Query 012140
Match_columns 470
No_of_seqs 188 out of 859
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 23:28:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00029 hypothetical protein; 100.0 3E-139 6E-144 1091.8 28.9 320 103-470 6-325 (487)
2 COG0397 Uncharacterized conser 100.0 1E-135 3E-140 1047.7 26.4 323 101-470 4-326 (488)
3 PF02696 UPF0061: Uncharacteri 100.0 2E-134 3E-139 1057.2 28.1 315 126-470 10-330 (487)
4 KOG2542 Uncharacterized conser 100.0 4.6E-87 1E-91 676.5 10.9 236 209-461 2-238 (500)
5 KOG2542 Uncharacterized conser 97.8 4.4E-06 9.4E-11 87.5 -0.2 155 224-384 1-160 (500)
6 PF06293 Kdo: Lipopolysacchari 96.8 0.027 5.9E-07 53.0 13.0 150 245-469 57-206 (206)
7 PRK15123 lipopolysaccharide co 95.7 0.31 6.8E-06 48.7 14.4 158 245-469 74-231 (268)
8 KOG3087 Serine/threonine prote 90.3 1.6 3.5E-05 43.3 8.7 125 238-428 49-173 (229)
9 COG3642 Mn2+-dependent serine/ 85.0 0.93 2E-05 44.6 3.6 39 370-408 96-137 (204)
10 TIGR02172 Fb_sc_TIGR02172 Fibr 81.0 8 0.00017 37.4 8.3 30 245-274 38-67 (226)
11 PRK09902 hypothetical protein; 80.1 4 8.7E-05 40.4 5.9 165 220-469 48-213 (216)
12 cd00180 PKc Catalytic domain o 76.4 4.4 9.6E-05 34.6 4.5 47 367-413 93-144 (215)
13 PRK14879 serine/threonine prot 74.6 4.3 9.4E-05 37.0 4.2 45 368-412 97-144 (211)
14 PRK05231 homoserine kinase; Pr 68.5 25 0.00055 34.7 8.3 36 367-402 165-204 (319)
15 cd06621 PKc_MAPKK_Pek1_like Ca 63.6 12 0.00025 35.8 4.7 47 367-413 106-156 (287)
16 cd08530 STKc_CNK2-like Catalyt 63.6 10 0.00022 34.6 4.2 45 368-412 105-153 (256)
17 cd08215 STKc_Nek Catalytic dom 60.9 12 0.00025 34.0 4.0 47 367-413 104-154 (258)
18 PF01163 RIO1: RIO1 family; I 60.9 9.8 0.00021 36.3 3.7 40 365-407 109-151 (188)
19 TIGR02904 spore_ysxE spore coa 58.9 8.1 0.00018 38.4 2.9 26 384-413 195-220 (309)
20 cd05151 ChoK Choline Kinase (C 58.9 49 0.0011 28.8 7.5 67 373-469 90-164 (170)
21 cd08223 STKc_Nek4 Catalytic do 58.1 15 0.00032 33.8 4.3 46 368-413 104-153 (257)
22 cd07829 STKc_CDK_like Catalyti 56.5 23 0.0005 32.9 5.3 49 368-416 100-152 (282)
23 cd06632 STKc_MEKK1_plant Catal 55.6 14 0.0003 33.8 3.6 48 369-416 105-156 (258)
24 cd05120 APH_ChoK_like Aminogly 53.5 26 0.00057 28.6 4.6 43 369-411 89-138 (155)
25 cd06608 STKc_myosinIII_like Ca 49.0 18 0.0004 33.3 3.4 47 367-413 114-164 (275)
26 TIGR03724 arch_bud32 Kae1-asso 47.0 21 0.00046 32.3 3.4 31 370-400 94-124 (199)
27 cd05118 STKc_CMGC Catalytic do 46.8 18 0.00039 33.7 2.9 45 368-412 100-148 (283)
28 cd06612 STKc_MST1_2 Catalytic 46.8 25 0.00055 32.2 3.9 46 368-413 101-150 (256)
29 cd06605 PKc_MAPKK Catalytic do 46.6 15 0.00031 34.1 2.3 45 368-412 102-151 (265)
30 cd05583 STKc_MSK_N N-terminal 44.7 20 0.00043 34.0 2.9 40 369-408 108-151 (288)
31 PRK09605 bifunctional UGMP fam 44.0 89 0.0019 33.9 8.0 46 368-413 430-478 (535)
32 cd06626 STKc_MEKK4 Catalytic d 43.5 40 0.00086 31.1 4.6 46 368-413 101-150 (264)
33 cd08529 STKc_FA2-like Catalyti 43.3 37 0.0008 31.1 4.4 42 371-412 106-151 (256)
34 cd06610 STKc_OSR1_SPAK Catalyt 42.3 28 0.00061 32.0 3.5 47 368-414 104-154 (267)
35 cd06636 STKc_MAP4K4_6 Catalyti 41.9 24 0.00053 33.2 3.1 47 367-413 122-172 (282)
36 PF08757 CotH: CotH protein; 40.7 29 0.00063 34.0 3.5 37 222-270 36-72 (323)
37 cd05146 RIO3_euk RIO kinase fa 40.4 32 0.0007 33.3 3.6 33 365-400 127-159 (197)
38 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 40.0 51 0.0011 31.1 4.9 43 372-414 114-160 (284)
39 cd06623 PKc_MAPKK_plant_like C 39.6 28 0.0006 32.0 3.0 45 368-412 101-150 (264)
40 cd06917 STKc_NAK1_like Catalyt 39.6 40 0.00087 31.5 4.1 46 369-414 104-153 (277)
41 cd05041 PTKc_Fes_like Catalyti 39.5 35 0.00075 31.4 3.6 44 369-412 96-143 (251)
42 cd05037 PTK_Jak_rpt1 Pseudokin 39.4 42 0.00091 30.8 4.1 32 372-403 107-138 (259)
43 cd07838 STKc_CDK4_6_like Catal 39.3 41 0.00089 31.4 4.1 45 367-411 108-156 (287)
44 PRK11768 serine/threonine prot 39.3 2.4E+02 0.0052 28.6 9.9 47 364-416 174-221 (325)
45 cd05040 PTKc_Ack_like Catalyti 39.3 68 0.0015 29.6 5.5 45 370-414 101-149 (257)
46 cd05122 PKc_STE Catalytic doma 39.2 34 0.00073 30.7 3.4 46 368-413 100-149 (253)
47 cd06614 STKc_PAK Catalytic dom 39.0 33 0.00072 32.4 3.5 43 369-411 119-165 (286)
48 cd05114 PTKc_Tec_Rlk Catalytic 38.8 43 0.00094 31.0 4.2 45 368-412 102-150 (256)
49 smart00219 TyrKc Tyrosine kina 38.7 43 0.00093 30.5 4.0 44 370-413 107-154 (258)
50 cd07856 STKc_Sty1_Hog1 Catalyt 38.6 43 0.00094 33.1 4.4 46 369-414 111-160 (328)
51 cd07830 STKc_MAK_like Catalyti 38.5 50 0.0011 30.9 4.6 47 368-414 101-151 (283)
52 cd05572 STKc_cGK_PKG Catalytic 38.2 35 0.00076 31.6 3.5 47 368-414 95-145 (262)
53 cd05038 PTKc_Jak_rpt2 Catalyti 37.7 62 0.0013 30.1 5.0 45 369-413 112-160 (284)
54 cd06639 STKc_myosinIIIB Cataly 36.9 33 0.00072 32.5 3.2 46 367-412 129-178 (291)
55 cd05144 RIO2_C RIO kinase fami 36.8 52 0.0011 30.2 4.3 39 367-409 130-172 (198)
56 cd06638 STKc_myosinIIIA Cataly 36.3 37 0.00079 32.0 3.3 45 368-412 126-174 (286)
57 cd05063 PTKc_EphR_A2 Catalytic 36.2 68 0.0015 29.9 5.0 49 369-417 110-162 (268)
58 smart00090 RIO RIO-like kinase 35.9 41 0.00089 32.7 3.7 32 369-400 151-183 (237)
59 cd05085 PTKc_Fer Catalytic dom 35.6 45 0.00098 30.6 3.7 42 370-411 97-142 (250)
60 cd05087 PTKc_Aatyk1_Aatyk3 Cat 35.5 47 0.001 31.1 3.9 42 367-408 101-146 (269)
61 cd08220 STKc_Nek8 Catalytic do 35.0 56 0.0012 29.9 4.2 46 369-414 104-154 (256)
62 cd06635 STKc_TAO1 Catalytic do 35.0 54 0.0012 32.0 4.3 44 370-413 129-176 (317)
63 PHA03390 pk1 serine/threonine- 34.9 43 0.00093 31.8 3.5 44 369-412 112-160 (267)
64 cd06641 STKc_MST3 Catalytic do 34.8 38 0.00082 32.0 3.1 44 370-413 105-152 (277)
65 cd06613 STKc_MAP4K3_like Catal 34.8 47 0.001 30.5 3.7 44 370-413 105-152 (262)
66 cd07834 STKc_MAPK Catalytic do 34.6 39 0.00084 32.8 3.2 47 369-415 106-156 (330)
67 PRK12396 5-methylribose kinase 34.3 3.5E+02 0.0075 29.6 10.5 56 201-259 36-92 (409)
68 cd05083 PTKc_Chk Catalytic dom 34.2 50 0.0011 30.5 3.8 41 369-409 103-147 (254)
69 cd05044 PTKc_c-ros Catalytic d 34.1 54 0.0012 30.4 4.0 34 370-403 110-143 (269)
70 PLN00034 mitogen-activated pro 33.9 34 0.00075 34.0 2.8 46 368-413 170-219 (353)
71 cd08219 STKc_Nek3 Catalytic do 33.9 51 0.0011 30.4 3.8 45 369-413 103-151 (255)
72 cd07847 STKc_CDKL1_4 Catalytic 33.2 57 0.0012 30.5 4.0 47 368-414 102-152 (286)
73 PF12860 PAS_7: PAS fold 32.6 56 0.0012 27.3 3.5 76 144-219 14-99 (115)
74 PRK09550 mtnK methylthioribose 32.2 1.2E+02 0.0026 32.6 6.6 53 201-259 33-87 (401)
75 COG4136 ABC-type uncharacteriz 32.2 24 0.00053 34.4 1.4 29 232-264 161-189 (213)
76 cd06642 STKc_STK25-YSK1 Cataly 31.3 65 0.0014 30.3 4.1 47 368-414 103-153 (277)
77 cd06607 STKc_TAO Catalytic dom 31.3 67 0.0014 31.0 4.2 46 368-413 117-166 (307)
78 cd07833 STKc_CDKL Catalytic do 31.0 83 0.0018 29.5 4.7 48 369-416 103-154 (288)
79 cd06628 STKc_MAPKKK_Byr2_like 31.0 44 0.00095 31.0 2.8 44 369-412 109-156 (267)
80 PRK13799 unknown domain/N-carb 31.0 62 0.0013 36.1 4.4 67 192-277 238-307 (591)
81 cd06644 STKc_STK10_LOK Catalyt 30.8 55 0.0012 31.1 3.6 41 369-409 113-157 (292)
82 KOG1355 Adenylosuccinate synth 30.6 54 0.0012 35.4 3.6 92 295-417 172-273 (455)
83 cd05097 PTKc_DDR_like Catalyti 30.0 60 0.0013 31.0 3.7 44 368-411 131-178 (295)
84 cd08218 STKc_Nek1 Catalytic do 29.8 68 0.0015 29.6 3.9 42 371-412 106-151 (256)
85 PRK02561 psbF cytochrome b559 29.8 22 0.00048 27.4 0.5 15 255-269 21-35 (44)
86 cd08225 STKc_Nek5 Catalytic do 29.5 50 0.0011 30.3 2.9 42 370-411 105-151 (257)
87 cd05098 PTKc_FGFR1 Catalytic d 29.4 54 0.0012 31.6 3.3 45 368-412 142-190 (307)
88 cd05034 PTKc_Src_like Catalyti 29.3 75 0.0016 29.3 4.1 42 371-412 108-153 (261)
89 cd05079 PTKc_Jak1_rpt2 Catalyt 28.7 66 0.0014 30.5 3.7 33 370-402 113-145 (284)
90 cd05111 PTK_HER3 Pseudokinase 28.7 1.1E+02 0.0023 29.2 5.1 44 369-412 112-159 (279)
91 cd05066 PTKc_EphR_A Catalytic 28.5 72 0.0016 29.8 3.9 44 371-414 111-158 (267)
92 cd05050 PTKc_Musk Catalytic do 28.5 60 0.0013 30.8 3.3 38 370-407 134-175 (288)
93 PF00069 Pkinase: Protein kina 28.4 1.5E+02 0.0032 27.2 5.8 79 369-451 101-192 (260)
94 cd06627 STKc_Cdc7_like Catalyt 28.4 74 0.0016 28.9 3.8 48 369-416 102-153 (254)
95 cd05109 PTKc_HER2 Catalytic do 28.4 72 0.0016 30.1 3.8 41 372-412 115-159 (279)
96 cd05062 PTKc_IGF-1R Catalytic 28.3 69 0.0015 30.2 3.7 43 368-410 121-167 (277)
97 cd07867 STKc_CDC2L6 Catalytic 28.2 62 0.0013 31.1 3.4 47 367-413 109-163 (317)
98 cd08217 STKc_Nek2 Catalytic do 28.1 64 0.0014 29.4 3.4 45 370-414 109-162 (265)
99 cd05145 RIO1_like RIO kinase f 28.0 91 0.002 28.7 4.4 43 371-413 122-168 (190)
100 PRK01723 3-deoxy-D-manno-octul 28.0 1.2E+02 0.0025 29.6 5.3 80 372-469 148-233 (239)
101 cd05101 PTKc_FGFR2 Catalytic d 28.0 73 0.0016 30.6 3.9 46 368-413 139-188 (304)
102 cd06609 STKc_MST3_like Catalyt 27.6 55 0.0012 30.7 2.9 47 369-415 101-151 (274)
103 cd08229 STKc_Nek7 Catalytic do 27.5 72 0.0016 29.6 3.7 44 370-413 110-157 (267)
104 cd05056 PTKc_FAK Catalytic dom 27.5 79 0.0017 29.5 3.9 44 368-411 109-156 (270)
105 cd06615 PKc_MEK Catalytic doma 27.5 72 0.0016 30.9 3.8 45 368-412 101-150 (308)
106 cd06633 STKc_TAO3 Catalytic do 27.3 69 0.0015 31.2 3.6 41 370-410 125-169 (313)
107 cd07841 STKc_CDK7 Catalytic do 27.2 73 0.0016 30.2 3.7 44 369-412 105-152 (298)
108 cd06643 STKc_SLK Catalytic dom 26.6 86 0.0019 29.6 4.0 43 369-411 106-152 (282)
109 cd05075 PTKc_Axl Catalytic dom 26.4 73 0.0016 29.6 3.5 45 369-413 115-163 (272)
110 cd07864 STKc_CDK12 Catalytic d 26.4 62 0.0014 30.7 3.1 49 368-416 118-170 (302)
111 cd06640 STKc_MST4 Catalytic do 26.3 77 0.0017 29.9 3.7 44 370-413 105-152 (277)
112 cd05119 RIO RIO kinase family, 26.1 93 0.002 27.7 4.0 41 370-410 118-162 (187)
113 cd05067 PTKc_Lck_Blk Catalytic 26.0 70 0.0015 29.7 3.3 45 369-413 105-153 (260)
114 cd05047 PTKc_Tie Catalytic dom 26.0 83 0.0018 29.6 3.8 41 369-409 115-159 (270)
115 cd05060 PTKc_Syk_like Catalyti 25.8 87 0.0019 29.0 3.9 41 368-408 97-141 (257)
116 cd06646 STKc_MAP4K5 Catalytic 25.7 70 0.0015 29.8 3.2 43 370-412 110-156 (267)
117 cd05095 PTKc_DDR2 Catalytic do 25.7 96 0.0021 29.6 4.2 45 368-412 132-180 (296)
118 cd05113 PTKc_Btk_Bmx Catalytic 25.7 85 0.0018 29.3 3.8 44 369-412 103-150 (256)
119 cd05096 PTKc_DDR1 Catalytic do 25.7 1.1E+02 0.0025 29.3 4.7 45 369-413 141-189 (304)
120 PF09998 DUF2239: Uncharacteri 25.3 4E+02 0.0086 26.4 8.2 143 202-382 30-175 (187)
121 cd08221 STKc_Nek9 Catalytic do 25.3 92 0.002 28.7 3.9 45 368-412 103-151 (256)
122 cd07852 STKc_MAPK15 Catalytic 25.0 74 0.0016 31.2 3.4 43 370-412 111-157 (337)
123 cd07842 STKc_CDK8_like Catalyt 24.8 83 0.0018 30.0 3.6 47 367-413 109-163 (316)
124 cd07846 STKc_CDKL2_3 Catalytic 24.8 77 0.0017 29.7 3.3 43 368-410 102-148 (286)
125 cd07872 STKc_PCTAIRE2 Catalyti 24.8 63 0.0014 31.2 2.8 41 370-410 108-152 (309)
126 cd05147 RIO1_euk RIO kinase fa 24.8 82 0.0018 29.4 3.5 39 369-407 120-162 (190)
127 cd06652 STKc_MEKK2 Catalytic d 24.7 65 0.0014 30.0 2.8 42 371-412 111-156 (265)
128 smart00220 S_TKc Serine/Threon 24.6 1.1E+02 0.0024 27.0 4.2 47 364-414 89-139 (244)
129 cd06624 STKc_ASK Catalytic dom 24.5 96 0.0021 28.9 3.9 43 371-413 113-160 (268)
130 cd00192 PTKc Catalytic domain 24.5 1.3E+02 0.0028 27.4 4.6 51 362-416 105-159 (262)
131 COG2334 Putative homoserine ki 24.3 57 0.0012 34.1 2.6 51 364-417 173-226 (331)
132 cd05053 PTKc_FGFR Catalytic do 24.3 92 0.002 29.5 3.8 41 372-412 138-182 (293)
133 cd05042 PTKc_Aatyk Catalytic d 24.2 83 0.0018 29.4 3.4 43 367-409 101-147 (269)
134 cd06618 PKc_MKK7 Catalytic dom 24.0 82 0.0018 30.1 3.4 44 369-412 117-165 (296)
135 cd05632 STKc_GRK5 Catalytic do 24.0 69 0.0015 30.6 2.9 44 369-412 105-152 (285)
136 cd07851 STKc_p38 Catalytic dom 23.9 66 0.0014 31.9 2.8 44 369-412 121-168 (343)
137 cd07836 STKc_Pho85 Catalytic d 23.9 69 0.0015 30.0 2.8 45 369-413 103-151 (284)
138 cd07860 STKc_CDK2_3 Catalytic 23.6 98 0.0021 29.1 3.8 46 368-413 102-151 (284)
139 PF03077 VacA2: Putative vacuo 23.6 31 0.00067 28.3 0.4 19 383-401 1-19 (60)
140 cd06630 STKc_MEKK1 Catalytic d 23.3 79 0.0017 29.3 3.1 48 363-414 104-156 (268)
141 cd05112 PTKc_Itk Catalytic dom 23.2 1E+02 0.0023 28.3 3.8 41 366-410 104-148 (256)
142 cd05100 PTKc_FGFR3 Catalytic d 23.1 1E+02 0.0022 30.3 3.9 45 368-412 136-184 (334)
143 cd08228 STKc_Nek6 Catalytic do 23.0 91 0.002 28.9 3.4 42 372-413 112-157 (267)
144 cd06631 STKc_YSK4 Catalytic do 23.0 85 0.0018 29.2 3.2 43 370-412 106-152 (265)
145 PLN00009 cyclin-dependent kina 22.9 1.3E+02 0.0028 28.6 4.5 46 367-412 103-153 (294)
146 cd06616 PKc_MKK4 Catalytic dom 22.8 77 0.0017 29.9 2.9 45 368-412 109-158 (288)
147 cd06606 STKc_MAPKKK Catalytic 22.8 81 0.0018 28.4 3.0 46 369-414 104-153 (260)
148 cd06619 PKc_MKK5 Catalytic dom 22.7 82 0.0018 29.8 3.1 42 368-409 97-142 (279)
149 cd05090 PTKc_Ror1 Catalytic do 22.6 1E+02 0.0022 29.1 3.7 45 368-412 126-174 (283)
150 cd05613 STKc_MSK1_N N-terminal 22.6 2E+02 0.0044 27.2 5.8 44 369-412 108-155 (290)
151 cd05084 PTKc_Fes Catalytic dom 22.3 1.1E+02 0.0024 28.2 3.8 42 371-412 99-144 (252)
152 cd05076 PTK_Tyk2_rpt1 Pseudoki 22.1 1.7E+02 0.0037 27.9 5.1 33 369-401 120-152 (274)
153 cd07831 STKc_MOK Catalytic dom 22.0 1.3E+02 0.0028 28.1 4.3 44 369-412 103-149 (282)
154 PF07714 Pkinase_Tyr: Protein 22.0 1.5E+02 0.0033 27.9 4.7 47 369-415 106-153 (259)
155 cd05602 STKc_SGK1 Catalytic do 21.8 76 0.0017 31.1 2.8 41 369-409 99-143 (325)
156 cd05069 PTKc_Yes Catalytic dom 21.4 1.3E+02 0.0029 28.0 4.2 45 369-413 105-153 (260)
157 cd07832 STKc_CCRK Catalytic do 21.4 1.2E+02 0.0026 28.3 3.9 45 370-414 103-151 (286)
158 cd05065 PTKc_EphR_B Catalytic 21.3 1.6E+02 0.0036 27.4 4.8 45 370-414 110-158 (269)
159 KOG3404 G10 protein/predicted 21.2 95 0.0021 29.1 3.0 16 318-333 68-83 (145)
160 cd07862 STKc_CDK6 Catalytic do 21.0 85 0.0018 29.7 2.8 44 369-412 113-160 (290)
161 cd05070 PTKc_Fyn_Yrk Catalytic 20.9 2.3E+02 0.005 26.3 5.7 45 369-413 105-153 (260)
162 cd05116 PTKc_Syk Catalytic dom 20.9 1.4E+02 0.0031 27.7 4.3 44 371-414 100-147 (257)
163 cd05088 PTKc_Tie2 Catalytic do 20.8 1.1E+02 0.0025 29.5 3.7 40 369-408 127-170 (303)
164 cd06656 STKc_PAK3 Catalytic do 20.7 85 0.0019 30.3 2.8 44 365-412 118-165 (297)
165 cd05059 PTKc_Tec_like Catalyti 20.7 1.1E+02 0.0024 28.3 3.5 45 364-412 102-150 (256)
166 cd05051 PTKc_DDR Catalytic dom 20.7 1.3E+02 0.0028 28.4 4.0 43 369-411 133-179 (296)
167 cd07843 STKc_CDC2L1 Catalytic 20.6 90 0.002 29.6 2.9 41 370-410 110-154 (293)
168 cd05074 PTKc_Tyro3 Catalytic d 20.6 1.2E+02 0.0025 28.3 3.6 40 368-407 115-158 (273)
169 cd06637 STKc_TNIK Catalytic do 20.4 92 0.002 29.0 2.9 39 371-409 116-158 (272)
170 cd07849 STKc_ERK1_2_like Catal 20.4 81 0.0018 31.0 2.6 40 368-407 108-151 (336)
171 PF14855 PapJ: Pilus-assembly 20.4 88 0.0019 30.5 2.7 35 371-406 152-186 (187)
172 cd05071 PTKc_Src Catalytic dom 20.2 1.7E+02 0.0038 27.3 4.7 43 371-413 107-153 (262)
173 cd05614 STKc_MSK2_N N-terminal 20.2 89 0.0019 30.6 2.9 39 371-409 110-152 (332)
174 TIGR00938 thrB_alt homoserine 20.1 1.2E+02 0.0027 29.9 3.9 19 384-402 186-204 (307)
No 1
>PRK00029 hypothetical protein; Validated
Probab=100.00 E-value=2.8e-139 Score=1091.84 Aligned_cols=320 Identities=52% Similarity=0.870 Sum_probs=307.1
Q ss_pred ccCcccccccccCCCCCCCCCCCccccCcceEecCCCCCCCCCeEEeecHHHHHHCCCCCCCCCCCChhhhccCCCCCCC
Q 012140 103 EDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAG 182 (470)
Q Consensus 103 ~~l~~~n~~~~~lp~d~~~~~~~R~v~~~~ys~v~P~~~~~~P~lv~~n~~la~~LGLd~~~~~~~~~~~~fsGn~~~~g 182 (470)
..++|+|+|.+. ++.||++|.|++ +++|+||++|+++|++||||++++++++++++|+||.+++|
T Consensus 6 ~~~~~~~~~~~l--------------~~~~~~~v~p~~-~~~p~l~~~n~~la~~Lgld~~~~~~~~~~~~~sG~~~~~g 70 (487)
T PRK00029 6 LALPFDNRFARL--------------GPAFYTRVAPTP-FPAPRLRFRNDELAALLGLDPEELDDPEFAEVFGGNALLPG 70 (487)
T ss_pred ccCCCCCCHhhc--------------CccceeecCCcc-CCCCEEEEeCHHHHHHcCCCchhcCCHHHHHHhcCCCCCCC
Confidence 445688887653 359999999995 99999999999999999999998899999999999999999
Q ss_pred CchhhhhhccCCCCCCCCcCCCcceeeeeeeecCCCceEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCC
Q 012140 183 AVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIP 262 (470)
Q Consensus 183 ~~P~A~~YaGHQFG~fagqLGDGRAilLGEv~~~~G~r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIP 262 (470)
+.|+||||+|||||+|||||||||||+|||+++++|++|||||||||+|||||+|||||||||||||||||||||+||||
T Consensus 71 ~~P~A~~YaGHQFG~~~pqLGDGRailLGEv~~~~g~~~dlqLKGsG~TPySR~gDGRAvLrssiREyL~SEAMhaLGIP 150 (487)
T PRK00029 71 MEPLAMVYHGHQFGVYNPQLGDGRGILLGEVRDADGRLYDLQLKGAGRTPYSRMGDGRAVLRSSIREYLASEAMHALGIP 150 (487)
T ss_pred cchHHHHHhcccCCCCCCCCCCcceEEEEEEECCCCCEEEEeccCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCcccccccc
Q 012140 263 TTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKS 342 (470)
Q Consensus 263 TTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~ 342 (470)
||||||||+||++|+|+ +.||||||||||+|||||||||+|+++ ++.+.|++|+||||++|||++.+
T Consensus 151 TTRaLalv~tge~V~R~-------~~e~gAvl~RvA~ShiRfGtFe~~a~~--~~~~~l~~L~dy~I~~hyP~~~~---- 217 (487)
T PRK00029 151 TTRALSLVETGEPVYRE-------SPERGAVLTRVAPSHIRFGTFERFAYR--GDPELLRQLADYVIARHYPELAD---- 217 (487)
T ss_pred ccceEEEEecCCceecC-------CCCceeEEEEecCccccceeehhhhhc--CCHHHHHHHHHHHHHHHCccccc----
Confidence 99999999999999999 699999999999999999999999999 68999999999999999999976
Q ss_pred ccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCccC
Q 012140 343 ESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPN 422 (470)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v~n 422 (470)
.+++|++||++||+|||+|||+||+|||||||||||||||+|+|||||||||||.|||+||||
T Consensus 218 -----------------~~~~y~~~~~~Vv~rtA~lvA~Wq~vGFvHGVmNTDNmsI~GeTiDYGP~aFmd~ydp~~v~n 280 (487)
T PRK00029 218 -----------------AEDPYLALFAEVVERTARLIAQWQAVGFVHGVMNTDNMSILGETIDYGPYGFLDDYDPGFTCN 280 (487)
T ss_pred -----------------cccHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcCceeeeeeccCCchhhhhhcCCCcccc
Confidence 467899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCchHHHHHHHHHHHHhhccCCCCCHHHHHHHhhhcC
Q 012140 423 TTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV 470 (470)
Q Consensus 423 ~~D~~G~RYaf~nQP~i~~WNL~rLaeaL~p~pli~~~~~~~~L~~y~ 470 (470)
|||++| ||||+|||.|++|||+|||+||+| ||+.+.++++|++|+
T Consensus 281 ~~D~~G-RYaf~nQP~i~~WNL~rLa~aL~p--li~~~~~~~~L~~f~ 325 (487)
T PRK00029 281 HSDHQG-RYAFGNQPAIALWNLARLAQALLP--LIAVEALQAALDRFG 325 (487)
T ss_pred cCCCCc-cccccCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 999998 999999999999999999999997 998888999999884
No 2
>COG0397 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-135 Score=1047.73 Aligned_cols=323 Identities=48% Similarity=0.794 Sum_probs=310.6
Q ss_pred ccccCcccccccccCCCCCCCCCCCccccCcceEecCCCCCCCCCeEEeecHHHHHHCCCCCCCCCCCChhhhccCCCCC
Q 012140 101 ALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL 180 (470)
Q Consensus 101 ~~~~l~~~n~~~~~lp~d~~~~~~~R~v~~~~ys~v~P~~~~~~P~lv~~n~~la~~LGLd~~~~~~~~~~~~fsGn~~~ 180 (470)
....++|+++|..++ +.||+.|.|+| +++|+|+++|+.+|..|||++++++++.|+++|+|++++
T Consensus 4 ~~~~~~~~~r~~~l~--------------~~~~t~v~p~p-~~~~~L~~~n~~la~~LgL~~~~~~~~~~~~~f~G~~v~ 68 (488)
T COG0397 4 PQAALKFDPRFASLG--------------GEFYTPVTPAP-FPNPRLRWRNDRLAATLGLDPSLLDDEAFAEVFGGFQVL 68 (488)
T ss_pred cccccCccHHHHhhc--------------hhhhcCcCCcc-CCCceeeeeCHhHHHhcCCChHhccChhHHHHhccCCCC
Confidence 345677888888755 49999999996 999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhccCCCCCCCCcCCCcceeeeeeeecCCCceEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcC
Q 012140 181 AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLG 260 (470)
Q Consensus 181 ~g~~P~A~~YaGHQFG~fagqLGDGRAilLGEv~~~~G~r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLG 260 (470)
+|+.|+||+|+|||||+|||||||||+|+|||+++++|+++||||||||+|||||+|||||||||+|||||||||||+||
T Consensus 69 ~~~~plA~~Y~GhQFG~~~~qLGDGR~ilLgE~~~~~G~~~diqlKGaG~TPySR~gDGRAvLrssiRE~l~SEAmh~LG 148 (488)
T COG0397 69 NGAPPLAMRYSGHQFGVYNPQLGDGRGFLLGELRGADGELFDIQLKGAGRTPYSRGGDGRAVLRSSIREYLASEALHALG 148 (488)
T ss_pred CCCChhhhhhcccccccccCccCCceeeeeeeeecCCCcEEEEEeccCCCCCccccCCcchhhhhhHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCcccccc
Q 012140 261 IPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMN 340 (470)
Q Consensus 261 IPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~ 340 (470)
||||||||||.||++|+|+ ..||||||||||+|||||||||+|+++ ++.+.|++|+||||++|||++..
T Consensus 149 IpTTRaL~lv~tg~~v~Re-------~~ep~Avl~R~A~ShIRfGtFe~f~~~--~~~e~l~~LaD~vI~~~~p~~~~-- 217 (488)
T COG0397 149 IPTTRALSLVETGEPVQRE-------DEEPSAVLTRLAPSHIRFGTFERFAYR--DRRDLLRQLADHVIEHYFPDLAD-- 217 (488)
T ss_pred CCCcceeeeecCCCceecc-------ccccceEEEEecccceeeeccchhhhc--CChHHHHHHHHHHHHHhchhhhc--
Confidence 9999999999999999999 589999999999999999999999999 68999999999999999999984
Q ss_pred ccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCc
Q 012140 341 KSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFT 420 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v 420 (470)
..+++|++||++||+|||+|||+||+|||||||||||||||+|||||||||||||.|||+||
T Consensus 218 ------------------~~e~~Y~~~fr~Vv~R~A~lvA~Wqa~GF~HGVmNTDNmSI~GeTiDYGP~aFld~ydp~f~ 279 (488)
T COG0397 218 ------------------ESERPYAALFRAVVSRSARLVARWMAAGFVHGVLNTDNMSITGETFDYGPFAFLDRYDPNFV 279 (488)
T ss_pred ------------------cCcchHHHHHHHHHHHHHHHHHHHHHhccccceeccCCceeecccccccceecccCCCCCcc
Confidence 13678999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccCCchHHHHHHHHHHHHhhccCCCCCHHHHHHHhhhcC
Q 012140 421 PNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERFV 470 (470)
Q Consensus 421 ~n~~D~~G~RYaf~nQP~i~~WNL~rLaeaL~p~pli~~~~~~~~L~~y~ 470 (470)
|||+|+.| ||+|+|||.|++|||+|||++|+| ||+.+.++++|++|.
T Consensus 280 ~n~~D~~G-RY~f~nQP~I~~WNL~~LA~~L~p--li~~~~~~~aL~~y~ 326 (488)
T COG0397 280 ANHFDHAG-RYSFGNQPEIAFWNLQRLAGALSP--LIDQAALEAALNSFS 326 (488)
T ss_pred cccccccc-cccccCCchHHHHHHHHHHHHHHh--hccHHHHHHHHHHHH
Confidence 99999998 999999999999999999999997 999999999999984
No 3
>PF02696 UPF0061: Uncharacterized ACR, YdiU/UPF0061 family; InterPro: IPR003846 The proteins in this entry are functionally uncharacterised.
Probab=100.00 E-value=1.6e-134 Score=1057.17 Aligned_cols=315 Identities=57% Similarity=0.938 Sum_probs=295.6
Q ss_pred ccccCcceEecCCCCCCC---CCeEEeecHHHHHHCCCCCCCCCCCChhhh-ccCCCCCCC-CchhhhhhccCCCCCCCC
Q 012140 126 REVLHACYTKVSPSAEVE---NPQLVAWSESVADSLELDPKEFERPDFPLF-FSGATPLAG-AVPYAQCYGGHQFGMWAG 200 (470)
Q Consensus 126 R~v~~~~ys~v~P~~~~~---~P~lv~~n~~la~~LGLd~~~~~~~~~~~~-fsGn~~~~g-~~P~A~~YaGHQFG~fag 200 (470)
+.+...+|+.+.|+| ++ +|+||++|+++|++|||+++++++++++++ ++|+++++| +.|+||||+|||||+|+|
T Consensus 10 ~~~~~~~~~~~~p~~-~~~~~~p~lv~~n~~la~~Lgl~~~~~~~~~~~~~~~~g~~~~~g~~~p~A~~YaGHQFG~~~~ 88 (487)
T PF02696_consen 10 SALLSLFYSFVSPVP-PAPFPNPRLVAFNDDLAEELGLDPSELESPEFAEFVFSGNKLLPGSAEPLAQAYAGHQFGQFAP 88 (487)
T ss_pred HhhhccCCceecccc-CCCCCCCEEEEECHHHHHHcCCChhHcCChhHHHHhhhhhccCCCCcchHHHHHcCCCCCCCCC
Confidence 345567788877775 55 999999999999999999999999999987 899999999 999999999999999999
Q ss_pred cCCCcceeeeeeeecCCCceEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEEEecC-Ceeeec
Q 012140 201 QLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTG-KFVTRD 279 (470)
Q Consensus 201 qLGDGRAilLGEv~~~~G~r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tg-e~V~R~ 279 (470)
||||||||+|||+++.+|++|||||||||+|||||+|||||||||||||||||||||+||||||||||||+|+ +.|+|+
T Consensus 89 qLGDGRailLgE~~~~~g~~~dlqLKGaG~TPySR~gDGrAvLrssIREyL~SEAm~aLGIPTTRaLalv~t~~~~v~r~ 168 (487)
T PF02696_consen 89 QLGDGRAILLGEVRDPDGQRWDLQLKGAGRTPYSRGGDGRAVLRSSIREYLCSEAMHALGIPTTRALALVTTGEEPVRRE 168 (487)
T ss_pred ccCCcceEEeeeeecCCCcEEEEeccCCCCCCCccCCCCcchHHHHHHHHHHHHHHHhCCCCccceeEEEEcCCeeEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 677787
Q ss_pred cccCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCccccc
Q 012140 280 MFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDL 359 (470)
Q Consensus 280 ~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (470)
+.||||||||||||||||||||+|+++ ++.+.|++|+||||++||||+... ...
T Consensus 169 -------~~ep~Avv~RvA~S~iR~GsFe~~~~~--~~~~~l~~L~dy~i~~~~pe~~~~-----------------~~~ 222 (487)
T PF02696_consen 169 -------TPEPGAVVTRVAPSHIRFGSFEYFAYR--GDPEGLRQLADYVIKRHYPEIQGH-----------------LAD 222 (487)
T ss_pred -------CCCCceEEEeccccceeeeeeehhhhc--CCHHHHHHHHHHHHHHhCCccccc-----------------ccc
Confidence 689999999999999999999999999 689999999999999999986530 011
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCccCCCCCCCCccccCCchHH
Q 012140 360 TSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDI 439 (470)
Q Consensus 360 ~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v~n~~D~~G~RYaf~nQP~i 439 (470)
.+++|.+||++||+|||+|||+||+|||||||||||||||+|+|||||||||||.|||+|||||+|++| ||||+|||+|
T Consensus 223 ~~~~y~~~~~~v~~rtA~lvA~Wq~vGF~HGVmNTDNmsi~G~TiDYGP~aFmd~ydp~~v~n~~D~~g-RYaf~nQP~i 301 (487)
T PF02696_consen 223 DEDPYLALLREVVERTAELVAQWQAVGFCHGVMNTDNMSILGETIDYGPFAFMDDYDPNFVCNHSDHQG-RYAFGNQPSI 301 (487)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCeeeeeeEeccCccccccCCCCCceecccCCCC-cccccCcHHH
Confidence 456999999999999999999999999999999999999999999999999999999999999999988 9999999999
Q ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHhhhcC
Q 012140 440 GLWNIAQFSTTLAAAKLIDDKEANYVMERFV 470 (470)
Q Consensus 440 ~~WNL~rLaeaL~p~pli~~~~~~~~L~~y~ 470 (470)
++|||.|||+||.| ||+.++++++|++|+
T Consensus 302 ~~WNL~~La~aL~p--li~~~~l~~~L~~f~ 330 (487)
T PF02696_consen 302 ALWNLARLAEALLP--LIGEDQLEEALDEFE 330 (487)
T ss_pred HHHHHHHHHHHHHH--hcChHHHHHHHHHHH
Confidence 99999999999997 999999999999884
No 4
>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]
Probab=100.00 E-value=4.6e-87 Score=676.51 Aligned_cols=236 Identities=56% Similarity=0.871 Sum_probs=207.9
Q ss_pred eeeeeecCCCceEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEEEecC-CeeeeccccCCCCC
Q 012140 209 TLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTG-KFVTRDMFYDGNPK 287 (470)
Q Consensus 209 lLGEv~~~~G~r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tg-e~V~R~~~y~g~~~ 287 (470)
++|++....|++||+||||+|+|||||++||||||||||||||||||||+||||||||++++... ..+.|. +
T Consensus 2 l~gl~~t~tg~~~e~qlkgag~tpfsrfADgkavLrssirefLcseal~~lgipttra~a~~~legtvaqr~-------~ 74 (500)
T KOG2542|consen 2 LLGLVCTATGERWELQLKGAGPTPFSRFADGKAVLRSSIREFLCSEALFHLGIPTTRAGACVTLEGTVAQRP-------K 74 (500)
T ss_pred ccccCCCcccceeeeeeeccCCCchhhhccchHHhhhhHHHHHHHHHHhhcCCcchhhccccCCCccccccc-------c
Confidence 67888899999999999999999999999999999999999999999999999999999999874 555555 7
Q ss_pred CCCceeEEeccCCeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHH
Q 012140 288 EEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAW 367 (470)
Q Consensus 288 ~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~ 367 (470)
.||||||||+||||||||+|++|.++ .++..+.+|.||+++-.|........+ +-.++...|. .++.++|.+|
T Consensus 75 ~epcaVvcr~apswIr~g~f~lf~~~--~~h~gl~~lsdyc~~~~fk~gd~f~s~--~~~~~~~gd~---~~T~nryaaf 147 (500)
T KOG2542|consen 75 YEPCAVVCRVAPSWIRFGSFELFKSA--DEHTGLAGLSDYCNDIRFKLGDYFISS--FYPEIQAGDA---SDTVNRYAAF 147 (500)
T ss_pred ccceeEEEeecchhhhhhhhHHHhhH--hhhcccccccccchhhhcccCcccccc--cccccccccc---hhhhhHHHHH
Confidence 99999999999999999999999999 689999999999999877544321100 0001111111 1377999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCccCCCCCCCCccccCCchHHHHHHHHHH
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQF 447 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v~n~~D~~G~RYaf~nQP~i~~WNL~rL 447 (470)
|++|++|||++||+||+|||||||||||||||+|+|||||||||+|.|||+|||||+|..| ||+|.|||+|++|||.+|
T Consensus 148 freVa~rtA~tVA~WQavGF~hGVLNTDNmSIlGlTIDYGPFgFLD~ydPsftpNhdD~~g-RYsyanQPdIi~WNL~kl 226 (500)
T KOG2542|consen 148 FREVARRTARTVAEWQAVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDPSFTPNHDDNTG-RYSYANQPDIIRWNLRKL 226 (500)
T ss_pred HHHHHHHhhHHHHHHhhhcccccccccCCceeeeeeeccCCcccccccCCCCCCCCCCccc-ceeecCCCceeeehHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred HHhhccCCCCCHHH
Q 012140 448 STTLAAAKLIDDKE 461 (470)
Q Consensus 448 aeaL~p~pli~~~~ 461 (470)
|++|.| ||..+.
T Consensus 227 AkaLa~--llg~e~ 238 (500)
T KOG2542|consen 227 AKALAP--LLGLEL 238 (500)
T ss_pred HHHHHH--hcccch
Confidence 999996 776443
No 5
>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]
Probab=97.79 E-value=4.4e-06 Score=87.47 Aligned_cols=155 Identities=9% Similarity=-0.107 Sum_probs=120.7
Q ss_pred eeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeee
Q 012140 224 QLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 303 (470)
Q Consensus 224 QLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIR 303 (470)
+|+|.+.|++++..++.++.+++++++.+++-||-|++++++.||.-....-+.+++++.+.+..|++.+ +..+
T Consensus 1 ~l~gl~~t~tg~~~e~qlkgag~tpfsrfADgkavLrssirefLcseal~~lgipttra~a~~~legtva------qr~~ 74 (500)
T KOG2542|consen 1 MLLGLVCTATGERWELQLKGAGPTPFSRFADGKAVLRSSIREFLCSEALFHLGIPTTRAGACVTLEGTVA------QRPK 74 (500)
T ss_pred CccccCCCcccceeeeeeeccCCCchhhhccchHHhhhhHHHHHHHHHHhhcCCcchhhccccCCCcccc------cccc
Confidence 5899999999999999999999999999999999999999999999999999999999999988888776 7889
Q ss_pred eccchhccccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCccccc---chh--HHHHHHHHHHHHHHHH
Q 012140 304 FGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDL---TSN--KYAAWAVEVAERTASL 378 (470)
Q Consensus 304 fGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~y~a~~~eVv~RtA~L 378 (470)
++...+..++++.......-.+++.+++|++.+..+....++.|..+.+..+-... +.+ .-..=+.+..+..|+.
T Consensus 75 ~epcaVvcr~apswIr~g~f~lf~~~~~h~gl~~lsdyc~~~~fk~gd~f~s~~~~~~~~gd~~~T~nryaaffreVa~r 154 (500)
T KOG2542|consen 75 YEPCAVVCRVAPSWIRFGSFELFKSADEHTGLAGLSDYCNDIRFKLGDYFISSFYPEIQAGDASDTVNRYAAFFREVARR 154 (500)
T ss_pred ccceeEEEeecchhhhhhhhHHHhhHhhhcccccccccchhhhcccCcccccccccccccccchhhhhHHHHHHHHHHHH
Confidence 99999988887667777888999999999998875444455667766555431000 011 1233345555555555
Q ss_pred HHHHHH
Q 012140 379 VAQWQG 384 (470)
Q Consensus 379 VA~Wq~ 384 (470)
-|.=.+
T Consensus 155 tA~tVA 160 (500)
T KOG2542|consen 155 TARTVA 160 (500)
T ss_pred hhHHHH
Confidence 555433
No 6
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=96.79 E-value=0.027 Score=53.02 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHH
Q 012140 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTL 324 (470)
Q Consensus 245 SsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~L 324 (470)
.+.|||-..+.|+.+||||.+.++........ ...+.++|+--+. ...|
T Consensus 57 ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~-----------~~~s~lite~l~~--------------------~~~L 105 (206)
T PF06293_consen 57 RAKREWRNLQRLREAGIPTPEPVAYGERRKGG-----------GYRSYLITEALPG--------------------AQDL 105 (206)
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCC-----------ceeEEEEEEeCCC--------------------cccH
Confidence 48999999999999999999999996543111 1233445543321 1123
Q ss_pred HHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeee
Q 012140 325 ADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTI 404 (470)
Q Consensus 325 aDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TI 404 (470)
.++..+..- .. .+.-++++++.|++||+=-..|++||=||+-|+-|....
T Consensus 106 ~~~~~~~~~--~~---------------------------~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~- 155 (206)
T PF06293_consen 106 RDLLQQWEQ--LD---------------------------PSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDD- 155 (206)
T ss_pred HHHHHhhcc--cc---------------------------hhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCC-
Confidence 333332111 00 123477888899999999999999999999999998876
Q ss_pred cccccccccCCCCCCccCCCCCCCCccccCCchHHHHHHHHHHHHhhccCCCCCHHHHHHHhhhc
Q 012140 405 DYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF 469 (470)
Q Consensus 405 DYGPfaFmD~fdP~~v~n~~D~~G~RYaf~nQP~i~~WNL~rLaeaL~p~pli~~~~~~~~L~~y 469 (470)
|++ -+.-||-+.-+..-. -+.-..=||++|-.++.. .-+++++....|..|
T Consensus 156 --~~~----------~~~lIDld~~~~~~~-~~~~~~~dL~~L~rs~~~-~~~~~~d~~~fl~~Y 206 (206)
T PF06293_consen 156 --GQY----------RFYLIDLDRMRFRPS-SRRWRAKDLARLLRSLLR-SGWSERDRQRFLRGY 206 (206)
T ss_pred --Cce----------eEEEEcchhceeCCC-ChHHHHHhHHHHHHhccc-cCCCHHHHHHHHhhC
Confidence 221 122234321122111 333444699999999763 356788888888776
No 7
>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional
Probab=95.71 E-value=0.31 Score=48.70 Aligned_cols=158 Identities=12% Similarity=0.095 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHH
Q 012140 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTL 324 (470)
Q Consensus 245 SsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~L 324 (470)
...|||-+-+.|+.+||||...++....... +....+-++|+-.+. ...++
T Consensus 74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~----------~~~~~s~LVte~l~~-----------------~~sL~-- 124 (268)
T PRK15123 74 GADREWRAIHRLHEVGVDTMTGVAFGERGSN----------PATRTSFIITEDLAP-----------------TISLE-- 124 (268)
T ss_pred HHHHHHHHHHHHHHcCCCCCCeeEEEEecCC----------CccceeEEEEeeCCC-----------------CccHH--
Confidence 4789999999999999999999887432210 012345566654321 11122
Q ss_pred HHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeeee
Q 012140 325 ADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTI 404 (470)
Q Consensus 325 aDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TI 404 (470)
|++-+.. . . ....+.-+++++..|++|++--..|++||=||+-|+-|-..+.
T Consensus 125 -~~~~~~~--~--~-----------------------~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~ 176 (268)
T PRK15123 125 -DYCADWA--T--N-----------------------PPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFP 176 (268)
T ss_pred -HHHHhhc--c--c-----------------------CCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEecccc
Confidence 2221110 0 0 0112345678888999999999999999999999999974210
Q ss_pred cccccccccCCCCCCccCCCCCCCCccccCCchHHHHHHHHHHHHhhccCCCCCHHHHHHHhhhc
Q 012140 405 DYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERF 469 (470)
Q Consensus 405 DYGPfaFmD~fdP~~v~n~~D~~G~RYaf~nQP~i~~WNL~rLaeaL~p~pli~~~~~~~~L~~y 469 (470)
+= +.+..+.-||-+.-+-.-.--+.-...||.+|--+..+ ..++..+....|..|
T Consensus 177 ~~---------~~~~~~~LIDl~r~~~~~~~~~~~r~~dL~~L~~s~~~-~~ls~~d~~~fl~~Y 231 (268)
T PRK15123 177 GR---------EEDLKLSVIDLHRAQIRARVPRRWRDKDLAGLYFSAMD-IGLTQRDILRFLRVY 231 (268)
T ss_pred CC---------CCCceEEEEECCcccccCCCChHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHH
Confidence 00 00122333443221111111234567899999877543 236666655555555
No 8
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=90.26 E-value=1.6 Score=43.35 Aligned_cols=125 Identities=22% Similarity=0.251 Sum_probs=84.8
Q ss_pred CCccchhhhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccCCeeeeccchhccccCCCC
Q 012140 238 DGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQED 317 (470)
Q Consensus 238 DGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d 317 (470)
|=+...+-+.+|-=..--++++|||..+-..+=.-+.+++=| || .
T Consensus 49 D~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME---------------------~~----------~---- 93 (229)
T KOG3087|consen 49 DQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYME---------------------FI----------D---- 93 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEE---------------------ec----------c----
Confidence 555667788889888889999999999988876555555554 22 1
Q ss_pred HHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCc
Q 012140 318 LDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNM 397 (470)
Q Consensus 318 ~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNm 397 (470)
.-..+.+|++.+.-++..+ +.+.+++++..+.|++--.-+.|||=|.|.||
T Consensus 94 --g~~~vk~~i~~~~~~~~~d---------------------------~~~~~~~~~iG~~igklH~ndiiHGDLTTSNi 144 (229)
T KOG3087|consen 94 --GASTVKDFILSTMEDESED---------------------------EGLAELARRIGELIGKLHDNDIIHGDLTTSNI 144 (229)
T ss_pred --chhHHHHHHHHHccCcccc---------------------------hhHHHHHHHHHHHHHHhhhCCeecccccccce
Confidence 1234668877765333221 23477888889999999999999999999999
Q ss_pred eeEeeeecccccccccCCCCCCccCCCCCCC
Q 012140 398 SILGLTIDYGPFGFLDAFDPSFTPNTTDLPG 428 (470)
Q Consensus 398 SI~G~TIDYGPfaFmD~fdP~~v~n~~D~~G 428 (470)
-+---.-++=| ++..|--.++.+...+.|
T Consensus 145 ll~~~~~~~~~--~lIdfgls~~s~~~EDKg 173 (229)
T KOG3087|consen 145 LLRSDGNQITP--ILIDFGLSSVSRLPEDKG 173 (229)
T ss_pred EEecCCCcCce--EEEeecchhcccCccccc
Confidence 87543333222 344555556655544444
No 9
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.03 E-value=0.93 Score=44.59 Aligned_cols=39 Identities=31% Similarity=0.526 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEee---eecccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL---TIDYGP 408 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~---TIDYGP 408 (470)
.++++.-++|++--..|+|||=+.|.||-+.|. -||||=
T Consensus 96 ~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~i~~IDfGL 137 (204)
T COG3642 96 DLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGRIYFIDFGL 137 (204)
T ss_pred HHHHHHHHHHHHHHhcCeecCCCccceEEEeCCcEEEEECCc
Confidence 466778889999999999999999999999998 788884
No 10
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=81.03 E-value=8 Score=37.38 Aligned_cols=30 Identities=40% Similarity=0.530 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhhhcCCCccceeEEEecCC
Q 012140 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGK 274 (470)
Q Consensus 245 SsIREyL~SEAMhaLGIPTTRALalv~tge 274 (470)
+.-|||-+...++.+|+|+.+.+.+...++
T Consensus 38 ~i~~E~~~l~~l~~~glpvP~~~~~~~~~~ 67 (226)
T TIGR02172 38 TIKREFDASRKVFSLGIPTPHPFDLVEDGG 67 (226)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEecCC
Confidence 468999999999999999999999986553
No 11
>PRK09902 hypothetical protein; Provisional
Probab=80.06 E-value=4 Score=40.39 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=96.3
Q ss_pred eEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccccCCCCCCCCceeEEeccC
Q 012140 220 RWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQ 299 (470)
Q Consensus 220 r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~y~g~~~~EpgAVv~RvA~ 299 (470)
+.+=||+|+=+=|+ |++ +-.|||..-+.|+.+|||+.+..+-- +.|.. ..-.+-+||+--
T Consensus 48 rq~nhl~~s~r~P~-----g~p---tf~rE~~~L~~L~~~GvPVP~pvf~~-----~~k~~------~~~rA~LVTe~L- 107 (216)
T PRK09902 48 RMTHHLFHSVRYPF-----GRP---TIVREVAVIKELERAGVIVPKIVFGE-----AVKIE------GEWRALLVTEDM- 107 (216)
T ss_pred eccCcccccccCCC-----Cch---HHHHHHHHHHHHHHcCCCCCccceee-----eeccC------CceEEEEEEEeC-
Confidence 34556777766676 344 35799999999999999998876431 11110 122334455411
Q ss_pred CeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 012140 300 SFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLV 379 (470)
Q Consensus 300 ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~~~eVv~RtA~LV 379 (470)
+.-+.|.+++.+.--.. +-.++-+.+..+.|++|
T Consensus 108 -------------------~g~~~L~~~l~~~~~~~---------------------------~~~~~k~~il~~va~~i 141 (216)
T PRK09902 108 -------------------AGFISIADWYAQHAVSP---------------------------YSDEVRQAMLKAVALAF 141 (216)
T ss_pred -------------------CCCccHHHHHhcCCcCC---------------------------cchHHHHHHHHHHHHHH
Confidence 11233666644421110 11234467788899999
Q ss_pred HHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCccCCCCCCCCcccc-CCchHHHHHHHHHHHHhhccCCCCC
Q 012140 380 AQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCF-ANQPDIGLWNIAQFSTTLAAAKLID 458 (470)
Q Consensus 380 A~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v~n~~D~~G~RYaf-~nQP~i~~WNL~rLaeaL~p~pli~ 458 (470)
++=-..|.+||=+|--|+.+-..- +| ..+|+| -+-.|..+ ..+. ..=.|.+|..-+. -++
T Consensus 142 a~LH~~Gv~Hgdly~khIll~~~g-~~-~v~lID------------lEk~r~~l~~~~~--~~~Dl~~l~r~~~---~~s 202 (216)
T PRK09902 142 KKMHSVNRQHGCCYVRHIYVKTEG-KA-EAGFLD------------LEKSRRRLRRDKA--INHDFRQLEKYLE---PIP 202 (216)
T ss_pred HHHHHCCCcCCCCCHhheeecCCC-Ce-eEEEEE------------hhccchhhhhhhh--hHhHHHHHHHhcc---CCC
Confidence 999999999999999999885211 11 345544 12113333 2222 3346777774443 366
Q ss_pred HHHHHHHhhhc
Q 012140 459 DKEANYVMERF 469 (470)
Q Consensus 459 ~~~~~~~L~~y 469 (470)
+.+....|..|
T Consensus 203 ~~~~~~~~~~y 213 (216)
T PRK09902 203 KADWEQVKAYY 213 (216)
T ss_pred HHHHHHHHHHH
Confidence 77777777665
No 12
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=76.43 E-value=4.4 Score=34.59 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEe--e---eeccccccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG--L---TIDYGPFGFLD 413 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G--~---TIDYGPfaFmD 413 (470)
....++...++.++.....|++||-++.+|+-+.. . -+|||-+.+..
T Consensus 93 ~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~ 144 (215)
T cd00180 93 EILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLT 144 (215)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEcc
Confidence 45567777788888888899999999999999987 2 35666665543
No 13
>PRK14879 serine/threonine protein kinase; Provisional
Probab=74.61 E-value=4.3 Score=36.99 Aligned_cols=45 Identities=33% Similarity=0.538 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee---ecccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT---IDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T---IDYGPfaFm 412 (470)
...++...+..++.+...|++||=++.+|+-+.+.+ ||+|-..+.
T Consensus 97 ~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~~~~~~liDf~~a~~~ 144 (211)
T PRK14879 97 ELELSREIGRLVGKLHSAGIIHGDLTTSNMILSGGKIYLIDFGLAEFS 144 (211)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCCcccEEEECCCEEEEECCcccCC
Confidence 345556677888999999999999999999886433 577766553
No 14
>PRK05231 homoserine kinase; Provisional
Probab=68.54 E-value=25 Score=34.66 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHH--HH--HHhhcccccccCCCceeEee
Q 012140 367 WAVEVAERTASLVA--QW--QGVGFTHGVLNTDNMSILGL 402 (470)
Q Consensus 367 ~~~eVv~RtA~LVA--~W--q~vGF~HGVmNTDNmSI~G~ 402 (470)
.+.+++++....+. .| ...|+|||=++.+|+-+.|.
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~lp~~liHgD~~~~Nil~~~~ 204 (319)
T PRK05231 165 LLEAELAAQLAFLASAAWPALPRGVIHADLFRDNVLFEGD 204 (319)
T ss_pred HHHHHHHHHHHhhhccccccCCcccCCCCCCCCcEEEECC
Confidence 44444444433333 23 56799999999999998764
No 15
>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=63.59 E-value=12 Score=35.75 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
....++...+.-++.+...|++||-++.+|+.+... -+|||=+..+.
T Consensus 106 ~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~ 156 (287)
T cd06621 106 VLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELV 156 (287)
T ss_pred HHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeecccccccc
Confidence 456677778888888899999999999999988754 37888765544
No 16
>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an
Probab=63.56 E-value=10 Score=34.63 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
+..++...+.-++.....|++||-+|.+|+-|.... +|||-+-.+
T Consensus 105 ~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~ 153 (256)
T cd08530 105 IWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVL 153 (256)
T ss_pred HHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhh
Confidence 445555666777777899999999999999988644 777755443
No 17
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=60.87 E-value=12 Score=34.02 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeeccccccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFLD 413 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFmD 413 (470)
.+.+++...++-++.....|++||-++.+|+.|.. .-+|||...+.+
T Consensus 104 ~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~ 154 (258)
T cd08215 104 QILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLS 154 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecc
Confidence 35666777888888889999999999999999875 235777655543
No 18
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=60.86 E-value=9.8 Score=36.34 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEee---eeccc
Q 012140 365 AAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL---TIDYG 407 (470)
Q Consensus 365 ~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~---TIDYG 407 (470)
..++.++++ .++..+++.|++||=|++-|+-+..- -||+|
T Consensus 109 ~~~~~~il~---~~~~~~~~~givHGDLs~~NIlv~~~~~~iIDf~ 151 (188)
T PF01163_consen 109 KELLEEILE---EIIKMLHKAGIVHGDLSEYNILVDDGKVYIIDFG 151 (188)
T ss_dssp HHHHHHHHH---HHHHHHHCTTEEESS-STTSEEEETTCEEE--GT
T ss_pred HHHHHHHHH---HHHHHHHhcCceecCCChhhEEeecceEEEEecC
Confidence 445555554 46666899999999999999998754 34554
No 19
>TIGR02904 spore_ysxE spore coat protein YsxE. Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.
Probab=58.94 E-value=8.1 Score=38.43 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=20.7
Q ss_pred HhhcccccccCCCceeEeeeeccccccccc
Q 012140 384 GVGFTHGVLNTDNMSILGLTIDYGPFGFLD 413 (470)
Q Consensus 384 ~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD 413 (470)
..|+|||=++.||+.+.|. |-.+++|
T Consensus 195 ~~~lcHgD~~~~Nvl~~~~----~~~~iID 220 (309)
T TIGR02904 195 RTVLVHGKLSLSHFLYDET----RGGYFIN 220 (309)
T ss_pred ceeeeCCCCcHHhEEEcCC----CCEEEEE
Confidence 5699999999999999653 3466766
No 20
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=58.91 E-value=49 Score=28.80 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhh-----cccccccCCCceeEee---eecccccccccCCCCCCccCCCCCCCCccccCCchHHHHHHH
Q 012140 373 ERTASLVAQWQGVG-----FTHGVLNTDNMSILGL---TIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNI 444 (470)
Q Consensus 373 ~RtA~LVA~Wq~vG-----F~HGVmNTDNmSI~G~---TIDYGPfaFmD~fdP~~v~n~~D~~G~RYaf~nQP~i~~WNL 444 (470)
+..++++++..+.+ ||||=++..|+.+.+- -||+|=.+. + --.|.|
T Consensus 90 ~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~~~~~~liDf~~a~~----------------------~----~~~~Dl 143 (170)
T cd05151 90 EKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLDDGRLWLIDWEYAGM----------------------N----DPLFDL 143 (170)
T ss_pred HHHHHHHHHHhCCCCCCceeecCCCCcCcEEEECCeEEEEecccccC----------------------C----ChHHHH
Confidence 34566666666666 6999999999987621 123322221 1 124666
Q ss_pred HHHHHhhccCCCCCHHHHHHHhhhc
Q 012140 445 AQFSTTLAAAKLIDDKEANYVMERF 469 (470)
Q Consensus 445 ~rLaeaL~p~pli~~~~~~~~L~~y 469 (470)
+.+...+. ++.++.++.|+.|
T Consensus 144 a~~~~~~~----~~~~~~~~~~~~y 164 (170)
T cd05151 144 ANFFSEAK----LSEDQEEELLEAY 164 (170)
T ss_pred HHHHHhcC----CCHHHHHHHHHHH
Confidence 66655543 5677788888877
No 21
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=58.12 E-value=15 Score=33.83 Aligned_cols=46 Identities=22% Similarity=0.129 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
...++...+..++.....|++||.++.+|+-|.... .|||=+.++.
T Consensus 104 ~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~ 153 (257)
T cd08223 104 VVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLE 153 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEec
Confidence 344555667777788899999999999999886533 6888766653
No 22
>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the
Probab=56.46 E-value=23 Score=32.95 Aligned_cols=49 Identities=14% Similarity=-0.000 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccCCC
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDAFD 416 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~fd 416 (470)
...++...++.++.....|++||-++.+|+-|... -.|||-+.++..-+
T Consensus 100 ~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~ 152 (282)
T cd07829 100 IKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPL 152 (282)
T ss_pred HHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCc
Confidence 34556667777888888999999999999998753 26888777665433
No 23
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=55.55 E-value=14 Score=33.82 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccccCCC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLDAFD 416 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD~fd 416 (470)
..++.+.++.++.....|++||-++.+|+-+.-.. +|||-+..+....
T Consensus 105 ~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~ 156 (258)
T cd06632 105 RLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS 156 (258)
T ss_pred HHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccc
Confidence 34456677788888899999999999999886433 7888777665544
No 24
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=53.49 E-value=26 Score=28.62 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHH---hhcccccccCCCceeEee----eeccccccc
Q 012140 369 VEVAERTASLVAQWQG---VGFTHGVLNTDNMSILGL----TIDYGPFGF 411 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~---vGF~HGVmNTDNmSI~G~----TIDYGPfaF 411 (470)
.+++...++.++.+.. .|++||=++.+|+-|... -+|+|-+.+
T Consensus 89 ~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~ 138 (155)
T cd05120 89 EDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY 138 (155)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence 3445556666677766 489999999999998651 245554443
No 25
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=48.96 E-value=18 Score=33.27 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
....++...++.++.....|++||-++.+|+.|... -+|||-+.++.
T Consensus 114 ~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~ 164 (275)
T cd06608 114 WIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLD 164 (275)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccceecc
Confidence 345566667777788889999999999999998643 36777665543
No 26
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=47.05 E-value=21 Score=32.29 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeE
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSIL 400 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~ 400 (470)
.++...++.++.....|++||=++.+|+-+.
T Consensus 94 ~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~ 124 (199)
T TIGR03724 94 ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR 124 (199)
T ss_pred HHHHHHHHHHHHHHHCCeecCCCCcceEEEE
Confidence 5667788888999999999999999999885
No 27
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=46.79 E-value=18 Score=33.71 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
...++...++-++.+...|++||-++.+|+.|... -+|||....+
T Consensus 100 ~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~ 148 (283)
T cd05118 100 IKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSF 148 (283)
T ss_pred HHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEec
Confidence 34455667777888889999999999999999752 2577754433
No 28
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=46.78 E-value=25 Score=32.17 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
...++...++-++.....|++||-++.+|+-+.... .|+|-+-.+.
T Consensus 101 ~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~ 150 (256)
T cd06612 101 IAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLT 150 (256)
T ss_pred HHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcc
Confidence 345566667777788889999999999999886543 6777655443
No 29
>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity
Probab=46.57 E-value=15 Score=34.05 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHH-hhcccccccCCCceeEee----eecccccccc
Q 012140 368 AVEVAERTASLVAQWQG-VGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~-vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
...++...++-++.... .|++||-++.+|+.|.-. -+|||-+..+
T Consensus 102 ~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~ 151 (265)
T cd06605 102 LGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQL 151 (265)
T ss_pred HHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhh
Confidence 44567777788888888 999999999999988642 2677765544
No 30
>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines
Probab=44.73 E-value=20 Score=33.98 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGP 408 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGP 408 (470)
..++...++-++.....|++||-++.+|+-|... -+|||=
T Consensus 108 ~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~ 151 (288)
T cd05583 108 RVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGL 151 (288)
T ss_pred HHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECcc
Confidence 3445566777777789999999999999988643 367773
No 31
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=44.04 E-value=89 Score=33.90 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEe---eeeccccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG---LTIDYGPFGFLD 413 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G---~TIDYGPfaFmD 413 (470)
..+++...|+.++.....|++||=++.+|+-|.. .-||+|=+.+.+
T Consensus 430 ~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl~~~~~~liDFGla~~~~ 478 (535)
T PRK09605 430 NPELVRKVGEIVAKLHKAGIVHGDLTTSNFIVRDDRLYLIDFGLGKYSD 478 (535)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCCCChHHEEEECCcEEEEeCcccccCC
Confidence 4667788889999999999999999999999932 126777777654
No 32
>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4
Probab=43.48 E-value=40 Score=31.07 Aligned_cols=46 Identities=15% Similarity=0.021 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
...++...++-++.+...|++||=++++|+-+.... .|||-...+.
T Consensus 101 ~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~ 150 (264)
T cd06626 101 IRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLK 150 (264)
T ss_pred HHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccC
Confidence 445666777888888999999999999999886533 6777655543
No 33
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=43.33 E-value=37 Score=31.11 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
++...++-++.-...|++||-++.+|+-|.... .|+|-+..+
T Consensus 106 i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~ 151 (256)
T cd08529 106 FFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLL 151 (256)
T ss_pred HHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceec
Confidence 344455555666678999999999999887532 577755443
No 34
>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase. Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1
Probab=42.31 E-value=28 Score=32.02 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccC
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDA 414 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~ 414 (470)
...++...+..++.+...|++||-++.+|+.|.-. -+|||-+.++..
T Consensus 104 ~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~ 154 (267)
T cd06610 104 IATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLAD 154 (267)
T ss_pred HHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhcc
Confidence 44566777888888999999999999999988732 258876665543
No 35
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=41.90 E-value=24 Score=33.18 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
+...++...++-++.....|++||-++.+|+.|.-. -+|||-+..++
T Consensus 122 ~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~ 172 (282)
T cd06636 122 WIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD 172 (282)
T ss_pred HHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhhhh
Confidence 345566667777778888999999999999998743 36887655443
No 36
>PF08757 CotH: CotH protein; InterPro: IPR014867 Members of this group include the Bacillus subtilis spore coat protein H (CotH). Assembly of CotH requires both CotE and GerE and is reuired for the correct assembly of both inner and outer layers of the coat. CotH appears to be a structural component of the coat being localised at the interface of the 2 coat layers [, , ].
Probab=40.72 E-value=29 Score=33.97 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=30.7
Q ss_pred EEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEEE
Q 012140 222 ELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLV 270 (470)
Q Consensus 222 elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALalv 270 (470)
++.|+..+ .| +|.|||.|+-+.++.+|+||.|+--+.
T Consensus 36 ~~~L~~~~-------~D-----~s~~R~~l~~~l~~~~g~~~p~~~~v~ 72 (323)
T PF08757_consen 36 KWILRANY-------ND-----PSYMRERLAYDLFRDMGVPAPRARYVE 72 (323)
T ss_pred EEEEECCC-------CC-----chHHHHHHHHHHHHHcCCCCcceEEEE
Confidence 67777543 34 799999999999999999999987664
No 37
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=40.36 E-value=32 Score=33.31 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeE
Q 012140 365 AAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSIL 400 (470)
Q Consensus 365 ~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~ 400 (470)
..++.++++..++| +...|.|||=+|+-||.+.
T Consensus 127 ~~i~~~i~~~l~~l---~H~~glVHGDLs~~NIL~~ 159 (197)
T cd05146 127 KNAYYQVLSMMKQL---YKECNLVHADLSEYNMLWH 159 (197)
T ss_pred HHHHHHHHHHHHHH---HHhCCeecCCCCHHHEEEE
Confidence 34556665555555 6788999999999999996
No 38
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=39.97 E-value=51 Score=31.07 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccccC
Q 012140 372 AERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLDA 414 (470)
Q Consensus 372 v~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD~ 414 (470)
+...++-++..-..|++||-++.+|+-|.... .|||-..++..
T Consensus 114 ~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~ 160 (284)
T cd05081 114 ASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQ 160 (284)
T ss_pred HHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccC
Confidence 33445555566678999999999999886533 68887776643
No 39
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=39.64 E-value=28 Score=31.98 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHH-hhcccccccCCCceeEeee----ecccccccc
Q 012140 368 AVEVAERTASLVAQWQG-VGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~-vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
...++...++.++.... .|++||-++.+|+-|.... +|||-...+
T Consensus 101 ~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~ 150 (264)
T cd06623 101 LAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVL 150 (264)
T ss_pred HHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceec
Confidence 34556677788888888 9999999999999986443 577755544
No 40
>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent
Probab=39.64 E-value=40 Score=31.54 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDA 414 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~ 414 (470)
..++...++-++..-..|++||-++.+|+-|... -+|||-..++..
T Consensus 104 ~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~ 153 (277)
T cd06917 104 SVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQ 153 (277)
T ss_pred HHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCC
Confidence 3445556666666778899999999999999743 378887666544
No 41
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=39.49 E-value=35 Score=31.36 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
.+++...+.-++..-..|++||-++.+|+-|.... +|||-....
T Consensus 96 ~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~ 143 (251)
T cd05041 96 LQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREE 143 (251)
T ss_pred HHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccc
Confidence 34445556666677788999999999999987544 788865544
No 42
>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=39.40 E-value=42 Score=30.79 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCceeEeee
Q 012140 372 AERTASLVAQWQGVGFTHGVLNTDNMSILGLT 403 (470)
Q Consensus 372 v~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T 403 (470)
+...+.-++.--..|++|+-++.+|+-+....
T Consensus 107 ~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~ 138 (259)
T cd05037 107 AKQLASALHYLEDKKLVHGNVCGKNILVARYG 138 (259)
T ss_pred HHHHHHHHHHHhhCCeecccCccceEEEecCc
Confidence 34444455555578999999999999987554
No 43
>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both
Probab=39.34 E-value=41 Score=31.38 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGF 411 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaF 411 (470)
....++...++-++..-..|++||-++.+|+-|.... .|||-+..
T Consensus 108 ~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~ 156 (287)
T cd07838 108 TIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARI 156 (287)
T ss_pred HHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCccee
Confidence 3455666777788888899999999999999887643 67665433
No 44
>PRK11768 serine/threonine protein kinase; Provisional
Probab=39.32 E-value=2.4e+02 Score=28.65 Aligned_cols=47 Identities=28% Similarity=0.241 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcccccccCCCceeEeeeecccccccccCCC
Q 012140 364 YAAWAVEVAERTASLVAQW-QGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFD 416 (470)
Q Consensus 364 y~a~~~eVv~RtA~LVA~W-q~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fd 416 (470)
+.+.+.++..+.++.++.+ ...|+|||=++.+|+-+. | |+ +|+|--|
T Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~liHgD~h~~NvL~~----d-~~-~iIDFDd 221 (325)
T PRK11768 174 YLAAADQLLAAVEACWARGDVRLLRLHGDCHPGNILWR----D-GP-HFVDLDD 221 (325)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccceecCCCchhcccc----C-Cc-EEEeCCC
Confidence 3344444444434444332 257999999999999983 3 43 4655433
No 45
>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=39.29 E-value=68 Score=29.57 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccccC
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLDA 414 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD~ 414 (470)
.++...++-++.....|++||-++.+|+-|.... +|||-.-.+..
T Consensus 101 ~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~ 149 (257)
T cd05040 101 DYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQ 149 (257)
T ss_pred HHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccc
Confidence 3444556666666788999999999999886433 57775555443
No 46
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=39.16 E-value=34 Score=30.73 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
...++...++-++.....|++||=++.+|+-|.... +|||-+..+.
T Consensus 100 ~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~ 149 (253)
T cd05122 100 IAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLS 149 (253)
T ss_pred HHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccc
Confidence 445667777778888889999999999999886432 5666555443
No 47
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=38.95 E-value=33 Score=32.44 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGF 411 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaF 411 (470)
..++...+..++.....|++||-++.+|+-|.-. -+|||-...
T Consensus 119 ~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~ 165 (286)
T cd06614 119 AYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQ 165 (286)
T ss_pred HHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhh
Confidence 4456667777778888999999999999988633 267775443
No 48
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=38.79 E-value=43 Score=31.01 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
...++...++-++..-..|++|+-++++|+-|.... .|||-..++
T Consensus 102 ~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~ 150 (256)
T cd05114 102 LLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYV 150 (256)
T ss_pred HHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCcccc
Confidence 344555566666677789999999999999997543 688866554
No 49
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=38.68 E-value=43 Score=30.54 Aligned_cols=44 Identities=20% Similarity=0.083 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
.++...+.-++..-..|++||-++.+|+-+.... +|+|=+.+..
T Consensus 107 ~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~ 154 (258)
T smart00219 107 SFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLY 154 (258)
T ss_pred HHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceecc
Confidence 3444445555555677999999999999998775 6777655544
No 50
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=38.58 E-value=43 Score=33.09 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeecccccccccC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFLDA 414 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFmD~ 414 (470)
..++...++-++.+-..|++||-++.+|+-+.. .-+|||-...++.
T Consensus 111 ~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~ 160 (328)
T cd07856 111 QYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDP 160 (328)
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCC
Confidence 445666777778888999999999999998753 2379987776654
No 51
>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili
Probab=38.54 E-value=50 Score=30.90 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccC
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDA 414 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~ 414 (470)
...++...++.++.....|++||-++.+|+.|... -.|||-..+++.
T Consensus 101 ~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~ 151 (283)
T cd07830 101 IRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRS 151 (283)
T ss_pred HHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccC
Confidence 34445556666666778899999999999999752 268886665543
No 52
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=38.19 E-value=35 Score=31.64 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccccC
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLDA 414 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD~ 414 (470)
...++...++-++..-..|++||-++.+|+-|.... +|+|-.-.+..
T Consensus 95 ~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~ 145 (262)
T cd05572 95 ARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKS 145 (262)
T ss_pred HHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCc
Confidence 345666677888888889999999999999886543 78887666544
No 53
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=37.67 E-value=62 Score=30.13 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
..++...++-++.....|++||-++.+|+-|.... .|||-...+.
T Consensus 112 ~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~ 160 (284)
T cd05038 112 LLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLP 160 (284)
T ss_pred HHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence 33455566677777889999999999999986543 6777666554
No 54
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=36.89 E-value=33 Score=32.51 Aligned_cols=46 Identities=11% Similarity=0.072 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
....++...+.-++.+...|++||-++.+|+-|.-. -+|||=...+
T Consensus 129 ~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~ 178 (291)
T cd06639 129 MISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQL 178 (291)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccchhc
Confidence 345566667778888889999999999999988533 2677755443
No 55
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=36.82 E-value=52 Score=30.20 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeeccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPF 409 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPf 409 (470)
++..+++..+.+ -..|++||=+++.|+-|.. --||||-+
T Consensus 130 ~~~~i~~~l~~l----h~~gi~H~Dl~p~Nill~~~~~~~liDfg~~ 172 (198)
T cd05144 130 VLDEILEEIVKA----YKHGIIHGDLSEFNILVDDDEKIYIIDWPQM 172 (198)
T ss_pred HHHHHHHHHHHH----HHCCCCcCCCCcccEEEcCCCcEEEEECCcc
Confidence 444444443333 3479999999999999964 23566643
No 56
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=36.28 E-value=37 Score=31.97 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
...++...++-++.....|++||-++.+|+.|.... +|||=.-.+
T Consensus 126 ~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~ 174 (286)
T cd06638 126 IAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQL 174 (286)
T ss_pred HHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCceeec
Confidence 344556667777788889999999999999887543 677744333
No 57
>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored
Probab=36.24 E-value=68 Score=29.86 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccCCCC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDAFDP 417 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~fdP 417 (470)
..++...+.-++.+-..|++||-++.+|+-|... -.|||=..++...+.
T Consensus 110 ~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~ 162 (268)
T cd05063 110 VGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPE 162 (268)
T ss_pred HHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceecccccc
Confidence 3455567777788888999999999999988653 368887777765443
No 58
>smart00090 RIO RIO-like kinase.
Probab=35.87 E-value=41 Score=32.73 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhh-cccccccCCCceeE
Q 012140 369 VEVAERTASLVAQWQGVG-FTHGVLNTDNMSIL 400 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vG-F~HGVmNTDNmSI~ 400 (470)
..++...+..++..-..| ++||=++.+|+-|.
T Consensus 151 ~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~ 183 (237)
T smart00090 151 FELYDDILEEMRKLYKEGELVHGDLSEYNILVH 183 (237)
T ss_pred HHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE
Confidence 455666778888888999 99999999999886
No 59
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=35.58 E-value=45 Score=30.59 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGF 411 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaF 411 (470)
.++...++-+.....-|++||=++.+|+-|... -+|||=...
T Consensus 97 ~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~ 142 (250)
T cd05085 97 KFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQ 142 (250)
T ss_pred HHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCcccee
Confidence 334455555666678899999999999999642 368875443
No 60
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=35.48 E-value=47 Score=31.12 Aligned_cols=42 Identities=21% Similarity=0.098 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGP 408 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGP 408 (470)
....++...|+-++.....|++|+=++.+|+-|.... .|||=
T Consensus 101 ~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~ 146 (269)
T cd05087 101 TLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGL 146 (269)
T ss_pred HHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccc
Confidence 3445566677777888899999999999999987642 57773
No 61
>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with
Probab=35.04 E-value=56 Score=29.92 Aligned_cols=46 Identities=15% Similarity=0.071 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee-----eecccccccccC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL-----TIDYGPFGFLDA 414 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~-----TIDYGPfaFmD~ 414 (470)
..++...++.++.....|++||-++.+|+-|... -.|||.+..+..
T Consensus 104 ~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~ 154 (256)
T cd08220 104 LHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSS 154 (256)
T ss_pred HHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCC
Confidence 4445566777777788999999999999999621 268888776653
No 62
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=35.00 E-value=54 Score=31.97 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
.++...|.-++.+...|++||-++.+|+-+.... +|+|-+..+.
T Consensus 129 ~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~ 176 (317)
T cd06635 129 AITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIAS 176 (317)
T ss_pred HHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccC
Confidence 3455567777888899999999999999987543 7888655443
No 63
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=34.87 E-value=43 Score=31.76 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEeee-----ecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT-----IDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T-----IDYGPfaFm 412 (470)
..++...++-++.....|++||-++.+|+-|.... +|+|=...+
T Consensus 112 ~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~ 160 (267)
T PHA03390 112 KKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKII 160 (267)
T ss_pred HHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceec
Confidence 34555667777888899999999999999987554 677744444
No 64
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=34.81 E-value=38 Score=32.00 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
..+...+..++.....|++||=++++|+-|.... +|||-...+.
T Consensus 105 ~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~ 152 (277)
T cd06641 105 TILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT 152 (277)
T ss_pred HHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecc
Confidence 4455556666666789999999999999987654 6887554443
No 65
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=34.77 E-value=47 Score=30.54 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
.++...+..++.....|++||=++.+|+-|.... .|||....++
T Consensus 105 ~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~ 152 (262)
T cd06613 105 YVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLT 152 (262)
T ss_pred HHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhh
Confidence 4444556666667788999999999999887543 7887655443
No 66
>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and
Probab=34.60 E-value=39 Score=32.81 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccccCC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLDAF 415 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD~f 415 (470)
..++...++.++..-..|++||-++.+|+-|.... +|||-...+..-
T Consensus 106 ~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~ 156 (330)
T cd07834 106 QYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPD 156 (330)
T ss_pred HHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeeccc
Confidence 33555566666677788999999999999997643 688877776554
No 67
>PRK12396 5-methylribose kinase; Reviewed
Probab=34.29 E-value=3.5e+02 Score=29.57 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=41.2
Q ss_pred cCCCcceeeeeeeecCCCceEEEeeecCCCCCccccC-CCccchhhhHHHHHHHHHhhhc
Q 012140 201 QLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFA-DGLAVLRSSIREFLCSEAMHFL 259 (470)
Q Consensus 201 qLGDGRAilLGEv~~~~G~r~elQLKGaG~TPySR~g-DGRAvLRSsIREyL~SEAMhaL 259 (470)
.+|||-.=.+.-|.+++|. -.+-+|=|. ||-|-+ +-.+.+.-+..|+.+=.+.+.+
T Consensus 36 eigdGnlN~VfrV~~~~~~-~svIVKQAl--p~vRv~~swpL~~~R~~~E~~aL~~~~~~ 92 (409)
T PRK12396 36 EIGDGNLNYVFRVWDEQKN-ISVIVKQAG--DTARISDEFKLSTNRIRIESDVLQLEEEL 92 (409)
T ss_pred EcCCCceEEEEEEeeCCCC-ceEEEEecc--HhhccCCCCCCChHHHHHHHHHHHHHHhh
Confidence 5799988888888765432 267788775 788865 4499999999999666655554
No 68
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=34.22 E-value=50 Score=30.54 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeeccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPF 409 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPf 409 (470)
..++...++-++.-...|++||-++.+|+-|.. .-+|||-.
T Consensus 103 ~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~ 147 (254)
T cd05083 103 LQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLA 147 (254)
T ss_pred HHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccc
Confidence 344555666666777899999999999998864 23687743
No 69
>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=34.12 E-value=54 Score=30.45 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT 403 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T 403 (470)
.++...++-++.+-..|++||=++.+|+-|.-..
T Consensus 110 ~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~ 143 (269)
T cd05044 110 DICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKG 143 (269)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCChheEEEecCC
Confidence 3444556666677789999999999999987655
No 70
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=33.87 E-value=34 Score=34.01 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
+..++...++-++.....|++||-++.+|+.|... -+|||-...+.
T Consensus 170 ~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~ 219 (353)
T PLN00034 170 LADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILA 219 (353)
T ss_pred HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceecc
Confidence 34455666777777788999999999999988643 26888665543
No 71
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=33.87 E-value=51 Score=30.45 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeeccccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFLD 413 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFmD 413 (470)
..++...++-++.....|++||=++.+|+.|.- .-+|+|-...+.
T Consensus 103 ~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~ 151 (255)
T cd08219 103 LQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLT 151 (255)
T ss_pred HHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeec
Confidence 344455666777778899999999999998842 336888655443
No 72
>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio
Probab=33.21 E-value=57 Score=30.51 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccccC
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLDA 414 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD~ 414 (470)
...++...++-++.....|++||-++.+|+-|.... +|||-...++.
T Consensus 102 ~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~ 152 (286)
T cd07847 102 IKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTG 152 (286)
T ss_pred HHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCC
Confidence 445566677777788889999999999999886432 67776655543
No 73
>PF12860 PAS_7: PAS fold
Probab=32.58 E-value=56 Score=27.28 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=42.3
Q ss_pred CCeEEeecHHHHHHCCCCCCCCC-CCChhhhc---cCCCCCCCCch---hhhhh---ccCCCCCCCCcCCCcceeeeeee
Q 012140 144 NPQLVAWSESVADSLELDPKEFE-RPDFPLFF---SGATPLAGAVP---YAQCY---GGHQFGMWAGQLGDGRAITLGEI 213 (470)
Q Consensus 144 ~P~lv~~n~~la~~LGLd~~~~~-~~~~~~~f---sGn~~~~g~~P---~A~~Y---aGHQFG~fagqLGDGRAilLGEv 213 (470)
+=+|+.+|+.+++.++++++.+. ...+.+++ .-...+....+ +++.. ...+--.+-=.+.|||-+.+-..
T Consensus 14 ~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgr~l~~~~~ 93 (115)
T PF12860_consen 14 DGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRRLAERGEFPPGDPEAWVRQRLARLRRRQPRSFELRLPDGRWLEVRAQ 93 (115)
T ss_pred CCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCceeEEECCCCEEEEEEeE
Confidence 34799999999999999976652 23333333 21122221222 22222 12222223335788888888776
Q ss_pred ecCCCc
Q 012140 214 LNLKSE 219 (470)
Q Consensus 214 ~~~~G~ 219 (470)
.-++|.
T Consensus 94 ~~~~Gg 99 (115)
T PF12860_consen 94 PLPDGG 99 (115)
T ss_pred ECCCCC
Confidence 666664
No 74
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=32.18 E-value=1.2e+02 Score=32.64 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=37.5
Q ss_pred cCCCcceeeeeeeecCCCceEEEeeecCCCCCcccc-CCC-ccchhhhHHHHHHHHHhhhc
Q 012140 201 QLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRF-ADG-LAVLRSSIREFLCSEAMHFL 259 (470)
Q Consensus 201 qLGDGRAilLGEv~~~~G~r~elQLKGaG~TPySR~-gDG-RAvLRSsIREyL~SEAMhaL 259 (470)
.||||-.=.+-.|.+.+|. ..+-+|=+. ||.|- |++ ...+.-..+| .|+|..+
T Consensus 33 elggGn~N~VyrV~~~~g~-~svIVKqa~--p~~r~~g~~wpl~~eR~~~E---ae~L~~l 87 (401)
T PRK09550 33 EIGDGNLNLVFRVSDTEGG-KSVIVKQAL--PYVRVVGESWPLTLDRARIE---AEALKIQ 87 (401)
T ss_pred EcCCCceEEEEEEEeCCCC-eEEEEEecC--cccccccccccccHHHHHHH---HHHHHHH
Confidence 6899998888888887764 368899885 99984 564 4566655556 4556554
No 75
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=32.18 E-value=24 Score=34.43 Aligned_cols=29 Identities=41% Similarity=0.765 Sum_probs=25.1
Q ss_pred CccccCCCccchhhhHHHHHHHHHhhhcCCCcc
Q 012140 232 PYSRFADGLAVLRSSIREFLCSEAMHFLGIPTT 264 (470)
Q Consensus 232 PySR~gDGRAvLRSsIREyL~SEAMhaLGIPTT 264 (470)
||||-. +.||+-.||+..||+ .++||||-
T Consensus 161 PFS~LD---~ALR~qfR~wVFs~~-r~agiPtv 189 (213)
T COG4136 161 PFSRLD---VALRDQFRQWVFSEV-RAAGIPTV 189 (213)
T ss_pred chhHHH---HHHHHHHHHHHHHHH-HhcCCCeE
Confidence 888864 789999999999996 67899993
No 76
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=31.29 E-value=65 Score=30.32 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccC
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDA 414 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~ 414 (470)
...++...++-++-+...|++||-++.+|+-|.-. -.|||-...+..
T Consensus 103 ~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~ 153 (277)
T cd06642 103 IATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD 153 (277)
T ss_pred HHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccC
Confidence 34555667777788889999999999999888532 358876655543
No 77
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=31.28 E-value=67 Score=31.00 Aligned_cols=46 Identities=11% Similarity=0.150 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
...++...+.-++.+...|++||-++.+|+-+... -.|+|-+.+++
T Consensus 117 ~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~ 166 (307)
T cd06607 117 IAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVS 166 (307)
T ss_pred HHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecC
Confidence 34556667788888899999999999999988643 36887665543
No 78
>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning
Probab=30.98 E-value=83 Score=29.47 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccCCC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDAFD 416 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~fd 416 (470)
..++.+.++-++.+...|++||-++.+|+-+... -.|||-..++....
T Consensus 103 ~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~ 154 (288)
T cd07833 103 RSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARP 154 (288)
T ss_pred HHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCc
Confidence 4445566777777788999999999999888642 36888777766554
No 79
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=30.97 E-value=44 Score=31.02 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
..++...+.-++.....|++||-++.+|+.|.... .|||-+..+
T Consensus 109 ~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~ 156 (267)
T cd06628 109 RNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKL 156 (267)
T ss_pred HHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCccc
Confidence 34556677777777789999999999999885432 577755444
No 80
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=30.97 E-value=62 Score=36.07 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=49.9
Q ss_pred cCCCCCCCCcCCCcceeeeeeeecC--CCceEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEE
Q 012140 192 GHQFGMWAGQLGDGRAITLGEILNL--KSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 269 (470)
Q Consensus 192 GHQFG~fagqLGDGRAilLGEv~~~--~G~r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALal 269 (470)
|..||.+.|.=.|+.+|++|-..|. +|.++ ||.+-+=..| -+-++|+..||.+.|.+.|
T Consensus 238 gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~----------------DG~~Gv~a~l---~~~~~l~~~~~~~~~~i~v 298 (591)
T PRK13799 238 GNVVGRYKAADDDAKTLITGSHYDTVRNGGKY----------------DGREGIFLAI---ACVKELHEQGERLPFHFEV 298 (591)
T ss_pred CCEEEEcCCCCCCCCeEEEeccccccCCCCcc----------------ccHHHHHHHH---HHHHHHHHcCCCCCCCeEE
Confidence 7778888776668899999988774 44443 8886555544 4677888899999999999
Q ss_pred Ee-cCCeee
Q 012140 270 VT-TGKFVT 277 (470)
Q Consensus 270 v~-tge~V~ 277 (470)
|. ++|.-.
T Consensus 299 i~~~~EEg~ 307 (591)
T PRK13799 299 IAFAEEEGQ 307 (591)
T ss_pred EEecCCCcc
Confidence 85 466654
No 81
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=30.85 E-value=55 Score=31.13 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPF 409 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPf 409 (470)
..++...+..++.-...|++||-++.+|+-|... -+|||-+
T Consensus 113 ~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~ 157 (292)
T cd06644 113 QVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVS 157 (292)
T ss_pred HHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccc
Confidence 3344445556666667899999999999988632 3688854
No 82
>KOG1355 consensus Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=30.55 E-value=54 Score=35.38 Aligned_cols=92 Identities=22% Similarity=0.283 Sum_probs=60.2
Q ss_pred EeccCCeeeecc----chhccccCCCCHHHHHHHHHHHHHhhcCccccccccccccCCCCCCCCcccccchhHHHHHHHH
Q 012140 295 CRVAQSFLRFGS----YQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVE 370 (470)
Q Consensus 295 ~RvA~ShIRfGs----FE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~~~e 370 (470)
+.++.|-||+++ |+-|. +..+.|+... +.-||.++- +-+.-++-|+.
T Consensus 172 sKa~RsGiRv~dL~~D~~~fs-------~r~k~l~~~~-~~~fp~~e~---------------------die~el~~~K~ 222 (455)
T KOG1355|consen 172 SKAARSGLRVCDLVSDFDEFS-------ERFKVLAEQY-KSRFPTLEI---------------------DIEGELARYKG 222 (455)
T ss_pred hhhhhcCcchhHHHhHHHHHH-------HHHHHHHHHH-HHhcCCeEe---------------------cHHHHHHHHHH
Confidence 345677888886 44343 3456666553 445787763 12233455778
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCC-ceeE-----eeeecccccccccCCCC
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDN-MSIL-----GLTIDYGPFGFLDAFDP 417 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDN-mSI~-----G~TIDYGPfaFmD~fdP 417 (470)
.++|..-+|-. .|.|+|--++.-. +.+- =+-||||.|-|+-.-++
T Consensus 223 ~aekl~p~V~D--~V~F~~eal~~~KkiLVEGanaamLDiDFGTYPfVTSSn~ 273 (455)
T KOG1355|consen 223 YAEKLKPMVRD--TVYFMYEALHGKKKILVEGANAAMLDIDFGTYPFVTSSNC 273 (455)
T ss_pred HHHhhcchhhc--hhhhhhhhhhcCceEEEecccceeeecccCcccccccCCC
Confidence 88888888876 7999999888762 2222 26799999999875544
No 83
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=30.05 E-value=60 Score=31.05 Aligned_cols=44 Identities=23% Similarity=0.161 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGF 411 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaF 411 (470)
...++...++-++..-..|++||-++.+|+-|... -+|||=...
T Consensus 131 ~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~ 178 (295)
T cd05097 131 LLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRN 178 (295)
T ss_pred HHHHHHHHHHHHHHHHhcCeeccccChhhEEEcCCCcEEecccccccc
Confidence 34456667777777788999999999999998643 268775543
No 84
>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti
Probab=29.83 E-value=68 Score=29.56 Aligned_cols=42 Identities=12% Similarity=0.065 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEe----eeecccccccc
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFL 412 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFm 412 (470)
++...++-++.....|++||-++.+|+-|.. .-+|||-.--+
T Consensus 106 ~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~ 151 (256)
T cd08218 106 WFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVL 151 (256)
T ss_pred HHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeec
Confidence 3455677777788899999999999999863 34677755433
No 85
>PRK02561 psbF cytochrome b559 subunit beta; Provisional
Probab=29.76 E-value=22 Score=27.37 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=11.1
Q ss_pred HhhhcCCCccceeEE
Q 012140 255 AMHFLGIPTTRALCL 269 (470)
Q Consensus 255 AMhaLGIPTTRALal 269 (470)
|.|+|||||-==|.-
T Consensus 21 AvhalavPtVfFlGa 35 (44)
T PRK02561 21 AVHALGVPTVFFLGA 35 (44)
T ss_pred hhhccccCceeeccH
Confidence 789999999644443
No 86
>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.
Probab=29.46 E-value=50 Score=30.28 Aligned_cols=42 Identities=10% Similarity=-0.014 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEee-----eeccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL-----TIDYGPFGF 411 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~-----TIDYGPfaF 411 (470)
.++...++-++.....|++||-++.+|+-|... -.|||-...
T Consensus 105 ~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~ 151 (257)
T cd08225 105 SWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQ 151 (257)
T ss_pred HHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchh
Confidence 334445666777789999999999999998643 257764443
No 87
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=29.38 E-value=54 Score=31.61 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
...++...++-++..-..|++|+=++.+|+-|.... +|||-...+
T Consensus 142 ~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~ 190 (307)
T cd05098 142 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 190 (307)
T ss_pred HHHHHHHHHHHHHHHHHCCcccccccHHheEEcCCCcEEECCCcccccc
Confidence 344555666777777789999999999999886533 688865444
No 88
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=29.26 E-value=75 Score=29.35 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEe----eeecccccccc
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFL 412 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFm 412 (470)
++...+.-++.....|++||-+|.+|+-|.. ..+|||-.-.+
T Consensus 108 ~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~ 153 (261)
T cd05034 108 MAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLI 153 (261)
T ss_pred HHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceec
Confidence 3444555566667889999999999998853 23577754433
No 89
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=28.74 E-value=66 Score=30.49 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEee
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL 402 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~ 402 (470)
.++...+.-++.+-..|++||-++.+|+-|...
T Consensus 113 ~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~ 145 (284)
T cd05079 113 KYAVQICKGMDYLGSRQYVHRDLAARNVLVESE 145 (284)
T ss_pred HHHHHHHHHHHHHHHCCeeecccchheEEEcCC
Confidence 455566677777889999999999999998653
No 90
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=28.72 E-value=1.1e+02 Score=29.18 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
..++...|+-++..-..|++|+=++.+|+-|.... +|||-..++
T Consensus 112 ~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~ 159 (279)
T cd05111 112 LNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLL 159 (279)
T ss_pred HHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceec
Confidence 34455566677777789999999999999997543 688866554
No 91
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=28.51 E-value=72 Score=29.82 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccC
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDA 414 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~ 414 (470)
++...+.-++..-..|++|+=++.+|+.|... -+|||-+-++..
T Consensus 111 i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~ 158 (267)
T cd05066 111 MLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLED 158 (267)
T ss_pred HHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCccccccc
Confidence 44445566666678999999999999988542 469998877653
No 92
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=28.48 E-value=60 Score=30.76 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYG 407 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYG 407 (470)
.++...++-++..-..|++||-++.+|+-|.... +|||
T Consensus 134 ~~~~~i~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg 175 (288)
T cd05050 134 CIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFG 175 (288)
T ss_pred HHHHHHHHHHHHHHhCCeecccccHhheEecCCCceEECccc
Confidence 3444455555555577999999999999886533 6776
No 93
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=28.44 E-value=1.5e+02 Score=27.16 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeE----eeeecccccccccCCCCCCccCCCCCCC-Ccc--------ccCC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSIL----GLTIDYGPFGFLDAFDPSFTPNTTDLPG-RRY--------CFAN 435 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~----G~TIDYGPfaFmD~fdP~~v~n~~D~~G-~RY--------af~n 435 (470)
..++...++.++.=...|++|+-++.+|+-|. ..-+|||-+-++......... ..| ..| ....
T Consensus 101 ~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~----~~~~~~y~aPE~~~~~~~~ 176 (260)
T PF00069_consen 101 LKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNP----FVGTPEYMAPEVLQQGKKY 176 (260)
T ss_dssp HHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSS----SSSSGGGSCHHHHTTTSSB
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccc
Confidence 34444445555555667999999999999998 344799988765222221111 111 012 1234
Q ss_pred chHHHHHHHHHHHHhh
Q 012140 436 QPDIGLWNIAQFSTTL 451 (470)
Q Consensus 436 QP~i~~WNL~rLaeaL 451 (470)
.+..-.|.|..+.-.+
T Consensus 177 ~~~~Di~slG~il~~l 192 (260)
T PF00069_consen 177 TRKSDIWSLGIILYEL 192 (260)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred cccccccccccccccc
Confidence 4555668888776555
No 94
>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast
Probab=28.44 E-value=74 Score=28.93 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeecccccccccCCC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFLDAFD 416 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFmD~fd 416 (470)
..++...+.-++..-..|++||-++.+|+-|.. .-.|||-+.+.+.-+
T Consensus 102 ~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~ 153 (254)
T cd06627 102 AVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVS 153 (254)
T ss_pred HHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCc
Confidence 344455555556666889999999999998875 347888777665443
No 95
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=28.38 E-value=72 Score=30.07 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 372 AERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 372 v~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
+...++-++.....|++|+-++.+|+-+.... +|||=.-.+
T Consensus 115 ~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~ 159 (279)
T cd05109 115 CVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLL 159 (279)
T ss_pred HHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeec
Confidence 34455556666788999999999999885422 477643333
No 96
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=28.30 E-value=69 Score=30.15 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFG 410 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfa 410 (470)
+..++...|+-++.--..|++||=++.+|+-|.... +|||-..
T Consensus 121 ~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~ 167 (277)
T cd05062 121 MIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 167 (277)
T ss_pred HHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEECCCCCcc
Confidence 344555566667777788999999999999997543 5777543
No 97
>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as
Probab=28.22 E-value=62 Score=31.05 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEee--------eeccccccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL--------TIDYGPFGFLD 413 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~--------TIDYGPfaFmD 413 (470)
....++...++-++..-..|++|+=+..+|+-|.+. -+|||-+.++.
T Consensus 109 ~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~ 163 (317)
T cd07867 109 MVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN 163 (317)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccC
Confidence 445666677777788888999999999999998543 36888766553
No 98
>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi
Probab=28.12 E-value=64 Score=29.44 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHH-----HhhcccccccCCCceeEee----eecccccccccC
Q 012140 370 EVAERTASLVAQWQ-----GVGFTHGVLNTDNMSILGL----TIDYGPFGFLDA 414 (470)
Q Consensus 370 eVv~RtA~LVA~Wq-----~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~ 414 (470)
.++...++.++... ..|++||-++.+|+.|... -+|+|-...++.
T Consensus 109 ~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~ 162 (265)
T cd08217 109 RILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGH 162 (265)
T ss_pred HHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccC
Confidence 34444555555555 8999999999999999752 257765555443
No 99
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=28.01 E-value=91 Score=28.68 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHH-hhcccccccCCCceeEee---eeccccccccc
Q 012140 371 VAERTASLVAQWQG-VGFTHGVLNTDNMSILGL---TIDYGPFGFLD 413 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~-vGF~HGVmNTDNmSI~G~---TIDYGPfaFmD 413 (470)
++...+..++..-. -|++|+=++-.|+-|... -||||=...++
T Consensus 122 i~~~l~~~l~~lH~~~givHrDlkP~NIll~~~~~~liDFG~a~~~~ 168 (190)
T cd05145 122 LYEQVVEQMRRLYQEAGLVHGDLSEYNILYHDGKPYIIDVSQAVELD 168 (190)
T ss_pred HHHHHHHHHHHHHHhCCEecCCCChhhEEEECCCEEEEEcccceecC
Confidence 33334444444444 799999999999999621 35777655554
No 100
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=27.99 E-value=1.2e+02 Score=29.64 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCceeEeeeecccccccccCCCCCCccCCCCCCCCccccCCchHHHHHHHHHHHHhh
Q 012140 372 AERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTL 451 (470)
Q Consensus 372 v~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP~~v~n~~D~~G~RYaf~nQP~i~~WNL~rLaeaL 451 (470)
+.+.+..++.--..|++|+=++.+|+-|... |..-+ +|- | +-.+..-++-..=||.||..+|
T Consensus 148 ~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~----~~v~L------------IDf-g-~~~~~~~~~~~~~nl~rl~rs~ 209 (239)
T PRK01723 148 WQAIGQLIARFHDAGVYHADLNAHNILLDPD----GKFWL------------IDF-D-RGELRTPTRWKQANLARLLRSF 209 (239)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCchhEEEcCC----CCEEE------------EEC-C-CcccCCCHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999988531 11111 221 1 1111222566778999999998
Q ss_pred ccC----CC--CCHHHHHHHhhhc
Q 012140 452 AAA----KL--IDDKEANYVMERF 469 (470)
Q Consensus 452 ~p~----pl--i~~~~~~~~L~~y 469 (470)
.-. +. ..+...++.|+.|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~y 233 (239)
T PRK01723 210 NKEQGKRPILAFSEQDWQALLAGY 233 (239)
T ss_pred HHHhccCCcccccHHHHHHHHHHH
Confidence 531 11 1233366777766
No 101
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=27.98 E-value=73 Score=30.58 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
...++...++-++..-..|++|+=++.+|+-|... -+|||-.-.+.
T Consensus 139 ~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~ 188 (304)
T cd05101 139 LVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVN 188 (304)
T ss_pred HHHHHHHHHHHHHHHHHCCeeecccccceEEEcCCCcEEECCCccceecc
Confidence 45566677888888889999999999999999752 36888665553
No 102
>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)
Probab=27.56 E-value=55 Score=30.67 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccCC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDAF 415 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~f 415 (470)
..++...+..++.....|++||=++.+|+-|... -+|||-..+++..
T Consensus 101 ~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~ 151 (274)
T cd06609 101 AFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTST 151 (274)
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeeccc
Confidence 4444555556666667899999999999988743 3688887777654
No 103
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=27.54 E-value=72 Score=29.57 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
.++.+.++-++..-..|++|+=++.+|+.|.... .|+|-..++.
T Consensus 110 ~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~ 157 (267)
T cd08229 110 KYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 157 (267)
T ss_pred HHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccc
Confidence 4445555666666788999999999999986533 6888655543
No 104
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=27.47 E-value=79 Score=29.54 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGF 411 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaF 411 (470)
...++...+.-++.+...|++||=++.+|+-|.... +|||=.-+
T Consensus 109 ~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~ 156 (270)
T cd05056 109 LILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRY 156 (270)
T ss_pred HHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeee
Confidence 344566677777788889999999999999886532 56664433
No 105
>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down
Probab=27.46 E-value=72 Score=30.94 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHH-hhcccccccCCCceeEee----eecccccccc
Q 012140 368 AVEVAERTASLVAQWQG-VGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~-vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
...++...++-++.+-. .|++|+-++.+|+-|... -+|||-...+
T Consensus 101 ~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~ 150 (308)
T cd06615 101 LGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 150 (308)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCcccc
Confidence 44555556666666665 599999999999988653 3788876655
No 106
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=27.35 E-value=69 Score=31.22 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFG 410 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfa 410 (470)
.++...+.-++..-..|++||-++.+|+-|... -+|||-+.
T Consensus 125 ~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~ 169 (313)
T cd06633 125 AITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSAS 169 (313)
T ss_pred HHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCc
Confidence 355566677777778899999999999988653 37887544
No 107
>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is
Probab=27.20 E-value=73 Score=30.24 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFm 412 (470)
..++...++-++..-..|++||-++.+|+-|.. .-+|||-.-.+
T Consensus 105 ~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~ 152 (298)
T cd07841 105 KSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSF 152 (298)
T ss_pred HHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeec
Confidence 445666777788888899999999999998764 23466655443
No 108
>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase. Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=26.57 E-value=86 Score=29.58 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeeccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGF 411 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaF 411 (470)
..++...++-++..-..|++||=++.+|+-|.- .-+|||-...
T Consensus 106 ~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~ 152 (282)
T cd06643 106 RVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAK 152 (282)
T ss_pred HHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcccccccc
Confidence 334445666667777889999999999997742 2367775433
No 109
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=26.40 E-value=73 Score=29.63 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
..++...++-++.--..|++|+=++.+|+-|.-. -+|||=...+.
T Consensus 115 ~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 163 (272)
T cd05075 115 VKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIY 163 (272)
T ss_pred HHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcccccC
Confidence 3444445555566667899999999999987532 26888666553
No 110
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=26.39 E-value=62 Score=30.69 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccCCC
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDAFD 416 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~fd 416 (470)
...++...+.-++.....|++||-+..+|+.|... -.|||-+.+++.-+
T Consensus 118 ~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~ 170 (302)
T cd07864 118 IKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEE 170 (302)
T ss_pred HHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCcccccccccCCc
Confidence 44566667777778888999999999999887754 36888777765433
No 111
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=26.32 E-value=77 Score=29.91 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLD 413 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD 413 (470)
.++...++-++.....|++||-++.+|+-|.-.. +|||-...+.
T Consensus 105 ~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~ 152 (277)
T cd06640 105 TMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLT 152 (277)
T ss_pred HHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceecc
Confidence 3445566667777789999999999999987432 6777554443
No 112
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=26.09 E-value=93 Score=27.73 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHH-hhcccccccCCCceeEe---eeecccccc
Q 012140 370 EVAERTASLVAQWQG-VGFTHGVLNTDNMSILG---LTIDYGPFG 410 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~-vGF~HGVmNTDNmSI~G---~TIDYGPfa 410 (470)
.++...+..+..... .|++||=++.+|+-|.. ..||||-..
T Consensus 118 ~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~~~~~~liDfg~a~ 162 (187)
T cd05119 118 ELYDQILELMRKLYREAGLVHGDLSEYNILVDDGKVYIIDVPQAV 162 (187)
T ss_pred HHHHHHHHHHHHHhhccCcCcCCCChhhEEEECCcEEEEECcccc
Confidence 334445555556666 89999999999998861 235555443
No 113
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=26.02 E-value=70 Score=29.71 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeeccccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFLD 413 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFmD 413 (470)
..++.+.+.-++.-...|++||-++.+|+-|.- .-+|||-....+
T Consensus 105 ~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~ 153 (260)
T cd05067 105 IDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIE 153 (260)
T ss_pred HHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecC
Confidence 444555566666667899999999999998753 225888766554
No 114
>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=26.01 E-value=83 Score=29.56 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPF 409 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPf 409 (470)
..++...+.-++.+-..|++||=++.+|+-|... -+|+|-.
T Consensus 115 ~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~ 159 (270)
T cd05047 115 LHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLS 159 (270)
T ss_pred HHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCc
Confidence 3445556666677778999999999999998653 3677743
No 115
>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=25.83 E-value=87 Score=29.03 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGP 408 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGP 408 (470)
...++.+.+.-++.-...|++||=++.+|+-|.... .|||=
T Consensus 97 ~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~ 141 (257)
T cd05060 97 LKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGM 141 (257)
T ss_pred HHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccc
Confidence 344555566666666788999999999998886433 56653
No 116
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=25.74 E-value=70 Score=29.75 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
.++...++-+...-..|++||=++.+|+-|.... +|||=+..+
T Consensus 110 ~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~ 156 (267)
T cd06646 110 YVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKI 156 (267)
T ss_pred HHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceee
Confidence 3444555666666788999999999999886432 688865544
No 117
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=25.73 E-value=96 Score=29.65 Aligned_cols=45 Identities=24% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeecccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFm 412 (470)
...++...+.-++.--..|++||-++.+|+-|.. .-+|||-...+
T Consensus 132 ~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~ 180 (296)
T cd05095 132 LIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNL 180 (296)
T ss_pred HHHHHHHHHHHHHHHHHCCeecccCChheEEEcCCCCEEeccCcccccc
Confidence 3445555666666677889999999999998864 34788865444
No 118
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=25.69 E-value=85 Score=29.32 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
..++...+..++..-..|++|+=++.+|+-|... -+|||-...+
T Consensus 103 ~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~ 150 (256)
T cd05113 103 LEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYV 150 (256)
T ss_pred HHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceec
Confidence 4455566677777778899999999999998753 3688865543
No 119
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=25.67 E-value=1.1e+02 Score=29.29 Aligned_cols=45 Identities=27% Similarity=0.191 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
..++...|+-++.--..|++|+-++.+|+-|... -.|||-...+.
T Consensus 141 ~~i~~~i~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~ 189 (304)
T cd05096 141 LHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLY 189 (304)
T ss_pred HHHHHHHHHHHHHHHHCCccccCcchhheEEcCCccEEECCCccceecc
Confidence 4455556666666778899999999999988753 36888766553
No 120
>PF09998 DUF2239: Uncharacterized protein conserved in bacteria (DUF2239); InterPro: IPR018715 This family of uncharacterised bacterial proteins has no known function.
Probab=25.31 E-value=4e+02 Score=26.41 Aligned_cols=143 Identities=19% Similarity=0.186 Sum_probs=79.1
Q ss_pred CCCcceeeeeeeecCCCceEEEeeecCCCCCccccCCCccchhhhHHHHHHHHHhhhcCCCccceeEEEecCCeeeeccc
Q 012140 202 LGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMF 281 (470)
Q Consensus 202 LGDGRAilLGEv~~~~G~r~elQLKGaG~TPySR~gDGRAvLRSsIREyL~SEAMhaLGIPTTRALalv~tge~V~R~~~ 281 (470)
-|++-.|++.+ |.+|+..||-|.|+-. |.+..|.-|.+-+-.-- ....--|..
T Consensus 30 ~~~~~~vLvFd--d~TGr~vD~DlrG~~~-----------------------ev~~R~~~~~~~~~~~~-~~~~~prgr- 82 (187)
T PF09998_consen 30 AGPAAPVLVFD--DATGRQVDLDLRGSDA-----------------------EVLARLAPAAPPAAAAE-AEAAAPRGR- 82 (187)
T ss_pred cCCCCceEEEE--CCCCCEEeeeCCCCHH-----------------------HHHHhhccCCccccccc-ccCCCCCCC-
Confidence 35677888876 7789999999998733 33333332221111000 111111211
Q ss_pred cCCCCCCCCceeEEeccCCeeeeccchhccccCCCCHHHHHHHHHHHHHhhcCccccccccc--cccCCCCC-CCCcccc
Q 012140 282 YDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSE--SLSFSTGD-EDHSVVD 358 (470)
Q Consensus 282 y~g~~~~EpgAVv~RvA~ShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~~--~~~~~~~~-~~~~~~~ 358 (470)
|. -+=.||.|-- -+=.=|.|+.+..-.+-.-.||+|+|-..+.+=..=.. .... -+.|.... .|-|
T Consensus 83 --GR---PKLGVVaREV--TLLPRHWdWLa~QpGGASvaLRkLVd~Arr~~~~~dr~-R~aqeaayrFMsamAGdlP--- 151 (187)
T PF09998_consen 83 --GR---PKLGVVAREV--TLLPRHWDWLAAQPGGASVALRKLVDEARRAHAGRDRR-RAAQEAAYRFMSAMAGDLP--- 151 (187)
T ss_pred --CC---Ccccccccee--eccchhHHHHhcCCCchhHHHHHHHHHHHhcCCcccHH-HHHHHHHHHHHHHHccCCC---
Confidence 22 2335666655 44456899988764467789999999988876322100 0000 01121111 1111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 012140 359 LTSNKYAAWAVEVAERTASLVAQW 382 (470)
Q Consensus 359 ~~~~~y~a~~~eVv~RtA~LVA~W 382 (470)
.-++...+||..=..+.+.+|+.|
T Consensus 152 gfEEA~RALfA~D~~~f~~~i~~W 175 (187)
T PF09998_consen 152 GFEEASRALFAGDRARFAALIAAW 175 (187)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhhC
Confidence 145566778888888999999999
No 121
>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa
Probab=25.29 E-value=92 Score=28.66 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
...++...++-++.....|++||=++-+|+.|.... .|||.+-.+
T Consensus 103 ~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~ 151 (256)
T cd08221 103 VLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKIL 151 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEc
Confidence 455666777788888899999999999999886554 577765544
No 122
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=24.98 E-value=74 Score=31.22 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
.++...|.-++..-..|++|+-++.+|+-|.... +|||-...+
T Consensus 111 ~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~ 157 (337)
T cd07852 111 YIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSL 157 (337)
T ss_pred HHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhcc
Confidence 3556667777788889999999999999886543 677754433
No 123
>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the
Probab=24.84 E-value=83 Score=29.98 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEe--------eeeccccccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG--------LTIDYGPFGFLD 413 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G--------~TIDYGPfaFmD 413 (470)
....++...++.++..-..|++|+-++.+|+-|.. .-+|||-..+++
T Consensus 109 ~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~ 163 (316)
T cd07842 109 MVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFN 163 (316)
T ss_pred HHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccC
Confidence 44566667777888888999999999999998865 236888655553
No 124
>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI
Probab=24.82 E-value=77 Score=29.73 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeecccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFG 410 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfa 410 (470)
...++...++.++..-..|++||-++.+|+-|.- .-+|+|=+.
T Consensus 102 ~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~ 148 (286)
T cd07846 102 VRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFAR 148 (286)
T ss_pred HHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeee
Confidence 4555666677777778899999999999988853 224666433
No 125
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=24.80 E-value=63 Score=31.21 Aligned_cols=41 Identities=17% Similarity=0.044 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFG 410 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfa 410 (470)
.++...++-++.....|++||-++.+|+-|... -+|||-..
T Consensus 108 ~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~ 152 (309)
T cd07872 108 IFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLAR 152 (309)
T ss_pred HHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccce
Confidence 344556666677778999999999999988653 36888543
No 126
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=24.78 E-value=82 Score=29.44 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHH-HHHhhcccccccCCCceeEe---eeeccc
Q 012140 369 VEVAERTASLVAQ-WQGVGFTHGVLNTDNMSILG---LTIDYG 407 (470)
Q Consensus 369 ~eVv~RtA~LVA~-Wq~vGF~HGVmNTDNmSI~G---~TIDYG 407 (470)
..++...+..++. |...|++||=+..+|+-|.. --||||
T Consensus 120 ~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~~~~v~LiDFG 162 (190)
T cd05147 120 RELYLQVIQIMRILYQDCRLVHADLSEYNLLYHDGKLYIIDVS 162 (190)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEECCcEEEEEcc
Confidence 3444444455554 56789999999999999963 225555
No 127
>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re
Probab=24.66 E-value=65 Score=30.01 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccc
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
++...+.-++..-..|++||=++++|+-|.-. -+|||=...+
T Consensus 111 ~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~ 156 (265)
T cd06652 111 YTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRL 156 (265)
T ss_pred HHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCcccccc
Confidence 34445666677778999999999999987532 2688854443
No 128
>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily.
Probab=24.61 E-value=1.1e+02 Score=27.03 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccC
Q 012140 364 YAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDA 414 (470)
Q Consensus 364 y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~ 414 (470)
...++.++++-.+ .=...|++||-++.+|+-|... -+|||-.-.+..
T Consensus 89 ~~~~~~~l~~~l~----~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~ 139 (244)
T smart00220 89 ARFYARQILSALE----YLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDP 139 (244)
T ss_pred HHHHHHHHHHHHH----HHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecc
Confidence 4445555554444 4455699999999999998753 367766555544
No 129
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=24.47 E-value=96 Score=28.95 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEee-----eeccccccccc
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGL-----TIDYGPFGFLD 413 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~-----TIDYGPfaFmD 413 (470)
++...++-++.--..|++||-++.+|+-|... -.|||.+..+.
T Consensus 113 ~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~ 160 (268)
T cd06624 113 YTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLA 160 (268)
T ss_pred HHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecc
Confidence 33445555555567899999999999988532 27888776554
No 130
>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan
Probab=24.46 E-value=1.3e+02 Score=27.35 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeecccccccccCCC
Q 012140 362 NKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFLDAFD 416 (470)
Q Consensus 362 ~~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFmD~fd 416 (470)
.....++.++++-.+.+ -..|++||-++.+|+-|.. .-.|+|-+-.+...+
T Consensus 105 ~~~~~~~~~l~~al~~l----H~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~ 159 (262)
T cd00192 105 KDLLSFAIQIAKGMEYL----ASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDD 159 (262)
T ss_pred HHHHHHHHHHHHHHHHH----HcCCcccCccCcceEEECCCCcEEEccccccccccccc
Confidence 34455666665555444 4589999999999999877 446777776666543
No 131
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
Probab=24.30 E-value=57 Score=34.06 Aligned_cols=51 Identities=24% Similarity=0.165 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---cccccccCCCceeEeeeecccccccccCCCC
Q 012140 364 YAAWAVEVAERTASLVAQWQGVG---FTHGVLNTDNMSILGLTIDYGPFGFLDAFDP 417 (470)
Q Consensus 364 y~a~~~eVv~RtA~LVA~Wq~vG---F~HGVmNTDNmSI~G~TIDYGPfaFmD~fdP 417 (470)
-.+-+..+++++.+.+..=+.-+ -|||=+|-||+-+.+.+- ..||+|-+|-
T Consensus 173 l~a~~~~~~~~~~~~~~~~lp~~~~~iIH~D~~~~NVl~d~~~~---~~g~iDFdDa 226 (331)
T COG2334 173 LRAALLAALDRLLARLPAHLPALGDQIIHGDLHPDNVLFDDDTD---VSGFIDFDDA 226 (331)
T ss_pred hHHHHHHHHHHHHhhchhhCCcccceeeecCCCccceeEcCCCC---eeeEEEcccc
Confidence 45556667777666665555555 899999999999998875 5777776553
No 132
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=24.29 E-value=92 Score=29.48 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 372 AERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 372 v~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
+...|.-++.=-..|++||-++.+|+-|.... +|||=.-++
T Consensus 138 ~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~ 182 (293)
T cd05053 138 AYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDI 182 (293)
T ss_pred HHHHHHHHHHHHHCCccccccceeeEEEcCCCeEEeCcccccccc
Confidence 33344444444478999999999999886543 577755444
No 133
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=24.15 E-value=83 Score=29.39 Aligned_cols=43 Identities=23% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPF 409 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPf 409 (470)
.+..++...++-++.--..|++|+-++.+|+-|.... +|||-.
T Consensus 101 ~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~ 147 (269)
T cd05042 101 VLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLA 147 (269)
T ss_pred HHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccc
Confidence 3445555566667777788999999999999886642 688754
No 134
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=24.01 E-value=82 Score=30.12 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHH-hhcccccccCCCceeEee----eecccccccc
Q 012140 369 VEVAERTASLVAQWQG-VGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~-vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
..++...++-++.... -|++||-++.+|+-+... -+|||-...+
T Consensus 117 ~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~ 165 (296)
T cd06618 117 GKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRL 165 (296)
T ss_pred HHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhc
Confidence 3456666777776665 599999999999988542 2688766554
No 135
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=23.96 E-value=69 Score=30.63 Aligned_cols=44 Identities=11% Similarity=-0.023 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
..++...++-+...-..|++|+-++.+|+-|...+ +|||-...+
T Consensus 105 ~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~ 152 (285)
T cd05632 105 LFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKI 152 (285)
T ss_pred HHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceec
Confidence 34444555666666788999999999999886432 688854333
No 136
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=23.93 E-value=66 Score=31.89 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
..++...++-++.....|++||-++.+|+.+..- -+|||-.-.+
T Consensus 121 ~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~ 168 (343)
T cd07851 121 QFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHT 168 (343)
T ss_pred HHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccc
Confidence 3455667777778888999999999999888642 2676655443
No 137
>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85. Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.
Probab=23.88 E-value=69 Score=30.00 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
..++...++-++.....|++||-++.+|+-+... -.|+|-+.+++
T Consensus 103 ~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~ 151 (284)
T cd07836 103 KSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFG 151 (284)
T ss_pred HHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhc
Confidence 3445555666667778899999999999988643 37888776654
No 138
>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex
Probab=23.64 E-value=98 Score=29.08 Aligned_cols=46 Identities=15% Similarity=0.019 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
...++...++-++.....|++||-++.+|+.|..- -.|||-+..++
T Consensus 102 ~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~ 151 (284)
T cd07860 102 IKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFG 151 (284)
T ss_pred HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcc
Confidence 44555566677777788999999999999888542 26777655443
No 139
>PF03077 VacA2: Putative vacuolating cytotoxin; InterPro: IPR004311 Proteins containing this domain include a number of Helicobacter pylori outer membrane proteins with multiple copies of this small conserved region.
Probab=23.61 E-value=31 Score=28.26 Aligned_cols=19 Identities=37% Similarity=0.711 Sum_probs=16.9
Q ss_pred HHhhcccccccCCCceeEe
Q 012140 383 QGVGFTHGVLNTDNMSILG 401 (470)
Q Consensus 383 q~vGF~HGVmNTDNmSI~G 401 (470)
+++||++|++|..|+-|.|
T Consensus 1 g~~GyItg~f~A~~IyiT~ 19 (60)
T PF03077_consen 1 GDVGYITGTFNAKNIYITG 19 (60)
T ss_pred CcccEEeeEeccceEEEec
Confidence 4689999999999998876
No 140
>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their
Probab=23.32 E-value=79 Score=29.25 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEee--e---ecccccccccC
Q 012140 363 KYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL--T---IDYGPFGFLDA 414 (470)
Q Consensus 363 ~y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~--T---IDYGPfaFmD~ 414 (470)
....++..+++-.+.+ ...|++|+-++.+|+-+... . +|||-..++..
T Consensus 104 ~~~~~~~ql~~al~~L----H~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~ 156 (268)
T cd06630 104 VIINYTEQLLRGLSYL----HENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAA 156 (268)
T ss_pred HHHHHHHHHHHHHHHH----HhCCeecCCCCHHHEEEcCCCCEEEEccccccccccc
Confidence 3445556655554444 56799999999999998543 2 68888777653
No 141
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=23.16 E-value=1e+02 Score=28.33 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccc
Q 012140 366 AWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFG 410 (470)
Q Consensus 366 a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfa 410 (470)
.+..++++.. +.=-..|++||-++++|+-|..- -+|||-..
T Consensus 104 ~~~~~l~~~l----~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~ 148 (256)
T cd05112 104 GMCLDVCEGM----AYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTR 148 (256)
T ss_pred HHHHHHHHHH----HHHHHCCccccccccceEEEcCCCeEEECCCccee
Confidence 3444444444 33346799999999999999642 36777443
No 142
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=23.11 E-value=1e+02 Score=30.33 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
...++...++-++..-..|++|+=++.+|+-|.... +|||=...+
T Consensus 136 ~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~ 184 (334)
T cd05100 136 LVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDV 184 (334)
T ss_pred HHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCcccceec
Confidence 344555677777778889999999999999997543 577754444
No 143
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=23.00 E-value=91 Score=28.90 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCceeEe----eeeccccccccc
Q 012140 372 AERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFLD 413 (470)
Q Consensus 372 v~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFmD 413 (470)
+...++-++.-...|++||=++.+|+-|.- .-+|||-..++.
T Consensus 112 ~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~ 157 (267)
T cd08228 112 FVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 157 (267)
T ss_pred HHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceecc
Confidence 334444555556789999999999999853 236888665554
No 144
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=23.00 E-value=85 Score=29.16 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
.++...++.++....-|++||-++.+|+-|.-. -+|||-..++
T Consensus 106 ~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~ 152 (265)
T cd06631 106 KYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRL 152 (265)
T ss_pred HHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhh
Confidence 334455566666778899999999999998532 2677766554
No 145
>PLN00009 cyclin-dependent kinase A; Provisional
Probab=22.94 E-value=1.3e+02 Score=28.59 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCceeE--e---eeecccccccc
Q 012140 367 WAVEVAERTASLVAQWQGVGFTHGVLNTDNMSIL--G---LTIDYGPFGFL 412 (470)
Q Consensus 367 ~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~--G---~TIDYGPfaFm 412 (470)
.+..++...+.-++..-.-|++||-++.+|+-|. | .-.|||-+..+
T Consensus 103 ~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~ 153 (294)
T PLN00009 103 LIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAF 153 (294)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEccccccccc
Confidence 3444555566666677788999999999999996 3 23588866544
No 146
>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates
Probab=22.84 E-value=77 Score=29.95 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHH-hhcccccccCCCceeEeee----ecccccccc
Q 012140 368 AVEVAERTASLVAQWQG-VGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~-vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
...++...++-++..-. .|++||=++.+|+-+.-.. +|||-..++
T Consensus 109 ~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~ 158 (288)
T cd06616 109 LGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQL 158 (288)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHh
Confidence 34555556666666644 6999999999999875332 688866544
No 147
>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK
Probab=22.78 E-value=81 Score=28.39 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDA 414 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~ 414 (470)
..++...++.++.....|++||-++.+|+-|... -+|||-......
T Consensus 104 ~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~ 153 (260)
T cd06606 104 RKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGD 153 (260)
T ss_pred HHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEeccc
Confidence 3455566667777788999999999999999852 246655444443
No 148
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=22.68 E-value=82 Score=29.85 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeeccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPF 409 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPf 409 (470)
...++...+..++..-..|++||-++.+|+-+.- .-+|||=.
T Consensus 97 ~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~ 142 (279)
T cd06619 97 LGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVS 142 (279)
T ss_pred HHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcc
Confidence 4467777888888899999999999999998742 23567643
No 149
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=22.60 E-value=1e+02 Score=29.13 Aligned_cols=45 Identities=20% Similarity=0.081 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
+..++...++-++.+-.-|++||=++.+|+-|..-. .|||=...+
T Consensus 126 ~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~ 174 (283)
T cd05090 126 FLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREI 174 (283)
T ss_pred HHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCcEEeccccccccc
Confidence 344566677788888899999999999999886433 577755443
No 150
>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=22.58 E-value=2e+02 Score=27.18 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
..++...|+-++..-..|++||-++.+|+-|..- -+|||-....
T Consensus 108 ~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~ 155 (290)
T cd05613 108 QIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEF 155 (290)
T ss_pred HHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceec
Confidence 3334445666666677899999999999888532 3677755443
No 151
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=22.26 E-value=1.1e+02 Score=28.21 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
++...++-++.--..|++||=++.+|+-|.... +|||=..-+
T Consensus 99 ~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~ 144 (252)
T cd05084 99 MVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREE 144 (252)
T ss_pred HHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCccc
Confidence 344455555555678999999999999887543 788765443
No 152
>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt
Probab=22.11 E-value=1.7e+02 Score=27.86 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEe
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILG 401 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G 401 (470)
..++...|+-++..-..|++||-++.+|+-|..
T Consensus 120 ~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~ 152 (274)
T cd05076 120 ITVAQQLASALSYLEDKNLVHGNVCAKNILLAR 152 (274)
T ss_pred HHHHHHHHHHHHHHHcCCccCCCCCcccEEEec
Confidence 345566667777777899999999999999863
No 153
>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.
Probab=22.05 E-value=1.3e+02 Score=28.06 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee---eecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL---TIDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~---TIDYGPfaFm 412 (470)
..++...+.-++.....|++||-++.+|+-+..- -.|||-+..+
T Consensus 103 ~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~~~~kl~dfg~~~~~ 149 (282)
T cd07831 103 KSYMYQLLKSLDHMHRNGIFHRDIKPENILIKDDILKLADFGSCRGI 149 (282)
T ss_pred HHHHHHHHHHHHHHHHCCceecccCHHHEEEcCCCeEEEeccccccc
Confidence 3344455566666678899999999999988762 2466655443
No 154
>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity. Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....
Probab=22.04 E-value=1.5e+02 Score=27.94 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeE-eeeecccccccccCC
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSIL-GLTIDYGPFGFLDAF 415 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~-G~TIDYGPfaFmD~f 415 (470)
..++...|+-++.=...+++||-++++|+.+. ...+=.+.||+....
T Consensus 106 ~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~ 153 (259)
T PF07714_consen 106 LSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPI 153 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34444555555555678999999999999998 445555666665544
No 155
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=21.77 E-value=76 Score=31.10 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPF 409 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPf 409 (470)
+.++...++-++.+-..|++|+-++.+|+-|... -+|||=.
T Consensus 99 ~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a 143 (325)
T cd05602 99 RFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLC 143 (325)
T ss_pred HHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCC
Confidence 3455667777778888999999999999988432 3688743
No 156
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=21.44 E-value=1.3e+02 Score=27.97 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
..++...+.-++..-..|++|+=++.+|+-|.-. -+|||-..++.
T Consensus 105 ~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~ 153 (260)
T cd05069 105 VDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIE 153 (260)
T ss_pred HHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEcc
Confidence 3455556667777788999999999999988532 25888766654
No 157
>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea
Probab=21.41 E-value=1.2e+02 Score=28.31 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeecccccccccC
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFLDA 414 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFmD~ 414 (470)
.++...++-++.....|++||-++.+|+-|.- .-+|||-+..+..
T Consensus 103 ~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~ 151 (286)
T cd07832 103 SYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSE 151 (286)
T ss_pred HHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccC
Confidence 34444555556667889999999999998863 3478887665543
No 158
>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=21.32 E-value=1.6e+02 Score=27.39 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccccC
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLDA 414 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD~ 414 (470)
.++...+.-++.....|++||-++.+|+-|.+. -+|||-..++..
T Consensus 110 ~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~ 158 (269)
T cd05065 110 GMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLED 158 (269)
T ss_pred HHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCcccccccc
Confidence 444555566666667899999999999998653 358886666543
No 159
>KOG3404 consensus G10 protein/predicted nuclear transcription regulator [Transcription]
Probab=21.24 E-value=95 Score=29.13 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 012140 318 LDIVRTLADYAIRHHF 333 (470)
Q Consensus 318 ~~~l~~LaDy~I~~hy 333 (470)
.++-++|-||+++.-|
T Consensus 68 ~~IS~eLY~~~l~~~y 83 (145)
T KOG3404|consen 68 KAISRELYDYCLKEKY 83 (145)
T ss_pred HHHHHHHHHHHHHccc
Confidence 4677888888888655
No 160
>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla
Probab=21.00 E-value=85 Score=29.67 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFL 412 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFm 412 (470)
..++...++-++..-..|++|+-++.+|+-|... -+|||-...+
T Consensus 113 ~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T cd07862 113 KDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY 160 (290)
T ss_pred HHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEec
Confidence 3445556666667778899999999999988643 3688865544
No 161
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=20.94 E-value=2.3e+02 Score=26.27 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
..++...+.-++.-...|++|+-++.+|+-|... -+|||-+..+.
T Consensus 105 ~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~ 153 (260)
T cd05070 105 VDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIE 153 (260)
T ss_pred HHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeecc
Confidence 3344445555555567899999999999999764 36888776654
No 162
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=20.94 E-value=1.4e+02 Score=27.70 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccccC
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFLDA 414 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFmD~ 414 (470)
++...+.-++.=-..|++||-++.+|+-|.... .|||-...+..
T Consensus 100 i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~ 147 (257)
T cd05116 100 LVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGA 147 (257)
T ss_pred HHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCC
Confidence 334444444444577999999999999887543 58887766643
No 163
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=20.84 E-value=1.1e+02 Score=29.50 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGP 408 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGP 408 (470)
..++...++-++..-..|++||=++.+|+-|... -+|||=
T Consensus 127 ~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~dfg~ 170 (303)
T cd05088 127 LHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGL 170 (303)
T ss_pred HHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEeCcccc
Confidence 3344445555555668899999999999999643 267774
No 164
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=20.72 E-value=85 Score=30.26 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEe----eeecccccccc
Q 012140 365 AAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG----LTIDYGPFGFL 412 (470)
Q Consensus 365 ~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G----~TIDYGPfaFm 412 (470)
..++..+++ -++.=...|++||-+|.+|+-|.- .-+|||-+..+
T Consensus 118 ~~~~~~l~~----~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~ 165 (297)
T cd06656 118 AAVCRECLQ----ALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI 165 (297)
T ss_pred HHHHHHHHH----HHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEc
Confidence 334444444 444445679999999999998852 23777765544
No 165
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=20.66 E-value=1.1e+02 Score=28.34 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----ecccccccc
Q 012140 364 YAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPFGFL 412 (470)
Q Consensus 364 y~a~~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPfaFm 412 (470)
...++.++++-.+.| -..|++|+-++.+|+-|.... +|||-..++
T Consensus 102 ~~~i~~qi~~~l~~l----H~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~ 150 (256)
T cd05059 102 LLDMCSDVCEAMEYL----ESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYV 150 (256)
T ss_pred HHHHHHHHHHHHHHH----HHCCcccccccHhhEEECCCCcEEECCcccceec
Confidence 344555555555444 467999999999998886543 688765544
No 166
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=20.66 E-value=1.3e+02 Score=28.43 Aligned_cols=43 Identities=23% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccc
Q 012140 369 VEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGF 411 (470)
Q Consensus 369 ~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaF 411 (470)
..++...++-++.....|++|+-++.+|+.|... -.|||-...
T Consensus 133 ~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~ 179 (296)
T cd05051 133 LYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRN 179 (296)
T ss_pred HHHHHHHHHHHHHHHHcCccccccchhceeecCCCceEEccccceee
Confidence 4445555666666678999999999999998764 367775443
No 167
>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the
Probab=20.56 E-value=90 Score=29.64 Aligned_cols=41 Identities=22% Similarity=0.122 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCceeEee----eecccccc
Q 012140 370 EVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFG 410 (470)
Q Consensus 370 eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfa 410 (470)
.++...++-++..-..|++||-++.+|+-|.-. -+|||=+.
T Consensus 110 ~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~ 154 (293)
T cd07843 110 CLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAR 154 (293)
T ss_pred HHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCcee
Confidence 344455555666667899999999999887643 36777443
No 168
>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=20.56 E-value=1.2e+02 Score=28.33 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYG 407 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYG 407 (470)
+..++...+.-++..-.-|++|+=++.+|+-|.+-. .|+|
T Consensus 115 ~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg 158 (273)
T cd05074 115 LVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFG 158 (273)
T ss_pred HHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECccc
Confidence 355556666777777788999999999999886432 4665
No 169
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=20.38 E-value=92 Score=28.97 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEeee----eccccc
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLT----IDYGPF 409 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~T----IDYGPf 409 (470)
++...+.-++.=-..|++|+-++.+|+-|.-.. +|||=.
T Consensus 116 ~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~ 158 (272)
T cd06637 116 ICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS 158 (272)
T ss_pred HHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCc
Confidence 344444444444457999999999999886433 677743
No 170
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=20.38 E-value=81 Score=30.99 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccc
Q 012140 368 AVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYG 407 (470)
Q Consensus 368 ~~eVv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYG 407 (470)
...++...++-++.+...|++|+-++.+|+-|.-. -+|||
T Consensus 108 ~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg 151 (336)
T cd07849 108 IQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFG 151 (336)
T ss_pred HHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECccc
Confidence 34455666777888889999999999999987432 35666
No 171
>PF14855 PapJ: Pilus-assembly fibrillin subunit, chaperone
Probab=20.37 E-value=88 Score=30.55 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEeeeecc
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDY 406 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~TIDY 406 (470)
+-++|=++||.||.---.|=-+| ||..++-+.|+|
T Consensus 152 ~~~~Q~e~ia~~q~~~~~~~~s~-~~t~~l~L~i~Y 186 (187)
T PF14855_consen 152 LNEAQYEKIAAWQKRATAEEYSD-DNTNMLRLSIKY 186 (187)
T ss_pred eCHHHHHHHHhhhchhhhhhccc-cccceEEEEEec
Confidence 34567788999999888885555 999999999998
No 172
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=20.19 E-value=1.7e+02 Score=27.34 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccccccc
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPFGFLD 413 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPfaFmD 413 (470)
++...++-++.--..|++|+-++.+|+-|... -+|+|-..+++
T Consensus 107 ~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~ 153 (262)
T cd05071 107 MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 153 (262)
T ss_pred HHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeecc
Confidence 34445555556668899999999999988642 36888666554
No 173
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=20.15 E-value=89 Score=30.59 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCceeEee----eeccccc
Q 012140 371 VAERTASLVAQWQGVGFTHGVLNTDNMSILGL----TIDYGPF 409 (470)
Q Consensus 371 Vv~RtA~LVA~Wq~vGF~HGVmNTDNmSI~G~----TIDYGPf 409 (470)
++...++-++..-..|++|+=+..+|+-|... -+|||-.
T Consensus 110 ~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~ 152 (332)
T cd05614 110 YSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLS 152 (332)
T ss_pred HHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCC
Confidence 34445555666678899999999999988643 2687743
No 174
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=20.06 E-value=1.2e+02 Score=29.93 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=16.6
Q ss_pred HhhcccccccCCCceeEee
Q 012140 384 GVGFTHGVLNTDNMSILGL 402 (470)
Q Consensus 384 ~vGF~HGVmNTDNmSI~G~ 402 (470)
..|+|||=++.+|+-+.+.
T Consensus 186 ~~~l~HgD~~~~Nvl~~~~ 204 (307)
T TIGR00938 186 PRGVIHADLFPDNVLFDGD 204 (307)
T ss_pred CCccCCCCCCcCcEEEECC
Confidence 3799999999999999754
Done!