Query 012139
Match_columns 470
No_of_seqs 135 out of 282
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 23:28:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10615 DUF2470: Protein of u 99.5 1.4E-14 3E-19 119.3 6.8 67 398-470 2-70 (83)
2 PF13883 Pyrid_oxidase_2: Pyri 99.5 5.6E-14 1.2E-18 129.7 6.0 163 111-394 2-169 (170)
3 COG0748 HugZ Putative heme iro 98.9 3.1E-10 6.7E-15 111.6 1.3 149 276-469 67-221 (245)
4 PRK03467 hypothetical protein; 92.1 0.33 7.2E-06 45.2 5.7 70 276-388 69-142 (144)
5 PF10446 DUF2457: Protein of u 80.7 1.2 2.7E-05 48.2 2.8 54 237-290 107-163 (458)
6 PF10446 DUF2457: Protein of u 67.6 2.7 5.8E-05 45.7 1.3 14 184-198 25-38 (458)
7 KOG1832 HIV-1 Vpr-binding prot 63.8 13 0.00028 44.2 5.8 109 88-197 1268-1389(1516)
8 COG0748 HugZ Putative heme iro 57.9 7.3 0.00016 39.4 2.4 43 407-452 2-44 (245)
9 PTZ00415 transmission-blocking 48.5 10 0.00022 47.5 1.9 15 285-299 282-296 (2849)
10 PF04931 DNA_pol_phi: DNA poly 47.8 12 0.00025 42.9 2.2 10 269-278 704-713 (784)
11 KOG0943 Predicted ubiquitin-pr 44.8 13 0.00027 45.5 1.9 46 406-452 1880-1931(3015)
12 PF05071 NDUFA12: NADH ubiquin 41.9 16 0.00034 32.1 1.6 12 154-165 6-17 (105)
13 PF05285 SDA1: SDA1; InterPro 38.5 28 0.00062 36.0 3.2 15 231-245 111-125 (324)
14 KOG3130 Uncharacterized conser 37.7 19 0.00041 39.2 1.8 8 267-274 310-317 (514)
15 PLN03095 NADH:ubiquinone oxido 29.9 30 0.00065 31.5 1.5 13 154-166 15-27 (115)
16 PF03115 Astro_capsid: Astrovi 26.7 21 0.00046 41.5 0.0 19 299-317 732-751 (787)
17 PF06970 RepA_N: Replication i 24.2 38 0.00082 28.3 1.0 21 153-174 42-62 (76)
18 cd06403 PB1_Par6 The PB1 domai 23.8 88 0.0019 27.0 3.1 37 148-185 38-77 (80)
19 KOG3374 Cellular repressor of 23.3 1.9E+02 0.0042 28.7 5.7 75 284-395 131-207 (210)
20 PLN02732 Probable NADH dehydro 22.8 46 0.001 31.9 1.4 13 154-166 54-66 (159)
21 KOG1832 HIV-1 Vpr-binding prot 22.6 53 0.0012 39.4 2.1 23 152-174 1307-1329(1516)
22 PRK08183 NADH dehydrogenase; V 21.9 52 0.0011 30.6 1.5 14 154-167 31-44 (133)
23 PRK06630 hypothetical protein; 20.4 38 0.00083 30.2 0.4 13 154-166 18-30 (99)
No 1
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=99.53 E-value=1.4e-14 Score=119.28 Aligned_cols=67 Identities=30% Similarity=0.434 Sum_probs=52.6
Q ss_pred Chhhhh-hhHHHHHHHhcCChhhHHHHHHHHHHhcCC-CCCceEEEeecCCCceEEEecCCcceEEEeecCCCCC
Q 012139 398 PDVIAH-SAANIISRLKAGGEKTTQALKSLCWRTKGI-QVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC 470 (470)
Q Consensus 398 PD~LAa-sAa~IIeHMNeDHadaldAL~~ya~~~~G~-~veeArMIGVDrlGfDLRV~sG~~~~tlRfpFp~pA~ 470 (470)
|||+++ .+++||+|||+||+ ++|.+||+++.|+ .+.+|+|++||++||+|++ .+.+.+||||++|+.
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~---d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~p~~ 70 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHA---DDLLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPPPVT 70 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-H---HHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS---
T ss_pred cCcccHHHHHHHHHHHHHhHH---HHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCCCCC
Confidence 688985 99999999999999 6779999999998 4799999999999999999 245899999999974
No 2
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=99.46 E-value=5.6e-14 Score=129.73 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=99.8
Q ss_pred CcCchhhcceeEEEEcCeeEEEEeeeccCccccccccCCCCee----eccCCCEEEEecCchhHhhhhccCCCceEEEEe
Q 012139 111 ARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYV----TDEHGNIYIQVKNEEDILQSLISENNFVQVIIG 186 (470)
Q Consensus 111 ~~lt~aE~aRTivEvN~ka~l~~~~~v~~e~H~~i~w~e~~Y~----~D~~GdiyFqv~~d~~il~~~~~~nn~v~viiG 186 (470)
.+-..|+.|||+|...+-|+|--- .......+.-+-.=.+|. .|.-|+.||=+.+-..--|++. +|+-+.++|.
T Consensus 2 ~~~~aA~~AR~Ll~~~~~g~LsTl-s~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~-~~~r~SL~i~ 79 (170)
T PF13883_consen 2 TREEAAELARTLLHQSRWGTLSTL-STQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLK-ADPRVSLTIS 79 (170)
T ss_dssp -TT-HHHHHHHHHHH-SEEEEEEE---SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHH-H--EEEEEEE
T ss_pred ChHHHHHHHHHHHhhCCEEEEEec-cCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHh-hCCCEEEEEe
Confidence 456789999999999999887432 122334455555555566 6899999999999888888875 5566676665
Q ss_pred cchhHHHHhhhhcCccccccccccCCCCCCCccCCCCCccCccccccccccceecccCccccccccCcccccccccccch
Q 012139 187 FDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHP 266 (470)
Q Consensus 187 ~d~~~~~~e~~~~~~s~~df~~~~~~ded~d~ed~~~~~~~~~~dedy~~~~~~v~~d~~e~~~~l~dW~~~eT~~~~HP 266 (470)
..... +
T Consensus 80 ~~~~~------------------------------------------~-------------------------------- 85 (170)
T PF13883_consen 80 EPQGG------------------------------------------D-------------------------------- 85 (170)
T ss_dssp GGGSS------------------------------------------H--------------------------------
T ss_pred cCCCC------------------------------------------c--------------------------------
Confidence 43320 0
Q ss_pred hHHHHHHHHHhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccc-cCCCCCCccccccCCccccccccCCCCC
Q 012139 267 MYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRNE 345 (470)
Q Consensus 267 ~yFAk~l~~~~~~~~~~~md~P~~glsI~G~lrpa~~eE~s~ir~~~~~~~-~~~~y~s~~~~~~~~~e~~~~i~~~~~~ 345 (470)
| .+...+.|+.-.+||||+|.++|+..+|...+|++|+.+| .+..+
T Consensus 86 -----~-----~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w----------------------- 132 (170)
T PF13883_consen 86 -----C-----DNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHW----------------------- 132 (170)
T ss_dssp -----H-----HHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-----------------------
T ss_pred -----c-----cccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCcccc-----------------------
Confidence 0 0002344556779999999999999888899999999999 44444
Q ss_pred CCCCCCCCcccccCCCCCCCeEEEEEEeeeEEEecCCCcccccChhhhh
Q 012139 346 SEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYR 394 (470)
Q Consensus 346 ~d~~~~g~~~~~~~~~~~~DFsFYRLe~erIrlIGGFGra~WVd~eDy~ 394 (470)
.++ . +-|||.||||++++|+||||||+++||+++||.
T Consensus 133 ~~~-----------~-~~hdf~~~rl~i~~v~~vgGFG~~~~i~~~~Y~ 169 (170)
T PF13883_consen 133 LPF-----------N-SPHDFFFYRLEIERVYLVGGFGGAAWISAEEYY 169 (170)
T ss_dssp -GG---------------G--EEEEEEEEEEEEE-SSSS-EEE-HHHHH
T ss_pred ccc-----------c-ccCccEEEEEEEEEEEEECccCCceEeCHHHhc
Confidence 122 1 348999999999999999999999999999996
No 3
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=98.91 E-value=3.1e-10 Score=111.57 Aligned_cols=149 Identities=10% Similarity=0.048 Sum_probs=111.0
Q ss_pred HhcCCcccccCCCCCeeEEEEEeeecc--ccchhhHHHHhhccc-cCCCCCCccccccCCccccccccCCCCCCCCCCCC
Q 012139 276 VISDDPIDWMEQPPAGITIQGLLRPAL--IEEHSDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNG 352 (470)
Q Consensus 276 ~~~~~~~~~md~P~~glsI~G~lrpa~--~eE~s~ir~~~~~~~-~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~~~~g 352 (470)
.+...+.+.=.+--.||+.++...... .--++.++++++.++ ++..| +++
T Consensus 67 il~~~~g~~d~~~~~Rl~~e~~afr~~~~sv~lat~~~~g~~~~syAp~~-----------------------~~~---- 119 (245)
T COG0748 67 ILLGEPGKGDELALPRLTLEIEAFRLEFDSVALATLRERGLPRASYAPLY-----------------------VDD---- 119 (245)
T ss_pred heecCcCcCChhhccchhHHHHHHHhccchHHHhhhhhcCCcCCCcCceE-----------------------ecC----
Confidence 344555555556667888888877776 455788999999888 66666 333
Q ss_pred CcccccCCCCCCCeEEEEEEeeeEEEecCCCcccccChhhhhc-cCC-hhhhhhhHHHHHHHhcCChhhHHHHHHHHHHh
Q 012139 353 SEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRK-AQP-DVIAHSAANIISRLKAGGEKTTQALKSLCWRT 430 (470)
Q Consensus 353 ~~~~~~~~~~~~DFsFYRLe~erIrlIGGFGra~WVd~eDy~~-A~P-D~LAasAa~IIeHMNeDHadaldAL~~ya~~~ 430 (470)
+||.+|++++.+...++|+++ +.+.+.. ... ...+..+.+++.|||++|. +|+..|++.+
T Consensus 120 -----------~d~~iyis~~arh~~N~~~~p----~vs~m~iedea~a~s~~~r~rl~~hmnAd~~---eai~~yaqv~ 181 (245)
T COG0748 120 -----------GDYYIYISEIARHARNLGFNP----KVSVMFIEDEAKAKSAFARKRLREHMNADHA---EAIAEYAQVL 181 (245)
T ss_pred -----------CceEEEEehHHHHhhccCcCC----chhhheecCchhhhhHHHHHHHHHHhhhHHH---HHHHHHHHHH
Confidence 689999999999999999999 2222222 122 2235567799999999999 6679999988
Q ss_pred cCCCCCc-eEEEeecCCCceEEEecCCcceEEEeecCCCC
Q 012139 431 KGIQVEE-EAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRV 469 (470)
Q Consensus 431 ~G~~vee-ArMIGVDrlGfDLRV~sG~~~~tlRfpFp~pA 469 (470)
.++.... .+|.|||+.|+|+.+....+....|+.|+++.
T Consensus 182 ~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~ 221 (245)
T COG0748 182 AQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAY 221 (245)
T ss_pred HHHhhhhcchhhcccccccceeeeccCCCceEEeccchhh
Confidence 7765444 44999999999999864445578999999875
No 4
>PRK03467 hypothetical protein; Provisional
Probab=92.05 E-value=0.33 Score=45.18 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=52.4
Q ss_pred HhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccccCCCCCCccccccCCccccccccCCCCCCCCCCCCCcc
Q 012139 276 VISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEE 355 (470)
Q Consensus 276 ~~~~~~~~~md~P~~glsI~G~lrpa~~eE~s~ir~~~~~~~~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~~~~g~~~ 355 (470)
.|..++-.|.. =.||-+.|.++++..+|+...|++|..+..-..-
T Consensus 69 TI~~~~~~v~~--I~GvQ~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~--------------------------------- 113 (144)
T PRK03467 69 TVNGQPKTVAL--IRGVQFKGEIRRLEGEESDAARKRYNRRFPVARA--------------------------------- 113 (144)
T ss_pred EEcCCCcchhh--ceEEEEEEEEEecChhHHHHHHHHHHHhCcchhc---------------------------------
Confidence 34445555544 2588899999999999889999999998732211
Q ss_pred cccCCCCCCCeEEEEEEeeeEEEec---CCCc-cccc
Q 012139 356 SKKDDKPMNGTSFYKLEMTKIQPIL---AHAH-QAAV 388 (470)
Q Consensus 356 ~~~~~~~~~DFsFYRLe~erIrlIG---GFGr-a~WV 388 (470)
....+|+|++..|+|++ |||+ ..|-
T Consensus 114 --------~~~~iw~l~l~~iK~tdN~LGFgkKl~w~ 142 (144)
T PRK03467 114 --------LSAPVWELRLDEIKMTDNTLGFGKKLHWL 142 (144)
T ss_pred --------cCCceEEEEEEEEEEeccccccccceEEe
Confidence 12458999999999999 9995 6663
No 5
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=80.67 E-value=1.2 Score=48.16 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=26.1
Q ss_pred cceecccCccccccccCcccccccccccch--hHHH-HHHHHHhcCCcccccCCCCC
Q 012139 237 NWVNVLEDEDDEDEMLGDWAKLETMRSSHP--MYFA-KKLSEVISDDPIDWMEQPPA 290 (470)
Q Consensus 237 ~~~~v~~d~~e~~~~l~dW~~~eT~~~~HP--~yFA-k~l~~~~~~~~~~~md~P~~ 290 (470)
.+|+..+|+++++..+.=|+---|....++ +-.. ..+....|+..+.=+.+..+
T Consensus 107 ~GFAdSDDEdD~~sd~~~WtP~~~t~~~~~~~~~~~r~~~~~~~S~sS~~S~~~~~~ 163 (458)
T PF10446_consen 107 AGFADSDDEDDDGSDYEFWTPGATTAATSSSHLDVRRRSSHRRSSDSSIESLSSRRP 163 (458)
T ss_pred cccccccccccccccceeecccccccccccccccccccccccCCCCCccccccCCcc
Confidence 345555454444567888876554433332 1111 12233445555555555433
No 6
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=67.57 E-value=2.7 Score=45.68 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=6.8
Q ss_pred EEecchhHHHHhhhh
Q 012139 184 IIGFDTTEMIKEMEL 198 (470)
Q Consensus 184 iiG~d~~~~~~e~~~ 198 (470)
-|=++-. |-+|+.+
T Consensus 25 KlTi~Dt-lkKE~~I 38 (458)
T PF10446_consen 25 KLTINDT-LKKENAI 38 (458)
T ss_pred cccHHHH-HHHHHHH
Confidence 3444444 5555543
No 7
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=63.79 E-value=13 Score=44.16 Aligned_cols=109 Identities=12% Similarity=0.206 Sum_probs=64.7
Q ss_pred CCCCCCCCCc--hhchhcccccCcCCc--CchhhcceeEEEEcCeeEEEEeee--------ccCccccccccCCCC-eee
Q 012139 88 KNERTSYHPF--EDIADSTLKNGEEAR--LTAAETSRTIIEVNSTATLMFTDF--------TNGGAHENIIWPDLP-YVT 154 (470)
Q Consensus 88 ~~~~~~YHP~--Eei~~~~~~~~~~~~--lt~aE~aRTivEvN~ka~l~~~~~--------v~~e~H~~i~w~e~~-Y~~ 154 (470)
-++-+++||- |=|-.++-=+.+--+ =|-.+.-|+-|=-|+.|++|.-.. ||++=-++=+.+-|. |=+
T Consensus 1268 ~~~~G~FHP~g~eVIINSEIwD~RTF~lLh~VP~Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a 1347 (1516)
T KOG1832|consen 1268 DYGGGGFHPSGNEVIINSEIWDMRTFKLLHSVPSLDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDA 1347 (1516)
T ss_pred ecccccccCCCceEEeechhhhhHHHHHHhcCccccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccc
Confidence 3678899995 333333111111112 255677788999999999999887 555555555666664 445
Q ss_pred ccCCCEEEEecCchhHhhhhccCCCceEEEEecchhHHHHhhh
Q 012139 155 DEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEME 197 (470)
Q Consensus 155 D~~GdiyFqv~~d~~il~~~~~~nn~v~viiG~d~~~~~~e~~ 197 (470)
=+|-+|- .++=+-.||.=+++...---.+|-|-.++|.-.|+
T Consensus 1348 ~dYs~ia-Ti~v~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~s 1389 (1516)
T KOG1832|consen 1348 IDYSDIA-TIPVDRCLLDLCTEPTDSFLGVIEMEDQEDMDQFS 1389 (1516)
T ss_pred cccccce-eeecccchhhhhcCCccceEEEEeccChhhhhhhh
Confidence 6777774 34445677766655444334555555554544444
No 8
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=57.86 E-value=7.3 Score=39.43 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=33.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhcCCCCCceEEEeecCCCceEEE
Q 012139 407 NIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRV 452 (470)
Q Consensus 407 ~IIeHMNeDHadaldAL~~ya~~~~G~~veeArMIGVDrlGfDLRV 452 (470)
+|++|||+.|-.. +..+|+...+....+.-+.++|+.|+|+.-
T Consensus 2 ~~ea~~na~~~l~---~~~~~~l~~~~~~~g~p~~sv~~~gid~~g 44 (245)
T COG0748 2 DIEAHMNARHLLR---SARLAALAGLEPVTGVPFVSVVPVGIDIDG 44 (245)
T ss_pred cHHHHHHHHHHHH---HHHHHHHhcCCCCCCCceeeeccceeccCC
Confidence 5889999999954 478887655556688889999998888743
No 9
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=48.51 E-value=10 Score=47.54 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=8.3
Q ss_pred cCCCCCeeEEEEEee
Q 012139 285 MEQPPAGITIQGLLR 299 (470)
Q Consensus 285 md~P~~glsI~G~lr 299 (470)
+..|=+.|-|.|-++
T Consensus 282 i~~p~~~v~iicp~k 296 (2849)
T PTZ00415 282 INEPLIKVKIICPLK 296 (2849)
T ss_pred cccccceeEEEccCC
Confidence 345666666665444
No 10
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=47.77 E-value=12 Score=42.88 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=5.8
Q ss_pred HHHHHHHHhc
Q 012139 269 FAKKLSEVIS 278 (470)
Q Consensus 269 FAk~l~~~~~ 278 (470)
|-.+|++|..
T Consensus 704 ~~~~l~~aL~ 713 (784)
T PF04931_consen 704 FRSALAKALG 713 (784)
T ss_pred HHHHHHHHhc
Confidence 5556666543
No 11
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=44.83 E-value=13 Score=45.51 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=31.2
Q ss_pred HHHHHHHhcC-ChhhHHHHHHHHHHhcCC-----CCCceEEEeecCCCceEEE
Q 012139 406 ANIISRLKAG-GEKTTQALKSLCWRTKGI-----QVEEEAVIGVDSIGFDLRV 452 (470)
Q Consensus 406 a~IIeHMNeD-HadaldAL~~ya~~~~G~-----~veeArMIGVDrlGfDLRV 452 (470)
+.|..-+|+. |+++ .||.++|.+.... .+..++++-+||+-|--|.
T Consensus 1880 p~imAsiaaqsaaRa-ralealaarr~aaasrtP~aS~~~ierf~Pyrfssrs 1931 (3015)
T KOG0943|consen 1880 PMIMASIAAQSAARA-RALEALAARRAAAASRTPAASSAGIERFDPYRFSSRS 1931 (3015)
T ss_pred hhHHHHHhhHHHHHH-HHHHHHHhhccccccCCCcccCCCeeeeccccccchh
Confidence 3566777777 5554 6788888653322 2456889999998887654
No 12
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=41.86 E-value=16 Score=32.10 Aligned_cols=12 Identities=50% Similarity=0.694 Sum_probs=11.3
Q ss_pred eccCCCEEEEec
Q 012139 154 TDEHGNIYIQVK 165 (470)
Q Consensus 154 ~D~~GdiyFqv~ 165 (470)
+|++||.|||.+
T Consensus 6 ~D~~GN~YyE~~ 17 (105)
T PF05071_consen 6 TDEFGNKYYENP 17 (105)
T ss_pred EeCCCCEEEeec
Confidence 699999999998
No 13
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=38.55 E-value=28 Score=36.00 Aligned_cols=15 Identities=40% Similarity=0.849 Sum_probs=9.7
Q ss_pred cccccccceecccCc
Q 012139 231 DEDYDENWVNVLEDE 245 (470)
Q Consensus 231 dedy~~~~~~v~~d~ 245 (470)
++|.+++|+.|-+|+
T Consensus 111 d~Dd~~e~idv~~d~ 125 (324)
T PF05285_consen 111 DSDDEGEWIDVESDE 125 (324)
T ss_pred cccccCCcccccchh
Confidence 334467888887663
No 14
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.67 E-value=19 Score=39.20 Aligned_cols=8 Identities=25% Similarity=0.879 Sum_probs=5.6
Q ss_pred hHHHHHHH
Q 012139 267 MYFAKKLS 274 (470)
Q Consensus 267 ~yFAk~l~ 274 (470)
|||+-.+.
T Consensus 310 i~f~~~~e 317 (514)
T KOG3130|consen 310 IYFSHTVE 317 (514)
T ss_pred cccccccC
Confidence 88876654
No 15
>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
Probab=29.91 E-value=30 Score=31.51 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=11.5
Q ss_pred eccCCCEEEEecC
Q 012139 154 TDEHGNIYIQVKN 166 (470)
Q Consensus 154 ~D~~GdiyFqv~~ 166 (470)
+|++||.|||.++
T Consensus 15 ~D~~GNkYYE~~~ 27 (115)
T PLN03095 15 EDEFGNKYYENPS 27 (115)
T ss_pred EcCCCCeeeEcCC
Confidence 6999999999874
No 16
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=26.71 E-value=21 Score=41.48 Aligned_cols=19 Identities=5% Similarity=-0.018 Sum_probs=0.0
Q ss_pred eecc-ccchhhHHHHhhccc
Q 012139 299 RPAL-IEEHSDIQRHRSSNQ 317 (470)
Q Consensus 299 rpa~-~eE~s~ir~~~~~~~ 317 (470)
.+|| ..++...|..|+.-.
T Consensus 732 ~RAfPT~aek~~r~vy~d~L 751 (787)
T PF03115_consen 732 KRAFPTLAEKERRNVYMDAL 751 (787)
T ss_dssp --------------------
T ss_pred hccCCCchhhhhhhhHHhhh
Confidence 3444 366666677766554
No 17
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=24.20 E-value=38 Score=28.33 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=15.8
Q ss_pred eeccCCCEEEEecCchhHhhhh
Q 012139 153 VTDEHGNIYIQVKNEEDILQSL 174 (470)
Q Consensus 153 ~~D~~GdiyFqv~~d~~il~~~ 174 (470)
-+|+.|+|||.-++ +++++.+
T Consensus 42 wiDe~G~vYi~~s~-eel~~~L 62 (76)
T PF06970_consen 42 WIDENGNVYIIFSI-EELMELL 62 (76)
T ss_pred cCCCCCCEEEEeeH-HHHHHHH
Confidence 38999999997665 5566664
No 18
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=23.83 E-value=88 Score=27.04 Aligned_cols=37 Identities=30% Similarity=0.795 Sum_probs=29.7
Q ss_pred CCCCee---eccCCCEEEEecCchhHhhhhccCCCceEEEE
Q 012139 148 PDLPYV---TDEHGNIYIQVKNEEDILQSLISENNFVQVII 185 (470)
Q Consensus 148 ~e~~Y~---~D~~GdiyFqv~~d~~il~~~~~~nn~v~vii 185 (470)
+.+||+ ||.|||+ .-|+||+|+...+.+++-.+.++|
T Consensus 38 ~~~~f~i~Y~D~~gDL-LPInNDdNf~kAlssa~plLRl~i 77 (80)
T cd06403 38 PNVDFLIGYTDPHGDL-LPINNDDNFLKALSSANPLLRIFI 77 (80)
T ss_pred CCCcEEEEEeCCCCCE-ecccCcHHHHHHHHcCCCceEEEE
Confidence 346665 6999997 689999999999988866667766
No 19
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=23.29 E-value=1.9e+02 Score=28.66 Aligned_cols=75 Identities=17% Similarity=0.058 Sum_probs=54.0
Q ss_pred ccCCCCCeeEEEEEeeeccccchhhHH--HHhhccccCCCCCCccccccCCccccccccCCCCCCCCCCCCCcccccCCC
Q 012139 284 WMEQPPAGITIQGLLRPALIEEHSDIQ--RHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDK 361 (470)
Q Consensus 284 ~md~P~~glsI~G~lrpa~~eE~s~ir--~~~~~~~~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~~~~g~~~~~~~~~ 361 (470)
=|+--=++++|.|++.-+-.-++++-. .-+..+|..- ++|+
T Consensus 131 Pm~PtC~~~mlsG~v~k~~~~~~~~~~~~~alf~rHPem----~~w~--------------------------------- 173 (210)
T KOG3374|consen 131 PMEPTCARSMLSGQVKKMDPSDKSYQPSLDALFRRHPEM----INWV--------------------------------- 173 (210)
T ss_pred CCCchhhhheecceEEEeCCcchhhhhhhhhHhhcCHhH----cCCc---------------------------------
Confidence 366667899999999888744444333 2333344221 3333
Q ss_pred CCCCeEEEEEEeeeEEEecCCCcccccChhhhhc
Q 012139 362 PMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRK 395 (470)
Q Consensus 362 ~~~DFsFYRLe~erIrlIGGFGra~WVd~eDy~~ 395 (470)
+.|.|.|-.|++..|....=||.-+-|+++||-+
T Consensus 174 ~~hn~~~~~l~isni~vld~~ggp~~vs~~~yy~ 207 (210)
T KOG3374|consen 174 KAHNFYLCELEISNIFVLDFYGGPHKVSASDYYA 207 (210)
T ss_pred cccceEEEEEeeeeEEEEEecCCCcccCHHHhcc
Confidence 3488999999999999999999999999999864
No 20
>PLN02732 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
Probab=22.80 E-value=46 Score=31.90 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=11.8
Q ss_pred eccCCCEEEEecC
Q 012139 154 TDEHGNIYIQVKN 166 (470)
Q Consensus 154 ~D~~GdiyFqv~~ 166 (470)
+|++||.|||.++
T Consensus 54 ~D~~GNkYYE~~~ 66 (159)
T PLN02732 54 VDKFGNKYYQKLG 66 (159)
T ss_pred ecCCCCeeeecCC
Confidence 5999999999886
No 21
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.61 E-value=53 Score=39.39 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=15.1
Q ss_pred eeeccCCCEEEEecCchhHhhhh
Q 012139 152 YVTDEHGNIYIQVKNEEDILQSL 174 (470)
Q Consensus 152 Y~~D~~GdiyFqv~~d~~il~~~ 174 (470)
-...--|||-+-+-+-++.+.++
T Consensus 1307 VtFNstG~VmYa~~~~~d~~sdv 1329 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYAMLNIEDVMSDV 1329 (1516)
T ss_pred EEeccCccchhhhhhhhhhhhhh
Confidence 34456688777777666666665
No 22
>PRK08183 NADH dehydrogenase; Validated
Probab=21.86 E-value=52 Score=30.64 Aligned_cols=14 Identities=43% Similarity=0.786 Sum_probs=12.3
Q ss_pred eccCCCEEEEecCc
Q 012139 154 TDEHGNIYIQVKNE 167 (470)
Q Consensus 154 ~D~~GdiyFqv~~d 167 (470)
+|++||.|||.++.
T Consensus 31 ~D~~GNkYYE~~~~ 44 (133)
T PRK08183 31 EDEFGNVYYRTKGG 44 (133)
T ss_pred ecCCCCeeeecCCc
Confidence 59999999998864
No 23
>PRK06630 hypothetical protein; Provisional
Probab=20.42 E-value=38 Score=30.22 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=11.0
Q ss_pred eccCCCEEEEecC
Q 012139 154 TDEHGNIYIQVKN 166 (470)
Q Consensus 154 ~D~~GdiyFqv~~ 166 (470)
+|++||.|||-.+
T Consensus 18 ~D~~GNkYYE~~~ 30 (99)
T PRK06630 18 EDEFLNQYYESRN 30 (99)
T ss_pred EeCCCChhcccCC
Confidence 6999999999554
Done!