Query 012141
Match_columns 470
No_of_seqs 255 out of 328
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6p_A Baculoviral IAP repeat- 99.5 1.1E-14 3.9E-19 147.8 4.4 50 350-412 37-86 (345)
2 2yho_A E3 ubiquitin-protein li 98.6 1.3E-08 4.5E-13 82.5 2.7 41 428-469 8-48 (79)
3 2ea5_A Cell growth regulator w 98.5 6.3E-09 2.2E-13 82.2 -1.5 37 432-468 8-44 (68)
4 3mup_A Baculoviral IAP repeat- 98.5 1.7E-08 5.9E-13 89.2 0.4 55 351-418 52-106 (122)
5 3hl5_A Baculoviral IAP repeat- 98.5 3E-08 1E-12 83.9 1.9 51 349-412 42-92 (95)
6 4ic3_A E3 ubiquitin-protein li 98.4 1.4E-07 4.7E-12 75.0 2.8 41 428-469 14-54 (74)
7 3d9t_A Baculoviral IAP repeat- 98.4 5.6E-08 1.9E-12 82.4 0.5 49 351-412 46-94 (97)
8 1jd5_A DIAP1, apoptosis 1 inhi 98.4 5.5E-08 1.9E-12 86.2 0.5 50 351-413 58-107 (124)
9 2i3h_A Baculoviral IAP repeat- 98.3 9.6E-08 3.3E-12 85.6 1.5 49 351-412 80-128 (133)
10 2vje_B MDM4 protein; proto-onc 98.2 2.3E-07 7.9E-12 71.8 0.9 32 437-468 5-38 (63)
11 2ecg_A Baculoviral IAP repeat- 98.2 2.9E-07 1E-11 73.0 0.9 40 428-468 15-54 (75)
12 1g73_C Inhibitors of apoptosis 98.2 3.4E-07 1.2E-11 80.7 1.0 51 350-413 57-107 (121)
13 2vje_A E3 ubiquitin-protein li 98.1 4E-07 1.4E-11 70.7 0.8 30 439-468 8-39 (64)
14 2vm5_A Baculoviral IAP repeat- 98.1 3.7E-07 1.3E-11 78.7 -1.0 47 351-410 54-100 (106)
15 2qfa_A Baculoviral IAP repeat- 97.9 3.1E-06 1.1E-10 76.3 2.9 54 340-406 41-94 (142)
16 1se0_A Apoptosis 1 inhibitor; 97.4 3.2E-05 1.1E-09 67.7 1.2 44 350-406 45-88 (116)
17 2poi_A Baculoviral IAP repeat- 97.4 4E-05 1.4E-09 64.7 1.7 32 351-383 53-84 (94)
18 3m1d_A Baculoviral IAP repeat- 97.4 3.1E-05 1.1E-09 64.2 0.8 33 350-383 43-75 (85)
19 2qra_D XIAP, baculoviral IAP r 97.3 5.5E-05 1.9E-09 65.9 1.7 39 351-402 70-108 (111)
20 3siq_A Apoptosis 1 inhibitor; 97.3 6.4E-05 2.2E-09 67.6 2.1 49 340-404 60-108 (136)
21 1i4o_C X-linked IAP, baculovir 97.3 9.2E-05 3.1E-09 66.9 2.5 32 351-383 76-107 (141)
22 4ayc_A E3 ubiquitin-protein li 96.5 0.001 3.4E-08 58.2 2.2 33 433-467 48-80 (138)
23 2ecn_A Ring finger protein 141 96.4 0.00031 1.1E-08 54.0 -1.3 26 440-467 16-41 (70)
24 2ysj_A Tripartite motif-contai 96.2 0.00051 1.8E-08 51.8 -1.2 33 433-467 15-47 (63)
25 2y1n_A E3 ubiquitin-protein li 96.1 0.0018 6E-08 67.1 2.3 27 440-467 333-359 (389)
26 2ysl_A Tripartite motif-contai 96.1 0.0007 2.4E-08 52.2 -0.8 32 434-467 16-47 (73)
27 2ecj_A Tripartite motif-contai 96.1 0.00033 1.1E-08 51.6 -2.6 28 439-467 15-42 (58)
28 2d8t_A Dactylidin, ring finger 95.7 0.0028 9.5E-08 49.0 1.2 28 439-467 15-42 (71)
29 1bor_A Transcription factor PM 95.5 0.0022 7.5E-08 47.9 -0.0 30 438-468 5-34 (56)
30 2djb_A Polycomb group ring fin 95.5 0.0014 4.8E-08 50.8 -1.2 33 433-467 10-43 (72)
31 2yur_A Retinoblastoma-binding 95.5 0.0018 6.2E-08 50.7 -0.6 33 433-467 10-43 (74)
32 3fl2_A E3 ubiquitin-protein li 95.5 0.0085 2.9E-07 51.1 3.5 34 432-467 46-79 (124)
33 1z6u_A NP95-like ring finger p 95.4 0.0048 1.6E-07 55.2 1.8 34 432-467 72-105 (150)
34 2ct2_A Tripartite motif protei 95.4 0.0017 5.7E-08 51.5 -1.2 28 439-467 15-46 (88)
35 2ecw_A Tripartite motif-contai 95.3 0.0018 6.1E-08 50.7 -1.3 27 440-467 20-46 (85)
36 2y43_A E3 ubiquitin-protein li 95.3 0.0065 2.2E-07 49.7 2.0 35 431-467 15-50 (99)
37 1jm7_A BRCA1, breast cancer ty 95.2 0.0039 1.3E-07 51.7 0.5 33 433-467 16-48 (112)
38 2csy_A Zinc finger protein 183 95.2 0.0021 7.1E-08 50.9 -1.1 29 438-467 14-42 (81)
39 1chc_A Equine herpes virus-1 r 95.1 0.0062 2.1E-07 46.2 1.3 28 439-467 5-33 (68)
40 2ecv_A Tripartite motif-contai 94.9 0.0049 1.7E-07 48.1 0.3 28 439-467 19-46 (85)
41 1jm7_B BARD1, BRCA1-associated 94.7 0.011 3.9E-07 50.0 1.9 38 429-468 13-51 (117)
42 3lrq_A E3 ubiquitin-protein li 94.6 0.012 3.9E-07 48.8 1.8 36 430-467 14-50 (100)
43 2ecy_A TNF receptor-associated 94.4 0.0018 6.1E-08 49.3 -3.3 28 439-467 15-42 (66)
44 2kiz_A E3 ubiquitin-protein li 94.4 0.0059 2E-07 46.6 -0.5 27 440-467 15-44 (69)
45 2ect_A Ring finger protein 126 94.3 0.008 2.7E-07 46.9 0.2 27 440-467 16-45 (78)
46 2ea6_A Ring finger protein 4; 94.3 0.0027 9.4E-08 47.9 -2.5 28 439-467 15-49 (69)
47 2egp_A Tripartite motif-contai 94.2 0.0063 2.2E-07 47.3 -0.8 29 439-468 12-40 (79)
48 2ecm_A Ring finger and CHY zin 94.0 0.019 6.5E-07 41.6 1.7 27 440-467 6-36 (55)
49 2ckl_A Polycomb group ring fin 93.8 0.017 5.9E-07 48.0 1.2 34 432-467 9-43 (108)
50 2ep4_A Ring finger protein 24; 93.7 0.0074 2.5E-07 46.6 -1.1 27 440-467 16-45 (74)
51 2ckl_B Ubiquitin ligase protei 93.2 0.024 8.3E-07 50.6 1.2 33 433-467 49-82 (165)
52 1g25_A CDK-activating kinase a 93.0 0.015 5.2E-07 43.9 -0.3 27 440-467 4-35 (65)
53 3l11_A E3 ubiquitin-protein li 93.0 0.022 7.7E-07 47.7 0.7 28 440-468 16-43 (115)
54 2xeu_A Ring finger protein 4; 92.9 0.018 6.2E-07 42.7 -0.1 28 439-467 3-37 (64)
55 1x4j_A Ring finger protein 38; 92.8 0.042 1.4E-06 42.6 1.9 29 438-467 22-53 (75)
56 3ng2_A RNF4, snurf, ring finge 92.8 0.018 6.2E-07 43.8 -0.2 28 439-467 10-44 (71)
57 1iym_A EL5; ring-H2 finger, ub 92.4 0.045 1.6E-06 39.6 1.5 27 440-467 6-36 (55)
58 3ztg_A E3 ubiquitin-protein li 92.4 0.028 9.5E-07 45.1 0.4 28 439-467 13-41 (92)
59 1rmd_A RAG1; V(D)J recombinati 91.5 0.062 2.1E-06 45.1 1.6 32 434-467 19-50 (116)
60 1t1h_A Gspef-atpub14, armadill 91.1 0.065 2.2E-06 41.6 1.2 28 439-467 8-35 (78)
61 3hct_A TNF receptor-associated 90.4 0.083 2.8E-06 44.7 1.3 28 439-467 18-45 (118)
62 2l0b_A E3 ubiquitin-protein li 90.2 0.071 2.4E-06 43.2 0.7 28 439-467 40-70 (91)
63 1e4u_A Transcriptional repress 90.0 0.02 6.7E-07 46.1 -2.7 27 440-467 12-42 (78)
64 1wim_A KIAA0161 protein; ring 87.0 0.11 3.8E-06 42.2 -0.2 28 439-467 5-35 (94)
65 3knv_A TNF receptor-associated 86.5 0.21 7.3E-06 44.0 1.3 29 438-467 30-58 (141)
66 1v87_A Deltex protein 2; ring- 80.3 0.68 2.3E-05 38.3 1.9 26 441-467 27-70 (114)
67 2kr4_A Ubiquitin conjugation f 79.3 0.28 9.4E-06 39.6 -0.8 31 434-466 10-40 (85)
68 2kre_A Ubiquitin conjugation f 76.4 0.33 1.1E-05 40.6 -1.2 27 439-466 29-55 (100)
69 2c2l_A CHIP, carboxy terminus 76.2 1 3.5E-05 42.2 1.9 28 439-467 208-235 (281)
70 1wgm_A Ubiquitin conjugation f 74.2 0.48 1.7E-05 39.4 -0.8 31 434-466 18-49 (98)
71 4ap4_A E3 ubiquitin ligase RNF 73.7 0.66 2.2E-05 38.7 -0.1 28 439-467 72-106 (133)
72 2yu4_A E3 SUMO-protein ligase 68.2 1.9 6.4E-05 35.1 1.5 27 439-466 7-34 (94)
73 2ecl_A Ring-box protein 2; RNF 65.2 1.8 6.2E-05 34.2 0.8 25 441-466 17-56 (81)
74 2jun_A Midline-1; B-BOX, TRIM, 53.1 3 0.0001 33.8 0.1 28 439-467 3-33 (101)
75 2f42_A STIP1 homology and U-bo 52.1 4.8 0.00016 37.3 1.4 27 439-466 106-132 (179)
76 3dpl_R Ring-box protein 1; ubi 49.3 6.2 0.00021 33.2 1.5 25 441-466 39-81 (106)
77 2d8s_A Cellular modulator of i 47.9 6.7 0.00023 31.4 1.4 26 440-466 16-48 (80)
78 1vyx_A ORF K3, K3RING; zinc-bi 38.6 5.8 0.0002 30.1 -0.3 21 439-459 6-26 (60)
79 4a0k_B E3 ubiquitin-protein li 34.3 8.4 0.00029 33.2 -0.0 16 451-467 78-93 (117)
80 3htk_C E3 SUMO-protein ligase 27.1 28 0.00096 34.3 2.3 33 433-467 176-209 (267)
81 2zet_C Melanophilin; complex, 26.1 29 0.00099 31.3 2.0 29 439-468 68-101 (153)
No 1
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.48 E-value=1.1e-14 Score=147.77 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=46.7
Q ss_pred cccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCchhhhHHHH
Q 012141 350 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW 412 (470)
Q Consensus 350 ~~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~~~~~~e~~ 412 (470)
..|-+.=.+||..|.+ |+++||||+||+||+|+ | .||+.+||+||+++++
T Consensus 37 ~~D~v~Cf~C~~~l~~-We~~DdP~~eH~~~~p~--------C----~f~~~~kg~~~i~~~~ 86 (345)
T 3t6p_A 37 RNDDVKCFSCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQ 86 (345)
T ss_dssp STTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHH
T ss_pred CCCeEEecCCCCCccC-CCCCCCHHHHHHHhCCC--------C----ccHHHhccHHHHHHHH
Confidence 3789999999999999 99999999999999999 9 9999999999998666
No 2
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.61 E-value=1.3e-08 Score=82.45 Aligned_cols=41 Identities=27% Similarity=0.655 Sum_probs=36.3
Q ss_pred cHHHHHHhhhcccccccccccceeEEEecCCceeecccccCC
Q 012141 428 SRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLT 469 (470)
Q Consensus 428 ~~~~~~~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca~s 469 (470)
.+++.++++++. .|+||+++.+++|++||||.+.|.+|+.+
T Consensus 8 l~~~~~~l~~~~-~C~IC~~~~~~~v~~pCgH~~~C~~C~~~ 48 (79)
T 2yho_A 8 LQEKLRKLKEAM-LCMVCCEEEINSTFCPCGHTVCCESCAAQ 48 (79)
T ss_dssp HHHHHHHHHHHT-BCTTTSSSBCCEEEETTCBCCBCHHHHTT
T ss_pred HHHHHHcCCCCC-EeEEeCcccCcEEEECCCCHHHHHHHHHh
Confidence 456778888876 89999999999999999999999999865
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=6.3e-09 Score=82.18 Aligned_cols=37 Identities=38% Similarity=0.659 Sum_probs=31.8
Q ss_pred HHHhhhcccccccccccceeEEEecCCceeecccccC
Q 012141 432 FERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHL 468 (470)
Q Consensus 432 ~~~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca~ 468 (470)
.++++++...|+||+++.+++|++||||.+.|.+|+.
T Consensus 8 ~e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 8 VEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp CCCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHH
T ss_pred ccccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHh
Confidence 3445555669999999999999999999999999974
No 4
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=98.49 E-value=1.7e-08 Score=89.16 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=49.7
Q ss_pred ccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCchhhhHHHHHHHhhh
Q 012141 351 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAAL 418 (470)
Q Consensus 351 ~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~~~~~~e~~~~~~a~ 418 (470)
.|-+.=.+||..|.+ |+++||||+||+||+|+ | ++|+.+||+||+++++...+.+
T Consensus 52 ~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~P~--------C----~Fv~~~kg~~fi~~i~~~~~~~ 106 (122)
T 3mup_A 52 NDDVKCFCCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQGRYPHL 106 (122)
T ss_dssp TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHHHHCTTH
T ss_pred CCeEEecCcCCEecC-CCCCCCHHHHHHHHCcC--------C----cchhhcCcHHHHHHHHHhchhh
Confidence 688888899999999 99999999999999999 9 9999999999999988644443
No 5
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=98.49 E-value=3e-08 Score=83.87 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=47.4
Q ss_pred ccccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCchhhhHHHH
Q 012141 349 RAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW 412 (470)
Q Consensus 349 ~~~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~~~~~~e~~ 412 (470)
...|-+.=.+|+..|.+ |+++||||+||+|++|+ | .+|+.+||+|||++++
T Consensus 42 g~~D~v~Cf~C~~~l~~-We~~DdP~~eH~r~~p~--------C----~f~~~~kg~~fv~~i~ 92 (95)
T 3hl5_A 42 GEGDKVKCFHCGGGLTD-WKPSEDPWEQHAKWYPG--------C----KYLLEQKGQEYINNIH 92 (95)
T ss_dssp SSTTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHTCHHHHHHHT
T ss_pred CCCCeEEecCCCCCccC-cCCCCCHHHHHHHHCcC--------C----cchHhhccHHHHHHHH
Confidence 35788999999999999 99999999999999999 9 9999999999999875
No 6
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.37 E-value=1.4e-07 Score=74.99 Aligned_cols=41 Identities=34% Similarity=0.898 Sum_probs=35.1
Q ss_pred cHHHHHHhhhcccccccccccceeEEEecCCceeecccccCC
Q 012141 428 SRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLT 469 (470)
Q Consensus 428 ~~~~~~~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca~s 469 (470)
.+++.++++++. .|.||+++..+.|++||||.+.|.+|+..
T Consensus 14 ~~~~~~~~~~~~-~C~iC~~~~~~~~~~pCgH~~~C~~C~~~ 54 (74)
T 4ic3_A 14 TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCKQCAEA 54 (74)
T ss_dssp HHHHHHHHHHHT-BCTTTSSSBCCEEEETTCCBCCCHHHHTT
T ss_pred HHHHHhcCccCC-CCCCCCCCCCCEEEcCCCChhHHHHhhhc
Confidence 445667777766 89999999999999999999889999764
No 7
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=98.37 E-value=5.6e-08 Score=82.45 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=45.5
Q ss_pred ccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCchhhhHHHH
Q 012141 351 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW 412 (470)
Q Consensus 351 ~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~~~~~~e~~ 412 (470)
.|-+.=.+|+..|.+ |+++||||+||+||+|+ | ++|+.+||+||+++++
T Consensus 46 ~D~v~Cf~C~~~l~~-We~~Ddp~~eH~r~~p~--------C----~f~~~~kg~~~v~~~~ 94 (97)
T 3d9t_A 46 NDDVKCFCCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQ 94 (97)
T ss_dssp TTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------B----HHHHHHHCHHHHHHHT
T ss_pred CCEEEecCcCCEecC-CCCCCCHHHHHHHhCcc--------C----hhhHhhccHHHHHHHH
Confidence 577888899999999 99999999999999999 9 9999999999999874
No 8
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=98.37 E-value=5.5e-08 Score=86.20 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=47.2
Q ss_pred ccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCchhhhHHHHH
Q 012141 351 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWR 413 (470)
Q Consensus 351 ~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~~~~~~e~~~ 413 (470)
.|-+.=.+||..|.+ |+++||||+||+||+|+ | .+|+.+||++|++++..
T Consensus 58 ~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~P~--------C----~Fv~~~kg~~fv~~v~~ 107 (124)
T 1jd5_A 58 GDRVRCFSCGGGLMD-WNDNDEPWEQHALWLSQ--------C----RFVKLMKGQLYIDTVAA 107 (124)
T ss_dssp TTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHHH
T ss_pred CCEEEecCCCCEecC-CCCCCCHHHHHHHHCcC--------C----ceeecccchHHHHHHHh
Confidence 688888899999999 99999999999999999 9 99999999999998875
No 9
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=98.34 E-value=9.6e-08 Score=85.60 Aligned_cols=49 Identities=12% Similarity=0.276 Sum_probs=46.3
Q ss_pred ccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCchhhhHHHH
Q 012141 351 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW 412 (470)
Q Consensus 351 ~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~~~~~~e~~ 412 (470)
.|-+.=.+|+..|.+ |+++||||+||+||+|+ | .+|+.+||+||+++++
T Consensus 80 ~D~V~Cf~C~~~L~~-We~~DDP~~EH~r~~P~--------C----~Fv~~~Kg~~fv~~v~ 128 (133)
T 2i3h_A 80 QDKVRCFFCYGGLQS-WKRGDDPWTEHAKWFPG--------C----QFLLRSKGQEYINNIH 128 (133)
T ss_dssp TTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHC
T ss_pred CCEEEecccCCEeCC-CCCCCCHHHHHHHHCcC--------C----ceehhcccHHHHHHHh
Confidence 688888899999999 99999999999999999 9 9999999999999885
No 10
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.22 E-value=2.3e-07 Score=71.84 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=28.1
Q ss_pred hcccccccccccceeEEEe--cCCceeecccccC
Q 012141 437 NEKVLCRVCFEGDISVVLL--PCRHRILCRYDHL 468 (470)
Q Consensus 437 ~e~~~CkiC~~~~~~vVfl--PCgH~v~C~~Ca~ 468 (470)
++...|+||+|+.+|.+++ ||||.+.|.+|+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~ 38 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCAR 38 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHH
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHH
Confidence 3345899999999999888 9999999999985
No 11
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=2.9e-07 Score=73.02 Aligned_cols=40 Identities=35% Similarity=0.915 Sum_probs=33.4
Q ss_pred cHHHHHHhhhcccccccccccceeEEEecCCceeecccccC
Q 012141 428 SRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHL 468 (470)
Q Consensus 428 ~~~~~~~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca~ 468 (470)
.+++.++++++. .|.||+++.++.|++||||.+.|.+|+.
T Consensus 15 ~~~~~~~~~~~~-~C~IC~~~~~~~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 15 TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp HHHHHHHHHHHH-SCSSSCSSCCCBCCSSSCCCCBCHHHHH
T ss_pred hHHHHHcCCCCC-CCCcCCCCCCCEEEecCCCHHHHHHHhh
Confidence 345566676665 8999999999999999999988999964
No 12
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=98.16 E-value=3.4e-07 Score=80.72 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=46.5
Q ss_pred cccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCchhhhHHHHH
Q 012141 350 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWR 413 (470)
Q Consensus 350 ~~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~~~~~~e~~~ 413 (470)
..|-+.=.+|+..|.+ |+++||||+||+||+|+ | .+|+.+||+||++++..
T Consensus 57 ~~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~~P~--------C----~Fv~~~kg~~~v~~v~~ 107 (121)
T 1g73_C 57 EGDKVKCFHCGGGLTD-WKPSEDPWEQHAKWYPG--------C----KYLLEQKGQEYINNIHL 107 (121)
T ss_dssp STTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----HHHHHHHHHHHHHHHTC
T ss_pred CCCEEEcCcCCCCcCC-CCCCCCHHHHHHHHCcC--------C----cchhhccchhhhccccc
Confidence 4677888899999999 99999999999999999 9 99999999999997753
No 13
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.14 E-value=4e-07 Score=70.73 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=27.4
Q ss_pred ccccccccccceeEEEe--cCCceeecccccC
Q 012141 439 KVLCRVCFEGDISVVLL--PCRHRILCRYDHL 468 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVfl--PCgH~v~C~~Ca~ 468 (470)
+..|+||+|+.+|++++ ||||.+.|.+|+.
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~ 39 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAK 39 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHH
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHH
Confidence 34899999999999999 9999999999975
No 14
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=98.06 E-value=3.7e-07 Score=78.72 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=43.1
Q ss_pred ccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCchhhhHH
Q 012141 351 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEE 410 (470)
Q Consensus 351 ~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~~~~~~e 410 (470)
.|-+.=.+||..|.+ |+++||||+||+||+|+ | .+|+.+||.|++++
T Consensus 54 ~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~~p~--------C----~Fv~~~Kg~~~i~~ 100 (106)
T 2vm5_A 54 QDTVQCFSCGGCLGN-WEEGDDPWKEHAKWFPK--------C----EFLRSKKSSEEITQ 100 (106)
T ss_dssp TTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCCTTSCC
T ss_pred CCEEEccccCCEecC-CCCCCCHHHHHHHHCcC--------C----cchhhccCHHHHHH
Confidence 688888899999999 99999999999999999 9 89999999997654
No 15
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=97.95 E-value=3.1e-06 Score=76.26 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=46.0
Q ss_pred CceEEEEeeccccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCchh
Q 012141 340 TGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKE 406 (470)
Q Consensus 340 ~~~~~~~~s~~~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~~~ 406 (470)
.|-|+.=..+..|-+.=.+||..|.+ |+++||||+||+||+|+ | .+|+..|+.+
T Consensus 41 AGFyy~g~~~~~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~p~--------C----~F~~~~k~~~ 94 (142)
T 2qfa_A 41 AGFIHCPTENEPDLAQCFFCFKELEG-WEPDDDPIEEHKKHSSG--------C----AFLSVKKQFE 94 (142)
T ss_dssp TTEEECCBTTBTTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----GGGGCCSCGG
T ss_pred cCCCcCCCCCCCCEEEcCCCCCEecc-cCCCCCHHHHHHHHCcC--------C----cceecccccc
Confidence 45565555556788888899999999 99999999999999999 9 8999888865
No 16
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=97.43 E-value=3.2e-05 Score=67.74 Aligned_cols=44 Identities=14% Similarity=0.358 Sum_probs=38.0
Q ss_pred cccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCchh
Q 012141 350 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKE 406 (470)
Q Consensus 350 ~~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~~~ 406 (470)
..|-+.=.+||..|.+ |+++||||+||+||+|+ | .+|+..+...
T Consensus 45 ~~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~~p~--------C----~Fv~~~~~~n 88 (116)
T 1se0_A 45 AGDKVKCFFCGVEIGS-WEQEDQPVPEHQRWSPN--------C----PLLRRRTTNN 88 (116)
T ss_dssp STTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----TTTTTCCCCC
T ss_pred CCCEEEecCcCCEecC-CCCCCCHHHHHHHHCcc--------C----cceeeeccCc
Confidence 4688888899999999 99999999999999999 9 7777666443
No 17
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=97.42 E-value=4e-05 Score=64.72 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=30.3
Q ss_pred ccceeeeeeCcccCCcccCCCCChHHHhhhhhc
Q 012141 351 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 383 (470)
Q Consensus 351 ~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~ 383 (470)
.|-+.=.+||..|.+ |+++||||+||+|++|+
T Consensus 53 ~D~V~Cf~C~~~l~~-We~~DdP~~eH~r~~P~ 84 (94)
T 2poi_A 53 GDTVRCFSCHAAVDR-WQYGDSAVGRHRKVSPN 84 (94)
T ss_dssp TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT
T ss_pred CCEEEcccCCCEeCC-CCCCCCHHHHHHHHCcc
Confidence 588888899999999 99999999999999999
No 18
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=97.40 E-value=3.1e-05 Score=64.18 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=30.8
Q ss_pred cccceeeeeeCcccCCcccCCCCChHHHhhhhhc
Q 012141 350 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 383 (470)
Q Consensus 350 ~~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~ 383 (470)
..|-+.=.+|+..|.+ |+++||||+||+|++|+
T Consensus 43 ~~D~v~Cf~C~~~l~~-We~~DdP~~eH~~~~p~ 75 (85)
T 3m1d_A 43 VNDKVKCFCCGLMLDN-WKLGDSPIQKHKQLYPS 75 (85)
T ss_dssp STTCEEETTTCCEECS-CCTTCCHHHHHHHHCTT
T ss_pred CCCEEEeCCcCCEecC-CCCCCCHHHHHHHHCcc
Confidence 3688888899999999 99999999999999999
No 19
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=97.34 E-value=5.5e-05 Score=65.88 Aligned_cols=39 Identities=8% Similarity=0.273 Sum_probs=35.1
Q ss_pred ccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeec
Q 012141 351 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKM 402 (470)
Q Consensus 351 ~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~ 402 (470)
.|-+.=.+||..|.+ |+++||||+||+|++|+ | ++|+.+
T Consensus 70 ~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~sP~--------C----~Fv~~~ 108 (111)
T 2qra_D 70 GDTVRCFSCHAAVDR-WQYGDSAVGRHRKVSPN--------C----RFINGF 108 (111)
T ss_dssp TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----TTTTTT
T ss_pred CCEEEcccCCCEeCC-CCCCCCHHHHHHHHCcc--------C----cchhhc
Confidence 688888899999999 99999999999999999 9 776654
No 20
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=97.34 E-value=6.4e-05 Score=67.62 Aligned_cols=49 Identities=20% Similarity=0.492 Sum_probs=40.4
Q ss_pred CceEEEEeeccccceeeeeeCcccCCcccCCCCChHHHhhhhhcCCCCCccccCCCccceeecCc
Q 012141 340 TGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPK 404 (470)
Q Consensus 340 ~~~~~~~~s~~~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~~~~~~~~~c~~~p~~v~~~~~ 404 (470)
.|-|+. ...|-+.=.+||..|.+ |+++||||+||+||+|+ | ++|+..+.
T Consensus 60 AGFYYt---G~~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~sP~--------C----~Fv~~~~~ 108 (136)
T 3siq_A 60 TGMYFT---HAGDKVKCFFCGVEIGS-WEQEDQPVPEHQRWSPN--------C----PLLRRRTT 108 (136)
T ss_dssp TTEEEC---SSTTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------C----TTTTTCCC
T ss_pred CCCeEc---CCCCeEEEeccCCEecC-CCCCCCHHHHHHHHCcC--------C----cceecccC
Confidence 445553 35788888899999999 99999999999999999 9 77766554
No 21
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=97.28 E-value=9.2e-05 Score=66.89 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=30.4
Q ss_pred ccceeeeeeCcccCCcccCCCCChHHHhhhhhc
Q 012141 351 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 383 (470)
Q Consensus 351 ~~~~~~~~~~~rl~~~W~~de~~wee~Ar~~~~ 383 (470)
.|-+.=.+||..|.+ |+++||||+||+||+|+
T Consensus 76 ~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~P~ 107 (141)
T 1i4o_C 76 GDQVQCFCCGGKLKN-WEPCDRAWSEHRRHFPN 107 (141)
T ss_pred CCEEEeccCCCEecC-CCCCCCHHHHHHHHCcC
Confidence 688888899999999 99999999999999999
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.45 E-value=0.001 Score=58.24 Aligned_cols=33 Identities=39% Similarity=0.726 Sum_probs=26.9
Q ss_pred HHhhhcccccccccccceeEEEecCCceeeccccc
Q 012141 433 ERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 433 ~~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
+.+++| ..|.||++.-.+.|.+||||. -|..|.
T Consensus 48 ~~~~~~-~~C~iC~~~~~~~~~~~CgH~-fc~~Ci 80 (138)
T 4ayc_A 48 DVLENE-LQCIICSEYFIEAVTLNCAHS-FCSYCI 80 (138)
T ss_dssp HHHHHH-SBCTTTCSBCSSEEEETTSCE-EEHHHH
T ss_pred Hhcccc-CCCcccCcccCCceECCCCCC-ccHHHH
Confidence 334444 489999999999999999996 598885
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.41 E-value=0.00031 Score=53.99 Aligned_cols=26 Identities=31% Similarity=0.896 Sum_probs=23.4
Q ss_pred cccccccccceeEEEecCCceeeccccc
Q 012141 440 VLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 440 ~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
..|.||++...+ +.+||||. .|.+|.
T Consensus 16 ~~C~IC~~~~~~-~~~~CgH~-fc~~Ci 41 (70)
T 2ecn_A 16 EECCICMDGRAD-LILPCAHS-FCQKCI 41 (70)
T ss_dssp CCCSSSCCSCCS-EEETTTEE-ECHHHH
T ss_pred CCCeeCCcCccC-cccCCCCc-ccHHHH
Confidence 489999999999 99999999 598885
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.17 E-value=0.00051 Score=51.80 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=26.9
Q ss_pred HHhhhcccccccccccceeEEEecCCceeeccccc
Q 012141 433 ERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 433 ~~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
++++++ ..|.||++.-.+.+.+||||.. |.+|.
T Consensus 15 ~~~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 47 (63)
T 2ysj_A 15 NKLQEE-VICPICLDILQKPVTIDCGHNF-CLKCI 47 (63)
T ss_dssp CCCCCC-CBCTTTCSBCSSCEECTTSSEE-CHHHH
T ss_pred HhCccC-CCCCcCCchhCCeEEeCCCCcc-hHHHH
Confidence 334444 4899999999999999999995 88885
No 25
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.15 E-value=0.0018 Score=67.08 Aligned_cols=27 Identities=37% Similarity=0.821 Sum_probs=25.2
Q ss_pred cccccccccceeEEEecCCceeeccccc
Q 012141 440 VLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 440 ~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
..|.||++...+.+.+||||.. |..|.
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci 359 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCL 359 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHH
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHH
Confidence 4899999999999999999997 99985
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.09 E-value=0.0007 Score=52.17 Aligned_cols=32 Identities=31% Similarity=0.643 Sum_probs=26.3
Q ss_pred HhhhcccccccccccceeEEEecCCceeeccccc
Q 012141 434 RLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 434 ~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
+++++ ..|.||++.-.+.+.+||||.. |.+|.
T Consensus 16 ~~~~~-~~C~IC~~~~~~~~~~~CgH~f-C~~Ci 47 (73)
T 2ysl_A 16 KLQEE-VICPICLDILQKPVTIDCGHNF-CLKCI 47 (73)
T ss_dssp CCCCC-CBCTTTCSBCSSEEECTTCCEE-EHHHH
T ss_pred hCccC-CEeccCCcccCCeEEcCCCChh-hHHHH
Confidence 33344 4899999999999999999995 88885
No 27
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.07 E-value=0.00033 Score=51.57 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=24.6
Q ss_pred ccccccccccceeEEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+.+.+||||.. |.+|.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 42 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVIIECGHNF-CKACI 42 (58)
T ss_dssp CCBCSSSCCBCSSCCCCSSCCCC-CHHHH
T ss_pred CCCCccCCcccCccEeCCCCCcc-CHHHH
Confidence 34899999999999999999985 88884
No 28
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.72 E-value=0.0028 Score=49.01 Aligned_cols=28 Identities=29% Similarity=0.682 Sum_probs=24.8
Q ss_pred ccccccccccceeEEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+.+.+||||. .|.+|.
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci 42 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHV-FCYLCV 42 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEE-EEHHHH
T ss_pred CCCCccCCcccCCCEEccCCCH-HHHHHH
Confidence 3489999999999999999999 488885
No 29
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.53 E-value=0.0022 Score=47.91 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=25.9
Q ss_pred cccccccccccceeEEEecCCceeecccccC
Q 012141 438 EKVLCRVCFEGDISVVLLPCRHRILCRYDHL 468 (470)
Q Consensus 438 e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca~ 468 (470)
|...|.||++.-.+-+.+||||.. |.+|..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~ 34 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLE 34 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCS
T ss_pred cCCCceEeCCccCCeEEcCCCCcc-cHHHHc
Confidence 445899999999999999999975 888864
No 30
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.52 E-value=0.0014 Score=50.85 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=26.0
Q ss_pred HHhhhcccccccccccceeEEEe-cCCceeeccccc
Q 012141 433 ERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 467 (470)
Q Consensus 433 ~~l~~e~~~CkiC~~~~~~vVfl-PCgH~v~C~~Ca 467 (470)
++++++ ..|.||++.-.+.+.+ ||||.. |.+|.
T Consensus 10 ~~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 43 (72)
T 2djb_A 10 SELTPY-ILCSICKGYLIDATTITECLHTF-CKSCI 43 (72)
T ss_dssp CCCCGG-GSCTTTSSCCSSCEECSSSCCEE-CHHHH
T ss_pred hhcCCC-CCCCCCChHHHCcCEECCCCCHH-HHHHH
Confidence 334444 4899999999988887 999986 88874
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=95.51 E-value=0.0018 Score=50.68 Aligned_cols=33 Identities=24% Similarity=0.620 Sum_probs=26.7
Q ss_pred HHhhhcccccccccccceeEEEec-CCceeeccccc
Q 012141 433 ERLQNEKVLCRVCFEGDISVVLLP-CRHRILCRYDH 467 (470)
Q Consensus 433 ~~l~~e~~~CkiC~~~~~~vVflP-CgH~v~C~~Ca 467 (470)
++++++ ..|.||++.-.+-|.+| |||.. |.+|.
T Consensus 10 ~~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 43 (74)
T 2yur_A 10 DPIPDE-LLCLICKDIMTDAVVIPCCGNSY-CDECI 43 (74)
T ss_dssp CCSCGG-GSCSSSCCCCTTCEECSSSCCEE-CTTHH
T ss_pred ccCCCC-CCCcCCChHHhCCeEcCCCCCHH-HHHHH
Confidence 334444 48999999999999999 99975 88884
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=95.48 E-value=0.0085 Score=51.11 Aligned_cols=34 Identities=18% Similarity=0.442 Sum_probs=27.9
Q ss_pred HHHhhhcccccccccccceeEEEecCCceeeccccc
Q 012141 432 FERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 432 ~~~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
.+.++++- .|.||++.-.+-|.+||||.. |..|.
T Consensus 46 ~~~~~~~~-~C~IC~~~~~~p~~~~CgH~f-C~~Ci 79 (124)
T 3fl2_A 46 LSKVEETF-QCICCQELVFRPITTVCQHNV-CKDCL 79 (124)
T ss_dssp HHHHHHHT-BCTTTSSBCSSEEECTTSCEE-EHHHH
T ss_pred HHhCccCC-CCCcCChHHcCcEEeeCCCcc-cHHHH
Confidence 35555554 899999999999999999986 88774
No 33
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.43 E-value=0.0048 Score=55.23 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=27.5
Q ss_pred HHHhhhcccccccccccceeEEEecCCceeeccccc
Q 012141 432 FERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 432 ~~~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
.++++++ ..|.||++.-.+-|.+||||.. |..|.
T Consensus 72 ~~~l~~~-~~C~IC~~~~~~pv~~~CgH~f-C~~Ci 105 (150)
T 1z6u_A 72 LKKLEQS-FMCVCCQELVYQPVTTECFHNV-CKDCL 105 (150)
T ss_dssp HHHHHHH-TBCTTTSSBCSSEEECTTSCEE-EHHHH
T ss_pred HHhCccC-CEeecCChhhcCCEEcCCCCch-hHHHH
Confidence 3445555 4899999999999999999975 88774
No 34
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.37 E-value=0.0017 Score=51.54 Aligned_cols=28 Identities=36% Similarity=0.670 Sum_probs=24.0
Q ss_pred cccccccccccee----EEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDIS----VVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~----vVflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+ .+.+||||.. |.+|.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci 46 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTI-CRQCL 46 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHH
T ss_pred CCCCccCCccccccCCCeEECCCCChh-hHHHH
Confidence 3489999999888 9999999976 88885
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.30 E-value=0.0018 Score=50.71 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=24.0
Q ss_pred cccccccccceeEEEecCCceeeccccc
Q 012141 440 VLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 440 ~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
..|.||++.-.+-+.+||||.. |.+|.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 46 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSF-CRACI 46 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCB-CHHHH
T ss_pred CCCcCCChhhCcceeCCCCCHH-HHHHH
Confidence 4899999999999999999975 88885
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.29 E-value=0.0065 Score=49.75 Aligned_cols=35 Identities=20% Similarity=0.496 Sum_probs=27.6
Q ss_pred HHHHhhhcccccccccccceeEEEe-cCCceeeccccc
Q 012141 431 EFERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 467 (470)
Q Consensus 431 ~~~~l~~e~~~CkiC~~~~~~vVfl-PCgH~v~C~~Ca 467 (470)
..+.++++. .|.||++.-.+-+.+ ||||.. |.+|.
T Consensus 15 ~~~~~~~~~-~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 50 (99)
T 2y43_A 15 VMKTIDDLL-RCGICFEYFNIAMIIPQCSHNY-CSLCI 50 (99)
T ss_dssp GGHHHHHHT-BCTTTCSBCSSEEECTTTCCEE-EHHHH
T ss_pred HHHhCCCCC-CcccCChhhCCcCEECCCCCHh-hHHHH
Confidence 445565554 899999999999888 999986 77774
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.23 E-value=0.0039 Score=51.68 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=26.7
Q ss_pred HHhhhcccccccccccceeEEEecCCceeeccccc
Q 012141 433 ERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 433 ~~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
+.++++ ..|.||++.-.+.+.+||||.. |.+|.
T Consensus 16 ~~~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 48 (112)
T 1jm7_A 16 NAMQKI-LECPICLELIKEPVSTKCDHIF-CKFCM 48 (112)
T ss_dssp HHHHHH-TSCSSSCCCCSSCCBCTTSCCC-CSHHH
T ss_pred HhccCC-CCCcccChhhcCeEECCCCCHH-HHHHH
Confidence 444444 4899999999999999999976 88884
No 38
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.23 E-value=0.0021 Score=50.87 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=25.3
Q ss_pred cccccccccccceeEEEecCCceeeccccc
Q 012141 438 EKVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 438 e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
+...|.||++.-.+.+.+||||.. |.+|.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 42 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYF-CESCA 42 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEE-EHHHH
T ss_pred CCCCCcCCCchhcCeeEccCCCHh-HHHHH
Confidence 345899999999999999999986 88885
No 39
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.12 E-value=0.0062 Score=46.21 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=24.2
Q ss_pred cccccccccccee-EEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDIS-VVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~-vVflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+ ++.+||||. .|.+|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci 33 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCI 33 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHH
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHH
Confidence 3489999999888 699999999 588885
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.94 E-value=0.0049 Score=48.12 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=24.6
Q ss_pred ccccccccccceeEEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+.+.+||||.. |.+|.
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 46 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSLDCGHSF-CQACL 46 (85)
T ss_dssp CCCCTTTCSCCSSCBCCSSSCCB-CTTHH
T ss_pred CCCCCCCCcccCCceeCCCCCHH-HHHHH
Confidence 34899999999999999999985 88885
No 41
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.69 E-value=0.011 Score=50.02 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=30.7
Q ss_pred HHHHHHhhhcccccccccccceeEEEe-cCCceeecccccC
Q 012141 429 RQEFERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDHL 468 (470)
Q Consensus 429 ~~~~~~l~~e~~~CkiC~~~~~~vVfl-PCgH~v~C~~Ca~ 468 (470)
.+..+.++++- .|.||++.-.+-|.+ ||||.. |..|..
T Consensus 13 ~~~~~~l~~~~-~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~ 51 (117)
T 1jm7_B 13 RAALDRLEKLL-RCSRCTNILREPVCLGGCEHIF-CSNCVS 51 (117)
T ss_dssp HHHHHHHHHTT-SCSSSCSCCSSCBCCCSSSCCB-CTTTGG
T ss_pred HHHHHhchhCC-CCCCCChHhhCccEeCCCCCHH-HHHHHH
Confidence 34456666654 899999999999999 999987 888864
No 42
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.62 E-value=0.012 Score=48.79 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHHhhhcccccccccccceeEEE-ecCCceeeccccc
Q 012141 430 QEFERLQNEKVLCRVCFEGDISVVL-LPCRHRILCRYDH 467 (470)
Q Consensus 430 ~~~~~l~~e~~~CkiC~~~~~~vVf-lPCgH~v~C~~Ca 467 (470)
...+.++++- .|.||++.-.+-|. +||||.. |..|-
T Consensus 14 ~~~~~l~~~~-~C~IC~~~~~~p~~~~~CgH~F-C~~Ci 50 (100)
T 3lrq_A 14 QSVESIAEVF-RCFICMEKLRDARLCPHCSKLC-CFSCI 50 (100)
T ss_dssp HHHHHHHHHT-BCTTTCSBCSSEEECTTTCCEE-EHHHH
T ss_pred cccccCCCCC-CCccCCccccCccccCCCCChh-hHHHH
Confidence 3456666665 89999999999999 9999986 77774
No 43
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.43 E-value=0.0018 Score=49.30 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.4
Q ss_pred ccccccccccceeEEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+.+.+||||.. |.+|.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 42 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQTECGHRF-CESCM 42 (66)
T ss_dssp CEECTTTCCEESSCCCCSSSCCC-CHHHH
T ss_pred CCCCCCCChHhcCeeECCCCCHH-HHHHH
Confidence 34899999999999999999985 88885
No 44
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.36 E-value=0.0059 Score=46.57 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=21.3
Q ss_pred cccccccc---cceeEEEecCCceeeccccc
Q 012141 440 VLCRVCFE---GDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 440 ~~CkiC~~---~~~~vVflPCgH~v~C~~Ca 467 (470)
..|.||++ .+.+++.+||||.. |.+|.
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci 44 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLF-HQVCV 44 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEE-EHHHH
T ss_pred CCCeeCCccccCCCcEEEeCCCCHH-HHHHH
Confidence 47999955 44678999999985 77774
No 45
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.34 E-value=0.008 Score=46.90 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=21.2
Q ss_pred cccccccc---cceeEEEecCCceeeccccc
Q 012141 440 VLCRVCFE---GDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 440 ~~CkiC~~---~~~~vVflPCgH~v~C~~Ca 467 (470)
..|.||++ .+..++.+||||.. |.+|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci 45 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLF-HDSCI 45 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEE-ETTTT
T ss_pred CCCeeCCccccCCCCEEEeCCCCee-cHHHH
Confidence 48999955 44677888999974 88885
No 46
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.32 E-value=0.0027 Score=47.91 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=22.5
Q ss_pred ccccccccccceeE-------EEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDISV-------VLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~v-------VflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+. +.+||||.. |.+|.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 49 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 49 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChh-cHHHH
Confidence 34899999986654 999999964 88875
No 47
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.15 E-value=0.0063 Score=47.30 Aligned_cols=29 Identities=31% Similarity=0.608 Sum_probs=25.0
Q ss_pred ccccccccccceeEEEecCCceeecccccC
Q 012141 439 KVLCRVCFEGDISVVLLPCRHRILCRYDHL 468 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH~v~C~~Ca~ 468 (470)
...|.||++.-.+.+.+||||.. |.+|..
T Consensus 12 ~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~ 40 (79)
T 2egp_A 12 EVTCPICLELLTEPLSLDCGHSL-CRACIT 40 (79)
T ss_dssp CCEETTTTEECSSCCCCSSSCCC-CHHHHS
T ss_pred CCCCcCCCcccCCeeECCCCCHH-HHHHHH
Confidence 34899999999999999999975 888865
No 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=94.03 E-value=0.019 Score=41.57 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=22.0
Q ss_pred ccccccccccee----EEEecCCceeeccccc
Q 012141 440 VLCRVCFEGDIS----VVLLPCRHRILCRYDH 467 (470)
Q Consensus 440 ~~CkiC~~~~~~----vVflPCgH~v~C~~Ca 467 (470)
..|.||++.-.+ ++.+||||.. |.+|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci 36 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLL-HRTCY 36 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEE-ETTHH
T ss_pred CcCcccChhhcCCCcCeEecCCCCcc-cHHHH
Confidence 479999997544 9999999964 88885
No 49
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=93.83 E-value=0.017 Score=48.03 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=27.3
Q ss_pred HHHhhhcccccccccccceeEEEe-cCCceeeccccc
Q 012141 432 FERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 467 (470)
Q Consensus 432 ~~~l~~e~~~CkiC~~~~~~vVfl-PCgH~v~C~~Ca 467 (470)
.+.++++. .|.||++.-.+-|.+ ||||.. |..|.
T Consensus 9 ~~~~~~~~-~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 43 (108)
T 2ckl_A 9 ITELNPHL-MCVLCGGYFIDATTIIECLHSF-CKTCI 43 (108)
T ss_dssp HHHHGGGT-BCTTTSSBCSSEEEETTTCCEE-EHHHH
T ss_pred hhccCCcC-CCccCChHHhCcCEeCCCCChh-hHHHH
Confidence 34555554 899999999999998 999986 77774
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.74 E-value=0.0074 Score=46.64 Aligned_cols=27 Identities=33% Similarity=0.666 Sum_probs=20.8
Q ss_pred ccccccccc---ceeEEEecCCceeeccccc
Q 012141 440 VLCRVCFEG---DISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 440 ~~CkiC~~~---~~~vVflPCgH~v~C~~Ca 467 (470)
..|.||++. +..++.+||||.. |.+|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci 45 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAF-HRKCL 45 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEE-EHHHH
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEe-cHHHH
Confidence 389999987 3556778999984 77774
No 51
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=93.18 E-value=0.024 Score=50.57 Aligned_cols=33 Identities=24% Similarity=0.585 Sum_probs=25.7
Q ss_pred HHhhhcccccccccccceeEEEe-cCCceeeccccc
Q 012141 433 ERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 467 (470)
Q Consensus 433 ~~l~~e~~~CkiC~~~~~~vVfl-PCgH~v~C~~Ca 467 (470)
+.+.++ ..|.||++.-.+.|.+ ||||.. |.+|.
T Consensus 49 ~~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 82 (165)
T 2ckl_B 49 RSLHSE-LMCPICLDMLKNTMTTKECLHRF-CADCI 82 (165)
T ss_dssp -CCHHH-HBCTTTSSBCSSEEEETTTCCEE-EHHHH
T ss_pred hhCCCC-CCCcccChHhhCcCEeCCCCChh-HHHHH
Confidence 334444 4899999999999888 999976 88874
No 52
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.04 E-value=0.015 Score=43.92 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=20.1
Q ss_pred cccccccc-ccee----EEEecCCceeeccccc
Q 012141 440 VLCRVCFE-GDIS----VVLLPCRHRILCRYDH 467 (470)
Q Consensus 440 ~~CkiC~~-~~~~----vVflPCgH~v~C~~Ca 467 (470)
..|.||++ .-.+ ++.+||||.. |.+|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci 35 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCV 35 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHH
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHh-HHHHH
Confidence 47999999 2222 3678999986 88885
No 53
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=93.01 E-value=0.022 Score=47.73 Aligned_cols=28 Identities=32% Similarity=0.738 Sum_probs=24.7
Q ss_pred cccccccccceeEEEecCCceeecccccC
Q 012141 440 VLCRVCFEGDISVVLLPCRHRILCRYDHL 468 (470)
Q Consensus 440 ~~CkiC~~~~~~vVflPCgH~v~C~~Ca~ 468 (470)
..|.||++.-.+-|.+||||.. |..|..
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~ 43 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTL-CKPCFQ 43 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEE-CHHHHC
T ss_pred CCCccCCcccCceeEcCCCCHH-hHHHHH
Confidence 4899999999999999999985 888854
No 54
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=92.89 E-value=0.018 Score=42.66 Aligned_cols=28 Identities=29% Similarity=0.645 Sum_probs=22.1
Q ss_pred cccccccccccee-------EEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDIS-------VVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~-------vVflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+ ++.+||||.. |.+|.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 37 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 37 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHH
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCch-hHHHH
Confidence 3479999997554 4899999995 88775
No 55
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.79 E-value=0.042 Score=42.60 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=22.1
Q ss_pred ccccccccccc---ceeEEEecCCceeeccccc
Q 012141 438 EKVLCRVCFEG---DISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 438 e~~~CkiC~~~---~~~vVflPCgH~v~C~~Ca 467 (470)
+...|.||++. +..++.+||||.. |.+|.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci 53 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCV 53 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEE-ETTHH
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHh-HHHHH
Confidence 33479999954 4457889999984 88885
No 56
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=92.77 E-value=0.018 Score=43.75 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=22.3
Q ss_pred ccccccccccceeE-------EEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDISV-------VLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~v-------VflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+- +.+||||.. |.+|.
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 44 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 44 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHH
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChH-hHHHH
Confidence 34899999876554 999999975 88875
No 57
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=92.41 E-value=0.045 Score=39.61 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=21.9
Q ss_pred ccccccccccee---EEEec-CCceeeccccc
Q 012141 440 VLCRVCFEGDIS---VVLLP-CRHRILCRYDH 467 (470)
Q Consensus 440 ~~CkiC~~~~~~---vVflP-CgH~v~C~~Ca 467 (470)
..|.||++.-.+ ++.+| |||.. |.+|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci 36 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGF-HAECV 36 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEE-CTTHH
T ss_pred CcCccCCccccCCCceEECCCCCCcc-cHHHH
Confidence 479999988655 78888 99974 88884
No 58
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=92.40 E-value=0.028 Score=45.13 Aligned_cols=28 Identities=25% Similarity=0.623 Sum_probs=24.2
Q ss_pred ccccccccccceeEEEec-CCceeeccccc
Q 012141 439 KVLCRVCFEGDISVVLLP-CRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflP-CgH~v~C~~Ca 467 (470)
...|.||++.-.+-|.+| |||.. |..|.
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 41 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSY-CDECI 41 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEE-CHHHH
T ss_pred CCCCCCCChhhcCceECCCCCCHH-HHHHH
Confidence 358999999999999999 99986 77774
No 59
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=91.49 E-value=0.062 Score=45.06 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=26.1
Q ss_pred HhhhcccccccccccceeEEEecCCceeeccccc
Q 012141 434 RLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 434 ~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
+++++ ..|.||++.-.+.|.+||||.. |.+|.
T Consensus 19 ~~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 50 (116)
T 1rmd_A 19 HFVKS-ISCQICEHILADPVETSCKHLF-CRICI 50 (116)
T ss_dssp HHHHH-TBCTTTCSBCSSEEECTTSCEE-EHHHH
T ss_pred hccCC-CCCCCCCcHhcCcEEcCCCCcc-cHHHH
Confidence 34444 4899999999999999999986 88774
No 60
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=91.10 E-value=0.065 Score=41.62 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=24.2
Q ss_pred ccccccccccceeEEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
...|.||++--.+-|.+||||.- |..|-
T Consensus 8 ~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci 35 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIVSTGQTY-ERSSI 35 (78)
T ss_dssp SSSCTTTSCCCSSEEEETTTEEE-EHHHH
T ss_pred cCCCCCccccccCCEEcCCCCee-cHHHH
Confidence 35899999999999999999986 77774
No 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=90.39 E-value=0.083 Score=44.67 Aligned_cols=28 Identities=32% Similarity=0.665 Sum_probs=24.4
Q ss_pred ccccccccccceeEEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+-|.+||||.. |.+|.
T Consensus 18 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 45 (118)
T 3hct_A 18 KYECPICLMALREAVQTPCGHRF-CKACI 45 (118)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEE-EHHHH
T ss_pred CCCCCcCChhhcCeEECCcCChh-hHHHH
Confidence 34899999999999999999986 87774
No 62
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=90.18 E-value=0.071 Score=43.22 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=21.2
Q ss_pred cccccccccccee---EEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDIS---VVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~---vVflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+ ++.+||||.. |.+|.
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci 70 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYF-HKPCV 70 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEE-EHHHH
T ss_pred CCCCcccChhhcCCCcEEecCCCChH-HHHHH
Confidence 3479999876444 8889999974 77774
No 63
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=90.04 E-value=0.02 Score=46.10 Aligned_cols=27 Identities=33% Similarity=0.795 Sum_probs=21.0
Q ss_pred cccccccccc--eeEEEec--CCceeeccccc
Q 012141 440 VLCRVCFEGD--ISVVLLP--CRHRILCRYDH 467 (470)
Q Consensus 440 ~~CkiC~~~~--~~vVflP--CgH~v~C~~Ca 467 (470)
..|-||+|.- .+.++.| |||.. |..|.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl 42 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQI-CRFCW 42 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHH
T ss_pred CcCCccCccCccccccccccCCCCCc-CHHHH
Confidence 4899999965 3567777 99975 88774
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.01 E-value=0.11 Score=42.17 Aligned_cols=28 Identities=14% Similarity=0.426 Sum_probs=19.9
Q ss_pred cccccccccccee--EE-EecCCceeeccccc
Q 012141 439 KVLCRVCFEGDIS--VV-LLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~--vV-flPCgH~v~C~~Ca 467 (470)
...|.||++.-.+ ++ +.||||.- |.+|-
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl 35 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCL 35 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHH
Confidence 3589999987443 33 34899986 88884
No 65
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=86.49 E-value=0.21 Score=44.03 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=24.8
Q ss_pred cccccccccccceeEEEecCCceeeccccc
Q 012141 438 EKVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 438 e~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
++..|.||++--.+-|-.||||.. |..|-
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci 58 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHRY-CSFCL 58 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEE-EHHHH
T ss_pred cCcCCCCCChhhcCcEECCCCCcc-CHHHH
Confidence 345899999998899999999986 88874
No 66
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=80.28 E-value=0.68 Score=38.31 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=20.0
Q ss_pred ccccccccc------------------eeEEEecCCceeeccccc
Q 012141 441 LCRVCFEGD------------------ISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 441 ~CkiC~~~~------------------~~vVflPCgH~v~C~~Ca 467 (470)
.|-||++.= ..++.+||||.- |.+|-
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci 70 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCL 70 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHH
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHH
Confidence 799998873 345589999975 87773
No 67
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=79.35 E-value=0.28 Score=39.57 Aligned_cols=31 Identities=16% Similarity=-0.075 Sum_probs=25.1
Q ss_pred HhhhcccccccccccceeEEEecCCceeecccc
Q 012141 434 RLQNEKVLCRVCFEGDISVVLLPCRHRILCRYD 466 (470)
Q Consensus 434 ~l~~e~~~CkiC~~~~~~vVflPCgH~v~C~~C 466 (470)
++.++ ..|-||.+--.|=|.+||||.. |..|
T Consensus 10 ~~p~~-~~CpI~~~~m~dPV~~~cGhtf-~r~~ 40 (85)
T 2kr4_A 10 DAPDE-FRDPLMDTLMTDPVRLPSGTVM-DRSI 40 (85)
T ss_dssp TCCTT-TBCTTTCSBCSSEEECTTSCEE-EHHH
T ss_pred cCchh-eECcccCchhcCCeECCCCCEE-CHHH
Confidence 33444 4899999999999999999975 7666
No 68
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=76.44 E-value=0.33 Score=40.55 Aligned_cols=27 Identities=15% Similarity=-0.127 Sum_probs=23.6
Q ss_pred ccccccccccceeEEEecCCceeecccc
Q 012141 439 KVLCRVCFEGDISVVLLPCRHRILCRYD 466 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH~v~C~~C 466 (470)
...|-||++--.|=|.+||||.. |..|
T Consensus 29 ~~~CpI~~~~m~dPV~~~cGhtf-~r~~ 55 (100)
T 2kre_A 29 EFRDPLMDTLMTDPVRLPSGTIM-DRSI 55 (100)
T ss_dssp TTBCTTTCSBCSSEEEETTTEEE-EHHH
T ss_pred hhCCcCccCcccCCeECCCCCEE-chHH
Confidence 35899999999999999999984 7766
No 69
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=76.17 E-value=1 Score=42.15 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=24.6
Q ss_pred ccccccccccceeEEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDISVVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH~v~C~~Ca 467 (470)
...|.||++--.|=|.+||||.. |..|-
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f-~~~~i 235 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITY-DRKDI 235 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEE-ETTHH
T ss_pred ccCCcCcCCHhcCCeECCCCCEE-CHHHH
Confidence 45899999999999999999986 87773
No 70
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=74.17 E-value=0.48 Score=39.36 Aligned_cols=31 Identities=19% Similarity=0.095 Sum_probs=24.8
Q ss_pred HhhhcccccccccccceeEEEecCC-ceeecccc
Q 012141 434 RLQNEKVLCRVCFEGDISVVLLPCR-HRILCRYD 466 (470)
Q Consensus 434 ~l~~e~~~CkiC~~~~~~vVflPCg-H~v~C~~C 466 (470)
++.+| ..|-||++--.|=|.+||| |.. |..|
T Consensus 18 ~~p~~-~~CpI~~~~m~dPV~~~cG~htf-~r~c 49 (98)
T 1wgm_A 18 DACDE-FLDPIMSTLMCDPVVLPSSRVTV-DRST 49 (98)
T ss_dssp SCCTT-TBCTTTCSBCSSEEECTTTCCEE-EHHH
T ss_pred cCcHh-cCCcCccccccCCeECCCCCeEE-CHHH
Confidence 33344 4899999999999999999 875 6665
No 71
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=73.65 E-value=0.66 Score=38.65 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=21.9
Q ss_pred cccccccccccee-------EEEecCCceeeccccc
Q 012141 439 KVLCRVCFEGDIS-------VVLLPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~~~~-------vVflPCgH~v~C~~Ca 467 (470)
...|.||++.-.+ .+..||||.- |.+|.
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 106 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 106 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHH
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChh-hHHHH
Confidence 4579999987555 3999999986 77774
No 72
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.23 E-value=1.9 Score=35.13 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=23.1
Q ss_pred ccccccccccceeEEEec-CCceeecccc
Q 012141 439 KVLCRVCFEGDISVVLLP-CRHRILCRYD 466 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflP-CgH~v~C~~C 466 (470)
...|-||++--.|=|.+| |||.- |..|
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f-~r~c 34 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTY-EEDA 34 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEE-EHHH
T ss_pred EeECcCcCchhcCCEEcCCCCCee-cHHH
Confidence 358999999999999997 99975 6665
No 73
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.23 E-value=1.8 Score=34.15 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=16.2
Q ss_pred cccccccccee--------------EEEe-cCCceeecccc
Q 012141 441 LCRVCFEGDIS--------------VVLL-PCRHRILCRYD 466 (470)
Q Consensus 441 ~CkiC~~~~~~--------------vVfl-PCgH~v~C~~C 466 (470)
.|.||++.-.+ ++.+ +|||.- +.+|
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~C 56 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCC 56 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHH
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHH
Confidence 57777775433 4444 599985 6655
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=53.11 E-value=3 Score=33.84 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=22.0
Q ss_pred cccccccccc-ceeEEE--ecCCceeeccccc
Q 012141 439 KVLCRVCFEG-DISVVL--LPCRHRILCRYDH 467 (470)
Q Consensus 439 ~~~CkiC~~~-~~~vVf--lPCgH~v~C~~Ca 467 (470)
...|-+|.+. ..+.|. ++|+|.. |..|.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl 33 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECL 33 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHH-hHHHC
Confidence 3589999974 556666 9999985 88885
No 75
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=52.14 E-value=4.8 Score=37.28 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=23.3
Q ss_pred ccccccccccceeEEEecCCceeecccc
Q 012141 439 KVLCRVCFEGDISVVLLPCRHRILCRYD 466 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH~v~C~~C 466 (470)
...|.||++--.|=|.+||||.. |..|
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtf-er~~ 132 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITY-DRKD 132 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEE-EHHH
T ss_pred hhcccCccccCCCCeECCCCCEE-CHHH
Confidence 45899999999999999999965 6665
No 76
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=49.33 E-value=6.2 Score=33.23 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=18.1
Q ss_pred ccccccccce------------------eEEEecCCceeecccc
Q 012141 441 LCRVCFEGDI------------------SVVLLPCRHRILCRYD 466 (470)
Q Consensus 441 ~CkiC~~~~~------------------~vVflPCgH~v~C~~C 466 (470)
.|-||++.-. .++.+||||.- +.+|
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~C 81 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHC 81 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHH
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHH
Confidence 6888877522 37889999985 5555
No 77
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.92 E-value=6.7 Score=31.39 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=18.0
Q ss_pred cccccccccc--eeEEEecCC-----ceeecccc
Q 012141 440 VLCRVCFEGD--ISVVLLPCR-----HRILCRYD 466 (470)
Q Consensus 440 ~~CkiC~~~~--~~vVflPCg-----H~v~C~~C 466 (470)
..|.||++.. -+.+.+||+ |.+ ..+|
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~C 48 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFV-HQAC 48 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTH
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCee-CHHH
Confidence 3799999642 244579996 876 5555
No 78
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=38.61 E-value=5.8 Score=30.11 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=15.7
Q ss_pred ccccccccccceeEEEecCCc
Q 012141 439 KVLCRVCFEGDISVVLLPCRH 459 (470)
Q Consensus 439 ~~~CkiC~~~~~~vVflPCgH 459 (470)
...|.||++.+-+-...||.+
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C 26 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGC 26 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCC
T ss_pred CCEeEEeecCCCCceecCcCC
Confidence 348999998766666799753
No 79
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=34.26 E-value=8.4 Score=33.24 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=0.0
Q ss_pred eEEEecCCceeeccccc
Q 012141 451 SVVLLPCRHRILCRYDH 467 (470)
Q Consensus 451 ~vVflPCgH~v~C~~Ca 467 (470)
.++..||||.- +.+|-
T Consensus 78 ~v~~~~C~H~F-H~~CI 93 (117)
T 4a0k_B 78 TVAWGVCNHAF-HFHCI 93 (117)
T ss_dssp -----------------
T ss_pred ccccCCcCceE-cHHHH
Confidence 34557999985 77774
No 80
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.14 E-value=28 Score=34.30 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=25.1
Q ss_pred HHhhhcccccccccccceeEEEe-cCCceeeccccc
Q 012141 433 ERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 467 (470)
Q Consensus 433 ~~l~~e~~~CkiC~~~~~~vVfl-PCgH~v~C~~Ca 467 (470)
.+.+.+ ..|-||++.-.+=|-. .|||.- |..|-
T Consensus 176 ~~~~~e-l~CPIcl~~f~DPVts~~CGHsF-cR~cI 209 (267)
T 3htk_C 176 EGGKIE-LTCPITCKPYEAPLISRKCNHVF-DRDGI 209 (267)
T ss_dssp CSSBCC-SBCTTTSSBCSSEEEESSSCCEE-EHHHH
T ss_pred cCCcee-eECcCccCcccCCeeeCCCCCcc-cHHHH
Confidence 344444 4899999999999975 999964 77663
No 81
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.10 E-value=29 Score=31.30 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=24.7
Q ss_pred cccccccccc-----ceeEEEecCCceeecccccC
Q 012141 439 KVLCRVCFEG-----DISVVLLPCRHRILCRYDHL 468 (470)
Q Consensus 439 ~~~CkiC~~~-----~~~vVflPCgH~v~C~~Ca~ 468 (470)
...|-+|... +...+..-|+|.| |..|..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~ 101 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSH 101 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEE
T ss_pred CccchhhcCccccccCCCCcCCCCCchh-hccccc
Confidence 3489999987 7788999999998 999973
Done!