 01 000112 788888761 37788887779997 8888 89
Q ss_pred hhHHHHHHHHHhcCcEEEEecccc-C-CcccCCcc-ccccCCCCcc--eeeccccccCCCcceeEEEecHHHHhhcCcCC
Q 012138 245 GYLKAVRDLCSKYNILMIADEIQS-G-LARSGRML-ASDWEEVRPD--MVILGKALGGGVIPVSAVLADKEVMLCIQPGE 319 (470)
Q Consensus 245 ~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~-~~~~~~~~pd--i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~ 319 (470)
+++++|.++|++||++||+||+|. + .+..|... .+. . ..| +.++||++++.. . |++++++++++.+....
T Consensus 156 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~--~~d~~~~s~sK~~~~~~-g-g~~~~~~~~~~~~~~~~ 230 (357)
T 3lws_A 156 SELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-G--LFDSIYISFYKGLGGIA-G-AILAGPAAFCQTARIWK 230 (357)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-T--TSSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-h--cCCEEEEeccccCCCCc-e-EEEEcCHHHHHHHHHHH
Confidence 999999999999999999999986 1 11112111 011 1 124 449999996543 3 88999999888775321
Q ss_pred --ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE--EeccceeEEEEeccCCCchhH
Q 012138 320 --HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE--VRGRGLFNAVEFDKTALPVSA 395 (470)
Q Consensus 320 --~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~--~~~~g~~~~~~~~~~~~~~~~ 395 (470)
.+.+.......++++.++|+... +. .++..++++++.+.|+++ | .+.. .++.+.++++.+.... ..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~----~-g~~~~~~~~~~~~~~~~~~~~~-~~~~ 302 (357)
T 3lws_A 231 RRYGGDLISLYPYIVSADYYYELRK-DR-MGQYYEQAKQLAEQFNAL----P-GVHTTPEVPVSNMFHLHFDGQA-ADIS 302 (357)
T ss_dssp HHTTCCCSCCHHHHHHHHHHHHHHT-TC-HHHHHHHHHHHHHHHHTS----T-TEEEESSSCSSSEEEEEEESCH-HHHH
T ss_pred HHhcCCcccchHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhC----C-CCeeccCCCcceEEEEEecCCh-HHHH
Confidence 22222223333444556666432 22 334566677777777653 2 3433 2356677777665421 0136
Q ss_pred HHHHHHHHHcCceeccCC-----CCEEEEecCC---CCCHHHHHHHHHHHHHHH
Q 012138 396 YDICLKMKERGILAKPTH-----DTIVRLTPPL---SISSNELQEGSKALHDVL 441 (470)
Q Consensus 396 ~~~~~~l~~~Gv~~~~~~-----~~~iR~~~~~---~~t~e~i~~~~~~l~~~l 441 (470)
.++.+.|.++||++.++. ..++|++... ..+++++++++++|.+++
T Consensus 303 ~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 303 PKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 788899999999998763 2388998653 368999999999998875
No 180
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.92 E-value=2e-24 Score=215.52 Aligned_cols=334 Identities=10% Similarity=0.020 Sum_probs=210.7
Q ss_pred eEEeccCCcccccCCC--CCHHHHHHHHHHH-HHc---cccCCCCCCCcHHHHHHHHhhhhC----CCe--EEecCChhH
Q 012138 76 KYLDFLSAYSAVNQGH--CHPKIMKALQEQA-EKL---TLSSRAFYNDKFPVFAERLTSMFG----YDM--VLPMNTGAE 143 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~-~~~---~~~~~~~~~~~~~~l~~~l~~~~~----~~~--v~~~~sGte 143 (470)
.+|||..|....+.|. .++.|.+++. .+ +.. .+.+..+..++++.+++++....+ .++ ++.|+||++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 4578887753333332 4677777766 43 221 122223344566777777654433 233 689999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC-CCCeeeecCCCHHHHHHHHHhcC
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
|+..+++++..+ .+ +.|++.+|+|.+........+... .. .++ ..+...+ |+++|++.+++.
T Consensus 109 al~~~~~~l~~~--------~~-d~Vlv~~P~y~~~~~~~~~~g~~~-~~---v~~~~~~~~~~---d~~~l~~~l~~~- 171 (405)
T 3k7y_A 109 AIFVLLEFLKML--------NV-ETLYVTNPPYINHVNMIESRGFNL-KY---INFFDYNLIDI---NYDLFLNDLRNI- 171 (405)
T ss_dssp HHHHHHHHHHTT--------TC-CEEEEESSCCHHHHHHHHTTTCEE-EE---ECCEETTTTEE---CHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhc--------CC-CEEEEeCCCCHhHHHHHHHcCCeE-EE---EeccccccCCc---CHHHHHHHHHhC-
Confidence 999999877642 13 589999999976654443332211 10 011 0111233 899999999763
Q ss_pred CCeEEEEEcc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC---ccccccC-CCCcc---eeecccc
Q 012138 223 DQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---MLASDWE-EVRPD---MVILGKA 294 (470)
Q Consensus 223 ~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~---~~~~~~~-~~~pd---i~s~sK~ 294 (470)
.+++++++++ .|||||.++ +.+.+++|.++|++||+++|+||+|.+|.+.+. ......+ ..... +.||||.
T Consensus 172 ~~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 250 (405)
T 3k7y_A 172 PNGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKN 250 (405)
T ss_dssp CSSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTT
T ss_pred CCCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCcc
Confidence 2456777776 489999999 999999999999999999999999998865431 1111110 11122 3499999
Q ss_pred cc-CCCcceeEEEe---cHHHHhhcCcC---CccCCC-CCCHHHHHHHHHHHHHH------hh--hhHHHHHHHHHHHHH
Q 012138 295 LG-GGVIPVSAVLA---DKEVMLCIQPG---EHGSTF-GGNPLASAVAIASLDVI------RD--EKLAERSAHLGEELR 358 (470)
Q Consensus 295 l~-gG~~~ig~v~~---~~~~~~~~~~~---~~~~t~-~~~~~~~aaa~a~l~~~------~~--~~~~~~~~~~~~~l~ 358 (470)
++ +|+ |+||+++ ++++++.+... ....++ +.+.++++++.++|+.- .+ ..++++++++++.+.
T Consensus 251 ~~l~Gl-RiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~ 329 (405)
T 3k7y_A 251 MSLYGE-RAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFF 329 (405)
T ss_dssp SCCTTT-TEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccc-cceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999 9999853 66665544211 112233 35567777666666431 11 234455677777777
Q ss_pred HHHH----HHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHH
Q 012138 359 QHLF----KIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 359 ~~L~----~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+.|+ +++. |..+....++|.|+.| +..+ . +++++|.++||.+.|++ ||++. ..++++|++++
T Consensus 330 ~~L~~~~~~~g~--~~~~~~~~p~gg~f~~-~~l~-----~-~~~~~L~~~gV~v~p~~----Ris~a-~~~~~~i~~~~ 395 (405)
T 3k7y_A 330 NKLETYQKKYNL--NYDWNVYKKQRGLFSF-VPLL-----A-KIAEHLKTHHIYIINNG----RINVS-GITKNNVDYIA 395 (405)
T ss_dssp HHHHHHGGGGTC--CCCGGGGSSCCSSEEE-CGGG-----G-GGTTTTTTTTEECCTTS----EEEGG-GCCTTHHHHHH
T ss_pred HHHHhhhhhcCC--CCCCccccCCceEEEe-cCCC-----H-HHHHHHHHCCEeecCCC----eEEEe-ccCHHHHHHHH
Confidence 7776 5421 1112334567777777 3321 1 44567766699999874 99843 35788999999
Q ss_pred HHHHHHHhcc
Q 012138 435 KALHDVLELD 444 (470)
Q Consensus 435 ~~l~~~l~~~ 444 (470)
++|.++++ +
T Consensus 396 ~~i~~~~~-~ 404 (405)
T 3k7y_A 396 DKICLSLS-Q 404 (405)
T ss_dssp HHHHHHHH-C
T ss_pred HHHHHHHh-h
Confidence 99999987 5
No 181
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.92 E-value=8.6e-24 Score=212.99 Aligned_cols=329 Identities=17% Similarity=0.201 Sum_probs=205.4
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~ 171 (470)
.++++.+++.+.++...+.. ..+...++++.++++++.+++++++||++|++.+++.+. +| +.|++
T Consensus 30 ~p~~~~~a~~~~~~~~~y~~---~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~----------~g-d~Vlv 95 (424)
T 2po3_A 30 DRARLYERLDRALDSQWLSN---GGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG----------LT-GEVIM 95 (424)
T ss_dssp CHHHHHHHHHHHHHHTCCSS---SCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT----------CC-SEEEE
T ss_pred ChHHHHHHHHHHHhcCCccc---CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC----------CC-CEEEE
Confidence 46789999988887532111 134578899999999999999999999999999998763 34 48899
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++|++...... ..+..... .+..++...+ |+++|++++++ ++++|++. +|+|.+.+ +++|.
T Consensus 96 ~~~~~~~~~~~~~-~~G~~~~~---v~~~~~~~~~---d~~~l~~~i~~---~~~~v~~~---~~tG~~~~----l~~i~ 158 (424)
T 2po3_A 96 PSMTFAATPHALR-WIGLTPVF---ADIDPDTGNL---DPDQVAAAVTP---RTSAVVGV---HLWGRPCA----ADQLR 158 (424)
T ss_dssp ESSSCTHHHHHHH-HTTCEEEE---ECBCTTTSSB---CHHHHGGGCCT---TEEEEEEE---CGGGCCCC----HHHHH
T ss_pred CCCccHHHHHHHH-HcCCEEEE---EecCCCcCCc---CHHHHHHhhCc---CCcEEEEE---CCCCCcCC----HHHHH
Confidence 9999877654332 22211111 1111111112 78999888865 78888864 37888776 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--ecc--ccccCCCcceeEEEec-HHHHhhcCcCCc-----
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEH----- 320 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~s--K~l~gG~~~ig~v~~~-~~~~~~~~~~~~----- 320 (470)
++|++||++||+||+|+ |+.+.|..+ +..+|++ +|+ |.++| . ++|+++++ +++++.+.....
T Consensus 159 ~la~~~~~~li~Dea~~~g~~~~~~~~-----~~~~di~~~S~sk~K~l~~-~-~~G~~v~~~~~l~~~l~~~~~~~~~~ 231 (424)
T 2po3_A 159 KVADEHGLRLYFDAAHALGCAVDGRPA-----GSLGDAEVFSFHATKAVNA-F-EGGAVVTDDADLAARIRALHNFGFDL 231 (424)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTEET-----TSSSSEEEEECCTTSSSCC-S-SCEEEEESCHHHHHHHHHHHBTTTTC
T ss_pred HHHHHcCCEEEEECccccCCeECCeec-----ccccCEEEEeCCCCCCccC-C-CCeEEEeCCHHHHHHHHHHHhcCccc
Confidence 99999999999999999 776555322 1123555 555 77776 4 99999998 788776543211
Q ss_pred -------cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-ccc-----eeEEEEec
Q 012138 321 -------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRG-----LFNAVEFD 387 (470)
Q Consensus 321 -------~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~g-----~~~~~~~~ 387 (470)
+.++..++++++++...++.+ +.+.++.+++.+++.+.|.++ | .+.... +.| .++.+.+.
T Consensus 232 ~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~~~~~~~~~~~~~i~~~ 304 (424)
T 2po3_A 232 PGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLADL----P-GVLVADHDRHGLNNHQYVIVEID 304 (424)
T ss_dssp TTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCSC----T-TEEECCGGGGSCCCCCCEEEEEC
T ss_pred cccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----C-CccccCCCCCCccccEEEEEEEC
Confidence 112234566766666555443 235566666666666666442 2 233322 222 33434443
Q ss_pred cCCCchhHHHHHHHHHHcCceeccCCC-------------------------CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 388 KTALPVSAYDICLKMKERGILAKPTHD-------------------------TIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
....+.+..++.+.|.++||.+.+... ..+|+.+...+|++|+++++++|.++++
T Consensus 305 ~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~ 384 (424)
T 2po3_A 305 EATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT 384 (424)
T ss_dssp HHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 200002577899999999999876311 1277777789999999999999999887
Q ss_pred cccCCCCC------CCCCCCCCCCCccccc
Q 012138 443 LDLPKMRK------PKPADAPATPCHRCGR 466 (470)
Q Consensus 443 ~~~~~~~~------~~~~~~~~~~~~~~~~ 466 (470)
+..+..+ ..+..+|.+..-.||+
T Consensus 385 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (424)
T 2po3_A 385 -RGRELTARHRDTAPAPLAAPQTSTPTIGR 413 (424)
T ss_dssp -HHHHHHHHHHC------------------
T ss_pred -hhHHHhhhhccCCCCcccCCCCCCCcccc
Confidence 6543221 1123336555555654
No 182
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.92 E-value=1.2e-23 Score=211.23 Aligned_cols=312 Identities=14% Similarity=0.143 Sum_probs=194.6
Q ss_pred CCHHHHHHHHHHHHH-cccc--CCCC-----CCCcHHH-HHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAEK-LTLS--SRAF-----YNDKFPV-FAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~-~~~~--~~~~-----~~~~~~~-l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.||+|.+++.+++.. +... ...+ ..+...+ .+++++++++.+.. +++++|++|++.+++.+..
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~------- 114 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQ------- 114 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcC-------
Confidence 689999999998843 2111 1111 1122233 33678888887654 4467889999999987754
Q ss_pred CCCCCcEEEEEccCccccccchh--cccCCcccccCCCCCCCCeeeec-----CCCHHHHHHHHHhcCCCeEEEEEcccc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAAI--SMSCDNEAIRGFGPLLPGHLKVD-----FGDITALEKIFKESGDQIAGFLFEPIQ 234 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~Le~~l~~~~~~~~~vi~epi~ 234 (470)
+|+ .|++..++|++...... ...+.... ...++ ..|+++|+++++++ ++++|++++.+
T Consensus 115 --~gd-~v~~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~ 179 (420)
T 3gbx_A 115 --PGD-TVLGMNLAQGGHLTHGSPVNFSGKLYN----------IVPYGIDESGKIDYDEMAKLAKEH--KPKMIIGGFSA 179 (420)
T ss_dssp --TTC-EEEEEEEC------------CHHHHSE----------EEEEEECTTCSCCHHHHHHHHHHH--CCSEEEECCTT
T ss_pred --CCC-EEEecchhhcceeccchhhhhccccee----------EEeccCCccCCcCHHHHHHHHHhc--CCeEEEEecCc
Confidence 455 67777777544221111 11110000 01111 13899999999874 57888875535
Q ss_pred CCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceee--ccccccCCCcceeEEEecH--
Q 012138 235 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADK-- 309 (470)
Q Consensus 235 n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ig~v~~~~-- 309 (470)
++ ...+ +++|.++|++||++||+||+|+ |+.+.|..... .. .+|+++ +||+++ |. +.|++++++
T Consensus 180 ~~--~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~-~gg~~~~~~~~ 248 (420)
T 3gbx_A 180 YS--GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GP-RGGLILAKGGD 248 (420)
T ss_dssp CC--SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SC-SCEEEEESSCC
T ss_pred cC--CccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CC-CceEEEEcCCc
Confidence 54 4565 9999999999999999999986 55444433211 11 267775 779997 43 568899887
Q ss_pred -HHHhhcCcCCccCCCC-CCHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeE
Q 012138 310 -EVMLCIQPGEHGSTFG-GNPLASAVAIASLDVIR-D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFN 382 (470)
Q Consensus 310 -~~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~-~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~ 382 (470)
++.+.+......++++ .+...++++.+++..+. + +++.++++++++++.+.|.+. .+..+. ..+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~~~~~~~~~ 322 (420)
T 3gbx_A 249 EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR------GYKVVSGGTENHLF 322 (420)
T ss_dssp HHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT------TCEEGGGSCSSSEE
T ss_pred HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc------CCeeccCCCCCeEE
Confidence 7777765443333333 33444444444554432 2 456778888888888888773 233222 356677
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceecc-------C---CCCEEEEecCCC----CCHHHHHHHHHHHHHHHhccc
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKP-------T---HDTIVRLTPPLS----ISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~---~~~~iR~~~~~~----~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++.+.... .+...+.+.|.++||++.+ + ..+.+||+++.. .+++++++++++|+++++ +.
T Consensus 323 ~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~-~~ 396 (420)
T 3gbx_A 323 LLDLVDKN--LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD-NI 396 (420)
T ss_dssp EEECGGGT--CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred EEEcCCCC--CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHh-Cc
Confidence 77664322 2567788889889999876 2 245699998755 568999999999999998 64
No 183
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.92 E-value=1.4e-25 Score=227.57 Aligned_cols=310 Identities=12% Similarity=0.102 Sum_probs=200.8
Q ss_pred cCCCCCHHHHHHHHHH----HHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCC
Q 012138 88 NQGHCHPKIMKALQEQ----AEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFS 163 (470)
Q Consensus 88 ~lG~~~p~v~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~ 163 (470)
+.+..+|.|.+++... .+...+.+..+..+.+.++++++++++|.++++++++|++|+..+++ +..
T Consensus 100 ~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~~~--------- 169 (464)
T 1ibj_A 100 PFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LIK--------- 169 (464)
T ss_dssp TTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-TSC---------
T ss_pred CCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-HhC---------
Confidence 4555666676665432 11111212123345688999999999999999999999999987775 221
Q ss_pred CCCcEEEEEccCccccccch---hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 164 IDEAIIVSCCGCFHGRTLAA---ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
+|+ .|++..+.|++..... ....+ ..+..++.+|+++|++++++ ++++|++++++||+|.+
T Consensus 170 ~Gd-~Vi~~~~~y~~~~~~~~~~~~~~G------------~~v~~v~~~d~~~l~~~i~~---~tk~v~l~~p~NptG~v 233 (464)
T 1ibj_A 170 NGE-EIVAGDDVYGGSDRLLSQVVPRSG------------VVVKRVNTTKLDEVAAAIGP---QTKLVWLESPTNPRQQI 233 (464)
T ss_dssp TTC-EEEEESSCCHHHHHHHHHTSGGGT------------CEEEEECTTSHHHHHHHCCS---SEEEEEECSSCTTTCCC
T ss_pred CCC-EEEEECCCchhHHHHHHHHHHHcC------------CEEEEeCCCCHHHHHHHhcc---CceEEEEeCCCCCCCEe
Confidence 455 7888999987653211 11111 12356677799999999875 79999999999999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCCccee--eccccccC--CCcceeEEEec-HHHHhh
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRPDMV--ILGKALGG--GVIPVSAVLAD-KEVMLC 314 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~~-~~~~~~ 314 (470)
++ +++|.++|++||+++|+||+|+. |..+ ..+ ++ .|++ +++|.++| |+ ++|+++++ +++++.
T Consensus 234 ~~----l~~i~~la~~~gi~livDea~~~----g~~~~~~~-~~--~div~~S~sK~~~g~~Gl-~~G~l~~~~~~l~~~ 301 (464)
T 1ibj_A 234 SD----IRKISEMAHAQGALVLVDNSIMS----PVLSRPLE-LG--ADIVMHSATKFIAGHSDV-MAGVLAVKGEKLAKE 301 (464)
T ss_dssp CC----HHHHHHHHHTTTCEEEEECTTTC----TTTCCGGG-TT--CSEEEEETTTTTTCSSCC-CCEEEEECSHHHHHH
T ss_pred ec----HHHHHHHHHHcCCEEEEECCCcc----cccCChhh-cC--CEEEEECCcccccCCCCC-cEEEEEEChHHHHHH
Confidence 97 99999999999999999999973 2111 112 33 4655 78999985 87 99999998 478777
Q ss_pred cCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHH-------HHHHhhCCCceE----EEecccee
Q 012138 315 IQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHL-------FKIQQQFPNYVK----EVRGRGLF 381 (470)
Q Consensus 315 ~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L-------~~l~~~~p~~~~----~~~~~g~~ 381 (470)
+........++.+++.++++.++++.+.. +...+++..+.+++.+.- ..+ ..+| .+. ..++.|.+
T Consensus 302 l~~~~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L-~~~p-~~~~~~~~~~g~g~~ 379 (464)
T 1ibj_A 302 VYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGL-PDHP-GHHLHFSQAKGAGSV 379 (464)
T ss_dssp HHHHHHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTS-TTST-THHHHTTTCSCCCSE
T ss_pred HHHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCC-CCCc-chHHHhccCCCCceE
Confidence 75433223345678888887777653321 112222333332222110 000 0111 111 11235778
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceeccCC---------------------------CCEEEEecCCCCCHHHHHHHH
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAKPTH---------------------------DTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------------------------~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+++.+.. . .....+.+.|...||.+..+. ++++||+++. |++++++
T Consensus 380 ~~~~l~~-~--~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li 452 (464)
T 1ibj_A 380 FSFITGS-V--ALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLI 452 (464)
T ss_dssp EEEECSC-H--HHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHH
T ss_pred EEEEECC-H--HHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHH
Confidence 8887732 1 134568888776777765442 4689999775 8999999
Q ss_pred HHHHHHHhccc
Q 012138 435 KALHDVLELDL 445 (470)
Q Consensus 435 ~~l~~~l~~~~ 445 (470)
++|+++++ ++
T Consensus 453 ~~L~~al~-~~ 462 (464)
T 1ibj_A 453 SDLDIAFK-TF 462 (464)
T ss_dssp HHHHHHHH-SC
T ss_pred HHHHHHHh-hc
Confidence 99999998 64
No 184
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.92 E-value=5.4e-23 Score=210.02 Aligned_cols=315 Identities=17% Similarity=0.173 Sum_probs=213.0
Q ss_pred CCCCCHHHHHHHHHHHHHccccCCCCC--------CCcHHHHHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhc
Q 012138 89 QGHCHPKIMKALQEQAEKLTLSSRAFY--------NDKFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVK 159 (470)
Q Consensus 89 lG~~~p~v~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~ 159 (470)
.+|.+|++.+++.+.. ..+ ..+. .+...++++++++++|.+.. ++++||++|+..++++++.+. ..
T Consensus 75 ~~~~~p~v~~~~~~~~---~~~-~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~-~~ 149 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLF---ADL-HPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYH-ED 149 (474)
T ss_dssp CCCCCCHHHHHHHHTT---SSC-CTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHH-HH
T ss_pred cccCCHHHHHHHHHHH---Hhc-CCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHH-Hh
Confidence 3467788888887652 211 1121 13467889999999998764 577999999999888876531 11
Q ss_pred ccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEcccc
Q 012138 160 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQ 234 (470)
Q Consensus 160 ~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~ 234 (470)
+|..+++..|++..+. |+....+....+.. ++.++.+ |+++|++++++ ++++|++++ .
T Consensus 150 ~Gd~~~r~~Vlv~~~~-h~~~~~~~~~~G~~------------vv~v~~~~~~~~d~~~L~~~i~~---~t~~v~~~~-p 212 (474)
T 1wyu_B 150 RGEGRTRRVVLVPDSA-HGSNPATASMAGYQ------------VREIPSGPEGEVDLEALKRELGP---HVAALMLTN-P 212 (474)
T ss_dssp TTCTTTCCEEEEETTS-CTHHHHHHHHTTCE------------EEEECBCTTSSBCHHHHHHHCST---TEEEEEECS-S
T ss_pred cCCccCCCEEEEeCCc-ChhhHHHHHHCCCE------------EEEecCCCCCCcCHHHHHHhhCC---CceEEEEEC-C
Confidence 1110123467777755 67666555444322 1223322 89999999975 789999888 4
Q ss_pred CCCccc-cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeec--ccccc-----CCCcceeEEE
Q 012138 235 GEAGVI-IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL--GKALG-----GGVIPVSAVL 306 (470)
Q Consensus 235 n~~G~~-~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~--sK~l~-----gG~~~ig~v~ 306 (470)
|++|.+ .+ +++|.++|++||+++|+||+|..+. .|.. ....++ +|++++ +|+++ ||+ ++|+++
T Consensus 213 n~~G~~~~~----l~~i~~l~~~~g~~li~Dea~~~~~-~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~-~~G~~~ 283 (474)
T 1wyu_B 213 NTLGLFERR----ILEISRLCKEAGVQLYYDGANLNAI-MGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGP-GSGPVG 283 (474)
T ss_dssp CTTSCCCTT----HHHHHHHHHHHTCEEEEEGGGGGGT-TTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCC-CCCCEE
T ss_pred CCCcccCCC----HHHHHHHHHHcCCEEEEeCchhhhh-ccCC-CcccCC--CcEEEEeCccccccCCCCCCC-CeEEEE
Confidence 689988 45 9999999999999999999997321 2211 112223 577755 79886 356 899999
Q ss_pred ecHHHHhhcCcC-------------------CccCCCCCCHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHH
Q 012138 307 ADKEVMLCIQPG-------------------EHGSTFGGNPLASAVAIASLDVIRDEKL---AERSAHLGEELRQHLFKI 364 (470)
Q Consensus 307 ~~~~~~~~~~~~-------------------~~~~t~~~~~~~~aaa~a~l~~~~~~~~---~~~~~~~~~~l~~~L~~l 364 (470)
+++++++.+... ....++++++++++++.+.++.+..+.+ .++..++++++.+.|+++
T Consensus 284 ~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~ 363 (474)
T 1wyu_B 284 VKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK 363 (474)
T ss_dssp ECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999988877510 0112345788888888888876544434 777888888898888875
Q ss_pred HhhCCCceEEEecccee--EEEEeccCCCchhHHHHHHHHHHcCceeccC-----CCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 365 QQQFPNYVKEVRGRGLF--NAVEFDKTALPVSAYDICLKMKERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 365 ~~~~p~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+.. . ..+.+.+ +++.+... .+..+++++|.++||.+... ..+++||+++..+|++++++++++|
T Consensus 364 g~~---~---~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L 434 (474)
T 1wyu_B 364 GYR---V---PYDGPSMHEFVAQPPEG---FRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAM 434 (474)
T ss_dssp TCB---C---SSCSSCCSCEEEBCSTT---CCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHH
T ss_pred CcE---e---cCCCCcceEEEEEcCCC---CCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHH
Confidence 211 1 1122222 33433212 36788999999999986311 2578999998888999999999999
Q ss_pred HHHHhcc
Q 012138 438 HDVLELD 444 (470)
Q Consensus 438 ~~~l~~~ 444 (470)
+++++ +
T Consensus 435 ~~~~~-~ 440 (474)
T 1wyu_B 435 GALLK-K 440 (474)
T ss_dssp HHHHT-S
T ss_pred HHHHH-h
Confidence 99998 6
No 185
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.92 E-value=1.9e-23 Score=207.99 Aligned_cols=282 Identities=12% Similarity=0.118 Sum_probs=191.6
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch---hcccCC
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCD 189 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~ 189 (470)
.+.++...+++++++++++.+.+++++||++|++.+++.+.. +|+ .|++..+.||+..... ....+
T Consensus 55 ~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~~---------~gd-~vl~~~~~y~~~~~~~~~~~~~~g- 123 (389)
T 3acz_A 55 RLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQ---------KGD-HLIAGDTLYGCTVSLFTHWLPRFG- 123 (389)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTCC---------TTC-EEEEESSCCHHHHHHHHHHHHHTT-
T ss_pred CCCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEeCCCchHHHHHHHHHHHHcC-
Confidence 345667889999999999988999999999999999986633 454 7888999987643322 11111
Q ss_pred cccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 190 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
..+..++..|+++|++++++ ++++|++++++||+|.+.| +++|.++|++||+++|+||+|++
T Consensus 124 -----------~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~ 185 (389)
T 3acz_A 124 -----------IEVDLIDTSDVEKVKAAWKP---NTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTS 185 (389)
T ss_dssp -----------CEEEEECTTCHHHHHHTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTC
T ss_pred -----------CEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc
Confidence 11356666799999998875 7899999999999999998 99999999999999999999985
Q ss_pred CcccCCccccccCCCCccee--eccccccC-CCcce-eEEEecH-HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~i-g~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
+. .+..+ +..+|++ +++|.+++ |. |+ |++++++ ++++.+.........+.++..++++.+.++.+.
T Consensus 186 ~~-~~~~~-----~~~~di~~~S~sK~~~~~~~-~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~-- 256 (389)
T 3acz_A 186 PC-FLKPL-----ELGADIALHSVSKYINGHGD-VIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP-- 256 (389)
T ss_dssp TT-TCCGG-----GTTCSEEEEETTTTTTCSSC-CCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--
T ss_pred cc-ccCcc-----ccCCeEEEECChhhccCCCC-ceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH--
Confidence 42 12221 2345776 88999985 55 87 9999998 888877654322233467888877777775432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----hCCC-----ceE----EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc
Q 012138 345 KLAERSAHLGEELRQHLFKIQQ----QFPN-----YVK----EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP 411 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~----~~p~-----~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~ 411 (470)
...++..++...+.+.|++... .+|. .+. ..++.|.++.+.+.. ..++.+.|.+.|+.+..
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~------~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS------FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS------HHHHHHHHTTCSSSEEB
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC------HHHHHHHHHhCCCcEEC
Confidence 2334444455555555555310 0010 000 013457888887742 34455566666876543
Q ss_pred ---C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 412 ---T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 412 ---~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+ .++.+|++++.. +++++++.|.++++
T Consensus 331 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~ 387 (389)
T 3acz_A 331 VSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE 387 (389)
T ss_dssp SCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred cCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 1 147999997654 56666666666665
No 186
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.91 E-value=1.6e-23 Score=207.19 Aligned_cols=309 Identities=15% Similarity=0.184 Sum_probs=205.1
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~ 171 (470)
.+|++.+++.++++....+ +.+...++++.++++++.+++++++||++|++.+++.+..+ . .+|+ .|++
T Consensus 11 ~~~~v~~a~~~~~~~~~~~----~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~--~----~~gd-~Vl~ 79 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQLT----QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEF--S----ADRN-EIIT 79 (375)
T ss_dssp CCHHHHHHHHHHHTSSCCS----SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCC--C----TTSC-EEEE
T ss_pred CCHHHHHHHHHHHHcCccc----CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhccc--C----CCCC-EEEE
Confidence 6799999999998653322 23457889999999999889999999999999999877210 0 1454 8888
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++|++.......... ... +.+..++. .+ |+++|++++++ ++++|++..+ +|.+.| +++|.
T Consensus 80 ~~~~~~~~~~~~~~~g~-~~~---~~~~~~~~-~~---d~~~l~~~i~~---~~~~v~~~~~---tG~~~~----l~~i~ 141 (375)
T 2fnu_A 80 TPISFVATANMLLESGY-TPV---FAGIKNDG-NI---DELALEKLINE---RTKAIVSVDY---AGKSVE----VESVQ 141 (375)
T ss_dssp CSSSCTHHHHHHHHTTC-EEE---ECCBCTTS-SB---CGGGSGGGCCT---TEEEEEEECG---GGCCCC----HHHHH
T ss_pred CCCccHhHHHHHHHCCC-EEE---EeccCCCC-CC---CHHHHHhhcCc---CceEEEEeCC---cCCccC----HHHHH
Confidence 99998776544332221 111 11111111 22 78888888865 7888765442 899987 99999
Q ss_pred HHHHhcCcEEEEeccccCCcc-cCCccccccCCCCcceeecc--ccccCCCcceeEEEe-c-HHHHhhcCcCC-------
Q 012138 252 DLCSKYNILMIADEIQSGLAR-SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLA-D-KEVMLCIQPGE------- 319 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~g~g~-~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~-~-~~~~~~~~~~~------- 319 (470)
++|++||++||+||+|+.+.. .+.. ...++ +.++.+|| |.+++| +|++++ + +++++.+....
T Consensus 142 ~l~~~~~~~li~D~a~~~~~~~~~~~--~~~~~-~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
T 2fnu_A 142 KLCKKHSLSFLSDSSHALGSEYQNKK--VGGFA-LASVFSFHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKK 215 (375)
T ss_dssp HHHHHHTCEEEEECTTCTTCEETTEE--TTSSS-SEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEES
T ss_pred HHHHHcCCEEEEECccccCCeECCee--ccccC-CeEEEeCCCCCCcccc---CceEEEeCCHHHHHHHHHHHhcCCccc
Confidence 999999999999999983211 1111 11122 23455888 998654 466665 3 66766554321
Q ss_pred ---------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec------cceeEEE
Q 012138 320 ---------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG------RGLFNAV 384 (470)
Q Consensus 320 ---------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~------~g~~~~~ 384 (470)
.+.++..+++.++++...++.+ +.+.++.+++++++.+.|+++ | .+....+ .+.++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~~~~~~~~ 288 (375)
T 2fnu_A 216 DFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----P-YFTPLHPLLKDKSSNHLYPI 288 (375)
T ss_dssp SSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----S-SEEESGGGCSSCCCCSCEEE
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----C-CccccCCCCCCCcceEEEEE
Confidence 1222356777776665554433 346677777888888877663 1 2322222 2334455
Q ss_pred EeccCCCch-hHHHHHHHHHHcCceeccC----C---------------------CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 385 EFDKTALPV-SAYDICLKMKERGILAKPT----H---------------------DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 385 ~~~~~~~~~-~~~~~~~~l~~~Gv~~~~~----~---------------------~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
.+... +. +..++.+.|.++||.+... . .+++||+++..+|++++++++++|+
T Consensus 289 ~~~~~--~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~ 366 (375)
T 2fnu_A 289 LMHQK--FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVL 366 (375)
T ss_dssp EECGG--GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EeCcc--ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHH
Confidence 55431 12 5778999999999998721 1 1679999988899999999999999
Q ss_pred HHHhccc
Q 012138 439 DVLELDL 445 (470)
Q Consensus 439 ~~l~~~~ 445 (470)
++++ ++
T Consensus 367 ~~~~-~~ 372 (375)
T 2fnu_A 367 KTFE-SF 372 (375)
T ss_dssp HHHH-HH
T ss_pred HHHH-Hh
Confidence 9988 65
No 187
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.91 E-value=4e-24 Score=211.69 Aligned_cols=319 Identities=11% Similarity=0.026 Sum_probs=199.9
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~ 152 (470)
.++|+..+-+.. ..++++.+++. .+. .+.....++++.+++++|. +++++++||++|++.+++.+
T Consensus 29 ~v~~~~~~~~~~---~~~~~v~~a~~----~~~-----~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~ 96 (374)
T 2aeu_A 29 ALYDLSGLSGGF---LIDEKDKALLN----TYI-----GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL 96 (374)
T ss_dssp GCEECSSCCCCC---CCCHHHHHHHT----STT-----HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred ceeeecccCCCC---CCCHHHHHHHH----Hhc-----CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC
Confidence 455766543222 26788888875 111 1122346777777778887 78999999999999999865
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccc--hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE-EE
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG-FL 229 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~-vi 229 (470)
. |+ .|++..++||+.... .....+. .+..+ .|+++|+++ + +++++ |+
T Consensus 97 -~----------gd-~Vl~~~~~y~~~~~~~~~~~~~g~------------~~~~v--~d~~~l~~~-~---~~~~~~v~ 146 (374)
T 2aeu_A 97 -K----------PK-KVIHYLPELPGHPSIERSCKIVNA------------KYFES--DKVGEILNK-I---DKDTLVII 146 (374)
T ss_dssp -C----------CS-EEEEECSSSSCCTHHHHHHHHTTC------------EEEEE--SCHHHHHTT-C---CTTEEEEE
T ss_pred -C----------CC-EEEEecCCCCccHHHHHHHHHcCc------------EEEEe--CCHHHHHhc-C---CCccEEEE
Confidence 2 55 788899999874321 1111111 11233 489999887 3 37889 88
Q ss_pred EccccCCCc-cccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEE
Q 012138 230 FEPIQGEAG-VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVL 306 (470)
Q Consensus 230 ~epi~n~~G-~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~ 306 (470)
+++++||+| ...+ +++|.++|++||++||+||+|..+. .+...........+|++ +++|.++| + ++|+++
T Consensus 147 ~~~p~nptG~~~~~----l~~i~~l~~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~di~~~S~sK~l~g-~-~~G~~~ 219 (374)
T 2aeu_A 147 TGSTMDLKVIELEN----FKKVINTAKNKEAIVFVDDASGARV-RLLFNQPPALKLGADLVVTSTDKLMEG-P-RGGLLA 219 (374)
T ss_dssp ECBCTTSCBCCHHH----HHHHHHHHHHHTCCEEEECTTHHHH-HHHTTCCCHHHHTCSEEEEETTSSSSS-C-SCEEEE
T ss_pred EccCCCCCCCCccc----HHHHHHHHHHcCCEEEEECCccccc-ccccccCCccccCCcEEEecCcccccC-c-ceEEEE
Confidence 888899999 4444 9999999999999999999987432 11110000011234665 78999875 6 999999
Q ss_pred ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHhhCC--CceE-EEeccc
Q 012138 307 ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL----RQHLFKIQQQFP--NYVK-EVRGRG 379 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l----~~~L~~l~~~~p--~~~~-~~~~~g 379 (470)
+++++++.+.........+.+++.++++.++++.+..+. .++..++...+ ++.|.+...... ..+. ...+.|
T Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g 298 (374)
T 2aeu_A 220 GKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLER-IRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTG 298 (374)
T ss_dssp EEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHH-HHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSE
T ss_pred ECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCce
Confidence 999999887653322334578899999998888763322 23333333333 444444221110 0122 245677
Q ss_pred eeEEEEeccCCC--chhHHHHHHHH-HHcCceeccCC-----CCEEEEecCC-CCCHHHHHHHHHHHHHHHhcccC
Q 012138 380 LFNAVEFDKTAL--PVSAYDICLKM-KERGILAKPTH-----DTIVRLTPPL-SISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 380 ~~~~~~~~~~~~--~~~~~~~~~~l-~~~Gv~~~~~~-----~~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.++++. +.... ..+..+++..+ .++||++.|+. .+++||+++. ..++++++++++.|+++++ ++.
T Consensus 299 ~~~~~~-~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~-~~~ 372 (374)
T 2aeu_A 299 FVIKRV-YKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIK-MAF 372 (374)
T ss_dssp EEEEEE-ESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH-HHT
T ss_pred EEEEee-cccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHH-HHh
Confidence 776663 22110 00112366555 46799998752 4589999753 2233458999999999888 653
No 188
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.91 E-value=4.3e-24 Score=212.91 Aligned_cols=286 Identities=15% Similarity=0.100 Sum_probs=191.2
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc-cCCc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDN 190 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~-~~~~ 190 (470)
..+.++...+++++|+++.+.+.+++++||++|+++++.++ + +|+ .|++..+.|++........ ....
T Consensus 62 ~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~~~~l~-~---------~gd-~Vi~~~~~y~~~~~~~~~~~~~~~ 130 (400)
T 3nmy_A 62 SRTHNPTRFAYERCVAALEGGTRAFAFASGMAATSTVMELL-D---------AGS-HVVAMDDLYGGTFRLFERVRRRTA 130 (400)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTS-C---------TTC-EEEEESSCCHHHHHHHHHTHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHHHHHHc-C---------CCC-EEEEeCCCchHHHHHHHHhhHhhc
Confidence 34567778999999999999889999999999998854322 1 355 7888899987654332221 0000
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
...+..++.+|+++|++++++ ++++|++|+++||+|.+.| +++|.++|++||++||+||+|+..
T Consensus 131 ---------g~~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~~ 194 (400)
T 3nmy_A 131 ---------GLDFSFVDLTDPAAFKAAIRA---DTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFASP 194 (400)
T ss_dssp ---------CCEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHH
T ss_pred ---------CeEEEEECCCCHHHHHHHhcc---CCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccc
Confidence 012456777899999999975 8999999999999999997 999999999999999999999721
Q ss_pred cccCCccccccCCCCcceeeccccccCC-CcceeE--EE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 271 ARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSA--VL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~--v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
.......++.++.+.+++|.++|+ . ++|+ ++ .++++++.+.......+.+.+++.++++...++.+. ..
T Consensus 195 ----~~~~~~~~g~div~~S~sK~l~g~g~-~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~--~r 267 (400)
T 3nmy_A 195 ----MLQRPLSLGADLVVHSATKYLNGHSD-MVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLP--LR 267 (400)
T ss_dssp ----HHCCGGGGTCSEEEEETTTTTTCSSS-CCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHH--HH
T ss_pred ----ccCChhhcCCcEEEecCccccCCCCC-cceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHH--HH
Confidence 111112235555566899999954 4 6655 33 477888777655555566678888888777666543 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccCCCchhHHHHHHHHHHcCce
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 408 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 408 (470)
.++..+++..+.+.|++ +| .+..+ ++.|.++++++.... .....+.+.|+-.++.
T Consensus 268 ~~~~~~~a~~l~~~L~~----~p-~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~--~~~~~~~~~l~~~~~~ 340 (400)
T 3nmy_A 268 MRAHCENALALAQWLET----HP-AIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF--DAAKRFCEKTELFTLA 340 (400)
T ss_dssp HHHHHHHHHHHHHHHTT----CT-TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH--HHHHHHHHHCSSSEEC
T ss_pred HHHHHHHHHHHHHHHHc----CC-CEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH--HHHHHHHHcCCcceEe
Confidence 44455555556555544 33 44444 667899999886421 2355666666533322
Q ss_pred eccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 409 AKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 409 ~~~~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.+ .++.+|++..+.. .+++++.|+++|+
T Consensus 341 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~----~~dli~dl~~al~ 397 (400)
T 3nmy_A 341 ESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIED----LGDLRGDLERALV 397 (400)
T ss_dssp SCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSC----HHHHHHHHHHHHC
T ss_pred cCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCC----HHHHHHHHHHHHh
Confidence 2211 2578999966544 4455555555553
No 189
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.91 E-value=8.6e-24 Score=207.93 Aligned_cols=311 Identities=13% Similarity=0.060 Sum_probs=197.5
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~ 171 (470)
.+|++.+++.+.+... ..+..+...+++++++++++.+..++++||++|+..+++++.. ++++.+|+
T Consensus 27 ~~p~v~~ai~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~---------~g~~~vvi 93 (359)
T 3pj0_A 27 VLTEALQNIDDNLESD----IYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWAD---------RKENRRVA 93 (359)
T ss_dssp HHHHHTTTSCTTCBCC----BTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH---------HHTCCEEE
T ss_pred CCHHHHHHHHhhcccC----cccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHh---------cCCCcEEE
Confidence 4677877776633211 1123456789999999999988888889999999999998876 35544455
Q ss_pred EccCccccccc--hh-cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCC-ccccCChhhH
Q 012138 172 CCGCFHGRTLA--AI-SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEA-GVIIPPDGYL 247 (470)
Q Consensus 172 ~~~~yhg~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~-G~~~~~~~~l 247 (470)
..+.+|..... .. ...+..... .+. +...+ |+++|+++ . +++++|++++++||+ |.++ +.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~g~~~~~---v~~--~~~~~---d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~-~~~~l 160 (359)
T 3pj0_A 94 YHPLSHLEIHEQDGLKELQQITPLL---LGT--ANQLL---TIDDIKSL-R---EPVSSVLIELPQREIGGQLP-AFEEL 160 (359)
T ss_dssp ECTTCHHHHSSTTHHHHHHCCEEEE---CSC--TTSCC---CHHHHHTC-S---SCCSEEEEESSBGGGTSBCC-CHHHH
T ss_pred EeccceeeehhcchHHHhcCceEEe---cCC--cCCCc---CHHHHHhc-c---CCceEEEEEecccCCCcccC-CHHHH
Confidence 44444433221 11 112211110 111 01112 88999887 3 378899988778886 7887 89999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCc--ccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcC---Cc
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLA--RSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG---EH 320 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g--~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~ 320 (470)
++|.++|++||++||+||+|..+. ..+... .......|++ ++||+++++. . |++++++++++.+... ..
T Consensus 161 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~sK~~~~~~-g-g~~~~~~~l~~~~~~~~~~~~ 236 (359)
T 3pj0_A 161 EKISEYCHEQGISLHLDGARLWEITPFYQKSA--EEICALFDSVYVSFYKGIGGIA-G-AILAGNDDFVQEAKIWKRRYG 236 (359)
T ss_dssp HHHHHHHHHHTCEEEEEETTCGGGHHHHTCCH--HHHHTTCSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEECcchhcchhhhCCCH--HHhhccCCEEEEeccccCCCcc-e-EEEECCHHHHHHHHHHHHHhC
Confidence 999999999999999999986321 112111 0011123554 8899988764 4 7888999998887532 12
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE--eccceeEEEEeccCCCchhHHHH
Q 012138 321 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--RGRGLFNAVEFDKTALPVSAYDI 398 (470)
Q Consensus 321 ~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~ 398 (470)
+..+..++.+ +++.++++... +..++..++++++.+.|+++ | .+... +..+.++++.+.... ..+..++
T Consensus 237 ~~~~~~~~~~-~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 307 (359)
T 3pj0_A 237 GDLISLYPYI-LSADYYFEKRI--GKMAEYFEAAKGLAERFNSC----S-GVKTVPEVPVSNMFHVYFENSA-DEIGAIL 307 (359)
T ss_dssp CCCSCCHHHH-HHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS----T-TEEEESSSCSSSEEEEEESSCH-HHHHHHH
T ss_pred CCcchhHHHH-HHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC----C-CceeeccCCcceEEEEEecCcc-chhHHHH
Confidence 2333334443 44445555432 33445666777777777653 2 34332 345566666565321 1246788
Q ss_pred HHHHHHcCceeccCC------CCEEEEecCC---CCCHHHHHHHHHHHHHHH
Q 012138 399 CLKMKERGILAKPTH------DTIVRLTPPL---SISSNELQEGSKALHDVL 441 (470)
Q Consensus 399 ~~~l~~~Gv~~~~~~------~~~iR~~~~~---~~t~e~i~~~~~~l~~~l 441 (470)
.+.|.++||++.|+. ..++|++... ..+.+++++++++|.+++
T Consensus 308 ~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 308 TKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp HHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 999999999998873 3578987542 368999999999998763
No 190
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.91 E-value=5.4e-23 Score=202.13 Aligned_cols=304 Identities=8% Similarity=0.015 Sum_probs=201.7
Q ss_pred CCHHHHHHHHHHHHHccccCC-CC--CCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 92 CHPKIMKALQEQAEKLTLSSR-AF--YNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~-~~--~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
.+|++.+++.+.+........ .+ ..+...+++++++++++. +.+++++||++|+..+++.+.. +
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~---------~- 84 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE---------K- 84 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS---------S-
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC---------C-
Confidence 568899998888765331111 11 123456788888888864 4699999999999999987743 2
Q ss_pred CcEEEEEccCccccccc-hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCCh
Q 012138 166 EAIIVSCCGCFHGRTLA-AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 244 (470)
Q Consensus 166 ~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~ 244 (470)
+.+++..+. ++.... .....+.... +.+... ...+ |+++|+ ++ +++++|++++++||+|.+.|
T Consensus 85 -~~i~~~~~~-~~~~~~~~~~~~g~~~~---~v~~~~-~~~~---d~~~l~--~~---~~~~~v~~~~~~nptG~~~~-- 148 (362)
T 3ffr_A 85 -KSFHCVNGS-FSKRFYEFAGELGREAY---KEEAAF-GKGF---YPADIT--VP---ADAEIICLTHNETSSGVSMP-- 148 (362)
T ss_dssp -EEEEEECSH-HHHHHHHHHHHTTCEEE---EEECCT-TCCC---CGGGCC--CC---TTCCEEEEESEETTTTEECC--
T ss_pred -cEEEEcCcH-HHHHHHHHHHHhCCCeE---EEecCC-CCCC---CHHHHh--cc---CCccEEEEEcCCCCcceeCC--
Confidence 344444444 332211 1111111110 000000 0111 778887 33 37888887777999999998
Q ss_pred hhHHHHHHHHHhc-CcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCCc-
Q 012138 245 GYLKAVRDLCSKY-NILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH- 320 (470)
Q Consensus 245 ~~l~~l~~l~~~~-gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~- 320 (470)
+++|.++|++| |+++|+|++|+.+... .... . .|++ +++|.++++. .+|++++++++++.+.....
T Consensus 149 --l~~i~~la~~~p~~~li~D~a~~~~~~~---~~~~--~--~d~~~~s~~K~~~~~~-G~g~~~~~~~~~~~~~~~~~g 218 (362)
T 3ffr_A 149 --VEDINTFRDKNKDALIFVDAVSSLPYPK---FDWT--K--IDSVFFSVQKCFGLPA-GLGVWILNDRVIEKSKALLAK 218 (362)
T ss_dssp --HHHHTTSGGGSTTSEEEEECTTTTTSSC---CCTT--S--CSEEEEETTSTTCCCS-CCEEEEEEHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHhCCCCEEEEecccccCCcc---cChh--H--CcEEEEecccccCCCC-ceEEEEECHHHHHHhhhcccc
Confidence 99999999999 9999999999732111 1111 1 4665 6679998554 67888899988776653221
Q ss_pred -------------------cC-CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-
Q 012138 321 -------------------GS-TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR- 376 (470)
Q Consensus 321 -------------------~~-t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~- 376 (470)
+. .++.+..+++++.++++.+.+ +.+.++.+++++++.+.|+++ | .+....
T Consensus 219 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~ 293 (362)
T 3ffr_A 219 RKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----K-VFSFGVE 293 (362)
T ss_dssp TCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----S-SEEESSS
T ss_pred CCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----c-CceeccC
Confidence 11 345677788888888887654 456677777778888777664 2 233222
Q ss_pred ----ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 377 ----GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 377 ----~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..+.++++.+.. +..++.+.|.++||.+.++ .++++|+++...++++++++++++|++++
T Consensus 294 ~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 294 DAKLRSMTTIVANTTM-----LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp CGGGBCSSEEEEEESS-----CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ChhhcCCceEEEecCC-----CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 124455554443 4778999999999999865 46899999988899999999999998875
No 191
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.91 E-value=8.3e-23 Score=205.03 Aligned_cols=312 Identities=16% Similarity=0.165 Sum_probs=196.5
Q ss_pred CCHHHHHHHHHHHHH-ccccCC--CCC--CCcHH----HHHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAEK-LTLSSR--AFY--NDKFP----VFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~-~~~~~~--~~~--~~~~~----~l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.+|++.+++.+++.. +...+. .++ ..... .+.++++++++.+.. +++++|++|++.+++.+..
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~------- 109 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALIN------- 109 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSC-------
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcC-------
Confidence 489999999988843 211111 111 12223 344578888887654 6667789999999998754
Q ss_pred CCCCCcEEEEEccCccccccch--hcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEcccc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAA--ISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQ 234 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~epi~ 234 (470)
+|+ .|++..++|++..... ....+.. .. ...++. .|+++|++++++. ++++|++.+.+
T Consensus 110 --~gd-~vl~~~~~~~~~~~~~~~~~~~g~~-~~---------~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~ 174 (417)
T 3n0l_A 110 --PGD-KILGMDLSHGGHLTHGAKVSSSGKM-YE---------SCFYGVELDGRIDYEKVREIAKKE--KPKLIVCGASA 174 (417)
T ss_dssp --TTC-EEEEECC----------------CC-SE---------EEEECCCTTSSCCHHHHHHHHHHH--CCSEEEECCSS
T ss_pred --CCC-EEEecccccccccchhhhhhhhcce-ee---------eEeccCCCCCCcCHHHHHHHHHhc--CCeEEEECCcc
Confidence 455 7888888886643211 1111110 00 111111 2899999999843 67888876634
Q ss_pred CCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--eccccccCCCcceeEEEec-HH
Q 012138 235 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLAD-KE 310 (470)
Q Consensus 235 n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~-~~ 310 (470)
+|.+.+ +++|.++|++||++||+||+|. |+...|.... . .. ..|++ +++|++ +|. ++|+++++ ++
T Consensus 175 --~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~-~~-~~di~~~s~sK~l-~g~-~~G~~~~~~~~ 243 (417)
T 3n0l_A 175 --YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS-P-FP-YAHVVSSTTHKTL-RGP-RGGIIMTNDEE 243 (417)
T ss_dssp --CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC-C-TT-TCSEEEEESSTTT-CSC-SCEEEEESCHH
T ss_pred --cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC-c-cc-cceEEEeeCcccc-CCC-CeeEEEECCHH
Confidence 388887 9999999999999999999985 4333332211 0 11 23666 555999 455 78999998 78
Q ss_pred HHhhcCcCCc-cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEEE
Q 012138 311 VMLCIQPGEH-GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAV 384 (470)
Q Consensus 311 ~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~~ 384 (470)
+++.+..... +.+.+.++..++++.+++....+ +.+.++.+++++++.+.|.+.+ +.... ..+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~ 317 (417)
T 3n0l_A 244 LAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRK------FKLVSDGTDNHLVLM 317 (417)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGGGSCSSSEEEE
T ss_pred HHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC------ceeccCCCCceEEEE
Confidence 8887754432 22334566677776666665332 4566777777788888887631 22222 23446666
Q ss_pred EeccCCCchhHHHHHHHHHHcCceeccC----------CCCEEEEecCCC----CCHHHHHHHHHHHHHHHhccc
Q 012138 385 EFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVRLTPPLS----ISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------~~~~iR~~~~~~----~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.... .+...+.+.|.++||.+.+. ..+.+|++++.. ++++++++++++|.++++ +.
T Consensus 318 ~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~-~~ 389 (417)
T 3n0l_A 318 SFLDRE--FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILD-DV 389 (417)
T ss_dssp ECTTSS--SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred EcccCC--CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh-cc
Confidence 554322 35778888999999998732 236799986533 679999999999999998 64
No 192
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.91 E-value=4.4e-23 Score=213.52 Aligned_cols=341 Identities=12% Similarity=0.105 Sum_probs=201.1
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHH-hhhh-------CCCeEEecCChhHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERL-TSMF-------GYDMVLPMNTGAEGVETA 148 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~-------~~~~v~~~~sGteA~~~a 148 (470)
++||..+. .++.+|.+.+++.+.+....+.......++++++++.+ .+.. ..++|++|+|+++|+..+
T Consensus 106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~ 181 (546)
T 2zy4_A 106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI 181 (546)
T ss_dssp HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence 45665553 24567888888888775333222223344566665544 3332 136899999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc-CCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS-CDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++++....... +|+ .|++.+|+|++....+.... +..... .+..++ .+.+ |+++|+++++. +++
T Consensus 182 ~~~l~~~~l~~----~Gd-~Vlv~~P~y~~~~~~~~~~~~g~~~~~---v~~~~~~~~~~---d~~~l~~~~~~---~~k 247 (546)
T 2zy4_A 182 FESLKLNGLLK----AGD-KVAIGMPVFTPYIEIPELAQYALEEVA---INADPSLNWQY---PDSELDKLKDP---AIK 247 (546)
T ss_dssp HHHHHHTTSSC----TTC-EEEEEESCCHHHHHHHHSTTSCCEEEE---EECBGGGTTBC---CHHHHGGGGST---TEE
T ss_pred HHHhhhhhcCC----CCC-EEEEeCCCCccHHHHHHHcCCCcEEEE---EecCcccCCCC---CHHHHHHhhCC---CCe
Confidence 98742101111 454 78889999987765432211 110000 000000 0112 78888877643 788
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHH--HhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCccee
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLC--SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVS 303 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~--~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig 303 (470)
+|++..++||||.++ +.+.+++|.++| ++||++||+||+|++|......+.....+....+.||||.++ +|+ |+|
T Consensus 248 ~v~l~~p~NPtG~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~Gl-RiG 325 (546)
T 2zy4_A 248 IFFCVNPSNPPSVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGW-RLG 325 (546)
T ss_dssp EEEEESSCSSSCBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGG-CEE
T ss_pred EEEEECCCCCCCccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCc-ceE
Confidence 887555599999999 899999999999 889999999999998764322111111112223559999997 898 999
Q ss_pred EEEecHH-HHhhcCcC------------------------------------CccCCCCCCHHHHHHH-HHH-HHHHhh-
Q 012138 304 AVLADKE-VMLCIQPG------------------------------------EHGSTFGGNPLASAVA-IAS-LDVIRD- 343 (470)
Q Consensus 304 ~v~~~~~-~~~~~~~~------------------------------------~~~~t~~~~~~~~aaa-~a~-l~~~~~- 343 (470)
+++++++ +++.+... ....+.+.+.+.+.++ ..+ ...+.+
T Consensus 326 ~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~ 405 (546)
T 2zy4_A 326 VVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEA 405 (546)
T ss_dssp EEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTT
T ss_pred EEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhcc
Confidence 9998875 66554210 0012234455555442 211 122322
Q ss_pred h----hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE-EEEeccC-----CC--------c-hhHHHHHHHHHH
Q 012138 344 E----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDKT-----AL--------P-VSAYDICLKMKE 404 (470)
Q Consensus 344 ~----~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~-~~~~~~~-----~~--------~-~~~~~~~~~l~~ 404 (470)
+ .+++.++++.+.+.+.|. .+ +....+.+.|+ ++.+... .. + .+...+.+.|.+
T Consensus 406 ~~~~~~~r~~~~~r~~~l~~~L~-----~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~ 478 (546)
T 2zy4_A 406 DEYKHTLKQLIRRRETTLYRELG-----MP--PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADE 478 (546)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGT-----SS--CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----CC--cccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHH
Confidence 2 233333333333333331 11 22223455555 5544210 00 0 023346667778
Q ss_pred cCceeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 405 RGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 405 ~Gv~~~~~~-----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+||.+.|+. .+++||++. ..+++++++++++|+++++ ++.
T Consensus 479 ~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~-~~~ 523 (546)
T 2zy4_A 479 TGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMAD-ELY 523 (546)
T ss_dssp HSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHH-HHH
T ss_pred CCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHH-HHH
Confidence 899999863 578999965 3589999999999999998 665
No 193
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.91 E-value=1.4e-22 Score=203.70 Aligned_cols=315 Identities=13% Similarity=0.114 Sum_probs=206.1
Q ss_pred CCHHHHHHHHHHHHHcccc-C--CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLS-S--RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~-~--~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~ 167 (470)
-+|++.+++.++++..... + .....++..++++++++++|.+.+++++||++|++.+++.+ .. +|+
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~---------~gd- 83 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIG---------EGD- 83 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCC---------TTC-
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC---------CcC-
Confidence 4689999999999875332 1 11234558999999999999888999999999999999876 32 454
Q ss_pred EEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 168 IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 168 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
.|++..++|++........+..... .+..++...+ |+++|++++++ ++++|++ .||+|.+.+ +
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~---d~~~l~~~i~~---~~~~v~~---~~~~G~~~~----~ 146 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNVNALPVF----VDVEADTYCI---DPQLIKSAITD---KTKAIIP---VHLFGSMAN----M 146 (418)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEE----ECBCTTTCSB---CHHHHGGGCCT---TEEEECC---BCCTTCCCC----H
T ss_pred EEEECCCccHhHHHHHHHcCCEEEE----EecCCCCCCc---CHHHHHHhhCC---CCeEEEE---eCCcCCccc----H
Confidence 7888999987765443322221111 1111111122 89999988865 7888885 458998877 9
Q ss_pred HHHHHHHHhcCcEEEEeccccCCc-ccCCccccccCCCCcceeec--cccccCCCcceeEEEe-cHHHHhhcCcCCcc--
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLA-RSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLA-DKEVMLCIQPGEHG-- 321 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g-~~G~~~~~~~~~~~pdi~s~--sK~l~gG~~~ig~v~~-~~~~~~~~~~~~~~-- 321 (470)
++|.++|++||++||+||+|+.+. ..+..+ ..++ ..++.+| +|.+++| ++|++++ ++++++.+......
T Consensus 147 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~-~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~~~~~~~~~ 221 (418)
T 2c81_A 147 DEINEIAQEHNLFVIEDCAQSHGSVWNNQRA--GTIG-DIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELIQQLRADSR 221 (418)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHHBTTE
T ss_pred HHHHHHHHHCCCEEEEECcccccCccCCEec--cccc-ceEEEeccCCcccCCC--CeEEEEECCHHHHHHHHHHHHhCc
Confidence 999999999999999999999654 333221 1111 2345577 8999885 8899998 47776655321100
Q ss_pred --------------------CCC----CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-e
Q 012138 322 --------------------STF----GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-R 376 (470)
Q Consensus 322 --------------------~t~----~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~ 376 (470)
... ..+++.++.+...++.+ +.+.++.+++.+++.+.|.++ | .+... .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~ 294 (418)
T 2c81_A 222 VYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSKI----D-GIKVMKR 294 (418)
T ss_dssp EECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTS----T-TEEECCC
T ss_pred cccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----C-CcccCCC
Confidence 001 13444444443333333 345566666677777766543 2 23322 2
Q ss_pred ccc----e--eEEEEeccC-CCchhHHHHHHHHHHc-Cce---eccCC--------------------------------
Q 012138 377 GRG----L--FNAVEFDKT-ALPVSAYDICLKMKER-GIL---AKPTH-------------------------------- 413 (470)
Q Consensus 377 ~~g----~--~~~~~~~~~-~~~~~~~~~~~~l~~~-Gv~---~~~~~-------------------------------- 413 (470)
+.+ . ++.+.+... ..+.+..++.+.|.++ ||. +.++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (418)
T 2c81_A 295 PPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLH 374 (418)
T ss_dssp CTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCC
T ss_pred CCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCC
Confidence 233 2 233545420 0012678899999999 999 76431
Q ss_pred --------CCEEEEecCCCC-CHHHHHHHHHHHHHHHhcccC
Q 012138 414 --------DTIVRLTPPLSI-SSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 414 --------~~~iR~~~~~~~-t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+.+||+++..+ |+||+++++++|+++++ ++.
T Consensus 375 ~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~-~~~ 415 (418)
T 2c81_A 375 YPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELAR-KFC 415 (418)
T ss_dssp CHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH-TTC
T ss_pred ChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHH-hhc
Confidence 148999999999 99999999999999998 754
No 194
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.90 E-value=4.3e-23 Score=205.59 Aligned_cols=284 Identities=15% Similarity=0.106 Sum_probs=189.7
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+..+...++++.++++++.+.+++++||++|++.+++ +.+ +|+ .|++..+.||+..........
T Consensus 52 ~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~~---------~gd-~Vi~~~~~y~~~~~~~~~~~~----- 115 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SLP---------QGS-HAVSIGDVYGGTHRYFTKVAN----- 115 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TSC---------SSC-EEEEESSCCHHHHHHHHHTST-----
T ss_pred CCChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-HcC---------CCC-EEEEeCCCchHHHHHHHHHHH-----
Confidence 3455678899999999988888888899999999998 533 455 788888888764321100000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc----CcEEEEeccccC
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY----NILMIADEIQSG 269 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~----gillI~Dev~~g 269 (470)
.....+..++.+| ++|++++++ ++++|++++++||+|.++| +++|.++|++| |+++|+||+|+.
T Consensus 116 ----~~G~~v~~v~~~d-~~l~~~i~~---~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~ 183 (393)
T 1n8p_A 116 ----AHGVETSFTNDLL-NDLPQLIKE---NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS 183 (393)
T ss_dssp ----TTCSCCEEESSHH-HHHHHHSCS---SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH
T ss_pred ----HcCcEEEEeCCCh-HHHHHhccc---CceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCccc
Confidence 0012245666667 889888865 7999999999999999998 99999999999 999999999995
Q ss_pred CcccCCccccccCCCCccee--eccccccC-CCcce-eEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~i-g~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
+.+. ..+ .++ .|++ +++|.+++ |+ |+ |+++++ +++++.+.........+.++..++++..+++.+.
T Consensus 184 ~~~~-~~~---~~~--~di~~~S~sK~~g~~G~-rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~-- 254 (393)
T 1n8p_A 184 PYIS-NPL---NFG--ADIVVHSATKYINGHSD-VVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLH-- 254 (393)
T ss_dssp HHHC-CGG---GGT--CSEEEEETTTTTTCSSC-CCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--
T ss_pred cccC-CHH---HcC--CeEEEEECcccccCCCC-ceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHH--
Confidence 5332 222 123 4655 88999994 76 88 888884 7888877643222223446777776666665432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCc-eEEE------------------ec-c-ceeEEEEeccCCCchhHHHHHHHHH
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNY-VKEV------------------RG-R-GLFNAVEFDKTALPVSAYDICLKMK 403 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~-~~~~------------------~~-~-g~~~~~~~~~~~~~~~~~~~~~~l~ 403 (470)
...++..++...+.+.|++. | . +..+ ++ . |.++.+.+.... .+...+.+.|.
T Consensus 255 ~~~~~~~~~~~~l~~~L~~~----~-~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~--~~~~~~l~~l~ 327 (393)
T 1n8p_A 255 LRVRQAALSANKIAEFLAAD----K-ENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA--EAASKFASSTR 327 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTSC----T-TTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH--HHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhC----C-CCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH--HHHHHHHhhCC
Confidence 22333444445555554432 1 1 2211 12 4 778888885421 25566666665
Q ss_pred HcCceec----------c---C--------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 404 ERGILAK----------P---T--------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 404 ~~Gv~~~----------~---~--------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..++.++ | . ..+.+||++....++++|+.+.++|+++.
T Consensus 328 ~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 328 LFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp SSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred cceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 4343321 1 1 14789999999999999999999988753
No 195
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.90 E-value=1.1e-22 Score=204.93 Aligned_cols=281 Identities=17% Similarity=0.171 Sum_probs=191.7
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc---hhcccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA---AISMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~---~~~~~~~~ 190 (470)
+.++...++++++++++|.+..++++||++|+..+++.+.+ +|+ .||+..+.|++.... .....+
T Consensus 111 ~~~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~---------~Gd-~Vi~~~~~y~~~~~~~~~~~~~~G-- 178 (445)
T 1qgn_A 111 YGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVP---------AGG-HIVTTTDCYRKTRIFIETILPKMG-- 178 (445)
T ss_dssp GCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC---------SSC-EEEEETTSCHHHHHHHHHTGGGGT--
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEcCCCchhHHHHHHHHHHHcC--
Confidence 45667889999999999888888889999999999986643 455 788888887653221 111111
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe-EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI-AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~-~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
..+..++.+|+++|++++++ ++ ++|++++++||+|.+.| +++|.++|++||+++|+||+|+.
T Consensus 179 ----------~~v~~v~~~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~ 241 (445)
T 1qgn_A 179 ----------ITATVIDPADVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT 241 (445)
T ss_dssp ----------CEEEEECSSCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC
T ss_pred ----------CEEEEeCCCCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcc
Confidence 12456677799999999987 67 99999999999999998 99999999999999999999973
Q ss_pred CcccCCccccccCCCCccee--eccccccCC-CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
.. . .......+|++ +++|.++|+ ..++|++++++++++.+...........+++.++++...++.+.. .
T Consensus 242 ~~-~-----~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~--r 313 (445)
T 1qgn_A 242 PL-N-----QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHL--R 313 (445)
T ss_dssp TT-T-----CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHHH--H
T ss_pred cc-c-----CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHHH--H
Confidence 21 1 11223446776 588999853 226999999999888775432222223567776666555554422 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccCCCchhHHHHHHHHHHcCce
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 408 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 408 (470)
.++..++..++.+.|++. | .+..+ ++.|.++.+.+.... .....+.+.|...++.
T Consensus 314 ~~~~~~~a~~l~~~L~~~----p-~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~--~~~~~~l~~l~~~~i~ 386 (445)
T 1qgn_A 314 VQQQNSTALRMAEILEAH----P-KVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL--LTTAKFVDALKIPYIA 386 (445)
T ss_dssp HHHHHHHHHHHHHHHHTC----T-TEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH--HHHHHHHHHCSSSEEC
T ss_pred HHHHHHHHHHHHHHHhcC----C-CceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH--HHHHHHHHhCCCceEe
Confidence 333444456666666553 2 22111 246888888886421 2356677666533333
Q ss_pred eccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 409 AKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 409 ~~~~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.+ .++.|||++. .||++++++.|+++++
T Consensus 387 ~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 387 PSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALD 443 (445)
T ss_dssp SCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred ccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 2211 1479999954 4689999999999887
No 196
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.90 E-value=5e-22 Score=198.08 Aligned_cols=311 Identities=14% Similarity=0.184 Sum_probs=206.3
Q ss_pred CHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEE
Q 012138 93 HPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~ 171 (470)
+|++.+++.+.++.. +.+. ..+...++++.++++++.+++++++||++|++.+++.+ .. +|+ .|++
T Consensus 11 ~~~v~~a~~~~~~~~-~~~~--~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~---------~gd-~Vl~ 77 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIAP--LGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVK---------QDD-IVLA 77 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTSC--TTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCC---------TTC-EEEE
T ss_pred CHHHHHHHHHHHHcC-CccC--CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC---------CCC-EEEE
Confidence 467888888888652 2111 12347889999999999999999999999999999876 32 454 7888
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++|++........+..... .+.. +...+ |+++|++++++.++++++|++++ |+|...+ +++|.
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~----v~~~-~~~~~---d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~ 142 (394)
T 1o69_A 78 SSFTFIASVAPICYLKAKPVF----IDCD-ETYNI---DVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIV 142 (394)
T ss_dssp ESSSCGGGTHHHHHTTCEEEE----ECBC-TTSSB---CHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEE----EEeC-CCCCc---CHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHH
Confidence 999988765544332221111 1110 00112 89999999986433578888765 6887776 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEec-HHHHhhcCcCCc-------
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEH------- 320 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~-~~~~~~~~~~~~------- 320 (470)
++|++||++||+||+|+ |+.+.|.... . ++ ..|+.+|| |.++| . ++|+++++ +++++.+.....
T Consensus 143 ~l~~~~~~~li~Dea~~~g~~~~~~~~~-~-~~-~~~~~s~s~~K~l~~-~-~~G~~~~~~~~l~~~l~~~~~~~~~~~~ 217 (394)
T 1o69_A 143 EICKENDIVLIEDAAEALGSFYKNKALG-T-FG-EFGVYSYNGNKIITT-S-GGGMLIGKNKEKIEKARFYSTQARENCL 217 (394)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTEETT-S-SS-SEEEEECCTTSSSCC-S-SCEEEEESCHHHHHHHHHHTBTCCCSSS
T ss_pred HHHHHcCCEEEEECcCcccceeCCcccc-c-cc-CcEEEEEeCCccCCC-C-CceEEEECCHHHHHHHHHHHHhccccCc
Confidence 99999999999999999 7655543211 1 11 35788885 66664 4 89999995 787776643211
Q ss_pred -------cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec-cce--eEEEEeccCC
Q 012138 321 -------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGL--FNAVEFDKTA 390 (470)
Q Consensus 321 -------~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~-~g~--~~~~~~~~~~ 390 (470)
+..+..+++.++++...++.++ +..++.+++.+++.+.|.++ ..+ ...... .+. ++.+.++...
T Consensus 218 ~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~-~~~---~~~~~~~~~~~~~~~i~~~~~~ 291 (394)
T 1o69_A 218 HYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEY-FSF---LDELENSRSNRWLSTALINFDK 291 (394)
T ss_dssp SCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTT-EEC---CCCCTTEECCCSSEEEEESCCG
T ss_pred cccccccCcccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc-ccc---cCCCCCCcceeEEEEEEecchh
Confidence 1112246677777665555443 36677888888888888765 222 111000 122 3555554210
Q ss_pred ------------------CchhHHHHHHHHHHcCceeccCCC------------------------CEEEEecCCCCCHH
Q 012138 391 ------------------LPVSAYDICLKMKERGILAKPTHD------------------------TIVRLTPPLSISSN 428 (470)
Q Consensus 391 ------------------~~~~~~~~~~~l~~~Gv~~~~~~~------------------------~~iR~~~~~~~t~e 428 (470)
.+.+..++.+.|.++||.+.++.. ..+|+.....+|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e 371 (394)
T 1o69_A 292 NELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKD 371 (394)
T ss_dssp GGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHH
T ss_pred hccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHH
Confidence 013677899999999999876521 34555556779999
Q ss_pred HHHHHHHHHHHHHh
Q 012138 429 ELQEGSKALHDVLE 442 (470)
Q Consensus 429 ~i~~~~~~l~~~l~ 442 (470)
|+++++++|++++.
T Consensus 372 di~~~~~~l~~~~~ 385 (394)
T 1o69_A 372 DVYEISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999887
No 197
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.90 E-value=4.2e-22 Score=204.69 Aligned_cols=344 Identities=13% Similarity=0.083 Sum_probs=211.4
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-----CCcHHHHHHHHhhhhCC---CeEEecCChhH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-----NDKFPVFAERLTSMFGY---DMVLPMNTGAE 143 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~---~~v~~~~sGte 143 (470)
..+..|+|+..+ ++.+|.+.+++...+.+.. ...+. ..+..++.+++++++|. +.++||+||++
T Consensus 98 ~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~--~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~ 169 (497)
T 2qma_A 98 TQHPDCIAHLHT------PPLMPAVAAEAMIAALNQS--MDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ 169 (497)
T ss_dssp TTSTTBCSSSCC------CCBHHHHHHHHHHHHHCCC--TTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred CCCCCeeEeCCC------CCcHHHHHHHHHHHhhccc--ccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence 345667776554 2356788887765543221 11111 12234456678888876 67999999999
Q ss_pred HHHHHHHHHHHhchh--------cccCCC--CCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC----
Q 012138 144 GVETALKLARKWGYV--------KKKFSI--DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---- 209 (470)
Q Consensus 144 A~~~al~~~~~~~~~--------~~~~~~--g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 209 (470)
|+..++++++.+... .+|.++ ++..|++.... |.+...+....+.. . ..+..+|.+
T Consensus 170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~-h~s~~~~~~~~g~g-~--------~~v~~v~~~~~~~ 239 (497)
T 2qma_A 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKS-HFTVQKSASWMGLG-E--------KAVMTVDANADGT 239 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTS-CTHHHHHHHHTTSC-G--------GGEEEECBCTTSS
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCc-hHHHHHHHHHcCCC-c--------ccEEEEecCCCCc
Confidence 999999987643211 122221 23256555545 55544443333211 0 012333333
Q ss_pred -CHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC-
Q 012138 210 -DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV- 284 (470)
Q Consensus 210 -d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~- 284 (470)
|+++|++++++. +.++.+|+++..+|++|.+.| +++|.++|++||++|++|++|+++..... +.....++
T Consensus 240 ~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~ 314 (497)
T 2qma_A 240 MDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVE 314 (497)
T ss_dssp BCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGG
T ss_pred CCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcc
Confidence 899999999763 112447777666999999988 99999999999999999999997655444 32223455
Q ss_pred Ccceeec--cccccCCCcceeEEEecHH-HHhhcCcCC----ccCCCCCCHHH----------HHHHHHHHHHHhh---h
Q 012138 285 RPDMVIL--GKALGGGVIPVSAVLADKE-VMLCIQPGE----HGSTFGGNPLA----------SAVAIASLDVIRD---E 344 (470)
Q Consensus 285 ~pdi~s~--sK~l~gG~~~ig~v~~~~~-~~~~~~~~~----~~~t~~~~~~~----------~aaa~a~l~~~~~---~ 344 (470)
.+|++++ +|++++++ ++|+++++++ .++.+.... ...+...++.. .....++++.+.. +
T Consensus 315 ~~D~i~~s~hK~l~~p~-~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~ 393 (497)
T 2qma_A 315 RAHSISVDFHKLFYQTI-SCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALG 393 (497)
T ss_dssp GCSEEEEETTTTTCCCS-SCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHH
T ss_pred cCCEEEEcchhccCCCc-ceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHH
Confidence 5687755 89998887 9999997644 344443210 00000112221 1123344555443 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCc--hhHHHHHHHHHHcCceeccC----CCCEE
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALP--VSAYDICLKMKERGILAKPT----HDTIV 417 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~----~~~~i 417 (470)
++.++..++++++.+.|+++ | .+..+ .+.+.++.+.+...... ....++.+.|.++|+++.+. +.+++
T Consensus 394 ~~~~~~~~~a~~l~~~L~~~----~-~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~l 468 (497)
T 2qma_A 394 DMYDHLLAQTLEVADMIRTN----D-QFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTAL 468 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----T-TEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhC----C-CeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEE
Confidence 46667777788887777653 2 23321 34566777766532100 11346778889999988642 34689
Q ss_pred EEec-CCCCCHHHHHHHHHHHHHHHhccc
Q 012138 418 RLTP-PLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 418 R~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
|+++ +..+|++++++++++|+++++ ++
T Consensus 469 Ris~~~~~~t~edi~~~~~~l~~~~~-~~ 496 (497)
T 2qma_A 469 KFTILNPCLTTSDFESLLSKINMLAV-EL 496 (497)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHH-hh
Confidence 9997 788999999999999999987 64
No 198
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.90 E-value=7.9e-23 Score=205.61 Aligned_cols=281 Identities=20% Similarity=0.163 Sum_probs=189.8
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh---cccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI---SMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~---~~~~~~ 190 (470)
+.++...+++++++++++.+..++++||++|++.+++.+.. +|+ .|++..++||+...... ...+
T Consensus 55 ~~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~~---------~gd-~vi~~~~~~~~~~~~~~~~~~~~g-- 122 (421)
T 2ctz_A 55 IMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQ---------AGD-NIVSTPNLYGGTFNQFKVTLKRLG-- 122 (421)
T ss_dssp TBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEECSCCCHHHHHHHHTHHHHTT--
T ss_pred CCChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHhC---------CCC-EEEEeCCCchHHHHHHHHHHHHcC--
Confidence 34566789999999999988888888999999999987643 344 88889999887654431 1111
Q ss_pred ccccCCCCCCCCeeee-cCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 191 EAIRGFGPLLPGHLKV-DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~-~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
..+..+ +.+|+++|++++++ ++++|++++++||+|.+.| +++|.++|++||+++|+||+|++
T Consensus 123 ----------~~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~ 185 (421)
T 2ctz_A 123 ----------IEVRFTSREERPEEFLALTDE---KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGM 185 (421)
T ss_dssp ----------CEEEECCTTCCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG
T ss_pred ----------CEEEEECCCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccc
Confidence 113456 66699999999976 8999999999999999997 99999999999999999999954
Q ss_pred CcccCCccccccCCCCccee--eccccccC-CCcceeEEEec---HHH----HhhcCc---CCcc---------------
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD---KEV----MLCIQP---GEHG--------------- 321 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~---~~~----~~~~~~---~~~~--------------- 321 (470)
++..+..+ +..+|++ +++|.+++ |. ++|++++. +++ .+.+.+ +.++
T Consensus 186 ~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~-~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~ 259 (421)
T 2ctz_A 186 GGYLLRPL-----AWGAALVTHSLTKWVGGHGA-VIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVK 259 (421)
T ss_dssp GGTSCCGG-----GGTCSEEEEETTTTTTCSSC-CCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHH
T ss_pred ccccCCcc-----ccCCeEEEECCcccccCCCC-cEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHH
Confidence 55444333 2346877 88999995 65 88887764 111 111211 0111
Q ss_pred --------CCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE------------------
Q 012138 322 --------STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------------------ 375 (470)
Q Consensus 322 --------~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------ 375 (470)
.....+++.++++...++.+.. ..++..++..++.+.|.+. | .+..+
T Consensus 260 ~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~--r~~~~~~~a~~l~~~L~~~----p-~v~~v~~p~~~~~~~~~~~~~~~ 332 (421)
T 2ctz_A 260 ARVDGLRDQGQALGPFEAWVVLLGMETLSL--RAERHVENTLHLAHWLLEQ----P-QVAWVNYPGLPHHPHHDRAQKYF 332 (421)
T ss_dssp HHHTHHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTC----T-TEEEEECTTSTTCTTHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHcCcchHHH--HHHHHHHhHHHHHHHHHhC----C-CeeEEECCCCCCCCCHHHHHHhc
Confidence 1225678887777776665432 3344445666666666553 2 34333
Q ss_pred -eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC---------------------------CCCEEEEecCCCCCH
Q 012138 376 -RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---------------------------HDTIVRLTPPLSISS 427 (470)
Q Consensus 376 -~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---------------------------~~~~iR~~~~~~~t~ 427 (470)
++.|.++.+++.... .....+.+.|...++.+..+ .++.||+++.+
T Consensus 333 ~~~~g~ivsf~l~~~~--~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~---- 406 (421)
T 2ctz_A 333 KGKPGAVLTFGLKGGY--EAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL---- 406 (421)
T ss_dssp TTCCCSEEEEEETTHH--HHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----
T ss_pred cCCCceEEEEEeCCCH--HHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----
Confidence 367889999886421 23455555554434333211 14799999544
Q ss_pred HHHHHHHHHHHHHHh
Q 012138 428 NELQEGSKALHDVLE 442 (470)
Q Consensus 428 e~i~~~~~~l~~~l~ 442 (470)
|+++++++.|+++++
T Consensus 407 e~~~~li~~l~~al~ 421 (421)
T 2ctz_A 407 EHVEDLKAELKEALA 421 (421)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhC
Confidence 688888888887763
No 199
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.89 E-value=1.6e-22 Score=202.18 Aligned_cols=287 Identities=15% Similarity=0.121 Sum_probs=190.5
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+.++...++++.++++++.+..+++++|++|+..+++ +.+ +|+ .|++..+.|++............+
T Consensus 64 ~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~~---------~gd-~Vl~~~~~y~~~~~~~~~~~~~~G-- 130 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LLK---------AGD-QIICMDDVYGGTNRYFRQVASEFG-- 130 (403)
T ss_dssp --CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TSC---------TTC-EEEEESSCCHHHHHHHHHTGGGGT--
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhC---------CCC-EEEEeCCCcchHHHHHHHHHHHcC--
Confidence 4456678999999999988777778888999999988 532 454 788899998764321110100000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC-cEEEEeccccCCcc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN-ILMIADEIQSGLAR 272 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g-illI~Dev~~g~g~ 272 (470)
..+..++.+|+++|++++++ ++++|++++++||+|.+.+ +++|.++|++|| +++|+||+|+++..
T Consensus 131 -------~~v~~v~~~d~~~l~~~i~~---~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~~ 196 (403)
T 3cog_A 131 -------LKISFVDCSKIKLLEAAITP---ETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPYF 196 (403)
T ss_dssp -------CEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTTT
T ss_pred -------CEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccccc
Confidence 12456677799999998875 7999999988999999997 999999999999 99999999985432
Q ss_pred cCCccccccCCCCccee--eccccccC--CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
...+ +..+|++ +++|.++| |. ++|++++ ++++++.+.......+.+.+++.++++...++.+.. ..
T Consensus 197 -~~~~-----~~~~div~~S~sK~~~g~~~~-~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~--r~ 267 (403)
T 3cog_A 197 -QRPL-----ALGADISMYSATKYMNGHSDV-VMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHV--RM 267 (403)
T ss_dssp -CCTT-----TTTCSEEEEETTTTTTCSSCC-CCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH--HH
T ss_pred -CCcc-----ccCCeEEEEcChhhccCCCCC-eEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH--HH
Confidence 1111 2345666 88999984 44 7899998 478887776544444556788888887777764422 23
Q ss_pred HHHHHHHHHHHHHHHHHH----------hhCCCceE----EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc--
Q 012138 348 ERSAHLGEELRQHLFKIQ----------QQFPNYVK----EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-- 411 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~----------~~~p~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-- 411 (470)
++..++...+.+.|++.. ..+| .+. ..++.|.++.|.+... ...+.+.|.+.|+.+..
T Consensus 268 ~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p-~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~l~~~~i~~~~~s 341 (403)
T 3cog_A 268 EKHFKNGMAVAQFLESNPWVEKVIYPGLPSHP-QHELVKRQCTGCTGMVTFYIKGT-----LQHAEIFLKNLKLFTLAES 341 (403)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTST-THHHHHHHCSCCCSEEEEEESSC-----HHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCCCC-cHHHHHhcCCCCceEEEEEecCC-----HHHHHHHHHhCCcceEccC
Confidence 333334444444443320 0111 111 1124588888877532 24455666666874321
Q ss_pred -C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 412 -T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 412 -~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+ .++.+||++....++++|+.+.++|+++++
T Consensus 342 ~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 342 LGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp CSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred CCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 1 157999999887777777777777766554
No 200
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.89 E-value=5.4e-22 Score=198.07 Aligned_cols=324 Identities=11% Similarity=0.053 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHcc-ccCCCCCCCcHHHHHHHHhhhh-C----CC--eEEecCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 94 PKIMKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF-G----YD--MVLPMNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 94 p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~----~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
|.|.+|..+.++... +.+. +..-..+|.+.+++++ + .+ ..+-|.+||.|+..++..+.+. +. .+|
T Consensus 65 ~~Vk~A~~~~~~~~~~~~Y~--p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~-~~----~pg 137 (420)
T 4h51_A 65 RVVRKAEQLLLDMNLDYEYL--PISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRV-FD----AET 137 (420)
T ss_dssp HHHHHHHHHHHHTTCCCCCC--CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTT-SC----TTT
T ss_pred HHHHHHHHHHhcCCCCCCCC--CcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHh-cC----CCC
Confidence 678887766665422 1111 1122344444444432 2 12 2455889999999888876542 11 145
Q ss_pred CcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChh
Q 012138 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDG 245 (470)
Q Consensus 166 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~ 245 (470)
+ .|++.+|+|..+.......++....... .+.++...+ |.+.+.+.++...+++++++.++.+||||.++ +.+
T Consensus 138 d-~V~ip~P~w~~y~~i~~~aG~~~V~~~~--~~~~~~~~~---d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~-~~~ 210 (420)
T 4h51_A 138 T-PIYLSDPTWPNHYGVVKAAGWKNICTYA--YYDPKTVSL---NFEGMKKDILAAPDGSVFILHQCAHNPTGVDP-SQE 210 (420)
T ss_dssp S-CEEEEESCCTHHHHHHHHTTCCCEEEEE--CEEGGGTEE---CHHHHHHHHHHSCSSCEEEEESSSCTTTCCCC-CHH
T ss_pred C-EEEEecCCchhHHHHHHHcCCeEEEeec--cccccccCC---CHHHHHHHHhccCCCcEEEEeCCCCCCCCCCC-CHH
Confidence 5 7788899985443333333322111000 000111122 77888888876666778888888899999999 999
Q ss_pred hHHHHHHHHHhcCcEEEEeccccCCcccCCc---ccc---ccCCC-Ccceeecccccc-CCCcceeEEEecHHHHhh---
Q 012138 246 YLKAVRDLCSKYNILMIADEIQSGLARSGRM---LAS---DWEEV-RPDMVILGKALG-GGVIPVSAVLADKEVMLC--- 314 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~g~g~~G~~---~~~---~~~~~-~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~--- 314 (470)
.+++|.++|+++++++|+||+|.+|.+.+.. +.. ...+. ..-+-+|||.++ .|+ |+|++++..+..+.
T Consensus 211 ~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RvG~~~~~~~~~~~~~~ 289 (420)
T 4h51_A 211 QWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSE-RAGTLSLLLKDKTKRAD 289 (420)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG-CEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccC-ceEEEEecccCHHHHHH
Confidence 9999999999999999999999998654321 111 11111 112349999998 798 99999875432222
Q ss_pred ----cCcCCccCCCCCCHHHHHHHHHHHHH------Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE
Q 012138 315 ----IQPGEHGSTFGGNPLASAVAIASLDV------IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382 (470)
Q Consensus 315 ----~~~~~~~~t~~~~~~~~aaa~a~l~~------~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~ 382 (470)
+.........+.+..++.++...+.. +++ +.++++++++++.+.+.|++++... .+..+..++.|+
T Consensus 290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~--~~~~i~~q~GmF 367 (420)
T 4h51_A 290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPG--SWEHVINQIGMF 367 (420)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS--CCTHHHHCCSSE
T ss_pred HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCeecCCCceE
Confidence 11111222333555566655555532 111 3456667777777777777654221 122223333444
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.+ +.. +. +.++.|+++||++.+++ ||++. ..++++|++++++|.++++ ++.+
T Consensus 368 ~~-~gl-----s~-e~v~~L~e~~Vy~~~~g----Ris~A-gl~~~ni~~~a~aI~~vvr-~i~r 419 (420)
T 4h51_A 368 SF-LGL-----SK-AQCEYCQNHNIFITVSG----RANMA-GLTHETALMLAQTINDAVR-NVNR 419 (420)
T ss_dssp EE-CCC-----CH-HHHHHHHHTTEECCTTC----EEEGG-GCCHHHHHHHHHHHHHHHC-----
T ss_pred Ee-cCc-----CH-HHHHHHHhCCEEEcCCC----EEEec-cCCHHHHHHHHHHHHHHHH-Hhhc
Confidence 44 222 22 34678889999988764 89854 4689999999999999999 7654
No 201
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.88 E-value=2.8e-21 Score=192.29 Aligned_cols=307 Identities=12% Similarity=0.127 Sum_probs=202.8
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~ 171 (470)
-+|++.+++.++++...+ +..+...++++.++++++.+.+++++||++|++.+++.++.+ ..++..+|+ .|++
T Consensus 13 ~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~--~~~~~~~g~-~Vi~ 85 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKMF----TMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFT--KKPRLKKGD-EIIV 85 (390)
T ss_dssp CCHHHHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSS--SSCSCCTTC-EEEE
T ss_pred CCHHHHHHHHHHHHcCCC----CCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhh--hhcCCCCcC-EEEE
Confidence 468999999999876432 234567899999999999889999999999999999876310 000112454 7888
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++||+........+... . +.+..++...+ |+++|++++++ ++++|++.+ +.|...+ +++|.
T Consensus 86 ~~~~~~~~~~~~~~~g~~~-~---~~~~~~~~~~~---d~~~l~~~i~~---~~~~v~~~~---~~g~~~~----~~~i~ 148 (390)
T 3b8x_A 86 PAVSWSTTYYPLQQYGLRV-K---FVDIDINTLNI---DIESLKEAVTD---STKAILTVN---LLGNPNN----FDEIN 148 (390)
T ss_dssp ESSSCHHHHHHHHHTTCEE-E---EECBCTTTCSB---CHHHHHHHCCT---TEEEEEEEC---GGGCCCC----HHHHH
T ss_pred CCCCcHHHHHHHHHcCCEE-E---EEecCccccCc---CHHHHHHHhCc---CCeEEEEEC---CccChhh----HHHHH
Confidence 9999877655433222211 1 11111111122 89999999875 788888642 3455566 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecccccc----CCCcceeEEEecH-HHHhhcCc---CC---
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILGKALG----GGVIPVSAVLADK-EVMLCIQP---GE--- 319 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~sK~l~----gG~~~ig~v~~~~-~~~~~~~~---~~--- 319 (470)
++|++||++||+||+|+ |.... ...++..+|+.+|||..+ +| ..|++++++ ++.+.++. ..
T Consensus 149 ~l~~~~~~~li~D~a~~~g~~~~-----~~~~g~~~~~~~~s~~~~k~~~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~ 221 (390)
T 3b8x_A 149 KIIGGRDIILLEDNCESMGATFN-----NKCAGTFGLMGTFSSFYSNHIATM--EGGCIVTDDEEIYHILLCIRAHGWTR 221 (390)
T ss_dssp HHHTTSCCEEEEECTTCTTCEET-----TEETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTBST
T ss_pred HHHHHcCCEEEEECcCcccCEEC-----CcccccccceEEEEccCCCCCccC--CceEEEeCCHHHHHHHHHHHhcCCCc
Confidence 99999999999999998 43222 234566678888876544 33 347788765 55543321 11
Q ss_pred -------------------------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 320 -------------------------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 320 -------------------------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
.+.++..+++.++++.+.++.++ ++.++.+++.+++.+.|+++ | .+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~----~-~~~~ 294 (390)
T 3b8x_A 222 NLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDH----P-YLDV 294 (390)
T ss_dssp TSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC----S-SEEE
T ss_pred cccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC----C-Cccc
Confidence 12233478888888888776664 46777788888888877653 2 2222
Q ss_pred Ee--cccee--EEEEeccCCCchhHHHHHHHHHHcCceeccC---C---C-----------------------CEEEEec
Q 012138 375 VR--GRGLF--NAVEFDKTALPVSAYDICLKMKERGILAKPT---H---D-----------------------TIVRLTP 421 (470)
Q Consensus 375 ~~--~~g~~--~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~---~-----------------------~~iR~~~ 421 (470)
.. ....+ +.+.+.... +.+..++.+.|.++||.+.+. . . +.+||++
T Consensus 295 ~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 373 (390)
T 3b8x_A 295 QQETGESSWFGFSFIIKKDS-GVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGN 373 (390)
T ss_dssp CCCCSBCCCCEEEEEECTTS-CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEEC
T ss_pred CCCCCCcccEEEEEEecCcC-cccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeC
Confidence 11 12333 344444210 125788999999999988752 1 1 2599999
Q ss_pred CCCCCHHHHHHHHHHH
Q 012138 422 PLSISSNELQEGSKAL 437 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l 437 (470)
...+|++|++++++.|
T Consensus 374 ~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 374 HQIELFDEIDYLREVL 389 (390)
T ss_dssp CSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999876
No 202
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.88 E-value=7.6e-22 Score=197.44 Aligned_cols=297 Identities=9% Similarity=-0.023 Sum_probs=190.0
Q ss_pred ccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 109 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
+.+..+.++...+++++++++.|.+.+++++||++|+..+++.+.+ +|+ .||+..+.|++..........
T Consensus 74 ~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~~---------~Gd-~Vi~~~~~y~~~~~~~~~~l~ 143 (415)
T 2fq6_A 74 LFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIE---------QGD-HVLMTNTAYEPSQDFCSKILS 143 (415)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC---------TTC-EEEEETTSCHHHHHHHHHTGG
T ss_pred ccccCCCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEeCCCchHHHHHHHHHHH
Confidence 3333445677899999999999988888889999999999886543 455 788888887764321111000
Q ss_pred CcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh--cCcEEEEecc
Q 012138 189 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK--YNILMIADEI 266 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~--~gillI~Dev 266 (470)
.. ...+..++.+|+++|++++++ ++++|+++.++||+|.+.| +++|.++|++ ||+++|+|++
T Consensus 144 ~~---------G~~v~~v~~~d~~~le~ai~~---~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a 207 (415)
T 2fq6_A 144 KL---------GVTTSWFDPLIGADIVKHLQP---NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNT 207 (415)
T ss_dssp GG---------TCEEEEECTTCGGGGGGGCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECT
T ss_pred Hc---------CcEEEEECCCCHHHHHHhhcc---CCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECC
Confidence 00 012355666799999998875 7999999999999999998 9999999999 9999999999
Q ss_pred ccCCcccCCccccccCCCCccee--eccccccC-CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh
Q 012138 267 QSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 343 (470)
Q Consensus 267 ~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~ 343 (470)
|+.. ...... + ++ .|++ +++|.+++ |...+|++++++++++.+...........++..++.+...++.+..
T Consensus 208 ~a~~-~~~~p~--~-~g--~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l~~ 281 (415)
T 2fq6_A 208 WAAG-VLFKAL--D-FG--IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGV 281 (415)
T ss_dssp TTTT-TSSCGG--G-GT--CSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred Cccc-ccCCcc--c-cC--CeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH
Confidence 9832 111111 1 23 4665 78899985 3214689999888777665432211223466666666666654432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh----hCCCceE---------EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec
Q 012138 344 EKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 410 (470)
Q Consensus 344 ~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 410 (470)
..++..++...+.+.|++... .+|.... ..++.|.++.+.+.......+...+.+.|...++.++
T Consensus 282 --r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s 359 (415)
T 2fq6_A 282 --RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYS 359 (415)
T ss_dssp --HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSC
T ss_pred --HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEecc
Confidence 334445555566665554310 0111000 0023577888887642000245555555542232221
Q ss_pred ------------c------------C-CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 411 ------------P------------T-HDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 411 ------------~------------~-~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
| + .++.|||++.+..++++|+.+.++|++
T Consensus 360 ~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 360 WGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp CCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 1 1 247899999998888888888888764
No 203
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.88 E-value=7.9e-21 Score=192.05 Aligned_cols=329 Identities=15% Similarity=0.143 Sum_probs=205.4
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~ 153 (470)
|+.+|.+... . -++++.+++.+++....++ +.+...++++.++++++.+.+++++||++|++.+++.+.
T Consensus 30 ~~~~i~~~~~----~---~~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~al~~l~ 98 (437)
T 3bb8_A 30 GKSVVPPSGK----V---IGTKELQLMVEASLDGWLT----TGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALT 98 (437)
T ss_dssp TTSCBCSCCC----C---CCHHHHHHHHHHHHHCCCB----SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT
T ss_pred CCccccCCCC----C---CCHHHHHHHHHHHHcCCcC----CChHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHHHHHhh
Confidence 5656665322 1 2589999999988764332 344578999999999998899999999999999998763
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccc
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI 233 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi 233 (470)
.+.+......+|+ .|++..++|++........+.... +.+..++...+ |+++|++++++ ++++|++..
T Consensus 99 ~~~~~~~~~~~gd-~Vi~~~~~~~~~~~~~~~~g~~~~----~v~~~~~~~~~---d~~~l~~~i~~---~~~~v~~~~- 166 (437)
T 3bb8_A 99 SPKLGVRALKPGD-EVITVAAGFPTTVNPTIQNGLIPV----FVDVDIPTYNV---NASLIEAAVSD---KTKAIMIAH- 166 (437)
T ss_dssp CGGGGGGSCCTTC-EEEECSSSCHHHHHHHHHTTCEEE----ECCEETTTTEE---CGGGHHHHCCT---TEEEEEEEC-
T ss_pred hcccccccCCCcC-EEEECCCCcHHHHHHHHHcCCEEE----EEeccCccCCc---CHHHHHHhcCC---CCeEEEEeC-
Confidence 1100000011454 788889998776544433222111 11111111122 78999998865 788888642
Q ss_pred cCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--ecc--ccccCCCcceeEEEec
Q 012138 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILG--KALGGGVIPVSAVLAD 308 (470)
Q Consensus 234 ~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~s--K~l~gG~~~ig~v~~~ 308 (470)
+.|...+ +++|.++|++||+++|+||+|+ |....+ ..++..+|++ +|+ |.+++| +.|+++++
T Consensus 167 --~~g~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~~d~~~~s~~~~k~l~~g--~gg~~~~~ 233 (437)
T 3bb8_A 167 --TLGNLFD----LAEVRRVADKYNLWLIEDCCDALGSTYDG-----KMAGTFGDIGTVSFYPAKHITMG--EGGAVFTQ 233 (437)
T ss_dssp --GGGCCCC----HHHHHHHHHHHTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECSTTSSSCCS--SCEEEEES
T ss_pred --CCCChhc----HHHHHHHHHHcCCEEEEECccccCceECC-----eecccccCEEEEECcCCcCCCCC--CeEEEEeC
Confidence 2344455 9999999999999999999998 443322 2233335774 543 556444 78899887
Q ss_pred HHHHh-h---cCcCC------------------------------------ccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 309 KEVML-C---IQPGE------------------------------------HGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 309 ~~~~~-~---~~~~~------------------------------------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
++.+. . ++... .+..+..+++.++++.++|+.+ ++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~--~~~~~ 311 (437)
T 3bb8_A 234 SAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERI--EEFVE 311 (437)
T ss_dssp CHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHH--HHHHH
T ss_pred CHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHH--HHHHH
Confidence 54332 2 11110 1112234688888888887765 34555
Q ss_pred HHHHHHHHHHHHHHHHHh--hCCCce-EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCC-----------
Q 012138 349 RSAHLGEELRQHLFKIQQ--QFPNYV-KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHD----------- 414 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~--~~p~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------- 414 (470)
+.+++.+++.+.|+++.. .+|... ....+... +.+.+.... +.+..++.+.|.++||.+.++..
T Consensus 312 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~ 389 (437)
T 3bb8_A 312 KRKANFKYLKDALQSCADFIELPEATENSDPSWFG-FPITLKEDS-GVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHD 389 (437)
T ss_dssp HHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSS-EEEEECGGG-SSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSS
T ss_pred HHHHHHHHHHHHhhccCCccccCCCCCCCceeeEE-EEEEECCcC-cCcHHHHHHHHHHCCCceeccCCcccccCchhhc
Confidence 667778888888776421 111000 00001111 233233210 12578899999999999875421
Q ss_pred -----------------CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 415 -----------------TIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 415 -----------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.+||++...+|++||++++++|+++++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 390 VKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp CCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred cCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 1499999999999999999999998876
No 204
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.88 E-value=1e-21 Score=197.15 Aligned_cols=280 Identities=18% Similarity=0.161 Sum_probs=183.7
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch---hcccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~ 190 (470)
+.++...+++++++++.|.+.+++++||++|+..+++.+.+ +|+ .|++..+.|++..... ....+
T Consensus 79 ~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~---------~Gd-~Vi~~~~~y~~~~~~~~~~~~~~G-- 146 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLAR---------AGD-SVVTTDRLFGHTLSLFQKTLPSFG-- 146 (430)
T ss_dssp -CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC---------TTC-EEEEETTCCHHHHHHHHTHHHHTT--
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEcCCCchhHHHHHHHHHHHcC--
Confidence 45677899999999999998899999999999999987754 455 7888899986644321 11111
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
..+..++.+|+++|++++++ ++++|++|.++||+|.+.+ +++|.++|++||++||+|++|+.
T Consensus 147 ----------~~~~~v~~~d~~~l~~ai~~---~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~- 208 (430)
T 3ri6_A 147 ----------IEVRFVDVMDSLAVEHACDE---TTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTP- 208 (430)
T ss_dssp ----------CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSC-
T ss_pred ----------CEEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-
Confidence 12456777799999999976 8999999988999999998 99999999999999999999972
Q ss_pred cccCCccccccCCCCcceeeccccccC-CCcceeEEEe---cHHH------------------HhhcCc-CCccCCCCCC
Q 012138 271 ARSGRMLASDWEEVRPDMVILGKALGG-GVIPVSAVLA---DKEV------------------MLCIQP-GEHGSTFGGN 327 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~sK~l~g-G~~~ig~v~~---~~~~------------------~~~~~~-~~~~~t~~~~ 327 (470)
+.......++.+..+.+++|.++| |. .+|.++. +..+ ++..+. .........+
T Consensus 209 ---~~~~~~~~~g~div~~S~sK~l~g~g~-~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~ 284 (430)
T 3ri6_A 209 ---PYLLEAKRLGVDIEVLSSTKFISGGGT-SVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLS 284 (430)
T ss_dssp ---TTTCCGGGGTCSEEEEECCCEEETTEE-ECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCC
T ss_pred ---cccCChHHcCCEEEEECCcccccCCCC-ceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCC
Confidence 222222334554445688899986 33 3444443 2111 111111 0011122357
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-----------------ccce-eEEEEeccC
Q 012138 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-----------------GRGL-FNAVEFDKT 389 (470)
Q Consensus 328 ~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-----------------~~g~-~~~~~~~~~ 389 (470)
+..++.+...++.+.. ..++..+++.++.+.|++ +| .+..+. +.|. ++++++...
T Consensus 285 ~~~a~l~l~~l~~l~~--r~~~~~~na~~la~~L~~----~p-~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~ 357 (430)
T 3ri6_A 285 PHNAYLQSLGLETMAL--RIERSCQNAQELAHWLLS----IP-QVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK 357 (430)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT----CT-TCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH
T ss_pred HHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHhC----CC-CccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH
Confidence 7777766666665532 334445556666665544 33 343332 2366 888988632
Q ss_pred CCchhHHHHHHHHHHcCceeccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 390 ALPVSAYDICLKMKERGILAKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 390 ~~~~~~~~~~~~l~~~Gv~~~~~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..+.+|.+.|+..++.++.+ .++.|||++. .|+++++++.|+++|
T Consensus 358 ---~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG----~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 358 ---EASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG----IEEIEDLKEDILQAL 429 (430)
T ss_dssp ---HHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC----SSCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHhh
Confidence 35677777776555443322 2578999954 466777777777766
No 205
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.87 E-value=7.4e-21 Score=186.93 Aligned_cols=316 Identities=13% Similarity=0.083 Sum_probs=200.2
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-ccCC-----C-C--CCCcHHHHHHHHhhhhCCC---eEEecCCh-h
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSR-----A-F--YNDKFPVFAERLTSMFGYD---MVLPMNTG-A 142 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~-----~-~--~~~~~~~l~~~l~~~~~~~---~v~~~~sG-t 142 (470)
+++++..+.. ..+|.+++++.+.++... .... . + ..+...++++++++++|.+ ++++++|+ +
T Consensus 3 ~~~~~~~g~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt 77 (360)
T 1w23_A 3 QVFNFNAGPS-----ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGAS 77 (360)
T ss_dssp CCEECCSSSC-----CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred ceEeecCCCc-----CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcch
Confidence 3455555522 267999999998875430 0000 0 1 1124678899999998764 79999888 9
Q ss_pred HHHHHHHHHHHHhchhcccCCCCC--cEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHH-HHH
Q 012138 143 EGVETALKLARKWGYVKKKFSIDE--AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK-IFK 219 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~--~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~-~l~ 219 (470)
+|++.++..+.. +++ ..|+....+|+. ...+ ...+ ... +.+..++.. +.|+++|++ +++
T Consensus 78 ~al~~~~~~l~~---------~~~~g~~vi~~~~~~~~-~~~~-~~~g-~~~---~v~~~~~~~---~~d~~~l~~~~i~ 139 (360)
T 1w23_A 78 LQFTMLPMNLLT---------KGTIGNYVLTGSWSEKA-LKEA-KLLG-ETH---IAASTKANS---YQSIPDFSEFQLN 139 (360)
T ss_dssp HHHHHHHHHHCC---------TTCEEEEEECSHHHHHH-HHHH-HTTS-EEE---EEEECGGGT---SCSCCCGGGCCCC
T ss_pred HHHHHHHHHhcC---------CCCcccEEEecchhHHH-HHHH-HHhC-CeE---EeecccccC---cCCccchHhhccC
Confidence 999999886643 222 234444444322 1111 1112 111 011100000 126777777 664
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG 297 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~g 297 (470)
. ++++|++++++||+|.+++ +++++||++||+||+|+.+... .....+ |++ +++|.+++
T Consensus 140 ~---~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~ 200 (360)
T 1w23_A 140 E---NDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGP 200 (360)
T ss_dssp T---TEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSC
T ss_pred C---CCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCC
Confidence 3 7899987777999999984 2334899999999999844322 112222 554 67798873
Q ss_pred CCcceeEEEecHHHHhhcCcCC-----------ccCCC-CCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q 012138 298 GVIPVSAVLADKEVMLCIQPGE-----------HGSTF-GGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~-----------~~~t~-~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L 361 (470)
. ++|++++++++++.+.... .+.++ +.+..+++++.++++.+.+ +.+.++.+++++++.+.|
T Consensus 201 -~-G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L 278 (360)
T 1w23_A 201 -S-GVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTI 278 (360)
T ss_dssp -T-TCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -C-CcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 2 6899999999888775432 11222 3567777777788887654 346677777788887777
Q ss_pred HHHHhhCCCceEEE--e-cc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHH
Q 012138 362 FKIQQQFPNYVKEV--R-GR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 362 ~~l~~~~p~~~~~~--~-~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
+++. ..+... . .. +.++++.+... .+..++.+.|.++||.+.++. .+++|++++..+++++++++++
T Consensus 279 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~ 351 (360)
T 1w23_A 279 DESN----GFYVGHAEKGSRSLMNVTFNLRNE---ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRE 351 (360)
T ss_dssp HTTT----TSSEESSCGGGBCSSEEEEECSSH---HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHH
T ss_pred HHcc----CcccccCCchhccCcEEEEEcCCC---ccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHH
Confidence 6642 111221 1 12 33666655421 256788999999999998764 5789999988889999999999
Q ss_pred HHHHHHh
Q 012138 436 ALHDVLE 442 (470)
Q Consensus 436 ~l~~~l~ 442 (470)
+|+++++
T Consensus 352 ~l~~~~~ 358 (360)
T 1w23_A 352 LMIQFKE 358 (360)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999886
No 206
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.87 E-value=7.3e-21 Score=188.34 Aligned_cols=310 Identities=16% Similarity=0.149 Sum_probs=201.0
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHH-hhhhC-CCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERL-TSMFG-YDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~-~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ 168 (470)
.++++.+++.+.++...+++ +.+...++++.+ ++++| .+++++++||++|+..+++.+ .. +|+ .
T Consensus 14 ~~~~i~~a~~~~~~~~~~~~---~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~---------~Gd-~ 80 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYTN---YGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRK---------KGK-Y 80 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCSS---SCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCT---------TCC-E
T ss_pred CcHHHHHHHHHHHHcCCccc---CCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCC---------CcC-E
Confidence 56788999999987754321 234578999999 99999 889999999999999999876 33 465 7
Q ss_pred EEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHH
Q 012138 169 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 169 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
||+..++|.+.... +...+.... +.+..++...+ |+++|++++.....++++|+ + .|++|.+.+ ++
T Consensus 81 Vi~~~~~~~~~~~~-~~~~G~~~~---~v~~~~~~~~~---d~~~l~~~i~~~~~~tk~v~--~-~~~~G~~~~----~~ 146 (377)
T 3ju7_A 81 ALMPSFTFPATPLA-AIWCGLEPY---FIDISIDDWYM---DKTVLWDKIEELKEEVAIVV--P-YATFGSWMN----LE 146 (377)
T ss_dssp EEEESSSCTHHHHH-HHHTTCEEE---EECBCTTTCSB---CHHHHHHHHHHHGGGEEEEC--C-BCGGGBCCC----CH
T ss_pred EEECCCCcHHHHHH-HHHcCCEEE---EEecCCccCCc---CHHHHHHHHhcCCCCceEEE--E-ECCCCCccC----HH
Confidence 88888887554332 222221111 11111111222 89999999843211288887 3 668899987 99
Q ss_pred HHHHHHHhcCcEEEEecccc-CCcccCCccccccC-CCCccee--ecc--ccccCCCcceeEEEe-cHHHHhhcCcCC--
Q 012138 249 AVRDLCSKYNILMIADEIQS-GLARSGRMLASDWE-EVRPDMV--ILG--KALGGGVIPVSAVLA-DKEVMLCIQPGE-- 319 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~-~~~pdi~--s~s--K~l~gG~~~ig~v~~-~~~~~~~~~~~~-- 319 (470)
+|.++|+ ||++||+|++|+ |....+. .. +...|+. ||+ |.+++| ..|+++. ++++.+.++...
T Consensus 147 ~i~~la~-~~~~vi~D~a~a~g~~~~~~-----~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~~~~~~~~ 218 (377)
T 3ju7_A 147 EYEELEK-KGVPVVVDAAPGFGLMNGGM-----HYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQRIKRMGNF 218 (377)
T ss_dssp HHHHHHH-TTCCBEEECTTCTTCEETTE-----ETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHTBT
T ss_pred HHHHHHh-cCCEEEEECCCccCCeECCE-----eccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHHHHHHHhc
Confidence 9999999 999999999998 2111121 12 1112444 443 888875 5566664 566665543221
Q ss_pred ----------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh-CCCceEE-E-eccceeEEEEe
Q 012138 320 ----------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ-FPNYVKE-V-RGRGLFNAVEF 386 (470)
Q Consensus 320 ----------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-~p~~~~~-~-~~~g~~~~~~~ 386 (470)
.+..+..+++.++.+.+.++.+ +.+.++.+++.+++.+.|.++... .+ .... . .....++.+.+
T Consensus 219 g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 295 (377)
T 3ju7_A 219 GFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKG-WQLQKTEAVIQQFMPILC 295 (377)
T ss_dssp TBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTT-CBCCCCSCBCCSSEEEEC
T ss_pred CCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCcccc-ccCCCCCcceEEEEEEEe
Confidence 1335567888888887777655 346677778888888888775321 11 1100 0 11112334433
Q ss_pred ccCCCchhHHHHHHHHHHcCceeccCC-------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 387 DKTALPVSAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+.. .+.+++.+.|.++||.+.... .+.+||.....+|++|++++++.|.+++
T Consensus 296 ~~~---~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 296 PEE---VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp CTT---SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC--
T ss_pred CCh---hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 322 147899999999999875321 3568998888899999999999998887
Q ss_pred h
Q 012138 442 E 442 (470)
Q Consensus 442 ~ 442 (470)
.
T Consensus 373 ~ 373 (377)
T 3ju7_A 373 V 373 (377)
T ss_dssp -
T ss_pred h
Confidence 6
No 207
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.87 E-value=2.5e-20 Score=191.41 Aligned_cols=337 Identities=12% Similarity=0.022 Sum_probs=207.3
Q ss_pred CCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCCC-------eEEecCChhHHHHHHHHHHHHhchhc---
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD-------MVLPMNTGAEGVETALKLARKWGYVK--- 159 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~-------~v~~~~sGteA~~~al~~~~~~~~~~--- 159 (470)
.+|.+.+++.+.+.........+ ..++..++.+++++++|.+ ..++++||++|+..++.+++......
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 57889998888775533222111 1233456777888888876 34579999999999988775421110
Q ss_pred ccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcc
Q 012138 160 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 239 (470)
Q Consensus 160 ~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~ 239 (470)
.|.+.++..|++..++ |.....+....+..... .+..++...+ |+++|++++++ ++++|++...+|++|.
T Consensus 148 ~G~~~~~~~vi~~~~~-h~s~~~~~~~~G~~~~~---v~~~~~~~~~---d~~~l~~~i~~---~t~~v~~~~~~n~tG~ 217 (502)
T 3hbx_A 148 EGKPVDKPNIVTGANV-QVCWEKFARYFEVELKE---VKLSEGYYVM---DPQQAVDMVDE---NTICVAAILGSTLNGE 217 (502)
T ss_dssp TTCCCSCCEEEEETTC-CHHHHHHHHHTTCEEEE---ECCBTTBCSC---CHHHHHHHCCT---TEEEEEEEBSCTTTCC
T ss_pred cCCCCCCcEEEEcCCc-hHHHHHHHHHcCceeEE---EecCCCcCcC---CHHHHHHHHhh---CCEEEEEecCCCCCCc
Confidence 1211223367777766 44433333333321111 1111111122 89999999876 7888886666999999
Q ss_pred ccCChhhHHHHHHHHHhc------CcEEEEeccccCCcc---cCCc-cccccCCCCccee--eccccccCCCcceeEEEe
Q 012138 240 IIPPDGYLKAVRDLCSKY------NILMIADEIQSGLAR---SGRM-LASDWEEVRPDMV--ILGKALGGGVIPVSAVLA 307 (470)
Q Consensus 240 ~~~~~~~l~~l~~l~~~~------gillI~Dev~~g~g~---~G~~-~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~ 307 (470)
+.| +++|.++|++| |++|++|++|+++.. .+.. +.+... ..|++ +..|.+.++. ++|+++.
T Consensus 218 ~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~--~~D~v~~s~hK~l~~p~-g~G~~~~ 290 (502)
T 3hbx_A 218 FED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLP--LVKSINVSGHKYGLVYA-GIGWVIW 290 (502)
T ss_dssp BCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST--TEEEEEEETTTTTCCCS-SCEEEEE
T ss_pred ccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCC--CceEEEECcccccCCCC-CeEEEEE
Confidence 998 99999999999 999999999986531 1111 112211 23655 4447776776 8898876
Q ss_pred c-HHHH-hhcC--cCCccC-------CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 308 D-KEVM-LCIQ--PGEHGS-------TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 308 ~-~~~~-~~~~--~~~~~~-------t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+ ++.+ +.+. +...+. .++.+....++..++++.+.. ....++..++++++.+.|+++. .+.
T Consensus 291 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~-----~~~ 365 (502)
T 3hbx_A 291 RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTE-----RFN 365 (502)
T ss_dssp SSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----CEE
T ss_pred eCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CEE
Confidence 5 3333 2221 111111 123333344555555665544 3455666677777777776642 233
Q ss_pred EEe--ccceeEEEEeccCCCchhHHHHHHHHHHcCceecc----C---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 374 EVR--GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP----T---HDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 374 ~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~----~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
.+. +...++.+.+.... ..+..++.+.|.++|+++.. . +..++|+++...+|+++++.+++.|+++++ +
T Consensus 366 ~~~~~~~~~~v~f~~~~~~-~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~-~ 443 (502)
T 3hbx_A 366 IVSKDEGVPLVAFSLKDSS-CHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMR-E 443 (502)
T ss_dssp ECSCSSSSSEEEEEESSCS-SCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-H
T ss_pred EEeCCCCceEEEEEecCCC-cCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH-H
Confidence 332 25567777665421 13566899999999998642 1 246899999999999999999999999998 8
Q ss_pred cCCCCCCC
Q 012138 445 LPKMRKPK 452 (470)
Q Consensus 445 ~~~~~~~~ 452 (470)
+++.....
T Consensus 444 l~~~~~~~ 451 (502)
T 3hbx_A 444 LDELPSRV 451 (502)
T ss_dssp HHTCC---
T ss_pred HHhCcccc
Confidence 77655433
No 208
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.87 E-value=5.7e-20 Score=186.56 Aligned_cols=335 Identities=11% Similarity=-0.008 Sum_probs=205.3
Q ss_pred CCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCCC-------eEEecCChhHHHHHHHHHHHHhchh---c
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD-------MVLPMNTGAEGVETALKLARKWGYV---K 159 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~-------~v~~~~sGteA~~~al~~~~~~~~~---~ 159 (470)
.+|.+.+++.+.++........+ ...+..++.+++++++|.+ .+++|+||++|+..++..++..... .
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 56888888887775432221111 1233567788888888754 3899999999999999887642110 0
Q ss_pred ccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcc
Q 012138 160 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 239 (470)
Q Consensus 160 ~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~ 239 (470)
+|.+..+..|++.. .|.....+....+-... +.+..++...+ |+++|++++++ ++++|++...+|++|.
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v~---~v~~~~~~~~~---d~~~l~~~i~~---~t~~v~~~~~~n~tG~ 202 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYWDVELR---EIPMRPGQLFM---DPKRMIEACDE---NTIGVVPTFGVTYTGN 202 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHTTCEEE---ECCCBTTBCSC---CHHHHHHHCCT---TEEEEECBBSCTTTCB
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHcCceEE---EEecCCCCCeE---CHHHHHHHHhh---CCEEEEEEcCCcCCcc
Confidence 11110123666655 46554444333332111 11111111222 89999999976 7888887766999999
Q ss_pred ccCChhhHHHHHHHHHhc------CcEEEEeccccCCcc---cCCc-cccccCCCCcceeec--cccccCCCcceeEEEe
Q 012138 240 IIPPDGYLKAVRDLCSKY------NILMIADEIQSGLAR---SGRM-LASDWEEVRPDMVIL--GKALGGGVIPVSAVLA 307 (470)
Q Consensus 240 ~~~~~~~l~~l~~l~~~~------gillI~Dev~~g~g~---~G~~-~~~~~~~~~pdi~s~--sK~l~gG~~~ig~v~~ 307 (470)
+.| +++|.++|++| |+++++|++|.++.. .+.. +.+... ..|.+++ .|.+.+|+ ++|++++
T Consensus 203 ~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~hK~~~~~~-~~G~~~~ 275 (452)
T 2dgk_A 203 YEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLP--RVKSISASGHKFGLAPL-GCGWVIW 275 (452)
T ss_dssp BCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST--TEEEEEEETTTTTCCCS-SCEEEEE
T ss_pred cCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCC--CCcEEEECcccccCCCC-CeEEEEE
Confidence 998 99999999996 999999999997532 1111 111111 2465554 48666777 9999998
Q ss_pred cHH-HH-hhcC--cCCccC-------CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 308 DKE-VM-LCIQ--PGEHGS-------TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 308 ~~~-~~-~~~~--~~~~~~-------t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+++ +. +.+. +...+. .++.+.....+..++++.+.. +++.++..++++++.+.|+++ | .+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~-~~~ 350 (452)
T 2dgk_A 276 RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL----G-PYE 350 (452)
T ss_dssp SSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S-SEE
T ss_pred cCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----C-CeE
Confidence 643 32 3332 111110 112222233334444554433 345666667777777777664 1 233
Q ss_pred EEe-----ccceeEEEEeccCCC-chhHHHHHHHHHHcCceec----cC---CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 374 EVR-----GRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAK----PT---HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 374 ~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~----~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.+. +...++.+.+..... ..+..++.+.|.++|+.+. |. +..++|+++...+|+++++++++.|+++
T Consensus 351 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~ 430 (452)
T 2dgk_A 351 FICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKAS 430 (452)
T ss_dssp EEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 332 355677776653210 1245789999999999654 22 2458999998888999999999999999
Q ss_pred HhcccCCCCC
Q 012138 441 LELDLPKMRK 450 (470)
Q Consensus 441 l~~~~~~~~~ 450 (470)
++ ++++...
T Consensus 431 ~~-~~~~~~~ 439 (452)
T 2dgk_A 431 LK-YLSDHPK 439 (452)
T ss_dssp HH-HHHHCGG
T ss_pred HH-HHHhCCC
Confidence 98 7765433
No 209
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.86 E-value=1.1e-19 Score=187.04 Aligned_cols=306 Identities=13% Similarity=0.060 Sum_probs=188.8
Q ss_pred HHHHHHHHhhhhCCC----eEEecCChhHHHHHHHHHHHHhchh---cccCCCC-CcEEEEEccCccccccchhcccCCc
Q 012138 119 FPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYV---KKKFSID-EAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~----~v~~~~sGteA~~~al~~~~~~~~~---~~~~~~g-~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
..++.+++++++|.+ .++|++||++|+..+++.++.+.+. .+|.... +..|++.... |.+...+....+..
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~-h~s~~~~~~~~g~g 212 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS-HYSIKKAGAALGFG 212 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcc-hHHHHHHHHHcCCC
Confidence 445667788888754 6999999999999999988753110 1111001 3255555555 55544433332211
Q ss_pred ccccCCCCCCCCeeeecCC-----CHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEE
Q 012138 191 EAIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI 262 (470)
. ..+..+|.+ |+++|++++++. +.++++|+++..+|++|.+.| +++|.++|++||++++
T Consensus 213 -~--------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~~lh 279 (504)
T 2okj_A 213 -T--------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLH 279 (504)
T ss_dssp -G--------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTCEEE
T ss_pred -c--------ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEE
Confidence 0 012233332 899999999762 225788888777999999998 9999999999999999
Q ss_pred EeccccCCcccCCccccccCCC-Ccceeecc--ccccCCCcceeEEEecH-HHHhh-c---CcCCcc-CC----------
Q 012138 263 ADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADK-EVMLC-I---QPGEHG-ST---------- 323 (470)
Q Consensus 263 ~Dev~~g~g~~G~~~~~~~~~~-~pdi~s~s--K~l~gG~~~ig~v~~~~-~~~~~-~---~~~~~~-~t---------- 323 (470)
+|++|+++......+.....++ .+|+++++ |.+++++ ++|++++++ ++++. + .+...+ ..
T Consensus 280 vD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~-~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 358 (504)
T 2okj_A 280 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL-QCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGD 358 (504)
T ss_dssp EEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGG
T ss_pred EehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCc-ceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCccc
Confidence 9999997543322221222233 46877665 9888776 999999875 45542 1 111111 11
Q ss_pred ------CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE---eccceeEEEEeccCC----
Q 012138 324 ------FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV---RGRGLFNAVEFDKTA---- 390 (470)
Q Consensus 324 ------~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~---~~~g~~~~~~~~~~~---- 390 (470)
.....+.+.+++.++..-.-+++.++..++++++.+.|+++ | .+..+ .+...++.+......
T Consensus 359 ~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~-~~~~~~~~~p~~~~v~f~~~~~~~~~~ 433 (504)
T 2okj_A 359 KAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----E-EFEMVFNGEPEHTNVCFWYIPQSLRGV 433 (504)
T ss_dssp GSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----T-TEEESSSSCCSSSCEEEEECCGGGSSC
T ss_pred CCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----C-CEEEEecCCCCeEEEEEEEeCcccccc
Confidence 01235555555554432111345666777777777777653 2 23332 244555555442210
Q ss_pred -C--------chhHHHHHHHHHHcCce-eccC---C-CCEEEEecC-CCCCHHHHHHHHHHHHHHHhccc
Q 012138 391 -L--------PVSAYDICLKMKERGIL-AKPT---H-DTIVRLTPP-LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 391 -~--------~~~~~~~~~~l~~~Gv~-~~~~---~-~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
. .....++.+.|.++|++ +.+. + .+++|+++. ..+|+++|++++++|+++++ ++
T Consensus 434 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~-~~ 502 (504)
T 2okj_A 434 PDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ-DL 502 (504)
T ss_dssp CCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHT-C-
T ss_pred ccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 0 00145788899999964 3321 2 258999985 77999999999999999987 64
No 210
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.86 E-value=1.8e-21 Score=193.91 Aligned_cols=269 Identities=12% Similarity=0.091 Sum_probs=171.7
Q ss_pred HHHHHHHhhhhC-------C-CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCc---EEEEEccCccccccchhcccC
Q 012138 120 PVFAERLTSMFG-------Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA---IIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 120 ~~l~~~l~~~~~-------~-~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~---~ii~~~~~yhg~~~~~~~~~~ 188 (470)
.++.+.++++++ . ++|++|+|+++|+..+++.+.. +|+. .|++..|+|.+..........
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~---------~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~ 141 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS---------LARSQPVSVVAAAPFYSTYVEETTYVRS 141 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH---------TSSSSSEEEEECSSCCTHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC---------CCCCCcceEEEcCCCchhHHHHHHHcCC
Confidence 566666665543 3 5899999999999999998865 4541 788899998654433322221
Q ss_pred CcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC--cEEEEecc
Q 012138 189 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEI 266 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g--illI~Dev 266 (470)
. +..++. |.+.++ . .++++|++..++||||.++ + +|.+ ++|+ ++||+||+
T Consensus 142 ~-------------~~~~~~-d~~~l~----~--~~~k~v~l~~p~NPtG~~~-~-----~l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 142 G-------------MYKWEG-DAWGFD----K--KGPYIELVTSPNNPDGTIR-E-----TVVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp T-------------TEEEEE-ESTTCC----C--CSCEEEEEESSCTTTCCCC-C-----CCC-------CCCEEEEECT
T ss_pred e-------------EEEecC-CHHHcC----C--CCCEEEEECCCCCCCchhH-H-----HHHH--HhhcCCCEEEEeCC
Confidence 1 112221 223332 1 2678887555599999999 4 2333 2256 99999999
Q ss_pred ccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--
Q 012138 267 QSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-- 342 (470)
Q Consensus 267 ~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-- 342 (470)
|.. +. ...+.. ..+....+.||||.++ +|+ |+||+++ ++++++.+.......+++.+.+++.++.++|+...
T Consensus 194 y~~-~~-~~~l~~-~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~ 269 (391)
T 3bwn_A 194 YYW-PH-YTPITR-RQDHDIMLFTFSKITGHAGS-RIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKET 269 (391)
T ss_dssp TCS-TT-TSCCCC-CBCCSEEEEEHHHHHSCGGG-CEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCC-CC-CCcccc-CCCCeEEEEechhhcCCCcc-ceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchh
Confidence 973 11 111111 1222233459999998 898 9999997 88998887654433356678898888888887532
Q ss_pred -------h---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE--------------EeccceeEEEEeccCCCchhHHHH
Q 012138 343 -------D---EKLAERSAHLGEELRQHLFKIQQQFPNYVKE--------------VRGRGLFNAVEFDKTALPVSAYDI 398 (470)
Q Consensus 343 -------~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~--------------~~~~g~~~~~~~~~~~~~~~~~~~ 398 (470)
+ +.+++.++++.+.+.+.|+++ | .+.. .+..|.++++.+... ..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------~~~ 338 (391)
T 3bwn_A 270 CKSESESENFFKYGREMMKNRWEKLREVVKES----D-AFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------TDL 338 (391)
T ss_dssp TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC----S-SEECCCCCCEEETTTTEEECCCCSEEEEEESSS------CCH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhC----C-CcccccCCccccccccccCCCcceEEEecCCcH------HHH
Confidence 1 345566666777777766653 1 1211 123344566665421 245
Q ss_pred HHHHHHcCceeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 399 CLKMKERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 399 ~~~l~~~Gv~~~~~~-----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+.|.++||.+.|+. .+++||++. .+++++++++++|.++++
T Consensus 339 ~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 339 VSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp HHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred HHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 667788899998752 679999954 589999999999998876
No 211
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.86 E-value=5e-21 Score=193.76 Aligned_cols=283 Identities=13% Similarity=0.017 Sum_probs=186.9
Q ss_pred CCcHHHHHHHHhhhhCCC-eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 116 NDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~-~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
.....++++++++ ++.+ .+++++|+++|+..+++++.. +|+ .|++..++|++........+....+
T Consensus 56 ~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~---------~gd-~Vlv~~~~h~s~~~~~~~~G~~~~~-- 122 (446)
T 2x3l_A 56 EEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQ---------KKG-DILMARNVHKSVLHALDISQQEGHF-- 122 (446)
T ss_dssp SSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTT---------SSS-CEEECTTCCHHHHHHHHHHTCCEEE--
T ss_pred chHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcC---------CCC-EEEEecCccHHHHHHHHHcCCeEEE--
Confidence 4556788999999 8865 588999999999999997743 454 7888888866544433332222211
Q ss_pred CCCCC--CCC---eeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 195 GFGPL--LPG---HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 195 ~~~~~--~~~---~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
.+. ..+ ...+ |+++| +. +++++|++++ .|++|.+.| +++|.++|++||++||+||+|++
T Consensus 123 --v~~~~~~~~~~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~ 186 (446)
T 2x3l_A 123 --IETHQSPLTNHYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGA 186 (446)
T ss_dssp --CEEEECTTTSSEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCT
T ss_pred --EeCeeccccCcCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhh
Confidence 111 000 0222 45655 22 2678888877 777999998 99999999999999999999986
Q ss_pred -CcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHh--hcCcC-CccCCCCCCHHHHHHHHHHHHHHhh
Q 012138 270 -LARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVML--CIQPG-EHGSTFGGNPLASAVAIASLDVIRD 343 (470)
Q Consensus 270 -~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~--~~~~~-~~~~t~~~~~~~~aaa~a~l~~~~~ 343 (470)
+.+.+..+..... .+|++ +++|.++++. ++|++++++++++ .+... ....+.+.+...+++..++++.+++
T Consensus 187 ~~~f~~~~~~~~~~--g~Di~~~S~~K~l~~~~-g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~ 263 (446)
T 2x3l_A 187 HFGLQGFPDSTLNY--QADYVVQSFHKTLPALT-MGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKT 263 (446)
T ss_dssp TTTSTTSCCCGGGG--TCSEEEECHHHHSSSCT-TCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCChHHc--CCCEEEECCcccccccc-ccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 3333322222222 35776 4559888776 8899999877654 22211 1223445677777777777777765
Q ss_pred h---hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec-cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEE
Q 012138 344 E---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRL 419 (470)
Q Consensus 344 ~---~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~ 419 (470)
. ++.++.+++.+++++. . +..... .+..+++.+. . .+..++.+.|+++||.+...+.+++|+
T Consensus 264 ~g~~~~~~~~~~l~~~l~~~------g----~~~~~~~~~~~l~i~~~-~---~~~~~l~~~L~~~GI~v~~~g~~~iRi 329 (446)
T 2x3l_A 264 YDSTLFFAKRAQLIECLENK------G----FEMLQVDDPLKLLIKYE-G---FTGHDIQNWFMNAHIYLELADDYQALA 329 (446)
T ss_dssp CCCHHHHHHHHHHHHHHHHH------T----CEEEECSSTTEEEEECT-T---SCHHHHHHHHHHTTEEESEECSSCEEE
T ss_pred hCHHHHHHHHHHHHHHHHHc------C----CEECcCCCCeEEEEEeC-C---cCHHHHHHHHHHCCCEEEecCCCEEEE
Confidence 2 2667777776666654 1 222222 2345555443 2 367889999999999997344678999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 420 TPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 420 ~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+++..+|++++ +++++|.++++ ++.
T Consensus 330 ~~~~~~t~e~i-~l~~aL~~~~~-~~~ 354 (446)
T 2x3l_A 330 ILPLWHHDDTY-LFDSLLRKIED-MIL 354 (446)
T ss_dssp ECCCCCTTCCC-CHHHHHHHHHT-CCC
T ss_pred EeecCCCHHHH-HHHHHHHHHHH-hhc
Confidence 99988899999 99999999998 774
No 212
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.86 E-value=1.3e-20 Score=192.53 Aligned_cols=316 Identities=14% Similarity=0.093 Sum_probs=196.5
Q ss_pred CCHHHHHHHHHHHHHcc---ccCCCCCC------CcHHHHHHHHhhhhCCCe-----EEecCChhHHHHHHHHHHHHhch
Q 012138 92 CHPKIMKALQEQAEKLT---LSSRAFYN------DKFPVFAERLTSMFGYDM-----VLPMNTGAEGVETALKLARKWGY 157 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~---~~~~~~~~------~~~~~l~~~l~~~~~~~~-----v~~~~sGteA~~~al~~~~~~~~ 157 (470)
.+|.|.+++.+.+.+.. +....++. .....+.+++++++|.+. .+.+++|++|+..++..+..
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~--- 132 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVE--- 132 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcC---
Confidence 57999999988876421 11111111 123345588888888652 25556677999888877654
Q ss_pred hcccCCCCCcEEEEEccCccccccchh-------cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEE
Q 012138 158 VKKKFSIDEAIIVSCCGCFHGRTLAAI-------SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 158 ~~~~~~~g~~~ii~~~~~yhg~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
+|+ .|++.++.|.+...... ...+.. ......+..++...+ |+++|++++++. ++++|++
T Consensus 133 ------pGD-~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~-~~~v~~~~~~~~~~i---D~d~le~~i~~~--~tklIi~ 199 (483)
T 1rv3_A 133 ------PHG-RIMGLDLPDGGHLTHGFMTDKKKISATSIF-FESMAYKVNPDTGYI---DYDRLEENARLF--HPKLIIA 199 (483)
T ss_dssp ------TTC-EEEEECGGGTCCGGGCCBCSSCBCSHHHHH-SEEEEECBCTTTCSB---CHHHHHHHHHHH--CCSEEEE
T ss_pred ------CCC-EEEEecCccCcCcchhhhhcccCcccccce-EEEEECccccCCCcC---CHHHHHHHHhhc--CCcEEEE
Confidence 566 77888777544322111 100000 000000001111222 899999999843 7888888
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCc-cccccCCCCccee--eccccccCCCcceeEEE
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRM-LASDWEEVRPDMV--ILGKALGGGVIPVSAVL 306 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~-~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~ 306 (470)
..+|++ .+.| +++|.++|++||++||+|++|. |+...|.. ..+. ..|++ +++|+++ |. +.|+++
T Consensus 200 -~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~K~l~-Gp-rgG~i~ 267 (483)
T 1rv3_A 200 -GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLR-GC-RAGMIF 267 (483)
T ss_dssp -CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGC-CC-SCEEEE
T ss_pred -eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCcccCC-CC-CceEEE
Confidence 557877 8887 9999999999999999999987 54333321 1111 23665 5669986 44 779999
Q ss_pred ecHH---------------HHhhcCcCCccC-CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 307 ADKE---------------VMLCIQPGEHGS-TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 307 ~~~~---------------~~~~~~~~~~~~-t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
++++ +.+.+....... ..+.+...+++..++++.+.+ +.+.++++++++++.+.|.+++
T Consensus 268 ~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-- 345 (483)
T 1rv3_A 268 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELG-- 345 (483)
T ss_dssp EECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred EcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 8874 222222111111 223455566666667776643 4567778888888888887752
Q ss_pred CCCceEEEec-cc-eeEEEEeccCCCchhHHHHHHHHHHcCceec----cCC-----CCEEEEecCCCCC----HHHHHH
Q 012138 368 FPNYVKEVRG-RG-LFNAVEFDKTALPVSAYDICLKMKERGILAK----PTH-----DTIVRLTPPLSIS----SNELQE 432 (470)
Q Consensus 368 ~p~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~~-----~~~iR~~~~~~~t----~e~i~~ 432 (470)
+..+.+ .+ .+.++.+... +.+..++.+.|.+.||.+. |+. .+.+||+++..+| ++|+++
T Consensus 346 ----~~~~~~~~~~~~~~v~~~~~--g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~ 419 (483)
T 1rv3_A 346 ----YKIVTGGSDNHLILVDLRSK--GTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQK 419 (483)
T ss_dssp ----CEEGGGSCSSSEEEEEGGGG--TCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHH
T ss_pred ----CEeccCCCCCceEEEeccCC--CCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHH
Confidence 222222 12 3445544322 1356778888988999988 653 5789999876556 999999
Q ss_pred HHHHHHHHHhcc
Q 012138 433 GSKALHDVLELD 444 (470)
Q Consensus 433 ~~~~l~~~l~~~ 444 (470)
++++|.++++ .
T Consensus 420 ~~~~l~~~l~-~ 430 (483)
T 1rv3_A 420 VAHFIHRGIE-L 430 (483)
T ss_dssp HHHHHHHHHH-H
T ss_pred HHHHHHHHHH-h
Confidence 9999999998 5
No 213
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.85 E-value=4.6e-20 Score=187.35 Aligned_cols=292 Identities=14% Similarity=0.111 Sum_probs=184.6
Q ss_pred HHHHHHHHhhhhCCCe-EEecCChh-HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 119 FPVFAERLTSMFGYDM-VLPMNTGA-EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~-v~~~~sGt-eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
.+++++++++++|.+. +++|+||+ .++..++..++.+. +++.||+..+. |......+...+-....
T Consensus 135 ~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~--------~~~~vi~~~~~-h~s~~~~~~~~G~~~~~--- 202 (456)
T 2z67_A 135 TNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY--------GSNVVIYPYAS-HKSPIKAVSFVGMNMRL--- 202 (456)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH--------CCCEEEEECCC-CHHHHHHHHHTTCEEEE---
T ss_pred HHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhc--------CCCEEEEECCC-cHHHHHHHHHcCCCceE---
Confidence 4568888999988653 89999999 56666777655421 33467777776 44444443333321111
Q ss_pred CCCC--CCeeeecCCCHHHHHHHH-Hhc-CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 197 GPLL--PGHLKVDFGDITALEKIF-KES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 197 ~~~~--~~~~~~~~~d~~~Le~~l-~~~-~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
.+.. .+...+ |+++|++++ ++. ..++.+|++...+|++|.+.| +++|.++|++||+++++||+|+++..
T Consensus 203 v~~~~~~~~~~~---d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~ 275 (456)
T 2z67_A 203 VETVLDGDRVYV---PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNN 275 (456)
T ss_dssp ECCEEETTEEEC---CHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred EEEeccCCCCCc---CHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHH
Confidence 1110 011223 899999999 421 126777765555899999998 99999999999999999999986532
Q ss_pred cCCc-ccccc-CCCCccee--eccccccCCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---h
Q 012138 273 SGRM-LASDW-EEVRPDMV--ILGKALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---E 344 (470)
Q Consensus 273 ~G~~-~~~~~-~~~~pdi~--s~sK~l~gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~ 344 (470)
|.. ..... .+ .+|++ +++|.+.++. ++|++++ ++++++.+.+...+... .++ ..++.+++..+.. +
T Consensus 276 -g~~~~~~~~~~~-~~D~~~~s~hK~~~~p~-g~G~l~~~~~~~~~~l~~~~~g~~~-~~~--~~~~~aal~~l~~~~~~ 349 (456)
T 2z67_A 276 -YYLEKLKKAFKY-RVDAVVSSSDKNLLTPI-GGGLVYSTDAEFIKEISLSYPGRAS-ATP--VVNTLVSLLSMGSKNYL 349 (456)
T ss_dssp -HHHHHHHHHHTS-CCSEEEEEHHHHHCCCS-SCEEEEESCHHHHHHHHTTSCSCBC-SHH--HHHHHHHHHHHHHHHHH
T ss_pred -HhhHHHHHhhCC-CCCEEEEcCCCCcCCCC-CeEEEEEcCHHHHhhcCcCCCCCCC-CCH--HHHHHHHHHHHHHHHHH
Confidence 110 10111 11 45766 4569877777 9999999 57777776543333221 222 3333444444433 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCc---eec-----------
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI---LAK----------- 410 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~~~----------- 410 (470)
++.++..++++++.+.|+++....+ +....+. .++.+.+..+. ...++.+.|.++|+ -+.
T Consensus 350 ~~~~~~~~~~~~l~~~L~~~~~~~g--~~v~~~~-~~v~~~~~~~~---~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~ 423 (456)
T 2z67_A 350 ELVKNQKNSKKLLDELLNDLSKKTG--GKFLDVE-SPIASCISVNS---DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYL 423 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS--CCBCCCC-CSSEEEEECSS---CHHHHHHHHHHTTEESCEEECTTCHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccccC--CEecCCC-CeEEEEEeccc---HHHHHHHHHHHcCCCcceEEeecCccccccc
Confidence 5678888899999999988742111 1111223 45556553222 24678999999985 232
Q ss_pred -cCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 411 -PTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 411 -~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
....+++|+++++.+|+++|++++++|++++
T Consensus 424 ~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 424 GTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp SCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 2225799999998999999999999998754
No 214
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.85 E-value=3.7e-19 Score=183.45 Aligned_cols=306 Identities=15% Similarity=0.086 Sum_probs=189.4
Q ss_pred HHHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHHHhch---hcccCC-CCCcEEEEEccCccccccchhcccCCccc
Q 012138 119 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGY---VKKKFS-IDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~---~~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
..++.+++++++|.+ .++|++|||+|+..++++++.+.. ..+|.. .++..|++.... |.+...+....+...
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~-h~s~~~~~~~~g~g~- 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC-HYSIQKGAAFLGLGT- 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc-cHHHHHHHHHcCCCC-
Confidence 456778899998864 799999999999999998874311 111100 002255555555 655554443333210
Q ss_pred ccCCCCCCCCeeeecCC-----CHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEe
Q 012138 193 IRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~D 264 (470)
..+..+|.+ |+++|++++++. +.++++|+++.++|++|.+.| +++|.++|++||+++|+|
T Consensus 228 --------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~vD 295 (515)
T 2jis_A 228 --------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHVD 295 (515)
T ss_dssp --------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEE
T ss_pred --------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEEe
Confidence 012233322 899999999762 235888888888999999998 999999999999999999
Q ss_pred ccccCCcccCCccccccCCC-Ccceeec--cccccCCCcceeEEEecHH--HHhhc----CcCCcc-----------CCC
Q 012138 265 EIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE--VMLCI----QPGEHG-----------STF 324 (470)
Q Consensus 265 ev~~g~g~~G~~~~~~~~~~-~pdi~s~--sK~l~gG~~~ig~v~~~~~--~~~~~----~~~~~~-----------~t~ 324 (470)
++|+++......+.....++ .+|++++ +|.+++++ ++|+++++++ +++.. .+...+ .++
T Consensus 296 ~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~-g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 374 (515)
T 2jis_A 296 AAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGL-QCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDK 374 (515)
T ss_dssp ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGG
T ss_pred hhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCC-CeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCC
Confidence 99997655443332223344 5688766 79988776 8999998766 55431 111100 001
Q ss_pred ------CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-ccceeEEEEeccC---C--Cc
Q 012138 325 ------GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKT---A--LP 392 (470)
Q Consensus 325 ------~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~g~~~~~~~~~~---~--~~ 392 (470)
....+.+.+++.++..-.-+++.++..++++++.+.|+++ | .+..+. +....+.+..... . ..
T Consensus 375 ~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~-g~~~~~~~~~~~v~f~~~p~~~~~~~~~ 449 (515)
T 2jis_A 375 VVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR----E-GFELVMEPEFVNVCFWFVPPSLRGKQES 449 (515)
T ss_dssp CSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----T-TEEESSCCSSSEEEEEECCGGGTTCTTS
T ss_pred CCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----C-CEEEeCCCCeeEEEEEEeCccccccccc
Confidence 0123444444444432111446677777888888877663 2 232221 2233344433211 0 00
Q ss_pred hh--------HHHHHHHHHHcCceecc-----CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccc
Q 012138 393 VS--------AYDICLKMKERGILAKP-----THDTIVRLTP-PLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 393 ~~--------~~~~~~~l~~~Gv~~~~-----~~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.. ...+.+.|.++|+.+.. +..+++|+++ +..+|+++|++++++|+++++ ++
T Consensus 450 ~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~-~~ 515 (515)
T 2jis_A 450 PDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQ-DL 515 (515)
T ss_dssp TTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT-TC
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh-hC
Confidence 01 12367788888976532 2246899998 788999999999999999887 53
No 215
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.85 E-value=1.6e-20 Score=184.93 Aligned_cols=300 Identities=9% Similarity=0.050 Sum_probs=192.3
Q ss_pred CCHHHHHHHHHHHHHcccc------CCCC---CCCcHHHHHHHHhhhhCCC---e-EEecCChhHHHHHHHHHHHHhchh
Q 012138 92 CHPKIMKALQEQAEKLTLS------SRAF---YNDKFPVFAERLTSMFGYD---M-VLPMNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~------~~~~---~~~~~~~l~~~l~~~~~~~---~-v~~~~sGteA~~~al~~~~~~~~~ 158 (470)
.+|++++++.+.+...... .... ..+.++++++++++++|.+ + +++|+||++|+..+++.+..
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~---- 90 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLK---- 90 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCC----
Confidence 6899999999887543110 0001 1224678888999988764 5 46789999999999987643
Q ss_pred cccCCCCCcEEEEEccCccccc-cchhcccCCcccccCCCCCCCCeeeec----CC---CHHHHHHHHHhcCCCeEEEEE
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRT-LAAISMSCDNEAIRGFGPLLPGHLKVD----FG---DITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---d~~~Le~~l~~~~~~~~~vi~ 230 (470)
+|+ .|++..+.+++.. .......+.... +.++ ++ |+++++ ++ +++++|++
T Consensus 91 -----~gd-~vl~~~~~~~~~~~~~~~~~~g~~~~-----------v~~~~~~~~~~~~~~~~~~--i~---~~t~~v~~ 148 (362)
T 2c0r_A 91 -----EGQ-TANYVMTGSWASKALKEAKLIGDTHV-----------AASSEASNYMTLPKLQEIQ--LQ---DNAAYLHL 148 (362)
T ss_dssp -----TTC-EEEEEECSHHHHHHHHHHHHHSCEEE-----------EEECGGGTTCSCCCGGGCC--CC---TTEEEEEE
T ss_pred -----CCC-eEEEEecCcHhHHHHHHHHHhCCeEE-----------EecccccccccCCCHHHcc--cC---CCcCEEEE
Confidence 566 5555544433321 111111121111 1111 11 344332 33 37898887
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEec
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLAD 308 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~ 308 (470)
.+++||+|.++++ +++| ||+++|+||+|+-+.. ...... . |++ +++|.++ .. .+|+++++
T Consensus 149 ~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~~~~~---~~~~~~--~--d~~~~s~~K~~g-~~-G~G~l~~~ 210 (362)
T 2c0r_A 149 TSNETIEGAQFKA---FPDT------GSVPLIGDMSSDILSR---PFDLNQ--F--GLVYAGAQKNLG-PS-GVTVVIVR 210 (362)
T ss_dssp ESEETTTTEECSS---CCCC------TTSCEEEECTTTTTSS---CCCGGG--C--SEEEEETTTTTC-CS-SCEEEEEE
T ss_pred eCCcCccceeccc---cccc------CCCEEEEEChhhccCC---ccchhH--C--cEEEEecccccc-Cc-CcEEEEEc
Confidence 7669999997422 4444 8999999999973211 111221 2 544 7789996 22 47999999
Q ss_pred HHHHhhcCcC------------CccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 012138 309 KEVMLCIQPG------------EHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYV 372 (470)
Q Consensus 309 ~~~~~~~~~~------------~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~ 372 (470)
+++++.+... .....++.++.+++++.++|+.+.+ +.+.++.+++++++.+.|++++. ++
T Consensus 211 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~ 286 (362)
T 2c0r_A 211 EDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGG----FY 286 (362)
T ss_dssp GGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTT----SS
T ss_pred HHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCC----cc
Confidence 9988776531 0122356788888888999987654 45677777888888888876420 11
Q ss_pred EEE----eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 373 KEV----RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 373 ~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
... ...+.++.+.+.. +.+..++++.|.++||.+.++. .+.+|+++...+++|+++++++.|+++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 287 RGCVDVDSRSDMNITFRLAS---EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp EESSCGGGBCSSEEEEECSC---HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCChHHcCCcEEEEEcCC---cchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 111 1123445554432 1367889999999999887653 46799998888899999999999999887
No 216
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.84 E-value=2.2e-20 Score=187.55 Aligned_cols=287 Identities=10% Similarity=0.074 Sum_probs=184.9
Q ss_pred CHHHHHHHHHHHHHc---cccC-CCCCCCcHHHHHHHHhhhhCCCeEEe---cCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 93 HPKIMKALQEQAEKL---TLSS-RAFYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~---~~~~-~~~~~~~~~~l~~~l~~~~~~~~v~~---~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
++++++++.++.... .... ..+....+.++++++++++|.+..++ ++||++|++.+++.+.+ +|
T Consensus 37 ~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~---------~G 107 (431)
T 3ht4_A 37 QFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILR---------PG 107 (431)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCC---------TT
T ss_pred HHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCC---------CC
Confidence 466777776642111 1111 12234557889999999999887654 67999999999986643 45
Q ss_pred CcEEEEEc-cCccccccchhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEc-cccCCCc
Q 012138 166 EAIIVSCC-GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFE-PIQGEAG 238 (470)
Q Consensus 166 ~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~e-pi~n~~G 238 (470)
+ .|++.. +. |+.+...+.++++ ++..+......+..+++ .|+++|++++++ ++++|+++ +.+||+|
T Consensus 108 d-~Vl~~~~~~-y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~---~tk~V~i~~sp~np~~ 180 (431)
T 3ht4_A 108 D-ELLYITGKP-YDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS---NTKMIGIQRSKGYATR 180 (431)
T ss_dssp C-EEEECSSSC-CTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT---TEEEEEEECSCTTSSS
T ss_pred C-EEEEeCCCC-chhHHHHHhhccc--ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC---CCeEEEEECCCCCCCC
Confidence 5 677776 55 5555555444332 11111111122344444 289999999975 89999988 4788998
Q ss_pred cccCChhhHHHHHHHHHh--cCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCC-cceeEEEecHHHHhhc
Q 012138 239 VIIPPDGYLKAVRDLCSK--YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGV-IPVSAVLADKEVMLCI 315 (470)
Q Consensus 239 ~~~~~~~~l~~l~~l~~~--~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~-~~ig~v~~~~~~~~~~ 315 (470)
... +...+++|.++|++ ||++||+||+|+.+....... .++.+..+.|++|.++||+ .+.|++++++++++.+
T Consensus 181 ~~~-~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l 256 (431)
T 3ht4_A 181 PSF-TISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEAC 256 (431)
T ss_dssp CCC-CHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHH
T ss_pred CcC-CHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHH
Confidence 888 88889999999999 999999999999765443322 2344444558999998752 2668899999998877
Q ss_pred CcC----CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh-CCCceEEEeccceeEEEEeccCC
Q 012138 316 QPG----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ-FPNYVKEVRGRGLFNAVEFDKTA 390 (470)
Q Consensus 316 ~~~----~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-~p~~~~~~~~~g~~~~~~~~~~~ 390 (470)
... ..+.+.+.++..++++...++.+ +...++..+++.++.+.|++++.. +| . ...++.+.++.+.+...
T Consensus 257 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p-~-~~~~~~~li~~i~l~~~- 331 (431)
T 3ht4_A 257 AYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSP-A-WNAPRTDLIQSVQFDDK- 331 (431)
T ss_dssp HHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEES-C-TTSCCSSSCCEEECCCH-
T ss_pred HHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecC-C-CCCCCccEEEEEEeCCH-
Confidence 541 12222222222233344444443 446677788888888888887532 11 1 11234455788877643
Q ss_pred CchhHHHHHHHHHHcC
Q 012138 391 LPVSAYDICLKMKERG 406 (470)
Q Consensus 391 ~~~~~~~~~~~l~~~G 406 (470)
....++++.|.+..
T Consensus 332 --~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 332 --DRMIAFCQAIQYAS 345 (431)
T ss_dssp --HHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHHhcC
Confidence 36788999998873
No 217
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.84 E-value=7e-21 Score=191.63 Aligned_cols=317 Identities=8% Similarity=-0.025 Sum_probs=192.7
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCC-----cHHHHHHHHhhhh--------CCCeEEecCC
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND-----KFPVFAERLTSMF--------GYDMVLPMNT 140 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~--------~~~~v~~~~s 140 (470)
.+..+||..+... + ..++.+.+++.+.+.........|... ...+|++.+++++ ..++|++|+|
T Consensus 55 ~~~~i~l~~g~~~--~-~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G 131 (427)
T 2hox_A 55 QGCSADVASGDGL--F-LEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVG 131 (427)
T ss_dssp TTCCEECCSCCCG--G-GHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH
T ss_pred CCceEEecCcCCC--C-CCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCC
Confidence 4456788776432 2 244667777766652211110001111 1355555555544 2468999999
Q ss_pred hhHHHHHHHHHH--------HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHH
Q 012138 141 GAEGVETALKLA--------RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDIT 212 (470)
Q Consensus 141 GteA~~~al~~~--------~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 212 (470)
+++|+..+++.+ .. +|+ .|++..|+|.+........+.... ...+ |++
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~~---------~Gd-~Vlv~~P~y~~~~~~~~~~g~~~~-----------~~~~---d~~ 187 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPDA---------PES-KVVAHAPFYPVFREQTKYFDKKGY-----------VWAG---NAA 187 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTTS---------CCE-EEEECSSCCHHHHHHHHHSCBTTE-----------EEEE---EGG
T ss_pred HHHHHHHHHHHHhhccccccCC---------CCC-EEEEeCCCcccHHHHHHHcCCeee-----------eecC---CHH
Confidence 999999999877 33 454 788899998655443333222110 1223 778
Q ss_pred HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc
Q 012138 213 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292 (470)
Q Consensus 213 ~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s 292 (470)
+|++++++ ++++|++..++||+|.++ + +.+ + ++..|.|+.+-+ ..-...... .+...-+.|||
T Consensus 188 ~l~~~~~~---~~k~v~l~~p~NPtG~~~-~-~~l-------~--~~~~i~d~~~~~--~~~s~~~~~-~~~~i~~~S~S 250 (427)
T 2hox_A 188 NYVNVSNP---EQYIEMVTSPNNPEGLLR-H-AVI-------K--GCKSIYDMVYYW--PHYTPIKYK-ADEDILLFTMS 250 (427)
T ss_dssp GGTTCSCG---GGEEEEEESSCTTTCCCC-C-CSS-------T--TCEEEEECTTCS--TTTSCCCSC-BCCSEEEEEHH
T ss_pred HHHHhhcC---CceEEEEcCCCCCccccc-H-HHH-------c--CCCEEEeecccC--CCCCccccC-CCceEEEEeCh
Confidence 88877754 677777555599999999 5 422 2 456777877642 100111111 22222344999
Q ss_pred cccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh----------h---hhHHHHHHHHHHHH
Q 012138 293 KALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR----------D---EKLAERSAHLGEEL 357 (470)
Q Consensus 293 K~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~----------~---~~~~~~~~~~~~~l 357 (470)
|.++ +|+ |+|++++ ++++++.+.......+++.+.+++.++.++|+... + +..++.++++.+++
T Consensus 251 K~~g~~G~-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 329 (427)
T 2hox_A 251 KFTGHSGS-RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329 (427)
T ss_dssp HHTSCGGG-CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCc-eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 9998 898 9999999 58998888765444456678888888877776531 1 12345555566666
Q ss_pred HHHHHHH-HhhC-----CC---ceEEEecc-ceeEEEEeccCCCchhHHHHHHHHH-HcCceeccC-----CCCEEEEec
Q 012138 358 RQHLFKI-QQQF-----PN---YVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT-----HDTIVRLTP 421 (470)
Q Consensus 358 ~~~L~~l-~~~~-----p~---~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-----~~~~iR~~~ 421 (470)
.+.|+++ +..+ |. .+....+. |.|+++.+.. +..++++.|+ ++||.+.|+ ..+++|+++
T Consensus 330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-----~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~ 404 (427)
T 2hox_A 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-----EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSL 404 (427)
T ss_dssp HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-----GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEEC
T ss_pred HHHHHhCcCccccccccccccccccccCCCCceEEEEECCC-----cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEe
Confidence 6665543 1110 10 01112333 4555555542 3445777765 779999875 268999995
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 012138 422 PLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. .+++++++++++|.++++
T Consensus 405 ~--~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 405 I--KTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp S--SCHHHHHHHHHHHHHHHT
T ss_pred c--CCHHHHHHHHHHHHHHHh
Confidence 4 589999999999999987
No 218
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.84 E-value=1.1e-20 Score=188.48 Aligned_cols=300 Identities=11% Similarity=0.073 Sum_probs=188.8
Q ss_pred CCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCCC---eEEe-cCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~---~v~~-~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
.+|++.+++.+...........+ ..+...++++++++++|.+ ++++ |+||++|++.+++.+.. +|
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~---------~g 121 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID---------KR 121 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS---------SC
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC---------CC
Confidence 67889998876311110000111 1124578899999998753 7888 99999999999987743 33
Q ss_pred CcEEEEEccCccccccc--hhccc-CCcccccCCCCCCCCeeeecCC--CHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 166 EAIIVSCCGCFHGRTLA--AISMS-CDNEAIRGFGPLLPGHLKVDFG--DITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 166 ~~~ii~~~~~yhg~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~--d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
.+++ ...+|+.... +.... +.. ...++.+ ...+. .++ .++++|++..++||+|.+
T Consensus 122 --v~~v-~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~g~~~~~--~i~---~~~~~v~~~~~~nptG~~ 181 (398)
T 2fyf_A 122 --SLHL-TYGEFSAKFASAVSKNPFVGE------------PIIITSDPGSAPEP--QTD---PSVDVIAWAHNETSTGVA 181 (398)
T ss_dssp --EEEE-ECSHHHHHHHHHHHHCTTSCC------------CEEEECCTTCCCCC--CCC---TTCSEEEEESEETTTTEE
T ss_pred --eEEE-eCCHHHHHHHHHHHHhCCCCc------------eEEEecCCCCCCCc--ccc---CCCCEEEEeCcCCCccee
Confidence 2222 4444543221 11110 100 1112111 00000 122 367888866669999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCc-
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP- 317 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~- 317 (470)
.| +++|.++ ||+++|+||+|+.+... ...+ + +|++ +++|.++++- ++|++++++++++.++.
T Consensus 182 ~~----~~~i~~~---~~~~vivD~a~~~~~~~---~~~~--~--~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~l~~~ 246 (398)
T 2fyf_A 182 VA----VRRPEGS---DDALVVIDATSGAGGLP---VDIA--E--TDAYYFAPQKNFASDG-GLWLAIMSPAALSRIEAI 246 (398)
T ss_dssp CC----CCCCTTC---C-CEEEEECTTTTTTSC---CCGG--G--CSEEEECTTSTTCSCS-SEEEEEECHHHHHHHHHH
T ss_pred cc----hHHhhhh---cCCeEEEEeccccCCcc---cCcc--c--CcEEEEecCcccCCCC-ceEEEEECHHHHHHhhcc
Confidence 96 4444444 89999999999844322 1111 2 4665 5669998764 78999999998776521
Q ss_pred ---------CC----------ccCC-CCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 318 ---------GE----------HGST-FGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 318 ---------~~----------~~~t-~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
.. .+.+ ++.+..+++++.++++.+.+ +.+.++.+++++++.+.|+++ | .+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~-g~~ 321 (398)
T 2fyf_A 247 AATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----P-YTT 321 (398)
T ss_dssp HHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----T-TEE
T ss_pred cccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----C-Cce
Confidence 00 0223 34677777788888887654 346677777888888887764 1 233
Q ss_pred EEe--c--cce-eEEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 374 EVR--G--RGL-FNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 374 ~~~--~--~g~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
... + .+. ++++.++.. .+..++++.|.++||.+.++. .+++|+++...+|++|+++++++|+++++ +
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~-~ 397 (398)
T 2fyf_A 322 PFVTDPGLRSQVVGTIDFVDD---VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVE-R 397 (398)
T ss_dssp ESCCSGGGBCSSEEEEEECTT---SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHH-T
T ss_pred eccCChhhcCCcEEEEECCCC---CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHH-h
Confidence 221 2 344 677766432 367889999999999997652 57899998888899999999999999987 5
No 219
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.83 E-value=2.4e-19 Score=182.03 Aligned_cols=315 Identities=14% Similarity=0.093 Sum_probs=187.1
Q ss_pred CCHHHHHHHHHHHHH-ccccC--CCCC--CCcHHHHH----HHHhhhhCCCe-----EEecCChhHHHHHHHHHHHHhch
Q 012138 92 CHPKIMKALQEQAEK-LTLSS--RAFY--NDKFPVFA----ERLTSMFGYDM-----VLPMNTGAEGVETALKLARKWGY 157 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~-~~~~~--~~~~--~~~~~~l~----~~l~~~~~~~~-----v~~~~sGteA~~~al~~~~~~~~ 157 (470)
.+|+|++++...+.+ +..++ ..++ .+...+++ +++++++|.+. .++++||++||..++..+..
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~--- 142 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--- 142 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcC---
Confidence 579999999887643 32221 1111 12223444 88999998765 46677999999999987754
Q ss_pred hcccCCCCCcEEEEEccCccc-----cccc--hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEE
Q 012138 158 VKKKFSIDEAIIVSCCGCFHG-----RTLA--AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 158 ~~~~~~~g~~~ii~~~~~yhg-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
+|+ .|++.++.|.| .... .+.+++.. +.....+..++...+ |+++|++++.++ ++++|++
T Consensus 143 ------pGD-~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~-~~~~~~~vd~~~~~i---D~d~le~~l~~~--~~klIi~ 209 (490)
T 2a7v_A 143 ------PHD-RIMGLDLPDGGHLTHGYMSDVKRISATSIF-FESMPYKLNPKTGLI---DYNQLALTARLF--RPRLIIA 209 (490)
T ss_dssp ------SCE-ECCC--------------------------------CCBCTTTCSB---CHHHHHHHHHHH--CCSEEEE
T ss_pred ------CCC-EecccCccccccccchhhhcchhHHHcCCe-EEEEecccccccCCc---CHHHHHHHHhhc--CCcEEEE
Confidence 566 67776666422 2111 11122210 100000111111223 899999999754 5677777
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCcc-ccccCCCCccee--eccccccCCCcceeEEE
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRML-ASDWEEVRPDMV--ILGKALGGGVIPVSAVL 306 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~-~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~ 306 (470)
....+| .+.+ +++|.++|++||++|++|++|. |+...|... .++ + .|++ +++|+++| . +.|+++
T Consensus 210 ~~s~~~--~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~--aDiv~~S~hK~l~G-p-~GG~i~ 277 (490)
T 2a7v_A 210 GTSAYA--RLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--H--ADIVTTTTHKTLRG-A-RSGLIF 277 (490)
T ss_dssp CCSSCC--SCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--T--CSEEEEESSGGGCS-C-SCEEEE
T ss_pred cCCCCC--Cccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--C--CCEEEECCcccCcc-c-cchhee
Confidence 553443 4555 9999999999999999999987 543333221 111 2 3655 67799964 3 678888
Q ss_pred ecHH---------------HHhhcCcCCccCCCC-CCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 307 ADKE---------------VMLCIQPGEHGSTFG-GNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 307 ~~~~---------------~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
++++ +.+.++......+.+ .++..+++..++++.+.. +++.+++.+++++|.+.|.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G-- 355 (490)
T 2a7v_A 278 YRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG-- 355 (490)
T ss_dssp EECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred eccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 8764 333443222222333 455555565556665533 4577788889999999998742
Q ss_pred CCCceEEEe-c-cceeEEEEeccCCCchhHHHHHHHHHHcCceecc----C-----CCCEEEEecC----CCCCHHHHHH
Q 012138 368 FPNYVKEVR-G-RGLFNAVEFDKTALPVSAYDICLKMKERGILAKP----T-----HDTIVRLTPP----LSISSNELQE 432 (470)
Q Consensus 368 ~p~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~----~-----~~~~iR~~~~----~~~t~e~i~~ 432 (470)
+..+. + ...++++.+... +.+..++.+.|.+.||.+.. + .+..+||..+ ..++++|+++
T Consensus 356 ----~~v~~~~t~t~lv~vdl~~~--g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~ 429 (490)
T 2a7v_A 356 ----YSLVSGGTDNHLVLVDLRPK--GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR 429 (490)
T ss_dssp ----CEEGGGSCSSSEEEEECTTT--TCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred ----cEEecCCCCCeEEEEEeCCC--CCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHH
Confidence 22222 1 224555544332 23677888999999999862 2 2578999654 3578999999
Q ss_pred HHHHHHHHHh
Q 012138 433 GSKALHDVLE 442 (470)
Q Consensus 433 ~~~~l~~~l~ 442 (470)
+++.|.+++.
T Consensus 430 ~~~~i~~~l~ 439 (490)
T 2a7v_A 430 VVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 220
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.83 E-value=1.7e-18 Score=178.04 Aligned_cols=307 Identities=14% Similarity=0.071 Sum_probs=184.6
Q ss_pred cHHHHHHHHhhhhCCC----eEEecCChhHHHHHHHHHHHHhch---hcccCCCC-CcEEEEEccCccccccchhcccCC
Q 012138 118 KFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGY---VKKKFSID-EAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~----~v~~~~sGteA~~~al~~~~~~~~---~~~~~~~g-~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
+..++.+++++++|.+ .++|++||++|+..++.+++.... +++|.+.. +..|++.... |.+...+....+.
T Consensus 136 le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~-H~s~~~~~~~~g~ 214 (511)
T 3vp6_A 136 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS-HYSIKKAGAALGF 214 (511)
T ss_dssp HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCc-hHHHHHHHHHcCC
Confidence 3456777888888765 689999999999999998875210 12222111 2245555554 6555554444332
Q ss_pred cccccCCCCCCCCeeeecCC-----CHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEE
Q 012138 190 NEAIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM 261 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gill 261 (470)
... .+..++.+ |+++|+++|++. +..+++|+++..+|++|.+.| +++|.++|++||+++
T Consensus 215 g~~---------~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~l 281 (511)
T 3vp6_A 215 GTD---------NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWL 281 (511)
T ss_dssp CGG---------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEE
T ss_pred CCC---------cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHHcCCEE
Confidence 100 01223322 899999999763 123788888777999999988 999999999999999
Q ss_pred EEeccccCCcccCCccccccCCC-Cccee--eccccccCCCcceeEEEecH-HHHhhcCc----CCc--c----------
Q 012138 262 IADEIQSGLARSGRMLASDWEEV-RPDMV--ILGKALGGGVIPVSAVLADK-EVMLCIQP----GEH--G---------- 321 (470)
Q Consensus 262 I~Dev~~g~g~~G~~~~~~~~~~-~pdi~--s~sK~l~gG~~~ig~v~~~~-~~~~~~~~----~~~--~---------- 321 (470)
++|++|++.......+.....++ ..|++ +..|.+++++ .+|+++.++ ++...... ... .
T Consensus 282 hvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~ 360 (511)
T 3vp6_A 282 HVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL-QCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTG 360 (511)
T ss_dssp EEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCG
T ss_pred EEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCc-CeEEEEEeCHHHHHHHhccCCccccCcccccccccCcc
Confidence 99999985322221111111222 24665 4559888765 778887654 34433211 000 0
Q ss_pred -CCC-CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe---ccceeEEEEeccCCC--
Q 012138 322 -STF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTAL-- 391 (470)
Q Consensus 322 -~t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~---~~g~~~~~~~~~~~~-- 391 (470)
.+. .+.+..+..+.++++.+.. +++.++..++.+++.+.|+++ | .+..+. +...++.|.+.....
T Consensus 361 ~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~----p-g~~l~~~~~p~~~~v~f~~~p~~~~~ 435 (511)
T 3vp6_A 361 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----E-EFEMVFNGEPEHTNVCFWYIPQSLRG 435 (511)
T ss_dssp GGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----T-TEEESSSSCCSSSCEEEEECCGGGSS
T ss_pred CCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----C-CEEEEecCCCCeEEEEEEEeCccccc
Confidence 000 0111223333444554433 456677777788888777653 2 333332 445555554422110
Q ss_pred -----------chhHHHHHHHHHHcCceecc-----CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccc
Q 012138 392 -----------PVSAYDICLKMKERGILAKP-----THDTIVRLTP-PLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 392 -----------~~~~~~~~~~l~~~Gv~~~~-----~~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.....++.+.|.++|+++.. ++.+++|+++ ...+++++|+.+++.|++.-+ .+
T Consensus 436 ~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~-~~ 505 (511)
T 3vp6_A 436 VPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ-DL 505 (511)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH-hh
Confidence 01134688999999865432 2235799998 678899999999999998876 54
No 221
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.81 E-value=4.1e-18 Score=174.48 Aligned_cols=306 Identities=12% Similarity=0.023 Sum_probs=180.9
Q ss_pred cHHHHHHHHhhhhCCC-----------eEEecCChhHHHHHHHHHHHHhchhcccCCCC--------Cc-EEEEEccCcc
Q 012138 118 KFPVFAERLTSMFGYD-----------MVLPMNTGAEGVETALKLARKWGYVKKKFSID--------EA-IIVSCCGCFH 177 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~-----------~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g--------~~-~ii~~~~~yh 177 (470)
+..++.+++++++|.+ .+++|+|||+|+..++..++.....+.+.+.| ++ .|++..+. |
T Consensus 114 le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~-h 192 (486)
T 1js3_A 114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA-H 192 (486)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC-C
T ss_pred HHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCC-c
Confidence 3445667788888765 37999999999999998876421110000002 13 35556666 4
Q ss_pred ccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC---CCeEEEEEccccCCCccccCChhhHHHHHHHH
Q 012138 178 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 254 (470)
Q Consensus 178 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~---~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~ 254 (470)
.+...+....+-.... .+.. +...+ |+++|+++|++.. ..+.+|++...+|++|.+.| +++|.++|
T Consensus 193 ~s~~~~~~~~G~~v~~---v~~d-~~~~~---d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~----l~~I~~la 261 (486)
T 1js3_A 193 SSVERAGLIGGVKLKA---IPSD-GKFAM---RASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPIC 261 (486)
T ss_dssp HHHHHHHHHHTCEEEE---ECCC-TTSCC---CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHH
T ss_pred HHHHHHHHhCCCceEE---eecC-CCCCC---CHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC----HHHHHHHH
Confidence 4443333333321111 1110 01122 8999999997621 11236665555899999988 99999999
Q ss_pred HhcCcEEEEeccccCCcccCCccccccCCC-Ccceee--ccccccCCCcceeEEEecHH--HHhhcCc---CCcc--C--
Q 012138 255 SKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVI--LGKALGGGVIPVSAVLADKE--VMLCIQP---GEHG--S-- 322 (470)
Q Consensus 255 ~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~s--~sK~l~gG~~~ig~v~~~~~--~~~~~~~---~~~~--~-- 322 (470)
++||+++++|++|+++......+.....++ ..|.++ .+|.++.++ ++|+++++++ +.+.+.. ...+ .
T Consensus 262 ~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~-~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~ 340 (486)
T 1js3_A 262 HEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (486)
T ss_dssp HHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESCHHHHHGGGC------------C
T ss_pred HHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc-ceEEEEEeCHHHHHHHhcCCchhhCCCcccc
Confidence 999999999999986432211111101122 236654 469888776 9999998644 2444421 0000 0
Q ss_pred -----------CC--CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEE
Q 012138 323 -----------TF--GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVE 385 (470)
Q Consensus 323 -----------t~--~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~ 385 (470)
.. ....+.+. ++++.+.. +++.++..++++++.+.|+++ | .+..+ .+.+.++.|.
T Consensus 341 ~~~~~~~~~~~~~~rr~~~~~~~---~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~-~~~~~~~~~~~~v~f~ 412 (486)
T 1js3_A 341 GLITDYRHWQLPLGRRFRSLKMW---FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD----P-RFEVCAEVTLGLVCFR 412 (486)
T ss_dssp CSCCCGGGSSSCSCCCCTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----T-TEEECSCCCSSEEEEE
T ss_pred cCCCCccccCCCCCCchhHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----C-CeEEeCCCceeEEEEE
Confidence 00 12233333 34443332 445666677777887777663 2 23332 2456667776
Q ss_pred eccCCCchhHHHHHHHHHHcCceec-cC---CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 386 FDKTALPVSAYDICLKMKERGILAK-PT---HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~-~~---~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
+.... ....++.+.|.++|+++. ++ +.+++|+++ ....|+++|++++++|+++++ ++.+
T Consensus 413 ~~~~~--~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~-~~~~ 476 (486)
T 1js3_A 413 LKGSD--GLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA-ELLA 476 (486)
T ss_dssp ESSCH--HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HHHC
T ss_pred ecChH--HHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence 64211 135789999998986543 22 357899995 445789999999999999988 7644
No 222
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.80 E-value=1.3e-17 Score=170.26 Aligned_cols=302 Identities=12% Similarity=0.042 Sum_probs=183.5
Q ss_pred CcHHHHHHHHhhhhCCC------------eEEecCChhHHHHHHHHHHHHhchhcc----------cCCCCCcEEEEEcc
Q 012138 117 DKFPVFAERLTSMFGYD------------MVLPMNTGAEGVETALKLARKWGYVKK----------KFSIDEAIIVSCCG 174 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~------------~v~~~~sGteA~~~al~~~~~~~~~~~----------~~~~g~~~ii~~~~ 174 (470)
++..++.+++++++|.+ ..++|+|||+||..++.+++.....+. +.. .+.+|++...
T Consensus 118 ~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~-~~~~v~~s~~ 196 (481)
T 4e1o_A 118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLN-ARLVAYASDQ 196 (481)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHH-TTEEEEEETT
T ss_pred HHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCccccccccc-CCeEEEEcCc
Confidence 34556667778887754 568999999999999998876422110 000 1224555555
Q ss_pred CccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcC---CCeEEEEEccccCCCccccCChhh
Q 012138 175 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 175 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~---~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
+ |.+...+..+.+... ..+|.+ |+++|+++|++.. ..+.+|++....+++|.+.|
T Consensus 197 ~-H~s~~~~~~~~g~~~------------~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~---- 259 (481)
T 4e1o_A 197 A-HSSVEKAGLISLVKM------------KFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC---- 259 (481)
T ss_dssp S-CHHHHHHHHHHTCEE------------EEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred c-hHHHHHHHHhCCCce------------EEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----
Confidence 5 666555544443221 222221 8999999997631 12666776666889999998
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC-Ccceeec--cccccCCCcceeEEEecHH-HH-hhcCcC---
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE-VM-LCIQPG--- 318 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~s~--sK~l~gG~~~ig~v~~~~~-~~-~~~~~~--- 318 (470)
+++|.++|++||+++++|++|++.......+.....++ ..|.+++ .|.++..+ .+|+++.++. .. +.+...
T Consensus 260 l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~-g~g~l~~~~~~~l~~~~~~~~~y 338 (481)
T 4e1o_A 260 LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF-DCTGFWVKDKYKLQQTFSVNPIY 338 (481)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESBHHHHHTTTCCCCGG
T ss_pred HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC-ceEEEEEeCHHHHHHHhcCCchh
Confidence 99999999999999999999986422222111111233 2376655 58888765 7777776543 32 222110
Q ss_pred C-c---cC-------CC-CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeE
Q 012138 319 E-H---GS-------TF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFN 382 (470)
Q Consensus 319 ~-~---~~-------t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~ 382 (470)
. . +. +. .+.........++++.+.. +++.++..++++++.+.|+++ | .+... .+...++
T Consensus 339 l~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~-g~~~~~~~~~~~v 413 (481)
T 4e1o_A 339 LRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND----P-SFEIPAKRHLGLV 413 (481)
T ss_dssp GCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----T-TEECCSCCCSSEE
T ss_pred ccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CeEEecCCceeEE
Confidence 0 0 00 00 0111122233334444333 456667777888888877664 1 23222 2344556
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCce-ecc---CCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccc
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGIL-AKP---THDTIVRLTPP-LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~-~~~---~~~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.+.... ....++.++|.++|++ +.+ .+..++|+++. ..+|+++|++++++|+++++ ++
T Consensus 414 ~f~~~~~~--~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~-~l 478 (481)
T 4e1o_A 414 VFRLKGPN--SLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT-LI 478 (481)
T ss_dssp EEEESSCH--HHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred EEEeCCch--HHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 66554321 3567899999999854 443 23568999965 34589999999999999987 65
No 223
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.79 E-value=2e-17 Score=168.63 Aligned_cols=306 Identities=12% Similarity=-0.002 Sum_probs=184.0
Q ss_pred cHHHHHHHHhhhhCCC-----------eEEecCChhHHHHHHHHHHHHhchhcc--cCCC-------CCcEEEEEccCcc
Q 012138 118 KFPVFAERLTSMFGYD-----------MVLPMNTGAEGVETALKLARKWGYVKK--KFSI-------DEAIIVSCCGCFH 177 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~-----------~v~~~~sGteA~~~al~~~~~~~~~~~--~~~~-------g~~~ii~~~~~yh 177 (470)
+..++.+++++++|.+ ..+||+|||+||..++.+++.....+. +.+. .+.+|++...+ |
T Consensus 114 lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~-H 192 (475)
T 3k40_A 114 LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA-H 192 (475)
T ss_dssp HHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS-C
T ss_pred HHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc-h
Confidence 3455667778888765 589999999999999998876421110 0000 12245555555 6
Q ss_pred ccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHH
Q 012138 178 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 254 (470)
Q Consensus 178 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~ 254 (470)
-+...+..+.+..... .+...+ . + |+++|+++|++. +..+.+|++....+++|.+.| +++|.++|
T Consensus 193 ~s~~~~~~~~g~~~~~---v~~d~~-~-~---d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la 260 (475)
T 3k40_A 193 SSVERAGLLGGVKLRS---VQSENH-R-M---RGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVG 260 (475)
T ss_dssp HHHHHHHHHHTCEEEE---ECCBTT-B-C---CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHH
T ss_pred HHHHHHHHHcCCceEE---EECCCC-C-c---CHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHH
Confidence 6655554444322111 111111 1 3 899999999763 122566776666889999998 99999999
Q ss_pred HhcCcEEEEeccccCCcccCCccccccCCC-Ccceeec--cccccCCCcceeEEEecHH-HH-hhcCc---CC-c---cC
Q 012138 255 SKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE-VM-LCIQP---GE-H---GS 322 (470)
Q Consensus 255 ~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~s~--sK~l~gG~~~ig~v~~~~~-~~-~~~~~---~~-~---~~ 322 (470)
++||+++++|++|++.......+.....++ ..|.+++ .|.+++.+ .+|+++.++. .. +.+.. +. . +.
T Consensus 261 ~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~-g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~ 339 (475)
T 3k40_A 261 NKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF-DCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS 339 (475)
T ss_dssp HHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESSGGGC------------------
T ss_pred HHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC-ceEEEEEeCHHHHHHHhcCCccccCCCcCCC
Confidence 999999999999985322221111111232 2476655 58888776 7888886643 21 22210 00 0 00
Q ss_pred -----CC---CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCC
Q 012138 323 -----TF---GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTA 390 (470)
Q Consensus 323 -----t~---~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~ 390 (470)
.+ .+-+.......++++.+.. +++.++..++++++.+.|+++ | .+... .+...++.+.+....
T Consensus 340 ~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~-g~~l~~~~~~~iv~f~~~~~~ 414 (475)
T 3k40_A 340 APDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD----S-RFELAAEINMGLVCFRLKGSN 414 (475)
T ss_dssp ---------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----T-TEEESSCCBTTEEEEEESSCH
T ss_pred CCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----C-CEEEecCCceEEEEEEeCCch
Confidence 00 1111223334445554443 456677778888888888774 1 23322 234455666554321
Q ss_pred CchhHHHHHHHHHHcCcee-cc---CCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccc
Q 012138 391 LPVSAYDICLKMKERGILA-KP---THDTIVRLTPP-LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 391 ~~~~~~~~~~~l~~~Gv~~-~~---~~~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
....++.++|.++|.+. .+ .+..++|+++. ..+|+++|++++++|+++++ ++
T Consensus 415 --~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~-~~ 471 (475)
T 3k40_A 415 --ERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAAD-EM 471 (475)
T ss_dssp --HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred --HHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 35678999999997654 32 24578999965 34689999999999999988 65
No 224
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.79 E-value=6.5e-18 Score=168.20 Aligned_cols=279 Identities=10% Similarity=0.084 Sum_probs=173.0
Q ss_pred CHHHHHHHHHHHHH---ccccCC-CCCCCcHHHHHHHHhhhhCCCeEEe---cCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 93 HPKIMKALQEQAEK---LTLSSR-AFYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 93 ~p~v~~a~~~~~~~---~~~~~~-~~~~~~~~~l~~~l~~~~~~~~v~~---~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
+++|++++.+.... +..... .|....+.+|++.+++++|.+..++ ++||++|+..++..+.+ +|
T Consensus 31 ~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~---------~G 101 (409)
T 3jzl_A 31 QAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILR---------PD 101 (409)
T ss_dssp HHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCC---------TT
T ss_pred HHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcC---------CC
Confidence 45677776664311 111111 2223346789999999999988777 89999999999987654 46
Q ss_pred CcEEEEEc-cCccccccchhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEcc----ccC
Q 012138 166 EAIIVSCC-GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEP----IQG 235 (470)
Q Consensus 166 ~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~ep----i~n 235 (470)
+ .|++.. +.|.+... .+...+.. ...+.........++. .|+++|++++++ ++++|++++ ++|
T Consensus 102 D-~Vl~~~~~~y~~~~~-~~~~~g~~--~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~---~tklV~i~~s~g~p~n 174 (409)
T 3jzl_A 102 D-ELLYITGQPYDTLEE-IVGIRKQG--QGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP---KTKMIGIQRSRGYADR 174 (409)
T ss_dssp C-EEEECSSSCCTTHHH-HHTSSSSS--SSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT---TEEEEEEECSCTTSSS
T ss_pred C-EEEEeCCCCcHhHHH-HHhcccch--hhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC---CCeEEEEECCCCCCCC
Confidence 5 677776 67654321 11000000 0000000001122222 389999999875 799999998 899
Q ss_pred CCccccCChhhHHHHHHHHHh--cCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCC-cceeEEEecHH
Q 012138 236 EAGVIIPPDGYLKAVRDLCSK--YNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLADKE 310 (470)
Q Consensus 236 ~~G~~~~~~~~l~~l~~l~~~--~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~-~~ig~v~~~~~ 310 (470)
|+|.+.+ +++|.++|++ ||+++|+||+|+.+....... ..+ .|++ |++|.++|+. ...|+++++++
T Consensus 175 ptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~---~~g--~Div~~S~sK~lgg~~~~~GG~v~~~~~ 245 (409)
T 3jzl_A 175 PSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP---EVG--ADIIAGSLIKNPGGGLAKTGGYIAGKEA 245 (409)
T ss_dssp CCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG---GGT--CSEEEEETTSGGGTTTCSSCEEEEECHH
T ss_pred CcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCcc---ccC--CeEEEECccccCCccCCceEEEEEeCHH
Confidence 9999987 9999999999 999999999998432111111 123 3655 8899998642 14688999999
Q ss_pred HHhhcCcCC----ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce-----e
Q 012138 311 VMLCIQPGE----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-----F 381 (470)
Q Consensus 311 ~~~~~~~~~----~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~-----~ 381 (470)
+++.+.... .+...+..+..+.++...++.+ +...++..+++.++.+.|++++.+ ..++... +
T Consensus 246 li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~------v~p~~~~~~~~~i 317 (409)
T 3jzl_A 246 LVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVE------ADPVWDAPRTDLI 317 (409)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCE------EESCTTSCCSSSC
T ss_pred HHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCc------ccCCCCCCCccEE
Confidence 988875421 1122222222233343334332 446677777888888888875321 1222222 7
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCc
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGI 407 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv 407 (470)
+.+.+... ....++++.|++...
T Consensus 318 ~~i~l~~~---~~~~~~~~~L~~~~~ 340 (409)
T 3jzl_A 318 QSVSFHNK---EKMVAFAQAIQAASP 340 (409)
T ss_dssp CEEECSCH---HHHHHHHHHHHHTSS
T ss_pred EEEEeCCH---HHHHHHHHHHHhcCc
Confidence 77777533 477889999998853
No 225
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.78 E-value=8.1e-18 Score=169.99 Aligned_cols=280 Identities=14% Similarity=0.153 Sum_probs=168.6
Q ss_pred CcHHHHHHHHhhhhCCCe--EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc----ccCCc
Q 012138 117 DKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS----MSCDN 190 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~--v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~----~~~~~ 190 (470)
+...++++++++++|.+. +++++|++.++++++.+++. . +++ .|++..+.| ......+. ..+-.
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~---~-----~gd-~Viv~~~~h-~s~~~~~~~~a~~~G~~ 177 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE---T-----GRM-GVLVSQGVH-PEYRAVLRAYLEAVGAK 177 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH---H-----TCC-EEEEETTSC-HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhc---C-----CCC-EEEEcCccC-HhHHHHHHHHHHHCCCE
Confidence 346788999999998764 57889999555555443321 0 344 777777775 33332221 11211
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecc-ccC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI-QSG 269 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev-~~g 269 (470)
... .+. .+ ..+ |+++ +++ ++++|+++.+ |++|.+.| +++|.++|++||+++|+|.. ++
T Consensus 178 v~~---v~~-~~-~~~---d~~~----i~~---~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a- 236 (438)
T 1wyu_A 178 LLT---LPL-EG-GRT---PLPE----VGE---EVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS- 236 (438)
T ss_dssp EEE---ECC-BT-TBC---CCCC----CCT---TEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-
T ss_pred EEE---EcC-cC-Ccc---CHHH----hCC---CeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-
Confidence 110 010 00 011 3333 333 7899987776 99999998 99999999999999996632 32
Q ss_pred CcccCCccccccCCCCcceeecc-cccc-----CCCcceeEEEecHHHHhhcCcCCc-----------------------
Q 012138 270 LARSGRMLASDWEEVRPDMVILG-KALG-----GGVIPVSAVLADKEVMLCIQPGEH----------------------- 320 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~s~s-K~l~-----gG~~~ig~v~~~~~~~~~~~~~~~----------------------- 320 (470)
+|.... ...+ .+|++++| |.++ +|. ++|++++++++++.+.....
T Consensus 237 ~g~~~~---~~~~--g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 310 (438)
T 1wyu_A 237 LGVLKP---PGAY--GADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI 310 (438)
T ss_dssp GGTBCC---HHHH--TCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred ccCcCC---CccC--CCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeecccccccc
Confidence 221111 1112 34777664 6543 566 89999999988877632110
Q ss_pred ---cCCCCC---CHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC
Q 012138 321 ---GSTFGG---NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 391 (470)
Q Consensus 321 ---~~t~~~---~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~ 391 (470)
..++.. +.+...++...+..+.+ +++.++.+++++++.+.|+++ | .+....+...+..+.+..+.
T Consensus 311 r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~~~~~~~~~~~~~~- 384 (438)
T 1wyu_A 311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----P-GVRPFTPKPFFNEFALALPK- 384 (438)
T ss_dssp HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----T-TCEECSCSSBCSEEEEECSS-
T ss_pred chhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----C-CeEECCCCCeEEEEEEeCCC-
Confidence 122221 22322222223444433 345666777777777777654 1 23322222333333333222
Q ss_pred chhHHHHHHHHHHcCcee--ccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 392 PVSAYDICLKMKERGILA--KPTH---DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 392 ~~~~~~~~~~l~~~Gv~~--~~~~---~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+..+++++|.++||.+ .++. ++++|+++...+|++++++++++|++++
T Consensus 385 --~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 385 --DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp --CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 5788999999999998 4442 7899999988899999999999998865
No 226
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.77 E-value=1.5e-17 Score=176.10 Aligned_cols=304 Identities=10% Similarity=-0.008 Sum_probs=185.3
Q ss_pred CcHHHHHHHHhhhhCCCeEE-ecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch-hcccCCccccc
Q 012138 117 DKFPVFAERLTSMFGYDMVL-PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-ISMSCDNEAIR 194 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~v~-~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~-~~~~~~~~~~~ 194 (470)
....++++.+++++|.+..+ +++|+++|+.+++..+.. +|+ .||+..++| .+...+ +.+++......
T Consensus 173 ~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~---------pGD-~VLv~~~~H-~S~~~~~~~l~Ga~~v~v 241 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVS---------NGD-LVLFDRNNH-KSVYNSALAMAGGRPVYL 241 (730)
T ss_dssp THHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCC---------TTC-EEEEETTCC-HHHHHHHTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcC---------CCC-EEEEcCCch-HHHHHHHHHHCCCEEEEE
Confidence 45789999999999988754 555556999999887754 455 788888874 333333 33333211100
Q ss_pred CCCCCCCC-eeeecCCCHHHH-----HHHHHhcCCC---e----EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEE
Q 012138 195 GFGPLLPG-HLKVDFGDITAL-----EKIFKESGDQ---I----AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM 261 (470)
Q Consensus 195 ~~~~~~~~-~~~~~~~d~~~L-----e~~l~~~~~~---~----~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gill 261 (470)
....-.-+ ...+ |+++| +++++++..+ + ++++++.. |++|.+.| +++|.++|++||++|
T Consensus 242 ~~~~~~~~i~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d----l~~I~~la~~~g~~l 313 (730)
T 1c4k_A 242 QTNRNPYGFIGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN----AHEVVKRIGHLCDYI 313 (730)
T ss_dssp CEEECTTCCEEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC----HHHHHHHHGGGBSEE
T ss_pred eCCccccCccCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC----HHHHHHHHHHcCCeE
Confidence 00000000 0112 66666 8888753100 3 66664432 58999998 999999999999999
Q ss_pred EEeccccC---CcccCC---ccccccCCCC-cc-ee--eccccccCCCcceeEEEecHHHH---------hhcCcC-Ccc
Q 012138 262 IADEIQSG---LARSGR---MLASDWEEVR-PD-MV--ILGKALGGGVIPVSAVLADKEVM---------LCIQPG-EHG 321 (470)
Q Consensus 262 I~Dev~~g---~g~~G~---~~~~~~~~~~-pd-i~--s~sK~l~gG~~~ig~v~~~~~~~---------~~~~~~-~~~ 321 (470)
|+||+|++ |+..++ ....+.++.+ ++ ++ |++|+++|-- ..|+++.+++.+ ..+... ...
T Consensus 314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~-~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~ 392 (730)
T 1c4k_A 314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLF 392 (730)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHHH
T ss_pred EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCC-CEEEEEecchhhcCcccccCHHHHHHHHHHh
Confidence 99999973 322111 1112223432 11 33 7789876421 234554443322 111100 112
Q ss_pred CCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH-HHhhCCCceEEEec--------------------
Q 012138 322 STFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFK-IQQQFPNYVKEVRG-------------------- 377 (470)
Q Consensus 322 ~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~-l~~~~p~~~~~~~~-------------------- 377 (470)
.+.+.+...+++..++++.+.. .++.++..++.+++++.|++ +. .+....+
T Consensus 393 ~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~-----g~~v~~p~~~~~~~~~~~~~~~~~~~~ 467 (730)
T 1c4k_A 393 MSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGS-----MFRPFVPPVVNGKKWEDGDTEDMANNI 467 (730)
T ss_dssp SCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTC-----SSEESSCSEETTEEGGGSCHHHHTTCG
T ss_pred CCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCC-----CeEEccccccccccccccccccccccc
Confidence 2344677777777777776654 45677788888888888876 21 1111000
Q ss_pred ------------------cce-e-----EEEEecc--------CCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCC
Q 012138 378 ------------------RGL-F-----NAVEFDK--------TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSI 425 (470)
Q Consensus 378 ------------------~g~-~-----~~~~~~~--------~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~ 425 (470)
.+. + +.+..+. ...+.++..+.+.|+++||.+...+...+|++++..+
T Consensus 468 ~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~ 547 (730)
T 1c4k_A 468 DYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAE 547 (730)
T ss_dssp GGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTC
T ss_pred hhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCC
Confidence 111 1 2332210 1113468899999999999998777889999999999
Q ss_pred CHHHHHHHHHHHHHHHhcccC
Q 012138 426 SSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|+++++.++++|.++.+ ++.
T Consensus 548 t~e~i~~Ll~aL~~i~~-~~~ 567 (730)
T 1c4k_A 548 TPAKMNNLITQLLQLQR-LIE 567 (730)
T ss_dssp CHHHHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHH-hcc
Confidence 99999999999999987 663
No 227
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.77 E-value=2.8e-17 Score=164.20 Aligned_cols=271 Identities=14% Similarity=0.111 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHH---ccccC-CCCCCCcHHHHHHHHhhhhCCCeEEe---cCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 93 HPKIMKALQEQAEK---LTLSS-RAFYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 93 ~p~v~~a~~~~~~~---~~~~~-~~~~~~~~~~l~~~l~~~~~~~~v~~---~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
+++|.+++.+.... +.... ..|...-..++++.+++++|.+..++ ++||++|+..++..+.+ +|
T Consensus 46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~---------pG 116 (427)
T 3hvy_A 46 QLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLR---------PN 116 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCC---------TT
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcC---------CC
Confidence 36677766654321 11111 11222336889999999999988777 89999999999887654 56
Q ss_pred CcEEEEEc-cCcccccc----------chhcccCCcccccCCCCCCCCeeeecC----CCHHHHHHHHHhcCCCeEEEEE
Q 012138 166 EAIIVSCC-GCFHGRTL----------AAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 166 ~~~ii~~~-~~yhg~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
| .|++.+ +.|++... ..+...+. ....++. .|+++|+++++++ +++++|++
T Consensus 117 D-~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~------------~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i 182 (427)
T 3hvy_A 117 D-TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV------------KYKMVDLKDGKVDINTVKEELKKD-DSIKLIHI 182 (427)
T ss_dssp C-EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC------------EEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEE
T ss_pred C-EEEEeCCCCchhHHHHhccccchhhhHHHHcCC------------EEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEE
Confidence 6 777777 77765431 11111111 1123333 3899999999841 27999999
Q ss_pred cc----ccCCCccccCChhhHHHHHHHHHh--cCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCC-cc
Q 012138 231 EP----IQGEAGVIIPPDGYLKAVRDLCSK--YNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGV-IP 301 (470)
Q Consensus 231 ep----i~n~~G~~~~~~~~l~~l~~l~~~--~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~-~~ 301 (470)
++ ++||+|.+.+ +++|.++|++ ||+++|+|++|+.+....... ..+. |++ |++|.++|+. ..
T Consensus 183 ~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~---~~ga--Div~~S~sK~lgg~g~~~ 253 (427)
T 3hvy_A 183 QRSTGYGWRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT---DVGA--DIIAGSLIKNIGGGIATT 253 (427)
T ss_dssp ESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG---GGTC--SEEEEETTSGGGTTTCCS
T ss_pred ECCCCCCCCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc---ccCC--eEEEECCcccccccccce
Confidence 88 8999998887 9999999999 899999999997442122111 1233 554 8899998642 25
Q ss_pred eeEEEecHHHHhhcCcCCc----cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 302 VSAVLADKEVMLCIQPGEH----GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~----~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
.|++++++++++.++.... +.+.+.++..+..+...++.+ +...++..+++.++.+.|++++. ...++
T Consensus 254 GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g~------~V~p~ 325 (427)
T 3hvy_A 254 GGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELAGF------DVLPK 325 (427)
T ss_dssp CEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTC------EEESC
T ss_pred EEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCC------eecCC
Confidence 6889999999988764211 111122122233333333332 44667777788888888877532 11222
Q ss_pred cce-----eEEEEeccCCCchhHHHHHHHHHHcC
Q 012138 378 RGL-----FNAVEFDKTALPVSAYDICLKMKERG 406 (470)
Q Consensus 378 ~g~-----~~~~~~~~~~~~~~~~~~~~~l~~~G 406 (470)
... ++.+.+... ....++++.|....
T Consensus 326 ~~~~~~~li~~~~l~~~---~~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 326 YNDKRTDIIQAIKFNDE---KKLIDFIKGIQTAS 356 (427)
T ss_dssp TTSCCSSSEEEEECSSH---HHHHHHHHHHHHTC
T ss_pred CCCCCceEEEEEeCCCH---HHHHHHHHHhcccc
Confidence 333 777766533 36778999988763
No 228
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.76 E-value=2.8e-17 Score=164.13 Aligned_cols=246 Identities=13% Similarity=0.128 Sum_probs=162.5
Q ss_pred cHHHHHHHHhhhhCCCeEEe---cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEc-cCccccccc----------h
Q 012138 118 KFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLA----------A 183 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~~v~~---~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~-~~yhg~~~~----------~ 183 (470)
.+.++++.+++++|.+..++ ++||++|+..++..+.+ +|+ .|++.. +.|++.... .
T Consensus 74 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~---------pGD-~Vl~~~~~~y~~~~~~~g~~~~~~~~~ 143 (427)
T 3i16_A 74 GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLR---------PGN-TMLSVCGEPYDTLHDVIGITENSNMGS 143 (427)
T ss_dssp HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCC---------TTC-EEEESSSSCCGGGHHHHTCSCCCSSCC
T ss_pred HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhC---------CCC-EEEEeCCCccHHHHHHHhccccchHHH
Confidence 46889999999999888777 89999999999887654 565 777777 776544311 1
Q ss_pred hcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEcc----ccCCCccccCChhhHHHHHHHH
Q 012138 184 ISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEP----IQGEAGVIIPPDGYLKAVRDLC 254 (470)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~ep----i~n~~G~~~~~~~~l~~l~~l~ 254 (470)
+...+ . ....++. .|+++|+++++++ +++++|++++ ++||+|.+.+ +++|.++|
T Consensus 144 l~~~G---~---------~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~i~d----l~~i~~la 206 (427)
T 3i16_A 144 LKEFG---I---------NYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALLIED----IKSIVDCV 206 (427)
T ss_dssp TGGGT---C---------EEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCCHHH----HHHHHHHH
T ss_pred HHHcC---C---------EEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcccHHH----HHHHHHHH
Confidence 11111 0 1122222 3899999999831 2799999988 8999999887 99999999
Q ss_pred Hh--cCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCC-cceeEEEecHHHHhhcCcCCccCCCC--CC
Q 012138 255 SK--YNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLADKEVMLCIQPGEHGSTFG--GN 327 (470)
Q Consensus 255 ~~--~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~-~~ig~v~~~~~~~~~~~~~~~~~t~~--~~ 327 (470)
++ ||+++|+||+|+.+....... ..+. |++ |++|.++|+. .+.|++++++++++.++.......++ ..
T Consensus 207 ~~~~~g~~livD~a~~~~~~~~~p~---~~ga--Div~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~ 281 (427)
T 3i16_A 207 KNIRKDIICFVDNCYGEFMDTKEPT---DVGA--DLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECG 281 (427)
T ss_dssp HHHCTTSEEEEECTTTTTSSSSCGG---GGTC--SEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCC
T ss_pred HHhCCCCEEEEECCCccccccCCcc---ccCC--eEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCC
Confidence 99 999999999998442222111 1233 554 8899998642 26789999999998876421111111 11
Q ss_pred H-HH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce-----eEEEEeccCCCchhHHHHHH
Q 012138 328 P-LA-SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-----FNAVEFDKTALPVSAYDICL 400 (470)
Q Consensus 328 ~-~~-~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~ 400 (470)
+ +. +..+...++.+ +...++..+++.++.+.|++++. ...++... ++.+.+... ....+|++
T Consensus 282 ~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~------~V~p~~~~~~~~~i~~i~l~~~---~~~~~f~~ 350 (427)
T 3i16_A 282 STFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGF------EVMPKYDEKRSDIIQSIKFNDK---DKLIEFCK 350 (427)
T ss_dssp CCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTC------EEESCTTSCCSSSCEEEECSSH---HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC------eecCCCCCCCccEEEEEEECCH---HHHHHHHH
Confidence 1 22 33333333322 45667777788888888877532 22223333 777777643 36788999
Q ss_pred HHHHcC
Q 012138 401 KMKERG 406 (470)
Q Consensus 401 ~l~~~G 406 (470)
.|....
T Consensus 351 ~l~~~~ 356 (427)
T 3i16_A 351 GIQTGS 356 (427)
T ss_dssp HHHHTC
T ss_pred HHhhcC
Confidence 998874
No 229
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.74 E-value=1.3e-16 Score=170.33 Aligned_cols=305 Identities=13% Similarity=0.054 Sum_probs=187.0
Q ss_pred HHHHHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC
Q 012138 119 FPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 197 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 197 (470)
..++++.+++++|.+.. +++||+++|+.+++..+.. +|+ .|++..++| .+...++...+..... .
T Consensus 207 v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~---------~GD-~Vlv~~~~h-~s~~~~~~~~G~~~v~---v 272 (755)
T 2vyc_A 207 FGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMT---------DND-VVVVDRNCH-KSIEQGLMLTGAKPVY---M 272 (755)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCC---------TTC-EEEEESSCC-HHHHHHHHHHCCEEEE---E
T ss_pred HHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcC---------CCC-EEEECCCch-HHHHHHHHHcCCEEEE---E
Confidence 45677788888887764 5566667899999987754 455 788888885 3333333333321110 1
Q ss_pred CCCCCeeee--cCC----CHHHHHHHHHhcCC-------CeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 198 PLLPGHLKV--DFG----DITALEKIFKESGD-------QIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 198 ~~~~~~~~~--~~~----d~~~Le~~l~~~~~-------~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
+...+...+ +.. |+++|++++++++. ++++++ ++| |++|.+.+ +++|.++|++||++||+
T Consensus 273 ~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~~~liv 346 (755)
T 2vyc_A 273 VPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTSDRLHF 346 (755)
T ss_dssp CCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTCSEEEE
T ss_pred eCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcCCEEEE
Confidence 100000000 000 79999999976321 123555 554 68999998 99999999999999999
Q ss_pred eccccCC-cccCCcccccc-CC--CC---cc---eeeccccccCCCcceeEEEecHH--HH--hhcCc-CCccCCCCCCH
Q 012138 264 DEIQSGL-ARSGRMLASDW-EE--VR---PD---MVILGKALGGGVIPVSAVLADKE--VM--LCIQP-GEHGSTFGGNP 328 (470)
Q Consensus 264 Dev~~g~-g~~G~~~~~~~-~~--~~---pd---i~s~sK~l~gG~~~ig~v~~~~~--~~--~~~~~-~~~~~t~~~~~ 328 (470)
||+|++. .....+-.... .+ .+ +. +.|++|+++|-- ..|+++++++ .. ..+.. .....+.+++.
T Consensus 347 DeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~-~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~ 425 (755)
T 2vyc_A 347 DEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS-QASYIHVREGRGAINFSRFNQAYMMHATTSPLY 425 (755)
T ss_dssp ECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCT-TCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCH
T ss_pred ECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcC-CeeeeeecCcccccCHHHHHHHHHHhCCCCHHH
Confidence 9999842 22111000111 22 11 11 237889877432 3566666543 11 11111 01222345778
Q ss_pred HHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhC---CC-ceE-----EEec-------------------
Q 012138 329 LASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQF---PN-YVK-----EVRG------------------- 377 (470)
Q Consensus 329 ~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~---p~-~~~-----~~~~------------------- 377 (470)
+.+++..++++.+.. +++.++..++.+++++.|+++...+ .. ++. .+.+
T Consensus 426 ~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (755)
T 2vyc_A 426 AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTT 505 (755)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccc
Confidence 888888888887765 3578888999999999998875410 00 011 1100
Q ss_pred --------------------cc------eeEEEEecc-CC------CchhHHHHHHHHHHcCceeccCCCCEEEEecCCC
Q 012138 378 --------------------RG------LFNAVEFDK-TA------LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLS 424 (470)
Q Consensus 378 --------------------~g------~~~~~~~~~-~~------~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~ 424 (470)
.| ..+.+.+.. .. .+.++..+.+.|.++||.+...+.+.+|++++..
T Consensus 506 ~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~~~~g 585 (755)
T 2vyc_A 506 VQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMG 585 (755)
T ss_dssp CGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEECCTT
T ss_pred hhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCCCeEEEEECCC
Confidence 11 122332321 00 1245688999999999998766789999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccc
Q 012138 425 ISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 425 ~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.|++++++++++|.++.+ ..
T Consensus 586 ~t~~~~~~l~~al~~~~~-~~ 605 (755)
T 2vyc_A 586 VTRGKWGTLVNTLCSFKR-HY 605 (755)
T ss_dssp CCTTTTHHHHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHH-hh
Confidence 999999999999999887 55
No 230
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.73 E-value=3.9e-17 Score=160.21 Aligned_cols=315 Identities=10% Similarity=-0.000 Sum_probs=191.1
Q ss_pred CCCCHHHHHHHHHHHHHccccCCCC---C------CCcHHHHHHHHhhhhCCC---eEEe-cCChhHHHHHHHHHHHHhc
Q 012138 90 GHCHPKIMKALQEQAEKLTLSSRAF---Y------NDKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWG 156 (470)
Q Consensus 90 G~~~p~v~~a~~~~~~~~~~~~~~~---~------~~~~~~l~~~l~~~~~~~---~v~~-~~sGteA~~~al~~~~~~~ 156 (470)
+..+++|.+++.+.+..+...+.+. . .+..++.++.++++++.+ +|+| ++|||+++++++..+...
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~- 100 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL- 100 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG-
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC-
Confidence 4478999999998876433221111 1 123456677888888753 5788 589999999999866531
Q ss_pred hhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCC
Q 012138 157 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGE 236 (470)
Q Consensus 157 ~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~ 236 (470)
. +|+ .++....+.++.... ......+....+.+...+ ... ++++++..+++ ++++|.+....+.
T Consensus 101 --~----~Gd-~v~~~~~g~~~~~~~--~~a~~~G~~~~~~~~~~~-~~~---~~~~~~~~i~~---~t~lV~~~h~et~ 164 (377)
T 3e77_A 101 --K----AGR-CADYVVTGAWSAKAA--EEAKKFGTINIVHPKLGS-YTK---IPDPSTWNLNP---DASYVYYCANETV 164 (377)
T ss_dssp --S----TTC-EEEECCCSHHHHHHH--HHHTTTSEEEECSCCCSS-SCS---CCCGGGCCCCT---TCSCEEEESEETT
T ss_pred --C----CCC-eEEEEECCHHHHHHH--HHHHHhCCceEEeccCCC-cCC---CCChHHhccCC---CccEEEEeCccCc
Confidence 0 245 444433333333211 111111111111111100 011 34445444433 7788877665677
Q ss_pred CccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC
Q 012138 237 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ 316 (470)
Q Consensus 237 ~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~ 316 (470)
+|.+.| + +|+++|+++++|.+|+ +| ...+..+.+++ ...+--|.+| .. .+|+++.++++.+.+.
T Consensus 165 tG~~~p----i-----i~~~~~~~~~vD~~q~-~g--~~~id~~~~~~--~~~s~~K~~g-p~-G~g~l~~~~~~l~~~~ 228 (377)
T 3e77_A 165 HGVEFD----F-----IPDVKGAVLVCDMSSN-FL--SKPVDVSKFGV--IFAGAQKNVG-SA-GVTVVIVRDDLLGFAL 228 (377)
T ss_dssp TTEECS----S-----CCCCTTCCEEEECTTT-TT--SSCCCGGGCSE--EEEEGGGTTS-CT-TCEEEEEETTSCSCCC
T ss_pred hheEch----h-----hhccCCCEEEEEcccc-cC--CCCCchhhcCE--EEEecccccC-CC-ccEEEEEcHHHHhhcc
Confidence 899997 4 5889999999999998 22 12233444442 2334448884 44 7888999888765543
Q ss_pred cC-----------CccCCC-CCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceE-EE---e
Q 012138 317 PG-----------EHGSTF-GGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVK-EV---R 376 (470)
Q Consensus 317 ~~-----------~~~~t~-~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~-~~---~ 376 (470)
+. ....++ +++.....+..++|+++.+ +.+.++.+++.+++++.|+++. .+. .. .
T Consensus 229 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~-----g~~~~~~~~~ 303 (377)
T 3e77_A 229 RECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ-----GFYVCPVEPQ 303 (377)
T ss_dssp TTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST-----TSEECCSCGG
T ss_pred CCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC-----CceecCCCHH
Confidence 21 112233 4677778888889998765 3466777778888888877642 121 11 1
Q ss_pred cc-ceeEEEEeccCCCchh-HHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 377 GR-GLFNAVEFDKTALPVS-AYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 377 ~~-g~~~~~~~~~~~~~~~-~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+ +..+.+.++.-....+ ...+.+.|.++||.+.++. .+.+|+++...+|+|||+.+++.|+++++
T Consensus 304 ~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~ 373 (377)
T 3e77_A 304 NRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLE 373 (377)
T ss_dssp GBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 12 3346666654210011 2467788888999987763 35799999999999999999999999987
No 231
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.72 E-value=1.8e-17 Score=163.46 Aligned_cols=308 Identities=9% Similarity=-0.009 Sum_probs=184.1
Q ss_pred CCHHHHHHHHHHHHHccccCCC---------CCCCcHHHHHHHHhhhhCCC---eEEe-cCChhHHHHHHHHHHHHhchh
Q 012138 92 CHPKIMKALQEQAEKLTLSSRA---------FYNDKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~---~v~~-~~sGteA~~~al~~~~~~~~~ 158 (470)
.+|+|++++.+.+......+.+ -.....++.++.++++++.+ +|+| |+|||+++++++..+..
T Consensus 38 ~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~---- 113 (386)
T 3qm2_A 38 LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLG---- 113 (386)
T ss_dssp CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCT----
T ss_pred CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccC----
Confidence 5799999998776542211110 12345677888899988753 5788 69999999999986643
Q ss_pred cccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCC
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGE 236 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~ 236 (470)
++++.+++..+. ++.... ......+ ...+.+.. .....+ ++++++.++++ ++++|++....+.
T Consensus 114 -----~gd~v~~~~~~~-~~~~~~--~~a~~~G-~v~~v~~~~~~~G~~~---~~~~~~~~l~~---~t~lV~~~h~et~ 178 (386)
T 3qm2_A 114 -----DKTTADYVDAGY-WAASAI--KEAKKYC-APQIIDAKITVDGKRA---VKPMREWQLSD---NAAYLHYCPNETI 178 (386)
T ss_dssp -----TCCEEEEEESSH-HHHHHH--HHHTTTS-EEEEEECEEEETTEEE---ECCGGGCCCCT---TCSCEEECSEETT
T ss_pred -----CCCeEEEEeCCH-HHHHHH--HHHHHhC-CeEEEecCcccCCCCC---CchHHHhhcCC---CCcEEEEECCcCC
Confidence 466444444443 332211 1111100 01011110 001111 45566665554 7888887776777
Q ss_pred Cccc-cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhc
Q 012138 237 AGVI-IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI 315 (470)
Q Consensus 237 ~G~~-~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~ 315 (470)
+|.+ .| +++|. +|+++++|.+|+ +| ...+..+.+++ +..+--|.+| .. .+|++++++++.+.+
T Consensus 179 tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g--~~pidv~~~~~--~~~s~hK~lG-P~-G~g~l~v~~~~~~~~ 242 (386)
T 3qm2_A 179 DGIAIDE----TPDFG-----PEVVVTADFSST-IL--SAPLDVSRYGV--IYAGAQKNIG-PA-GLTLVIVREDLLGKA 242 (386)
T ss_dssp TTEECCC----CCCCC-----TTCCEEEECTTT-TT--SSCCCGGGCSE--EEEETTTTTC-CT-TEEEEEEEGGGCSCC
T ss_pred cCEecCc----hhhhc-----CCCEEEEEcccc-cC--CCCCCccccCE--EEEecccccC-CC-ccEEEEECHHHHhhh
Confidence 8996 65 55543 799999999998 22 11233444442 4445559884 44 789999998886544
Q ss_pred CcCC-----------ccCCC-CCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE---Ee
Q 012138 316 QPGE-----------HGSTF-GGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKE---VR 376 (470)
Q Consensus 316 ~~~~-----------~~~t~-~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~---~~ 376 (470)
.+.. .+..+ +.|..++++..++++++.+ +.+.++.+++.+++++.|+++. ++.. ..
T Consensus 243 ~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~-----~~~~~~~~~ 317 (386)
T 3qm2_A 243 HESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-----FYRNDVAQA 317 (386)
T ss_dssp CTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS-----SEECCBCGG
T ss_pred cccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-----CcccCCCHH
Confidence 4210 11122 4566677777788887655 3466677778888888887652 2111 11
Q ss_pred cc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 377 GR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 377 ~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+ ...+.+.++... .+ ..+...|.++||.+..+. .+.+|+++...+|+|||+++++.|+++.+
T Consensus 318 ~rs~~iv~f~~~~~~--~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~ 383 (386)
T 3qm2_A 318 NRSRMNVPFQLADNT--LD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFER 383 (386)
T ss_dssp GBCSSEEEEEESSGG--GH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCceEEEEECCCcc--cc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 12 245666665322 24 677888999999987663 25699999999999999999999999887
No 232
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.70 E-value=4.6e-16 Score=152.03 Aligned_cols=312 Identities=11% Similarity=0.046 Sum_probs=190.2
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC----C-----CCcHHHHHHHHhhhhCC--C-eEEe-cCChh
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF----Y-----NDKFPVFAERLTSMFGY--D-MVLP-MNTGA 142 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~----~-----~~~~~~l~~~l~~~~~~--~-~v~~-~~sGt 142 (470)
+++.|..+... .+|+|.+++.+.+..+...+.+. + ....++.++.++++++. + +|+| |+|||
T Consensus 5 ~~~~f~pgpt~-----~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T 79 (361)
T 3m5u_A 5 RKINFSAGPST-----LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGAS 79 (361)
T ss_dssp CCEECCSSSCC-----CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred ceEeecCCCCC-----CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHH
Confidence 44556666443 56999999998775432211110 1 13345667788888875 2 6777 99999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc--hhcccCCcccccCCCCCCCCe-eeecCCCHHHHHHHHH
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMSCDNEAIRGFGPLLPGH-LKVDFGDITALEKIFK 219 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~Le~~l~ 219 (470)
+++++++..+. ++++..++..+.| +.... +...+.. ..+.+...+. ..+ ++++ + |+
T Consensus 80 ~a~n~~~~~~~----------~~~~~~~i~~~~~-~~~~~~~a~~~G~~----v~~~~~~~~g~~~~---~~~~-~--l~ 138 (361)
T 3m5u_A 80 LQFAMIPMNLA----------LNGVCEYANTGVW-TKKAIKEAQILGVN----VKTVASSEESNFDH---IPRV-E--FS 138 (361)
T ss_dssp HHHHHHHHHHC----------CSSCEEEEECSHH-HHHHHHHHHHTTCC----EEEEEECTTTTSCS---CCCC-C--CC
T ss_pred HHHHHHHHhcC----------CCCeEEEEeCCHH-HHHHHHHHHHcCCc----eEEEecccCcCCCc---CChh-h--cC
Confidence 99999998653 2443433344333 22111 1111110 0000100000 000 2333 2 44
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGG 297 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~g 297 (470)
+ ++++|.+....+.+|.+.|. +++ +|+++++|.+|+ +|. ..+..+ + .|++++| |.+|
T Consensus 139 ~---~t~lv~~~~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~--~~id~~--~--~d~~~~s~~K~~g- 197 (361)
T 3m5u_A 139 D---NADYAYICSNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFS--RKVDFS--N--IALFYGGVQKNAG- 197 (361)
T ss_dssp T---TSSEEEEESEETTTTEECSS---------CCC-CSSCEEEECGGG-TTS--SCCCCT--T--EEEEEEETTTTSS-
T ss_pred C---CCCEEEEeCCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCC--CCCCcc--c--CCEEEEechhccC-
Confidence 3 67777776556677999751 444 499999999998 221 112222 2 4777666 8884
Q ss_pred CCcceeEEEecHHHHhhcCc----CC--------ccCC-CCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHH
Q 012138 298 GVIPVSAVLADKEVMLCIQP----GE--------HGST-FGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQH 360 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~----~~--------~~~t-~~~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~ 360 (470)
.. .+|+++.++++.+.+.+ .. ...+ .+.|..++.++.++++++.+. .+.++.+++.+++++.
T Consensus 198 p~-G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~ 276 (361)
T 3m5u_A 198 IS-GLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYEC 276 (361)
T ss_dssp CT-TCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CC-ccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 44 78999999988766533 10 1223 346777888888899987653 4667777788888888
Q ss_pred HHHHHhhCCCceEEE-e--c-cceeEEEEecc-CCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHH
Q 012138 361 LFKIQQQFPNYVKEV-R--G-RGLFNAVEFDK-TALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 361 L~~l~~~~p~~~~~~-~--~-~g~~~~~~~~~-~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~ 433 (470)
|+++.. ++... . . ...++.+.++. .. .+ .++...|.++||.+.++. .+.+|+++...+|++||+++
T Consensus 277 L~~~~g----~~~~~~~~~~rs~~ivsf~~~~~~~--~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l 349 (361)
T 3m5u_A 277 IDLSNG----FYKGHADKKDRSLMNVSFNIAKNKD--LE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTL 349 (361)
T ss_dssp HHTSTT----SEEESSCGGGBCSSEEEEEESSCTT--HH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHH
T ss_pred HHHCCC----eeeccCCHHHcCCeEEEEECCCchh--hh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHH
Confidence 876531 11111 1 1 13456666653 22 23 478889999999987763 25699999999999999999
Q ss_pred HHHHHHHHh
Q 012138 434 SKALHDVLE 442 (470)
Q Consensus 434 ~~~l~~~l~ 442 (470)
++.|+++.+
T Consensus 350 ~~al~~~~~ 358 (361)
T 3m5u_A 350 CEFMKEFQG 358 (361)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 233
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.70 E-value=3.8e-15 Score=156.57 Aligned_cols=302 Identities=11% Similarity=0.024 Sum_probs=192.8
Q ss_pred CCcHHHHHHHHhhhhCCCeEEecCCh-hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 116 NDKFPVFAERLTSMFGYDMVLPMNTG-AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~~~sG-teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
.....++++.+++++|.++.+++++| +.||.+++.++.. +|+ .|++..++ |.+...++.+++......
T Consensus 194 ~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~---------pGD-~VLv~r~~-H~S~~~~l~lsGa~pv~v 262 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAP---------AGS-TILIDRNC-HKSLTHLMMMSDVTPIYF 262 (715)
T ss_dssp BTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCC---------TTC-EEEEESSC-CHHHHHHHHHSCCEEEEE
T ss_pred cHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCC---------CCC-EEEECCCc-cHHHHHHHHHcCCEEEEE
Confidence 34477899999999999987776666 6899888887754 455 78888887 555555555554321111
Q ss_pred CCCCCCCCeeeecCC------CHHHHHHHHHhcCCCeE---EEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEe
Q 012138 195 GFGPLLPGHLKVDFG------DITALEKIFKESGDQIA---GFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~------d~~~Le~~l~~~~~~~~---~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~D 264 (470)
+...+...+.++ |+++|++++++++ +++ +++ ++| |++|.+.+ +++|.++|++++ ||+|
T Consensus 263 ---~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~-~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livD 330 (715)
T 3n75_A 263 ---RPTRNAYGILGGIPQSEFQHATIAKRVKETP-NATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFD 330 (715)
T ss_dssp ---CCCBCTTCCBCCCCGGGGSHHHHHHHHHHST-TCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEE
T ss_pred ---eccccccccccCcccccCCHHHHHHHHhhCc-CccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEc
Confidence 000011112222 7999999998753 222 455 555 89999998 999999998774 7999
Q ss_pred ccccC-C--cccCCc-cccccCCCCcce-----eeccccccCCCcceeEEEecHHHH-hhcCc-CCccCCCCCCHHHHHH
Q 012138 265 EIQSG-L--ARSGRM-LASDWEEVRPDM-----VILGKALGGGVIPVSAVLADKEVM-LCIQP-GEHGSTFGGNPLASAV 333 (470)
Q Consensus 265 ev~~g-~--g~~G~~-~~~~~~~~~pdi-----~s~sK~l~gG~~~ig~v~~~~~~~-~~~~~-~~~~~t~~~~~~~~aa 333 (470)
|+|++ + +..++. .+.. .+..+|+ .|++|++++-- ..|++.++.++. +.+.. .....+.+.+++.+++
T Consensus 331 EAH~~~~~f~~~~~~~~al~-~g~~aD~vii~~~S~hKtL~glt-qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~As 408 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAFS-QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVAS 408 (715)
T ss_dssp CTTCTTGGGSGGGTTSSTTS-SSCCTTCEEEEEECHHHHSSCCT-TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHH
T ss_pred cccccccccCCccccccccc-cCcCCCEEEEEEecccccccCCC-CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHH
Confidence 99983 3 221111 1111 1212464 47889987521 345666654321 11111 1223345688999999
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCc-eEEEec------------------------cce-----
Q 012138 334 AIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNY-VKEVRG------------------------RGL----- 380 (470)
Q Consensus 334 a~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~-~~~~~~------------------------~g~----- 380 (470)
..++++.++. +++++++.++..++++.|+++....+++ +..... .+.
T Consensus 409 ldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp 488 (715)
T 3n75_A 409 TETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP 488 (715)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCC
Confidence 9999988863 5688999999999999999886421110 010000 000
Q ss_pred -eEEEEecc-C--C----CchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 381 -FNAVEFDK-T--A----LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 381 -~~~~~~~~-~--~----~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
=+.+.... + . .+..+..+.+.|+++||.+--.+.+.+-+.++...|++++++++++|.++-+
T Consensus 489 ~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 489 IKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp TEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 01111111 0 0 1346778999999999998877788888888889999999999999988765
No 234
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.61 E-value=8.8e-14 Score=136.25 Aligned_cols=295 Identities=13% Similarity=0.057 Sum_probs=181.9
Q ss_pred CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc-ccccCCCCCCCCeeeecCCCH
Q 012138 133 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFGDI 211 (470)
Q Consensus 133 ~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 211 (470)
...+++|++|.++.+++.++.+.. . ++.+.||....+ |-+...++.+.+-. .+-.+. ...+...+ |+
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~~-----r-pg~d~VIvpRn~-HKSv~kAliL~Gl~Pv~V~p~--~d~~~~~i---d~ 202 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRHK-----R-PKAKYIIWPRID-QKSCFKSMITAGFEPVVIENV--LEGDELRT---DL 202 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHH-----C-TTCCEEEEECCC-CHHHHHHHHHTTCEEEEECEE--EETTEEEE---CH
T ss_pred CcEEEECcHHHHHHHHHHHHcCcc-----c-CCCCEEEEecch-HHHHHHHHHHcCCeEEEEeee--ecccccCC---CH
Confidence 358888999988877777665521 0 233467666655 99888888776642 221110 00112344 89
Q ss_pred HHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc---cccccCCCCcc
Q 012138 212 TALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM---LASDWEEVRPD 287 (470)
Q Consensus 212 ~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~---~~~~~~~~~pd 287 (470)
++||++|++++ +.+.+|+.++.++..+.+.+ +++|.++|++||+++++||+|...-..... .+++ +| ..|
T Consensus 203 e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~-~G-rAD 276 (501)
T 3hl2_A 203 KAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGAR-VG-RID 276 (501)
T ss_dssp HHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHH-HS-CCC
T ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHh-cC-CCc
Confidence 99999999875 46667777764554556676 999999999999999999999853211111 1112 23 358
Q ss_pred eeecc--ccccCCCcceeEEE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Q 012138 288 MVILG--KALGGGVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 288 i~s~s--K~l~gG~~~ig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L 361 (470)
+++.| |.+--.+ +.+.++ -++++++.+..... ++.+++|. +..+.++..+.. .++.++..++.++|++.|
T Consensus 277 ~vVqS~HK~llvpI-GG~ii~~~d~e~l~~~~~~yP-Gr~S~Sps--ldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L 352 (501)
T 3hl2_A 277 AFVQSLDKNFMVPV-GGAIIAGFNDSFIQEISKMYP-GRASASPS--LDVLITLLSLGSNGYKKLLKERKEMFSYLSNQI 352 (501)
T ss_dssp EEEEEHHHHHCCCS-SCEEEEESCHHHHHHHHHTSC-SCBCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccceeec-CceEEEeCCHHHHHHHHHhCC-CCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666 6543211 212232 35666666543221 22223332 223333333333 567788888999999999
Q ss_pred HHHHhhCCCceEEEeccceeEEEEeccCCC--chhHHHHHHHHHHcCce---e-ccCC--------------------CC
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERGIL---A-KPTH--------------------DT 415 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~---~-~~~~--------------------~~ 415 (470)
+++...++..+-..+....-+++.+..... +.....+-..|..++|. + .++. ..
T Consensus 353 ~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~ 432 (501)
T 3hl2_A 353 KKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCA 432 (501)
T ss_dssp HHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSC
T ss_pred HHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCch
Confidence 998876653333334445555565543211 22466788888888764 2 2221 46
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCCC
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 450 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~ 450 (470)
++-.+....++++||+.++++|++++. ++++...
T Consensus 433 yl~~a~aiG~~~~~v~~~~~~l~~~~~-~~~~~~~ 466 (501)
T 3hl2_A 433 YLNAASAIGMKMQDVDLFIKRLDRCLK-AVRKERS 466 (501)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHH-HHHC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHhhc
Confidence 788888889999999999999999998 7765444
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.58 E-value=1.8e-13 Score=135.76 Aligned_cols=307 Identities=12% Similarity=0.058 Sum_probs=177.6
Q ss_pred HHHHHHHHhhhhCCCe---EEecCChh-HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 119 FPVFAERLTSMFGYDM---VLPMNTGA-EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~---v~~~~sGt-eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
...+..++.+.+|... .++++++| .++.+++.+++... +++ +.||+... -|.+...++.+.+-.....
T Consensus 100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~------~~~-~~viv~r~-aHkSv~kAl~l~Gl~p~~v 171 (450)
T 3bc8_A 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKR------PKA-KYIIWPRI-DQKSCFKSMVTAGFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHC------TTC-CEEEEECC-CCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhh------cCC-CEEEEECC-cHHHHHHHHHHcCCeeEEE
Confidence 3566777777777543 58899998 55555555655421 013 35666665 4999888887766422211
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 195 GFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
.-.+ ..+...+ |+++|+++|++++ +.+.+|+..|.++..|.+.| +++|.++|++||+++++|++|.+..+.
T Consensus 172 ~~~~-~~~~~~i---d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~ 243 (450)
T 3bc8_A 172 ENVL-EGDELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSK 243 (450)
T ss_dssp CCEE-ETTEEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred Eeee-cCccCCc---CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhh
Confidence 0000 0112333 8999999998865 45677778776665678887 999999999999999999999863221
Q ss_pred CCccccccCCC-Ccceeecc--ccccCCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhH
Q 012138 274 GRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKL 346 (470)
Q Consensus 274 G~~~~~~~~~~-~pdi~s~s--K~l~gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~ 346 (470)
...+..+.+.. ..|.+++| |.+...+ ..+++.. +++..+.+.....+ ..+.+| +.. .+.++..+.. .++
T Consensus 244 ~~~l~~~a~~~~~AD~~v~S~HK~l~a~~-~~~~l~~rd~~~~~~~~~~~~g-~~s~Sp-sL~-l~~~l~~~G~~g~~~~ 319 (450)
T 3bc8_A 244 CMHLIQQGARVGRIDAFVQSLDKNFMVPV-GGAIIAGFNEPFIQDISKMYPG-RASASP-SLD-VLITLLSLGCSGYRKL 319 (450)
T ss_dssp HHHHHHHHHHHSCCCEEEEEHHHHHSCCS-SCEEEEESCHHHHHHHHHHSCS-CBCSHH-HHH-HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHhcccCCCEEEECCccCCCchh-ccEEEEecCHHHHHHHHHHhhc-CCcccH-HHH-HHHHHHHHHHHHHHHH
Confidence 11110011111 34777665 7776544 5556665 55555555332211 111233 222 2222222222 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccC--CCchhHHHHHHHHHHcCc---eec-----------
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT--ALPVSAYDICLKMKERGI---LAK----------- 410 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~l~~~Gv---~~~----------- 410 (470)
.++..++.+++++.|+++...+.-.+......+.-..+.+..- ....+..++.-.+...|+ -+.
T Consensus 320 i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~ 399 (450)
T 3bc8_A 320 LKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGH 399 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTE
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchhHH
Confidence 4445777888999998887554311211111111122222210 001255666666666552 222
Q ss_pred ----------cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 411 ----------PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 411 ----------~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.....++-+..++..+++++++++++|++++. +.+
T Consensus 400 ~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~-~~~ 444 (450)
T 3bc8_A 400 TFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN-IVR 444 (450)
T ss_dssp EEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 22367788888899999999999999999987 654
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.41 E-value=8.6e-12 Score=121.74 Aligned_cols=282 Identities=15% Similarity=0.103 Sum_probs=165.7
Q ss_pred HHhhhhCCCeE-----EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc--------hhcccCCcc
Q 012138 125 RLTSMFGYDMV-----LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--------AISMSCDNE 191 (470)
Q Consensus 125 ~l~~~~~~~~v-----~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~--------~~~~~~~~~ 191 (470)
+..++++.+.. +=..||+.||.+++.++.+ ||| .|+.++.. ||..+. .+..++. .
T Consensus 108 rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~---------PGD-~ilg~~l~-~GGHltHg~~~~~~~v~~sg~-~ 175 (490)
T 3ou5_A 108 RALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ---------PHD-RIMGLDLP-DGGHLTHGYMSDVKRISATSI-F 175 (490)
T ss_dssp HHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC----------CC-CEECBC--------------------------
T ss_pred HHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC---------CCC-EEEecccC-CCCcccccccCCCcccccccc-c
Confidence 44566787653 4456999999999988876 677 67776655 333221 1112221 0
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL 270 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~ 270 (470)
+....-++.++...+ |.+.+++...++ ++++||+-. +..-...| +++++++|++.|++|++|-+|. |+
T Consensus 176 ~~~~~Y~vd~~t~~I---Dyd~~~~~A~~~--kPklIi~G~--SaY~r~id----~~~~reIAd~vGA~Lm~DmAHiaGL 244 (490)
T 3ou5_A 176 FESMPYKLNPKTGLI---DYNQLALTARLF--RPRLIIAGT--SAYARLID----YARMREVCDEVKAHLLADMAHISGL 244 (490)
T ss_dssp ----CBCEETTTTEE---CHHHHHHHHHHH--CCSEEEECC--SSCCSCCC----HHHHHHHHHHHTCEEEEECGGGHHH
T ss_pred ccccccccCCCCCcc---cHHHHHHHHhhc--CCCeEEECC--ccCccccC----HHHHHHHHhhcccEEEechhhhhhh
Confidence 100000111222334 899999999887 778888754 22234455 9999999999999999999998 66
Q ss_pred cccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHH---------------HHhhcCcCCccCCCCCCHH-HHH
Q 012138 271 ARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE---------------VMLCIQPGEHGSTFGGNPL-ASA 332 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~---------------~~~~~~~~~~~~t~~~~~~-~~a 332 (470)
.-.|.+- +.+.. .|++|.+ |+|.|. |-|.|+++++ +.+.+...-..+..+++-+ .+|
T Consensus 245 VA~g~~p--sP~~~-ADvVTtTTHKTLrGP--rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IA 319 (490)
T 3ou5_A 245 VAAKVIP--SPFKH-ADIVTTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIA 319 (490)
T ss_dssp HHTTSSC--CGGGT-CSEEEEESSSTTCSC--SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHH
T ss_pred hcccccC--Ccccc-ceEEeccccccccCC--CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHH
Confidence 4444332 11222 4888655 888865 7777887652 3333322112222333323 333
Q ss_pred HHHHHHHH-Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec--cceeEEEEeccCCCchhHHHHHHHHHHcCc
Q 012138 333 VAIASLDV-IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMKERGI 407 (470)
Q Consensus 333 aa~a~l~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 407 (470)
+-..++.. +.. ..+.+++.++++.|.+.|.+.+ +..+.+ ...++++.+... +.+..+..+.|.+.||
T Consensus 320 AkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G------~~vvsGgTdnHlvLvDl~~~--g~tG~~ae~~Le~agI 391 (490)
T 3ou5_A 320 AVAVALKQACTPMFREYSLQVLKNARAMADALLERG------YSLVSGGTDNHLVLVDLRPK--GLDGARAERVLELVSI 391 (490)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGGGSCSSSEEEEECGGG--TCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCC------CeeecCCCCceEEEEecccc--CCCHHHHHHHHHHcCc
Confidence 32233443 332 4577778888888888887743 333322 234556655432 2366777778888899
Q ss_pred eec----cC-----CCCEEEEecCC----CCCHHHHHHHHHHHHHHHh
Q 012138 408 LAK----PT-----HDTIVRLTPPL----SISSNELQEGSKALHDVLE 442 (470)
Q Consensus 408 ~~~----~~-----~~~~iR~~~~~----~~t~e~i~~~~~~l~~~l~ 442 (470)
.+. |. ...-|||..|. .+.++|++++.+.|.+++.
T Consensus 392 tvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 392 TANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp ECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 875 33 24579997653 4778999999999988775
No 237
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=68.18 E-value=4.3 Score=34.98 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=32.3
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
+-..++|+||-+.|+.|.... ++++.++|++||+.+|.
T Consensus 157 Gl~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 157 GLQPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp TSCSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 336789999986588898887 99999999999998875
No 238
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=56.66 E-value=14 Score=30.28 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=37.3
Q ss_pred CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH-HHHHhcCcE-EEEecccc
Q 012138 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR-DLCSKYNIL-MIADEIQS 268 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~-~l~~~~gil-lI~Dev~~ 268 (470)
+.+.|.++++++ ++..|++.-+.|+.|..-+.....+++. .+++++++. .++||-++
T Consensus 43 ~~~~l~~li~~~--~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDY--TIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTS--EEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHc--CCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 688999999886 7778887755666666543332334444 444556764 56698876
No 239
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=56.09 E-value=12 Score=32.67 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=31.4
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
+-..++|+||- .|+.|.... ++++.++|++||+.+|.
T Consensus 176 Gl~Pa~VicEi-~~ddG~mar----~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 176 NLVPITTICEM-MGDDGNAMS----KNETKRYAEKHNLIYLS 212 (227)
T ss_dssp TSCSEEEEEEE-BCTTSSBCC----HHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEE-eCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 34788999998 467798887 99999999999998885
No 240
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=55.35 E-value=14 Score=31.87 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=31.1
Q ss_pred CCCeEEEEEccc-cCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 222 GDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 222 ~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
+-..++|+||-+ .|+.|.... ++++.++|++||+.+|.
T Consensus 156 Gl~Pa~vicEiv~~~~dG~mar----~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 156 GLQPAGAICEIVSQKDEGSMAH----TDELRVFADEHGLALIT 194 (206)
T ss_dssp TSCSBEEEEEBBCSSSTTSBCC----HHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEEeeeCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 336788999884 557788886 99999999999999885
No 241
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=48.45 E-value=19 Score=31.36 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=30.5
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
-..++|+||-+ +..|.... ++++.++|++||+.+|.
T Consensus 166 l~Pa~vicEi~-~~dG~mar----~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 166 FKPAGVLCELT-NDDGTMAR----APECIEFANKHNMALVT 201 (217)
T ss_dssp SCSCEEEEEBB-CTTSSBCC----HHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEEe-CCCCCccC----HHHHHHHHHHcCCCEEE
Confidence 36789999874 77888887 99999999999998875
No 242
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=45.27 E-value=97 Score=28.12 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=57.9
Q ss_pred hCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC
Q 012138 130 FGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 209 (470)
Q Consensus 130 ~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
.|.+.++.+++.-+....++.++.++ ++....+...-+.|-..... ..-.
T Consensus 29 ~gV~~~v~~g~~~~~~~~~~~la~~~--------~~~~~~v~~~~GiHP~~~~~----------------------~~~~ 78 (287)
T 3rcm_A 29 AGVTQMLLTGTSLAVSEQALELCQQL--------DASGAHLFATAGVHPHDAKA----------------------WDTD 78 (287)
T ss_dssp TTEEEEEECCCSHHHHHHHHHHHHHH--------CTTSSSEEEEECCCGGGGGG----------------------CCTT
T ss_pred cCCeEEEEecCCHHHHHHHHHHHHhC--------CCCCceEEEEEEECcCcccc----------------------CCHH
Confidence 36777888777777788888888775 22111122223345322110 0001
Q ss_pred CHHHHHHHHHhcCCCeEEE--E-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEec
Q 012138 210 DITALEKIFKESGDQIAGF--L-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~v--i-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~De 265 (470)
+++.|++.+.. +++.+| + ++...+....-. ..+.+++..++|+++|.+|++=.
T Consensus 79 ~~~~l~~l~~~--~~vvaIGEiGLD~~~~~~~~~~-Q~~~F~~ql~lA~e~~lPv~iH~ 134 (287)
T 3rcm_A 79 SERQLRLLLSE--PRVRAVGECGLDFNRDFSPRPL-QEKALEAQLTLAAQLRLPVFLHE 134 (287)
T ss_dssp HHHHHHHHHTS--TTEEEEEEEEEETTTCSSCHHH-HHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhcC--CCeEEEEEeeeCCCcccCcHHH-HHHHHHHHHHHHHHhCCCEEEEc
Confidence 46778887754 255554 2 444221111111 35678888999999999888743
No 243
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=42.15 E-value=25 Score=30.81 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=30.7
Q ss_pred CCCeEEEEEccccCC-----------CccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 222 GDQIAGFLFEPIQGE-----------AGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 222 ~~~~~~vi~epi~n~-----------~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
+-..++|+||-+ |. .|.... ++++.++|++||+.+|.
T Consensus 165 Gl~PagVicEi~-~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 165 GKRPVAVISEIV-DDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVCT 212 (233)
T ss_dssp TCCSBEEEEEBE-ECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEeC-CCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 346789999974 56 688887 99999999999998885
No 244
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=37.78 E-value=56 Score=25.67 Aligned_cols=50 Identities=10% Similarity=0.242 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH---HHHHHHHHhcCcEEEEecc
Q 012138 212 TALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL---KAVRDLCSKYNILMIADEI 266 (470)
Q Consensus 212 ~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l---~~l~~l~~~~gillI~Dev 266 (470)
+-+++++.. +.++|++-. |.|+|...|+.+.+ ++|.+.|+--|+.|+ |-+
T Consensus 58 ei~~~Al~~---~A~~vIl~H-NHPSG~~~PS~~D~~~T~~l~~a~~ll~I~ll-DHi 110 (126)
T 2qlc_A 58 EIFKAAIRE---SAHSIILVH-NHPSGDVQPSNADKQVTSILKKAGDLLQIELL-DHV 110 (126)
T ss_dssp HHHHHHHHT---TCSEEEEEE-ECSSSCCSCCHHHHHHHHHHHHHHHHHTCEEE-EEE
T ss_pred HHHHHHHHc---CCcEEEEEe-cCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEe-eeE
Confidence 445777765 556677666 77999999988776 456666666676544 444
No 245
>4ggi_A UDP-2,3-diacylglucosamine pyrophosphatase LPXI; structural genomics, PSI-biology; HET: UDG; 2.52A {Caulobacter crescentus} PDB: 4ggm_X*
Probab=37.03 E-value=41 Score=30.63 Aligned_cols=41 Identities=12% Similarity=0.331 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccc-cCChhhHHHHHHHHHhcCcEEE
Q 012138 211 ITALEKIFKESGDQIAGFLFEPIQGEAGVI-IPPDGYLKAVRDLCSKYNILMI 262 (470)
Q Consensus 211 ~~~Le~~l~~~~~~~~~vi~epi~n~~G~~-~~~~~~l~~l~~l~~~~gillI 262 (470)
++.++.+.+. .+++|+++| +|++ .. -+++.+.|++||+.++
T Consensus 234 ~dti~~~~~a---g~~~ivi~~----g~si~~~----~~~~i~~a~~~gi~~~ 275 (283)
T 4ggi_A 234 VATIHRAARA---GLAGIVGEA----GRLLVVD----REAVIAAADDLGLFVL 275 (283)
T ss_dssp HHHHHHHHHT---TCCEEEEET----TBCEETT----HHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHc---CCeEEEEcC----CCcEEeC----HHHHHHHHHHcCCEEE
Confidence 5888888876 788998888 6666 34 6888999999999887
No 246
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=36.57 E-value=19 Score=26.11 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCcEEEEecccc
Q 012138 247 LKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~ 268 (470)
-.+|+++|++||++++.|..-+
T Consensus 29 A~~I~~~A~e~~VPi~e~~~LA 50 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIPLA 50 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 6899999999999999997654
No 247
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=35.07 E-value=1.5e+02 Score=27.46 Aligned_cols=105 Identities=8% Similarity=0.031 Sum_probs=59.8
Q ss_pred hCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCc--EEEEEccCccccccchhcccCCcccccCCCCCCCCeeeec
Q 012138 130 FGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA--IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD 207 (470)
Q Consensus 130 ~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~--~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (470)
.|.+.++.+++.-+....++.++.++ ++.. .| ...-++|-+..... .
T Consensus 64 aGV~~ii~~g~~~~~~~~~~~La~~~--------~~~~~~~v-~~~~GiHP~~~~~~----------------------~ 112 (325)
T 3ipw_A 64 NGLSHIIITSGCLNDFKKAIEIINKY--------QNLTNIKL-VTTIGVHPTRTNEL----------------------K 112 (325)
T ss_dssp TTEEEEEECCCSHHHHHHHHHHHHHH--------GGGCSSEE-EEEECCCGGGGGGG----------------------G
T ss_pred cCCcEEEEccCCHHHHHHHHHHHHHC--------CCcccceE-EEEEEECcchhhcC----------------------C
Confidence 37788888888788888888888875 2110 22 22333453321110 0
Q ss_pred CC-CHHHHHHHHHhcCCCeEEE--E-Ecccc-CCCccccCChhhHHHHHHHHHh-cCcEEEEecc
Q 012138 208 FG-DITALEKIFKESGDQIAGF--L-FEPIQ-GEAGVIIPPDGYLKAVRDLCSK-YNILMIADEI 266 (470)
Q Consensus 208 ~~-d~~~Le~~l~~~~~~~~~v--i-~epi~-n~~G~~~~~~~~l~~l~~l~~~-~gillI~Dev 266 (470)
-. +++.|++.+.+..+++.+| + ++... +....-. ..+.+++-.++|++ ++.+||+=..
T Consensus 113 ~~~~l~~L~~l~~~~~~~vvAIGEiGLD~~~~~~~~~~~-Q~~~F~~ql~lA~e~~~lPviiH~r 176 (325)
T 3ipw_A 113 QEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKET-QLSGYRTLSILHQKYPYLPFFFHCR 176 (325)
T ss_dssp STTHHHHHHHHHHHTGGGEEEEEEEEEETTCCSSSCHHH-HHHHHHHTHHHHHHCTTCCEEEEEE
T ss_pred chHHHHHHHHHHhcCCCCEEEEEeeecCCCcCCCCCHHH-HHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 00 4678888887532245444 2 34421 1111111 34678888999999 9998887543
No 248
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=34.38 E-value=2.2e+02 Score=24.68 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=23.1
Q ss_pred EEEEccc-cCCCccccCChhhHHHHHHHHHhc-CcEEEEe
Q 012138 227 GFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKY-NILMIAD 264 (470)
Q Consensus 227 ~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~-gillI~D 264 (470)
.|++.++ .+-+|..+ .+..+++|.++.+.. ++.+.+|
T Consensus 137 ~Vl~msv~pGf~Gq~f-~~~~l~ki~~lr~~~~~~~I~Vd 175 (228)
T 3ovp_A 137 MALVMTVEPGFGGQKF-MEDMMPKVHWLRTQFPSLDIEVD 175 (228)
T ss_dssp EEEEESSCTTTCSCCC-CGGGHHHHHHHHHHCTTCEEEEE
T ss_pred eEEEeeecCCCCCccc-CHHHHHHHHHHHHhcCCCCEEEe
Confidence 3444443 24478777 677788888887654 4566555
No 249
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=33.97 E-value=92 Score=22.12 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccc
Q 012138 211 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267 (470)
Q Consensus 211 ~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~ 267 (470)
..+..++++. .+.++|++-. +- +++....+..+|++++++++.-...
T Consensus 16 ~~~v~kai~~--gkaklViiA~-D~-------~~~~~~~i~~lc~~~~Ip~~~v~sk 62 (82)
T 3v7e_A 16 TKQTVKALKR--GSVKEVVVAK-DA-------DPILTSSVVSLAEDQGISVSMVESM 62 (82)
T ss_dssp HHHHHHHHTT--TCEEEEEEET-TS-------CHHHHHHHHHHHHHHTCCEEEESCH
T ss_pred HHHHHHHHHc--CCeeEEEEeC-CC-------CHHHHHHHHHHHHHcCCCEEEECCH
Confidence 4566667765 3677777644 11 4467899999999999999875533
No 250
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=32.87 E-value=90 Score=28.86 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=33.4
Q ss_pred CHHHHHHHHHhcCCC-eEEEEEccccCCCccccCC--hhhHHHHHHHHHhcCcEEEEec
Q 012138 210 DITALEKIFKESGDQ-IAGFLFEPIQGEAGVIIPP--DGYLKAVRDLCSKYNILMIADE 265 (470)
Q Consensus 210 d~~~Le~~l~~~~~~-~~~vi~epi~n~~G~~~~~--~~~l~~l~~l~~~~gillI~De 265 (470)
+.++++.+.++.+-+ +++-+ .+ . .+|...++ .+.++++++.|+++|+.+|+|-
T Consensus 70 ~~~~~~~l~~~~G~N~VRi~~-~~-~-~~~~~~~~~~~~~ld~~v~~a~~~Gi~VilD~ 125 (327)
T 3pzt_A 70 NKDSLKWLRDDWGITVFRAAM-YT-A-DGGYIDNPSVKNKVKEAVEAAKELGIYVIIDW 125 (327)
T ss_dssp SHHHHHHHHHHTCCSEEEEEE-ES-S-TTSTTTCGGGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEe-EE-C-CCCcccCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 567777766666544 34433 33 1 23433311 3567889999999999999983
No 251
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=31.88 E-value=29 Score=33.15 Aligned_cols=77 Identities=9% Similarity=-0.046 Sum_probs=37.1
Q ss_pred CHHHHHHHHHhc-CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcce
Q 012138 210 DITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 288 (470)
Q Consensus 210 d~~~Le~~l~~~-~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi 288 (470)
+.++.++.|+.. ....+-|+ ...+.|.+....-.+.+++|.++|+++|.-+|+|=.-.- ++..|+.++-
T Consensus 39 ~~~~~~~Yi~~a~~~Gf~~IF-TSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~---------~~~Lg~s~~d 108 (385)
T 1x7f_A 39 TKEKDMAYISAAARHGFSRIF-TCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAV---------FDQLGISYSD 108 (385)
T ss_dssp CHHHHHHHHHHHHTTTEEEEE-EEECCC--------HHHHHHHHHHHHTTCEEEEEECTTC---------C------CCC
T ss_pred CHHHHHHHHHHHHHCCCCEEE-ccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHH---------HHHcCCCHHH
Confidence 344444444432 11344443 333555544333567799999999999999999954432 3444454444
Q ss_pred eecccccc
Q 012138 289 VILGKALG 296 (470)
Q Consensus 289 ~s~sK~l~ 296 (470)
+.+-|-+|
T Consensus 109 l~~f~~lG 116 (385)
T 1x7f_A 109 LSFFAELG 116 (385)
T ss_dssp THHHHHHT
T ss_pred HHHHHHcC
Confidence 44444444
No 252
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
Probab=31.13 E-value=1.1e+02 Score=27.71 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEe
Q 012138 211 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264 (470)
Q Consensus 211 ~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~D 264 (470)
.++|++ +.+. ..++|-+.+.....+... ....+..+.++|.++|++|++-
T Consensus 108 ~~eL~~-~~~~--g~~Gi~~~~~~~~~~~~~-~d~~~~~~~~~a~e~glpv~iH 157 (291)
T 3irs_A 108 MAQMQE-ILDL--GIRIVNLEPGVWATPMHV-DDRRLYPLYAFCEDNGIPVIMM 157 (291)
T ss_dssp HHHHHH-HHHT--TCCCEEECGGGSSSCCCT-TCGGGHHHHHHHHHTTCCEEEE
T ss_pred HHHHHH-HHhC--CCeEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHcCCeEEEe
Confidence 566777 5543 566666665322223333 4556788899999999988863
No 253
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=30.37 E-value=25 Score=26.29 Aligned_cols=23 Identities=13% Similarity=0.171 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCcEEEEecccc
Q 012138 246 YLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~ 268 (470)
.-++|+++|++||++++.|..-+
T Consensus 43 ~A~~I~~~A~e~gVPi~e~~~LA 65 (97)
T 3t7y_A 43 RAKRIIAEAEKYGVPIMRNVPLA 65 (97)
T ss_dssp HHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCeEEECHHHH
Confidence 36889999999999999997654
No 254
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=30.33 E-value=27 Score=25.88 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCcEEEEecccc
Q 012138 246 YLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~ 268 (470)
.-.+|+++|+++|++++.|..-+
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~LA 50 (93)
T 2vt1_B 28 CALAVRKYANEVGIPTVRDVKLA 50 (93)
T ss_dssp HHHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEECHHHH
Confidence 36899999999999999997654
No 255
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=28.68 E-value=28 Score=26.09 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhcCcEEEEecccc
Q 012138 246 YLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~ 268 (470)
.-.+|+++|+++|++++.|..-+
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~LA 50 (98)
T 3c01_E 28 RALAVRAYAEKVGVPVIVDIKLA 50 (98)
T ss_dssp HHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCCeecCHHHH
Confidence 36899999999999999997554
No 256
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=28.52 E-value=35 Score=33.46 Aligned_cols=27 Identities=7% Similarity=0.269 Sum_probs=24.2
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
+++.+++|++-|+++|+-||+|=|...
T Consensus 75 t~~df~~lv~~aH~~Gi~VilD~V~NH 101 (496)
T 4gqr_A 75 NEDEFRNMVTRCNNVGVRIYVDAVINH 101 (496)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCc
Confidence 567899999999999999999988763
No 257
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=27.37 E-value=99 Score=22.92 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=33.5
Q ss_pred CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCc-EEEEecccc
Q 012138 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI-LMIADEIQS 268 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gi-llI~Dev~~ 268 (470)
+.+.|+++++++ ++..|++=-+.|+.|..-+.....++..+..++.++ +..+||-++
T Consensus 39 ~~~~l~~li~e~--~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERlT 96 (98)
T 1iv0_A 39 DVEALLDFVRRE--GLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHH--TCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSCC
T ss_pred HHHHHHHHHHHc--CCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 578888888886 555566543466667666544334444433322265 456788654
No 258
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=27.32 E-value=41 Score=32.70 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=19.0
Q ss_pred ChhhHHHHHHHHHhcCcEEEEecccc
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~ 268 (470)
+.+.++++++-|+++|+-||.|=|..
T Consensus 68 t~~df~~lv~~aH~~Gi~VilD~V~N 93 (441)
T 1lwj_A 68 SEREFKEMIEAFHDSGIKVVLDLPIH 93 (441)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35567777777888888888887754
No 259
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=26.99 E-value=29 Score=32.93 Aligned_cols=69 Identities=10% Similarity=0.006 Sum_probs=39.9
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecHHH
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEV 311 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~ 311 (470)
.+.|.+....-.+.+++|.++|+++|.-+|+|=... .+++.|+.++-+.+-|-+| .|+ |+=.-+..+++
T Consensus 38 L~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~---------~l~~Lg~s~~dl~~~~~lGi~gl-RLD~Gf~~~ei 107 (372)
T 2p0o_A 38 LHIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGE---------ALKRAGFSFDELEPLIELGVTGL-RMDYGITIEQM 107 (372)
T ss_dssp ECCC-----CHHHHHHHHHHHHHHHTCEEEEEECHH---------HHHTTTCBTTBCHHHHHHTCCEE-EECSSCCHHHH
T ss_pred CCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHH---------HHHHcCCCHHHHHHHHHcCCCEE-EEcCCCCHHHH
Confidence 355554433245678999999999999999995433 1445556555555555555 344 54443333333
No 260
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.55 E-value=1.1e+02 Score=22.66 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 211 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 211 ~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
.+...++++.. +.++|++-. .. +++....|..+|++++++++.
T Consensus 20 ~~~v~kai~~g--ka~lViiA~-D~-------~~~~~~~i~~~c~~~~ip~~~ 62 (99)
T 3j21_Z 20 SNETIRLAKTG--GAKLIIVAK-NA-------PKEIKDDIYYYAKLSDIPVYE 62 (99)
T ss_dssp HHHHHHHHHHT--CCSEEEEEC-CC-------CHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHcC--CccEEEEeC-CC-------CHHHHHHHHHHHHHcCCCEEE
Confidence 45666777663 566666544 21 677789999999999999754
No 261
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=26.00 E-value=24 Score=30.77 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=34.3
Q ss_pred eeeecCC---CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 203 HLKVDFG---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 203 ~~~~~~~---d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
+.++|.. .+++++.+-+... -..|++|| ||-+ +.+-+++|.++|.+.|+..|+=-+|+.
T Consensus 162 vKffPm~Gl~~l~E~~avAka~a--~~g~~lEP----TGGI--dl~N~~~I~~i~l~aGv~~viPHIYss 223 (249)
T 3m0z_A 162 IKYFPMGGLKHRAEFEAVAKACA--AHDFWLEP----TGGI--DLENYSEILKIALDAGVSKIIPHIYSS 223 (249)
T ss_dssp EEECCCTTTTTHHHHHHHHHHHH--HTTCEEEE----BSSC--CTTTHHHHHHHHHHHTCSCBCCBCCGG
T ss_pred eeEeecCCcccHHHHHHHHHHHH--HcCceECC----CCCc--cHhhHHHHHHHHHHcCCCeecccccce
Confidence 4566654 3455444333210 01237777 3333 445578888888888888777777764
No 262
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=25.03 E-value=25 Score=31.03 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=23.4
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
|++|| ||-+ +.+-+++|.++|.+.|+..|+=-+|+.
T Consensus 211 ~~lEP----TGGI--dl~Nf~~I~~i~l~aGv~~viPHIYsS 246 (275)
T 3m6y_A 211 FALEP----TGGI--DKENFETIVRIALEANVEQVIPHVYSS 246 (275)
T ss_dssp CEEEE----BSSC--CTTTHHHHHHHHHHTTCSCBCCEECGG
T ss_pred ceECC----CCCc--cHhHHHHHHHHHHHcCCCeecccccce
Confidence 36777 3333 445577778888877777777666663
No 263
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=24.60 E-value=1.1e+02 Score=22.55 Aligned_cols=43 Identities=5% Similarity=-0.089 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 211 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 211 ~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
.+...++++.. +.++|++-. .. |++....|..+|++++++++.
T Consensus 21 ~~~v~kai~~g--ka~lViiA~-D~-------~~~~~~~l~~~c~~~~vp~~~ 63 (101)
T 1w41_A 21 ARKSIQYAKMG--GAKLIIVAR-NA-------RPDIKEDIEYYARLSGIPVYE 63 (101)
T ss_dssp HHHHHHHHHHT--CCSEEEEET-TS-------CHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcC--CCcEEEEeC-CC-------CHHHHHHHHHHHHhcCCCEEE
Confidence 45666677663 556666544 21 667789999999999998664
No 264
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=23.89 E-value=3.3e+02 Score=22.96 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=22.7
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
++.++.+++ |.. .++..+.+.++|+++|+.+++
T Consensus 70 ~v~~v~vd~-----g~~--~~e~~~~v~~~~~~~gi~~~v 102 (215)
T 1sur_A 70 DIPVILTDT-----GYL--FPETYRFIDELTDKLKLNLKV 102 (215)
T ss_dssp TCEEEEEEC-----SCB--CHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEeeC-----CCC--CHHHHHHHHHHHHHhCCcEEE
Confidence 566677766 221 345578888899999987764
No 265
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=23.79 E-value=55 Score=32.25 Aligned_cols=27 Identities=11% Similarity=0.003 Sum_probs=22.5
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
+.+.+++|++-|+++|+-||.|=|...
T Consensus 80 t~~d~~~Lv~~aH~~Gi~VilD~V~NH 106 (488)
T 1wza_A 80 TLEDFHKLVEAAHQRGIKVIIDLPINH 106 (488)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCCSB
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 466789999999999999999988653
No 266
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=22.87 E-value=89 Score=30.16 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=23.3
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
+.+.+++|++-|+++|+-||.|=|....+
T Consensus 80 t~~d~~~lv~~ah~~Gi~vilD~V~NH~s 108 (424)
T 2dh2_A 80 SKEDFDSLLQSAKKKSIRVILDLTPNYRG 108 (424)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCTTTTS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 45678999999999999999998876443
No 267
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=22.86 E-value=73 Score=32.44 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=24.6
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
+.+.+++|++-|+++|+-||+|=|....+
T Consensus 197 t~~df~~Lv~~aH~~Gi~VilD~V~NH~~ 225 (601)
T 3edf_A 197 SNEDFVRLSTEARKRGMGLIQDVVLSHIG 225 (601)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEECCcccC
Confidence 45679999999999999999999876443
No 268
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=22.50 E-value=59 Score=31.87 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
+.+.++++++-|+++|+-||.|=|...
T Consensus 95 t~~df~~lv~~~h~~Gi~VilD~V~NH 121 (475)
T 2z1k_A 95 GNEALRHLLEVAHAHGVRVILDGVFNH 121 (475)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 466788888888888888888877653
No 269
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=22.26 E-value=56 Score=29.62 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 211 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 211 ~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
+..|.+.++++ ++++|++|+ +. ++...+.|.++|++.|+.+..
T Consensus 201 l~~l~~~ik~~--~v~~if~e~-~~-------~~~~~~~l~~~a~~~g~~v~~ 243 (282)
T 3mfq_A 201 MIETVNLIIDH--NIKAIFTES-TT-------NPERMKKLQEAVKAKGGQVEV 243 (282)
T ss_dssp HHHHHHHHHHH--TCCEEECBT-TS-------CTHHHHHHHHHHHTTSCCCEE
T ss_pred HHHHHHHHHHc--CCCEEEEeC-CC-------ChHHHHHHHHHHHhcCCceEE
Confidence 44555555554 788999998 32 445578889999999976543
No 270
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=22.22 E-value=57 Score=32.52 Aligned_cols=27 Identities=7% Similarity=0.082 Sum_probs=23.3
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
+.+.+++|++-|+++|+-||.|=|..-
T Consensus 78 t~~dfk~Lv~~aH~~Gi~VilD~V~NH 104 (549)
T 4aie_A 78 TMADMDELISKAKEHHIKIVMDLVVNH 104 (549)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 456799999999999999999988763
No 271
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=22.08 E-value=1.1e+02 Score=30.01 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=24.3
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
+.+.++++++-|+++|+-||+|=|....
T Consensus 96 t~~df~~lv~~~H~~Gi~VilD~V~NH~ 123 (478)
T 2guy_A 96 TADDLKALSSALHERGMYLMVDVVANHM 123 (478)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcccC
Confidence 5677999999999999999999887643
No 272
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=22.08 E-value=57 Score=28.92 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCC----CccccCChh---hHHHHHHHHHhcCcEEEEec
Q 012138 211 ITALEKIFKESGDQIAGFLFEPIQGE----AGVIIPPDG---YLKAVRDLCSKYNILMIADE 265 (470)
Q Consensus 211 ~~~Le~~l~~~~~~~~~vi~epi~n~----~G~~~~~~~---~l~~l~~l~~~~gillI~De 265 (470)
++.++++++. .+.+|.+=--..+ .|... ..+ ..+++.++|++||+.||+++
T Consensus 46 ~~~~~~al~~---Gv~~vqlR~K~~~~~~~~~~l~-~~~~~~~a~~l~~l~~~~~~~liInd 103 (243)
T 3o63_A 46 AQFAEAALAG---GVDIIQLRDKGSPGELRFGPLQ-ARDELAACEILADAAHRYGALFAVND 103 (243)
T ss_dssp HHHHHHHHHT---TCSEEEECCTTCHHHHHHCSCC-HHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHC---CCCEEEEccCCCCccccccCCC-HHHHHHHHHHHHHHHHhhCCEEEEeC
Confidence 5677888875 5666665321211 01111 223 24789999999999888854
No 273
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=21.75 E-value=1.3e+02 Score=27.94 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=34.4
Q ss_pred CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc
Q 012138 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~ 268 (470)
+.+.++.+++. ..++||++. .+.+ .+ ++++++.|.+.+.+.|++++ --.|+
T Consensus 228 ~~~~l~~~~~~---g~~GiVle~-~G~G-n~--p~~~~~~l~~a~~~~gi~VV-~~Sr~ 278 (331)
T 1agx_A 228 MPDAYQAFAKA---GVKAIIHAG-TGNG-SM--ANYLVPEVRKLHDEQGLQIV-RSSRV 278 (331)
T ss_dssp CTHHHHHHHTT---TCSEEEEEE-BTTT-BC--CTTHHHHHHHHHHTTCCEEE-EEESS
T ss_pred CHHHHHHHHhC---CCCEEEEee-ECCC-CC--CHHHHHHHHHHHHcCCCEEE-EECCC
Confidence 57778877765 578999998 5543 33 46778888877635687654 34554
No 274
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=21.68 E-value=55 Score=31.85 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=23.6
Q ss_pred ChhhHHHHHHHHHhcCcEEEEecccc
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~ 268 (470)
+.+.+++|++-|+++|+-||.|-|.-
T Consensus 63 t~~dfk~Lv~~aH~~Gi~VilD~V~N 88 (448)
T 1g94_A 63 NRAQFIDMVNRCSAAGVDIYVDTLIN 88 (448)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 46779999999999999999999876
No 275
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=21.56 E-value=3.9e+02 Score=23.01 Aligned_cols=53 Identities=9% Similarity=0.245 Sum_probs=30.3
Q ss_pred CHHHHHHHHHhcCCCeEEE--E-EccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 210 DITALEKIFKESGDQIAGF--L-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~v--i-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
+++.|++.+.+..+++.+| + ++........-. ..+.++...++|+++|.+|++
T Consensus 77 ~~~~l~~~~~~~~~~~~~iGEiGld~~~~~~~~~~-q~~~f~~~~~~a~~~~~Pv~i 132 (259)
T 1zzm_A 77 SLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFER-QQWLLDEQLKLAKRYDLPVIL 132 (259)
T ss_dssp HHHHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHH-HHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEeccCCCCCCCCHHH-HHHHHHHHHHHHHHhCCcEEE
Confidence 4677877776532355444 1 332111111111 334678889999999998885
No 276
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=26.64 E-value=20 Score=26.19 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCcEEEEecccc
Q 012138 247 LKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~ 268 (470)
-.+|+++|++||++++.|..-+
T Consensus 29 A~~I~e~A~e~~VPi~e~~~LA 50 (87)
T 3b1s_B 29 AQKIVEIAENYSIPVVRKPELA 50 (87)
Confidence 5789999999999999997655
No 277
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=21.04 E-value=87 Score=24.29 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 211 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 211 ~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
++.++++.+. .+++|++.+ |.. -+++.++|+++|+.++-
T Consensus 72 ~~~v~e~~~~---g~k~v~~~~-----G~~------~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 72 LSEYNYILSL---KPKRVIFNP-----GTE------NEELEEILSENGIEPVI 110 (122)
T ss_dssp GGGHHHHHHH---CCSEEEECT-----TCC------CHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhc---CCCEEEECC-----CCC------hHHHHHHHHHcCCeEEC
Confidence 3445666554 455677655 221 26889999999999883
No 278
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=21.00 E-value=1.4e+02 Score=29.22 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=24.0
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
+.+.++++++-|+++|+-||.|=|....
T Consensus 96 t~~df~~lv~~~H~~Gi~VilD~V~NH~ 123 (484)
T 2aaa_A 96 TADNLKSLSDALHARGMYLMVDVVPDHM 123 (484)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCCc
Confidence 4677999999999999999999887643
No 279
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=20.92 E-value=2.9e+02 Score=21.20 Aligned_cols=51 Identities=2% Similarity=0.164 Sum_probs=30.2
Q ss_pred eeecCCCHHHHHHHHHh----cC---CCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEE
Q 012138 204 LKVDFGDITALEKIFKE----SG---DQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262 (470)
Q Consensus 204 ~~~~~~d~~~Le~~l~~----~~---~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI 262 (470)
...+..|++++.+.|++ .+ .....|+ ++... ...+ +.+|.++|+++|+.+|
T Consensus 20 l~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~----~~~d----l~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 20 VHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE----SPVN----WPELHKIVTSTGLRII 78 (120)
T ss_dssp EEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC----SSCC----HHHHHHHHHTTTCEEE
T ss_pred EEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEccccC----ChHH----HHHHHHHHHHcCCEEE
Confidence 34444577766665544 22 1333343 44432 1133 9999999999999886
No 280
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=20.92 E-value=1.9e+02 Score=27.10 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=11.0
Q ss_pred hcCcEEEEeccccC
Q 012138 256 KYNILMIADEIQSG 269 (470)
Q Consensus 256 ~~gillI~Dev~~g 269 (470)
...+.+|+|.+|+|
T Consensus 184 g~~vt~IlD~ChSG 197 (350)
T 4f6o_A 184 GVRLTALFDSCHSG 197 (350)
T ss_dssp TCEEEEEECSSSCT
T ss_pred CCeEEEEEccCCCC
Confidence 34578899999986
No 281
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=20.66 E-value=3e+02 Score=24.11 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=32.0
Q ss_pred CHHHHHHHHHhcCCCeEEE--E-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEe
Q 012138 210 DITALEKIFKESGDQIAGF--L-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~v--i-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~D 264 (470)
+++.|++.+.. +++.+| + ++...+..+.-. ....++.+.++|.++|.++++=
T Consensus 85 ~~~~l~~~~~~--~~~~~iGe~Gld~~~~~~~~~~-q~~~f~~~~~~a~~~~lPv~iH 139 (268)
T 1j6o_A 85 FIEHLEKFAKD--EKVVAIGETGLDFFRNISPAEV-QKRVFVEQIELAGKLNLPLVVH 139 (268)
T ss_dssp HHHHHHHHTTS--TTEEEEEEEEEETTTCSSCHHH-HHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcc--CCEEEEEccccCCcccCCChHH-HHHHHHHHHHHHHHhCCCEEEE
Confidence 46777777653 234443 2 454222233333 5567888999999999988863
No 282
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=20.61 E-value=62 Score=32.81 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=24.4
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
+.+.++++++-|+++|+-||.|=|...++
T Consensus 218 t~~dfk~lv~~~H~~Gi~VilD~V~NH~~ 246 (585)
T 1wzl_A 218 DLPTFRRLVDEAHRRGIKIILDAVFNHAG 246 (585)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEcCCcCC
Confidence 46779999999999999999998876443
No 283
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=20.33 E-value=1.5e+02 Score=22.41 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 211 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 211 ~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
.+...++++.. +.++|++-. . + +++....|..+|++++++++.
T Consensus 26 ~~~v~kai~~g--ka~lViiA~-D-----~--~~~~~~~l~~~c~~~~Vp~~~ 68 (110)
T 3cpq_A 26 SKRTIKFVKHG--EGKLVVLAG-N-----I--PKDLEEDVKYYAKLSNIPVYQ 68 (110)
T ss_dssp HHHHHHHHHTT--CCSEEEECT-T-----C--BHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHcC--CceEEEEeC-C-----C--CHHHHHHHHHHHHHcCCCEEE
Confidence 45666677653 556666544 1 1 567789999999999998653
No 284
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=20.12 E-value=57 Score=32.16 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHhcCcEEEEecccc
Q 012138 244 DGYLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 244 ~~~l~~l~~l~~~~gillI~Dev~~ 268 (470)
.+.+++|++-|+++|+-||.|=|..
T Consensus 102 ~~df~~Lv~~aH~~Gi~VilD~V~N 126 (488)
T 2wc7_A 102 NEAFKELLDAAHQRNIKVVLDGVFN 126 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4568888888888888888887765
No 285
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=20.02 E-value=71 Score=30.77 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=20.3
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
+.+.++++++-|+++|+-||.|=|...
T Consensus 73 ~~~d~~~lv~~~h~~Gi~VilD~V~NH 99 (422)
T 1ua7_A 73 TEQEFKEMCAAAEEYGIKVIVDAVINH 99 (422)
T ss_dssp EHHHHHHHHHHHHTTTCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 455688888888888888888877653
Done!