Query 012142
Match_columns 470
No_of_seqs 277 out of 2026
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 23:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02226 2-oxoglutarate dehydr 100.0 1.4E-94 3.1E-99 754.8 43.8 388 74-470 75-463 (463)
2 PRK05704 dihydrolipoamide succ 100.0 6.5E-89 1.4E-93 710.3 44.3 382 89-470 1-407 (407)
3 PTZ00144 dihydrolipoamide succ 100.0 8.1E-89 1.8E-93 706.9 43.4 371 87-470 41-418 (418)
4 TIGR01347 sucB 2-oxoglutarate 100.0 3.8E-88 8.2E-93 703.2 44.6 379 91-470 1-403 (403)
5 PLN02744 dihydrolipoyllysine-r 100.0 4.6E-86 1E-90 703.3 41.2 391 78-468 98-539 (539)
6 KOG0559 Dihydrolipoamide succi 100.0 1.1E-86 2.4E-91 655.7 28.2 378 89-470 71-457 (457)
7 TIGR02927 SucB_Actino 2-oxoglu 100.0 2.5E-84 5.3E-89 703.9 41.6 379 88-466 133-585 (590)
8 PLN02528 2-oxoisovalerate dehy 100.0 1.1E-83 2.4E-88 673.1 40.7 376 93-470 1-415 (416)
9 COG0508 AceF Pyruvate/2-oxoglu 100.0 1E-83 2.2E-88 670.7 37.8 380 89-469 1-404 (404)
10 TIGR01349 PDHac_trf_mito pyruv 100.0 7.4E-83 1.6E-87 670.3 40.1 375 92-468 1-435 (435)
11 KOG0558 Dihydrolipoamide trans 100.0 1.3E-84 2.9E-89 638.1 24.3 413 46-470 26-473 (474)
12 TIGR01348 PDHac_trf_long pyruv 100.0 1E-82 2.2E-87 686.3 41.1 377 90-468 116-546 (546)
13 PRK11854 aceF pyruvate dehydro 100.0 9.1E-78 2E-82 658.5 42.5 379 88-468 204-633 (633)
14 KOG0557 Dihydrolipoamide acety 100.0 4.5E-77 9.8E-82 608.2 27.5 379 87-468 35-470 (470)
15 PRK11855 dihydrolipoamide acet 100.0 2.2E-74 4.7E-79 623.4 42.0 378 89-468 118-547 (547)
16 PRK11856 branched-chain alpha- 100.0 2.6E-73 5.7E-78 596.3 42.5 376 89-469 1-411 (411)
17 PF00198 2-oxoacid_dh: 2-oxoac 100.0 1.7E-67 3.7E-72 512.2 27.3 228 240-468 3-231 (231)
18 PRK14843 dihydrolipoamide acet 100.0 1.6E-67 3.4E-72 538.8 25.9 228 241-468 118-347 (347)
19 PRK11857 dihydrolipoamide acet 100.0 9.6E-67 2.1E-71 524.8 26.2 228 241-468 76-305 (306)
20 PRK12270 kgd alpha-ketoglutara 100.0 8.5E-55 1.9E-59 473.5 29.5 221 240-461 114-349 (1228)
21 PF00364 Biotin_lipoyl: Biotin 99.8 1.2E-18 2.7E-23 140.5 8.6 74 91-164 1-74 (74)
22 PRK14875 acetoin dehydrogenase 99.7 3.7E-17 8.1E-22 166.9 12.2 79 90-168 2-80 (371)
23 PRK11892 pyruvate dehydrogenas 99.7 2.3E-15 4.9E-20 160.1 19.8 81 90-170 2-83 (464)
24 PRK06748 hypothetical protein; 99.7 3.4E-16 7.3E-21 128.5 10.5 62 105-166 13-75 (83)
25 PRK05889 putative acetyl-CoA c 99.6 1.2E-14 2.6E-19 116.2 10.3 63 103-165 9-71 (71)
26 cd06663 Biotinyl_lipoyl_domain 99.5 5.5E-14 1.2E-18 112.4 10.0 72 93-164 2-73 (73)
27 COG0511 AccB Biotin carboxyl c 99.5 2.8E-14 6.1E-19 128.9 8.9 61 105-165 79-139 (140)
28 PRK11854 aceF pyruvate dehydro 99.5 1E-13 2.3E-18 153.1 11.6 77 89-167 1-77 (633)
29 PRK08225 acetyl-CoA carboxylas 99.5 1.9E-13 4.2E-18 108.7 9.0 61 105-165 10-70 (70)
30 TIGR02927 SucB_Actino 2-oxoglu 99.5 2.2E-13 4.8E-18 149.2 11.2 79 89-167 1-79 (590)
31 PRK06549 acetyl-CoA carboxylas 99.4 1.6E-12 3.5E-17 115.7 10.4 62 103-164 68-129 (130)
32 PRK11855 dihydrolipoamide acet 99.4 1.6E-12 3.5E-17 141.6 12.5 80 89-169 1-80 (547)
33 PRK07051 hypothetical protein; 99.4 5.6E-12 1.2E-16 103.2 10.3 69 91-165 4-79 (80)
34 PRK05641 putative acetyl-CoA c 99.3 4.8E-12 1E-16 115.8 10.2 62 103-164 91-152 (153)
35 TIGR01348 PDHac_trf_long pyruv 99.3 8.6E-12 1.9E-16 135.7 10.7 75 92-167 2-76 (546)
36 cd06850 biotinyl_domain The bi 99.3 2.5E-11 5.5E-16 94.3 9.4 62 103-164 6-67 (67)
37 PLN02983 biotin carboxyl carri 99.3 1.5E-11 3.2E-16 120.1 9.7 62 104-165 205-273 (274)
38 PF00302 CAT: Chloramphenicol 99.3 6.5E-10 1.4E-14 106.7 20.6 176 263-457 24-206 (206)
39 TIGR00531 BCCP acetyl-CoA carb 99.3 1.5E-11 3.2E-16 113.2 8.5 62 104-165 88-156 (156)
40 PRK13757 chloramphenicol acety 99.2 1.2E-09 2.5E-14 105.8 20.1 191 250-462 18-214 (219)
41 PRK14042 pyruvate carboxylase 99.2 4E-11 8.7E-16 130.8 10.9 62 105-166 534-595 (596)
42 PRK06302 acetyl-CoA carboxylas 99.2 4.6E-11 1E-15 109.8 8.7 62 104-165 87-155 (155)
43 cd06849 lipoyl_domain Lipoyl d 99.2 2.2E-10 4.9E-15 88.6 11.2 73 92-164 2-74 (74)
44 TIGR02712 urea_carbox urea car 99.1 2.4E-10 5.3E-15 134.1 10.5 62 104-165 1140-1201(1201)
45 TIGR01108 oadA oxaloacetate de 99.1 3.2E-10 6.9E-15 124.1 8.7 58 104-161 525-582 (582)
46 PRK14040 oxaloacetate decarbox 99.0 6.7E-10 1.4E-14 121.7 10.3 62 103-164 531-592 (593)
47 TIGR01235 pyruv_carbox pyruvat 99.0 8.3E-10 1.8E-14 128.7 10.1 62 104-165 1082-1143(1143)
48 COG4770 Acetyl/propionyl-CoA c 99.0 1.4E-09 3.1E-14 115.2 8.0 69 89-165 576-644 (645)
49 PRK09282 pyruvate carboxylase 98.9 4E-09 8.7E-14 115.8 10.4 63 103-165 529-591 (592)
50 PRK12999 pyruvate carboxylase; 98.9 7.4E-09 1.6E-13 121.2 10.1 61 105-165 1085-1145(1146)
51 COG1038 PycA Pyruvate carboxyl 98.7 1.7E-08 3.7E-13 110.3 6.3 61 105-165 1088-1148(1149)
52 COG4845 Chloramphenicol O-acet 98.6 1.7E-06 3.6E-11 81.7 16.8 182 263-466 27-217 (219)
53 KOG0369 Pyruvate carboxylase [ 98.5 1.9E-07 4.2E-12 100.4 6.6 61 105-165 1115-1175(1176)
54 KOG0238 3-Methylcrotonyl-CoA c 98.3 1E-06 2.2E-11 92.7 5.5 61 105-165 610-670 (670)
55 cd06848 GCS_H Glycine cleavage 98.2 2.1E-06 4.5E-11 72.7 6.1 65 89-154 14-79 (96)
56 KOG0368 Acetyl-CoA carboxylase 98.1 4.5E-06 9.9E-11 96.1 6.8 66 103-169 692-757 (2196)
57 TIGR03077 not_gcvH glycine cle 97.9 1.6E-05 3.5E-10 69.0 5.5 61 91-152 17-78 (110)
58 PRK09783 copper/silver efflux 97.9 5.5E-05 1.2E-09 80.0 9.6 67 103-169 130-245 (409)
59 TIGR00998 8a0101 efflux pump m 97.8 6.5E-05 1.4E-09 76.6 8.9 36 134-169 205-240 (334)
60 PRK00624 glycine cleavage syst 97.8 4.4E-05 9.5E-10 66.8 6.3 58 90-148 18-76 (114)
61 PRK13380 glycine cleavage syst 97.8 4.4E-05 9.5E-10 69.5 6.0 63 90-153 30-93 (144)
62 PRK10559 p-hydroxybenzoic acid 97.7 7.4E-05 1.6E-09 76.2 7.6 67 103-169 54-190 (310)
63 TIGR01730 RND_mfp RND family e 97.7 7.7E-05 1.7E-09 75.1 7.3 66 103-168 33-169 (322)
64 PRK01202 glycine cleavage syst 97.7 0.00013 2.8E-09 65.0 7.5 78 90-168 23-108 (127)
65 PRK10476 multidrug resistance 97.6 0.00013 2.8E-09 75.3 7.7 36 134-169 209-244 (346)
66 PRK15136 multidrug efflux syst 97.5 0.00023 5E-09 74.9 7.5 36 134-169 216-251 (390)
67 PRK09578 periplasmic multidrug 97.5 0.00024 5.1E-09 74.4 7.4 67 103-169 70-209 (385)
68 PRK03598 putative efflux pump 97.5 0.00023 5.1E-09 72.8 6.8 35 134-168 204-238 (331)
69 PF13533 Biotin_lipoyl_2: Biot 97.4 0.00027 5.9E-09 52.6 4.6 36 133-168 2-37 (50)
70 PRK09859 multidrug efflux syst 97.3 0.00049 1.1E-08 72.1 7.8 67 103-169 68-207 (385)
71 TIGR00527 gcvH glycine cleavag 97.3 0.00035 7.6E-09 62.3 5.2 61 91-152 23-84 (127)
72 PRK15030 multidrug efflux syst 97.3 0.0006 1.3E-08 71.8 7.7 67 103-169 72-211 (397)
73 PF13533 Biotin_lipoyl_2: Biot 97.2 0.00053 1.2E-08 51.0 4.7 29 103-131 9-37 (50)
74 PRK11556 multidrug efflux syst 97.2 0.00082 1.8E-08 71.3 7.0 66 103-168 94-232 (415)
75 PRK11578 macrolide transporter 97.1 0.0011 2.5E-08 68.9 7.5 67 103-169 68-222 (370)
76 PRK12784 hypothetical protein; 97.1 0.0026 5.7E-08 51.2 7.7 65 103-167 12-77 (84)
77 TIGR02971 heterocyst_DevB ABC 96.9 0.0023 5E-08 65.2 7.2 34 135-169 206-239 (327)
78 PF01597 GCV_H: Glycine cleava 96.9 0.0023 4.9E-08 56.7 6.0 45 105-149 31-76 (122)
79 PF12700 HlyD_2: HlyD family s 96.7 0.0015 3.1E-08 66.0 3.8 66 103-169 28-195 (328)
80 PRK05889 putative acetyl-CoA c 96.6 0.0041 8.9E-08 49.4 5.3 34 135-168 4-37 (71)
81 TIGR03309 matur_yqeB selenium- 96.5 0.0096 2.1E-07 58.9 7.8 61 103-169 171-231 (256)
82 COG0509 GcvH Glycine cleavage 96.3 0.0044 9.4E-08 55.3 4.2 58 90-148 25-83 (131)
83 PF13375 RnfC_N: RnfC Barrel s 96.1 0.013 2.7E-07 50.3 5.5 46 104-150 38-83 (101)
84 TIGR01843 type_I_hlyD type I s 96.0 0.019 4.1E-07 60.1 8.0 34 135-168 273-307 (423)
85 PRK06748 hypothetical protein; 95.9 0.014 3.1E-07 48.2 5.1 32 135-166 6-37 (83)
86 PRK08225 acetyl-CoA carboxylas 95.5 0.032 6.8E-07 44.1 5.5 34 135-168 3-36 (70)
87 cd06253 M14_ASTE_ASPA_like_3 A 95.5 0.049 1.1E-06 55.4 8.2 58 105-164 237-297 (298)
88 cd06850 biotinyl_domain The bi 95.3 0.03 6.5E-07 42.8 4.7 32 136-167 2-33 (67)
89 COG0511 AccB Biotin carboxyl c 95.3 0.028 6.1E-07 50.9 5.1 37 132-168 69-105 (140)
90 cd06251 M14_ASTE_ASPA_like_1 A 95.2 0.073 1.6E-06 53.8 8.2 58 105-164 227-286 (287)
91 cd06250 M14_PaAOTO_like An unc 95.1 0.064 1.4E-06 56.0 7.8 59 104-164 296-358 (359)
92 cd06252 M14_ASTE_ASPA_like_2 A 95.0 0.09 2E-06 53.9 8.4 59 105-165 252-314 (316)
93 PF05896 NQRA: Na(+)-transloca 94.8 0.043 9.4E-07 54.5 5.1 42 107-151 40-83 (257)
94 TIGR02994 ectoine_eutE ectoine 94.5 0.12 2.6E-06 53.2 7.8 58 105-164 263-324 (325)
95 PRK07051 hypothetical protein; 94.5 0.08 1.7E-06 43.1 5.3 26 103-128 54-79 (80)
96 PRK06549 acetyl-CoA carboxylas 94.2 0.089 1.9E-06 47.1 5.4 37 132-168 60-96 (130)
97 PF13437 HlyD_3: HlyD family s 94.1 0.083 1.8E-06 44.5 4.7 33 136-168 2-34 (105)
98 PF00529 HlyD: HlyD family sec 93.8 0.058 1.2E-06 53.8 3.7 35 134-168 2-36 (305)
99 PF00364 Biotin_lipoyl: Biotin 93.7 0.098 2.1E-06 41.9 4.2 35 135-169 2-42 (74)
100 PRK05641 putative acetyl-CoA c 93.6 0.12 2.7E-06 47.5 5.3 36 133-168 84-119 (153)
101 PRK10476 multidrug resistance 93.6 0.12 2.7E-06 53.2 5.8 41 125-167 42-82 (346)
102 cd06254 M14_ASTE_ASPA_like_4 A 93.5 0.17 3.7E-06 51.1 6.6 56 104-161 230-287 (288)
103 TIGR01235 pyruv_carbox pyruvat 93.5 0.25 5.3E-06 58.9 8.8 81 88-169 1020-1110(1143)
104 TIGR00998 8a0101 efflux pump m 93.0 0.11 2.5E-06 52.8 4.5 36 133-168 42-77 (334)
105 TIGR02971 heterocyst_DevB ABC 93.0 0.15 3.2E-06 52.0 5.3 43 126-168 6-51 (327)
106 PF09891 DUF2118: Uncharacteri 92.8 0.15 3.2E-06 46.8 4.3 46 103-148 87-133 (150)
107 COG3608 Predicted deacylase [G 92.7 0.36 7.8E-06 49.7 7.5 60 104-165 263-325 (331)
108 PF07247 AATase: Alcohol acety 92.7 3.2 7E-05 44.5 15.2 176 269-460 252-480 (480)
109 PRK11556 multidrug efflux syst 92.4 0.26 5.5E-06 52.4 6.3 61 107-168 62-122 (415)
110 PRK09859 multidrug efflux syst 92.1 0.32 7E-06 50.9 6.5 56 111-167 40-95 (385)
111 TIGR01730 RND_mfp RND family e 92.0 0.26 5.6E-06 49.5 5.5 41 126-167 20-60 (322)
112 TIGR01936 nqrA NADH:ubiquinone 91.9 0.17 3.6E-06 54.4 4.2 44 104-148 37-80 (447)
113 PRK11578 macrolide transporter 91.7 0.37 8.1E-06 50.1 6.4 56 110-166 39-94 (370)
114 TIGR01000 bacteriocin_acc bact 91.6 0.33 7.1E-06 52.2 6.1 42 127-168 53-94 (457)
115 TIGR01843 type_I_hlyD type I s 91.6 0.29 6.3E-06 51.2 5.5 44 126-169 36-79 (423)
116 PF12700 HlyD_2: HlyD family s 91.6 0.19 4E-06 50.7 3.9 43 123-168 13-55 (328)
117 TIGR03794 NHPM_micro_HlyD NHPM 91.1 0.32 7E-06 51.6 5.4 37 133-169 58-94 (421)
118 PRK10559 p-hydroxybenzoic acid 91.1 0.25 5.4E-06 50.4 4.4 35 134-168 48-82 (310)
119 PRK15136 multidrug efflux syst 91.1 0.25 5.5E-06 52.0 4.4 36 133-168 61-96 (390)
120 PRK09578 periplasmic multidrug 90.9 0.44 9.5E-06 49.9 6.1 56 111-167 42-97 (385)
121 PF00529 HlyD: HlyD family sec 90.8 0.16 3.4E-06 50.6 2.5 32 103-134 8-39 (305)
122 PRK05352 Na(+)-translocating N 90.7 0.33 7.2E-06 52.2 5.0 43 105-148 39-81 (448)
123 PRK03598 putative efflux pump 90.7 0.32 7E-06 49.7 4.7 35 133-167 43-77 (331)
124 PRK05035 electron transport co 90.2 0.54 1.2E-05 53.3 6.3 43 105-148 46-88 (695)
125 COG1726 NqrA Na+-transporting 90.2 0.31 6.8E-06 50.3 4.0 41 110-153 43-85 (447)
126 TIGR02946 acyl_WS_DGAT acyltra 90.1 5.5 0.00012 42.2 13.6 165 268-462 231-441 (446)
127 PF13437 HlyD_3: HlyD family s 89.7 0.75 1.6E-05 38.6 5.4 27 103-129 6-32 (105)
128 PRK14042 pyruvate carboxylase 89.6 1.3 2.8E-05 49.4 8.5 36 134-169 526-561 (596)
129 PRK15030 multidrug efflux syst 89.2 0.74 1.6E-05 48.5 6.1 46 122-168 55-100 (397)
130 TIGR00531 BCCP acetyl-CoA carb 89.2 0.51 1.1E-05 43.6 4.3 26 103-128 131-156 (156)
131 PRK06302 acetyl-CoA carboxylas 89.1 0.56 1.2E-05 43.2 4.5 26 103-128 130-155 (155)
132 TIGR01945 rnfC electron transp 89.1 0.42 9E-06 51.2 4.2 43 105-148 40-82 (435)
133 PLN02226 2-oxoglutarate dehydr 88.9 0.56 1.2E-05 50.6 5.0 28 103-130 141-168 (463)
134 PF07831 PYNP_C: Pyrimidine nu 88.7 0.38 8.3E-06 38.9 2.7 24 107-130 33-56 (75)
135 PRK14875 acetoin dehydrogenase 88.3 0.75 1.6E-05 46.8 5.3 37 89-131 44-80 (371)
136 PLN02983 biotin carboxyl carri 88.3 0.7 1.5E-05 46.1 4.8 26 103-128 248-273 (274)
137 TIGR00999 8a0102 Membrane Fusi 88.2 0.75 1.6E-05 45.0 5.1 37 133-169 88-124 (265)
138 PRK09783 copper/silver efflux 88.1 0.98 2.1E-05 48.0 6.2 57 112-168 101-159 (409)
139 cd06255 M14_ASTE_ASPA_like_5 A 88.1 1.5 3.2E-05 44.5 7.2 43 105-147 239-283 (293)
140 PRK14844 bifunctional DNA-dire 87.0 1.4 3E-05 56.0 7.1 42 109-152 2423-2464(2836)
141 KOG3373 Glycine cleavage syste 86.3 0.51 1.1E-05 43.5 2.4 41 112-152 88-128 (172)
142 COG0845 AcrA Membrane-fusion p 85.9 1.9 4.2E-05 43.0 6.7 47 120-167 54-100 (372)
143 PF04952 AstE_AspA: Succinylgl 85.7 2.7 5.9E-05 42.0 7.6 60 105-166 228-291 (292)
144 TIGR01108 oadA oxaloacetate de 84.9 1.5 3.2E-05 48.9 5.6 37 134-170 518-554 (582)
145 TIGR00164 PS_decarb_rel phosph 84.6 1.9 4E-05 41.0 5.5 53 105-162 130-182 (189)
146 COG4072 Uncharacterized protei 84.5 2.5 5.5E-05 38.0 5.8 45 103-147 98-143 (161)
147 COG4656 RnfC Predicted NADH:ub 84.5 0.83 1.8E-05 49.5 3.3 42 105-148 42-83 (529)
148 cd06663 Biotinyl_lipoyl_domain 84.2 1.9 4.2E-05 33.7 4.6 33 89-127 41-73 (73)
149 PRK09282 pyruvate carboxylase 84.0 3.2 7E-05 46.3 7.8 37 133-169 522-558 (592)
150 PTZ00144 dihydrolipoamide succ 83.9 1.6 3.4E-05 46.7 5.0 29 103-131 94-122 (418)
151 PF02749 QRPTase_N: Quinolinat 83.8 0.97 2.1E-05 37.4 2.8 23 107-129 46-68 (88)
152 KOG0559 Dihydrolipoamide succi 83.8 2.6 5.6E-05 43.8 6.3 28 103-130 122-149 (457)
153 PRK05305 phosphatidylserine de 83.2 2.3 5E-05 40.9 5.5 52 105-161 150-201 (206)
154 PRK14040 oxaloacetate decarbox 83.1 1.7 3.7E-05 48.5 5.2 37 133-169 524-560 (593)
155 TIGR01000 bacteriocin_acc bact 83.1 1 2.2E-05 48.5 3.3 31 103-133 66-96 (457)
156 PRK12784 hypothetical protein; 83.0 1.7 3.6E-05 35.4 3.7 41 130-170 1-42 (84)
157 TIGR03794 NHPM_micro_HlyD NHPM 82.8 1.7 3.7E-05 46.1 4.9 34 134-167 254-287 (421)
158 PRK05704 dihydrolipoamide succ 81.5 2.3 5E-05 45.2 5.3 29 103-131 52-80 (407)
159 cd06849 lipoyl_domain Lipoyl d 80.4 3.2 6.9E-05 30.9 4.4 32 90-127 43-74 (74)
160 TIGR02712 urea_carbox urea car 80.3 2.3 5.1E-05 51.2 5.3 37 133-169 1132-1168(1201)
161 COG0508 AceF Pyruvate/2-oxoglu 80.2 2.4 5.2E-05 45.1 4.8 38 90-133 45-82 (404)
162 TIGR01347 sucB 2-oxoglutarate 79.9 2.9 6.2E-05 44.5 5.3 28 103-130 50-77 (403)
163 COG0845 AcrA Membrane-fusion p 79.6 1.6 3.4E-05 43.6 3.2 27 103-129 73-99 (372)
164 COG1566 EmrA Multidrug resista 78.8 2.4 5.2E-05 44.3 4.2 36 134-169 209-244 (352)
165 cd00210 PTS_IIA_glc PTS_IIA, P 78.8 1.7 3.6E-05 38.7 2.6 27 104-130 78-104 (124)
166 TIGR00830 PTBA PTS system, glu 77.8 1.8 3.8E-05 38.4 2.5 27 105-131 79-105 (121)
167 COG4770 Acetyl/propionyl-CoA c 77.7 2.9 6.3E-05 45.9 4.5 34 135-168 577-610 (645)
168 COG1566 EmrA Multidrug resista 77.6 3.3 7.2E-05 43.2 4.8 37 133-169 53-89 (352)
169 PRK09439 PTS system glucose-sp 77.0 3.9 8.6E-05 38.3 4.7 28 104-131 100-127 (169)
170 PRK12999 pyruvate carboxylase; 76.5 5.9 0.00013 47.7 7.1 37 133-169 1076-1112(1146)
171 PLN02528 2-oxoisovalerate dehy 76.4 4.2 9.2E-05 43.4 5.4 29 103-131 48-76 (416)
172 TIGR01995 PTS-II-ABC-beta PTS 75.7 3 6.4E-05 46.8 4.1 28 104-131 542-569 (610)
173 PF00358 PTS_EIIA_1: phosphoen 73.3 2.2 4.8E-05 38.4 1.9 28 104-131 82-109 (132)
174 KOG0369 Pyruvate carboxylase [ 72.3 8 0.00017 43.4 6.2 33 136-168 1109-1141(1176)
175 PF02666 PS_Dcarbxylase: Phosp 71.2 6.4 0.00014 37.6 4.7 59 103-163 143-202 (202)
176 PRK09439 PTS system glucose-sp 70.4 9.7 0.00021 35.7 5.6 21 146-166 105-125 (169)
177 COG2190 NagE Phosphotransferas 69.5 3.7 7.9E-05 38.0 2.5 27 105-131 86-112 (156)
178 cd01134 V_A-ATPase_A V/A-type 68.1 14 0.0003 38.8 6.6 56 111-168 54-112 (369)
179 TIGR01042 V-ATPase_V1_A V-type 68.1 12 0.00026 41.7 6.4 55 111-167 123-180 (591)
180 TIGR01349 PDHac_trf_mito pyruv 67.3 8.2 0.00018 41.5 5.0 29 103-131 49-78 (435)
181 PRK09294 acyltransferase PapA5 66.0 1.6E+02 0.0034 30.8 14.4 91 296-396 229-347 (416)
182 PRK09824 PTS system beta-gluco 65.8 8 0.00017 43.5 4.7 27 104-130 558-584 (627)
183 PRK10255 PTS system N-acetyl g 63.6 7.8 0.00017 43.7 4.1 28 104-131 578-605 (648)
184 PRK03934 phosphatidylserine de 62.0 16 0.00034 36.6 5.6 55 106-164 211-265 (265)
185 PRK11856 branched-chain alpha- 61.0 14 0.00031 39.2 5.3 29 103-131 52-80 (411)
186 cd06910 M14_ASTE_ASPA_like_7 A 59.1 13 0.00029 37.1 4.6 45 112-163 226-271 (272)
187 PRK11892 pyruvate dehydrogenas 58.5 11 0.00025 40.8 4.2 28 103-130 52-80 (464)
188 KOG0368 Acetyl-CoA carboxylase 58.3 25 0.00055 43.0 7.0 81 87-167 632-719 (2196)
189 COG0157 NadC Nicotinate-nucleo 57.8 9.8 0.00021 38.4 3.3 23 106-128 64-86 (280)
190 TIGR03309 matur_yqeB selenium- 57.3 16 0.00034 36.6 4.5 33 133-166 164-196 (256)
191 PRK03140 phosphatidylserine de 56.6 12 0.00027 37.3 3.8 51 112-163 207-257 (259)
192 PRK10255 PTS system N-acetyl g 56.0 24 0.00052 39.9 6.3 61 103-166 505-603 (648)
193 PF06898 YqfD: Putative stage 54.1 18 0.00039 38.2 4.7 55 104-165 167-228 (385)
194 KOG0557 Dihydrolipoamide acety 53.6 12 0.00026 40.2 3.2 30 140-169 51-80 (470)
195 COG1038 PycA Pyruvate carboxyl 53.5 27 0.00059 40.2 6.0 33 136-168 1082-1114(1149)
196 PRK14698 V-type ATP synthase s 52.7 28 0.0006 41.5 6.3 68 93-168 107-181 (1017)
197 cd06255 M14_ASTE_ASPA_like_5 A 52.0 24 0.00052 35.8 5.0 36 133-169 231-266 (293)
198 PRK08072 nicotinate-nucleotide 51.9 14 0.00031 37.3 3.4 21 108-128 66-86 (277)
199 PLN02744 dihydrolipoyllysine-r 51.0 19 0.00041 39.8 4.4 30 139-168 124-153 (539)
200 KOG0238 3-Methylcrotonyl-CoA c 51.0 13 0.00029 40.5 3.1 33 136-168 604-636 (670)
201 PF13375 RnfC_N: RnfC Barrel s 50.5 28 0.0006 29.8 4.5 49 117-166 14-63 (101)
202 cd06253 M14_ASTE_ASPA_like_3 A 50.3 21 0.00046 36.3 4.4 34 133-167 229-262 (298)
203 PF07831 PYNP_C: Pyrimidine nu 49.0 25 0.00053 28.4 3.7 30 139-170 30-59 (75)
204 COG3608 Predicted deacylase [G 48.9 30 0.00065 35.9 5.2 35 133-168 256-290 (331)
205 PLN02663 hydroxycinnamoyl-CoA: 48.8 23 0.0005 37.5 4.6 28 435-462 147-174 (431)
206 PF00668 Condensation: Condens 48.6 2.5E+02 0.0054 26.8 13.0 32 433-464 129-160 (301)
207 cd06250 M14_PaAOTO_like An unc 48.5 28 0.00061 36.4 5.1 35 134-169 290-324 (359)
208 cd01572 QPRTase Quinolinate ph 48.3 18 0.0004 36.3 3.5 24 105-128 57-80 (268)
209 cd06251 M14_ASTE_ASPA_like_1 A 48.1 33 0.00071 34.6 5.3 37 131-168 217-253 (287)
210 PRK09824 PTS system beta-gluco 47.9 40 0.00086 38.1 6.4 60 103-166 485-583 (627)
211 PRK06543 nicotinate-nucleotide 47.7 18 0.00039 36.6 3.4 22 107-128 66-87 (281)
212 cd06254 M14_ASTE_ASPA_like_4 A 46.9 28 0.0006 35.1 4.6 37 131-168 221-257 (288)
213 PRK06096 molybdenum transport 46.8 19 0.00041 36.6 3.4 22 107-128 62-83 (284)
214 PF01551 Peptidase_M23: Peptid 46.8 17 0.00037 29.9 2.6 25 105-129 50-74 (96)
215 PF01551 Peptidase_M23: Peptid 46.7 63 0.0014 26.4 6.0 57 103-168 20-76 (96)
216 PRK05742 nicotinate-nucleotide 46.7 19 0.00042 36.4 3.4 21 108-128 68-88 (277)
217 TIGR02643 T_phosphoryl thymidi 46.3 16 0.00035 39.3 2.8 18 148-165 385-402 (437)
218 cd01573 modD_like ModD; Quinol 45.6 21 0.00045 36.0 3.4 22 107-128 57-78 (272)
219 cd06252 M14_ASTE_ASPA_like_2 A 45.4 41 0.00089 34.4 5.6 37 131-168 242-278 (316)
220 PLN00140 alcohol acetyltransfe 45.3 22 0.00048 38.0 3.8 28 435-462 150-177 (444)
221 CHL00117 rpoC2 RNA polymerase 45.3 61 0.0013 39.8 7.7 119 40-168 278-427 (1364)
222 PRK07428 nicotinate-nucleotide 45.1 21 0.00046 36.3 3.4 22 107-128 73-94 (288)
223 PRK09016 quinolinate phosphori 45.0 21 0.00046 36.4 3.4 14 352-365 234-247 (296)
224 PRK05820 deoA thymidine phosph 44.8 17 0.00038 39.1 2.9 21 108-128 383-403 (440)
225 TIGR02645 ARCH_P_rylase putati 44.7 42 0.00091 36.7 5.7 44 126-169 406-473 (493)
226 TIGR02994 ectoine_eutE ectoine 44.6 31 0.00067 35.6 4.6 34 133-167 255-288 (325)
227 PF05896 NQRA: Na(+)-transloca 44.4 17 0.00036 36.4 2.5 30 135-164 31-60 (257)
228 PF02458 Transferase: Transfer 44.2 31 0.00068 36.1 4.7 36 422-463 142-177 (432)
229 cd01568 QPRTase_NadC Quinolina 44.0 22 0.00048 35.6 3.4 24 105-128 56-79 (269)
230 PRK06978 nicotinate-nucleotide 44.0 23 0.00049 36.2 3.4 21 108-128 84-104 (294)
231 TIGR00999 8a0102 Membrane Fusi 44.0 52 0.0011 31.9 6.0 32 91-128 89-120 (265)
232 PF02749 QRPTase_N: Quinolinat 44.0 49 0.0011 27.2 4.9 23 145-167 47-69 (88)
233 TIGR00163 PS_decarb phosphatid 43.8 22 0.00047 35.0 3.2 48 115-163 189-236 (238)
234 PRK05848 nicotinate-nucleotide 43.7 23 0.0005 35.7 3.4 21 108-128 60-80 (273)
235 PRK04192 V-type ATP synthase s 43.6 54 0.0012 36.7 6.5 57 111-169 123-182 (586)
236 PLN02716 nicotinate-nucleotide 42.9 24 0.00052 36.3 3.4 23 106-128 78-100 (308)
237 PRK02597 rpoC2 DNA-directed RN 42.8 72 0.0016 39.0 7.7 36 110-145 405-447 (1331)
238 PRK07896 nicotinate-nucleotide 42.7 24 0.00053 35.9 3.4 21 108-128 78-98 (289)
239 TIGR02645 ARCH_P_rylase putati 42.4 21 0.00046 39.0 3.0 32 98-129 439-470 (493)
240 PRK06106 nicotinate-nucleotide 42.4 25 0.00054 35.7 3.4 23 106-128 70-92 (281)
241 TIGR02876 spore_yqfD sporulati 42.3 46 0.001 35.2 5.5 56 104-165 163-225 (382)
242 PF01333 Apocytochr_F_C: Apocy 42.2 18 0.00038 31.8 1.9 53 103-162 9-61 (118)
243 PRK06078 pyrimidine-nucleoside 41.2 21 0.00046 38.4 2.8 26 105-130 375-400 (434)
244 TIGR00078 nadC nicotinate-nucl 40.5 28 0.0006 34.9 3.4 21 108-128 56-76 (265)
245 TIGR01043 ATP_syn_A_arch ATP s 40.5 57 0.0012 36.4 6.0 56 111-168 120-178 (578)
246 PRK08385 nicotinate-nucleotide 40.4 28 0.0006 35.3 3.4 21 108-128 60-80 (278)
247 TIGR02644 Y_phosphoryl pyrimid 40.1 24 0.00051 37.7 3.0 28 102-129 370-397 (405)
248 PRK04350 thymidine phosphoryla 39.8 24 0.00053 38.5 3.0 31 98-128 431-461 (490)
249 TIGR01334 modD putative molybd 39.6 29 0.00063 35.1 3.4 22 107-128 61-82 (277)
250 TIGR03327 AMP_phos AMP phospho 38.4 25 0.00055 38.4 2.9 31 98-128 440-470 (500)
251 COG1155 NtpA Archaeal/vacuolar 38.3 75 0.0016 35.1 6.3 57 112-169 122-180 (588)
252 cd00210 PTS_IIA_glc PTS_IIA, P 37.6 46 0.001 29.6 3.9 23 144-166 81-103 (124)
253 PLN02481 Omega-hydroxypalmitat 36.2 41 0.0009 35.8 4.1 28 435-462 160-187 (436)
254 PF09891 DUF2118: Uncharacteri 36.0 37 0.00079 31.3 3.1 43 117-170 75-117 (150)
255 TIGR00830 PTBA PTS system, glu 35.8 51 0.0011 29.2 3.9 39 122-166 65-103 (121)
256 TIGR00164 PS_decarb_rel phosph 35.6 1.4E+02 0.0031 28.2 7.2 64 103-167 79-154 (189)
257 PRK04350 thymidine phosphoryla 35.5 72 0.0016 34.9 5.8 43 127-169 399-465 (490)
258 PRK00044 psd phosphatidylserin 35.2 37 0.0008 34.4 3.4 49 115-165 237-286 (288)
259 PRK10871 nlpD lipoprotein NlpD 34.5 23 0.00049 36.6 1.7 19 110-128 272-290 (319)
260 PRK00566 DNA-directed RNA poly 33.9 64 0.0014 38.9 5.4 113 45-163 848-986 (1156)
261 TIGR02386 rpoC_TIGR DNA-direct 33.8 69 0.0015 38.6 5.7 114 45-163 840-984 (1140)
262 COG4072 Uncharacterized protei 32.9 80 0.0017 28.6 4.6 32 138-169 96-127 (161)
263 TIGR03327 AMP_phos AMP phospho 32.6 82 0.0018 34.6 5.6 42 128-169 409-474 (500)
264 COG2190 NagE Phosphotransferas 32.0 58 0.0013 30.2 3.8 25 142-166 86-110 (156)
265 PRK09603 bifunctional DNA-dire 31.7 70 0.0015 41.9 5.5 52 110-161 2616-2720(2890)
266 CHL00117 rpoC2 RNA polymerase 30.4 60 0.0013 39.9 4.5 36 109-144 405-448 (1364)
267 PLN03157 spermidine hydroxycin 29.8 55 0.0012 34.9 3.8 28 435-462 148-175 (447)
268 TIGR02644 Y_phosphoryl pyrimid 29.8 98 0.0021 33.1 5.5 42 127-168 327-399 (405)
269 PF00358 PTS_EIIA_1: phosphoen 29.4 38 0.00083 30.4 2.1 22 145-166 86-107 (132)
270 PRK06559 nicotinate-nucleotide 29.1 53 0.0011 33.5 3.3 23 106-128 71-95 (290)
271 PRK10871 nlpD lipoprotein NlpD 29.0 1.6E+02 0.0035 30.5 6.8 25 144-168 269-293 (319)
272 PRK05820 deoA thymidine phosph 28.6 1E+02 0.0022 33.3 5.5 41 129-169 336-407 (440)
273 PRK08662 nicotinate phosphorib 27.8 54 0.0012 34.2 3.2 23 105-129 70-92 (343)
274 PF06898 YqfD: Putative stage 27.8 66 0.0014 34.0 3.9 23 104-126 197-226 (385)
275 PRK02597 rpoC2 DNA-directed RN 27.7 3.3E+02 0.0071 33.7 9.9 119 41-167 275-425 (1331)
276 PF07687 M20_dimer: Peptidase 27.1 55 0.0012 27.0 2.6 28 435-462 79-106 (111)
277 PRK05305 phosphatidylserine de 25.9 2.1E+02 0.0044 27.5 6.6 64 103-167 98-174 (206)
278 PTZ00403 phosphatidylserine de 25.7 79 0.0017 33.2 3.9 59 105-166 281-340 (353)
279 cd06848 GCS_H Glycine cleavage 25.6 84 0.0018 26.2 3.4 31 139-169 26-57 (96)
280 TIGR02643 T_phosphoryl thymidi 24.5 1.4E+02 0.003 32.3 5.5 21 129-149 335-355 (437)
281 PRK02693 apocytochrome f; Revi 24.5 1.5E+02 0.0032 30.2 5.3 61 89-151 150-214 (312)
282 PRK00965 tetrahydromethanopter 24.1 87 0.0019 26.7 3.2 47 333-379 9-57 (96)
283 KOG1668 Elongation factor 1 be 23.4 43 0.00093 32.9 1.4 27 109-135 181-207 (231)
284 PRK07188 nicotinate phosphorib 23.2 83 0.0018 33.0 3.5 20 148-167 76-95 (352)
285 cd00516 PRTase_typeII Phosphor 22.2 85 0.0018 31.2 3.3 24 105-128 49-72 (281)
286 CHL00037 petA cytochrome f 21.9 1.6E+02 0.0034 30.2 5.0 59 90-150 158-220 (320)
287 PF01333 Apocytochr_F_C: Apocy 21.8 30 0.00065 30.4 -0.0 16 110-125 46-61 (118)
288 PF05440 MtrB: Tetrahydrometha 21.6 1E+02 0.0023 26.3 3.2 48 333-380 8-57 (97)
289 TIGR02876 spore_yqfD sporulati 21.5 1.1E+02 0.0023 32.5 4.0 24 103-126 193-223 (382)
290 PRK06078 pyrimidine-nucleoside 20.6 1.7E+02 0.0037 31.6 5.3 20 147-166 380-399 (434)
291 PF02666 PS_Dcarbxylase: Phosp 20.4 55 0.0012 31.1 1.5 32 88-126 171-202 (202)
292 TIGR01936 nqrA NADH:ubiquinone 20.4 71 0.0015 34.6 2.4 32 135-166 31-62 (447)
293 cd01571 NAPRTase_B Nicotinate 20.2 1E+02 0.0022 31.4 3.5 17 112-128 58-74 (302)
294 COG0213 DeoA Thymidine phospho 20.0 86 0.0019 33.6 2.9 27 141-169 377-403 (435)
295 PF07247 AATase: Alcohol acety 20.0 1.1E+02 0.0023 32.8 3.7 32 432-463 140-171 (480)
No 1
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=1.4e-94 Score=754.78 Aligned_cols=388 Identities=76% Similarity=1.160 Sum_probs=323.9
Q ss_pred CccccccccccCCCCceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCC
Q 012142 74 SFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (470)
Q Consensus 74 ~~~~~~~r~~~~~~~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~ 153 (470)
++++.|.|.|....+..++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||
T Consensus 75 ~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd 154 (463)
T PLN02226 75 STLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD 154 (463)
T ss_pred hhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCC
Confidence 45567788888877766999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCeEEEEEeCCCccccccccccccCCCCCCCCCCCCCCCCCCcccCcccccCC-CCCCCCCCCCCCCCCCCCCCCC
Q 012142 154 TVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT-PSEPPPTAKKPTSPPSKPMASE 232 (470)
Q Consensus 154 ~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~asP~~r~~~-~s~~~~~~~~~~~~~~~~~~~~ 232 (470)
.|++|++|++|++.+++.+........+....+.+..+...+....+.++|++++.. ++++. .+. .....
T Consensus 155 ~V~vG~~L~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~asp~~r~~~~~~~~~----~~~-----~~~~~ 225 (463)
T PLN02226 155 TVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPP----PPK-----QSAKE 225 (463)
T ss_pred EecCCCEEEEeccCCccccccCccCCCCCCCCCCCCCccccccccCCCcchhhccccCCCCCC----CCc-----ccccC
Confidence 999999999997543321110000000000000000000001112345666665431 11100 000 00000
Q ss_pred CCCCCCCCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhh
Q 012142 233 PQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQ 312 (470)
Q Consensus 233 ~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~ 312 (470)
+..+....++.+|++++||.||++|++||+++||||++.|+|+|+|+++|+++|+.+.++.|+|+||++||+||+++||+
T Consensus 226 ~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~ 305 (463)
T PLN02226 226 PQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQ 305 (463)
T ss_pred cccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHH
Confidence 11101112456899999999999999999999999999999999999999999987666679999999999999999999
Q ss_pred hCCccceEEeCCeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCC
Q 012142 313 HQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGG 392 (470)
Q Consensus 313 ~~P~lNa~~~~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG 392 (470)
+||++|++|+++.|+++++|||||||++++||+||||||+|+|||.||++++++|++++|+|+|+++||+||||||||+|
T Consensus 306 ~~P~lNa~~~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG 385 (463)
T PLN02226 306 HQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGG 385 (463)
T ss_pred hCCHhheEEcCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCC
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012142 393 VYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 470 (470)
Q Consensus 393 ~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 470 (470)
+||+++|+|||||||+||||+|+++++|+++||+++++++|+||||||||||||++||+||++|+++||||+.||+++
T Consensus 386 ~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl~~ 463 (463)
T PLN02226 386 VYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 463 (463)
T ss_pred cccccceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=6.5e-89 Score=710.27 Aligned_cols=382 Identities=54% Similarity=0.848 Sum_probs=318.5
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+.++
T Consensus 1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred Cccccc-cccccccCCCCCCCCCCCCCCCCCCcccCcccccC-----------CCCCCCCCCCC-------CCC--CCCC
Q 012142 169 EGVAQA-ASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDK-----------TPSEPPPTAKK-------PTS--PPSK 227 (470)
Q Consensus 169 ~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~asP~~r~~-----------~~s~~~~~~~~-------~~~--~~~~ 227 (470)
++.... .+....+..+.+.+.............++|++|++ .++++.+.... ... +++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 160 (407)
T PRK05704 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA 160 (407)
T ss_pred cccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence 322110 00000000000000000000111124579999864 34555433211 000 0000
Q ss_pred -CCCC-CC-CC-CCCCCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHH
Q 012142 228 -PMAS-EP-QL-PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGF 303 (470)
Q Consensus 228 -~~~~-~~-~~-~~~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~l 303 (470)
+... .. .. .....++.+||+++||+|+++|++||+++||||++.|+|+++|+++|+++|+.+.++.|+|+|+++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~l 240 (407)
T PRK05704 161 PAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFF 240 (407)
T ss_pred CCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHH
Confidence 0000 00 00 01112456899999999999999999999999999999999999999999987766679999999999
Q ss_pred HHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCC
Q 012142 304 VKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAG 383 (470)
Q Consensus 304 iKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~g 383 (470)
+||+++||++||.+|++|+++++++++++||||||++++||+||||||+|+|||.||++++++|++++|+|+|+++||+|
T Consensus 241 ikA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar~g~L~~~d~~g 320 (407)
T PRK05704 241 VKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTG 320 (407)
T ss_pred HHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCChHHcCC
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcCh
Q 012142 384 GTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDP 463 (470)
Q Consensus 384 gTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P 463 (470)
|||||||+|+||+.+|+|||||||+||||+|+++++|++.||+++++++|+||||||||||||++||+||++|+++||||
T Consensus 321 gTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~le~p 400 (407)
T PRK05704 321 GTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDP 400 (407)
T ss_pred ceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECCEEEEEEEEEEEEEechhhhCcHHHHHHHHHHHHHhhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC
Q 012142 464 RRLLLDI 470 (470)
Q Consensus 464 ~~lll~~ 470 (470)
+.||++|
T Consensus 401 ~~ll~~~ 407 (407)
T PRK05704 401 ERLLLDL 407 (407)
T ss_pred HHHhhcC
Confidence 9999876
No 3
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=8.1e-89 Score=706.90 Aligned_cols=371 Identities=56% Similarity=0.891 Sum_probs=309.4
Q ss_pred CCceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 87 ~~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
+..+.+|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++||.|++|++|+.|+.
T Consensus 41 ~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~ 120 (418)
T PTZ00144 41 YFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDT 120 (418)
T ss_pred cccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCccccccccccccCCCC-CCCCCCCCCC------CCCCcccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012142 167 SGEGVAQAASAEKAAAQPP-PAEEKPSAEK------QTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKD 239 (470)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~------~~~~~~asP~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
.+++.... .....+..+. +.+....... ......++|++|+... .+.+ +..+.+......
T Consensus 121 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~a~p~vr~~~~-----------~~~~-~~~~~~~~~~~~ 187 (418)
T PTZ00144 121 GGAPPAAA-PAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEP-----------APAA-KPPPTPVARADP 187 (418)
T ss_pred CCcccccc-ccccCCCCCccCCCCCCCCCCCccccccccccCCchhhhcccc-----------CCCC-CCCCCCccccCC
Confidence 54321100 0000000000 0000000000 0001123333332100 0000 000000000011
Q ss_pred CcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccce
Q 012142 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (470)
Q Consensus 240 ~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa 319 (470)
.++.+|++++||+||++|++||+++||||++.|+|+|+|+++|+++++.+.++.|+|+|+++||+||+++||++||.+|+
T Consensus 188 ~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na 267 (418)
T PTZ00144 188 RETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNA 267 (418)
T ss_pred CceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhe
Confidence 24568999999999999999999999999999999999999999999876666699999999999999999999999999
Q ss_pred EEeCCeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcce
Q 012142 320 VIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLS 399 (470)
Q Consensus 320 ~~~~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~ 399 (470)
+|+++++++++++||||||++++||+||||||+|+||+.||++++++|++++|+|+|+++||+||||||||+|++|+++|
T Consensus 268 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~ 347 (418)
T PTZ00144 268 YIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMG 347 (418)
T ss_pred EEcCCEEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCccee
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012142 400 TPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 470 (470)
Q Consensus 400 ~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 470 (470)
+|||||||+||||+|+++++|++.+|+++++++|+||||||||||||++||+||++|+++||||+.||+++
T Consensus 348 tpIInpPq~aILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll~~ 418 (418)
T PTZ00144 348 TPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLLDL 418 (418)
T ss_pred eeeecCCceEEEecccceeEeEEECCEEEEEeEEEEEEecchhhhChHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 4
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=3.8e-88 Score=703.25 Aligned_cols=379 Identities=53% Similarity=0.848 Sum_probs=315.9
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCCc
Q 012142 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~~ 170 (470)
++|+||+||++|++|+|++|+|++||.|++||+|++|||||++++|+||++|+|.++++++|+.|++|++|++|+.+++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred cccccccccccCCCCC--CCCCCCCCCCCCCcccCcccccC-----------CCCCCCCCCCC-------CCC--CCCCC
Q 012142 171 VAQAASAEKAAAQPPP--AEEKPSAEKQTPESEAAPAVKDK-----------TPSEPPPTAKK-------PTS--PPSKP 228 (470)
Q Consensus 171 ~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~asP~~r~~-----------~~s~~~~~~~~-------~~~--~~~~~ 228 (470)
.+ ..+....+....+ .+.............++|++|++ .++++.+...+ ... .+..+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~ 159 (403)
T TIGR01347 81 TA-APPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPA 159 (403)
T ss_pred cc-cccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCCC
Confidence 11 0000000000000 00000000111234578999864 34554433211 000 00000
Q ss_pred CCCCCCCC--CCCCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHH
Q 012142 229 MASEPQLP--PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKA 306 (470)
Q Consensus 229 ~~~~~~~~--~~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA 306 (470)
.+.....+ ....++.+||+++||+||++|++||+++||||++.|+|+++|+++|+++++.+.++.|+|+||++||+||
T Consensus 160 ~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA 239 (403)
T TIGR01347 160 PAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKA 239 (403)
T ss_pred CCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHH
Confidence 00000000 0112456899999999999999999999999999999999999999999987666679999999999999
Q ss_pred HHHHhhhCCccceEEeCCeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccE
Q 012142 307 AVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTF 386 (470)
Q Consensus 307 ~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTf 386 (470)
+++||++||.+|++|+++++++++++||||||++++||+||||||+|+||+.||++++++|++++|+|+|+++||+||||
T Consensus 240 ~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar~gkL~~~d~~ggTf 319 (403)
T TIGR01347 240 VVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTF 319 (403)
T ss_pred HHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhh
Q 012142 387 TISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 466 (470)
Q Consensus 387 tISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~l 466 (470)
||||+|+||+.+|+|||||||+||||+|+++++|++.||+++++++|+||||||||||||++||+||++|+++||||+.|
T Consensus 320 TISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~l~~~le~p~~l 399 (403)
T TIGR01347 320 TITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPRRL 399 (403)
T ss_pred EEecCCcCcccceeccccCCceEEEecccceEEEEEECCeEEEEEEEEEEEEecchhhChHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC
Q 012142 467 LLDI 470 (470)
Q Consensus 467 ll~~ 470 (470)
|++|
T Consensus 400 l~~~ 403 (403)
T TIGR01347 400 LLDL 403 (403)
T ss_pred HhcC
Confidence 9886
No 5
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=4.6e-86 Score=703.33 Aligned_cols=391 Identities=29% Similarity=0.429 Sum_probs=319.3
Q ss_pred cccccccCCCC--ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCC-e
Q 012142 78 SRSRLFSSDSG--DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-T 154 (470)
Q Consensus 78 ~~~r~~~~~~~--~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~-~ 154 (470)
.+.|.|++... .+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++++|+++|+|.+|++++|+ .
T Consensus 98 ~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~ 177 (539)
T PLN02744 98 QSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE 177 (539)
T ss_pred cccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc
Confidence 34677886544 46999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred eCCCCeEEEEEeCCCcccc-----c----cccccc--cCC---C-----CCCCCCC----CCCC---CCCCcccCccccc
Q 012142 155 VEPGAKIAVISKSGEGVAQ-----A----ASAEKA--AAQ---P-----PPAEEKP----SAEK---QTPESEAAPAVKD 208 (470)
Q Consensus 155 v~~G~~l~~i~~~~~~~~~-----~----~~~~~~--~~~---~-----~~~~~~~----~~e~---~~~~~~asP~~r~ 208 (470)
|++|++|+++.+++++... . .+.... +.+ . .+.+... ..+. ....+.++|++|+
T Consensus 178 v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRr 257 (539)
T PLN02744 178 IKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARK 257 (539)
T ss_pred cCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHH
Confidence 9999999998543332100 0 000000 000 0 0000000 0000 0112457899886
Q ss_pred C-----------CCCCCCCCCCCC-------CCCCCCCCC-CCCCCCCCCCcceeechhHHHHHHHHHHhcccccceEEE
Q 012142 209 K-----------TPSEPPPTAKKP-------TSPPSKPMA-SEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTT 269 (470)
Q Consensus 209 ~-----------~~s~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~ 269 (470)
+ .++++.+...+. ......+.+ +.+...+...++++|++++||.||++|++||+++||||+
T Consensus 258 LAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~ 337 (539)
T PLN02744 258 LAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYL 337 (539)
T ss_pred HHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeEEE
Confidence 4 345554432211 000000000 000001111245689999999999999999999999999
Q ss_pred EeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEecCCceEEeeE
Q 012142 270 FNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVI 349 (470)
Q Consensus 270 ~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t~~GL~vPvI 349 (470)
+.|+|+++|+++|+++|+.+.+..|+|+||++||+||+++||++||.+|++|+++.|+++++|||||||++++||+||||
T Consensus 338 ~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vPVI 417 (539)
T PLN02744 338 TVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVPVV 417 (539)
T ss_pred EEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEECcC
Confidence 99999999999999999765555689999999999999999999999999999989999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCC-CCCCcceeeeeCCCCeEEEEecceeeeEEE--eCCe
Q 012142 350 RNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGG-VYGSLLSTPIINPPQSAILGMHSIVNRPMV--VGGN 426 (470)
Q Consensus 350 ~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG-~~G~~~~~pii~ppq~aIL~vG~i~~~pv~--~~g~ 426 (470)
||+|+|||.||++++++|+++||+|+|+++||+||||||||+| +||+.+|+|||||||+||||+|+++++|++ .+|+
T Consensus 418 r~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~ 497 (539)
T PLN02744 418 KDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQ 497 (539)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCe
Confidence 9999999999999999999999999999999999999999998 899999999999999999999999999998 4899
Q ss_pred EEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 427 VVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 427 i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
++++++|+||||||||||||++||+||++|+++||||+.|||
T Consensus 498 i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 498 YNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred EEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 999999999999999999999999999999999999999875
No 6
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.1e-86 Score=655.70 Aligned_cols=378 Identities=63% Similarity=0.996 Sum_probs=316.4
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
..+++..|.++|+++||+|.+|++++||.|++++.||+|||||.+++|.||.+|+|.+++|++||+|.+|+.|+.|....
T Consensus 71 s~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ga 150 (457)
T KOG0559|consen 71 SVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGA 150 (457)
T ss_pred ceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred Ccccc--ccccccccCCCCCCCCCCCCCCCCCCcccCccccc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CC
Q 012142 169 EGVAQ--AASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKD-KTPSEPPPTAKKPTSPPSKPMASEPQLPP------KD 239 (470)
Q Consensus 169 ~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~~~~asP~~r~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 239 (470)
..... ..|+..++.++...+++++...+.++...+|..+. ..++.+...+...+ .++..++.+++ ..
T Consensus 151 Apa~~~~~apa~~~pk~~~a~~a~p~~~s~~~p~~~apv~e~p~~p~~~~P~~~~a~----k~~v~~~~~~p~~~~~~~R 226 (457)
T KOG0559|consen 151 APAKGGASAPAKAEPKTAPAAAAPPKPSSKPPPKEAAPVAESPPAPSSPEPVPASAK----KPSVAQPKPPPSEGATPSR 226 (457)
T ss_pred CCccccccCCCccCCCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCcccc----CccccCCCCCcccccCCCc
Confidence 32221 22222222111111100011111111222222110 00000000000000 01111122222 23
Q ss_pred CcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccce
Q 012142 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (470)
Q Consensus 240 ~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa 319 (470)
.+.+++|++||+.||+||++|+++.+.+|.|.||||++|+++|++|++.|.+++|+|+.||.+|+||++.||++.|.+|+
T Consensus 227 ~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNa 306 (457)
T KOG0559|consen 227 SERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNA 306 (457)
T ss_pred chhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcce
Q 012142 320 VIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLS 399 (470)
Q Consensus 320 ~~~~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~ 399 (470)
.+||++|+|++++||+|||.|++||+||||||++.+++.||..+|+.|..|||+|+|+.+||.||||||||-|.||..++
T Consensus 307 vIdg~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~g 386 (457)
T KOG0559|consen 307 VIDGDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYG 386 (457)
T ss_pred eecCCeeEEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012142 400 TPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 470 (470)
Q Consensus 400 ~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 470 (470)
||||||||+||||++.|.+||++++|++++|+||++.||||||+|||.+|.-||+.+|+++|||..|||+|
T Consensus 387 TPIINpPQsAILGmHgI~eRPv~v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr~iK~~VEDP~~mll~l 457 (457)
T KOG0559|consen 387 TPIINPPQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLLDL 457 (457)
T ss_pred CcccCCchhhhhhcccccccceeeCCEeeeccceEEEeeccccccccHHHHHHHHHHHHHhhCHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
No 7
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=2.5e-84 Score=703.88 Aligned_cols=379 Identities=39% Similarity=0.619 Sum_probs=308.9
Q ss_pred CceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 88 ~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
++.++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|++|+.+
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 212 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDA 212 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCcccc-----ccc-c------ccccC-CCC----CCC---C----CC---C--CCC---CCCCcccCcccccC------
Q 012142 168 GEGVAQ-----AAS-A------EKAAA-QPP----PAE---E----KP---S--AEK---QTPESEAAPAVKDK------ 209 (470)
Q Consensus 168 ~~~~~~-----~~~-~------~~~~~-~~~----~~~---~----~~---~--~e~---~~~~~~asP~~r~~------ 209 (470)
+++... ... . ...+. ... ..+ . .. . ... ....+.++|++|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gv 292 (590)
T TIGR02927 213 GAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGI 292 (590)
T ss_pred CCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCC
Confidence 432110 000 0 00000 000 000 0 00 0 000 01134678999864
Q ss_pred -----CCCCCCCCCCC-------CC-----CCCCC------CCCC-CCCC-C-C---CCCcceeechhHHHHHHHHHHhc
Q 012142 210 -----TPSEPPPTAKK-------PT-----SPPSK------PMAS-EPQL-P-P---KDRERRVPMTRLRKRVATRLKDS 260 (470)
Q Consensus 210 -----~~s~~~~~~~~-------~~-----~~~~~------~~~~-~~~~-~-~---~~~~~~vpls~~rk~ia~~m~~S 260 (470)
.++++.+...+ .. ..+.. +.+. .+.. + + ...++.+||+++||.|+++|++|
T Consensus 293 dl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S 372 (590)
T TIGR02927 293 DLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREA 372 (590)
T ss_pred CHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHH
Confidence 34554433210 00 00000 0000 0000 0 0 01245789999999999999999
Q ss_pred ccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeC--CeEEEeCCccEEEEE
Q 012142 261 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAV 338 (470)
Q Consensus 261 ~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~--~~i~~~~~inIgiAv 338 (470)
|+++||||++.|+|+|+|+++|+++|+.+.++.|+|+||++||+||+++||++||.+|++|++ +.|+++++|||||||
T Consensus 373 ~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv 452 (590)
T TIGR02927 373 LQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAV 452 (590)
T ss_pred hccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEE
Confidence 999999999999999999999999998665556899999999999999999999999999975 479999999999999
Q ss_pred ecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceee
Q 012142 339 GTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVN 418 (470)
Q Consensus 339 ~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~ 418 (470)
++++||+||||||+|+|||.||++++++|+++||+|+|+++||+||||||||+|+||+++|+|||||||+||||+|++++
T Consensus 453 ~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~ 532 (590)
T TIGR02927 453 DTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVK 532 (590)
T ss_pred ECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeC---C--eEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhh
Q 012142 419 RPMVVG---G--NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 466 (470)
Q Consensus 419 ~pv~~~---g--~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~l 466 (470)
+|++++ | .++++++|+||||||||||||++||+||++||++||||..+
T Consensus 533 ~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~~ 585 (590)
T TIGR02927 533 RPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAFE 585 (590)
T ss_pred EEEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCcccc
Confidence 999852 3 49999999999999999999999999999999999999654
No 8
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.1e-83 Score=673.08 Aligned_cols=376 Identities=23% Similarity=0.418 Sum_probs=307.9
Q ss_pred EEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCCccc
Q 012142 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVA 172 (470)
Q Consensus 93 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~~~~ 172 (470)
|+||+||++|+||+|++|+|++||.|++||+|+++||||+.++++|+++|+|.++++++|+.|++|++|+.|+.++++..
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999975543221
Q ss_pred cccccccccC-CCCCCCCC-CCCCCCCCCcccCcccccC-----------CCCCCCCCCC---------CCC--C-CCCC
Q 012142 173 QAASAEKAAA-QPPPAEEK-PSAEKQTPESEAAPAVKDK-----------TPSEPPPTAK---------KPT--S-PPSK 227 (470)
Q Consensus 173 ~~~~~~~~~~-~~~~~~~~-~~~e~~~~~~~asP~~r~~-----------~~s~~~~~~~---------~~~--~-~~~~ 227 (470)
.....+.... .+.+.+.. ...........++|++|++ .++++.+... ... . +.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~ 160 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSA 160 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhccccccccccc
Confidence 1000000000 00000000 0000111124578988864 3444433211 000 0 0000
Q ss_pred C---CCCC------CCCCCCC--CcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcc
Q 012142 228 P---MASE------PQLPPKD--RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVK 296 (470)
Q Consensus 228 ~---~~~~------~~~~~~~--~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~k 296 (470)
+ .+.. +..+... .++++||+++||+|+++|++|+ ++||||++.|+|+++|+++|+++++.. ++.|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~-~~~g~k 238 (416)
T PLN02528 161 EEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQENN-TDPTVK 238 (416)
T ss_pred ccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHhhhh-hhcCCc
Confidence 0 0000 0000001 2456899999999999999997 999999999999999999999998653 345899
Q ss_pred cchHHHHHHHHHHHhhhCCccceEEeCC--eEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcC
Q 012142 297 LGLMSGFVKAAVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG 374 (470)
Q Consensus 297 ls~~~~liKA~~~AL~~~P~lNa~~~~~--~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g 374 (470)
+||++||+||+++||++||.+|++|+++ .+++++++||||||++++||+||||||+|+||+.||++++++|++++|+|
T Consensus 239 ls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~g 318 (416)
T PLN02528 239 HTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAEN 318 (416)
T ss_pred ccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999864 69999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEEe-CCeEEEEcEEEEEEEecccccChHHHHHHH
Q 012142 375 SISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFL 453 (470)
Q Consensus 375 ~L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~-~g~i~~~~~m~ltls~DHRviDGa~aa~Fl 453 (470)
+|+++||+||||||||+|+||+.+|+|||||||+||||+|+++++|++. +|+++++++|+||||||||||||++||+||
T Consensus 319 kL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl 398 (416)
T PLN02528 319 KLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFC 398 (416)
T ss_pred CCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 589999999999999999999999999999
Q ss_pred HHHHHHhcChhhhhccC
Q 012142 454 RRIKDIVEDPRRLLLDI 470 (470)
Q Consensus 454 ~~lk~~LE~P~~lll~~ 470 (470)
++|+++||||+.|||++
T Consensus 399 ~~lk~~le~P~~lll~~ 415 (416)
T PLN02528 399 NEWKSYVEKPELLMLHM 415 (416)
T ss_pred HHHHHHHhCHHHHHhcc
Confidence 99999999999999875
No 9
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1e-83 Score=670.73 Aligned_cols=380 Identities=47% Similarity=0.767 Sum_probs=318.9
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|.++|+||+||++|+||+|++|+||+||+|++||+|+||||||+++||+||++|+|.+|++++||+|++|++|++|++++
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CccccccccccccCCCCCCCCCCC-CCCCCCCcccCcccccCC-----------CCCCCCCCCCCC---------CCCCC
Q 012142 169 EGVAQAASAEKAAAQPPPAEEKPS-AEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPT---------SPPSK 227 (470)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~asP~~r~~~-----------~s~~~~~~~~~~---------~~~~~ 227 (470)
++..........+....++.++.. .+.+.....++|++|+++ ++++.+...... .+...
T Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~~~~~ 160 (404)
T COG0508 81 ADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAA 160 (404)
T ss_pred CcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccccccccc
Confidence 642111100000000011100000 011114457788888642 233332211100 00000
Q ss_pred CCCCCCCC-CCCCCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHH
Q 012142 228 PMASEPQL-PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKA 306 (470)
Q Consensus 228 ~~~~~~~~-~~~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA 306 (470)
+....+.. .....++++|++++||.|+++|..|++++||+|.+.++|++.|+++|++++..+.++ |.|+|+++|++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~-g~klt~~~f~~kA 239 (404)
T COG0508 161 PAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLVKA 239 (404)
T ss_pred cccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhccc-CccccHHHHHHHH
Confidence 00000000 123467889999999999999999999999999999999999999999999887645 9999999999999
Q ss_pred HHHHhhhCCccceEEeCC--eEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCc
Q 012142 307 AVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGG 384 (470)
Q Consensus 307 ~~~AL~~~P~lNa~~~~~--~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~gg 384 (470)
++.||++||.+|++++++ .+++++++|||+||++++||++|||||+|++++.+|++++.+|..++|+|+|+++||+||
T Consensus 240 ~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~~~e~~gg 319 (404)
T COG0508 240 VVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGG 319 (404)
T ss_pred HHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcCHHHhCCc
Confidence 999999999999999875 799999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChh
Q 012142 385 TFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPR 464 (470)
Q Consensus 385 TftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~ 464 (470)
||||||+|+||+..|+||||+||+||||+|++.++|++.+|+++++++|+|+||||||+|||+++++||..+|++||||.
T Consensus 320 tftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~le~p~ 399 (404)
T COG0508 320 TFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPE 399 (404)
T ss_pred eEEeecCCccccceecccccChhHheeeccccccCceEecCceeeEeeEeecccccccccccHHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 012142 465 RLLLD 469 (470)
Q Consensus 465 ~lll~ 469 (470)
.||++
T Consensus 400 ~ll~~ 404 (404)
T COG0508 400 RLLLE 404 (404)
T ss_pred hhhcC
Confidence 99875
No 10
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=7.4e-83 Score=670.25 Aligned_cols=375 Identities=32% Similarity=0.484 Sum_probs=308.3
Q ss_pred EEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCe-eCCCCeEEEEEeCCCc
Q 012142 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET-VEPGAKIAVISKSGEG 170 (470)
Q Consensus 92 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~-v~~G~~l~~i~~~~~~ 170 (470)
+|+||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |++|++|++|++.+++
T Consensus 1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~ 80 (435)
T TIGR01349 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED 80 (435)
T ss_pred CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence 378999999999999999999999999999999999999999999999999999999999999 9999999999754332
Q ss_pred cc-c--------c--c--ccccccC-C---CCC--CCCCC--CCC---C-----CCCCcccCcccccC-----------C
Q 012142 171 VA-Q--------A--A--SAEKAAA-Q---PPP--AEEKP--SAE---K-----QTPESEAAPAVKDK-----------T 210 (470)
Q Consensus 171 ~~-~--------~--~--~~~~~~~-~---~~~--~~~~~--~~e---~-----~~~~~~asP~~r~~-----------~ 210 (470)
.. . . . +....+. . +.+ .+... ... . ....+.++|++|++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~ 160 (435)
T TIGR01349 81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA 160 (435)
T ss_pred cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence 11 0 0 0 0000000 0 000 00000 000 0 01124578988864 3
Q ss_pred CCCCCCCCCC-------CC--CCCCCC--CC--CCC--CCC-CCCCcceeechhHHHHHHHHHHhcccccceEEEEeccc
Q 012142 211 PSEPPPTAKK-------PT--SPPSKP--MA--SEP--QLP-PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVD 274 (470)
Q Consensus 211 ~s~~~~~~~~-------~~--~~~~~~--~~--~~~--~~~-~~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eid 274 (470)
++++.+...+ .. ...+.+ .+ ..+ ..+ ....++.+||+++||.|+++|++|++++||+|++.|+|
T Consensus 161 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd 240 (435)
T TIGR01349 161 GSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECN 240 (435)
T ss_pred CCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEE
Confidence 4555433210 00 000000 00 000 000 11124578999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEecCCceEEeeEcCCCC
Q 012142 275 MTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSER 354 (470)
Q Consensus 275 vt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~ 354 (470)
+++|+++|+++++.+. + |.|+||++||+||+++||++||.+|++|++++|+++++|||||||++++||+||||||+|+
T Consensus 241 ~t~l~~~r~~~~~~~~-~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~ 318 (435)
T TIGR01349 241 VDKLLALRKELNAMAS-E-VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVRNADA 318 (435)
T ss_pred hHHHHHHHHHHHhhhh-c-CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCCCccc
Confidence 9999999999997543 2 8899999999999999999999999999998999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEEeCCe---EEEEc
Q 012142 355 MNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGN---VVPRP 431 (470)
Q Consensus 355 ~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~g~---i~~~~ 431 (470)
|||.||++++++|++++|+|+|+++||+||||||||+|++|+.+|+|||||||+||||+|+++++|++++|+ +++++
T Consensus 319 ~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~~~~~~~i~~~~ 398 (435)
T TIGR01349 319 KGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVAS 398 (435)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEeCCccceeEEee
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877 99999
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 432 MMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 432 ~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
+|+||||||||||||++||+||++|+++||||+.||+
T Consensus 399 ~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 399 IMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred eEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999999999999998875
No 11
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.3e-84 Score=638.11 Aligned_cols=413 Identities=25% Similarity=0.432 Sum_probs=338.1
Q ss_pred eeeeeeecCCCceecCCCchhhhhhhcCCccccccccccCCCCceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEE
Q 012142 46 QRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIA 125 (470)
Q Consensus 46 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~ 125 (470)
.|+++|..++.|.|+....++.. +|.+.-.-.. ......++|++.++|||+.|.+|.+|+|||||+|++.|+||
T Consensus 26 ~~~~~h~skp~~v~l~~~~~~~~-----s~~~~~~~~t-~s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lC 99 (474)
T KOG0558|consen 26 LSSSLHVSKPFFVTLMKWGGGSR-----SWFSNEAMAT-DSNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLC 99 (474)
T ss_pred hccCccccCcceEEEeccCCccc-----cccchhhhhc-ccccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchh
Confidence 45667777788877766555441 1111000001 12234899999999999999999999999999999999999
Q ss_pred EEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCCccccccccccccCCCCC-CCCCCCCCCCCCCcccCc
Q 012142 126 QIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPP-AEEKPSAEKQTPESEAAP 204 (470)
Q Consensus 126 evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~asP 204 (470)
||++||++++|.|.|+|+|++|+.+.||...+|++|..++.++..+.... ..+.++. .+.....+....+.+++|
T Consensus 100 EVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~~~ds~e~----s~es~~vs~~~~~~~~~~~~~tlaTP 175 (474)
T KOG0558|consen 100 EVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVEDSQDSPED----SDESPAVSLGESKQGEESLLKTLATP 175 (474)
T ss_pred hcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeeccCcCCccc----CCccccccCCCCchhhhhccccccCH
Confidence 99999999999999999999999999999999999999998764332111 1111111 111122244455778999
Q ss_pred ccccCC-----------CCCCC--CCCC-----CCCCC-------------CCCCCCCCCCCCCCCCcceeechhHHHHH
Q 012142 205 AVKDKT-----------PSEPP--PTAK-----KPTSP-------------PSKPMASEPQLPPKDRERRVPMTRLRKRV 253 (470)
Q Consensus 205 ~~r~~~-----------~s~~~--~~~~-----~~~~~-------------~~~~~~~~~~~~~~~~~~~vpls~~rk~i 253 (470)
++|+++ +++.. ..++ ..+.| .+.++++....+.-..++.+|+.+++|+|
T Consensus 176 aVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAM 255 (474)
T KOG0558|consen 176 AVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAM 255 (474)
T ss_pred HHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHH
Confidence 999752 22222 2221 00000 01111111112223457889999999999
Q ss_pred HHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeC--CeEEEeCC
Q 012142 254 ATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDY 331 (470)
Q Consensus 254 a~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~--~~i~~~~~ 331 (470)
.+.|+.+. .||||.|.+|||+|.|+++|+++|+. .+..|+|+|||+|+|||+++||.+||.+|+++|. ..|+++.+
T Consensus 256 vKtMt~al-kiPHF~y~dEIn~~sLvklr~elk~~-a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~s 333 (474)
T KOG0558|consen 256 VKTMTEAL-KIPHFGYVDEINCDSLVKLRQELKEN-AKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGS 333 (474)
T ss_pred HHHHHHHh-cCCccccccccChHHHHHHHHHHhhh-hhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcc
Confidence 99999996 69999999999999999999999975 4578999999999999999999999999999987 57999999
Q ss_pred ccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcceeeeeCCCCeEEE
Q 012142 332 IDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAIL 411 (470)
Q Consensus 332 inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL 411 (470)
||||+||||++||+||+|||++.+||.||++||++|+++++.|+|+++|+.|||||+||+|.+|++|..|+|+|||+||.
T Consensus 334 HNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIg 413 (474)
T KOG0558|consen 334 HNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIG 413 (474)
T ss_pred cceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecceeeeEEEe-CCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012142 412 GMHSIVNRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 470 (470)
Q Consensus 412 ~vG~i~~~pv~~-~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 470 (470)
++|+|.+.|.++ .|++....+|.++|++|||||||+++|||.+.||+|||||..|||+|
T Consensus 414 AlGrie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~mll~l 473 (474)
T KOG0558|consen 414 ALGRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLLQL 473 (474)
T ss_pred hccccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHhhcc
Confidence 999999999996 69999999999999999999999999999999999999999999976
No 12
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=1e-82 Score=686.26 Aligned_cols=377 Identities=34% Similarity=0.519 Sum_probs=309.7
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.++|+||+||+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred ccccc-cccc-----cccCCCCC----CCCC-C--CCC---C---CCCCc-ccCcccccC-----------CCCCCCCCC
Q 012142 170 GVAQA-ASAE-----KAAAQPPP----AEEK-P--SAE---K---QTPES-EAAPAVKDK-----------TPSEPPPTA 218 (470)
Q Consensus 170 ~~~~~-~~~~-----~~~~~~~~----~~~~-~--~~e---~---~~~~~-~asP~~r~~-----------~~s~~~~~~ 218 (470)
+.... .+.. ..+....+ .+.. . ... . ..... .++|++|++ .++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI 274 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI 274 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence 21100 0000 00000000 0000 0 000 0 01123 578988864 345544332
Q ss_pred CC-------CC----CCCCCCC-C-C---CCCCC-----CCCCcceeechhHHHHHHHHHHhcccccceEEEEeccccHH
Q 012142 219 KK-------PT----SPPSKPM-A-S---EPQLP-----PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 277 (470)
Q Consensus 219 ~~-------~~----~~~~~~~-~-~---~~~~~-----~~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~ 277 (470)
.+ .. .++..+. + + .+..+ ....++.+||+++||.|+++|++|++++||||++.|+|+|+
T Consensus 275 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~ 354 (546)
T TIGR01348 275 LREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITE 354 (546)
T ss_pred eHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHH
Confidence 10 00 0000000 0 0 00000 00123568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeC--CeEEEeCCccEEEEEecCCceEEeeEcCCCCC
Q 012142 278 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERM 355 (470)
Q Consensus 278 l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~--~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~ 355 (470)
|+++|+++|+.+. +.|+|+||++||+||+++||++||.+|++|++ +.|+++++|||||||++++||+||||||+|+|
T Consensus 355 l~~~r~~l~~~~~-~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~ 433 (546)
T TIGR01348 355 MEAFRKQQNAAVE-KEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRK 433 (546)
T ss_pred HHHHHHHHHhhhh-hcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccC
Confidence 9999999997654 35899999999999999999999999999984 57999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEE
Q 012142 356 NFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYI 435 (470)
Q Consensus 356 sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~l 435 (470)
||.||++++++|++++|+|+|+++||+||||||||+|+||+++|+|||||||+||||+|+++++|++++|+++++++|+|
T Consensus 434 sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~l 513 (546)
T TIGR01348 434 GITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPL 513 (546)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 436 ALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 436 tls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
|||||||||||++||+||++|+++||||+.|||
T Consensus 514 tls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 514 SLSYDHRVIDGADAARFTTYICESLADIRRLLL 546 (546)
T ss_pred eEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999998875
No 13
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=9.1e-78 Score=658.48 Aligned_cols=379 Identities=29% Similarity=0.488 Sum_probs=309.7
Q ss_pred CceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 88 ~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.+.++|+||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+++
T Consensus 204 ~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~ 281 (633)
T PRK11854 204 AGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVE 281 (633)
T ss_pred CCceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 456899999999 999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCcccccccc--ccccCC-----CCCCCCCC-C--C--C--CCCCCcccCcccccC-----------CCCCCCCCCCC--
Q 012142 168 GEGVAQAASA--EKAAAQ-----PPPAEEKP-S--A--E--KQTPESEAAPAVKDK-----------TPSEPPPTAKK-- 220 (470)
Q Consensus 168 ~~~~~~~~~~--~~~~~~-----~~~~~~~~-~--~--e--~~~~~~~asP~~r~~-----------~~s~~~~~~~~-- 220 (470)
+++....... ...+.+ ..+.+... . . + .......++|++|++ .++++.+...+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 361 (633)
T PRK11854 282 GAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKED 361 (633)
T ss_pred CCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHH
Confidence 4321100000 000000 00000000 0 0 0 011134578998864 34554333210
Q ss_pred -----CC----C--CCCC-CCC-CC------CCCCC--CCCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHH
Q 012142 221 -----PT----S--PPSK-PMA-SE------PQLPP--KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLM 279 (470)
Q Consensus 221 -----~~----~--~~~~-~~~-~~------~~~~~--~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~ 279 (470)
.. . .+.. +.. .. +..+. ...++++||+++||.|+++|.+||+++|||+++.++|+|+|+
T Consensus 362 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~ 441 (633)
T PRK11854 362 VQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELE 441 (633)
T ss_pred HHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHH
Confidence 00 0 0000 000 00 00000 112356899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hhcCcccchHHHHHHHHHHHhhhCCccceEEe--CCeEEEeCCccEEEEEecCCceEEeeEcCCCCCC
Q 012142 280 KLRSDYKDAFL-EKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMN 356 (470)
Q Consensus 280 ~~r~~~~~~~~-~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~--~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~s 356 (470)
++|+++++... ++.|+|+|+++||+||+++||++||+||++|+ ++++++++++||||||++++||+||||||++++|
T Consensus 442 ~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~~s 521 (633)
T PRK11854 442 AFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKG 521 (633)
T ss_pred HHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCccCC
Confidence 99999885432 24589999999999999999999999999996 4579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEE
Q 012142 357 FAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIA 436 (470)
Q Consensus 357 l~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~lt 436 (470)
|.+|++++++|++++|+|+|+++||+||||||||+|++|+++|+|||||||+||||+|+++++|++++|.++++++|+||
T Consensus 522 l~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~~~~~r~~m~ls 601 (633)
T PRK11854 522 IIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLS 601 (633)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECCEEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 437 LTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 437 ls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
||||||||||+++|+||++|+++||||..|||
T Consensus 602 lt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 602 LSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred EEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999999998875
No 14
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=4.5e-77 Score=608.24 Aligned_cols=379 Identities=29% Similarity=0.439 Sum_probs=313.7
Q ss_pred CCceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCC-CeeCCCCeEEEEE
Q 012142 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG-ETVEPGAKIAVIS 165 (470)
Q Consensus 87 ~~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG-~~v~~G~~l~~i~ 165 (470)
.+.+..|.||.|+++|+||+|++|.+||||++.+||.||||||||++|++++.++|+|.||+++|| ..|++|++||+|.
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 588999999999999999999999999999999999999999999999999999999999999999 6999999999998
Q ss_pred eCCCccccccccccc---c---CCCCC--CCCC------C----CC--CCC-----CCCcccCcccccC-----------
Q 012142 166 KSGEGVAQAASAEKA---A---AQPPP--AEEK------P----SA--EKQ-----TPESEAAPAVKDK----------- 209 (470)
Q Consensus 166 ~~~~~~~~~~~~~~~---~---~~~~~--~~~~------~----~~--e~~-----~~~~~asP~~r~~----------- 209 (470)
+.+++..+.+...++ . ...++ +++. + ++ ..+ ..++.++|.++.+
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i 194 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI 194 (470)
T ss_pred cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence 877765433221110 0 00000 0000 0 00 000 1134456666532
Q ss_pred CCCCCCCCCCC-------C----CCCC-CCCCCCCC----CCCCCCCcceeechhHHHHHHHHHHhcccccceEEEEecc
Q 012142 210 TPSEPPPTAKK-------P----TSPP-SKPMASEP----QLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEV 273 (470)
Q Consensus 210 ~~s~~~~~~~~-------~----~~~~-~~~~~~~~----~~~~~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~ei 273 (470)
.+++|.+...+ + +... +.++++.+ .......++++|++.||+.+++||.+|+++|||+|+..++
T Consensus 195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~~ 274 (470)
T KOG0557|consen 195 PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVDV 274 (470)
T ss_pred cCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeeee
Confidence 34555544210 0 1000 00000000 0112234789999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeC-CeEEEeCCccEEEEEecCCceEEeeEcCC
Q 012142 274 DMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG-DDIIYRDYIDISFAVGTKKGLVVPVIRNS 352 (470)
Q Consensus 274 dvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~-~~i~~~~~inIgiAv~t~~GL~vPvI~~a 352 (470)
+++.|+++|+++| + ++.+.++|+++|++||++.||+++|++|++|++ +.|.++++|||++||.+++||++|+|+|+
T Consensus 275 ~~d~ll~~r~~ln--~-~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~na 351 (470)
T KOG0557|consen 275 NLDKLLALREKLN--F-EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQNA 351 (470)
T ss_pred ehHHHHHHHHHhh--h-cccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhhc
Confidence 9999999999998 2 367889999999999999999999999999988 67889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEE--e-CCeEEE
Q 012142 353 ERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMV--V-GGNVVP 429 (470)
Q Consensus 353 ~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~--~-~g~i~~ 429 (470)
|.+.+.+|++++.+|+++||+|+|.++||+|||||||||||||++.|+.||||||.|||++|...+..|. + ++++..
T Consensus 352 ~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~ 431 (470)
T KOG0557|consen 352 DAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSV 431 (470)
T ss_pred ccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999998877663 2 467889
Q ss_pred EcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 430 RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 430 ~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
...|++|||+|||++||+.++|||..|+++||||+.|||
T Consensus 432 ~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 432 INAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred eeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 999999999999999999999999999999999999986
No 15
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.2e-74 Score=623.37 Aligned_cols=378 Identities=39% Similarity=0.612 Sum_probs=309.5
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+..+|+||+||+ |+||+|++|+|++||.|++||.|++||+||+.++|+||++|+|.++++++|+.|.+|++|+.++..+
T Consensus 118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~ 196 (547)
T PRK11855 118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA 196 (547)
T ss_pred CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 458999999999 9999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred Cccccc---cccccc-c--C--CCCCCCC---CCCC-CCC--CCCc-ccCcccccC-----------CCCCCCCCCCC--
Q 012142 169 EGVAQA---ASAEKA-A--A--QPPPAEE---KPSA-EKQ--TPES-EAAPAVKDK-----------TPSEPPPTAKK-- 220 (470)
Q Consensus 169 ~~~~~~---~~~~~~-~--~--~~~~~~~---~~~~-e~~--~~~~-~asP~~r~~-----------~~s~~~~~~~~-- 220 (470)
++.... ...+.. . . ...+... .... ... .... .++|++|++ .++++.+...+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 276 (547)
T PRK11855 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKED 276 (547)
T ss_pred CccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHH
Confidence 221000 000000 0 0 0000000 0000 000 1122 578988864 34555433210
Q ss_pred -----CC-----CCCCC-CCCC---CC---CCCC-----CCCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHH
Q 012142 221 -----PT-----SPPSK-PMAS---EP---QLPP-----KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNL 278 (470)
Q Consensus 221 -----~~-----~~~~~-~~~~---~~---~~~~-----~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l 278 (470)
.. .+++. +.+. .. ..+. ...++.+||+++||.||++|++||+++||||++.++|+++|
T Consensus 277 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l 356 (547)
T PRK11855 277 VQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDL 356 (547)
T ss_pred HHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHH
Confidence 00 00000 0000 00 0000 01245789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEe--CCeEEEeCCccEEEEEecCCceEEeeEcCCCCCC
Q 012142 279 MKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMN 356 (470)
Q Consensus 279 ~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~--~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~s 356 (470)
+++|+++++.+. +.|+|+||++||+||+++||++||+||++|+ ++.++++++||||+||++++||++|||+|++++|
T Consensus 357 ~~~r~~~~~~~~-~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~s 435 (547)
T PRK11855 357 EALRKQLKKEAE-KAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKKS 435 (547)
T ss_pred HHHHHHhhhhhh-hcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccCC
Confidence 999999997554 3589999999999999999999999999998 4679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEE
Q 012142 357 FAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIA 436 (470)
Q Consensus 357 l~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~lt 436 (470)
+.+|++++++|++++|+|+|.++|++||||||||+|++|+++|+|||||||+||||+|+++++|++.+|.+..+++|+||
T Consensus 436 l~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~~~~~r~~m~ls 515 (547)
T PRK11855 436 LLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPLS 515 (547)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeeeCCEEEEEeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred EEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 437 LTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 437 ls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
|+||||||||+++++||++|+++||||+.||+
T Consensus 516 lt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 516 LSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred EEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999999999875
No 16
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=2.6e-73 Score=596.32 Aligned_cols=376 Identities=39% Similarity=0.666 Sum_probs=310.0
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|.++++||++|++|++|+|++|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|.+|++|+.|...+
T Consensus 1 M~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred C-ccccccc-cccc-cCCCC--CCC--CCC-CC---C-CCC-CCcccCcccccC-----------CCCCCCCCCCC----
Q 012142 169 E-GVAQAAS-AEKA-AAQPP--PAE--EKP-SA---E-KQT-PESEAAPAVKDK-----------TPSEPPPTAKK---- 220 (470)
Q Consensus 169 ~-~~~~~~~-~~~~-~~~~~--~~~--~~~-~~---e-~~~-~~~~asP~~r~~-----------~~s~~~~~~~~---- 220 (470)
+ +...... .... ...+. ..+ ... .. . ... ....++|++|++ .++++.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~ 160 (411)
T PRK11856 81 EAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVE 160 (411)
T ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHH
Confidence 4 2111100 0000 00000 000 000 00 0 001 122568888864 34555433211
Q ss_pred ---CC--CCCCCCCCCCCCC--CCCCCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhc
Q 012142 221 ---PT--SPPSKPMASEPQL--PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKH 293 (470)
Q Consensus 221 ---~~--~~~~~~~~~~~~~--~~~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~ 293 (470)
.. .++..+....... .....++.+|++++||.||++|.+||+++||++++.++|+|+|+++|+++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~~~----- 235 (411)
T PRK11856 161 AAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKAI----- 235 (411)
T ss_pred HHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHHhh-----
Confidence 00 0000000000000 01123567899999999999999999999999999999999999999998642
Q ss_pred CcccchHHHHHHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhc
Q 012142 294 GVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKAND 373 (470)
Q Consensus 294 g~kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~ 373 (470)
+.++||++||+||+++||.+||+||++|++++++++++||||+||++++||++|||++++++++.||+++++++++++++
T Consensus 236 ~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~~~~~ar~ 315 (411)
T PRK11856 236 GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKARE 315 (411)
T ss_pred ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHH
Q 012142 374 GSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFL 453 (470)
Q Consensus 374 g~L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl 453 (470)
|+|+++|++||||||||+|++|+.+|+|||||||+|||++|+++++|++.+|+++++.+|+|||+||||++||+++++||
T Consensus 316 ~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g~~~~~~~m~lslt~DHRviDG~~aa~Fl 395 (411)
T PRK11856 316 GKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFL 395 (411)
T ss_pred CCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECCEEEEEEEEEEeEEeehhhcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhhhhcc
Q 012142 454 RRIKDIVEDPRRLLLD 469 (470)
Q Consensus 454 ~~lk~~LE~P~~lll~ 469 (470)
+.|+++||||+.||++
T Consensus 396 ~~l~~~le~p~~ll~~ 411 (411)
T PRK11856 396 KALKELLENPALLLLE 411 (411)
T ss_pred HHHHHHHhCHHHHhcC
Confidence 9999999999999874
No 17
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=1.7e-67 Score=512.25 Aligned_cols=228 Identities=46% Similarity=0.757 Sum_probs=205.0
Q ss_pred CcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccce
Q 012142 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (470)
Q Consensus 240 ~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa 319 (470)
.++++|++++||+||++|++|++++||+|++.|+|+++|+++|+++++... ..+.|+|+++|++||+++||++||.+|+
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~-~~~~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGE-EPGGKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHH-HTTST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHH-hhccCCChhHeeeehHhhhhHHHHHhcc
Confidence 567899999999999999999999999999999999999999999998654 3456999999999999999999999999
Q ss_pred EEeCCe-EEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcc
Q 012142 320 VIDGDD-IIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLL 398 (470)
Q Consensus 320 ~~~~~~-i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~ 398 (470)
+|+++. +++++++||||||++++||++|||+|++++|+.||+++++++++++|+|+|+++||+||||||||+|++|+++
T Consensus 82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~ 161 (231)
T PF00198_consen 82 SWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVES 161 (231)
T ss_dssp EEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SC
T ss_pred ccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcce
Confidence 999877 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 399 STPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 399 ~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
|+|||||||+|||++|+++++|++.+|+++++++|++||||||||+||++||+||++|+++||||++|||
T Consensus 162 ~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 162 FTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp EE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred eEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986
No 18
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=1.6e-67 Score=538.76 Aligned_cols=228 Identities=36% Similarity=0.627 Sum_probs=220.2
Q ss_pred cceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceE
Q 012142 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (470)
Q Consensus 241 ~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~ 320 (470)
++.+|++++||.||++|++||+++||||++.|+|+++|+++|+++++.+.++.|+|+||++||+||++.||++||.+|++
T Consensus 118 ~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~ 197 (347)
T PRK14843 118 IERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINAS 197 (347)
T ss_pred ceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEE
Confidence 45689999999999999999999999999999999999999999997665566899999999999999999999999999
Q ss_pred EeC--CeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcc
Q 012142 321 IDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLL 398 (470)
Q Consensus 321 ~~~--~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~ 398 (470)
|++ +.++++++|||||||++++||+||||||+|+||+.||++++++|+++||+|+|+++||+||||||||+|+||+++
T Consensus 198 ~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~ 277 (347)
T PRK14843 198 LTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQS 277 (347)
T ss_pred EecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccc
Confidence 984 469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 399 STPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 399 ~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
|+|||||||+||||+|+++++|+++||+++++++|+||||||||||||++||+||++|+++||||+.||+
T Consensus 278 ~tpIInpPq~aIlgvG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 278 FGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred eeccccCCceEEEecCCcceeeEEECCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998874
No 19
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=9.6e-67 Score=524.76 Aligned_cols=228 Identities=39% Similarity=0.628 Sum_probs=220.2
Q ss_pred cceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceE
Q 012142 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (470)
Q Consensus 241 ~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~ 320 (470)
++.+||+++||.|+++|++|++++||++++.|+|+++|+++|+++++.+.++.|+|+||++||+||+++||++||.+|++
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~ 155 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK 155 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence 45689999999999999999999999999999999999999999998766667999999999999999999999999999
Q ss_pred EeC--CeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcc
Q 012142 321 IDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLL 398 (470)
Q Consensus 321 ~~~--~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~ 398 (470)
|++ ++++++++|||||||++++||+||||||+|+||+.||++++++|++++|+|+|+++||+||||||||+|++|+.+
T Consensus 156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~ 235 (306)
T PRK11857 156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY 235 (306)
T ss_pred EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence 985 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 399 STPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 399 ~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
|+|||||||+||||+|+++++|++.||+++++++|+||||||||||||++||+||++|+++||||+.|++
T Consensus 236 ~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~ 305 (306)
T PRK11857 236 GVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV 305 (306)
T ss_pred eecccCCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=8.5e-55 Score=473.50 Aligned_cols=221 Identities=25% Similarity=0.387 Sum_probs=211.2
Q ss_pred CcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccce
Q 012142 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (470)
Q Consensus 240 ~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa 319 (470)
..+.+||++++++|+++|..|+. +|+++...+||++.|+++|..+|+.+.+..|.|+||||+|+||+++||++||.+|+
T Consensus 114 ~~~~~~LrG~a~aiAkNM~aSL~-vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNa 192 (1228)
T PRK12270 114 EDEVTPLRGAAAAVAKNMDASLE-VPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNR 192 (1228)
T ss_pred CcceeecccHHHHHHHHHHhhhc-cCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhc
Confidence 35678999999999999999975 99999999999999999999999998889999999999999999999999999999
Q ss_pred EEe--CC--eEEEeCCccEEEEEecC-----CceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEec
Q 012142 320 VID--GD--DIIYRDYIDISFAVGTK-----KGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISN 390 (470)
Q Consensus 320 ~~~--~~--~i~~~~~inIgiAv~t~-----~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISN 390 (470)
+|+ ++ .++++++||||||||++ +||+|||||+||+|++.||.+++++|++|||+|+|+++||+||||||||
T Consensus 193 sy~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN 272 (1228)
T PRK12270 193 HYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTN 272 (1228)
T ss_pred eeeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEec
Confidence 997 33 39999999999999998 6899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeeeCCCCeEEEEecceeeeEEEeC------CeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhc
Q 012142 391 GGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVG------GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 461 (470)
Q Consensus 391 lG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~------g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE 461 (470)
+|+||+.+|+|||||||+||||+|++...|++.+ +++.++++|+||+|||||||||+++++||+.|+++||
T Consensus 273 ~G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 273 PGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred CCcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888743 5899999999999999999999999999999999999
No 21
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.77 E-value=1.2e-18 Score=140.48 Aligned_cols=74 Identities=38% Similarity=0.780 Sum_probs=72.1
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
.+|++|.+|..+.++++.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999986
No 22
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.71 E-value=3.7e-17 Score=166.93 Aligned_cols=79 Identities=38% Similarity=0.632 Sum_probs=76.0
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
..+++||++|++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.+++.+
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999997543
No 23
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.67 E-value=2.3e-15 Score=160.13 Aligned_cols=81 Identities=36% Similarity=0.646 Sum_probs=76.4
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCC-eeCCCCeEEEEEeCC
Q 012142 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVISKSG 168 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~-~v~~G~~l~~i~~~~ 168 (470)
.++|+||++|++|+||+|.+|+|++||.|++||+|++|||||++++++||.+|+|.++++++|+ .|++|++|+.|+.++
T Consensus 2 ~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 2 AIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 4689999999999999999999999999999999999999999999999999999999999995 799999999997655
Q ss_pred Cc
Q 012142 169 EG 170 (470)
Q Consensus 169 ~~ 170 (470)
++
T Consensus 82 ~~ 83 (464)
T PRK11892 82 ES 83 (464)
T ss_pred Cc
Confidence 43
No 24
>PRK06748 hypothetical protein; Validated
Probab=99.67 E-value=3.4e-16 Score=128.48 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=60.6
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe-CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET-DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt-dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
|+|.+|+|++||.|++||+|++||| ||+..+|+||.+|+|.++++++||.|++|++|+.|++
T Consensus 13 G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 13 GKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 9999999999999999999999999 9999999999999999999999999999999999964
No 25
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.58 E-value=1.2e-14 Score=116.21 Aligned_cols=63 Identities=24% Similarity=0.418 Sum_probs=60.7
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
-.|+|.+|+|++||.|++||+|+++|+||++++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 349999999999999999999999999999999999999999999999999999999999874
No 26
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.53 E-value=5.5e-14 Score=112.36 Aligned_cols=72 Identities=35% Similarity=0.637 Sum_probs=69.6
Q ss_pred EEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 93 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
+.+|+++.++.+|++.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999874
No 27
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.53 E-value=2.8e-14 Score=128.90 Aligned_cols=61 Identities=34% Similarity=0.584 Sum_probs=60.2
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
|++.+.+|++||+|++||.||+||+|||.++|+||.+|+|.+|++++||.|..|++|+.|+
T Consensus 79 Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 79 GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 28
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.49 E-value=1e-13 Score=153.09 Aligned_cols=77 Identities=32% Similarity=0.588 Sum_probs=73.9
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
|..+|.||+|| |.||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++||.|.+|++|+.|+.+
T Consensus 1 m~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 1 MAIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred CCceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 34579999999 999999999999999999999999999999999999999999999999999999999999999875
No 29
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.47 E-value=1.9e-13 Score=108.74 Aligned_cols=61 Identities=26% Similarity=0.467 Sum_probs=59.9
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
|+|.+|++++||+|++||+|++||+||+.+++.|+.+|+|.++++++||.|..|++|+.|+
T Consensus 10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999884
No 30
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.46 E-value=2.2e-13 Score=149.20 Aligned_cols=79 Identities=43% Similarity=0.752 Sum_probs=75.7
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
|.+++.||+||++|.+|+|++|+|++||.|++||+||+|||||+.++|+|+.+|+|.++++++|+.|++|++|+.|+..
T Consensus 1 M~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 1 MAFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred CCeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999999999764
No 31
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.40 E-value=1.6e-12 Score=115.66 Aligned_cols=62 Identities=27% Similarity=0.513 Sum_probs=60.1
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
..|+|.+|++++||.|++||+|+++|+||++++|.||.+|+|.++++++||.|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 34999999999999999999999999999999999999999999999999999999999987
No 32
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.39 E-value=1.6e-12 Score=141.60 Aligned_cols=80 Identities=38% Similarity=0.658 Sum_probs=75.5
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|.++++||++|+ |.+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|..|++|+.+++.+
T Consensus 1 M~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 1 MAIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred CCceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 346799999999 9999999999999999999999999999999999999999999999999999999999999997544
Q ss_pred C
Q 012142 169 E 169 (470)
Q Consensus 169 ~ 169 (470)
.
T Consensus 80 ~ 80 (547)
T PRK11855 80 A 80 (547)
T ss_pred c
Confidence 3
No 33
>PRK07051 hypothetical protein; Validated
Probab=99.35 E-value=5.6e-12 Score=103.18 Aligned_cols=69 Identities=29% Similarity=0.428 Sum_probs=64.1
Q ss_pred EEEEcCCCCCCCceEEEEE-------EEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEE
Q 012142 91 VDAVVPFMGESITDGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~-------w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~ 163 (470)
.++..| ..|++.+ |++++||.|++||+++++|+||+.++|.||.+|+|.++++++|+.|..|++|+.
T Consensus 4 ~~~~ap------~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~ 77 (80)
T PRK07051 4 HEIVSP------LPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR 77 (80)
T ss_pred cEEeCC------CceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence 456666 4588988 999999999999999999999999999999999999999999999999999999
Q ss_pred EE
Q 012142 164 IS 165 (470)
Q Consensus 164 i~ 165 (470)
++
T Consensus 78 i~ 79 (80)
T PRK07051 78 IE 79 (80)
T ss_pred Ee
Confidence 85
No 34
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.34 E-value=4.8e-12 Score=115.79 Aligned_cols=62 Identities=24% Similarity=0.568 Sum_probs=60.1
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
..|+|.+|+|++||.|++||.|+++|+|||+.+|.||.+|+|.++++++||.|..|++|+.|
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 44999999999999999999999999999999999999999999999999999999999987
No 35
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.30 E-value=8.6e-12 Score=135.70 Aligned_cols=75 Identities=32% Similarity=0.626 Sum_probs=72.3
Q ss_pred EEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 92 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
+|+||+||+. .+|+|++|+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.|+..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 5899999987 99999999999999999999999999999999999999999999999999999999999999754
No 36
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.27 E-value=2.5e-11 Score=94.29 Aligned_cols=62 Identities=40% Similarity=0.705 Sum_probs=59.7
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
..|+|.+|++++||.|++||+|+++|++|+..+|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 46999999999999999999999999999999999999999999999999999999999874
No 37
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.27 E-value=1.5e-11 Score=120.08 Aligned_cols=62 Identities=26% Similarity=0.450 Sum_probs=59.9
Q ss_pred eEEEEE-------EEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 104 DGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 104 eg~i~~-------w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
.|++.+ |+|++||.|++||+|++||+||+.++|+|+.+|+|.++++++||.|..|++|+.|+
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 488888 99999999999999999999999999999999999999999999999999999984
No 38
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.27 E-value=6.5e-10 Score=106.74 Aligned_cols=176 Identities=17% Similarity=0.209 Sum_probs=127.8
Q ss_pred ccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeCC-eEEEeCCccEEEEEec-
Q 012142 263 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD-DIIYRDYIDISFAVGT- 340 (470)
Q Consensus 263 ~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~~-~i~~~~~inIgiAv~t- 340 (470)
.-|.+.++.++|+|+|.+..++ . ++++...++.++.+|+.++|++.-+++++ ++++++.++.+.+|-.
T Consensus 24 ~~p~~svT~~lDvT~l~~~~K~--------~--~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~ 93 (206)
T PF00302_consen 24 DNPYFSVTVNLDVTNLYKYAKE--------K--GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHK 93 (206)
T ss_dssp SBEEEEEEEEEE-HHHHHHHHH--------T--T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEET
T ss_pred CCceEecceeEEhHHHHHHHHH--------c--CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeC
Confidence 4589999999999999876433 2 56889999999999999999999999886 9999999999999975
Q ss_pred CCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcC-CCCccc-cCCccEEEecCCCCCCcce-eeeeCCCC--eEEEEecc
Q 012142 341 KKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG-SISIDE-MAGGTFTISNGGVYGSLLS-TPIINPPQ--SAILGMHS 415 (470)
Q Consensus 341 ~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g-~L~~~d-~~ggTftISNlG~~G~~~~-~pii~ppq--~aIL~vG~ 415 (470)
+++.+.-+.-. -.-++.+..++..+.++++++. .+.+++ .....|-+|++=-+.-+.+ .|+-+.+. .-++..|+
T Consensus 94 ~~~tFs~~~~~-y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK 172 (206)
T PF00302_consen 94 DDETFSFCWTE-YDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGK 172 (206)
T ss_dssp TTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE-
T ss_pred CCCeEEEEEec-CCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeee
Confidence 45666544332 2337999999998888888763 465543 4445788888877766665 34443332 45799999
Q ss_pred eeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHH
Q 012142 416 IVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIK 457 (470)
Q Consensus 416 i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk 457 (470)
..+ .+|++ +|||++.+-|.++||..+++|+++|.
T Consensus 173 ~~~----~~gr~----~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 173 YFE----ENGRL----LMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp -EE----ETTEE----EEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred eEe----ECCEE----EEEEEEEEecccccHHHHHHHHHHhC
Confidence 876 36754 69999999999999999999999874
No 39
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.26 E-value=1.5e-11 Score=113.16 Aligned_cols=62 Identities=24% Similarity=0.427 Sum_probs=59.5
Q ss_pred eEEEEE-------EEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 104 DGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 104 eg~i~~-------w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
-|++.+ |+|++||.|++||.||.||+||+.++|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 399987 99999999999999999999999999999999999999999999999999999873
No 40
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.23 E-value=1.2e-09 Score=105.81 Aligned_cols=191 Identities=12% Similarity=0.167 Sum_probs=139.7
Q ss_pred HHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeCCeEEEe
Q 012142 250 RKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYR 329 (470)
Q Consensus 250 rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~ 329 (470)
||..-+...... -|++.+..++|+|+|.+..++ . ++++.+.++.|+.+|+-++|++.-++.+++++.+
T Consensus 18 RkehF~~f~~~~--~~~fsiT~~iDiT~l~~~~K~--------~--~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~ 85 (219)
T PRK13757 18 RKEHFEAFQSVA--QCTYNQTVQLDITAFLKTVKK--------N--KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIW 85 (219)
T ss_pred cHHHHHHHhcCC--CCceEEEEEEEHHHHHHHHHH--------c--CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEE
Confidence 444544444322 244889999999999865432 2 5688999999999999999999999999999989
Q ss_pred CCccEEEEEecCC-ceEEee-EcCCCCCCHHHHHHHHHHHHHHHhcC-CCCccccCCccEEEecCCCCCCcce-eeeeCC
Q 012142 330 DYIDISFAVGTKK-GLVVPV-IRNSERMNFAEIEKEISTLAKKANDG-SISIDEMAGGTFTISNGGVYGSLLS-TPIINP 405 (470)
Q Consensus 330 ~~inIgiAv~t~~-GL~vPv-I~~a~~~sl~eIa~~l~~l~~~ar~g-~L~~~d~~ggTftISNlG~~G~~~~-~pii~p 405 (470)
+.++.+.++-.++ +++.-+ +.-.+ ++.+..+...+.++++++. .+-++...--.|-||.+=-+.-+.+ .++-+.
T Consensus 86 D~i~ps~Ti~~~~~~tFs~~~~~y~~--df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~ 163 (219)
T PRK13757 86 DSVHPCYTVFHEQTETFSSLWSEYHD--DFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM 163 (219)
T ss_pred eEEeeeEEEEeCCCceEEEEEecCcC--CHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccC
Confidence 9999999998655 555544 33333 5777777777777777765 4555544555777776655444443 333333
Q ss_pred C--CeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcC
Q 012142 406 P--QSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 462 (470)
Q Consensus 406 p--q~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~ 462 (470)
. .+-++..|+..+ .+|+ -+|||++.+-|.++||.++++|++.|.++|++
T Consensus 164 ~~~~~P~it~GKy~~----~~gr----~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 164 DNFFAPVFTMGKYYT----QGDK----VLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred CCCcCcEEEeeceEE----ECCE----EEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 3 234789999865 3665 46999999999999999999999999999975
No 41
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.22 E-value=4e-11 Score=130.85 Aligned_cols=62 Identities=23% Similarity=0.527 Sum_probs=60.8
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
|+|++|+|++||.|++||+|++||+|||+.+|+||.+|+|.++++++|+.|.+|++|+.|++
T Consensus 534 G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred eEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999964
No 42
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.20 E-value=4.6e-11 Score=109.81 Aligned_cols=62 Identities=27% Similarity=0.467 Sum_probs=59.4
Q ss_pred eEEEEE-------EEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 104 DGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 104 eg~i~~-------w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
-|++.. |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus 87 ~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 87 VGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 388887 99999999999999999999999999999999999999999999999999999873
No 43
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.20 E-value=2.2e-10 Score=88.63 Aligned_cols=73 Identities=44% Similarity=0.763 Sum_probs=70.3
Q ss_pred EEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 92 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
++.+|+++....+|++.+|++++|+.|..|++++.+|++|+..++.++.+|++.+..+.+|+.+..|++|+.+
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999874
No 44
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.10 E-value=2.4e-10 Score=134.08 Aligned_cols=62 Identities=32% Similarity=0.619 Sum_probs=60.4
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
.|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 49999999999999999999999999999999999999999999999999999999999874
No 45
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.06 E-value=3.2e-10 Score=124.06 Aligned_cols=58 Identities=22% Similarity=0.436 Sum_probs=56.4
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeE
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKI 161 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l 161 (470)
.|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++++++||.|.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 3999999999999999999999999999999999999999999999999999999975
No 46
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.04 E-value=6.7e-10 Score=121.70 Aligned_cols=62 Identities=23% Similarity=0.441 Sum_probs=60.2
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
..|+|++|+|++||.|++||+|+++|+|||+.+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 34999999999999999999999999999999999999999999999999999999999987
No 47
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.01 E-value=8.3e-10 Score=128.66 Aligned_cols=62 Identities=21% Similarity=0.484 Sum_probs=60.2
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
.|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 39999999999999999999999999999999999999999999999999999999999884
No 48
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.95 E-value=1.4e-09 Score=115.23 Aligned_cols=69 Identities=23% Similarity=0.401 Sum_probs=64.5
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
....-+|| |+|+.+.|++|++|.+||+|+.+|.|||++.|++|.+|+|+++.+++||.|..|++|+.++
T Consensus 576 ~~l~aPMp--------G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 576 GELLAPMP--------GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceecCCC--------ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 34555666 9999999999999999999999999999999999999999999999999999999999985
No 49
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.92 E-value=4e-09 Score=115.76 Aligned_cols=63 Identities=27% Similarity=0.553 Sum_probs=61.0
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
..|+|.+|+|++||+|++||+|+++|+||++.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 349999999999999999999999999999999999999999999999999999999999985
No 50
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.85 E-value=7.4e-09 Score=121.18 Aligned_cols=61 Identities=28% Similarity=0.587 Sum_probs=60.1
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
|+|++|+|++||.|++||+|+++|+|||+.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 51
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.70 E-value=1.7e-08 Score=110.28 Aligned_cols=61 Identities=23% Similarity=0.537 Sum_probs=59.8
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
|+|+++.|++||+|++||+|+.+|+|||+..|.||.+|+|.+++|+.||.|..|+.|..++
T Consensus 1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 52
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=98.64 E-value=1.7e-06 Score=81.66 Aligned_cols=182 Identities=11% Similarity=0.141 Sum_probs=131.4
Q ss_pred ccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEecC-
Q 012142 263 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTK- 341 (470)
Q Consensus 263 ~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t~- 341 (470)
..||+..+.+.|++.+-.. +|+ + ++++++.++.|+-+++.+|+++.-++.++...+++.++..+.|-.+
T Consensus 27 ~~p~y~i~~~LDvtn~~~~---vk~----~---~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~~ 96 (219)
T COG4845 27 QYPHYDINLQLDVTNFYGY---VKE----N---GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHGE 96 (219)
T ss_pred ccceEeeeeeeehhHHHHH---HHH----c---CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcCC
Confidence 5799999999999987554 332 1 7799999999999999999999999999999999999999999985
Q ss_pred CceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCC-CCccccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeE
Q 012142 342 KGLVVPVIRNSERMNFAEIEKEISTLAKKANDGS-ISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRP 420 (470)
Q Consensus 342 ~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~-L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~p 420 (470)
++++.-+--+ -..+..+.++....-+++.++|. +.++|-.-. -+-++|.+--..|+.+-.+=+ -.++.-.|
T Consensus 97 ~e~Fs~l~~e-~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~--~~~~~s~lPWlsFtslS~~~~-----~~k~~~~P 168 (219)
T COG4845 97 TETFSVLWTE-YQEDYEDFAQLYIEDIEQYGANNYERAKDPTPC--DVYIFSNLPWLSFTSLSHHYR-----RNKIYGQP 168 (219)
T ss_pred CcEEEEEecc-ccccHHHHHHHHHHHHHHhccCcccccCCCCcc--eeEEeccccccceeeeeeecc-----CCccccce
Confidence 4565544434 55678888887666677776654 222221111 133344444444554422211 11344445
Q ss_pred EEe-------CCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhh
Q 012142 421 MVV-------GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 466 (470)
Q Consensus 421 v~~-------~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~l 466 (470)
++. ||++ +|||++.+.|-.+||-.++.|++.|.+++++|-.+
T Consensus 169 iF~~Grf~~~~Gkl----~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~ 217 (219)
T COG4845 169 IFYAGRFYEEDGKL----TLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI 217 (219)
T ss_pred eEeecceeccCCeE----EEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence 443 6766 49999999999999999999999999999998653
No 53
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.48 E-value=1.9e-07 Score=100.42 Aligned_cols=61 Identities=26% Similarity=0.495 Sum_probs=59.9
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
|+|+++.|++|++|++||+||.+.+|||++-|.||.+|+|+++++..|+.++.|+.+++++
T Consensus 1115 G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1115 GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999885
No 54
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.26 E-value=1e-06 Score=92.73 Aligned_cols=61 Identities=26% Similarity=0.489 Sum_probs=59.3
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
|.|.+++||+||.|++||.++.+|.|||+..+.+|.+|+|+.+.++.|++|..|.+|..++
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 8999999999999999999999999999999999999999999999999999999998863
No 55
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.24 E-value=2.1e-06 Score=72.68 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=53.1
Q ss_pred ceEEEEcCCCCCCCceEEEEE-EEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCe
Q 012142 89 DLVDAVVPFMGESITDGTLAK-FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~-w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~ 154 (470)
....+-|-+.+..+ -|+|.. |++++|+.|++||++++||++|+..+|.||.+|+|.++..+.++.
T Consensus 14 ~~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 14 GIATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred cEEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 35566666655553 477888 677779999999999999999999999999999999988776653
No 56
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.10 E-value=4.5e-06 Score=96.15 Aligned_cols=66 Identities=30% Similarity=0.584 Sum_probs=62.3
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|++++|+|+.|+.|.+||+-+|||.|||.|++.++.+|+| +...+||+.+.+|++|+.++.++.
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDdp 757 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDDP 757 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCCh
Confidence 569999999999999999999999999999999999999998 678999999999999999986654
No 57
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.92 E-value=1.6e-05 Score=69.05 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=44.0
Q ss_pred EEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCC
Q 012142 91 VDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG 152 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG 152 (470)
..+-|-+.+.. .-|.|+.+.. ++|++|++||++++||++|+..+|.||.+|+|.++.-+..
T Consensus 17 ~~vGiT~~aq~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 17 VRLGLTSRMQE-NLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred EEEeeCHHHHH-hcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 44444443332 1133433333 6699999999999999999999999999999999864443
No 58
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.87 E-value=5.5e-05 Score=80.02 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=59.0
Q ss_pred ceEEEEEEE-cCCCCeecCCCcEEEEEeC------------------------------------------------cee
Q 012142 103 TDGTLAKFL-KQPGDRVEMDEPIAQIETD------------------------------------------------KVT 133 (470)
Q Consensus 103 ~eg~i~~w~-v~~Gd~V~~gd~l~evEtd------------------------------------------------K~~ 133 (470)
..|.|.+++ +++||.|++||+|+++++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 459999998 9999999999999999831 113
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|.||++|+|.+..+.+|+.|..|++|+.|.+.+.
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP 245 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence 579999999999999999999999999999977654
No 59
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.82 E-value=6.5e-05 Score=76.65 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=32.8
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|.||.+|+|..+.+++|+.|..|++|+.|.+.+.
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 240 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQ 240 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCCc
Confidence 479999999999999999999999999999986554
No 60
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.81 E-value=4.4e-05 Score=66.77 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=43.0
Q ss_pred eEEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEe
Q 012142 90 LVDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~ 148 (470)
...+-|-+.+.. .-|.|+.+.. ++|++|++||++++||++|+..+|.||.+|+|.++.
T Consensus 18 ~~~vGiT~~a~~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 18 IVRLGLTSKMQE-NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred EEEEeeCHHHHH-hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 344544444433 1234444333 669999999999999999999999999999999884
No 61
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.78 E-value=4.4e-05 Score=69.46 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=51.4
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcC-CCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCC
Q 012142 90 LVDAVVPFMGESITDGTLAKFLKQ-PGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v~-~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~ 153 (470)
...|-|-++... .-|+|+.+.+. +|++|++||+++.||++|+..+|.||.+|+|.++..+.-+
T Consensus 30 ~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 30 TVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred EEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 455656555554 23788888876 8999999999999999999999999999999998766543
No 62
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.73 E-value=7.4e-05 Score=76.17 Aligned_cols=67 Identities=16% Similarity=0.282 Sum_probs=58.6
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc---------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK--------------------------------------------------- 131 (470)
..|+|.+++|++||.|++||+|+++++..
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999999998731
Q ss_pred -------------------eeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 132 -------------------VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 132 -------------------~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
-...|.||.+|+|.++.+++|+.|.+|++|+.|.+.+.
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~~ 190 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNS 190 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCCC
Confidence 02469999999999999999999999999999876543
No 63
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.71 E-value=7.7e-05 Score=75.10 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=58.4
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCce--------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~-------------------------------------------------- 132 (470)
..|+|.+++|++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 569999999999999999999999975311
Q ss_pred ---------------------eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 133 ---------------------~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
...|.||.+|+|..+.+++|+.+..|++|+.|...+
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 346999999999999999999999999999997654
No 64
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.68 E-value=0.00013 Score=65.04 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=55.4
Q ss_pred eEEEEcCCCCCCCceEEEEEEE-cCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEE---eecCCCeeC---CCC-eE
Q 012142 90 LVDAVVPFMGESITDGTLAKFL-KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL---IAKEGETVE---PGA-KI 161 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~-v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki---~v~eG~~v~---~G~-~l 161 (470)
...+-|-+.+.. .-|+|..+. .++|++|++||+++.||++|...+|.||.+|+|.++ +....+.+. -|+ -|
T Consensus 23 ~~~vGit~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl 101 (127)
T PRK01202 23 TATVGITDHAQE-QLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWL 101 (127)
T ss_pred EEEEeeCHHHHh-hcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceE
Confidence 344444444332 124444333 367999999999999999999999999999999999 554445555 454 88
Q ss_pred EEEEeCC
Q 012142 162 AVISKSG 168 (470)
Q Consensus 162 ~~i~~~~ 168 (470)
+.+...+
T Consensus 102 ~~v~~~~ 108 (127)
T PRK01202 102 FKIKPSD 108 (127)
T ss_pred EEEEeCC
Confidence 8887654
No 65
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.63 E-value=0.00013 Score=75.30 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=32.8
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|.||++|+|.++.+++|+.|..|++|+.|.+.+.
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~~ 244 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTDH 244 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCCC
Confidence 469999999999999999999999999999987654
No 66
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.50 E-value=0.00023 Score=74.86 Aligned_cols=36 Identities=14% Similarity=0.356 Sum_probs=32.9
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|.||.+|+|..+.+++|+.|..|++|+.|.+.+.
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~~ 251 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPATN 251 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCCc
Confidence 479999999999999999999999999999976654
No 67
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.48 E-value=0.00024 Score=74.41 Aligned_cols=67 Identities=15% Similarity=0.271 Sum_probs=57.2
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCce--------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~-------------------------------------------------- 132 (470)
..|+|.++++++||.|++||+|+.+++.-.
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 459999999999999999999999977311
Q ss_pred ---------------------eeEEecCCCeEEEEEeecCCCeeCCC--CeEEEEEeCCC
Q 012142 133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSGE 169 (470)
Q Consensus 133 ---------------------~~~i~sp~~G~i~ki~v~eG~~v~~G--~~l~~i~~~~~ 169 (470)
...|.||++|+|.+.++++|+.|..| ++|+.|...+.
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~~ 209 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDP 209 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecCc
Confidence 13799999999999999999999985 58998876544
No 68
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.45 E-value=0.00023 Score=72.84 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=32.1
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
..|.||++|+|..+.+.+|+.|..|++|+.|...+
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~~ 238 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTR 238 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecCC
Confidence 57999999999999999999999999999997554
No 69
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.39 E-value=0.00027 Score=52.59 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=31.9
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
++.|.+|.+|+|.++++++|+.|+.|++|+.++..+
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 467899999999999999999999999999997544
No 70
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.35 E-value=0.00049 Score=72.08 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=57.0
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc---------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK--------------------------------------------------- 131 (470)
..|.|.++++++||.|++||+|++++..-
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999998631
Q ss_pred --------------------eeeEEecCCCeEEEEEeecCCCeeCCCC--eEEEEEeCCC
Q 012142 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPGA--KIAVISKSGE 169 (470)
Q Consensus 132 --------------------~~~~i~sp~~G~i~ki~v~eG~~v~~G~--~l~~i~~~~~ 169 (470)
....|.||++|+|.+..+++|+.|.+|+ +|+.|...+.
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 207 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDP 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecCC
Confidence 1247999999999999999999999985 6888765543
No 71
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.30 E-value=0.00035 Score=62.28 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=44.2
Q ss_pred EEEEcCCCCCCCceEEEEEEE-cCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCC
Q 012142 91 VDAVVPFMGESITDGTLAKFL-KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG 152 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~w~-v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG 152 (470)
..|-|-+.+.. .-|.|..+. .++|++|++||+++.||++|+..+|.||.+|+|.++.-..-
T Consensus 23 ~~vGiT~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~ 84 (127)
T TIGR00527 23 ATVGITEFAQD-ELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALE 84 (127)
T ss_pred EEEeecHHHhh-CCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhh
Confidence 44444443332 224444332 36799999999999999999999999999999988764443
No 72
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.29 E-value=0.0006 Score=71.82 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=56.1
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc---------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK--------------------------------------------------- 131 (470)
..|+|.+++|++||.|++||+|++++...
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 34999999999999999999999997531
Q ss_pred --------------------eeeEEecCCCeEEEEEeecCCCeeCCCCe--EEEEEeCCC
Q 012142 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPGAK--IAVISKSGE 169 (470)
Q Consensus 132 --------------------~~~~i~sp~~G~i~ki~v~eG~~v~~G~~--l~~i~~~~~ 169 (470)
-...|.||++|+|.+..+++|+.|..|++ |+.|...+.
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 211 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 211 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecCc
Confidence 01359999999999999999999999985 677755443
No 73
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.23 E-value=0.00053 Score=51.02 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=26.6
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
..|+|.+|+|++||.|++||+|+++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 46999999999999999999999998754
No 74
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.15 E-value=0.00082 Score=71.28 Aligned_cols=66 Identities=23% Similarity=0.373 Sum_probs=55.5
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc---------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK--------------------------------------------------- 131 (470)
..|+|.++++++||.|++||+|+++....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 56999999999999999999999996531
Q ss_pred --------------------eeeEEecCCCeEEEEEeecCCCeeCCCC--eEEEEEeCC
Q 012142 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPGA--KIAVISKSG 168 (470)
Q Consensus 132 --------------------~~~~i~sp~~G~i~ki~v~eG~~v~~G~--~l~~i~~~~ 168 (470)
-...|.||++|+|....+++|+.|..|+ +|+.|...+
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~~ 232 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTH 232 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecCC
Confidence 0236999999999999999999999984 677775443
No 75
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.11 E-value=0.0011 Score=68.89 Aligned_cols=67 Identities=21% Similarity=0.391 Sum_probs=56.0
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc---------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK--------------------------------------------------- 131 (470)
..|.|.+|++++||.|++||+|++++...
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~ 147 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD 147 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 45999999999999999999999998731
Q ss_pred ----------------------------------eeeEEecCCCeEEEEEeecCCCeeCCC---CeEEEEEeCCC
Q 012142 132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPG---AKIAVISKSGE 169 (470)
Q Consensus 132 ----------------------------------~~~~i~sp~~G~i~ki~v~eG~~v~~G---~~l~~i~~~~~ 169 (470)
....|.||++|+|.++.+.+|+.|.+| ++|+.|...+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~~~ 222 (370)
T PRK11578 148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMST 222 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecCCc
Confidence 013799999999999999999999776 47888865543
No 76
>PRK12784 hypothetical protein; Provisional
Probab=97.11 E-value=0.0026 Score=51.22 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=59.0
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceee-EEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-DVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~-~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
-.|+|.++++.+++.|-+.++|+-|+++-... .|.--.+|.|.-+.+.+||.+..+..|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 46999999999999999999999999975554 488899999999999999999999999999764
No 77
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.89 E-value=0.0023 Score=65.23 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=29.2
Q ss_pred EEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 135 ~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.|.||++|+|..+.+.+|+.|.. ++|+.|...+.
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~~ 239 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTSQ 239 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecCCc
Confidence 68899999999999999999986 88888875443
No 78
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.86 E-value=0.0023 Score=56.67 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=33.8
Q ss_pred EEEEEEE-cCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEee
Q 012142 105 GTLAKFL-KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (470)
Q Consensus 105 g~i~~w~-v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v 149 (470)
|.|+.+. .++|++|++|++++.||+.|...++.||.+|+|.++.-
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~ 76 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNE 76 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-G
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcc
Confidence 3343333 35589999999999999999999999999999988753
No 79
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.67 E-value=0.0015 Score=66.01 Aligned_cols=66 Identities=18% Similarity=0.432 Sum_probs=48.5
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc---------------------ee----------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------------VT---------------------------- 133 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK---------------------~~---------------------------- 133 (470)
..|.| +|+|++||+|++||+|+++++.. +.
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 106 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI 106 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence 46999 99999999999999999998731 00
Q ss_pred ------------------e----------EEecCCCeEEE-------------------------EEeecCCCeeCCCCe
Q 012142 134 ------------------I----------DVASPQAGVIQ-------------------------NLIAKEGETVEPGAK 160 (470)
Q Consensus 134 ------------------~----------~i~sp~~G~i~-------------------------ki~v~eG~~v~~G~~ 160 (470)
. .|.||++|+|. ++.+++|+.|..|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~ 186 (328)
T PF12700_consen 107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQP 186 (328)
T ss_dssp STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTC
T ss_pred HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCce
Confidence 0 29999999999 999999999999999
Q ss_pred EEEEEeCCC
Q 012142 161 IAVISKSGE 169 (470)
Q Consensus 161 l~~i~~~~~ 169 (470)
|+.|.....
T Consensus 187 l~~i~~~~~ 195 (328)
T PF12700_consen 187 LFTIADLSN 195 (328)
T ss_dssp SEEEEEESE
T ss_pred eeeeccCCc
Confidence 999976543
No 80
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.62 E-value=0.0041 Score=49.44 Aligned_cols=34 Identities=15% Similarity=0.396 Sum_probs=31.8
Q ss_pred EEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 135 ~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.|.||++|+|.++++++||.|+.|++|+.++...
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 5899999999999999999999999999998765
No 81
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.46 E-value=0.0096 Score=58.87 Aligned_cols=61 Identities=33% Similarity=0.548 Sum_probs=52.6
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|.+.. .++-||.|++||+|+.|+. .+|.||.+|+|.- ++++|-.|..|.-|+.|+.-.+
T Consensus 171 ~~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~V~~G~Ki~dIDPR~~ 231 (256)
T TIGR03309 171 ADGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLTVTEGLKIGDVDPRGE 231 (256)
T ss_pred CCeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCCcCCCCEEEEECCCCC
Confidence 3455544 8999999999999999975 7999999999965 7899999999999999987654
No 82
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.35 E-value=0.0044 Score=55.25 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=41.8
Q ss_pred eEEEEcCCCCCCCceEEEEEE-EcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEe
Q 012142 90 LVDAVVPFMGESITDGTLAKF-LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w-~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~ 148 (470)
...|-|-+.... .-|.|+-+ +.++|++|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus 25 ~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 25 TATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred EEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 344444443333 22444443 24678899999999999999999999999999997754
No 83
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.05 E-value=0.013 Score=50.31 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=39.1
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeec
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~ 150 (470)
-|.-.+-.|++||+|++||.|++.+. -+...|-|+.+|+|..|.-.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeee
Confidence 35566789999999999999999974 66889999999999987543
No 84
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.05 E-value=0.019 Score=60.11 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=30.0
Q ss_pred EEecCCCeEEEEEee-cCCCeeCCCCeEEEEEeCC
Q 012142 135 DVASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 135 ~i~sp~~G~i~ki~v-~eG~~v~~G~~l~~i~~~~ 168 (470)
.|.||.+|+|..+.+ .+|+.|..|++|+.|.+..
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~~ 307 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPED 307 (423)
T ss_pred EEECCCCcEEEEEEEEccCceecCCCeeEEEecCC
Confidence 599999999999876 7999999999999997543
No 85
>PRK06748 hypothetical protein; Validated
Probab=95.93 E-value=0.014 Score=48.16 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=30.8
Q ss_pred EEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 135 ~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
-|.||..|+|.++++++||.|..|++|+.+++
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 48899999999999999999999999999998
No 86
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.53 E-value=0.032 Score=44.06 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=31.7
Q ss_pred EEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 135 ~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.|.||.+|+|.++++++||.|..|++|+.++...
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k 36 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK 36 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 5789999999999999999999999999998765
No 87
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.50 E-value=0.049 Score=55.41 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=48.3
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe---CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET---DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt---dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
+=+....++.||.|++||+|++|=. +....++.||.+|+|.- ....-.|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYPLVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCCeecCCceEEEe
Confidence 5577788999999999999999954 45678899999999954 4555689999999876
No 88
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.33 E-value=0.03 Score=42.79 Aligned_cols=32 Identities=34% Similarity=0.675 Sum_probs=29.8
Q ss_pred EecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 136 VASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 136 i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
+.||.+|+|.++++++|+.|+.|++|+.++..
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 33 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM 33 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 68999999999999999999999999999754
No 89
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.30 E-value=0.028 Score=50.90 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=33.5
Q ss_pred eeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 132 ~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
....|.||..|++-+++|++||.|..||+||+|+...
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMK 105 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMK 105 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeee
Confidence 3567999999999999999999999999999998643
No 90
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.19 E-value=0.073 Score=53.76 Aligned_cols=58 Identities=24% Similarity=0.340 Sum_probs=45.6
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe--CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt--dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
+=+.++.++.||.|++||+|++|.. .....+|.||.+|+|. .....-.|..|+.|+.|
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~--~~~~~~~v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI--GRNNLPLVNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE--EecCCCccCCCCEEEEe
Confidence 3345679999999999999999964 2334789999999994 34555688899998876
No 91
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.12 E-value=0.064 Score=55.99 Aligned_cols=59 Identities=24% Similarity=0.434 Sum_probs=47.6
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEe----CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEt----dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
.|=+.+.+++.||.|++||+|++|-. +....+|.||.+|+|. .....-.|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~--~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLF--ARASRRFVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEE--EecCCccccCCCeEEEe
Confidence 35677889999999999999999844 3445557999999984 45667789999999876
No 92
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.02 E-value=0.09 Score=53.86 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=47.6
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe----CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt----dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~--~~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA--RRPPGLVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE--eeCCCccCCCCEEEEEe
Confidence 5577789999999999999999865 35567899999999953 33445688999998874
No 93
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=94.79 E-value=0.043 Score=54.47 Aligned_cols=42 Identities=31% Similarity=0.552 Sum_probs=35.3
Q ss_pred EEEEEcCCCCeecCCCcEEEEEeCce--eeEEecCCCeEEEEEeecC
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIETDKV--TIDVASPQAGVIQNLIAKE 151 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evEtdK~--~~~i~sp~~G~i~ki~v~e 151 (470)
.-+.+|+|||+|++||+|++ ||- .+-+.||.+|+|.+|.--+
T Consensus 40 ~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 40 KPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred CccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCC
Confidence 35779999999999999998 665 5668999999999876633
No 94
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=94.50 E-value=0.12 Score=53.25 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=47.2
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe----CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt----dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
+=+....++.||.|++||+|++|=. .....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 4456688999999999999999954 34577899999999965 4555689999999876
No 95
>PRK07051 hypothetical protein; Validated
Probab=94.49 E-value=0.08 Score=43.10 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=24.7
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
.+|+|.+|++++||.|+.||+|++++
T Consensus 54 ~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 54 AAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 67999999999999999999999986
No 96
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.23 E-value=0.089 Score=47.14 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=33.7
Q ss_pred eeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 132 ~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
-...|.||.+|+|.++++++||.|..|++|+.++...
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamK 96 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMK 96 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccC
Confidence 3667999999999999999999999999999998654
No 97
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.07 E-value=0.083 Score=44.53 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=25.9
Q ss_pred EecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 136 VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 136 i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|.||.+|+|..+.+++|+.|..|++|+.|...+
T Consensus 2 i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 34 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTD 34 (105)
T ss_pred EECCCCEEEEEEeCCCCCEECCCCEEEEEEccc
Confidence 678888888888888888888888888876653
No 98
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.76 E-value=0.058 Score=53.78 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=24.9
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
..|.++..|+|.+++|++|+.|+.|++|+.|++..
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 57889999999999999999999999999997644
No 99
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=93.69 E-value=0.098 Score=41.91 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=29.3
Q ss_pred EEecCCCeEEEE------EeecCCCeeCCCCeEEEEEeCCC
Q 012142 135 DVASPQAGVIQN------LIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 135 ~i~sp~~G~i~k------i~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
+|.+|..|...+ +++++||.|..|++|+.|+...-
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~ 42 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKM 42 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCcc
Confidence 577777776555 99999999999999999987654
No 100
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.63 E-value=0.12 Score=47.49 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=32.8
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
...|.||..|+|.++++++||.|..|++|+.++...
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK 119 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK 119 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence 356999999999999999999999999999997654
No 101
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.56 E-value=0.12 Score=53.21 Aligned_cols=41 Identities=32% Similarity=0.414 Sum_probs=35.3
Q ss_pred EEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 125 AQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 125 ~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
+.||++ .+.|.++.+|+|.++++++||.|..|++|+.|+..
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 344444 68899999999999999999999999999999754
No 102
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.55 E-value=0.17 Score=51.12 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=40.4
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEe--CceeeEEecCCCeEEEEEeecCCCeeCCCCeE
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQNLIAKEGETVEPGAKI 161 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEt--dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l 161 (470)
.+=+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+. ..-.|..|+.|
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 35567788999999999999999833 3446789999999885433 33456666654
No 103
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=93.51 E-value=0.25 Score=58.95 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=59.1
Q ss_pred CceEEEEcCCCCCCCce----------EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCC
Q 012142 88 GDLVDAVVPFMGESITD----------GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEP 157 (470)
Q Consensus 88 ~~~~~i~~P~lg~~~~e----------g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~ 157 (470)
|....|++-.+|+.-.+ |...++.|++++.+..++.....+.. -...|.||..|+|.++++++||.|+.
T Consensus 1020 g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~ 1098 (1143)
T TIGR01235 1020 GKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNK 1098 (1143)
T ss_pred CcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCC
Confidence 44555555566654332 46677788888887777665444322 24569999999999999999999999
Q ss_pred CCeEEEEEeCCC
Q 012142 158 GAKIAVISKSGE 169 (470)
Q Consensus 158 G~~l~~i~~~~~ 169 (470)
|++|+.++...-
T Consensus 1099 Gd~L~~iEamKm 1110 (1143)
T TIGR01235 1099 GDPLVVLEAMKM 1110 (1143)
T ss_pred CCEEEEEEecce
Confidence 999999987553
No 104
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.03 E-value=0.11 Score=52.81 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=33.0
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.+.|.|+.+|+|.++++++||.|..|++|+.|+..+
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTN 77 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchH
Confidence 678999999999999999999999999999997544
No 105
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.01 E-value=0.15 Score=52.03 Aligned_cols=43 Identities=26% Similarity=0.504 Sum_probs=36.6
Q ss_pred EEEeCceeeEEecCCC---eEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 126 QIETDKVTIDVASPQA---GVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 126 evEtdK~~~~i~sp~~---G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.|+...-...|.++.+ |+|.+++|++||.|..|++|+.|+...
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence 4555555667889999 999999999999999999999997653
No 106
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=92.80 E-value=0.15 Score=46.81 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=35.2
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeE-EecCCCeEEEEEe
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQNLI 148 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~-i~sp~~G~i~ki~ 148 (470)
-||..+-..+.+||+|.+||.|+-+.|-|.++- +.||.+|+|.=+.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 568888899999999999999999999999765 9999999986544
No 107
>COG3608 Predicted deacylase [General function prediction only]
Probab=92.66 E-value=0.36 Score=49.68 Aligned_cols=60 Identities=28% Similarity=0.507 Sum_probs=47.3
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEe---CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIET---DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEt---dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
++=+++.+|+.||+|++||.|+.|=. .+...||.|+.+|+|...... -.+..|+.++.+.
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~--~~v~~Gdl~~~v~ 325 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL--RLVQPGDLLKVVG 325 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec--cccCCCCeeeeec
Confidence 46688999999999999999998865 488999999999999765422 2556666666554
No 108
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=92.66 E-value=3.2 Score=44.48 Aligned_cols=176 Identities=18% Similarity=0.229 Sum_probs=89.1
Q ss_pred EEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhC--Cc-------cceEE--eCCeEEEe-----CCc
Q 012142 269 TFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQ--PV-------VNAVI--DGDDIIYR-----DYI 332 (470)
Q Consensus 269 ~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~--P~-------lNa~~--~~~~i~~~-----~~i 332 (470)
....++-+.+.++++..++ + +.|++.+|.-+++.||.+. |. ++... +..+++.. +..
T Consensus 252 ~~~~i~~~~~~~ll~~CR~-----~--~~TlT~~L~al~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~~p~~~~~~~~~ 324 (480)
T PF07247_consen 252 RSLSISPEELKKLLKACRK-----H--GTTLTALLHALIALALSKVQLPKPKSEKSSFKISTPVNLRRFLPEDSELRDEY 324 (480)
T ss_pred EEEEECHHHHHHHHHHHHH-----c--CCCHHHHHHHHHHHHHHhhhcccccccCceEEEEeeeeCCCCCCccccccccc
Confidence 3556777777676665543 3 6799999999999999963 22 12111 11111111 112
Q ss_pred cEEEEEecCCc--eEEeeEcCC-CCCCHHHHHHHHHHHHHHHh-cCC-------------CCccc-----------cCCc
Q 012142 333 DISFAVGTKKG--LVVPVIRNS-ERMNFAEIEKEISTLAKKAN-DGS-------------ISIDE-----------MAGG 384 (470)
Q Consensus 333 nIgiAv~t~~G--L~vPvI~~a-~~~sl~eIa~~l~~l~~~ar-~g~-------------L~~~d-----------~~gg 384 (470)
..|..|...+- .+.++-.+. ....+-++++++++-..+.. ++. +...| ..++
T Consensus 325 ~~g~~v~~~~~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~r~~ 404 (480)
T PF07247_consen 325 SYGNFVGGIDFSYSISPVSASRGSSENFWELARQIQKEIKESIKNGKSLNGVGFLMNDFLLKYVDIWDFFKSKIGKPRRS 404 (480)
T ss_pred cceeEEEccceeeecccccccccchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHhccCCHHHHHHhhcCCCCCC
Confidence 23444432211 122222111 12356788888766555432 211 01111 2478
Q ss_pred cEEEecCCCCCC-c---c-e-eeeeCCCCeEEEEecceeeeEEE--eCCeEEEEcEEEEEEEecccccChHHH-HHHHHH
Q 012142 385 TFTISNGGVYGS-L---L-S-TPIINPPQSAILGMHSIVNRPMV--VGGNVVPRPMMYIALTYDHRLIDGREA-VFFLRR 455 (470)
Q Consensus 385 TftISNlG~~G~-~---~-~-~pii~ppq~aIL~vG~i~~~pv~--~~g~i~~~~~m~ltls~DHRviDGa~a-a~Fl~~ 455 (470)
||.|||+|.+.. . + . .-+...++.. +|..-.-=++ .+|. |++++|+=.=+++-.+. -.|++.
T Consensus 405 t~evSNLG~~~~~~~~~~~I~~~~Fsq~~~~---~~~~f~~~viS~~~G~------L~i~~s~~~~~~~~~~~~~~~~~~ 475 (480)
T PF07247_consen 405 TFEVSNLGVFDFEENGKWKIEDMVFSQSAGV---IGSAFSFNVISTKGGG------LNISISWQEGIVEDEEMEDEFMEL 475 (480)
T ss_pred cEEEEeCCcccCCCCCCeEEEEEEEeCCCCC---CcCCEEEEEEEcCCCc------eEEEEEEeCCcccccchHHHHHHH
Confidence 999999999873 1 1 0 1111111110 1211111111 2343 66888877777776666 589998
Q ss_pred HHHHh
Q 012142 456 IKDIV 460 (470)
Q Consensus 456 lk~~L 460 (470)
|++.|
T Consensus 476 ~~~~~ 480 (480)
T PF07247_consen 476 FKQNL 480 (480)
T ss_pred HHhhC
Confidence 88765
No 109
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=92.40 E-value=0.26 Score=52.43 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=47.3
Q ss_pred EEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|.-..++.|+.-..-+....|+.. -.+.|.++.+|+|.++++++|+.|+.|++|+.|+..+
T Consensus 62 V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 62 VQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred eEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHH
Confidence 333445555544444566788874 5788999999999999999999999999999997543
No 110
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=92.08 E-value=0.32 Score=50.94 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=45.7
Q ss_pred EcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.++.|+-...-+..+.|+..+ ..+|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 445555555555677887665 78899999999999999999999999999999754
No 111
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=92.03 E-value=0.26 Score=49.51 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=34.7
Q ss_pred EEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 126 QIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 126 evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.|+..+ +..|.+|.+|+|.++++++|+.|..|++|+.++..
T Consensus 20 ~v~~~~-~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 20 SLEAVD-EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred EEEEee-EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence 444433 56899999999999999999999999999999644
No 112
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=91.91 E-value=0.17 Score=54.45 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=37.1
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEe
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~ 148 (470)
.|.--+..|++||+|++||+|++-... ..+.+.||.+|+|..|.
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAIN 80 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEe
Confidence 355567899999999999999985532 57889999999999994
No 113
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=91.68 E-value=0.37 Score=50.13 Aligned_cols=56 Identities=20% Similarity=0.383 Sum_probs=41.6
Q ss_pred EEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 110 FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 110 w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
+.++.|+....=..-+.|+..+ ...|.++.+|.|.++++++||.|+.|++|+.++.
T Consensus 39 ~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 39 LIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 3444444333223445566554 5689999999999999999999999999999954
No 114
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.63 E-value=0.33 Score=52.22 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=34.7
Q ss_pred EEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 127 IETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 127 vEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|+.+.-...|.++..|+|.+++|+|||.|+.|++|+.++...
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 333333556789999999999999999999999999997654
No 115
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.59 E-value=0.29 Score=51.19 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=37.6
Q ss_pred EEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 126 QIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 126 evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.|........|.++.+|+|.+++|++||.|+.|++|+.++....
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccchh
Confidence 45566667778899999999999999999999999999976543
No 116
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=91.58 E-value=0.19 Score=50.67 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=29.6
Q ss_pred cEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 123 PIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 123 ~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.-+.|+. -+..|.++.+|+| ++++++|+.|..|++|+.++..+
T Consensus 13 ~~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~ 55 (328)
T PF12700_consen 13 ASGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSD 55 (328)
T ss_dssp EEEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred EEEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence 3445555 4677899999999 99999999999999999998654
No 117
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=91.13 E-value=0.32 Score=51.57 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=33.0
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
...|.++.+|+|.+++|++||.|+.|++|+.|+....
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHHH
Confidence 4478899999999999999999999999999976543
No 118
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=91.12 E-value=0.25 Score=50.43 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=31.8
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+.|.++.+|.|.++++++||.|+.|++|+.++..+
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHH
Confidence 55899999999999999999999999999997543
No 119
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=91.05 E-value=0.25 Score=52.04 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=33.3
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.+.|.++.+|+|.++++++||.|+.|++|+.|+..+
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~ 96 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTD 96 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcHH
Confidence 778999999999999999999999999999997644
No 120
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=90.92 E-value=0.44 Score=49.94 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=43.9
Q ss_pred EcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.++.|+.-..-...+.|+.++ ..+|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAYR-QAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEecccceEEEEEEEEEee-EEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 444454333444567777654 67999999999999999999999999999999644
No 121
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=90.83 E-value=0.16 Score=50.63 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=22.4
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceee
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI 134 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~ 134 (470)
..|.|.+++|++||.|++||+|+++..-....
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~a 39 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPTDYEA 39 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--HHHHH
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEeeccch
Confidence 46999999999999999999999998644333
No 122
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=90.69 E-value=0.33 Score=52.22 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=36.1
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~ 148 (470)
|.--+..|++||+|++||+|++-... ....+.||.+|+|+.|.
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 45566899999999999999975433 47889999999999994
No 123
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=90.67 E-value=0.32 Score=49.74 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=32.5
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.+.|.++.+|+|.++++++||.|+.|++|+.++..
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 66899999999999999999999999999999654
No 124
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=90.23 E-value=0.54 Score=53.29 Aligned_cols=43 Identities=23% Similarity=0.481 Sum_probs=35.4
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~ 148 (470)
|.-.+..|++||+|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 445567999999999999999653 3357899999999998863
No 125
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=90.21 E-value=0.31 Score=50.26 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=34.3
Q ss_pred EEcCCCCeecCCCcEEEEEeCce--eeEEecCCCeEEEEEeecCCC
Q 012142 110 FLKQPGDRVEMDEPIAQIETDKV--TIDVASPQAGVIQNLIAKEGE 153 (470)
Q Consensus 110 w~v~~Gd~V~~gd~l~evEtdK~--~~~i~sp~~G~i~ki~v~eG~ 153 (470)
..|++||.|++||+|+| ||- -+-++||.+|+|..|.-.+-.
T Consensus 43 mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~KR 85 (447)
T COG1726 43 MKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGEKR 85 (447)
T ss_pred ceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeecccce
Confidence 47999999999999998 665 567999999999988765543
No 126
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=90.07 E-value=5.5 Score=42.17 Aligned_cols=165 Identities=12% Similarity=0.079 Sum_probs=86.1
Q ss_pred EEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEecCC-----
Q 012142 268 TTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK----- 342 (470)
Q Consensus 268 ~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t~~----- 342 (470)
+...++++..|.++. +.. +.|++++++-|++.+|.++ ++.. ++ .....+.|++.|+...
T Consensus 231 ~~~~~~~~~~l~~~a--------~~~--g~T~ndvllaa~~~al~~~--~~~~--~~--~~~~~i~~~~pv~~R~~~~~~ 294 (446)
T TIGR02946 231 FAAQSLPLADVKAVA--------KAF--GVTINDVVLAAVAGALRRY--LEER--GE--LPDDPLVAMVPVSLRPMEDDS 294 (446)
T ss_pred EEeeccCHHHHHHHH--------HHh--CCCHHHHHHHHHHHHHHHH--HHHc--CC--CCCCceEEEEeeeccccccCC
Confidence 345667766654432 122 5699999999999999886 2221 11 1223366777666321
Q ss_pred ------ceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCC-------------CCcc-------------ccCCccEEEec
Q 012142 343 ------GLVVPVIRNSERMNFAEIEKEISTLAKKANDGS-------------ISID-------------EMAGGTFTISN 390 (470)
Q Consensus 343 ------GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~-------------L~~~-------------d~~ggTftISN 390 (470)
|++...+. .+..+..+-..++++-...+++.. +-|. ....-|++|||
T Consensus 295 ~~~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SN 373 (446)
T TIGR02946 295 EGGNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISN 373 (446)
T ss_pred CCCCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeC
Confidence 22222222 223334444455555555554431 1110 01134889999
Q ss_pred CCCCCC------c---ceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhc
Q 012142 391 GGVYGS------L---LSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 461 (470)
Q Consensus 391 lG~~G~------~---~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE 461 (470)
++.... . ...++.+++.-..|+++-.. .+| .+.+++++|-.++.. ..+|...|.+.|+
T Consensus 374 vpg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~s-----y~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~l~ 440 (446)
T TIGR02946 374 VPGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTS-----YNG------QLDFGLLADRDAVPD--PQELADALEAALE 440 (446)
T ss_pred CCCCCcccEecCeeEEEeeccccccCCCeEEEEEEe-----cCC------eEEEEEeechhhCCC--HHHHHHHHHHHHH
Confidence 966331 1 12222222111122332211 234 467999999998874 7778888887776
Q ss_pred C
Q 012142 462 D 462 (470)
Q Consensus 462 ~ 462 (470)
.
T Consensus 441 ~ 441 (446)
T TIGR02946 441 E 441 (446)
T ss_pred H
Confidence 4
No 127
>PF13437 HlyD_3: HlyD family secretion protein
Probab=89.67 E-value=0.75 Score=38.63 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=25.3
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEe
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEt 129 (470)
..|.|..+.+++|+.|.+|++|++|..
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence 679999999999999999999999975
No 128
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=89.60 E-value=1.3 Score=49.41 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=33.0
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
-+|.||..|+|.++++++||.|+.|++|+.++...-
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamKm 561 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMKM 561 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecce
Confidence 369999999999999999999999999999987654
No 129
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=89.22 E-value=0.74 Score=48.53 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=38.4
Q ss_pred CcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 122 EPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 122 d~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
...+.|+... .++|.++.+|+|.++++++||.|+.|++|+.|+..+
T Consensus 55 ~~~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~ 100 (397)
T PRK15030 55 ELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT 100 (397)
T ss_pred EEEEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence 3445666533 788999999999999999999999999999997543
No 130
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=89.16 E-value=0.51 Score=43.57 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=24.6
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
..|+|.+|+++.||.|..||+|++|+
T Consensus 131 ~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 131 VAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 68999999999999999999999985
No 131
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=89.10 E-value=0.56 Score=43.21 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=24.6
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
.+|+|.+|+++.||.|..||+|++|+
T Consensus 130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 130 KSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 68999999999999999999999885
No 132
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=89.07 E-value=0.42 Score=51.23 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=35.9
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~ 148 (470)
|.-.+-.|++||+|++||+|++-+ ......|.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 334567999999999999999983 4468999999999998864
No 133
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=88.94 E-value=0.56 Score=50.57 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=26.1
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
.+|+|.+|++++||.|..||+|++||.+
T Consensus 141 ~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 141 ASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 6799999999999999999999999854
No 134
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=88.66 E-value=0.38 Score=38.91 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=18.7
Q ss_pred EEEEEcCCCCeecCCCcEEEEEeC
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
=+.++++.||.|++||+||+|=++
T Consensus 33 Gi~l~~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 33 GIELHKKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp EEEESS-TTSEEBTTSEEEEEEES
T ss_pred CeEecCcCcCEECCCCeEEEEEcC
Confidence 356789999999999999988654
No 135
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=88.35 E-value=0.75 Score=46.83 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
+.++|..| ..|+|.++++++||.|..|++|+.++.+.
T Consensus 44 ~~~~~~a~------~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 44 ITNEVEAP------AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred eeEEEecC------CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 34556666 78999999999999999999999998754
No 136
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=88.34 E-value=0.7 Score=46.11 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=24.8
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
.+|+|.+|++++||.|..||+|++||
T Consensus 248 ~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 248 QSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEec
Confidence 68999999999999999999999986
No 137
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=88.24 E-value=0.75 Score=45.01 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=32.5
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.+.|.||++|+|..+.+.+|+.|..|++|+.|.+.+.
T Consensus 88 ~~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~~ 124 (265)
T TIGR00999 88 YVEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLGA 124 (265)
T ss_pred eEEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCCc
Confidence 3468999999999999999999999999999876543
No 138
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=88.11 E-value=0.98 Score=47.95 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=42.6
Q ss_pred cCCCCeecCCCcEEEEEeCc-eeeEEecCCCeEEEEEe-ecCCCeeCCCCeEEEEEeCC
Q 012142 112 KQPGDRVEMDEPIAQIETDK-VTIDVASPQAGVIQNLI-AKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 112 v~~Gd~V~~gd~l~evEtdK-~~~~i~sp~~G~i~ki~-v~eG~~v~~G~~l~~i~~~~ 168 (470)
++.++.-..-+..+.|+.+. -...|.++.+|+|.+++ +.+||.|..|++|+.|+..+
T Consensus 101 v~~~~~~~~~~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spe 159 (409)
T PRK09783 101 VTRGPLTFAQTFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD 159 (409)
T ss_pred EEEeeccceEEEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHH
Confidence 33444333334456777553 36689999999999998 99999999999999997543
No 139
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=88.08 E-value=1.5 Score=44.51 Aligned_cols=43 Identities=16% Similarity=0.412 Sum_probs=30.3
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeC--ceeeEEecCCCeEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETD--KVTIDVASPQAGVIQNL 147 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtd--K~~~~i~sp~~G~i~ki 147 (470)
+=+.+..++.||.|++||.|++|-.- ....++.||.+|+|.-+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 44666778888888888888887431 22456788888887544
No 140
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=86.97 E-value=1.4 Score=56.00 Aligned_cols=42 Identities=19% Similarity=0.402 Sum_probs=27.0
Q ss_pred EEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCC
Q 012142 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG 152 (470)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG 152 (470)
.++|++|+.|++||.||+.. --+..|-+..+|+|.-.-+.+|
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd--p~~~piisE~~G~v~f~d~~~g 2464 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD--PYTLPIITEKTGTVSYQDLKDG 2464 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc--CCCcceEeecceEEEEEEEecc
Confidence 57899999999999999863 3344444555554443333333
No 141
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=86.32 E-value=0.51 Score=43.52 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=36.5
Q ss_pred cCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCC
Q 012142 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG 152 (470)
Q Consensus 112 v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG 152 (470)
=++|-.|.+||.++-||+-|+.-+|.+|.+|.|.+|.-+-.
T Consensus 88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~ 128 (172)
T KOG3373|consen 88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLE 128 (172)
T ss_pred CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccc
Confidence 46888999999999999999999999999999998865433
No 142
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=85.94 E-value=1.9 Score=43.01 Aligned_cols=47 Identities=23% Similarity=0.455 Sum_probs=37.4
Q ss_pred CCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 120 MDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 120 ~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.-.....++. .-..++.++..|.|.++++++||.|..|++|+.++..
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS 100 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence 3344445555 3344788889999999999999999999999999763
No 143
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=85.71 E-value=2.7 Score=41.98 Aligned_cols=60 Identities=32% Similarity=0.442 Sum_probs=48.6
Q ss_pred EEEEEEEcCCCCeecCCCcE--EEEE-eC-ceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPI--AQIE-TD-KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l--~evE-td-K~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
+=+....++.||.|++||+| .++- .. -...++.+|.+|+| +...+.-.|..|+.|+.+..
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~~ 291 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVAK 291 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEec
Confidence 45678899999999999999 5553 22 33568999999999 56788889999999998853
No 144
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=84.88 E-value=1.5 Score=48.85 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=33.8
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCCc
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~~ 170 (470)
..|.||..|+|.++++++||.|+.|++|+.++...-+
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme 554 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKME 554 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccce
Confidence 4799999999999999999999999999999876543
No 145
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=84.61 E-value=1.9 Score=41.01 Aligned_cols=53 Identities=21% Similarity=0.336 Sum_probs=41.8
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIA 162 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~ 162 (470)
..|.. ++++|+.+++||.+.-++-. .++++--|.+ .++.+++|+.|..|+.|.
T Consensus 130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 34444 46899999999999999977 5666666665 377899999999999664
No 146
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.52 E-value=2.5 Score=37.98 Aligned_cols=45 Identities=24% Similarity=0.474 Sum_probs=39.8
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeE-EecCCCeEEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQNL 147 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~-i~sp~~G~i~ki 147 (470)
.||-++---+..|++|.+||+++-|.|-|.++- +++|.+|++.-+
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 678888888999999999999999999999776 799999998543
No 147
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=84.49 E-value=0.83 Score=49.50 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=36.9
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~ 148 (470)
|.=...+|++||+|.+||+|.+=+. ....+-||.+|+|.+|.
T Consensus 42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 3335679999999999999998875 88999999999999987
No 148
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=84.15 E-value=1.9 Score=33.73 Aligned_cols=33 Identities=36% Similarity=0.597 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEE
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQI 127 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~ev 127 (470)
+..++.-| .+|+|++|++++|+.|..|+.|+.|
T Consensus 41 ~~~~i~ap------~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 41 ATSDVEAP------KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred eEEEEEcC------CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 45556666 6899999999999999999999874
No 149
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=83.98 E-value=3.2 Score=46.32 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=33.4
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
...|.||.+|+|.++.+++||.|+.|++|+.++...-
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKm 558 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKM 558 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEecccc
Confidence 3679999999999999999999999999999976543
No 150
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=83.86 E-value=1.6 Score=46.68 Aligned_cols=29 Identities=31% Similarity=0.682 Sum_probs=26.6
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
.+|+|.++++++||.|..|++|++|+...
T Consensus 94 ~~G~v~~i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 94 ASGVITKIFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence 67999999999999999999999998643
No 151
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=83.82 E-value=0.97 Score=37.43 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=18.7
Q ss_pred EEEEEcCCCCeecCCCcEEEEEe
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIET 129 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evEt 129 (470)
-++|++++||.|++||+|++++-
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEe
Confidence 45699999999999999999984
No 152
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=83.81 E-value=2.6 Score=43.77 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=26.2
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
..|+|.+++|++||+|+.|+.|+.|+..
T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CcceeeEEecCCCCcccCCceeEEecCC
Confidence 5699999999999999999999999876
No 153
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=83.19 E-value=2.3 Score=40.92 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=41.4
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKI 161 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l 161 (470)
+.|.. ++++|+.+++||.+..++-. .++++--|.+ .++.+++||.|..|+.+
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getv 201 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETV 201 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEE
Confidence 45554 47999999999999999977 4666666665 27899999999999844
No 154
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=83.14 E-value=1.7 Score=48.49 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=33.3
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
...|.||..|+|.++++++||.|+.|++|+.++...-
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKm 560 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKM 560 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCce
Confidence 4479999999999999999999999999999976553
No 155
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.07 E-value=1 Score=48.50 Aligned_cols=31 Identities=3% Similarity=0.092 Sum_probs=27.0
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCcee
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVT 133 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~ 133 (470)
..|.|.+++|++||.|++||+|+++......
T Consensus 66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~~ 96 (457)
T TIGR01000 66 SNNAIKENYLKENKFVKKGDLLVVYDNGNEE 96 (457)
T ss_pred CCcEEEEEEcCCCCEecCCCEEEEECchHHH
Confidence 4599999999999999999999999865443
No 156
>PRK12784 hypothetical protein; Provisional
Probab=83.03 E-value=1.7 Score=35.38 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=35.1
Q ss_pred Cceee-EEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCCc
Q 012142 130 DKVTI-DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (470)
Q Consensus 130 dK~~~-~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~~ 170 (470)
||..+ +|.||+-|+|.|+++.|++.|..=++|+.|+..+..
T Consensus 1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~ 42 (84)
T PRK12784 1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGE 42 (84)
T ss_pred CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCc
Confidence 34444 489999999999999999999999999999877653
No 157
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=82.79 E-value=1.7 Score=46.11 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=31.0
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
..|.||++|+|..+.+.+|+.|..|++|+.|...
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 287 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEVE 287 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEcc
Confidence 4699999999999999999999999999999543
No 158
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=81.46 E-value=2.3 Score=45.23 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=27.0
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
.+|+|.++++++||.|..|++|++||.+.
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 52 AAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 78999999999999999999999998654
No 159
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=80.41 E-value=3.2 Score=30.94 Aligned_cols=32 Identities=41% Similarity=0.586 Sum_probs=26.5
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEE
Q 012142 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQI 127 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~ev 127 (470)
...+..| ..|++.++++++|+.+..|++|+++
T Consensus 43 ~~~i~a~------~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 43 TVEVEAP------AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEEECC------CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 3455555 5688999999999999999999874
No 160
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=80.28 E-value=2.3 Score=51.22 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=33.3
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
...|.||..|+|.++++++||.|+.|++|+.++...-
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~ 1168 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKM 1168 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCe
Confidence 4569999999999999999999999999999976553
No 161
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=80.18 E-value=2.4 Score=45.09 Aligned_cols=38 Identities=34% Similarity=0.531 Sum_probs=31.7
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCcee
Q 012142 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVT 133 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~ 133 (470)
.++|.-| .+|+|.++++++||+|..|++|+.+++.-..
T Consensus 45 ~~EV~ap------~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~~ 82 (404)
T COG0508 45 TMEVPAP------DAGVLAKILVEEGDTVPVGAVIARIEEEGAD 82 (404)
T ss_pred eEEecCC------CCeEEEEEeccCCCEEcCCCeEEEEecCCCc
Confidence 3455555 7899999999999999999999999976443
No 162
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=79.90 E-value=2.9 Score=44.51 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=26.4
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
.+|+|.+|++++||.|..|++|++|+.+
T Consensus 50 ~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 50 ADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 7899999999999999999999999865
No 163
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=79.64 E-value=1.6 Score=43.64 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=25.8
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEe
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEt 129 (470)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 569999999999999999999999997
No 164
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=78.81 E-value=2.4 Score=44.27 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=32.5
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|.||.+|+|.+..+.+|+.|.+|++|+.+.+.+.
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~~ 244 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLDS 244 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEecccc
Confidence 349999999999999999999999999999877554
No 165
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=78.76 E-value=1.7 Score=38.71 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.2
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeC
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
+|+=.++++++||+|++||+|+++--+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 367789999999999999999998644
No 166
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=77.80 E-value=1.8 Score=38.39 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.1
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
|+=.+++|++||+|++||+|+++.-++
T Consensus 79 G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 79 GEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 666889999999999999999987543
No 167
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=77.74 E-value=2.9 Score=45.85 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=31.5
Q ss_pred EEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 135 ~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.+.||-.|+|..+.|++|+.|..|++|+.++...
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMK 610 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMK 610 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeEehh
Confidence 4899999999999999999999999999998654
No 168
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=77.56 E-value=3.3 Score=43.21 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=32.9
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.+.|.+..+|+|.++.|+.++.|+.|++|+.|++.+-
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~y 89 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRDY 89 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcHHH
Confidence 3558899999999999999999999999999976554
No 169
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=77.02 E-value=3.9 Score=38.29 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.1
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
+|+=.+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 3677899999999999999999987653
No 170
>PRK12999 pyruvate carboxylase; Reviewed
Probab=76.48 E-value=5.9 Score=47.68 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=33.3
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
...|.||..|+|.++++++||.|+.|++|+.++...-
T Consensus 1076 ~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamKm 1112 (1146)
T PRK12999 1076 PGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKM 1112 (1146)
T ss_pred CceEeCCceEEEEEEEcCCCCEECCCCEEEEEEcccc
Confidence 3569999999999999999999999999999986543
No 171
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=76.41 E-value=4.2 Score=43.38 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=26.9
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
.+|+|.+|++++||.|..|++|++|+.+.
T Consensus 48 ~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 48 YKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 77999999999999999999999998665
No 172
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=75.73 E-value=3 Score=46.75 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=22.0
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
+|+=-+.+|++||+|++||+|+++.-++
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~ 569 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDK 569 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHH
Confidence 4666788888888888888888886643
No 173
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=73.26 E-value=2.2 Score=38.36 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=21.5
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
+|+-.+|+|++||+|++||+|+++.-++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 4667899999999999999999987554
No 174
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=72.34 E-value=8 Score=43.40 Aligned_cols=33 Identities=30% Similarity=0.557 Sum_probs=30.3
Q ss_pred EecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 136 VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 136 i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|-+|-.|+|.+|.+++|+.|+.|++|+.+....
T Consensus 1109 igAPMpG~vieikvk~G~kV~Kgqpl~VLSAMK 1141 (1176)
T KOG0369|consen 1109 IGAPMPGTVIEIKVKEGAKVKKGQPLAVLSAMK 1141 (1176)
T ss_pred ccCCCCCceEEEEEecCceecCCCceEeeecce
Confidence 789999999999999999999999999987543
No 175
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=71.16 E-value=6.4 Score=37.60 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=43.1
Q ss_pred ceEEEEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEE
Q 012142 103 TDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (470)
Q Consensus 103 ~eg~i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~ 163 (470)
.-|+|+-+.. ++|+.|++||.+..++= =.++.+--|.+-. .+..+++|+.|..|+.|++
T Consensus 143 ~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~-~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 143 LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKI-FEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCc-cccccCCCCEEEeeeEEeC
Confidence 3466666654 69999999999999986 3344443333322 2889999999999999874
No 176
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=70.37 E-value=9.7 Score=35.70 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.0
Q ss_pred EEeecCCCeeCCCCeEEEEEe
Q 012142 146 NLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 146 ki~v~eG~~v~~G~~l~~i~~ 166 (470)
+.++++||.|..|++|+.++-
T Consensus 105 ~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 105 KRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EEEecCCCEEeCCCEEEEEcH
Confidence 456889999999999999864
No 177
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=69.50 E-value=3.7 Score=37.97 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=24.3
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
|+--+-+|++||+|++||+|+++.-++
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl~~ 112 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDLDL 112 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECHHH
Confidence 788899999999999999999987654
No 178
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=68.13 E-value=14 Score=38.83 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=41.3
Q ss_pred EcCCCCeecCCCcEEEE-EeCceeeEEecC--CCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 111 LKQPGDRVEMDEPIAQI-ETDKVTIDVASP--QAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~ev-EtdK~~~~i~sp--~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.+|+||.|..||.+..| |+.-.++.|-.| ..|+|.. .+.+|+ ..+-+.++.++.++
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~-~~~~g~-~~~~~~~~~~~~~g 112 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTY-IAPAGD-YTVDDVILEVEFDG 112 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEE-EecCCC-eeEEEEEEEEEeCC
Confidence 47999999999999988 555567777555 4899876 456675 45567788887533
No 179
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=68.06 E-value=12 Score=41.65 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=43.6
Q ss_pred EcCCCCeecCCCcEEEE-EeCceeeEEecC--CCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 111 LKQPGDRVEMDEPIAQI-ETDKVTIDVASP--QAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~ev-EtdK~~~~i~sp--~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.+++||.|..||.+++| ||.-..+-|-.| ..|+|.++ +.+|+ ..+.++++.++..
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~~ 180 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEFQ 180 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEeeC
Confidence 58889999999999987 677667776555 46999765 66776 6778999999863
No 180
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=67.31 E-value=8.2 Score=41.50 Aligned_cols=29 Identities=38% Similarity=0.643 Sum_probs=26.7
Q ss_pred ceEEEEEEEcCCCCe-ecCCCcEEEEEeCc
Q 012142 103 TDGTLAKFLKQPGDR-VEMDEPIAQIETDK 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~-V~~gd~l~evEtdK 131 (470)
..|+|.+|++++||. |..|++|++||.+.
T Consensus 49 ~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 49 EEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 679999999999999 99999999998654
No 181
>PRK09294 acyltransferase PapA5; Provisional
Probab=66.05 E-value=1.6e+02 Score=30.83 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEec-------------CC--ceEEeeEcCCCCCCHHHH
Q 012142 296 KLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGT-------------KK--GLVVPVIRNSERMNFAEI 360 (470)
Q Consensus 296 kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t-------------~~--GL~vPvI~~a~~~sl~eI 360 (470)
++|++.++.-|.+.++.+.-... ...+.+++.|+. .+ |++.-.+.-....++.|+
T Consensus 229 ~~t~~~~l~Aa~~~~l~r~~~~~----------~~~i~~~~pv~~R~~l~p~~~~~~~~n~~g~~~~~~~~~~~~sf~el 298 (416)
T PRK09294 229 RLTVNALVSAAILLAEWQLRRTP----------HVPLPYVYPVDLRFRLTPPVAATEGTNLLGAATYLAEIGPDTDIVDL 298 (416)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCC----------CCceeeecchhhHhhcCCCCCcccceeeEeeeeeeccccCCCCHHHH
Confidence 47999999999888877642111 001112222221 00 111111222344699999
Q ss_pred HHHHHHHHHHHhc-CCCC--ccc----cCC------ccEEEecCCCCCC
Q 012142 361 EKEISTLAKKAND-GSIS--IDE----MAG------GTFTISNGGVYGS 396 (470)
Q Consensus 361 a~~l~~l~~~ar~-g~L~--~~d----~~g------gTftISNlG~~G~ 396 (470)
++++++..+...+ +.+. ..+ +.| .++++||+|.++.
T Consensus 299 a~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~Snlg~~~~ 347 (416)
T PRK09294 299 ARAIAATLRADLADGVIQQSFLHFGTAFEGTPPGLPPVVFITNLGVAPP 347 (416)
T ss_pred HHHHHHHHhhhhhcceeeehhhcccccccCCCCCCCCeEEEecCCcCCC
Confidence 9998877664433 2211 011 111 3789999999964
No 182
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=65.81 E-value=8 Score=43.50 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=22.1
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeC
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
+|+=-+++|++||+|++||+|+++.-+
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHH
Confidence 466678889999999999999988764
No 183
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=63.57 E-value=7.8 Score=43.73 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=19.9
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
+|+=-+.+|++||+|++||+|+++.-++
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 3555677778888888888877776543
No 184
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=61.97 E-value=16 Score=36.64 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=40.7
Q ss_pred EEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
.|..| ..+|+.|++||.+..++=. .++.+--|.+ .+ ++.+++|+.|..|+.|+.|
T Consensus 211 ~i~~~-~~~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 211 FIQTY-EYENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred ceeee-ccCCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCCEEEcchhhccC
Confidence 44445 3459999999999999876 4555544433 33 6779999999999998753
No 185
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=60.97 E-value=14 Score=39.18 Aligned_cols=29 Identities=41% Similarity=0.552 Sum_probs=27.0
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
.+|+|.++++++|+.|..|++|++++.+.
T Consensus 52 ~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 52 VAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 67999999999999999999999998655
No 186
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.10 E-value=13 Score=37.10 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=35.2
Q ss_pred cCCCCeecC-CCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEE
Q 012142 112 KQPGDRVEM-DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (470)
Q Consensus 112 v~~Gd~V~~-gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~ 163 (470)
++.|+.|.+ |++|++.. .-++.+|++|.+ ++-+...+.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeee
Confidence 566889988 99999843 378999999976 5677777778887764
No 187
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=58.51 E-value=11 Score=40.75 Aligned_cols=28 Identities=36% Similarity=0.609 Sum_probs=25.4
Q ss_pred ceEEEEEEEcCCCC-eecCCCcEEEEEeC
Q 012142 103 TDGTLAKFLKQPGD-RVEMDEPIAQIETD 130 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd-~V~~gd~l~evEtd 130 (470)
.+|+|.+|++++|+ .|+.|++|++++.+
T Consensus 52 ~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 52 DEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred CceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 68999999999995 79999999999853
No 188
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=58.28 E-value=25 Score=42.96 Aligned_cols=81 Identities=23% Similarity=0.321 Sum_probs=61.5
Q ss_pred CCceEEEEcCCCCCCCc----eEEEEEEEcC---CCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCC
Q 012142 87 SGDLVDAVVPFMGESIT----DGTLAKFLKQ---PGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGA 159 (470)
Q Consensus 87 ~~~~~~i~~P~lg~~~~----eg~i~~w~v~---~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~ 159 (470)
++...++.+-.|+.+-- .|+...++-+ .|-++.-|-..|..|-+.=-..+.||+.|.+.+.+|+.|+.|.+|+
T Consensus 632 ngs~~~v~v~~L~dggLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq 711 (2196)
T KOG0368|consen 632 NGSEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQ 711 (2196)
T ss_pred cCcEEEEEEEEecCCcEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCC
Confidence 45677788888877621 2333333333 3556677888888888777778999999999999999999999999
Q ss_pred eEEEEEeC
Q 012142 160 KIAVISKS 167 (470)
Q Consensus 160 ~l~~i~~~ 167 (470)
+-+.|+..
T Consensus 712 ~YAeiEvM 719 (2196)
T KOG0368|consen 712 PYAEIEVM 719 (2196)
T ss_pred eeeehehh
Confidence 99998753
No 189
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=57.83 E-value=9.8 Score=38.39 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCeecCCCcEEEEE
Q 012142 106 TLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
--..|++++||+|+.||.|+++|
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~ 86 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIE 86 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEe
Confidence 44578888888888888888877
No 190
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=57.32 E-value=16 Score=36.58 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=29.5
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
+.-|.||.+|++.. .++-||.|+.|++|+.+..
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 46699999999966 8999999999999999954
No 191
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=56.63 E-value=12 Score=37.31 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=32.5
Q ss_pred cCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEE
Q 012142 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (470)
Q Consensus 112 v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~ 163 (470)
..+|+.|++||.+..++=. .++.+--|.+-.--...+.+|+.|..|+.|+.
T Consensus 207 ~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~ 257 (259)
T PRK03140 207 THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGT 257 (259)
T ss_pred ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhcc
Confidence 3568888888888877776 55555444432212345677777777777754
No 192
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=56.00 E-value=24 Score=39.89 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=41.2
Q ss_pred ceEEEEEEEcCCCCeecC---CCcEEEEEeCceeeEEecCCCeEEEEE--------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEM---DEPIAQIETDKVTIDVASPQAGVIQNL-------------------------------- 147 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~---gd~l~evEtdK~~~~i~sp~~G~i~ki-------------------------------- 147 (470)
-+|+++...--+.+...+ ||-++..=++ ..|.||.+|+|..+
T Consensus 505 ~~G~vi~l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~g 581 (648)
T PRK10255 505 ITGDVVALDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKG 581 (648)
T ss_pred CCcEEEEcccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCC
Confidence 346666653333333322 7777776655 47888888888754
Q ss_pred ---eecCCCeeCCCCeEEEEEe
Q 012142 148 ---IAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 148 ---~v~eG~~v~~G~~l~~i~~ 166 (470)
+|++||.|+.||+|+.++.
T Consensus 582 F~~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 582 FKRLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred ceEEecCCCEEcCCCEEEEEcH
Confidence 3778899999999988864
No 193
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=54.13 E-value=18 Score=38.17 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=40.3
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEe-------ecCCCeeCCCCeEEEEE
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI-------AKEGETVEPGAKIAVIS 165 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~-------v~eG~~v~~G~~l~~i~ 165 (470)
+|+-+.+.|.|-... +...++.--+|-|..+|+|.++. |++||.|..||+|..=.
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~ 228 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGV 228 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeee
Confidence 588888887765533 33334555778899999999875 56789999999998644
No 194
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=53.58 E-value=12 Score=40.21 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=27.5
Q ss_pred CCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 140 QAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 140 ~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|.|.++.-+|||.+..|++||+||++..
T Consensus 51 eeGnIvsW~kKeGdkls~GDvl~EVETDKA 80 (470)
T KOG0557|consen 51 EEGNIVSWKKKEGDKLSAGDVLLEVETDKA 80 (470)
T ss_pred cCCceeeEeeccCCccCCCceEEEEecccc
Confidence 579999999999999999999999997654
No 195
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=53.47 E-value=27 Score=40.24 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=30.7
Q ss_pred EecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 136 VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 136 i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|-||..|+|.++.|++|+.|+.|++|+.++...
T Consensus 1082 igApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAMK 1114 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMK 1114 (1149)
T ss_pred cCCCCCCceEEEEEccCCeecCCCeeeehhhhh
Confidence 889999999999999999999999999997644
No 196
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=52.69 E-value=28 Score=41.46 Aligned_cols=68 Identities=26% Similarity=0.379 Sum_probs=50.2
Q ss_pred EEcCCCCCCCceEEEEEEE----cCCCCeecCCCcEEEE-EeCceeeEEecCC--CeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 93 AVVPFMGESITDGTLAKFL----KQPGDRVEMDEPIAQI-ETDKVTIDVASPQ--AGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 93 i~~P~lg~~~~eg~i~~w~----v~~Gd~V~~gd~l~ev-EtdK~~~~i~sp~--~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
+.+|.|... .+|. +++||+|.-||.+.+| ||.=..+-|--|. .|+|+.| +.+|+ ..+-++++.++
T Consensus 107 ~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 107 ISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVK 178 (1017)
T ss_pred CCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEE
Confidence 556777665 2343 7889999999999988 6666666665444 8999775 66786 56688999998
Q ss_pred eCC
Q 012142 166 KSG 168 (470)
Q Consensus 166 ~~~ 168 (470)
..+
T Consensus 179 ~~~ 181 (1017)
T PRK14698 179 TPS 181 (1017)
T ss_pred cCC
Confidence 643
No 197
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=51.97 E-value=24 Score=35.77 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=31.1
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..-+.||.+|.+ +..++.|+.|..||+|+.|.+.-.
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp~g 266 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDLYG 266 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCCC
Confidence 567899999998 567999999999999999976543
No 198
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.86 E-value=14 Score=37.27 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=15.5
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++|+.|++||+|++++
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~ 86 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQ 86 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 567777777777777777766
No 199
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=51.03 E-value=19 Score=39.83 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=27.0
Q ss_pred CCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 139 p~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
-.+|+|.++++++||.|..|++|+.++++.
T Consensus 124 m~eg~I~~W~vkeGD~V~~g~~l~eVETDK 153 (539)
T PLN02744 124 MTEGNIARWLKKEGDKVSPGEVLCEVETDK 153 (539)
T ss_pred cceeEEEEEEecCCCEecCCCeeEEEeecc
Confidence 356999999999999999999999998765
No 200
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=50.98 E-value=13 Score=40.47 Aligned_cols=33 Identities=24% Similarity=0.610 Sum_probs=30.3
Q ss_pred EecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 136 VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 136 i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+.||-.|+|.+++|++||.|..|+.|+.+....
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMK 636 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMK 636 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEEecc
Confidence 789999999999999999999999999987644
No 201
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=50.54 E-value=28 Score=29.79 Aligned_cols=49 Identities=27% Similarity=0.391 Sum_probs=34.0
Q ss_pred eecCCCcEEEEEe-CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 117 RVEMDEPIAQIET-DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 117 ~V~~gd~l~evEt-dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
...++.++-++.. ++..+.+ ....|.-.+.+|++||.|..||.|+..+.
T Consensus 14 ~~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 14 ELSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred ccccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCCEEcCCCEEEecCC
Confidence 3455666665543 3334444 44567677899999999999999998753
No 202
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=50.28 E-value=21 Score=36.27 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=30.0
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
..-+.||.+|.+ ...++.||.|+.|++|+.|-+.
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEeCC
Confidence 567899999998 5579999999999999999774
No 203
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=48.97 E-value=25 Score=28.39 Aligned_cols=30 Identities=37% Similarity=0.601 Sum_probs=23.4
Q ss_pred CCCeEEEEEeecCCCeeCCCCeEEEEEeCCCc
Q 012142 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (470)
Q Consensus 139 p~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~~ 170 (470)
+..|+ .++++.||.|..|++|+.|-..++.
T Consensus 30 ~~vGi--~l~~k~Gd~V~~Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 30 PAVGI--ELHKKVGDRVEKGDPLATIYANDEA 59 (75)
T ss_dssp TT-EE--EESS-TTSEEBTTSEEEEEEESSSS
T ss_pred cCcCe--EecCcCcCEECCCCeEEEEEcCChH
Confidence 45675 5789999999999999999877654
No 204
>COG3608 Predicted deacylase [General function prediction only]
Probab=48.92 E-value=30 Score=35.88 Aligned_cols=35 Identities=23% Similarity=0.481 Sum_probs=30.5
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.--+.||..|.| +.+++.||.|+.|++|+.|.+.+
T Consensus 256 ~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~~ 290 (331)
T COG3608 256 DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDPP 290 (331)
T ss_pred cceeecCCCceE-EEeecCCCcccCCCeEEEEecCC
Confidence 344899999988 78999999999999999997653
No 205
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=48.80 E-value=23 Score=37.52 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=26.5
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhcC
Q 012142 435 IALTYDHRLIDGREAVFFLRRIKDIVED 462 (470)
Q Consensus 435 ltls~DHRviDGa~aa~Fl~~lk~~LE~ 462 (470)
|++++.|.+.||.-+..|++.|.+....
T Consensus 147 lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 147 LGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEecccccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998765
No 206
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=48.56 E-value=2.5e+02 Score=26.76 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=26.4
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhcChh
Q 012142 433 MYIALTYDHRLIDGREAVFFLRRIKDIVEDPR 464 (470)
Q Consensus 433 m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~ 464 (470)
..+-+.++|=++||.-...|+++|.++.++..
T Consensus 129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~ 160 (301)
T PF00668_consen 129 YFLLISFHHIICDGWSLNILLRELLQAYAGLS 160 (301)
T ss_dssp EEEEEEEEGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccccccccccchhhhhhhHHhhhccc
Confidence 34888999999999999999999999887764
No 207
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=48.49 E-value=28 Score=36.40 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=30.0
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.-+.||..|.+ ...++.||.|+.|++|+.|.+...
T Consensus 290 ~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d~~g 324 (359)
T cd06250 290 EMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILDPLG 324 (359)
T ss_pred EEEeCCCCeEE-EEecCCCCEecCCCEEEEEECCCC
Confidence 45899999998 567999999999999999976543
No 208
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=48.27 E-value=18 Score=36.25 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=15.7
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
+--++|++++|+.|++||+|++++
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 444666777777777666666665
No 209
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=48.07 E-value=33 Score=34.59 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=31.3
Q ss_pred ceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 131 KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 131 K~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+....+.||.+|.+. ..++.||.|..|++|+.|.+..
T Consensus 217 ~~~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~ 253 (287)
T cd06251 217 RSSVWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPF 253 (287)
T ss_pred cCCeEEecCCCeEEE-EecCCCCEECCCCEEEEEECCC
Confidence 334679999999985 4899999999999999997643
No 210
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=47.95 E-value=40 Score=38.08 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=43.7
Q ss_pred ceEEEEEEEcCCCCeecC----CCcEEEEEeCceeeEEecCCCeEEEE--------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQN-------------------------------- 146 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~----gd~l~evEtdK~~~~i~sp~~G~i~k-------------------------------- 146 (470)
-+|+++.. -++-|.|=. ||-++..=++ -.|.||.+|+|..
T Consensus 485 ~~G~v~~L-~~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~ 560 (627)
T PRK09824 485 MTGEVVPL-EQVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGK 560 (627)
T ss_pred cceEEeeH-HHCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCC
Confidence 46777776 355565554 7777776544 3788888887763
Q ss_pred ---EeecCCCeeCCCCeEEEEEe
Q 012142 147 ---LIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 147 ---i~v~eG~~v~~G~~l~~i~~ 166 (470)
.++++||.|+.||+|+.++.
T Consensus 561 gF~~~v~~Gd~V~~G~~l~~~D~ 583 (627)
T PRK09824 561 FFTAHVNVGDKVNTGDLLIEFDI 583 (627)
T ss_pred CceEEecCCCEEcCCCEEEEEcH
Confidence 45678999999999999864
No 211
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.73 E-value=18 Score=36.64 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=16.8
Q ss_pred EEEEEcCCCCeecCCCcEEEEE
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evE 128 (470)
-++|++++|+.|++||+|++++
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~ 87 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVT 87 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEE
Confidence 4677788888888887777776
No 212
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=46.91 E-value=28 Score=35.12 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=31.2
Q ss_pred ceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 131 KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 131 K~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
....-+.||..|.+ +..++.||.|..|++|+.|.+.-
T Consensus 221 ~~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~dp~ 257 (288)
T cd06254 221 DDVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTDYF 257 (288)
T ss_pred cCCEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 34567899999998 56789999999999999997644
No 213
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=46.85 E-value=19 Score=36.56 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=15.2
Q ss_pred EEEEEcCCCCeecCCCcEEEEE
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evE 128 (470)
-++|++++|+.|++||.|++++
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEE
Confidence 3567777777777777777655
No 214
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=46.82 E-value=17 Score=29.92 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=16.7
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET 129 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt 129 (470)
+-+.+..|++||.|++||.|+.+..
T Consensus 50 ~~l~~~~v~~G~~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 50 GHLDSVSVKVGDRVKAGQVIGTVGN 74 (96)
T ss_dssp EEESEESS-TTSEE-TTCEEEEEBS
T ss_pred eccccccceecccccCCCEEEecCC
Confidence 3344556888888888888888874
No 215
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=46.68 E-value=63 Score=26.45 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=35.9
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.+|+|+.+.-.+ ...-...|+...-...+-. -+..+.+++||.|..|+.|+.+...+
T Consensus 20 ~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~----~l~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 20 ADGKVVFVGEDP-----GYGNYVIIQHGNGYITVYG----HLDSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp SSEEEEEEEEET-----TTEEEEEEEETTSEEEEEE----EESEESS-TTSEE-TTCEEEEEBSCS
T ss_pred ccEEEEEEEecc-----CCccEEEEEeCCcCCEEEe----ccccccceecccccCCCEEEecCCCC
Confidence 568998876532 3344556665443333322 25566799999999999999997443
No 216
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.68 E-value=19 Score=36.35 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=15.7
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++|+.|++||+|++++
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~ 88 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLE 88 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 677777777777777777766
No 217
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=46.27 E-value=16 Score=39.30 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=10.3
Q ss_pred eecCCCeeCCCCeEEEEE
Q 012142 148 IAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 148 ~v~eG~~v~~G~~l~~i~ 165 (470)
+++.||.|+.|++|+.|-
T Consensus 385 ~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 385 LLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred ccCCcCEeCCCCeEEEEE
Confidence 455555555555555555
No 218
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=45.59 E-value=21 Score=35.97 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=14.4
Q ss_pred EEEEEcCCCCeecCCCcEEEEE
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evE 128 (470)
-++|++++|+.|+.||+|++++
T Consensus 57 ~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 57 EVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3556667777777666666665
No 219
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=45.38 E-value=41 Score=34.39 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=31.4
Q ss_pred ceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 131 KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 131 K~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+...-+.||..|.+ ...++.|+.|+.|++|+.|.+.-
T Consensus 242 ~~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d~~ 278 (316)
T cd06252 242 DARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHFPE 278 (316)
T ss_pred CCcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEECCC
Confidence 34567899999998 56799999999999999997653
No 220
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=45.34 E-value=22 Score=38.01 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=26.5
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhcC
Q 012142 435 IALTYDHRLIDGREAVFFLRRIKDIVED 462 (470)
Q Consensus 435 ltls~DHRviDGa~aa~Fl~~lk~~LE~ 462 (470)
|++++.|.+.||.-+..|++.|.++...
T Consensus 150 lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 150 LGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999998765
No 221
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=45.33 E-value=61 Score=39.80 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=70.4
Q ss_pred CCcceee-eeeeeecCCCceecCCCchhh-----------------hhhhcCCccccccccccCCCC----ceEEEEcCC
Q 012142 40 RGFQRVQ-RSSYHILSGNYVCSTPRSEVI-----------------ELIQKGSFIGSRSRLFSSDSG----DLVDAVVPF 97 (470)
Q Consensus 40 ~~~~~~~-~~s~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~r~~~~~~~----~~~~i~~P~ 97 (470)
.|...+. ||-+++-+....|..|+.+.- |.+. +..++...|.||..+- ....+..|
T Consensus 278 ~~~~~v~iRSpltC~~~~~vC~~CYG~~la~~~lV~~GeaVGiiAaQSIG-EPGTQLTmRTFH~GGv~t~~~~~~i~a~- 355 (1364)
T CHL00117 278 FRAQPISIRSPLTCRSTSWICQLCYGWSLAHGDLVELGEAVGIIAGQSIG-EPGTQLTLRTFHTGGVFTGGTAEQVRAP- 355 (1364)
T ss_pred cCCCEEEEeCCcccccHHHHHHHHhCcccccCcccChhhhhhhhhhhccC-CCchhhhhhhhhhcccccccceeeEEec-
Confidence 4555544 666888887777777775222 3444 3345677899996322 23445555
Q ss_pred CCCCCceEEEEEEE-------cCCCC--eecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 98 MGESITDGTLAKFL-------KQPGD--RVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 98 lg~~~~eg~i~~w~-------v~~Gd--~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.+|+|.=.. -.-|+ -+.+.+.+..++...-...+.-|+...| +|++|+.|+.|++|+++....
T Consensus 356 -----~~G~i~~~~~~~~~~rt~~g~~~~~~~~~~~~~i~~~~~~~~~~ip~gs~l---~v~~g~~V~~~q~iae~~~~~ 427 (1364)
T CHL00117 356 -----FNGKIKFNEDLVHPTRTRHGHPAFLCKIDLYVTIESEDIIHNVNIPPKSLL---LVQNDQYVESEQVIAEIRAGT 427 (1364)
T ss_pred -----cCeEEEEecceeeEEeCcCCEEEEEEecceEEEEeCCCeEEEEEeCCCCEE---EEeCcCEEcCCCEEEEECCCC
Confidence 334443221 11122 1222334445555555566777777654 899999999999999997643
No 222
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.11 E-value=21 Score=36.29 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=16.3
Q ss_pred EEEEEcCCCCeecCCCcEEEEE
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evE 128 (470)
-++|++++|+.|++||+|++++
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~ 94 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIE 94 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3567788888877777777766
No 223
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=44.97 E-value=21 Score=36.44 Aligned_cols=14 Identities=0% Similarity=0.235 Sum_probs=7.8
Q ss_pred CCCCCHHHHHHHHH
Q 012142 352 SERMNFAEIEKEIS 365 (470)
Q Consensus 352 a~~~sl~eIa~~l~ 365 (470)
.|++|+.++.+.+.
T Consensus 234 LDn~s~e~~~~av~ 247 (296)
T PRK09016 234 LDNFTTEQMREAVK 247 (296)
T ss_pred eCCCChHHHHHHHH
Confidence 35666655555544
No 224
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=44.83 E-value=17 Score=39.09 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=10.8
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++++++.||+|++||+|+.|=
T Consensus 383 i~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 383 LTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred eEEccCCcCEECCCCeEEEEe
Confidence 445555555555555555543
No 225
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=44.70 E-value=42 Score=36.71 Aligned_cols=44 Identities=27% Similarity=0.404 Sum_probs=35.4
Q ss_pred EEEeCceeeEEecCCCeEEEE------------------------EeecCCCeeCCCCeEEEEEeCCC
Q 012142 126 QIETDKVTIDVASPQAGVIQN------------------------LIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 126 evEtdK~~~~i~sp~~G~i~k------------------------i~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.+..-+-+.+|.|+.+|+|.. ++++.||.|..|++|+.|-.+.+
T Consensus 406 ~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~~ 473 (493)
T TIGR02645 406 DIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAESE 473 (493)
T ss_pred ccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCCH
Confidence 344567788899999999875 47889999999999999975443
No 226
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=44.58 E-value=31 Score=35.64 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=29.8
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
..-+.||..|.+ ...++.|+.|..|++|+.|.+.
T Consensus 255 ~~~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~d~ 288 (325)
T TIGR02994 255 DCFIFAEDDGLI-EFMIDLGDPVSKGDVIARVYPV 288 (325)
T ss_pred CeEEEcCCCeEE-EEecCCCCEeCCCCEEEEEECC
Confidence 346999999998 4689999999999999999863
No 227
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=44.41 E-value=17 Score=36.41 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.8
Q ss_pred EEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 135 ~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
-+...+-|..-+.+|+|||.|..||+|+.=
T Consensus 31 l~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~d 60 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGDRVKAGQPLFED 60 (257)
T ss_pred EcCcccCCCCccEEeccCCEEeCCCeeEee
Confidence 356789999999999999999999999873
No 228
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=44.19 E-value=31 Score=36.12 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=28.6
Q ss_pred EeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcCh
Q 012142 422 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDP 463 (470)
Q Consensus 422 ~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P 463 (470)
+.+|.+. |++++.|-+.||.-+..|++.|.+.....
T Consensus 142 f~~GG~~------lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~ 177 (432)
T PF02458_consen 142 FKCGGLA------LGVSFHHAVADGTGFSQFLKAWAEICRGG 177 (432)
T ss_dssp ETTTEEE------EEEEEETTT--HHHHHHHHHHHHHHHHTT
T ss_pred eccccee------eeeeceeccCcccchhHHHHHHHhhhcCC
Confidence 4466554 99999999999999999999999987653
No 229
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=44.03 E-value=22 Score=35.60 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=17.2
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
+--++|++++|+.|+.||+|++++
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 344567788888888777777776
No 230
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.01 E-value=23 Score=36.20 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=12.9
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++||.|++||+|++++
T Consensus 84 v~~~~~dG~~v~~G~~i~~~~ 104 (294)
T PRK06978 84 VTWRYREGDRMTADSTVCELE 104 (294)
T ss_pred EEEEcCCCCEeCCCCEEEEEE
Confidence 556666666666666666554
No 231
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=44.00 E-value=52 Score=31.92 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEE
Q 012142 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
..|.-| ..|.|..+.+++|+.|..|++|+.|-
T Consensus 89 ~~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 89 VEVRSP------FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEEECC------CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 356788 78999999999999999999999874
No 232
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=43.98 E-value=49 Score=27.16 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=18.2
Q ss_pred EEEeecCCCeeCCCCeEEEEEeC
Q 012142 145 QNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 145 ~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.+.++++|+.+..|++|+.++..
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 47 VEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EEESS-TT-EEETTCEEEEEEEE
T ss_pred EEEEeCCCCCccCCcEEEEEEeC
Confidence 56889999999999999999753
No 233
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=43.76 E-value=22 Score=35.05 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=36.2
Q ss_pred CCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEE
Q 012142 115 GDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (470)
Q Consensus 115 Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~ 163 (470)
|+.|++||.+..++=. .++.+--|.+-+--+..+++|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999875 45555555432222567899999999999863
No 234
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.70 E-value=23 Score=35.74 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=14.9
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++|+.|++||+|++++
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~ 80 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIE 80 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 567777777777777777666
No 235
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=43.60 E-value=54 Score=36.66 Aligned_cols=57 Identities=19% Similarity=0.399 Sum_probs=41.7
Q ss_pred EcCCCCeecCCCcEEEEE-eCceeeEE--ecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 111 LKQPGDRVEMDEPIAQIE-TDKVTIDV--ASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~evE-tdK~~~~i--~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.+++||.|..||.+..|+ +.-..+-| +.-..|++.+| +.+|+ ..+.++++.+++.+.
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~-ytv~~~i~~~~~~~G 182 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD-YTVDDTIAVLEDEDG 182 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEEccCC
Confidence 588999999999999985 43445554 44458988665 66775 667889999976543
No 236
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=42.87 E-value=24 Score=36.28 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCeecCCCcEEEEE
Q 012142 106 TLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
--++|++++|+.|++||+|++++
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~ 100 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVT 100 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEE
Confidence 33567888888888877777776
No 237
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=42.77 E-value=72 Score=39.01 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=30.6
Q ss_pred EEcCCCCeecCCCcEEEEEe-------CceeeEEecCCCeEEE
Q 012142 110 FLKQPGDRVEMDEPIAQIET-------DKVTIDVASPQAGVIQ 145 (470)
Q Consensus 110 w~v~~Gd~V~~gd~l~evEt-------dK~~~~i~sp~~G~i~ 145 (470)
++|+.|+.|+++|+|||+-+ +|+.=.|.|+.+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 58999999999999999976 3566789999999764
No 238
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.66 E-value=24 Score=35.89 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=12.6
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++|+.|++||+|++++
T Consensus 78 v~~~~~dG~~v~~g~~i~~i~ 98 (289)
T PRK07896 78 VLDRVEDGARVPPGQALLTVT 98 (289)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 456666666666666665555
No 239
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=42.41 E-value=21 Score=38.98 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=26.2
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCcEEEEEe
Q 012142 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (470)
Q Consensus 98 lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEt 129 (470)
+|..++.+-=+.++++.||+|++||+|+.|=+
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 45556666667899999999999999999863
No 240
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.38 E-value=25 Score=35.68 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCeecCCCcEEEEE
Q 012142 106 TLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
--++|++++|+.|++||+|++++
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~ 92 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATIS 92 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEE
Confidence 44667777777777777777765
No 241
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=42.26 E-value=46 Score=35.17 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=38.2
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEe-------ecCCCeeCCCCeEEEEE
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI-------AKEGETVEPGAKIAVIS 165 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~-------v~eG~~v~~G~~l~~i~ 165 (470)
+|+-..+.|.|.....+ .+.+..--+|-|..+|+|.++. |++||.|..||+|..=.
T Consensus 163 ~GTrl~i~v~Ek~~~p~------~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG~ 225 (382)
T TIGR02876 163 RGTTLVIKVVEKQEPKP------VLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLISGI 225 (382)
T ss_pred EeEEEEEEEEecCCCCC------ccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEEeE
Confidence 58888888777653211 1122334567888999998876 56678999999988644
No 242
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=42.19 E-value=18 Score=31.80 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=26.7
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIA 162 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~ 162 (470)
..|+|.++..++ +|.-...|++.....-++.=-.| .+++|++||.|..|++|-
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~G--peLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAG--PELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESS--S-BS--TT-EETTT-BSB
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCC--CeEEEcCCCEEecCCccc
Confidence 457777776644 45555666665442222111112 156788888888888874
No 243
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=41.20 E-value=21 Score=38.36 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=15.8
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeC
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
+-=+.++++.||.|++||+|+.|=++
T Consensus 375 ~aGi~l~~k~g~~V~~g~~l~~i~~~ 400 (434)
T PRK06078 375 AVGIVLRKKVGDSVKKGESLATIYAN 400 (434)
T ss_pred ccCeEeccCCcCEeCCCCeEEEEeCC
Confidence 33455666666666666666665443
No 244
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=40.52 E-value=28 Score=34.94 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=15.5
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++|+.|++||+|++++
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~ 76 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVE 76 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEE
Confidence 467777777777777777766
No 245
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=40.50 E-value=57 Score=36.45 Aligned_cols=56 Identities=29% Similarity=0.436 Sum_probs=42.7
Q ss_pred EcCCCCeecCCCcEEEE-EeCceeeEE--ecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 111 LKQPGDRVEMDEPIAQI-ETDKVTIDV--ASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~ev-EtdK~~~~i--~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.+++||.|..||.+++| |+.-.++.| +.-..|+|.++ +.+|+ ..+-++++.++..+
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~~g 178 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDTDG 178 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEecCC
Confidence 38899999999999988 666666665 33468999775 66776 56788999987533
No 246
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.44 E-value=28 Score=35.29 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=11.8
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++|+.|+.||+|++++
T Consensus 60 v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 60 VEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 455555666555555555554
No 247
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=40.13 E-value=24 Score=37.69 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=21.7
Q ss_pred CceEEEEEEEcCCCCeecCCCcEEEEEe
Q 012142 102 ITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (470)
Q Consensus 102 ~~eg~i~~w~v~~Gd~V~~gd~l~evEt 129 (470)
++.+-=+.++++.||+|++||+|+.|=+
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYS 397 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeC
Confidence 4445556788999999999999988753
No 248
>PRK04350 thymidine phosphorylase; Provisional
Probab=39.79 E-value=24 Score=38.50 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCcEEEEE
Q 012142 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 98 lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
+|.-++.+-=+.++++.||+|++||+|+.|=
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 4445555656778888888888888888875
No 249
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=39.57 E-value=29 Score=35.11 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=13.8
Q ss_pred EEEEEcCCCCeecCCCcEEEEE
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evE 128 (470)
-++|++++|+.|++||.|++++
T Consensus 61 ~~~~~~~dG~~v~~g~~i~~~~ 82 (277)
T TIGR01334 61 SIDYAVPSGSRALAGTLLLEAK 82 (277)
T ss_pred EEEEEeCCCCEeCCCCEEEEEE
Confidence 3556666666666666666655
No 250
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=38.44 E-value=25 Score=38.40 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=22.6
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCcEEEEE
Q 012142 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 98 lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
+|..++.+-=+.++++.||+|++||+|+.|=
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 3445555555677888888888888888775
No 251
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=38.27 E-value=75 Score=35.05 Aligned_cols=57 Identities=28% Similarity=0.327 Sum_probs=40.3
Q ss_pred cCCCCeecCCCcEEEE-EeCceee-EEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 112 KQPGDRVEMDEPIAQI-ETDKVTI-DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 112 v~~Gd~V~~gd~l~ev-EtdK~~~-~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
+++||+|..||+|..| ||--... -++.+..|....+.+.+|+ ..+.++|+.++.+..
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~-ytv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE-YTVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC-ceeeEEEEEEecCCC
Confidence 4899999999999988 5543422 2445546666666777785 566789999976654
No 252
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=37.57 E-value=46 Score=29.58 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.9
Q ss_pred EEEEeecCCCeeCCCCeEEEEEe
Q 012142 144 IQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 144 i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
=-+.++++||.|..|++|+.++.
T Consensus 81 gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 81 GFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred ceEEEecCCCEEcCCCEEEEEcH
Confidence 34678999999999999999964
No 253
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=36.24 E-value=41 Score=35.78 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=26.6
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhcC
Q 012142 435 IALTYDHRLIDGREAVFFLRRIKDIVED 462 (470)
Q Consensus 435 ltls~DHRviDGa~aa~Fl~~lk~~LE~ 462 (470)
|++++.|.+.||.-+..|++.|.+....
T Consensus 160 lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 160 LGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998865
No 254
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=35.98 E-value=37 Score=31.29 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=27.6
Q ss_pred eecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCCc
Q 012142 117 RVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (470)
Q Consensus 117 ~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~~ 170 (470)
.+++|+-|+.++ .+|...-..+.+|+.|..|+.|+.+.+...+
T Consensus 75 ~l~~G~~L~l~~-----------veG~~v~~i~~~G~rV~~gd~lA~v~T~KGe 117 (150)
T PF09891_consen 75 LLKKGTELCLVP-----------VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGE 117 (150)
T ss_dssp EE-TT-B-EEEE-----------EESSEEEESS-TSEEE-TT-EEEEEE-TTS-
T ss_pred EECCCCEEEEEE-----------ecceEEEEEcccCcEeccCcEEEEEEecCcc
Confidence 367777788776 3566667889999999999999999875543
No 255
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=35.80 E-value=51 Score=29.19 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=27.3
Q ss_pred CcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 122 EPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 122 d~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
+.|..|..|-..+ .-.| -+.++++||.|..|++|+.++.
T Consensus 65 evLiHiGidTV~L----~G~g--F~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 65 EILIHIGIDTVKL----NGEG--FTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EEEEEeeeceeec----CCCc--eEEEecCCCEEcCCCEEEEEcH
Confidence 4455665554333 2234 3678999999999999999963
No 256
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=35.55 E-value=1.4e+02 Score=28.19 Aligned_cols=64 Identities=27% Similarity=0.378 Sum_probs=36.8
Q ss_pred ceEEEEEEEcCCCCeec--------CCCc-EEEEEeCceeeEEecCCCeEE-EEE--eecCCCeeCCCCeEEEEEeC
Q 012142 103 TDGTLAKFLKQPGDRVE--------MDEP-IAQIETDKVTIDVASPQAGVI-QNL--IAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~--------~gd~-l~evEtdK~~~~i~sp~~G~i-~ki--~v~eG~~v~~G~~l~~i~~~ 167 (470)
-+|+|.+....+|+... +++- ++.+||+...+-+.. ..|.+ .++ .+++|+.+..|+.++.+.-.
T Consensus 79 ~~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g~~v~kGeeiG~f~fG 154 (189)
T TIGR00164 79 AGGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEGEKVSRGQRIGMIRFG 154 (189)
T ss_pred cccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCCCEEecCcEEEEEecC
Confidence 45677776666665322 2333 346666543222221 12322 233 56889999999999998654
No 257
>PRK04350 thymidine phosphorylase; Provisional
Probab=35.51 E-value=72 Score=34.95 Aligned_cols=43 Identities=30% Similarity=0.455 Sum_probs=35.2
Q ss_pred EEeCceeeEEecCCCeEEEE------------------------EeecCCCeeCCCCeEEEEEeCCC
Q 012142 127 IETDKVTIDVASPQAGVIQN------------------------LIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 127 vEtdK~~~~i~sp~~G~i~k------------------------i~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
+..-+-..+|.|+.+|+|.. ++++.||.|..|++|+.|-...+
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~~ 465 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAESE 465 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCCH
Confidence 45567788899999999875 46889999999999999985443
No 258
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=35.23 E-value=37 Score=34.42 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=35.8
Q ss_pred CCeecCCCcEEEEEeCceeeEEecCCCeEEE-EEeecCCCeeCCCCeEEEEE
Q 012142 115 GDRVEMDEPIAQIETDKVTIDVASPQAGVIQ-NLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 115 Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~-ki~v~eG~~v~~G~~l~~i~ 165 (470)
|..|++||.+...+=. .++.+--|.+ .+. ...+.+|+.|..|+.|+.+.
T Consensus 237 ~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 237 AITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred CCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 7799999999999875 4555444433 332 23578999999999998653
No 259
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=34.48 E-value=23 Score=36.62 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=12.0
Q ss_pred EEcCCCCeecCCCcEEEEE
Q 012142 110 FLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 110 w~v~~Gd~V~~gd~l~evE 128 (470)
++|++||.|++||.|+++-
T Consensus 272 i~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 272 MLVREQQEVKAGQKIATMG 290 (319)
T ss_pred cccCCcCEECCCCeEEeEc
Confidence 4566666666666666654
No 260
>PRK00566 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=33.88 E-value=64 Score=38.93 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=62.6
Q ss_pred eeeeeeeecCCCceecCCCchhh-----------------hhhhcCCccccccccccCCCCceEEEEcCCCCCCCc----
Q 012142 45 VQRSSYHILSGNYVCSTPRSEVI-----------------ELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESIT---- 103 (470)
Q Consensus 45 ~~~~s~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~r~~~~~~~~~~~i~~P~lg~~~~---- 103 (470)
..||-+++.+....|.+|+..-- |.+. +..++...|.||..+- -++--+|.+.|-.+
T Consensus 848 ~iRS~ltC~s~~gvC~~CYG~~La~~~~v~iGeaVGiIAAQSIG-EPGTQLTmRTFHtGGv-dIT~Glprv~elfear~p 925 (1156)
T PRK00566 848 KIRSVLTCETRHGVCAKCYGRDLATGKLVNIGEAVGVIAAQSIG-EPGTQLTMRTFHTGGV-DITGGLPRVAELFEARKP 925 (1156)
T ss_pred EEcCCeeecCCCcccHhhhCccccCCCCcccCcceeEEeeeecC-CCccceeeeeeeecce-eccCCccchhhheeeccC
Confidence 45677899888888888886411 3444 3445777999998433 23345555444111
Q ss_pred --eEEEEEE--EcCCCCeecCCCcEEEEEeCc-eeeEEecCCCeEEEEEeecCCCeeCCCCeEEE
Q 012142 104 --DGTLAKF--LKQPGDRVEMDEPIAQIETDK-VTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (470)
Q Consensus 104 --eg~i~~w--~v~~Gd~V~~gd~l~evEtdK-~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~ 163 (470)
.+.|.++ .|+.+.. .+|.....|+.+. -..+..-|..- .+.|++||.|..|+.|..
T Consensus 926 k~~a~ise~~G~v~~~~~-~~~~~~i~i~~~~~~~~~y~vp~~~---~~~v~~gd~v~~G~~l~~ 986 (1156)
T PRK00566 926 KGPAIIAEIDGTVSFGKE-TKGKRRIVITPDDGEEREYLIPKGK---HLLVQEGDHVEAGDKLTD 986 (1156)
T ss_pred CCceEEEecCCEEEeccc-cCCceEEEEeCCCCceEEEEccCCC---eeeecCCCEEccCCcccC
Confidence 1333333 2221111 1344444555432 22344555543 457999999999999843
No 261
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit, predominant form. Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain.
Probab=33.83 E-value=69 Score=38.61 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=61.4
Q ss_pred eeeeeeeecCCCceecCCCchhh-----------------hhhhcCCccccccccccCCCCceE--EE--EcCCCCCCCc
Q 012142 45 VQRSSYHILSGNYVCSTPRSEVI-----------------ELIQKGSFIGSRSRLFSSDSGDLV--DA--VVPFMGESIT 103 (470)
Q Consensus 45 ~~~~s~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~r~~~~~~~~~~--~i--~~P~lg~~~~ 103 (470)
..||-+++-+....|..|+..-- |.+. +..++...|.||..+-... +| -+|.+-|=.+
T Consensus 840 ~iRS~ltC~s~~gvC~~CYG~~La~~~~V~~GeaVGiiAAQSIG-EPGTQLTmRTFHtGGv~~~~~DIT~GlpRv~elfe 918 (1140)
T TIGR02386 840 KVRSVLTCESEHGVCQKCYGRDLATGKLVEIGEAVGVIAAQSIG-EPGTQLTMRTFHTGGVAGASGDITQGLPRVKELFE 918 (1140)
T ss_pred EecCCeeeCCCCCCccccCCCcccCCcEecccccceeEeeeecC-CCcchhehhheeeccccccccccccCchhhhhhhh
Confidence 45677888888778888876311 3444 3345677899997433211 33 3665544111
Q ss_pred ------eEEEEEE--EcC-CCCeecCCCcEEEEEeCcee-eEEecCCCeEEEEEeecCCCeeCCCCeEEE
Q 012142 104 ------DGTLAKF--LKQ-PGDRVEMDEPIAQIETDKVT-IDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (470)
Q Consensus 104 ------eg~i~~w--~v~-~Gd~V~~gd~l~evEtdK~~-~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~ 163 (470)
...|.++ .|+ .++.. +|-....|..+.-+ .+..-|.. ..+.|++||.|..|+.|..
T Consensus 919 ar~p~~~a~iae~~G~v~~~~~~~-~~~~~i~i~~~~~~~~~y~ip~~---~~l~v~~gd~V~~G~~l~~ 984 (1140)
T TIGR02386 919 ARTPKDKAVIAEVDGTVEIIEDIV-KNKRVVVIKDENDEEKKYTIPFG---AQLRVKDGDSVSAGDKLTE 984 (1140)
T ss_pred cccCCCceEEEecCCEEEEeeccc-CCcEEEEEECCCCceeEEeccCC---ceEEecCCCEEccCCcccC
Confidence 1222222 111 01111 33444555543211 24445554 3567899999999999873
No 262
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.87 E-value=80 Score=28.64 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=28.1
Q ss_pred cCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 138 SPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 138 sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
-|..|.+.-..+..|+.+-.|++++-+.+-..
T Consensus 96 iPvEGYvVtpIaDvG~RvrkGd~~AAvttRkG 127 (161)
T COG4072 96 IPVEGYVVTPIADVGNRVRKGDPFAAVTTRKG 127 (161)
T ss_pred EecCcEEEEEeecccchhcCCCceeEEEeccc
Confidence 47899999999999999999999999876443
No 263
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=32.62 E-value=82 Score=34.56 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=33.1
Q ss_pred EeCceeeEEecCCCeEEEE------------------------EeecCCCeeCCCCeEEEEEeCCC
Q 012142 128 ETDKVTIDVASPQAGVIQN------------------------LIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 128 EtdK~~~~i~sp~~G~i~k------------------------i~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..-+-..+|.|+.+|+|.. ++++.||.|..|++|+.|-...+
T Consensus 409 ~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~~ 474 (500)
T TIGR03327 409 QVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAESE 474 (500)
T ss_pred CCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCCH
Confidence 3456677888888888865 46789999999999999985443
No 264
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=32.02 E-value=58 Score=30.20 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.3
Q ss_pred eEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 142 GVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 142 G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
|.-=+.++++||.|+.||+|+.++-
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECH
Confidence 4445789999999999999999964
No 265
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=31.68 E-value=70 Score=41.85 Aligned_cols=52 Identities=25% Similarity=0.411 Sum_probs=0.0
Q ss_pred EEcCCCCeecCCCcEEEE--EeCc----------------ee------eEEecCCCeEEE--------------------
Q 012142 110 FLKQPGDRVEMDEPIAQI--ETDK----------------VT------IDVASPQAGVIQ-------------------- 145 (470)
Q Consensus 110 w~v~~Gd~V~~gd~l~ev--EtdK----------------~~------~~i~sp~~G~i~-------------------- 145 (470)
+.|++||.|..||+|+.+ |+.| +. .-+-|+.+|+|.
T Consensus 2616 l~v~~g~~v~~gdilak~p~~~~~t~DITgGLprv~eLfear~~~pk~~a~i~ei~G~v~~~~~~~~~~~i~i~~~~~~~ 2695 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRS 2695 (2890)
T ss_pred EEecCCCEecccceEeeccccccccccccCCcccchhheEeecCCCCCceEEeccceEEEeccccCCceEEEEECCCCce
Q ss_pred ---------EEeecCCCeeCCCCeE
Q 012142 146 ---------NLIAKEGETVEPGAKI 161 (470)
Q Consensus 146 ---------ki~v~eG~~v~~G~~l 161 (470)
+++|++||.|..|+.|
T Consensus 2696 ~~y~v~~~~~~~v~~gd~v~~G~~l 2720 (2890)
T PRK09603 2696 MDYFVDKGKQILVHADEFVHAGEAM 2720 (2890)
T ss_pred eEEEccCCceeeecCCCEEccCCCc
No 266
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=30.40 E-value=60 Score=39.90 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=30.4
Q ss_pred EEEcCCCCeecCCCcEEEEEe--------CceeeEEecCCCeEE
Q 012142 109 KFLKQPGDRVEMDEPIAQIET--------DKVTIDVASPQAGVI 144 (470)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evEt--------dK~~~~i~sp~~G~i 144 (470)
.++|++||.|++||.|||+.. +|+...|-|..+|.|
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v 448 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEM 448 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEE
Confidence 358999999999999999974 556678889888874
No 267
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=29.82 E-value=55 Score=34.91 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=26.3
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhcC
Q 012142 435 IALTYDHRLIDGREAVFFLRRIKDIVED 462 (470)
Q Consensus 435 ltls~DHRviDGa~aa~Fl~~lk~~LE~ 462 (470)
|++++.|.+.||.-+..|++.|.+....
T Consensus 148 lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 148 LGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 9999999999999999999999998754
No 268
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=29.76 E-value=98 Score=33.10 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=32.1
Q ss_pred EEeCceeeEEecCCCeEEEE-------------------------------EeecCCCeeCCCCeEEEEEeCC
Q 012142 127 IETDKVTIDVASPQAGVIQN-------------------------------LIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 127 vEtdK~~~~i~sp~~G~i~k-------------------------------i~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+-..+-..+|.|+.+|+|.. ++.+.||.|..|++|+.|-..+
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~ 399 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSD 399 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCC
Confidence 34466677778888887764 5678899999999999997543
No 269
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=29.36 E-value=38 Score=30.42 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=16.9
Q ss_pred EEEeecCCCeeCCCCeEEEEEe
Q 012142 145 QNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 145 ~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
=+.++++||.|..|++|+.++.
T Consensus 86 F~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 86 FETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp EEESS-TTSEE-TTEEEEEE-H
T ss_pred eEEEEeCCCEEECCCEEEEEcH
Confidence 3678999999999999999964
No 270
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.08 E-value=53 Score=33.51 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=15.4
Q ss_pred EEEEEEc--CCCCeecCCCcEEEEE
Q 012142 106 TLAKFLK--QPGDRVEMDEPIAQIE 128 (470)
Q Consensus 106 ~i~~w~v--~~Gd~V~~gd~l~evE 128 (470)
...+|++ ++|+.|++||.|++++
T Consensus 71 ~~~~~~~~~~dG~~v~~G~~i~~v~ 95 (290)
T PRK06559 71 VTFQNPHQFKDGDRLTSGDLVLEII 95 (290)
T ss_pred EEEEEeecCCCCCEecCCCEEEEEE
Confidence 3455666 7777777777777766
No 271
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=28.97 E-value=1.6e+02 Score=30.47 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.0
Q ss_pred EEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 144 IQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 144 i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+.+++|++||.|+.||.|+.+...+
T Consensus 269 l~~i~Vk~Gq~V~~Gq~Ig~~G~tg 293 (319)
T PRK10871 269 NDTMLVREQQEVKAGQKIATMGSTG 293 (319)
T ss_pred CCccccCCcCEECCCCeEEeEcCCC
Confidence 4467899999999999999987544
No 272
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=28.58 E-value=1e+02 Score=33.29 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=31.6
Q ss_pred eCceeeEEecCCCeEEE-------------------------------EEeecCCCeeCCCCeEEEEEeCCC
Q 012142 129 TDKVTIDVASPQAGVIQ-------------------------------NLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 129 tdK~~~~i~sp~~G~i~-------------------------------ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..+-..+|.|+.+|+|. .++++.||.|..|++|+.|-..++
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~~ 407 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADDE 407 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCCH
Confidence 35667777788888774 457789999999999999985443
No 273
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=27.83 E-value=54 Score=34.17 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=17.9
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET 129 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt 129 (470)
+++ |.+++|+.|..|+++++||-
T Consensus 70 ~~v--~~~~dG~~v~~g~~il~i~G 92 (343)
T PRK08662 70 VDV--YALPEGTLFDPKEPVMRIEG 92 (343)
T ss_pred cEE--EEeCCCCEecCCceEEEEEE
Confidence 454 78888888888888888873
No 274
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=27.77 E-value=66 Score=33.96 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=19.1
Q ss_pred eEEEEEEE-------cCCCCeecCCCcEEE
Q 012142 104 DGTLAKFL-------KQPGDRVEMDEPIAQ 126 (470)
Q Consensus 104 eg~i~~w~-------v~~Gd~V~~gd~l~e 126 (470)
+|.|.++. |++||.|++||+|..
T Consensus 197 dGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 197 DGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 57777764 789999999999974
No 275
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=27.71 E-value=3.3e+02 Score=33.68 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=63.9
Q ss_pred Ccce-eeeeeeeecCCCceecCCCchhh-----------------hhhhcCCccccccccccCCCC----ceEEEEcCCC
Q 012142 41 GFQR-VQRSSYHILSGNYVCSTPRSEVI-----------------ELIQKGSFIGSRSRLFSSDSG----DLVDAVVPFM 98 (470)
Q Consensus 41 ~~~~-~~~~s~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~r~~~~~~~----~~~~i~~P~l 98 (470)
|... ..||-+++-+....|..|+.+.- |.+. +..++...|.||..+- ....+..|
T Consensus 275 ~~~~v~iRspltC~s~~gvC~~CYG~~la~~~lv~lGeaVGiiAaQSIG-EPGTQLTmRTFHtGGv~~~~~~~~i~~~-- 351 (1331)
T PRK02597 275 GVEEVMVRSPLTCEAARSVCRKCYGWSLAHNHLVDLGEAVGIIAAQSIG-EPGTQLTMRTFHTGGVFTGEVARQVRSP-- 351 (1331)
T ss_pred CCCEEEEECCEEecCCCCchhhccCcchhcCcccchhhhhhhhhhcccc-CCcchhehhhhhhccccccccceeEEec--
Confidence 4444 44666888888888888886332 2333 3345677899996322 12245555
Q ss_pred CCCCceEEEEEEEcCCCCee--cCCCcEEEEEeCceeeEEecCCCeEEEE--------EeecCCCeeCCCCeEEEEEeC
Q 012142 99 GESITDGTLAKFLKQPGDRV--EMDEPIAQIETDKVTIDVASPQAGVIQN--------LIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 99 g~~~~eg~i~~w~v~~Gd~V--~~gd~l~evEtdK~~~~i~sp~~G~i~k--------i~v~eG~~v~~G~~l~~i~~~ 167 (470)
..|+|.=..--.+-.+ ..|++....|.+ ..+.|.+...|...+ ++|+.|+.|+.+|+|+++...
T Consensus 352 ----~~G~i~~~~~~~~~~~rt~~g~~a~~~~~~-~~~~i~~~~~~~~~~~~ip~~s~l~v~~~q~v~~~q~iae~~~~ 425 (1331)
T PRK02597 352 ----FAGTVEFGKKLRTRPYRTRHGVEALQAEVD-FDLVLKPSGKGKPQKIEITQGSLLFVDDGQTVEADQLLAEVAAG 425 (1331)
T ss_pred ----cCeEEEEecCCcceEeECCCCcEEEEEeec-cEEEEEeCCCCceEEEEeCCCCEEEEECCcEEecCcEEEEeecC
Confidence 3454432111112112 235533333321 123333322222222 489999999999999999764
No 276
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=27.08 E-value=55 Score=27.03 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=26.3
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhcC
Q 012142 435 IALTYDHRLIDGREAVFFLRRIKDIVED 462 (470)
Q Consensus 435 ltls~DHRviDGa~aa~Fl~~lk~~LE~ 462 (470)
.++.+|-|+.++.+..++.+.+++++++
T Consensus 79 a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 79 ATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp EEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 7889999999999999999999999985
No 277
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=25.89 E-value=2.1e+02 Score=27.49 Aligned_cols=64 Identities=31% Similarity=0.398 Sum_probs=38.1
Q ss_pred ceEEEEEEEcCCCCeecC--------CC-cEEEEEeCce-eeE---EecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 103 TDGTLAKFLKQPGDRVEM--------DE-PIAQIETDKV-TID---VASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~--------gd-~l~evEtdK~-~~~---i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
-+|+|.++.-.+|+.... ++ .+..+||++. .+- |-+-..+.|. ..+++|+.+..|+.++.+.-.
T Consensus 98 ~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~v~kGe~~G~f~fG 174 (206)
T PRK05305 98 VSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDEVERGERFGLIRFG 174 (206)
T ss_pred ccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCEEccCcEEeEEecC
Confidence 568888888888874443 23 3336666531 122 1122222331 256889999999999998654
No 278
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=25.70 E-value=79 Score=33.17 Aligned_cols=59 Identities=12% Similarity=0.234 Sum_probs=42.2
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeE-EecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~-i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
+.+..|.-..+..|++||.+...+=.-..+- ++++. .+ +..+++|+.|..||.|+.+..
T Consensus 281 ~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 281 GDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCC
Confidence 3445566666789999999999887544333 34554 23 456899999999999987754
No 279
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=25.64 E-value=84 Score=26.17 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=25.1
Q ss_pred CCCeEEEEEeecC-CCeeCCCCeEEEEEeCCC
Q 012142 139 PQAGVIQNLIAKE-GETVEPGAKIAVISKSGE 169 (470)
Q Consensus 139 p~~G~i~ki~v~e-G~~v~~G~~l~~i~~~~~ 169 (470)
..-|.|..+.... |+.|..|++|+.|+....
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~ 57 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVESVKA 57 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEEEccE
Confidence 4468888877655 999999999999986654
No 280
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=24.47 E-value=1.4e+02 Score=32.33 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=17.6
Q ss_pred eCceeeEEecCCCeEEEEEee
Q 012142 129 TDKVTIDVASPQAGVIQNLIA 149 (470)
Q Consensus 129 tdK~~~~i~sp~~G~i~ki~v 149 (470)
.-+-..+|.|+.+|+|.++..
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~ 355 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDT 355 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeH
Confidence 357788999999999999864
No 281
>PRK02693 apocytochrome f; Reviewed
Probab=24.46 E-value=1.5e+02 Score=30.17 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=34.9
Q ss_pred ceEEEEcCCCCCCC---ceEEEEEEEcCCCCeecCCCcEEEEEeCceee-EEecCCCeEEEEEeecC
Q 012142 89 DLVDAVVPFMGESI---TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-DVASPQAGVIQNLIAKE 151 (470)
Q Consensus 89 ~~~~i~~P~lg~~~---~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~-~i~sp~~G~i~ki~v~e 151 (470)
...+|.+|-|+++- ++..-.+..+-.|--=-.||+-=. -+|... -+.|+.+|+|.+|.-.|
T Consensus 150 ~y~EivFPiLsPDPa~~k~v~f~KY~iyvGgNRGRGQvYP~--G~kSNN~v~~as~~G~i~~I~~~e 214 (312)
T PRK02693 150 QYQEIVFPVLSPDPATDKNIHFGKYSVHVGGNRGRGQVYPT--GEKSNNNVFTASAAGTITSIETGE 214 (312)
T ss_pred cccEEEEeecCCCCCcCCccccccccEEEcccCCccccCCC--CccccCceecccCCcEEEEEEecC
Confidence 34566666666533 345556666666665555554332 234433 35777788887777654
No 282
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=24.10 E-value=87 Score=26.70 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=39.3
Q ss_pred cEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHh--cCCCCcc
Q 012142 333 DISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKAN--DGSISID 379 (470)
Q Consensus 333 nIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar--~g~L~~~ 379 (470)
++++.+|...|+++.-=+|.-..|+..|-+++++|-+.+. .|.|.|.
T Consensus 9 e~~Lv~D~~tG~va~~~~dvi~~s~~pi~E~i~kLe~~addL~nsLdP~ 57 (96)
T PRK00965 9 EINLVMDPDTGLIAEMREDIIVVDMDPIEEEINKLEALADDLENSLDPR 57 (96)
T ss_pred ccCeeeccccceeeeccCCeEEEechHHHHHHHHHHHHHHHHHhccCCC
Confidence 5667888899999988888888999999999999977664 4777775
No 283
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=23.38 E-value=43 Score=32.93 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=25.4
Q ss_pred EEEcCCCCeecCCCcEEEEEeCceeeE
Q 012142 109 KFLKQPGDRVEMDEPIAQIETDKVTID 135 (470)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evEtdK~~~~ 135 (470)
.|+|.+|..+++=|..|.||.||+.++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 389999999999999999999999887
No 284
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=23.20 E-value=83 Score=32.99 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=11.1
Q ss_pred eecCCCeeCCCCeEEEEEeC
Q 012142 148 IAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 148 ~v~eG~~v~~G~~l~~i~~~ 167 (470)
.+++|+.+.+|++|+.++..
T Consensus 76 a~~eG~~v~~gepvl~i~G~ 95 (352)
T PRK07188 76 YLKDGDIINPFETVLEIEGP 95 (352)
T ss_pred EcCCCCEecCCCEEEEEEEc
Confidence 44555555555666555543
No 285
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=22.24 E-value=85 Score=31.22 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=19.4
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
+.+..|.+++|+.|..||++++||
T Consensus 49 ~~~~~~~~~eG~~v~~g~~vl~i~ 72 (281)
T cd00516 49 GPLVILAVPEGTVVEPGEPLLTIE 72 (281)
T ss_pred CceEEEECCCCCEecCCCEEEEEE
Confidence 567778888888888888888877
No 286
>CHL00037 petA cytochrome f
Probab=21.95 E-value=1.6e+02 Score=30.20 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=26.5
Q ss_pred eEEEEcCCCCCCCc---eEEEEEEEcCCCCeecCCCcEEEEEeCceeeE-EecCCCeEEEEEeec
Q 012142 90 LVDAVVPFMGESIT---DGTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQNLIAK 150 (470)
Q Consensus 90 ~~~i~~P~lg~~~~---eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~-i~sp~~G~i~ki~v~ 150 (470)
..++..|-|++.-. +..-.+..+-.|--=-.||+-=. -+|.... +.|+.+|+|.+|.-.
T Consensus 158 y~EivFPiLSPdPa~~k~~~f~KY~iyvGgNRGRGQvyP~--G~KSNNnv~~as~~G~I~~I~~~ 220 (320)
T CHL00037 158 YSEIVFPILSPDPATNKDVHFLKYPIYVGGNRGRGQIYPD--GSKSNNTVYNATAAGIVSKILRK 220 (320)
T ss_pred ccEEEEeecCCCCccCCCcccccccEEeccccCccccCCC--CcccCCcccccccCcEEEEEEEc
Confidence 46677777766422 33333333444443333433221 1233222 345555555555543
No 287
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=21.82 E-value=30 Score=30.37 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=10.3
Q ss_pred EEcCCCCeecCCCcEE
Q 012142 110 FLKQPGDRVEMDEPIA 125 (470)
Q Consensus 110 w~v~~Gd~V~~gd~l~ 125 (470)
..|++||.|+.||+|-
T Consensus 46 LiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 46 LIVSEGQSVKADQPLT 61 (118)
T ss_dssp BS--TT-EETTT-BSB
T ss_pred EEEcCCCEEecCCccc
Confidence 4799999999999984
No 288
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=21.60 E-value=1e+02 Score=26.26 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=39.8
Q ss_pred cEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHh--cCCCCccc
Q 012142 333 DISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKAN--DGSISIDE 380 (470)
Q Consensus 333 nIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar--~g~L~~~d 380 (470)
++++.+|...|++..--+|.-..|+..|-+++.+|-+.|. .|.|.|+-
T Consensus 8 E~~Lv~D~~tG~V~~~~~dvi~~s~~pi~eqi~kLe~~addl~nsLdP~~ 57 (97)
T PF05440_consen 8 EIGLVLDPETGVVAEEREDVIVVSMDPINEQIDKLEKAADDLVNSLDPRT 57 (97)
T ss_pred CcCeeeccccceeeeccCCeEEEechHHHHHHHHHHHHHHHHHhccCCCC
Confidence 4567888899999999999999999999999999977664 37777753
No 289
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=21.54 E-value=1.1e+02 Score=32.45 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=19.7
Q ss_pred ceEEEEEEE-------cCCCCeecCCCcEEE
Q 012142 103 TDGTLAKFL-------KQPGDRVEMDEPIAQ 126 (470)
Q Consensus 103 ~eg~i~~w~-------v~~Gd~V~~gd~l~e 126 (470)
.+|.|.++. |++||.|++||.|..
T Consensus 193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 358888775 688999999999984
No 290
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=20.59 E-value=1.7e+02 Score=31.64 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=17.5
Q ss_pred EeecCCCeeCCCCeEEEEEe
Q 012142 147 LIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 147 i~v~eG~~v~~G~~l~~i~~ 166 (470)
++++.||.|..|++|+.|-.
T Consensus 380 l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 380 LRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred eccCCcCEeCCCCeEEEEeC
Confidence 46788999999999999983
No 291
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=20.38 E-value=55 Score=31.13 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEE
Q 012142 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQ 126 (470)
Q Consensus 88 ~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~e 126 (470)
|..+.+.+| .+++.+|.+++|++|+.||.|++
T Consensus 171 GStvvl~f~-------~~~~~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 171 GSTVVLLFP-------KDKIFEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred CCeEEEEEe-------CCCccccccCCCCEEEeeeEEeC
Confidence 444555555 23444999999999999999873
No 292
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=20.38 E-value=71 Score=34.58 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=27.1
Q ss_pred EEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 135 ~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
-..+.+.|.-.+.+|++||.|..||+|+.-..
T Consensus 31 ipl~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~ 62 (447)
T TIGR01936 31 VDGRDFVGMRPKMKVRPGDKVKAGQPLFEDKK 62 (447)
T ss_pred EechhcCCCCCceEeCcCCEEcCCCEeEecCC
Confidence 34567789888999999999999999998643
No 293
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=20.24 E-value=1e+02 Score=31.43 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=11.1
Q ss_pred cCCCCeecCCCcEEEEE
Q 012142 112 KQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 112 v~~Gd~V~~gd~l~evE 128 (470)
+++|+.|..|++|++||
T Consensus 58 ~~dG~~v~~g~~i~~i~ 74 (302)
T cd01571 58 LPEGTIFNPKEPVLRIE 74 (302)
T ss_pred eCCCCEECCCCcEEEEE
Confidence 66666666666666665
No 294
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=20.02 E-value=86 Score=33.60 Aligned_cols=27 Identities=41% Similarity=0.539 Sum_probs=20.9
Q ss_pred CeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 141 AGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 141 ~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.|+ .++.+.||.|++|++|+.|...++
T Consensus 377 aGi--~l~kk~ge~Vk~Gd~l~tiya~~~ 403 (435)
T COG0213 377 AGI--YLHKKLGEKVKKGDPLATIYAESE 403 (435)
T ss_pred cce--EEEecCCCeeccCCeEEEEecCCc
Confidence 454 467889999999999999987544
No 295
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=20.00 E-value=1.1e+02 Score=32.83 Aligned_cols=32 Identities=16% Similarity=0.468 Sum_probs=28.7
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHhcCh
Q 012142 432 MMYIALTYDHRLIDGREAVFFLRRIKDIVEDP 463 (470)
Q Consensus 432 ~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P 463 (470)
...+.+.|||=+.||--+..|.+.|-+.|..+
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~ 171 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSL 171 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhc
Confidence 35589999999999999999999999999764
Done!