Query 012142
Match_columns 470
No_of_seqs 277 out of 2026
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 1.8E-86 6.1E-91 696.1 1.4 381 89-470 1-428 (428)
2 3mae_A 2-oxoisovalerate dehydr 100.0 3.9E-67 1.3E-71 515.0 25.8 231 238-468 15-245 (256)
3 1scz_A E2, dihydrolipoamide su 100.0 6.2E-67 2.1E-71 507.8 25.7 230 241-470 4-233 (233)
4 3l60_A Branched-chain alpha-ke 100.0 1E-65 3.5E-70 503.3 26.4 224 241-470 15-242 (250)
5 1dpb_A Dihydrolipoyl-transacet 100.0 8.1E-65 2.8E-69 495.8 27.3 228 240-468 14-243 (243)
6 2ii3_A Lipoamide acyltransfera 100.0 3E-64 1E-68 496.4 26.0 230 239-470 29-261 (262)
7 3rqc_A Probable lipoamide acyl 100.0 1.4E-63 4.9E-68 481.5 20.5 219 239-470 4-224 (224)
8 3b8k_A PDCE2;, dihydrolipoylly 100.0 7.5E-64 2.6E-68 488.0 13.6 227 240-468 11-239 (239)
9 2xt6_A 2-oxoglutarate decarbox 100.0 9E-51 3.1E-55 465.8 16.9 210 256-466 1-225 (1113)
10 1q23_A Chloramphenicol acetylt 100.0 1.1E-44 3.7E-49 348.5 24.7 198 244-463 11-215 (219)
11 3cla_A Type III chloramphenico 100.0 7.8E-44 2.7E-48 341.2 24.5 192 250-462 13-210 (213)
12 2i9d_A Chloramphenicol acetylt 100.0 1.3E-41 4.4E-46 326.5 21.9 180 262-460 25-216 (217)
13 2dne_A Dihydrolipoyllysine-res 99.8 2.1E-19 7.1E-24 154.2 9.6 83 87-169 4-87 (108)
14 3crk_C Dihydrolipoyllysine-res 99.8 7.9E-19 2.7E-23 144.5 12.3 82 88-169 3-85 (87)
15 1y8o_B Dihydrolipoyllysine-res 99.8 8E-19 2.7E-23 154.7 12.9 85 85-169 22-107 (128)
16 2dnc_A Pyruvate dehydrogenase 99.8 5.2E-19 1.8E-23 149.1 11.1 84 87-170 4-88 (98)
17 1k8m_A E2 component of branche 99.8 2.4E-18 8.3E-23 143.5 11.0 80 89-168 3-82 (93)
18 1ghj_A E2, E2, the dihydrolipo 99.7 1.3E-17 4.3E-22 134.4 9.6 76 91-166 2-77 (79)
19 1zy8_K Pyruvate dehydrogenase 99.7 1.3E-18 4.3E-23 168.0 0.0 81 88-168 1-82 (229)
20 1qjo_A Dihydrolipoamide acetyl 99.7 7.9E-17 2.7E-21 129.9 9.2 78 89-168 1-78 (80)
21 2l5t_A Lipoamide acyltransfera 99.7 8.6E-17 2.9E-21 128.8 9.2 75 91-165 2-76 (77)
22 1pmr_A Dihydrolipoyl succinylt 99.7 1.6E-18 5.6E-23 140.2 -1.2 77 90-166 2-78 (80)
23 1iyu_A E2P, dihydrolipoamide a 99.6 8.4E-16 2.9E-20 123.7 9.9 75 91-168 2-76 (79)
24 1gjx_A Pyruvate dehydrogenase; 99.6 3.8E-16 1.3E-20 126.2 4.6 77 90-167 2-78 (81)
25 2k7v_A Dihydrolipoyllysine-res 99.5 1.9E-15 6.3E-20 123.6 0.2 73 90-168 2-74 (85)
26 1z6h_A Biotin/lipoyl attachmen 99.4 8.2E-13 2.8E-17 103.8 9.4 65 103-167 6-70 (72)
27 2kcc_A Acetyl-COA carboxylase 99.4 3.1E-13 1.1E-17 110.3 6.5 67 103-170 12-78 (84)
28 2dn8_A Acetyl-COA carboxylase 99.3 2.3E-12 7.7E-17 108.5 9.1 65 103-168 24-88 (100)
29 2jku_A Propionyl-COA carboxyla 99.3 3.6E-13 1.2E-17 112.2 2.9 77 89-165 14-94 (94)
30 2d5d_A Methylmalonyl-COA decar 99.3 8.9E-12 3E-16 98.1 9.7 63 103-165 12-74 (74)
31 1bdo_A Acetyl-COA carboxylase; 99.3 8.9E-12 3.1E-16 100.1 9.1 63 103-165 11-80 (80)
32 1dcz_A Transcarboxylase 1.3S s 99.3 1.2E-11 4E-16 98.4 9.6 63 103-165 15-77 (77)
33 2ejm_A Methylcrotonoyl-COA car 99.3 9.7E-12 3.3E-16 104.5 8.6 67 103-169 21-87 (99)
34 3n6r_A Propionyl-COA carboxyla 99.2 1.7E-11 5.8E-16 135.4 10.1 61 105-165 621-681 (681)
35 3va7_A KLLA0E08119P; carboxyla 99.2 5.9E-11 2E-15 138.2 10.4 60 105-164 1176-1235(1236)
36 3hbl_A Pyruvate carboxylase; T 99.1 7.5E-11 2.6E-15 136.7 9.8 64 104-167 1085-1148(1150)
37 3u9t_A MCC alpha, methylcroton 99.1 5.7E-12 2E-16 139.0 0.0 64 104-167 610-673 (675)
38 3bg3_A Pyruvate carboxylase, m 98.9 7.9E-10 2.7E-14 122.1 3.8 61 104-164 657-717 (718)
39 2k32_A A; NMR {Campylobacter j 98.8 3E-09 1E-13 91.2 6.1 67 103-169 8-104 (116)
40 1zko_A Glycine cleavage system 98.8 5E-09 1.7E-13 93.0 7.0 63 107-169 47-117 (136)
41 2qf7_A Pyruvate carboxylase pr 98.8 2.6E-09 8.9E-14 124.1 6.1 63 103-165 1102-1164(1165)
42 1onl_A Glycine cleavage system 98.4 4.9E-07 1.7E-11 79.3 6.8 64 106-169 37-108 (128)
43 1hpc_A H protein of the glycin 98.3 2.7E-07 9.4E-12 81.3 4.0 64 105-168 36-107 (131)
44 3a7l_A H-protein, glycine clea 98.3 7.5E-07 2.6E-11 78.2 5.8 63 107-169 39-109 (128)
45 3ne5_B Cation efflux system pr 97.9 1.6E-05 5.5E-10 82.4 8.1 66 103-168 128-242 (413)
46 3lnn_A Membrane fusion protein 97.9 1.5E-05 5.3E-10 80.3 7.2 67 103-169 64-207 (359)
47 2f1m_A Acriflavine resistance 97.9 4.8E-06 1.6E-10 81.1 3.2 67 103-169 29-168 (277)
48 3fpp_A Macrolide-specific effl 97.8 1.7E-05 5.8E-10 79.5 6.0 66 103-168 38-191 (341)
49 3klr_A Glycine cleavage system 97.7 5.4E-05 1.8E-09 66.0 6.1 78 90-168 18-103 (125)
50 1vf7_A Multidrug resistance pr 97.5 2.8E-05 9.4E-10 79.3 2.7 66 103-168 50-174 (369)
51 3mxu_A Glycine cleavage system 97.5 0.00011 3.9E-09 65.2 6.1 63 90-153 40-103 (143)
52 3tzu_A GCVH, glycine cleavage 97.5 0.00011 3.9E-09 64.8 5.4 60 89-149 34-94 (137)
53 3hgb_A Glycine cleavage system 97.2 0.00049 1.7E-08 61.9 6.1 59 90-149 45-104 (155)
54 4dk0_A Putative MACA; alpha-ha 97.0 2.7E-05 9.1E-10 78.8 -3.9 64 103-166 39-190 (369)
55 2dn8_A Acetyl-COA carboxylase 96.6 0.001 3.5E-08 55.2 3.3 48 121-168 5-52 (100)
56 3na6_A Succinylglutamate desuc 96.5 0.0063 2.1E-07 61.2 8.7 59 107-167 267-329 (331)
57 3cdx_A Succinylglutamatedesucc 96.5 0.0076 2.6E-07 61.1 9.1 61 105-168 276-340 (354)
58 3fmc_A Putative succinylglutam 96.2 0.011 3.9E-07 60.3 8.8 61 105-167 298-364 (368)
59 1z6h_A Biotin/lipoyl attachmen 96.1 0.0068 2.3E-07 46.5 5.0 33 136-168 2-34 (72)
60 2d5d_A Methylmalonyl-COA decar 96.1 0.0092 3.1E-07 45.8 5.6 35 134-168 6-40 (74)
61 1dcz_A Transcarboxylase 1.3S s 96.0 0.0076 2.6E-07 46.9 4.8 36 133-168 8-43 (77)
62 2k32_A A; NMR {Campylobacter j 95.7 0.011 3.9E-07 49.7 5.2 34 134-167 2-35 (116)
63 2kcc_A Acetyl-COA carboxylase 95.3 0.013 4.4E-07 46.9 3.8 35 134-168 6-40 (84)
64 1f3z_A EIIA-GLC, glucose-speci 95.3 0.025 8.4E-07 51.2 6.0 66 91-166 13-117 (161)
65 2gpr_A Glucose-permease IIA co 95.2 0.028 9.7E-07 50.5 6.0 66 91-166 8-112 (154)
66 2qj8_A MLR6093 protein; struct 94.6 0.073 2.5E-06 53.2 8.1 61 105-167 265-329 (332)
67 2f1m_A Acriflavine resistance 94.5 0.035 1.2E-06 53.5 5.3 54 113-167 3-56 (277)
68 2ejm_A Methylcrotonoyl-COA car 94.3 0.037 1.3E-06 45.6 4.1 36 133-168 14-49 (99)
69 1ax3_A Iiaglc, glucose permeas 94.3 0.023 7.9E-07 51.5 3.1 60 103-166 19-117 (162)
70 1bdo_A Acetyl-COA carboxylase; 94.2 0.038 1.3E-06 43.3 4.0 35 134-168 5-46 (80)
71 2jku_A Propionyl-COA carboxyla 94.1 0.025 8.7E-07 46.2 2.8 36 133-168 25-60 (94)
72 2xha_A NUSG, transcription ant 93.6 0.059 2E-06 50.0 4.5 32 109-146 22-53 (193)
73 3lnn_A Membrane fusion protein 93.6 0.083 2.8E-06 52.7 6.0 57 112-168 35-92 (359)
74 2l5t_A Lipoamide acyltransfera 93.3 0.042 1.4E-06 42.7 2.6 32 137-168 11-42 (77)
75 3fpp_A Macrolide-specific effl 93.1 0.089 3.1E-06 52.1 5.4 56 111-167 10-65 (341)
76 3lu0_D DNA-directed RNA polyme 92.7 0.2 6.8E-06 58.3 8.0 42 109-152 1002-1043(1407)
77 1qjo_A Dihydrolipoamide acetyl 92.7 0.13 4.6E-06 40.0 4.7 28 141-168 14-41 (80)
78 3crk_C Dihydrolipoyllysine-res 92.4 0.11 3.9E-06 41.5 4.1 31 139-169 17-47 (87)
79 1ghj_A E2, E2, the dihydrolipo 92.4 0.072 2.5E-06 41.6 2.8 32 138-169 12-43 (79)
80 1k8m_A E2 component of branche 92.2 0.16 5.6E-06 41.2 4.8 31 139-169 16-46 (93)
81 2dnc_A Pyruvate dehydrogenase 92.0 0.16 5.3E-06 41.9 4.5 30 140-169 20-49 (98)
82 1gjx_A Pyruvate dehydrogenase; 92.0 0.11 3.8E-06 40.6 3.5 32 137-168 11-42 (81)
83 3ne5_B Cation efflux system pr 91.5 0.18 6.1E-06 51.9 5.4 58 111-168 98-157 (413)
84 2dne_A Dihydrolipoyllysine-res 91.3 0.18 6.1E-06 42.3 4.2 30 140-169 20-49 (108)
85 3d4r_A Domain of unknown funct 91.0 0.23 7.8E-06 44.8 4.7 49 103-151 107-156 (169)
86 1vf7_A Multidrug resistance pr 90.9 0.14 4.7E-06 51.7 3.8 55 112-167 23-77 (369)
87 2xhc_A Transcription antitermi 90.9 0.2 7E-06 50.7 4.9 48 109-162 62-138 (352)
88 1y8o_B Dihydrolipoyllysine-res 90.4 0.36 1.2E-05 41.9 5.4 30 140-169 40-69 (128)
89 1iyu_A E2P, dihydrolipoamide a 90.0 0.33 1.1E-05 37.7 4.4 36 89-130 40-75 (79)
90 2auk_A DNA-directed RNA polyme 89.7 0.33 1.1E-05 44.9 4.9 44 109-154 63-106 (190)
91 2xha_A NUSG, transcription ant 88.9 0.17 5.9E-06 46.9 2.3 46 112-163 85-158 (193)
92 2k7v_A Dihydrolipoyllysine-res 87.9 0.3 1E-05 38.7 2.9 36 89-130 38-73 (85)
93 1pmr_A Dihydrolipoyl succinylt 87.5 0.12 4E-06 40.6 0.2 30 139-168 14-43 (80)
94 4dk0_A Putative MACA; alpha-ha 87.4 0.13 4.4E-06 51.5 0.4 56 112-168 12-67 (369)
95 3n6r_A Propionyl-COA carboxyla 86.6 0.63 2.2E-05 51.1 5.5 37 133-169 612-648 (681)
96 3va7_A KLLA0E08119P; carboxyla 82.8 1.1 3.9E-05 52.4 5.6 37 133-169 1167-1203(1236)
97 3hbl_A Pyruvate carboxylase; T 81.7 1.2 4.2E-05 51.7 5.3 36 134-169 1078-1113(1150)
98 3bg3_A Pyruvate carboxylase, m 80.0 1.1 3.8E-05 49.5 4.0 36 134-169 650-685 (718)
99 2xhc_A Transcription antitermi 76.9 0.62 2.1E-05 47.2 0.7 28 112-145 125-152 (352)
100 3u9t_A MCC alpha, methylcroton 75.0 0.6 2E-05 51.2 0.0 36 133-168 602-637 (675)
101 2qf7_A Pyruvate carboxylase pr 74.2 2.2 7.6E-05 49.6 4.5 36 134-169 1096-1131(1165)
102 3fot_A 15-O-acetyltransferase; 73.9 55 0.0019 34.4 14.9 33 429-461 483-515 (519)
103 3dva_I Dihydrolipoyllysine-res 73.6 0.68 2.3E-05 48.0 0.0 30 103-132 52-81 (428)
104 2gpr_A Glucose-permease IIA co 73.3 1.3 4.5E-05 39.5 1.8 58 104-164 87-153 (154)
105 3our_B EIIA, phosphotransferas 70.0 2.4 8.2E-05 38.9 2.8 28 104-131 114-141 (183)
106 1zy8_K Pyruvate dehydrogenase 69.5 0.96 3.3E-05 43.0 0.0 31 139-169 15-45 (229)
107 2bco_A Succinylglutamate desuc 68.5 3.6 0.00012 41.3 4.0 51 111-168 280-330 (350)
108 1f3z_A EIIA-GLC, glucose-speci 68.4 5.3 0.00018 35.8 4.7 26 105-130 93-118 (161)
109 1qpo_A Quinolinate acid phosph 56.2 7.5 0.00026 38.0 3.6 23 106-128 71-93 (284)
110 3fmc_A Putative succinylglutam 55.9 9.3 0.00032 38.6 4.4 35 131-166 288-322 (368)
111 3na6_A Succinylglutamate desuc 54.8 11 0.00036 37.5 4.6 36 131-167 255-290 (331)
112 1x1o_A Nicotinate-nucleotide p 54.3 7.2 0.00025 38.1 3.1 21 108-128 74-94 (286)
113 3tqv_A Nicotinate-nucleotide p 54.2 7.3 0.00025 38.2 3.1 21 108-128 77-97 (287)
114 1ax3_A Iiaglc, glucose permeas 53.9 5.2 0.00018 35.9 1.9 27 104-130 92-118 (162)
115 3l0g_A Nicotinate-nucleotide p 53.1 8.1 0.00028 38.1 3.2 21 108-128 86-106 (300)
116 2b7n_A Probable nicotinate-nuc 52.9 9.1 0.00031 37.0 3.6 21 108-128 60-80 (273)
117 1o4u_A Type II quinolic acid p 52.4 6.8 0.00023 38.3 2.6 21 108-128 73-93 (285)
118 3gnn_A Nicotinate-nucleotide p 51.8 8.4 0.00029 38.0 3.1 21 108-128 88-108 (298)
119 3paj_A Nicotinate-nucleotide p 50.4 9 0.00031 38.1 3.1 21 108-128 110-130 (320)
120 1l5a_A Amide synthase, VIBH; n 49.7 1.9E+02 0.0066 28.1 15.9 140 296-461 231-402 (436)
121 1qap_A Quinolinic acid phospho 49.5 9.5 0.00032 37.4 3.1 22 107-128 86-107 (296)
122 1uou_A Thymidine phosphorylase 48.3 27 0.00091 36.6 6.5 43 127-169 366-437 (474)
123 1zko_A Glycine cleavage system 47.0 20 0.00068 31.1 4.5 34 136-169 39-73 (136)
124 3it5_A Protease LASA; metallop 44.6 7.8 0.00027 35.3 1.5 18 148-165 86-103 (182)
125 2jbm_A Nicotinate-nucleotide p 44.3 11 0.00037 37.0 2.6 21 108-128 73-93 (299)
126 1brw_A PYNP, protein (pyrimidi 42.3 36 0.0012 35.2 6.3 42 128-169 330-402 (433)
127 3h5q_A PYNP, pyrimidine-nucleo 42.1 13 0.00043 38.6 2.8 18 148-165 384-401 (436)
128 2dsj_A Pyrimidine-nucleoside ( 41.5 33 0.0011 35.3 5.8 41 128-169 323-394 (423)
129 3d4r_A Domain of unknown funct 40.9 25 0.00085 31.6 4.1 42 118-170 96-137 (169)
130 3cdx_A Succinylglutamatedesucc 39.8 30 0.001 34.4 5.1 39 128-167 262-300 (354)
131 1brw_A PYNP, protein (pyrimidi 39.0 19 0.00064 37.3 3.5 30 102-131 372-401 (433)
132 2e1v_A Acyl transferase; BAHD 38.9 25 0.00084 35.9 4.4 28 434-461 163-190 (454)
133 2dsj_A Pyrimidine-nucleoside ( 38.7 19 0.00064 37.2 3.5 27 105-131 367-393 (423)
134 4g22_A Hydroxycinnamoyl-COA sh 38.5 26 0.00088 35.7 4.5 27 435-461 152-178 (439)
135 2rkv_A Trichothecene 3-O-acety 38.2 25 0.00084 35.7 4.3 29 434-462 149-177 (451)
136 1hpc_A H protein of the glycin 37.4 40 0.0014 28.9 4.8 33 137-169 31-64 (131)
137 2bgh_A Vinorine synthase; VS, 36.8 26 0.0009 35.4 4.2 27 435-461 154-180 (421)
138 2xr7_A Malonyltransferase; xen 36.7 26 0.00088 35.7 4.2 28 434-461 158-185 (453)
139 1uou_A Thymidine phosphorylase 36.6 22 0.00076 37.2 3.7 24 108-131 413-436 (474)
140 2hsi_A Putative peptidase M23; 36.5 16 0.00054 35.6 2.3 21 147-167 232-252 (282)
141 1qwy_A Peptidoglycan hydrolase 36.0 16 0.00056 35.8 2.3 22 147-168 239-260 (291)
142 3tuf_B Stage II sporulation pr 36.0 16 0.00054 34.9 2.2 25 105-129 130-154 (245)
143 3lu0_D DNA-directed RNA polyme 32.9 9 0.00031 44.9 -0.1 23 110-132 1107-1131(1407)
144 1q9j_A PAPA5, polyketide synth 32.7 3.4E+02 0.012 26.1 14.8 68 296-373 234-316 (422)
145 3vr4_A V-type sodium ATPase ca 32.3 71 0.0024 34.3 6.7 55 111-168 130-187 (600)
146 3nyy_A Putative glycyl-glycine 31.2 21 0.00072 34.1 2.2 17 111-127 183-199 (252)
147 3c2e_A Nicotinate-nucleotide p 31.2 20 0.00068 35.0 2.1 21 108-128 69-95 (294)
148 2jgp_A Tyrocidine synthetase 3 30.6 4.3E+02 0.015 26.5 13.9 148 296-466 326-513 (520)
149 2tpt_A Thymidine phosphorylase 29.9 19 0.00066 37.2 1.9 23 108-130 383-405 (440)
150 2tpt_A Thymidine phosphorylase 29.5 33 0.0011 35.5 3.5 42 128-169 335-407 (440)
151 2lmc_B DNA-directed RNA polyme 28.1 7.6 0.00026 31.0 -1.2 15 111-125 68-82 (84)
152 3our_B EIIA, phosphotransferas 27.7 33 0.0011 31.3 2.7 21 146-166 119-139 (183)
153 1onl_A Glycine cleavage system 27.1 78 0.0027 26.9 4.9 32 138-169 32-64 (128)
154 2gu1_A Zinc peptidase; alpha/b 26.8 28 0.00095 34.8 2.3 22 147-168 284-305 (361)
155 2vsq_A Surfactin synthetase su 26.2 3.4E+02 0.012 31.4 11.7 153 296-465 251-434 (1304)
156 3a7l_A H-protein, glycine clea 26.0 77 0.0026 26.9 4.7 32 138-169 33-65 (128)
157 3h5q_A PYNP, pyrimidine-nucleo 25.3 89 0.003 32.2 5.8 21 129-149 334-354 (436)
158 3csq_A Morphogenesis protein 1 24.9 19 0.00066 35.7 0.7 21 109-129 250-270 (334)
159 1hcz_A Cytochrome F; electron 24.7 1.1E+02 0.0036 28.9 5.6 51 103-162 175-228 (252)
160 2qj8_A MLR6093 protein; struct 22.5 77 0.0026 31.0 4.6 34 133-167 257-290 (332)
161 3tuf_B Stage II sporulation pr 21.3 1.5E+02 0.0052 28.0 6.2 56 103-167 100-155 (245)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=1.8e-86 Score=696.06 Aligned_cols=381 Identities=31% Similarity=0.511 Sum_probs=13.1
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|+.|+.++
T Consensus 1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred Ccccccc--cc-cc--ccC---CCCCC----CCCC--C--C-CCCCCCcccCcccccC-----------CCCCCCCCCCC
Q 012142 169 EGVAQAA--SA-EK--AAA---QPPPA----EEKP--S--A-EKQTPESEAAPAVKDK-----------TPSEPPPTAKK 220 (470)
Q Consensus 169 ~~~~~~~--~~-~~--~~~---~~~~~----~~~~--~--~-e~~~~~~~asP~~r~~-----------~~s~~~~~~~~ 220 (470)
++..... .. .. .+. .+.+. +.+. . . ......+.++|++|++ .++++.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k 160 (428)
T 3dva_I 81 YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLK 160 (428)
T ss_dssp -----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCT
T ss_pred ccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeH
Confidence 4322111 00 00 000 00000 0000 0 0 0011235678998853 45665544321
Q ss_pred CCC---------CCCCCC----CCCCCC----CCCCCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHH
Q 012142 221 PTS---------PPSKPM----ASEPQL----PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS 283 (470)
Q Consensus 221 ~~~---------~~~~~~----~~~~~~----~~~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~ 283 (470)
... .++.+. ...+.. .....++++||+++||.||++|.+||+++||||++.+||+|+|+++|+
T Consensus 161 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk 240 (428)
T 3dva_I 161 EDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK 240 (428)
T ss_dssp TTTTTTSCC-----------------------------------------------------------------------
T ss_pred HHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHH
Confidence 110 000000 000000 011236789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeC--CeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHH
Q 012142 284 DYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIE 361 (470)
Q Consensus 284 ~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~--~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa 361 (470)
++|+.+ ++.|+|+||++||+||+++||++||+||++|++ ++|++++++|||+||++++||++|||+|++++++.||+
T Consensus 241 ~~~~~~-~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia 319 (428)
T 3dva_I 241 KFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALA 319 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhhH-hhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHH
Confidence 998753 457999999999999999999999999999987 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecc
Q 012142 362 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDH 441 (470)
Q Consensus 362 ~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DH 441 (470)
+++++|++++|+|+|+++||+||||||||+|+||+++|+|||||||+|||++|+++++|++.+|+++++++|+|||+|||
T Consensus 320 ~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g~i~~r~~m~lsls~DH 399 (428)
T 3dva_I 320 QEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDH 399 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECCEEEEeeeEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHhcChhhhhccC
Q 012142 442 RLIDGREAVFFLRRIKDIVEDPRRLLLDI 470 (470)
Q Consensus 442 RviDGa~aa~Fl~~lk~~LE~P~~lll~~ 470 (470)
|||||+++++||++|+++||||++|||++
T Consensus 400 RviDG~~aa~Fl~~lk~~Le~P~~lll~~ 428 (428)
T 3dva_I 400 RMIDGATAQKALNHIKRLLSDPELLLMEA 428 (428)
T ss_dssp -----------------------------
T ss_pred cccchHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 99999999999999999999999999975
No 2
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=3.9e-67 Score=514.98 Aligned_cols=231 Identities=37% Similarity=0.561 Sum_probs=224.2
Q ss_pred CCCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCcc
Q 012142 238 KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVV 317 (470)
Q Consensus 238 ~~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~l 317 (470)
...++++|++++||+||++|.+|++++||+|++.|+|+|+|+++|+++|+.+.++.|.|+|+++|++||+++||++||++
T Consensus 15 ~~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~ 94 (256)
T 3mae_A 15 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQL 94 (256)
T ss_dssp CCSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTT
T ss_pred CCCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHh
Confidence 45578899999999999999999999999999999999999999999998776677999999999999999999999999
Q ss_pred ceEEeCCeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCc
Q 012142 318 NAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSL 397 (470)
Q Consensus 318 Na~~~~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~ 397 (470)
|++|+++++++++++|||+||++++||+||||+|+|++|+.||++++++|+++||+|+|.++|++||||||||+|++|++
T Consensus 95 Na~~~~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~ 174 (256)
T 3mae_A 95 NSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSV 174 (256)
T ss_dssp SEEEETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCS
T ss_pred hhEEecCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 398 LSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 398 ~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
+|+|||||||+||||+|+++++||+++|+++++++|+||||||||||||+++|+||++|+++||||+.|..
T Consensus 175 ~ftpIInppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~~ 245 (256)
T 3mae_A 175 QSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENT 245 (256)
T ss_dssp EEECCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTTC
T ss_pred ceEcccCCCCceEEEecccEEEEEEECCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997754
No 3
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=6.2e-67 Score=507.79 Aligned_cols=230 Identities=60% Similarity=1.025 Sum_probs=224.2
Q ss_pred cceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceE
Q 012142 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (470)
Q Consensus 241 ~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~ 320 (470)
++++|++++||+||++|++||+++||+|++.|+|+|+|+++|+++|+.+.++.|.|+|+++|++||+++||++||++|++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 46689999999999999999999999999999999999999999998766677999999999999999999999999999
Q ss_pred EeCCeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCccee
Q 012142 321 IDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLST 400 (470)
Q Consensus 321 ~~~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~~ 400 (470)
|+++++++++++|||+||++++||++|||+|++++|+.||++++++|++++|+|+|+++|++||||||||+|++|+.+|+
T Consensus 84 ~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~~t 163 (233)
T 1scz_A 84 IDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMST 163 (233)
T ss_dssp EETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCC
T ss_pred EeCCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012142 401 PIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 470 (470)
Q Consensus 401 pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 470 (470)
|||||||+|||++|+++++|+++||+++++++|+||||||||||||+++|+||+.|+++||||+.||+++
T Consensus 164 pIin~pq~aIl~vG~~~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~~~ 233 (233)
T 1scz_A 164 PIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233 (233)
T ss_dssp CCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred cccCCCCcEEEEccccEEEEEEECCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875
No 4
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=1e-65 Score=503.27 Aligned_cols=224 Identities=30% Similarity=0.554 Sum_probs=216.4
Q ss_pred cceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceE
Q 012142 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (470)
Q Consensus 241 ~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~ 320 (470)
+++ |++++||+||++|++|++++||+|++.|||+|+|+++|+++|+ .|.|+|+++|++||+++||++||++|++
T Consensus 15 ~~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-----~~~kls~~~~iikAva~AL~~~P~~Na~ 88 (250)
T 3l60_A 15 DVR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVILNST 88 (250)
T ss_dssp CCC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGGGSEE
T ss_pred CCC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhEE
Confidence 345 9999999999999999999999999999999999999999863 4789999999999999999999999999
Q ss_pred EeC----CeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCC
Q 012142 321 IDG----DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGS 396 (470)
Q Consensus 321 ~~~----~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~ 396 (470)
|++ ++|++++++|||+||++++||+||||+|+|++|+.||++++++|++++|+|+|+++|++||||||||+|++|+
T Consensus 89 ~~~~~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~ 168 (250)
T 3l60_A 89 WVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGV 168 (250)
T ss_dssp EECTTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTC
T ss_pred EeccCCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCc
Confidence 975 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012142 397 LLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 470 (470)
Q Consensus 397 ~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 470 (470)
++|+|||||||+|||++|+++++||+++|+++++++|+||||||||||||+++|+||+.|+++||||+.|+.++
T Consensus 169 ~~ftpIinppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~~~~ 242 (250)
T 3l60_A 169 DDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242 (250)
T ss_dssp SSCCCCCCTTCSEEEEECCCEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTTTC
T ss_pred ceeEeeeCCCCceEEEecceEEEeEEECCEEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764
No 5
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=8.1e-65 Score=495.80 Aligned_cols=228 Identities=37% Similarity=0.551 Sum_probs=219.8
Q ss_pred CcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccce
Q 012142 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (470)
Q Consensus 240 ~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa 319 (470)
..+++|++++||.||++|.+||+++||+|++.|+|+|+|+++|+++|+.+. +.|.|+|+++|++||+++||++||++|+
T Consensus 14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~-~~g~kls~~~~~ikA~~~Al~~~P~~Na 92 (243)
T 1dpb_A 14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPLLLKACAYLLKELPDFNS 92 (243)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHH-HTTCCCCSHHHHHHHHHHHHHHSGGGGE
T ss_pred CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhh-hccCCCChHHHHHHHHHHHHHhChHhhE
Confidence 346789999999999999999999999999999999999999999987543 5689999999999999999999999999
Q ss_pred EEeC--CeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCc
Q 012142 320 VIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSL 397 (470)
Q Consensus 320 ~~~~--~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~ 397 (470)
+|++ +++++++++|||+||++++||++|||+|+|++|+.||++++++|++++|+|+|+++|++||||||||+|++|++
T Consensus 93 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~ 172 (243)
T 1dpb_A 93 SLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGT 172 (243)
T ss_dssp EECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCS
T ss_pred EEecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCcc
Confidence 9986 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 398 LSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 398 ~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
+|+|||||||+|||++|+++++|+++||+++++++|+||||||||||||+++|+||++|+++||||+.||+
T Consensus 173 ~~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 243 (243)
T 1dpb_A 173 AFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 (243)
T ss_dssp CCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred ceECccCCCCCeEEEccccEEEEEEECCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875
No 6
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=3e-64 Score=496.43 Aligned_cols=230 Identities=33% Similarity=0.541 Sum_probs=220.0
Q ss_pred CCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccc
Q 012142 239 DRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN 318 (470)
Q Consensus 239 ~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lN 318 (470)
..++++|++++||.||++|.+|+ ++||+|++.|+|+|+|+++|+++|+. .++.|.|+|+++|++||+++||++||++|
T Consensus 29 ~~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~-~~~~g~kls~~~~~ikAva~Al~~~P~~N 106 (262)
T 2ii3_A 29 GKDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPI-AFARGIKLSFMPFFLKAASLGLLQFPILN 106 (262)
T ss_dssp CCCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHH-HHHTTCCCCSHHHHHHHHHHHHHHCGGGS
T ss_pred CCcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhh-hhhccCCccHHHHHHHHHHHHHHhChHhh
Confidence 34678999999999999999997 69999999999999999999999874 34568999999999999999999999999
Q ss_pred eEEeC--CeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCC
Q 012142 319 AVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGS 396 (470)
Q Consensus 319 a~~~~--~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~ 396 (470)
++|++ +++++++++|||+||++++||++|||+|++++|+.||++++++|++++|+|+|+++|++||||||||+|++|+
T Consensus 107 a~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~ 186 (262)
T 2ii3_A 107 ASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGG 186 (262)
T ss_dssp EEECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCC
T ss_pred EEEeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCc
Confidence 99986 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeCCCCeEEEEecceeeeEEEe-CCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012142 397 LLSTPIINPPQSAILGMHSIVNRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 470 (470)
Q Consensus 397 ~~~~pii~ppq~aIL~vG~i~~~pv~~-~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 470 (470)
++|+|||||||+|||++|+++++|+++ ||+++++++|+||||||||||||+++|+||++|+++||||+.||+++
T Consensus 187 ~~~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~~~ 261 (262)
T 2ii3_A 187 TYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDL 261 (262)
T ss_dssp SCEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHHHC
T ss_pred cceECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHhhc
Confidence 999999999999999999999999997 79999999999999999999999999999999999999999998864
No 7
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=1.4e-63 Score=481.48 Aligned_cols=219 Identities=36% Similarity=0.593 Sum_probs=209.2
Q ss_pred CCcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccc
Q 012142 239 DRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN 318 (470)
Q Consensus 239 ~~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lN 318 (470)
..++++|++++||+||++|++|++++||+|++.|+|+|+|+++|+++|+ .|.|+|+++|++||+++||++||++|
T Consensus 4 ~~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~-----~g~kls~~~~~ikA~~~Al~~~P~~N 78 (224)
T 3rqc_A 4 GREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKA-----RNRKVTVTGFLARIVPSILKQYPYLN 78 (224)
T ss_dssp --CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTT-----TTCCCCHHHHHHHHHHHHHHHSGGGS
T ss_pred CCceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhh
Confidence 3457899999999999999999999999999999999999999999874 28899999999999999999999999
Q ss_pred eEEeCC--eEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCC
Q 012142 319 AVIDGD--DIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGS 396 (470)
Q Consensus 319 a~~~~~--~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~ 396 (470)
++|+++ ++++++++|||+||++++||+||||+|+|++|+.||++++++|++++|+|+|+++|++||||||||+|++|+
T Consensus 79 ~~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~ 158 (224)
T 3rqc_A 79 AIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGG 158 (224)
T ss_dssp BBCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCC
T ss_pred eEEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCc
Confidence 999876 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeCCCCeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012142 397 LLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 470 (470)
Q Consensus 397 ~~~~pii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 470 (470)
++|+|||||||+|||++|+++++|+ +++|+|||+|||||+||+++|+||++|+++||||+.||+++
T Consensus 159 ~~~tpiin~pq~aIl~vG~~~~~p~--------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~~ 224 (224)
T 3rqc_A 159 IMSTPIINYPEVAILGVHRILEREG--------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224 (224)
T ss_dssp SEEECCCCTTBSEEEEECCCEEETT--------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC--
T ss_pred cceEeccCCCCceEEEecccEEECC--------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 9999999999999999999999886 89999999999999999999999999999999999999875
No 8
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=7.5e-64 Score=488.01 Aligned_cols=227 Identities=28% Similarity=0.434 Sum_probs=218.0
Q ss_pred CcceeechhHHHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccce
Q 012142 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (470)
Q Consensus 240 ~~~~vpls~~rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa 319 (470)
.++++|++++||+||++|++||+++||+|++.|+|+|+|+++|+++|+.+. .+.|+|+++|++||+++||++||++|+
T Consensus 11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~--~~~kls~~~~~ikAv~~Al~~~P~~Na 88 (239)
T 3b8k_A 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILE--GRSKISVNDFIIKASALACLKVPEANS 88 (239)
T ss_dssp SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHT--TSSCCCHHHHHHHHHHHHHHHCCCSCT
T ss_pred CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhh--ccCCCCHHHHHHHHHHHHHHhChHhhE
Confidence 457789999999999999999999999999999999999999999987543 236999999999999999999999999
Q ss_pred EEeCCeEEEeCCccEEEEEecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcce
Q 012142 320 VIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLS 399 (470)
Q Consensus 320 ~~~~~~i~~~~~inIgiAv~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~ 399 (470)
+|+++++++++++|||+||++++||++|||+|+|++++.||++++++|++++|+|+|+++|++||||||||+|++|+++|
T Consensus 89 ~~~~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~f 168 (239)
T 3b8k_A 89 SWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNF 168 (239)
T ss_dssp TSCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSC
T ss_pred EEECCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCeEEEEecceeeeEEE--eCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012142 400 TPIINPPQSAILGMHSIVNRPMV--VGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 468 (470)
Q Consensus 400 ~pii~ppq~aIL~vG~i~~~pv~--~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 468 (470)
+|||||||+|||++|+++++|++ .||+++++++|+|||+|||||+||+++|+||++|+++||||+.||+
T Consensus 169 tpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 239 (239)
T 3b8k_A 169 SAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 (239)
T ss_dssp CCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred ECcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999 4889999999999999999999999999999999999999998875
No 9
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=9e-51 Score=465.76 Aligned_cols=210 Identities=23% Similarity=0.363 Sum_probs=178.6
Q ss_pred HHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeCC----eEEEeCC
Q 012142 256 RLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD----DIIYRDY 331 (470)
Q Consensus 256 ~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~~----~i~~~~~ 331 (470)
+|++|+ ++||+|++.+||+|+|+++|+++|+.+.++.|.|+|+++|++||+++||++||++|++|+++ .++++++
T Consensus 1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~ 79 (1113)
T 2xt6_A 1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH 79 (1113)
T ss_dssp -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence 588896 79999999999999999999999987666779999999999999999999999999999853 6999999
Q ss_pred ccEEEEEecC--Cc---eEEeeEcCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCccEEEecCCCCCCcceeeeeCCC
Q 012142 332 IDISFAVGTK--KG---LVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPP 406 (470)
Q Consensus 332 inIgiAv~t~--~G---L~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g~L~~~d~~ggTftISNlG~~G~~~~~pii~pp 406 (470)
|||||||+++ +| |+||||||++++|+.||++++++|+++||+|+|+++||+||||||||+|++|+.+|+||||||
T Consensus 80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinpp 159 (1113)
T 2xt6_A 80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG 159 (1113)
T ss_dssp CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTT
T ss_pred ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCC
Confidence 9999999997 66 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecceeeeEEEeC------CeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhh
Q 012142 407 QSAILGMHSIVNRPMVVG------GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 466 (470)
Q Consensus 407 q~aIL~vG~i~~~pv~~~------g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P~~l 466 (470)
|+||||+|+++++|++.+ |+++++++|+||||||||||||+++|+||+.|+++||||+.|
T Consensus 160 q~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~~w 225 (1113)
T 2xt6_A 160 QGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDFF 225 (1113)
T ss_dssp CSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred CceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcHHH
Confidence 999999999999999866 689999999999999999999999999999999999999865
No 10
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=100.00 E-value=1.1e-44 Score=348.55 Aligned_cols=198 Identities=12% Similarity=0.152 Sum_probs=170.6
Q ss_pred eechhH-HHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEe
Q 012142 244 VPMTRL-RKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID 322 (470)
Q Consensus 244 vpls~~-rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~ 322 (470)
+.+... ||...+.. ...++||+|++.|+|+|+|+++|++ .++|+++|++||+++||++||++|++|+
T Consensus 11 id~~~W~R~~~f~~f--~~~~~P~~t~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~ 78 (219)
T 1q23_A 11 VDISQWHRKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMK 78 (219)
T ss_dssp CCGGGCTTHHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSEEEE
T ss_pred ECcccCCCHHHHHHh--cCCCCcEEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhChHhhEEEE
Confidence 344443 44444444 2357999999999999999999854 2789999999999999999999999999
Q ss_pred CCeEEEeCCccEEEEE-ecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcC-CCCc-cccCCccEEEecCCCCCCcce
Q 012142 323 GDDIIYRDYIDISFAV-GTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG-SISI-DEMAGGTFTISNGGVYGSLLS 399 (470)
Q Consensus 323 ~~~i~~~~~inIgiAv-~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g-~L~~-~d~~ggTftISNlG~~G~~~~ 399 (470)
++++++++++|||+|| ++++||++||+++ ..+++.+|++++++|+++||+| +|++ +|+ ||||||||+|++|.+.+
T Consensus 79 ~~~i~~~~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i 156 (219)
T 1q23_A 79 DGELVIWDSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSF 156 (219)
T ss_dssp TTEEEEESCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEE
T ss_pred CCEEEEecccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCcccccccc
Confidence 9999999999999999 9999999999997 5689999999999999999998 6976 899 99999999999765444
Q ss_pred eeeeCCCC---eEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcCh
Q 012142 400 TPIINPPQ---SAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDP 463 (470)
Q Consensus 400 ~pii~ppq---~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~P 463 (470)
.+.+++|. ++||++|+++++ +| +++|+|||+|||||+||+++|+||++|+++||||
T Consensus 157 ~~~~~~~~~~~~pIi~~G~~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~ 215 (219)
T 1q23_A 157 DLNVANMDNFFAPVFTMGKYYTQ----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW 215 (219)
T ss_dssp EEEESCCTTCCSCEEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCccceeEEEecccEEEE----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCc
Confidence 44444332 599999999875 44 6899999999999999999999999999999986
No 11
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=100.00 E-value=7.8e-44 Score=341.24 Aligned_cols=192 Identities=13% Similarity=0.148 Sum_probs=169.2
Q ss_pred HHHHHHHHHhcccccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEeCCeEEEe
Q 012142 250 RKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYR 329 (470)
Q Consensus 250 rk~ia~~m~~S~~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~ 329 (470)
||...+.... .++||+|++.|+|+|+|+++|++ .++|+++|++||+++||++||++|++|++++++++
T Consensus 13 R~~~f~~f~~--~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~ 80 (213)
T 3cla_A 13 RREHFEFYRH--RLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVW 80 (213)
T ss_dssp THHHHHHHHH--TSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEE
T ss_pred cHHHHHHHhC--CCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEE
Confidence 3444444433 47899999999999999999853 27899999999999999999999999999999999
Q ss_pred CCccEEEEE-ecCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhcC-CCCc-cccCCccEEEecCCCCCCcceeeeeCCC
Q 012142 330 DYIDISFAV-GTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG-SISI-DEMAGGTFTISNGGVYGSLLSTPIINPP 406 (470)
Q Consensus 330 ~~inIgiAv-~t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~g-~L~~-~d~~ggTftISNlG~~G~~~~~pii~pp 406 (470)
+++|||+|| ++++||++||+++ +.+++.+|++++++++++||+| +|++ +|++||||||||+|+++.+.++..++.+
T Consensus 81 ~~v~igiAVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g 159 (213)
T 3cla_A 81 DSVDPQFTVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANF 159 (213)
T ss_dssp SCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCC
T ss_pred eccceeEEEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCC
Confidence 999999999 9999999999987 5689999999999999999996 9988 8999999999999998766664434333
Q ss_pred ---CeEEEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhcC
Q 012142 407 ---QSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 462 (470)
Q Consensus 407 ---q~aIL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE~ 462 (470)
..+|+++|+++++ +| +++|+|||+|||||+||++||+||++|+++|||
T Consensus 160 ~~~~~PIi~~G~~~~~----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 210 (213)
T 3cla_A 160 TDYFAPIITMAKYQQE----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp TTCCSCEEEEECCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred CcccccEEEeeEEEEE----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence 2579999999875 45 689999999999999999999999999999998
No 12
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-41 Score=326.54 Aligned_cols=180 Identities=18% Similarity=0.194 Sum_probs=162.6
Q ss_pred cccceEEEEeccccHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhhhCCccceEEe-CCeEEEeCCccEEEEE-e
Q 012142 262 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID-GDDIIYRDYIDISFAV-G 339 (470)
Q Consensus 262 ~~ip~~~~~~eidvt~l~~~r~~~~~~~~~~~g~kls~~~~liKA~~~AL~~~P~lNa~~~-~~~i~~~~~inIgiAv-~ 339 (470)
.++||+|++.|+|+|+|+++|++ .++|+++|++||+++||++||++|++|+ ++++++++++|||+|| +
T Consensus 25 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~ 94 (217)
T 2i9d_A 25 FQNPQLSITSEVECGGARQRAKA----------AGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI 94 (217)
T ss_dssp CSBCEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred CCCceEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence 57899999999999999999854 2789999999999999999999999999 8999999999999999 9
Q ss_pred cCCceEEeeEcCCCCCCHHHHHHHHHHHHHHHhc-CCCCcc------ccCCccEEEecCCCCCCcceeeeeCCC---CeE
Q 012142 340 TKKGLVVPVIRNSERMNFAEIEKEISTLAKKAND-GSISID------EMAGGTFTISNGGVYGSLLSTPIINPP---QSA 409 (470)
Q Consensus 340 t~~GL~vPvI~~a~~~sl~eIa~~l~~l~~~ar~-g~L~~~------d~~ggTftISNlG~~G~~~~~pii~pp---q~a 409 (470)
+++||++||+.. ..+++.+|++++++|+++||+ |+|+++ |++||||||||+|+++.+.++..++++ ..+
T Consensus 95 t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~~~P 173 (217)
T 2i9d_A 95 KENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYP 173 (217)
T ss_dssp STTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCCSSC
T ss_pred cCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccceEE
Confidence 999999999875 568999999999999999999 599995 999999999999998876665444444 358
Q ss_pred EEEecceeeeEEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHh
Q 012142 410 ILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIV 460 (470)
Q Consensus 410 IL~vG~i~~~pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~L 460 (470)
|+++|+++++ +| +++|+|||+||||+|||+++|+||+.|+++|
T Consensus 174 Ii~~Gk~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 174 LLNAGKAIIR----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp EEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEecceEEEE----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 9999999875 44 6899999999999999999999999999987
No 13
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=154.17 Aligned_cols=83 Identities=27% Similarity=0.435 Sum_probs=79.0
Q ss_pred CCceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCC-eeCCCCeEEEEE
Q 012142 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVIS 165 (470)
Q Consensus 87 ~~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~-~v~~G~~l~~i~ 165 (470)
.+|.++|+||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|+.|.
T Consensus 4 ~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~ 83 (108)
T 2dne_A 4 GSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV 83 (108)
T ss_dssp CCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred CccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999999 899999999998
Q ss_pred eCCC
Q 012142 166 KSGE 169 (470)
Q Consensus 166 ~~~~ 169 (470)
..++
T Consensus 84 ~~~~ 87 (108)
T 2dne_A 84 GKPE 87 (108)
T ss_dssp SCHH
T ss_pred cCcc
Confidence 6543
No 14
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.79 E-value=7.9e-19 Score=144.45 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=77.8
Q ss_pred CceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCC-eeCCCCeEEEEEe
Q 012142 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVISK 166 (470)
Q Consensus 88 ~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~-~v~~G~~l~~i~~ 166 (470)
++.++++||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.+..
T Consensus 3 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp CCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred CcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 457899999999999999999999999999999999999999999999999999999999999999 8999999999986
Q ss_pred CCC
Q 012142 167 SGE 169 (470)
Q Consensus 167 ~~~ 169 (470)
.++
T Consensus 83 ~~~ 85 (87)
T 3crk_C 83 KEA 85 (87)
T ss_dssp SST
T ss_pred ccC
Confidence 543
No 15
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.79 E-value=8e-19 Score=154.74 Aligned_cols=85 Identities=25% Similarity=0.461 Sum_probs=79.7
Q ss_pred CCCCceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCC-eeCCCCeEEE
Q 012142 85 SDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAV 163 (470)
Q Consensus 85 ~~~~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~-~v~~G~~l~~ 163 (470)
.+.++.++|+||++|++|.+|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+ .|.+|++|+.
T Consensus 22 ~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~ 101 (128)
T 1y8o_B 22 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI 101 (128)
T ss_dssp -CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEE
T ss_pred ccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred EEeCCC
Q 012142 164 ISKSGE 169 (470)
Q Consensus 164 i~~~~~ 169 (470)
|+..++
T Consensus 102 i~~~~~ 107 (128)
T 1y8o_B 102 IVEKEA 107 (128)
T ss_dssp EESSGG
T ss_pred EecCcc
Confidence 986543
No 16
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=149.08 Aligned_cols=84 Identities=24% Similarity=0.556 Sum_probs=79.4
Q ss_pred CCceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCee-CCCCeEEEEE
Q 012142 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETV-EPGAKIAVIS 165 (470)
Q Consensus 87 ~~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v-~~G~~l~~i~ 165 (470)
+.+.++|+||++|++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| .+|++|+.|.
T Consensus 4 ~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 4 GSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83 (98)
T ss_dssp CCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred CcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence 457889999999999999999999999999999999999999999999999999999999999999998 9999999998
Q ss_pred eCCCc
Q 012142 166 KSGEG 170 (470)
Q Consensus 166 ~~~~~ 170 (470)
..+++
T Consensus 84 ~~~~~ 88 (98)
T 2dnc_A 84 EEGED 88 (98)
T ss_dssp CTTSC
T ss_pred cCCCc
Confidence 76543
No 17
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.76 E-value=2.4e-18 Score=143.53 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=76.6
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+.++|.||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|.+|++|+.|+..+
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999997644
No 18
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.72 E-value=1.3e-17 Score=134.44 Aligned_cols=76 Identities=41% Similarity=0.675 Sum_probs=73.9
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
++++||++|+++.+|+|.+|+|++||.|++||+|+++|+||+..+|+||++|+|.++++++|+.|..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999864
No 19
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.70 E-value=1.3e-18 Score=167.95 Aligned_cols=81 Identities=26% Similarity=0.633 Sum_probs=0.0
Q ss_pred CceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCe-eCCCCeEEEEEe
Q 012142 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET-VEPGAKIAVISK 166 (470)
Q Consensus 88 ~~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~-v~~G~~l~~i~~ 166 (470)
+|.++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|+.
T Consensus 1 ~~~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 1 GDPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 3678899999999999999999999999999999999999999999999999999999999999996 999999999975
Q ss_pred CC
Q 012142 167 SG 168 (470)
Q Consensus 167 ~~ 168 (470)
++
T Consensus 81 ~~ 82 (229)
T 1zy8_K 81 EG 82 (229)
T ss_dssp --
T ss_pred cC
Confidence 44
No 20
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.68 E-value=7.9e-17 Score=129.87 Aligned_cols=78 Identities=26% Similarity=0.520 Sum_probs=74.1
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|.++++||++|++ +|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 1 m~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp CEEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred CCeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 4578999999998 99999999999999999999999999999999999999999999999999999999999997653
No 21
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.68 E-value=8.6e-17 Score=128.84 Aligned_cols=75 Identities=32% Similarity=0.588 Sum_probs=73.2
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999985
No 22
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.68 E-value=1.6e-18 Score=140.18 Aligned_cols=77 Identities=36% Similarity=0.605 Sum_probs=73.9
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
.++++||++|+++.+|+|.+|+|++||.|++||+|+++|+||+..+|+||++|+|.++++++|+.|..|++|+.++.
T Consensus 2 ~~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CcEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999998864
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.63 E-value=8.4e-16 Score=123.72 Aligned_cols=75 Identities=25% Similarity=0.492 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
++++||++|++ + +|.+|+|++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+.|..|++|+.|...+
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 57899999996 7 999999999999999999999999999999999999999999999999999999999997644
No 24
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.60 E-value=3.8e-16 Score=126.22 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=73.0
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.++++||++| ++..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.+...
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 3678999999 6889999999999999999999999999999999999999999999999999999999999999654
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.50 E-value=1.9e-15 Score=123.62 Aligned_cols=73 Identities=26% Similarity=0.529 Sum_probs=68.6
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.++|++|.+ |+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 2 ~~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 2 VKEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp CSCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred CcEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 356788977 8999999999999999999999999999999999999999999999999999999999998654
No 26
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.41 E-value=8.2e-13 Score=103.75 Aligned_cols=65 Identities=28% Similarity=0.487 Sum_probs=62.0
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
..|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+.|..|++|+.|...
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 46999999999999999999999999999999999999999999999999999999999998643
No 27
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.40 E-value=3.1e-13 Score=110.25 Aligned_cols=67 Identities=19% Similarity=0.378 Sum_probs=63.1
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCCc
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~~ 170 (470)
..|+|.+|++++||.|++||+|++||+||+.++|+||.+|+|.+++ ++|+.|.+|++|+.|...+.+
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~~~ 78 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDDLE 78 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSCSC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCChh
Confidence 5699999999999999999999999999999999999999999999 999999999999999766543
No 28
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-12 Score=108.48 Aligned_cols=65 Identities=22% Similarity=0.430 Sum_probs=61.7
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
..|+|.+|++++||.|++||+|+++|+||+..+|+||++|+|. +++++|+.|..|++|+.|...+
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~~ 88 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELDD 88 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCSC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcCC
Confidence 5699999999999999999999999999999999999999999 9999999999999999997543
No 29
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.33 E-value=3.6e-13 Score=112.21 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCCCC----ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 89 DLVDAVVPFMGESI----TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 89 ~~~~i~~P~lg~~~----~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
...+|.+|..++.. ..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++.+++|+.|..|++|+.|
T Consensus 14 ~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i 93 (94)
T 2jku_A 14 GTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93 (94)
T ss_dssp ----------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-----------------------------------
T ss_pred cCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEE
Confidence 45678888888764 58999999999999999999999999999999999999999999999999999999999987
Q ss_pred E
Q 012142 165 S 165 (470)
Q Consensus 165 ~ 165 (470)
+
T Consensus 94 e 94 (94)
T 2jku_A 94 E 94 (94)
T ss_dssp -
T ss_pred C
Confidence 3
No 30
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.31 E-value=8.9e-12 Score=98.11 Aligned_cols=63 Identities=29% Similarity=0.577 Sum_probs=60.6
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
..|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 569999999999999999999999999999999999999999999999999999999999873
No 31
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.29 E-value=8.9e-12 Score=100.14 Aligned_cols=63 Identities=19% Similarity=0.415 Sum_probs=58.9
Q ss_pred ceEEEEE-------EEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 103 TDGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 103 ~eg~i~~-------w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
..|+|.+ |++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 11 ~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 11 MVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 3477777 59999999999999999999999999999999999999999999999999999873
No 32
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.29 E-value=1.2e-11 Score=98.43 Aligned_cols=63 Identities=25% Similarity=0.504 Sum_probs=60.7
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
..|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 569999999999999999999999999999999999999999999999999999999999874
No 33
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.27 E-value=9.7e-12 Score=104.46 Aligned_cols=67 Identities=18% Similarity=0.395 Sum_probs=63.4
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...+.
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES 87 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence 4599999999999999999999999999999999999999999999999999999999999976554
No 34
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.23 E-value=1.7e-11 Score=135.37 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=60.0
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus 621 G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999884
No 35
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.15 E-value=5.9e-11 Score=138.19 Aligned_cols=60 Identities=32% Similarity=0.490 Sum_probs=59.4
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++++++||.|.+|++|+.|
T Consensus 1176 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999987
No 36
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.13 E-value=7.5e-11 Score=136.73 Aligned_cols=64 Identities=23% Similarity=0.471 Sum_probs=60.9
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++++++|+.|.+|++|+.|+.+
T Consensus 1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 3999999999999999999999999999999999999999999999999999999999999654
No 37
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.12 E-value=5.7e-12 Score=138.97 Aligned_cols=64 Identities=30% Similarity=0.598 Sum_probs=0.0
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++++++||.|.+|++|+.|+.+
T Consensus 610 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 610 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 3999999999999999999999999999999999999999999999999999999999999754
No 38
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.86 E-value=7.9e-10 Score=122.15 Aligned_cols=61 Identities=21% Similarity=0.331 Sum_probs=59.5
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
.|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i 717 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence 4999999999999999999999999999999999999999999999999999999999876
No 39
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.84 E-value=3e-09 Score=91.16 Aligned_cols=67 Identities=19% Similarity=0.406 Sum_probs=61.6
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceee-----------------------------EEecCCCeEEEEEeecCCC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-----------------------------DVASPQAGVIQNLIAKEGE 153 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~-----------------------------~i~sp~~G~i~ki~v~eG~ 153 (470)
..|+|.+|+|++||.|++||+|+++++.++.. .|.||.+|+|.++.+++|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 56999999999999999999999999986654 8999999999999999999
Q ss_pred eeCCC-CeEEEEEeCCC
Q 012142 154 TVEPG-AKIAVISKSGE 169 (470)
Q Consensus 154 ~v~~G-~~l~~i~~~~~ 169 (470)
.|..| ++|+.|.+.+.
T Consensus 88 ~v~~g~~~l~~i~~~~~ 104 (116)
T 2k32_A 88 YVSASTTELVRVTNLNP 104 (116)
T ss_dssp EECTTTSCCEEEECSCT
T ss_pred EEcCCCcEEEEEECCCe
Confidence 99999 99999987654
No 40
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.82 E-value=5e-09 Score=92.98 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=56.4
Q ss_pred EEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEE---eecCCCeeC---CCC-eEEEEEeCCC
Q 012142 107 LAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL---IAKEGETVE---PGA-KIAVISKSGE 169 (470)
Q Consensus 107 i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki---~v~eG~~v~---~G~-~l~~i~~~~~ 169 (470)
|+.+.+ ++||+|++||+||+||+||+..+|.||.+|+|.++ +++.|+.|. .|+ .|+.|...+.
T Consensus 47 i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~~ 117 (136)
T 1zko_A 47 VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDE 117 (136)
T ss_dssp EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECCH
Confidence 444444 99999999999999999999999999999999999 899999998 898 9999986653
No 41
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.81 E-value=2.6e-09 Score=124.11 Aligned_cols=63 Identities=19% Similarity=0.424 Sum_probs=54.2
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~ 165 (470)
..|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 349999999999999999999999999999999999999999999999999999999999875
No 42
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.37 E-value=4.9e-07 Score=79.34 Aligned_cols=64 Identities=25% Similarity=0.232 Sum_probs=52.5
Q ss_pred EEEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeec---CCCee---CCCC-eEEEEEeCCC
Q 012142 106 TLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK---EGETV---EPGA-KIAVISKSGE 169 (470)
Q Consensus 106 ~i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~---eG~~v---~~G~-~l~~i~~~~~ 169 (470)
.|+.+.+ ++||+|++||++|+||+||+..+|.||.+|+|.++..+ ..+.+ +-|+ -|+.|...+.
T Consensus 37 ~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 108 (128)
T 1onl_A 37 DVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDM 108 (128)
T ss_dssp SEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCG
T ss_pred CceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECCH
Confidence 3444444 99999999999999999999999999999999999754 44555 6676 8888886653
No 43
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.32 E-value=2.7e-07 Score=81.27 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=52.9
Q ss_pred EEEEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCC---eeC---CCC-eEEEEEeCC
Q 012142 105 GTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE---TVE---PGA-KIAVISKSG 168 (470)
Q Consensus 105 g~i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~---~v~---~G~-~l~~i~~~~ 168 (470)
|.|+.+.+ ++||+|++||++|+||+||+..+|.||.+|+|.++..+.++ .|. -|+ -|+.|...+
T Consensus 36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~ 107 (131)
T 1hpc_A 36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS 107 (131)
T ss_dssp CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESS
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECC
Confidence 44666655 99999999999999999999999999999999999865554 553 465 888888655
No 44
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.28 E-value=7.5e-07 Score=78.17 Aligned_cols=63 Identities=24% Similarity=0.188 Sum_probs=51.5
Q ss_pred EEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCC---CeeC---CCC-eEEEEEeCCC
Q 012142 107 LAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG---ETVE---PGA-KIAVISKSGE 169 (470)
Q Consensus 107 i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG---~~v~---~G~-~l~~i~~~~~ 169 (470)
|+.+.+ ++||+|++||++|+||++|+..+|.||.+|+|.++..+.+ +.|. -|+ -|+.|...+.
T Consensus 39 i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 109 (128)
T 3a7l_A 39 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDE 109 (128)
T ss_dssp EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred eEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECCH
Confidence 444444 9999999999999999999999999999999999976544 4454 566 8888876553
No 45
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.92 E-value=1.6e-05 Score=82.44 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=59.1
Q ss_pred ceEEEEEEEc-CCCCeecCCCcEEEEEeC------------------------------------------------cee
Q 012142 103 TDGTLAKFLK-QPGDRVEMDEPIAQIETD------------------------------------------------KVT 133 (470)
Q Consensus 103 ~eg~i~~w~v-~~Gd~V~~gd~l~evEtd------------------------------------------------K~~ 133 (470)
..|.|.+++| ++||.|++||+|+++++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 5699999998 999999999999999952 235
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
..|.||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~~ 242 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 242 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCEECTTSCSEEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCCC
Confidence 68999999999999999999999999999997544
No 46
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.89 E-value=1.5e-05 Score=80.32 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=59.9
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCce--------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~-------------------------------------------------- 132 (470)
..|+|.+++|++||.|++||+|+++++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999998642
Q ss_pred --------------------------eeEEecCCCeEEEEEeecCCCeeCC-CCeEEEEEeCCC
Q 012142 133 --------------------------TIDVASPQAGVIQNLIAKEGETVEP-GAKIAVISKSGE 169 (470)
Q Consensus 133 --------------------------~~~i~sp~~G~i~ki~v~eG~~v~~-G~~l~~i~~~~~ 169 (470)
...|.||++|+|.++.+.+|+.|.. |++|+.|.+.+.
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~~ 207 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLSH 207 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCSE
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCCe
Confidence 3579999999999999999999999 999999976543
No 47
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.88 E-value=4.8e-06 Score=81.10 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=58.6
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc---------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK--------------------------------------------------- 131 (470)
..|+|.+|+|++||.|++||+|+++++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998742
Q ss_pred --------------------eeeEEecCCCeEEEEEeecCCCeeCCC--CeEEEEEeCCC
Q 012142 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSGE 169 (470)
Q Consensus 132 --------------------~~~~i~sp~~G~i~ki~v~eG~~v~~G--~~l~~i~~~~~ 169 (470)
....|.||++|+|.++.+++|+.|..| ++|+.|.+.+.
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~~ 168 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 168 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCCc
Confidence 124799999999999999999999999 68999976543
No 48
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.82 E-value=1.7e-05 Score=79.47 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=57.6
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc---------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK--------------------------------------------------- 131 (470)
..|+|.+++|++||.|++||+|+++++..
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 46999999999999999999999998742
Q ss_pred ----------------------------------eeeEEecCCCeEEEEEeecCCCeeCCCCe---EEEEEeCC
Q 012142 132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPGAK---IAVISKSG 168 (470)
Q Consensus 132 ----------------------------------~~~~i~sp~~G~i~ki~v~eG~~v~~G~~---l~~i~~~~ 168 (470)
....|.||++|+|.++.+.+|+.|..|++ |+.|.+.+
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~~ 191 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS 191 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecCC
Confidence 11569999999999999999999999987 88887544
No 49
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.67 E-value=5.4e-05 Score=65.97 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=54.4
Q ss_pred eEEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCC---ee---CCCC-eE
Q 012142 90 LVDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE---TV---EPGA-KI 161 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~---~v---~~G~-~l 161 (470)
...|-+-+.... .-|.|+-+.. ++|++|++||+++.||++|+..+|.||.+|+|.++.....+ .+ +-|+ =|
T Consensus 18 ~~~vGITd~Aq~-~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl 96 (125)
T 3klr_A 18 VGTVGISNFAQE-ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWL 96 (125)
T ss_dssp EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCC
T ss_pred EEEEeeCHHHHh-hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceE
Confidence 444444443332 2256666555 78999999999999999999999999999999998655443 22 2344 36
Q ss_pred EEEEeCC
Q 012142 162 AVISKSG 168 (470)
Q Consensus 162 ~~i~~~~ 168 (470)
+.|...+
T Consensus 97 ~ki~~~~ 103 (125)
T 3klr_A 97 IKMTFSN 103 (125)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 6666544
No 50
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.54 E-value=2.8e-05 Score=79.26 Aligned_cols=66 Identities=26% Similarity=0.364 Sum_probs=57.9
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCce--------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~-------------------------------------------------- 132 (470)
..|+|.+++|++||.|++||+|+++++...
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999986421
Q ss_pred -------eeEEecCCCeEEEEEeecCCCeeCCC--CeEEEEEeCC
Q 012142 133 -------TIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSG 168 (470)
Q Consensus 133 -------~~~i~sp~~G~i~ki~v~eG~~v~~G--~~l~~i~~~~ 168 (470)
...|.||++|+|.++.+++|+.|..| ++|+.|...+
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECCS
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecCC
Confidence 25799999999999999999999995 8999997654
No 51
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.53 E-value=0.00011 Score=65.24 Aligned_cols=63 Identities=22% Similarity=0.249 Sum_probs=46.5
Q ss_pred eEEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCC
Q 012142 90 LVDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~ 153 (470)
...|-+-+.... .-|.|+-+.. ++|++|++||+++.||++|+..+|.||.+|+|.++.-+..+
T Consensus 40 ~~~VGITd~Aq~-~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 40 VVTVGITDYAQE-QLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred EEEEeeCHHHHh-hcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 444444443332 1255555444 78999999999999999999999999999999988655443
No 52
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.47 E-value=0.00011 Score=64.84 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=45.6
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEee
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v 149 (470)
....|-+-+.... .-|.|+-+.. ++|++|++||.++.||++|+..+|.||.+|+|.++.-
T Consensus 34 ~~~~VGITd~Aq~-~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 34 GPVRVGITSVAVE-ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp SCEEEEECHHHHH-HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred CEEEEeeCHHHHh-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 3455555544332 2255555544 7899999999999999999999999999999998753
No 53
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.18 E-value=0.00049 Score=61.87 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=43.3
Q ss_pred eEEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEee
Q 012142 90 LVDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (470)
Q Consensus 90 ~~~i~~P~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v 149 (470)
...|-+-+.... .-|.|+-+.. ++|++|++||+++.||+.|+..+|.||.+|+|.++.-
T Consensus 45 ~~~VGITd~Aq~-~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 45 TVRVGITDYAQS-ALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred EEEEeeCHHHHH-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 344444443322 1244544433 7899999999999999999999999999999988753
No 54
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.05 E-value=2.7e-05 Score=78.78 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=54.9
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCce--------------------------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~-------------------------------------------------- 132 (470)
..|+|.+++|++||.|++||+|+++++...
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 458999999999999999999999987521
Q ss_pred -----------------------------------eeEEecCCCeEEEEEeecCCCeeCCCCe---EEEEEe
Q 012142 133 -----------------------------------TIDVASPQAGVIQNLIAKEGETVEPGAK---IAVISK 166 (470)
Q Consensus 133 -----------------------------------~~~i~sp~~G~i~ki~v~eG~~v~~G~~---l~~i~~ 166 (470)
...|.||++|+|.++.+++|+.|..|++ |+.|.+
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~ 190 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVAD 190 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEcC
Confidence 1349999999999999999999999998 665543
No 55
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.001 Score=55.21 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=43.2
Q ss_pred CCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 121 DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 121 gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|..+|.+|.++-...|.||.+|+|.++++++||.|..|++|+.++...
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k 52 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK 52 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETT
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecc
Confidence 455688888888899999999999999999999999999999998654
No 56
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.51 E-value=0.0063 Score=61.25 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=50.4
Q ss_pred EEEEEcCCCCeecCCCcEEEEEe----CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evEt----dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
+++.+++.||.|++||+|++|.. .....+|.||.+|+|.-. ...-.|..|+.|+.|...
T Consensus 267 l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 267 LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence 77778999999999999999997 356789999999999654 445689999999999654
No 57
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.47 E-value=0.0076 Score=61.09 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=53.5
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe----CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt----dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
| +++..++.||.|++||+|++|+. .+...+|.||.+|+|... .....|..|+.|+.|....
T Consensus 276 G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~~ 340 (354)
T 3cdx_A 276 G-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMEDY 340 (354)
T ss_dssp E-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEEC
T ss_pred E-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeeec
Confidence 5 78888999999999999999998 588899999999999754 5788999999999997544
No 58
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=96.23 E-value=0.011 Score=60.28 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=51.5
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe------CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET------DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt------dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
+=|++..++.||.|++||+|++|.. .....+|.||.+|+|.- ....-.|..|+.|+.|...
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~--~~~~p~V~~G~~l~~i~~~ 364 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPIL--HFASASVHQGTELYKVMTK 364 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEE--ECSSSEECTTCEEEEEEES
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEE--EeCCCccCCCCEEEEEeee
Confidence 3456689999999999999999998 56789999999999954 4555799999999998653
No 59
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.11 E-value=0.0068 Score=46.47 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=30.8
Q ss_pred EecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 136 VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 136 i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
|.||.+|+|.++++++||.|..|++|+.++...
T Consensus 2 v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 34 (72)
T 1z6h_A 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMK 34 (72)
T ss_dssp EECCSSEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred EECcccEEEEEEEcCCcCEECCCCEEEEEECCc
Confidence 689999999999999999999999999998754
No 60
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.06 E-value=0.0092 Score=45.82 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=32.1
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
..|.||.+|+|.++++++||.|..|++|+.++...
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 40 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMK 40 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEeccc
Confidence 46889999999999999999999999999998654
No 61
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=95.99 E-value=0.0076 Score=46.88 Aligned_cols=36 Identities=28% Similarity=0.582 Sum_probs=32.7
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
...|.|+.+|+|.++++++|+.|..|++|+.++...
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~ 43 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK 43 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccc
Confidence 356899999999999999999999999999998654
No 62
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=95.72 E-value=0.011 Score=49.73 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=32.2
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
+.|.|+.+|+|.++++++|+.|..|++|+.++..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 6789999999999999999999999999999875
No 63
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=95.29 E-value=0.013 Score=46.88 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=32.2
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
..|.||.+|+|.++++++|+.|..|++|+.++...
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 40 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK 40 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEECSS
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEEecc
Confidence 46899999999999999999999999999998654
No 64
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.26 E-value=0.025 Score=51.22 Aligned_cols=66 Identities=24% Similarity=0.385 Sum_probs=56.2
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecC----CCcEEEEEeCceeeEEecCCCeEEEEE-------------------
Q 012142 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQNL------------------- 147 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~----gd~l~evEtdK~~~~i~sp~~G~i~ki------------------- 147 (470)
..+.-| -.|+|+.+. +..|.+-. |+-++...++ ..+.||.+|+|..+
T Consensus 13 ~~i~aP------~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLi 82 (161)
T 1f3z_A 13 IEIIAP------LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV 82 (161)
T ss_dssp EEEECS------SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEEec------CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEE
Confidence 346666 679999986 78888776 8999988886 47899999999988
Q ss_pred ----------------eecCCCeeCCCCeEEEEEe
Q 012142 148 ----------------IAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 148 ----------------~v~eG~~v~~G~~l~~i~~ 166 (470)
++++||.|..|++|+.++.
T Consensus 83 HiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 83 HFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp ECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred EECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 8999999999999999963
No 65
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=95.17 E-value=0.028 Score=50.47 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=56.0
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecC----CCcEEEEEeCceeeEEecCCCeEEEE--------------------
Q 012142 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQN-------------------- 146 (470)
Q Consensus 91 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~----gd~l~evEtdK~~~~i~sp~~G~i~k-------------------- 146 (470)
..+.-| -.|+|+.+. ++.|.|-. |+-++...++ ..+.||.+|+|..
T Consensus 8 ~~i~aP------~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi 77 (154)
T 2gpr_A 8 LKVLAP------CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL 77 (154)
T ss_dssp EEEECS------SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred CEEEec------CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence 456666 679999984 88888777 8999988886 4899999999997
Q ss_pred ---------------EeecCCCeeCCCCeEEEEEe
Q 012142 147 ---------------LIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 147 ---------------i~v~eG~~v~~G~~l~~i~~ 166 (470)
++|++||.|..|++|+.++.
T Consensus 78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred EECcchhhcCCCceEEEEcCCCEEcCCCEEEEECH
Confidence 48999999999999999963
No 66
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=94.62 E-value=0.073 Score=53.22 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=49.6
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe----CceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt----dK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
+-+....++.||.|++||+|+++-. .+...+|.||++|+|.-. ...-.|..|+.|+.|...
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p~V~~Gd~l~~ia~~ 329 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVAILARP 329 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCCeeCCCCEEEEEeeE
Confidence 3455678999999999999999965 567889999999998544 456688999999988643
No 67
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=94.51 E-value=0.035 Score=53.46 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 113 ~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
+.|+--..=..-+.|+.. -...|.++.+|+|.++++++||.|..|++|+.++..
T Consensus 3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 334444444556677765 467899999999999999999999999999999754
No 68
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=94.28 E-value=0.037 Score=45.59 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=32.5
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
...|.|+.+|+|.++++++|+.|..|++|+.|+...
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~ 49 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK 49 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred ceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence 456889999999999999999999999999998654
No 69
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=94.25 E-value=0.023 Score=51.48 Aligned_cols=60 Identities=28% Similarity=0.415 Sum_probs=51.8
Q ss_pred ceEEEEEEEcCCCCeecC----CCcEEEEEeCceeeEEecCCCeEEEEE-------------------------------
Q 012142 103 TDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQNL------------------------------- 147 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~----gd~l~evEtdK~~~~i~sp~~G~i~ki------------------------------- 147 (470)
-.|+|+.+ .+..|.+-. |+-++...++ ..+.||.+|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 56999997 778888766 8899988773 47899999999988
Q ss_pred ----eecCCCeeCCCCeEEEEEe
Q 012142 148 ----IAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 148 ----~v~eG~~v~~G~~l~~i~~ 166 (470)
+|++||.|..|++|+.++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEECH
T ss_pred ccEEEEeCCCEEcCCCEEEEECH
Confidence 8999999999999999963
No 70
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=94.25 E-value=0.038 Score=43.29 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=32.0
Q ss_pred eEEecCCCeEEEEE-------eecCCCeeCCCCeEEEEEeCC
Q 012142 134 IDVASPQAGVIQNL-------IAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 134 ~~i~sp~~G~i~ki-------~v~eG~~v~~G~~l~~i~~~~ 168 (470)
..|.||..|+|.++ ++++||.|..|++|+.++...
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k 46 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMK 46 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETT
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEecc
Confidence 46899999999998 999999999999999998754
No 71
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=94.11 E-value=0.025 Score=46.16 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=31.5
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
...|.||.+|+|.++++++||.|..|++|+.++...
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k 60 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMK 60 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC--
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEeccc
Confidence 456889999999999999999999999999998643
No 72
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=93.60 E-value=0.059 Score=50.01 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=26.3
Q ss_pred EEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEE
Q 012142 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (470)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~k 146 (470)
.++|++|+.|++||.||+-. .|-+.++|+|.+
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d 53 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 53 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence 46899999999999999754 777888887743
No 73
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=93.58 E-value=0.083 Score=52.74 Aligned_cols=57 Identities=25% Similarity=0.254 Sum_probs=45.8
Q ss_pred cCCCCeecCCCcEEEEEeC-ceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 112 KQPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 112 v~~Gd~V~~gd~l~evEtd-K~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
++.|+--..-..-+.|+.+ .-...|.++.+|+|.++++++|+.|..|++|+.|+..+
T Consensus 35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD 92 (359)
T ss_dssp CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 3444434444556788875 66899999999999999999999999999999998654
No 74
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=93.29 E-value=0.042 Score=42.71 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=28.7
Q ss_pred ecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 137 ASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 137 ~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.++.+|+|.++++++||.|..|++|+.++...
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k 42 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDK 42 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEESSS
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEccc
Confidence 35789999999999999999999999998654
No 75
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=93.12 E-value=0.089 Score=52.12 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=43.2
Q ss_pred EcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
.++.|+--..=..-+.|+.. -...|.++.+|+|.++++++||.|+.|++|+.++..
T Consensus 10 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 10 IVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp ---CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 34555544444556677766 467899999999999999999999999999999754
No 76
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=92.69 E-value=0.2 Score=58.33 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=34.1
Q ss_pred EEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCC
Q 012142 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG 152 (470)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG 152 (470)
.++|++||.|++||.||+. |--+..|-+.++|+|.=..+.+|
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d~~~g 1043 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDG 1043 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEESCCBT
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEEeeeccC
Confidence 4789999999999999987 67788899999998864444444
No 77
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=92.67 E-value=0.13 Score=40.02 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=26.3
Q ss_pred CeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 141 AGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 141 ~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+|+|.++++++||.|..|++|+.++...
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~ 41 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDK 41 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCC
Confidence 8999999999999999999999998654
No 78
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=92.40 E-value=0.11 Score=41.46 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=27.7
Q ss_pred CCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 139 p~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..+|+|.++++++||.|..|++|+.++....
T Consensus 17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~ 47 (87)
T 3crk_C 17 MTMGTVQRWEKKVGEKLSEGDLLAEIETDXA 47 (87)
T ss_dssp CCEEEEEEECSCTTCEECTTCEEEEEECSSC
T ss_pred CCcEEEEEEEcCCCCEEcCCCEEEEEECCcc
Confidence 4689999999999999999999999987543
No 79
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=92.39 E-value=0.072 Score=41.62 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=28.3
Q ss_pred cCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 138 SPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 138 sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
++.+|+|.++++++||.|..|++|+.++....
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~ 43 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIETDKV 43 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEECSSC
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEccce
Confidence 45799999999999999999999999986543
No 80
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=92.17 E-value=0.16 Score=41.24 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=27.7
Q ss_pred CCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 139 p~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..+|+|.++++++||.|..|++|+.++....
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~ 46 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQSDKA 46 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEECSSC
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEcCCc
Confidence 4689999999999999999999999986543
No 81
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.03 E-value=0.16 Score=41.85 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=27.2
Q ss_pred CCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 140 QAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 140 ~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|+|.++++++||.|..|++|+.++....
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~ 49 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIETDKA 49 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEECSSC
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEEcccc
Confidence 589999999999999999999999987553
No 82
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=91.99 E-value=0.11 Score=40.64 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=28.8
Q ss_pred ecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 137 ASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 137 ~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
-++..|+|.++++++||.|..|++|+.++...
T Consensus 11 g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k 42 (81)
T 1gjx_A 11 GGHENVDIIAVEVNVGDTIAVDDTLITLETDK 42 (81)
T ss_dssp SSCSSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred CCCCcEEEEEEEcCCCCEECCCCEEEEEEeCC
Confidence 35789999999999999999999999998654
No 83
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=91.55 E-value=0.18 Score=51.86 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=45.3
Q ss_pred EcCCCCeecCCCcEEEEEeC-ceeeEEecCCCeEEEEEee-cCCCeeCCCCeEEEEEeCC
Q 012142 111 LKQPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~evEtd-K~~~~i~sp~~G~i~ki~v-~eG~~v~~G~~l~~i~~~~ 168 (470)
.++.|+--..=...+.|+.| .-...|.++.+|+|.++++ ++||.|+.|++|+.|+..+
T Consensus 98 ~v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~ 157 (413)
T 3ne5_B 98 TVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD 157 (413)
T ss_dssp ECEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCS
T ss_pred EEEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHH
Confidence 34444444445566677754 5578899999999999998 9999999999999998544
No 84
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=91.31 E-value=0.18 Score=42.30 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=27.2
Q ss_pred CCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 140 QAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 140 ~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.+|+|.++++++||.|..|++|+.|+....
T Consensus 20 ~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~ 49 (108)
T 2dne_A 20 QAGTIARWEKKEGDKINEGDLIAEVETDKA 49 (108)
T ss_dssp CEEEEEECSSCTTCEECTTSEEEEEECSSC
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEEEcCcc
Confidence 589999999999999999999999987543
No 85
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=90.98 E-value=0.23 Score=44.83 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=41.4
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeE-EecCCCeEEEEEeecC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQNLIAKE 151 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~-i~sp~~G~i~ki~v~e 151 (470)
.||..+-..+.+||+|.+||.|+-|.|-|.++- +.||.+|+|.-+.--+
T Consensus 107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p 156 (169)
T 3d4r_A 107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIP 156 (169)
T ss_dssp ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEET
T ss_pred eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecC
Confidence 357777888999999999999999999999765 9999999987654333
No 86
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=90.91 E-value=0.14 Score=51.70 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=40.0
Q ss_pred cCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 112 v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
++.|+--..-..-+.|+.. -...|.++.+|+|.++++++||.|..|++|+.|+..
T Consensus 23 v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 23 LEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp ------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred EEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 4444433334455677765 367899999999999999999999999999999754
No 87
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=90.85 E-value=0.2 Score=50.71 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=36.5
Q ss_pred EEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEe-----------------------------ecCCCeeCCCC
Q 012142 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI-----------------------------AKEGETVEPGA 159 (470)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~-----------------------------v~eG~~v~~G~ 159 (470)
.++|++||.|++||.||+-. .|-+..+|+|.... +++|+.|.+|+
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G~ 135 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGL 135 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTTC
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccCc
Confidence 57899999999999999954 56666666664322 66777888888
Q ss_pred eEE
Q 012142 160 KIA 162 (470)
Q Consensus 160 ~l~ 162 (470)
+|+
T Consensus 136 vla 138 (352)
T 2xhc_A 136 PLS 138 (352)
T ss_dssp BSB
T ss_pred EEe
Confidence 777
No 88
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=90.39 E-value=0.36 Score=41.87 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=27.2
Q ss_pred CCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 140 QAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 140 ~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
.+|+|.++++++||.|..|++|+.++....
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~ 69 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETDKA 69 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSSC
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcCcc
Confidence 579999999999999999999999987553
No 89
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=89.97 E-value=0.33 Score=37.73 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
+..++.-| ..|+|.++++++||.|..|++|+.|+..
T Consensus 40 ~~~~i~Ap------~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 40 ASMEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp CEEEEECS------SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred eEEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 34567777 6799999999999999999999999753
No 90
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=89.69 E-value=0.33 Score=44.86 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=37.7
Q ss_pred EEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCe
Q 012142 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154 (470)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~ 154 (470)
.++|++||.|++||.||+. |..+..|-+.++|+|.=--+.+|.+
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 4599999999999999976 8999999999999997666666643
No 91
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=88.93 E-value=0.17 Score=46.91 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=36.3
Q ss_pred cCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEE--------------------------E--eecCCCeeCCCCeEEE
Q 012142 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN--------------------------L--IAKEGETVEPGAKIAV 163 (470)
Q Consensus 112 v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~k--------------------------i--~v~eG~~v~~G~~l~~ 163 (470)
|++|++|+.||+|+ - ...|-|..+|+|.= + +|++||.|..|++|+.
T Consensus 85 V~dG~~V~~GdvLA---K---d~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D 158 (193)
T 2xha_A 85 LRVGTKVKQGLPLS---K---NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE 158 (193)
T ss_dssp CCTTCEECTTSBSS---T---TSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred cCCCCEEcCCCEEe---c---CCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence 89999999999998 2 33456777777641 3 8899999999998875
No 92
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=87.92 E-value=0.3 Score=38.71 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCcEEEEEeC
Q 012142 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 89 ~~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
+..++.-| ..|+|.++++++||.|..|++|+.|+.+
T Consensus 38 ~~~~i~Ap------~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 38 ASMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SEEEEECS------SCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred cEEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 46778877 6799999999999999999999999864
No 93
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=87.48 E-value=0.12 Score=40.56 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 139 p~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
..+|+|.++++++||.|..|++|+.++...
T Consensus 14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 43 (80)
T 1pmr_A 14 VADATVATWHKKPGDAVVRDEVLVEIETDK 43 (80)
T ss_dssp CSCEECCBCCCCTTCCBSSSCCBCBCCSSS
T ss_pred CccEEEEEEECCCcCEECCCCEEEEEEccc
Confidence 468999999999999999999999997543
No 94
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=87.38 E-value=0.13 Score=51.51 Aligned_cols=56 Identities=27% Similarity=0.324 Sum_probs=44.2
Q ss_pred cCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 112 v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
++.|+--..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..+
T Consensus 12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCHH
T ss_pred EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCHH
Confidence 4445544455556777754 4668999999999999999999999999999997643
No 95
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=86.58 E-value=0.63 Score=51.07 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=33.4
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
...|.||..|+|.+++|++||.|..||+|+.++...-
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm 648 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKM 648 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSSC
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecCc
Confidence 4569999999999999999999999999999986653
No 96
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=82.85 E-value=1.1 Score=52.39 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=33.8
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
...|.||..|+|.++++++||.|+.|++|++|+...-
T Consensus 1167 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~ 1203 (1236)
T 3va7_A 1167 AELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKT 1203 (1236)
T ss_dssp CEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETTE
T ss_pred CcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecCc
Confidence 4569999999999999999999999999999987654
No 97
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=81.71 E-value=1.2 Score=51.71 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=33.1
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|.||..|+|.+++|++||.|..|++|+.++...-
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~ 1113 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKM 1113 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEESSSC
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEEeccc
Confidence 579999999999999999999999999999986653
No 98
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=80.02 E-value=1.1 Score=49.48 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=32.8
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|.||..|+|.+++|++||.|..|++|+.++...-
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKm 685 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKM 685 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSC
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEecccc
Confidence 469999999999999999999999999999986543
No 99
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=76.88 E-value=0.62 Score=47.17 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=19.5
Q ss_pred cCCCCeecCCCcEEEEEeCceeeEEecCCCeEEE
Q 012142 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ 145 (470)
Q Consensus 112 v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ 145 (470)
|++|++|+.||+|+ - ...|-|..+|+|.
T Consensus 125 v~~g~~v~~G~vla---k---~~aiiaeidG~V~ 152 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS---K---NEEYICELDGKIV 152 (352)
T ss_dssp CCTTCEECTTCBSB---S---SSSCBCCSCEEEE
T ss_pred cCCCCEEccCcEEe---c---CceEEeccceEEE
Confidence 89999999999888 1 2334455555553
No 100
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=75.04 E-value=0.6 Score=51.23 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=0.0
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.-.|.||..|+|.++++++||.|..|++|+.++...
T Consensus 602 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 637 (675)
T 3u9t_A 602 QGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMK 637 (675)
T ss_dssp ------------------------------------
T ss_pred CCeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEecc
Confidence 346899999999999999999999999999998654
No 101
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=74.22 E-value=2.2 Score=49.64 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=28.5
Q ss_pred eEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 134 ~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
..|.||..|+|.++++++||.|..|++|+.++...-
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEamKm 1131 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKM 1131 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEEC---
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEcccc
Confidence 579999999999999999999999999999986543
No 102
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=73.87 E-value=55 Score=34.41 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=29.0
Q ss_pred EEcEEEEEEEecccccChHHHHHHHHHHHHHhc
Q 012142 429 PRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 461 (470)
Q Consensus 429 ~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE 461 (470)
.+..|.|++.|+-...|...+..||+.+++.|-
T Consensus 483 f~g~L~l~~~yn~a~~~~e~v~~~l~~v~~~L~ 515 (519)
T 3fot_A 483 WRDASTLNIIYNDANYTEAEVQKYLQSIVEFML 515 (519)
T ss_dssp ETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 344577999999999999999999999999873
No 103
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=73.57 E-value=0.68 Score=48.03 Aligned_cols=30 Identities=10% Similarity=0.278 Sum_probs=0.0
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCce
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~ 132 (470)
.+|+|.++++++||.|..||+|++|+.+..
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp ------------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 679999999999999999999999987543
No 104
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=73.29 E-value=1.3 Score=39.54 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=37.1
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCcee---------eEEecCCCeEEEEEeecCCCeeCCCCeEEEE
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVT---------IDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~---------~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i 164 (470)
+|+=.+.+|++||+|++||+|+++.-++.. +-+.- .+ ...+....+..+..|+.++.+
T Consensus 87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NG--GKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CS--SCCCSCBCCEEECTTCEEEEE
T ss_pred CCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CC--cceEEEccCceEcCCCEEEEe
Confidence 466678899999999999999998753221 12222 11 112233345567888887765
No 105
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=69.95 E-value=2.4 Score=38.86 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=23.6
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
+|+=-+++|++||+|++||+|+++.-++
T Consensus 114 ~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 114 KGEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCccceEEEeCcCEEcCCCEEEEECHHH
Confidence 3666789999999999999999997543
No 106
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=69.48 E-value=0.96 Score=42.98 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=0.0
Q ss_pred CCCeEEEEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 139 p~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
-..|+|.++++++||.|..|++|+.|+.+..
T Consensus 15 m~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~ 45 (229)
T 1zy8_K 15 MEEGNIVKWLKKEGEAVSAGDALCEIETDKA 45 (229)
T ss_dssp -------------------------------
T ss_pred CCcEEEEEEecCCCCEeCCCCEEEEEecCCc
Confidence 4689999999999999999999999986543
No 107
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=68.46 E-value=3.6 Score=41.31 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=40.7
Q ss_pred EcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.++.|+.|++||+|+++- | .+|.+|++|.+.- .. .-.|..|+.++.+....
T Consensus 280 ~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i~~~~ 330 (350)
T 2bco_A 280 NVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRHVAIGQRAALMVCEV 330 (350)
T ss_dssp TCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTTCCTTSEEEEEEEEC
T ss_pred cccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCCCCCCcEEEEEEEEc
Confidence 468999999999999994 4 6889999998632 33 67999999888876544
No 108
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=68.37 E-value=5.3 Score=35.81 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeC
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
|+=.+.+|++||+|++||+|+++.-+
T Consensus 93 G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 93 GEGFKRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECHH
T ss_pred CCccEEEEeCcCEECCCCEEEEECHH
Confidence 44456699999999999999998743
No 109
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=56.19 E-value=7.5 Score=37.97 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCeecCCCcEEEEE
Q 012142 106 TLAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evE 128 (470)
--++|++++|+.|++||+|++++
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~ 93 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLE 93 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEE
Confidence 34678899999999999888887
No 110
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=55.88 E-value=9.3 Score=38.55 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=30.5
Q ss_pred ceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEe
Q 012142 131 KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 131 K~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~ 166 (470)
+-..-+.||.+|.+. ..++.||.|+.|++|+.|.+
T Consensus 288 ~~~~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 288 KNYRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp GGEEEEECSSCEEEE-ECSCTTCCBCTTCEEEEEEC
T ss_pred CCcEEEecCCCEEEE-EeCCCCCEeCCCCEEEEEEc
Confidence 334568999999995 78999999999999999986
No 111
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=54.84 E-value=11 Score=37.47 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=30.3
Q ss_pred ceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 131 KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 131 K~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
....-|.||.+|.+ +..++.||.|+.|++|+.|.+.
T Consensus 255 ~~~~~v~A~~~Gl~-~~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 255 DGDCYLFSEHDGLF-EIMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp CSCCCEECSSCEEE-EESSCTTCEECTTCEEEEEECS
T ss_pred CCcEEEeCCCCeEE-EEcCCCCCEEcCCCEEEEEEcC
Confidence 33456799999987 4579999999999999999875
No 112
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=54.32 E-value=7.2 Score=38.14 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=17.5
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++||.|++||+|++++
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~ 94 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVR 94 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEE
Confidence 678888888888888888877
No 113
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=54.15 E-value=7.3 Score=38.17 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=17.1
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++|+.|++||+|++++
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~ 97 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELK 97 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEE
Confidence 478888888888888888877
No 114
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=53.90 E-value=5.2 Score=35.88 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.1
Q ss_pred eEEEEEEEcCCCCeecCCCcEEEEEeC
Q 012142 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 104 eg~i~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
+|+=.+.+|++||+|++||+|+++.-+
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (162)
T 1ax3_A 92 KGEGFTSFVSEGDRVEPGQKLLEVDLD 118 (162)
T ss_dssp TTTTEEESCCCCSEECSEEEEEEECHH
T ss_pred CCCccEEEEeCCCEEcCCCEEEEECHH
Confidence 566678899999999999999998754
No 115
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=53.08 E-value=8.1 Score=38.09 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=16.8
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++|+.|++||+|++++
T Consensus 86 v~~~~~dG~~v~~g~~v~~i~ 106 (300)
T 3l0g_A 86 YEIHKKDGDITGKNSTLVSGE 106 (300)
T ss_dssp EEECCCTTCEECSSCEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEE
Confidence 578888888888888888776
No 116
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=52.86 E-value=9.1 Score=36.99 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=15.6
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|.+++|+.|..||+|++|+
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~ 80 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIR 80 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEE
Confidence 457777777777777777776
No 117
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=52.41 E-value=6.8 Score=38.31 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=16.0
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++||.|++||+|++++
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~ 93 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIE 93 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEE
Confidence 567778888888777777776
No 118
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=51.81 E-value=8.4 Score=37.96 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=13.3
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|++++|+.|.+||+|++|+
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~ 108 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELR 108 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 456666666666666666665
No 119
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=50.42 E-value=9 Score=38.11 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=13.9
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|.+++|+.|.+||+|++|+
T Consensus 110 v~~~~~dG~~v~~g~~l~~v~ 130 (320)
T 3paj_A 110 IEWHVQDGDTLTPNQTLCTLT 130 (320)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEeCCCCEecCCCEEEEEE
Confidence 456666666666666666665
No 120
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=49.67 E-value=1.9e+02 Score=28.14 Aligned_cols=140 Identities=11% Similarity=0.051 Sum_probs=78.5
Q ss_pred ccchHHHHHHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEecC--------Cce---EEee-EcCCCCCCHHHHHHH
Q 012142 296 KLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTK--------KGL---VVPV-IRNSERMNFAEIEKE 363 (470)
Q Consensus 296 kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t~--------~GL---~vPv-I~~a~~~sl~eIa~~ 363 (470)
++|+..++.-|.+.+|.++-. + ++-||+.++.- -|. .+|+ ++-....++.++.++
T Consensus 231 ~~t~~~~l~aa~~~~L~~~~g-~------------dv~ig~~~~~R~~~~~~~~vG~f~n~lplr~~~~~~~t~~~~l~~ 297 (436)
T 1l5a_A 231 QIGWPDALVALCALYLESAEP-D------------APWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQ 297 (436)
T ss_dssp TCCHHHHHHHHHHHHHHHHST-T------------CCEEEEEECCCTTSGGGGSCSCCCEEEEEECCCCTTCBHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhC-C------------ceEEeeecccCCChHHhcCcceEEEEEEEEEecCCCCCHHHHHHH
Confidence 568999999999999998732 2 34566666521 132 4566 333456699999999
Q ss_pred HHHHHHHHhcCC-CCcc-------------ccCCccEEEecCCC--CCCcceeeeeCCCCeEEEEecceeeeEE--E--e
Q 012142 364 ISTLAKKANDGS-ISID-------------EMAGGTFTISNGGV--YGSLLSTPIINPPQSAILGMHSIVNRPM--V--V 423 (470)
Q Consensus 364 l~~l~~~ar~g~-L~~~-------------d~~ggTftISNlG~--~G~~~~~pii~ppq~aIL~vG~i~~~pv--~--~ 423 (470)
+++-...+.+.. +..+ .+..-.|++.|... ++....... .+.-+...+-.+ . .
T Consensus 298 v~~~~~~~~~h~~~~~~~i~~~l~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~l~v~~~~ 370 (436)
T 1l5a_A 298 SGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELK-------VLASGSAEGINFTFRGSP 370 (436)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHTTCCTTCCBCCCSEEEEECCCCCCCTTCEEEEE-------EEEECCCCSEEEEEEECT
T ss_pred HHHHHHHHhhhcCCCHHHHHHHhcccccCCCccceEEEeeccCccccCCCeeEEE-------ecCCCCccceEEEEEecC
Confidence 888776665433 2111 11222333333221 111111100 011111111000 1 1
Q ss_pred CCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHhc
Q 012142 424 GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 461 (470)
Q Consensus 424 ~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~LE 461 (470)
+| .+.+.|.||-.+++...+.+|+..+..+|+
T Consensus 371 ~~------~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~ 402 (436)
T 1l5a_A 371 QH------ELCLDITADLASYPQSHWQSHCERFPRFFE 402 (436)
T ss_dssp TS------CEEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred CC------cEEEEEEeChhhCCHHHHHHHHHHHHHHHH
Confidence 22 366999999999999999988888877764
No 121
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=49.50 E-value=9.5 Score=37.45 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=18.3
Q ss_pred EEEEEcCCCCeecCCCcEEEEE
Q 012142 107 LAKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evE 128 (470)
-++|.+++|+.|..||+|++|+
T Consensus 86 ~v~~~~~dG~~v~~g~~~~~v~ 107 (296)
T 1qap_A 86 RLTWHVDDGDAIHANQTVFELQ 107 (296)
T ss_dssp EEEESCCTTCEECTTCEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3678888888888888888887
No 122
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=48.27 E-value=27 Score=36.58 Aligned_cols=43 Identities=14% Similarity=0.393 Sum_probs=35.5
Q ss_pred EEeCceeeEEecCCCeEE-----------------------------EEEeecCCCeeCCCCeEEEEEeCCC
Q 012142 127 IETDKVTIDVASPQAGVI-----------------------------QNLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 127 vEtdK~~~~i~sp~~G~i-----------------------------~ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
+...+...+|.|+.+|+| ..++++.||.|..|++|+.|-...+
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCCh
Confidence 445677888889999988 4577889999999999999987654
No 123
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=47.02 E-value=20 Score=31.08 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=27.5
Q ss_pred EecCCCeEEEEEee-cCCCeeCCCCeEEEEEeCCC
Q 012142 136 VASPQAGVIQNLIA-KEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 136 i~sp~~G~i~ki~v-~eG~~v~~G~~l~~i~~~~~ 169 (470)
+.+|.-|.|..+.+ ++|+.|..|++|+.|+....
T Consensus 39 ~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~ 73 (136)
T 1zko_A 39 HAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKA 73 (136)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSC
T ss_pred hhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccE
Confidence 34566777777777 99999999999999986553
No 124
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=44.64 E-value=7.8 Score=35.28 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=9.7
Q ss_pred eecCCCeeCCCCeEEEEE
Q 012142 148 IAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 148 ~v~eG~~v~~G~~l~~i~ 165 (470)
.|++||.|..||+|+.+.
T Consensus 86 ~V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 86 QVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp CCCTTCEECTTCEEEEEC
T ss_pred ccCCCCEEcCCCEEEeec
Confidence 355555555555555554
No 125
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=44.26 E-value=11 Score=37.03 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=13.4
Q ss_pred EEEEcCCCCeecCCCcEEEEE
Q 012142 108 AKFLKQPGDRVEMDEPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evE 128 (470)
++|.+++|+.|..||+|++|+
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~ 93 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVR 93 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEE
Confidence 456666666666666666665
No 126
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=42.35 E-value=36 Score=35.17 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=33.2
Q ss_pred EeCceeeEEecCCCeEEE-------------------------------EEeecCCCeeCCCCeEEEEEeCCC
Q 012142 128 ETDKVTIDVASPQAGVIQ-------------------------------NLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 128 EtdK~~~~i~sp~~G~i~-------------------------------ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
...|...+|.|+.+|+|. .++.+.||.|..|++|+.|-...+
T Consensus 330 ~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 330 PKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp CCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 445667777788888774 467888999999999999987654
No 127
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=42.14 E-value=13 Score=38.60 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=11.0
Q ss_pred eecCCCeeCCCCeEEEEE
Q 012142 148 IAKEGETVEPGAKIAVIS 165 (470)
Q Consensus 148 ~v~eG~~v~~G~~l~~i~ 165 (470)
+++.||.|..|++|+.|-
T Consensus 384 ~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 384 NKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp SCCTTCEECTTSEEEEEE
T ss_pred ecCCcCEeCCCCeEEEEe
Confidence 555666666666666665
No 128
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=41.47 E-value=33 Score=35.34 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=32.8
Q ss_pred EeCceeeEEecCCCeEEE-------------------------------EEeecCCCeeCCCCeEEEEEeCCC
Q 012142 128 ETDKVTIDVASPQAGVIQ-------------------------------NLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 128 EtdK~~~~i~sp~~G~i~-------------------------------ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
...+ ..+|.|+.+|+|. .++.+.||.|..|++|+.|-...+
T Consensus 323 ~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 323 PLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp CCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 4456 7778888888874 467888999999999999987654
No 129
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=40.92 E-value=25 Score=31.62 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=33.6
Q ss_pred ecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeCCCc
Q 012142 118 VEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (470)
Q Consensus 118 V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~~~ 170 (470)
+++|+.|+.++ .+|.-.-..+.+|+.|..|+.|+.+.+...+
T Consensus 96 lkkGt~L~lvp-----------aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGE 137 (169)
T 3d4r_A 96 LKAGTKLISVP-----------AEGYKVYPIMDFGFRVLKGYRLATLESKKGD 137 (169)
T ss_dssp ECTTCBCEEEE-----------ECSSEEEECCCCSEEECTTCEEEEEECTTCC
T ss_pred EcCCCEEEEEE-----------eCceEEEEEcCcCcEeccCCeEEEEEecCce
Confidence 56777888876 4566667789999999999999999876543
No 130
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=39.77 E-value=30 Score=34.43 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=31.4
Q ss_pred EeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 128 ETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 128 EtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
+..+...-+.|+.+|.+ +..++.|+.|+.|++|+.+.+.
T Consensus 262 ~~~~~~~~v~A~~~G~~-~~~~~~g~~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 262 MVREADAYVMAPRTGLF-EPTHYVGEEVRTGETAGWIHFV 300 (354)
T ss_dssp ECCCGGGEEECSSCEEE-EESCCTTCEECTTSEEEEEECT
T ss_pred eecCCcEEEECCCCEEE-EEeCCCCCEeCCCCEEEEEECC
Confidence 33344566889999965 6678999999999999999864
No 131
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=38.96 E-value=19 Score=37.27 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=24.1
Q ss_pred CceEEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 102 ~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
++.+-=+.++++.||+|++||+|+.|=+++
T Consensus 372 ~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 372 IDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 333334789999999999999999997764
No 132
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=38.95 E-value=25 Score=35.90 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=26.4
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhc
Q 012142 434 YIALTYDHRLIDGREAVFFLRRIKDIVE 461 (470)
Q Consensus 434 ~ltls~DHRviDGa~aa~Fl~~lk~~LE 461 (470)
-|++++.|.+.||.-+..|++.|.++..
T Consensus 163 ~lg~~~~H~v~Dg~~~~~Fl~awa~~~r 190 (454)
T 2e1v_A 163 AIGITNHHCLGDASTRFCFLKAWTSIAR 190 (454)
T ss_dssp EEEEEECGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeeecchhHHHHHHHHHHHHhc
Confidence 3999999999999999999999999876
No 133
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=38.72 E-value=19 Score=37.17 Aligned_cols=27 Identities=41% Similarity=0.617 Sum_probs=22.8
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEeCc
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
+-=+.++++.||+|++||+|+.|=+++
T Consensus 367 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 367 GVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp TCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 333789999999999999999997654
No 134
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=38.45 E-value=26 Score=35.67 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=25.6
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhc
Q 012142 435 IALTYDHRLIDGREAVFFLRRIKDIVE 461 (470)
Q Consensus 435 ltls~DHRviDGa~aa~Fl~~lk~~LE 461 (470)
|++++.|.+.||.-+..|++.|.+...
T Consensus 152 lg~~~~H~v~Dg~~~~~Fl~~wa~~~r 178 (439)
T 4g22_A 152 LGVGMRHHAADGFSGLHFINSWSDMAR 178 (439)
T ss_dssp EEEEECTTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEeeeccCcHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998874
No 135
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=38.22 E-value=25 Score=35.73 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=26.5
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhcC
Q 012142 434 YIALTYDHRLIDGREAVFFLRRIKDIVED 462 (470)
Q Consensus 434 ~ltls~DHRviDGa~aa~Fl~~lk~~LE~ 462 (470)
-|++++.|.+.||.-+..|++.|.+....
T Consensus 149 ~lg~~~~H~v~Dg~g~~~Fl~awa~~~rg 177 (451)
T 2rkv_A 149 ILTVNGQHGAMDMVGQDAVIRLLSKACRN 177 (451)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred eeeeeehhccccHHHHHHHHHHHHHHhcC
Confidence 39999999999999999999999988754
No 136
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=37.36 E-value=40 Score=28.93 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=27.3
Q ss_pred ecCCCeEEEEEee-cCCCeeCCCCeEEEEEeCCC
Q 012142 137 ASPQAGVIQNLIA-KEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 137 ~sp~~G~i~ki~v-~eG~~v~~G~~l~~i~~~~~ 169 (470)
..+.-|.|..+.+ ++|+.|..|++|+.|+....
T Consensus 31 a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~ 64 (131)
T 1hpc_A 31 AQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKA 64 (131)
T ss_dssp HHHHHCSEEEEECCCTTCEECBTSEEEEEEESSC
T ss_pred hcccCCCceEEEecCCCCEEeCCCEEEEEEecce
Confidence 3566787888887 99999999999999986543
No 137
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=36.76 E-value=26 Score=35.36 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=25.7
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhc
Q 012142 435 IALTYDHRLIDGREAVFFLRRIKDIVE 461 (470)
Q Consensus 435 ltls~DHRviDGa~aa~Fl~~lk~~LE 461 (470)
|++++.|.+.||.-+..|++.|.++..
T Consensus 154 lg~~~~H~v~Dg~~~~~fl~~wa~~~r 180 (421)
T 2bgh_A 154 IGVNLSHKIADVLSLATFLNAWTATCR 180 (421)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEeeEEechHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998875
No 138
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=36.71 E-value=26 Score=35.69 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=26.3
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhc
Q 012142 434 YIALTYDHRLIDGREAVFFLRRIKDIVE 461 (470)
Q Consensus 434 ~ltls~DHRviDGa~aa~Fl~~lk~~LE 461 (470)
-|++++.|.+.||.-+..|++.|.++..
T Consensus 158 ~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r 185 (453)
T 2xr7_A 158 SIGFTNHHVAGDGATIVKFVRAWALLNK 185 (453)
T ss_dssp EEEEEECTTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEeeeeeeechhHHHHHHHHHHHHhh
Confidence 3999999999999999999999999876
No 139
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=36.65 E-value=22 Score=37.17 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.7
Q ss_pred EEEEcCCCCeecCCCcEEEEEeCc
Q 012142 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evEtdK 131 (470)
+.++++.||+|++||+|+.|=+++
T Consensus 413 i~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 413 AELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp EEECSCTTCEECTTCEEEEEEESS
T ss_pred eEEEccCCCEECCCCeEEEEEcCC
Confidence 789999999999999999997654
No 140
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=36.53 E-value=16 Score=35.63 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=13.2
Q ss_pred EeecCCCeeCCCCeEEEEEeC
Q 012142 147 LIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 147 i~v~eG~~v~~G~~l~~i~~~ 167 (470)
+.|++||.|..|++|+.+...
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~t 252 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGAT 252 (282)
T ss_dssp ECSCTTCEECTTCEEEECCCT
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 356666777777766666543
No 141
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=35.98 E-value=16 Score=35.76 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=15.8
Q ss_pred EeecCCCeeCCCCeEEEEEeCC
Q 012142 147 LIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 147 i~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+.|++|+.|..|++|+.+...+
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~TG 260 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGSTG 260 (291)
T ss_dssp ECCCTTCEECTTCEEEECCCCS
T ss_pred cccCCcCEECCCCEEEEECCCC
Confidence 4677888888888888775443
No 142
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=35.96 E-value=16 Score=34.91 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=16.3
Q ss_pred EEEEEEEcCCCCeecCCCcEEEEEe
Q 012142 105 GTLAKFLKQPGDRVEMDEPIAQIET 129 (470)
Q Consensus 105 g~i~~w~v~~Gd~V~~gd~l~evEt 129 (470)
+-+.++.|++||.|++||.|+.+-.
T Consensus 130 ~HL~~i~Vk~Gd~V~~Gq~IG~vG~ 154 (245)
T 3tuf_B 130 QSLSEVSVEQGDKVKQNQVIGKSGK 154 (245)
T ss_dssp EEESEESCCTTCEECTTCEEEECBC
T ss_pred ecCCccccCCCCEECCCCEEEEeCC
Confidence 4444566777777777777776654
No 143
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=32.87 E-value=9 Score=44.88 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=18.9
Q ss_pred EEcCCCCeecCCCcEEEE--EeCce
Q 012142 110 FLKQPGDRVEMDEPIAQI--ETDKV 132 (470)
Q Consensus 110 w~v~~Gd~V~~gd~l~ev--EtdK~ 132 (470)
+.|++||+|+.||+|+.+ |+.|.
T Consensus 1107 ~~v~~g~~v~~g~vlakip~~~~k~ 1131 (1407)
T 3lu0_D 1107 VQLEDGVQISSGDTLARIPQESGGT 1131 (1407)
T ss_dssp CCCCSSCEECTTCEEECCCCCCCCS
T ss_pred EEecCCCEeccCceEEecchhhccc
Confidence 468999999999999977 55554
No 144
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=32.72 E-value=3.4e+02 Score=26.06 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEecC---------C------ceEEeeEcCCCCCCHHHH
Q 012142 296 KLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTK---------K------GLVVPVIRNSERMNFAEI 360 (470)
Q Consensus 296 kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t~---------~------GL~vPvI~~a~~~sl~eI 360 (470)
++|++.++.-|.+.+|.++- ..++ +++-||+.++.- . |.++-++.--...++.|+
T Consensus 234 ~~t~~~~l~aa~~~~l~r~~-----~~~~-----~~v~~g~~~~~R~~~~~~~~~~~~~~~vG~f~n~lp~~~~~~~~~~ 303 (422)
T 1q9j_A 234 RLSLNAVVAAAILLTEWQLR-----NTPH-----VPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDL 303 (422)
T ss_dssp TCCHHHHHHHHHHHHHHHHH-----TCSS-----CCEEEEEEEETTTTSSSCCCTTTBSCCEEEEEEEECCCSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcc-----cCCC-----ceEEEeeeeecccccCCCCChhhhhhhheeeeeeeeccCCCCHHHH
Confidence 67999999999999999761 0111 234455555421 1 333333332335689999
Q ss_pred HHHHHHHHHHHhc
Q 012142 361 EKEISTLAKKAND 373 (470)
Q Consensus 361 a~~l~~l~~~ar~ 373 (470)
.+++++-...+.+
T Consensus 304 l~~v~~~~~~~~~ 316 (422)
T 1q9j_A 304 ASDIVATLRADLA 316 (422)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888777665543
No 145
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=32.32 E-value=71 Score=34.32 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=41.4
Q ss_pred EcCCCCeecCCCcEEEEEeCc-eeeEE--ecCCCeEEEEEeecCCCeeCCCCeEEEEEeCC
Q 012142 111 LKQPGDRVEMDEPIAQIETDK-VTIDV--ASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~evEtdK-~~~~i--~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~~ 168 (470)
.+++||.|..||.+++|.-.. .+..| +....|+|+++ .+| ...+-++++.++..+
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g-~~~v~~~v~~i~~~~ 187 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESG-SFTIDDPICVIETEQ 187 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCE-EECTTSCCEEEEETT
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCC-cceeceeEEEEeccC
Confidence 389999999999999986443 44665 34468999987 555 567888888887543
No 146
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=31.19 E-value=21 Score=34.13 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=8.5
Q ss_pred EcCCCCeecCCCcEEEE
Q 012142 111 LKQPGDRVEMDEPIAQI 127 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~ev 127 (470)
.|++||.|++||+|+.+
T Consensus 183 ~V~~G~~V~~Gq~IG~v 199 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYM 199 (252)
T ss_dssp SCCTTCEECTTCEEEEC
T ss_pred cCCCCCEECCCCEEEEE
Confidence 44555555555555544
No 147
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=31.16 E-value=20 Score=35.01 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=14.9
Q ss_pred EEEEcCCCCeecCC------CcEEEEE
Q 012142 108 AKFLKQPGDRVEMD------EPIAQIE 128 (470)
Q Consensus 108 ~~w~v~~Gd~V~~g------d~l~evE 128 (470)
++|.+++|+.|..| |+|++|+
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~ 95 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKIT 95 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEE
Confidence 45777777777777 6666665
No 148
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=30.61 E-value=4.3e+02 Score=26.52 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=81.5
Q ss_pred ccchHHHHHHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEecC------C--ce---EEee-EcCCCCCCHHHHHHH
Q 012142 296 KLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTK------K--GL---VVPV-IRNSERMNFAEIEKE 363 (470)
Q Consensus 296 kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t~------~--GL---~vPv-I~~a~~~sl~eIa~~ 363 (470)
++|+..++.-|.+.+|.++-.- +++-||+.+..- + |. .+|+ ++-....++.|+.++
T Consensus 326 ~~T~~~~l~aa~a~~L~~~~~~------------~dv~~g~~~~gR~~~~~~~~vG~f~n~lplr~~~~~~~~~~~~l~~ 393 (520)
T 2jgp_A 326 GTTLYMVLLAAYNVLLAKYAGQ------------EDIIVGTPITGRSHADLEPIVGMFVNTLAMRNKPQREKTFSEFLQE 393 (520)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTC------------SCEEEEEEECCCCSGGGTTCCSCCCEEEEEEECCCTTSBHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCC------------CCeEEEeccCCCCchhhhccEEeeeeeeeEEecCCCCCCHHHHHHH
Confidence 5688999999999999876321 234455655421 1 32 4566 444456799999999
Q ss_pred HHHHHHHHhcCC-CCc---------------cccCCccEEEecCCC----CCCcceeeeeCCCC--eE--EEEecceeee
Q 012142 364 ISTLAKKANDGS-ISI---------------DEMAGGTFTISNGGV----YGSLLSTPIINPPQ--SA--ILGMHSIVNR 419 (470)
Q Consensus 364 l~~l~~~ar~g~-L~~---------------~d~~ggTftISNlG~----~G~~~~~pii~ppq--~a--IL~vG~i~~~ 419 (470)
+++....+.+.. +.. ..+-.-.|++.|... ++.....++..... .+ -|.+.
T Consensus 394 v~~~~~~~~~h~~~p~~~i~~~l~~~r~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~----- 468 (520)
T 2jgp_A 394 VKQNALDAYGHQDYPFEELVEKLAIARDLSRNPLFDTVFTFQNSTEEVMTLPECTLAPFMTDETGQHAKFDLTFS----- 468 (520)
T ss_dssp HHHHHHHHHHTCCSCHHHHHHHTCCCCCTTSCSSCSEEEEEECCCCSCCCCSSEEEEECSSCSSCSBCSSSEEEE-----
T ss_pred HHHHHHHHHHhccCCHHHHHHHhcCCCCCCCCCcEEEEEEEecCCCccccCCCceeEEeecCCCCcceeeeeEEE-----
Confidence 888766654432 111 122233455555432 11111122111100 00 01110
Q ss_pred EEEeCCeEEEEcEEEEEEEecccccChHHHHHHHHHHHHHh----cChhhh
Q 012142 420 PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIV----EDPRRL 466 (470)
Q Consensus 420 pv~~~g~i~~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~L----E~P~~l 466 (470)
....+|. +.+.|.||-.+++...+.+|+..+..+| ++|+.-
T Consensus 469 ~~~~~~~------l~~~~~y~~~~~~~~~i~~l~~~~~~lL~~l~~~p~~~ 513 (520)
T 2jgp_A 469 ATEEREE------MTIGVEYSTSLFTRETMERFSRHFLTIAASIVQNPHIR 513 (520)
T ss_dssp EEECSSC------EEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHCTTCB
T ss_pred EEECCCe------EEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCccCc
Confidence 0001333 5689999999999999888887776654 567654
No 149
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=29.89 E-value=19 Score=37.24 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=12.3
Q ss_pred EEEEcCCCCeecCCCcEEEEEeC
Q 012142 108 AKFLKQPGDRVEMDEPIAQIETD 130 (470)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evEtd 130 (470)
+.++++.||+|++||+|+.|=++
T Consensus 383 i~~~~k~g~~v~~g~~l~~i~~~ 405 (440)
T 2tpt_A 383 FTDMARLGDQVDGQRPLAVIHAK 405 (440)
T ss_dssp EESCCCTTCEEBTTBCSEEEEES
T ss_pred eeEeccCCCEECCCCeEEEEecC
Confidence 44555555555555555555443
No 150
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=29.46 E-value=33 Score=35.53 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=32.5
Q ss_pred EeCceeeEEecCCCeEEE-------------------------------EEeecCCCeeCCCCeEEEEEeCCC
Q 012142 128 ETDKVTIDVASPQAGVIQ-------------------------------NLIAKEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 128 EtdK~~~~i~sp~~G~i~-------------------------------ki~v~eG~~v~~G~~l~~i~~~~~ 169 (470)
...+...+|.|+.+|+|. .++.+.||.|..|++|+.|-...+
T Consensus 335 ~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 335 PTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp CCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCH
Confidence 345666777777777774 456788999999999999987654
No 151
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=28.13 E-value=7.6 Score=31.03 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.3
Q ss_pred EcCCCCeecCCCcEE
Q 012142 111 LKQPGDRVEMDEPIA 125 (470)
Q Consensus 111 ~v~~Gd~V~~gd~l~ 125 (470)
+|++||.|++||.|.
T Consensus 68 ~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 68 NVFEGERVERGDVIS 82 (84)
T ss_dssp SSCTTEEECBSCSSB
T ss_pred EeCCCCEECCCCCcc
Confidence 699999999999875
No 152
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=27.68 E-value=33 Score=31.31 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.0
Q ss_pred EEeecCCCeeCCCCeEEEEEe
Q 012142 146 NLIAKEGETVEPGAKIAVISK 166 (470)
Q Consensus 146 ki~v~eG~~v~~G~~l~~i~~ 166 (470)
+.+|++||.|..|++|+.++-
T Consensus 119 ~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 119 TRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp EECSCTTCEECTTCEEEEECH
T ss_pred eEEEeCcCEEcCCCEEEEECH
Confidence 457789999999999999964
No 153
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=27.14 E-value=78 Score=26.90 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=25.6
Q ss_pred cCCCeEEEEEee-cCCCeeCCCCeEEEEEeCCC
Q 012142 138 SPQAGVIQNLIA-KEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 138 sp~~G~i~ki~v-~eG~~v~~G~~l~~i~~~~~ 169 (470)
.+.-|.|..+.+ ++|+.|..|++|+.|+....
T Consensus 32 ~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~ 64 (128)
T 1onl_A 32 QDALGDVVYVELPEVGRVVEKGEAVAVVESVKT 64 (128)
T ss_dssp HHHHCSEEEEECBCTTCEECTTCEEEEEEESSB
T ss_pred hhcCCCceEEEecCCCCEEeCCCEEEEEEEcce
Confidence 455577777766 99999999999999986543
No 154
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=26.78 E-value=28 Score=34.81 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=16.9
Q ss_pred EeecCCCeeCCCCeEEEEEeCC
Q 012142 147 LIAKEGETVEPGAKIAVISKSG 168 (470)
Q Consensus 147 i~v~eG~~v~~G~~l~~i~~~~ 168 (470)
+.|++|+.|..|++|+.+...+
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~tg 305 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGATG 305 (361)
T ss_dssp ECCCTTCEECTTCEEEECCCCS
T ss_pred cccCCcCEECCCCEEEEECCCC
Confidence 4688888888888888876543
No 155
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=26.22 E-value=3.4e+02 Score=31.41 Aligned_cols=153 Identities=15% Similarity=0.175 Sum_probs=80.3
Q ss_pred ccchHHHHHHHHHHHhhhCCccceEEeCCeEEEeCCccEEEEEec-C---C------ce---EEee-EcCCCCCCHHHHH
Q 012142 296 KLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGT-K---K------GL---VVPV-IRNSERMNFAEIE 361 (470)
Q Consensus 296 kls~~~~liKA~~~AL~~~P~lNa~~~~~~i~~~~~inIgiAv~t-~---~------GL---~vPv-I~~a~~~sl~eIa 361 (470)
++|++.++.-|.+..|.++- +. +++-||+.++. + . |+ .+|+ ++-....++.|+.
T Consensus 251 ~~T~~~vllaa~a~~L~r~t-------g~-----~dvv~G~pvsgR~~~~~~~~~~vG~fvntlplr~~~~~~~s~~~ll 318 (1304)
T 2vsq_A 251 HTTLSTALQAVWSVLISRYQ-------QS-----GDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLL 318 (1304)
T ss_dssp TCCHHHHHHHHHHHHHHHHH-------TC-----SEEEEEEEECCCCTTSTTGGGCCSSCCEEEEEEEECCTTCBHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc-------CC-----CCEEEEEEeCCCCccchhhhcccccceeEEEEEecCCCCCcHHHHH
Confidence 56889999999999998862 21 12446666652 1 1 33 3555 4444567999999
Q ss_pred HHHHHHHHHHhcCCCC-c---------cccCCccEEEecCCCCCCcceeeeeCCCCeEEEEecceee--e-EEEeCCeEE
Q 012142 362 KEISTLAKKANDGSIS-I---------DEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVN--R-PMVVGGNVV 428 (470)
Q Consensus 362 ~~l~~l~~~ar~g~L~-~---------~d~~ggTftISNlG~~G~~~~~pii~ppq~aIL~vG~i~~--~-pv~~~g~i~ 428 (470)
+++++....+.+..-- . ..+..-.|.+.|...-+..............-+.+....+ - ..+.+|
T Consensus 319 ~~v~~~~~~a~~hq~~p~~~i~~~l~~~~lf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dL~l~~~~~--- 395 (1304)
T 2vsq_A 319 KRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPG--- 395 (1304)
T ss_dssp HHHHHHHHHHGGGTTSCHHHHHHSSSCSSSCCCEEEECSSCHHHHSCCCHHHHSEEEEEEEECCCCCSSEEEEEECS---
T ss_pred HHHHHHHHHhhhcccCCHHHHHHHhCCCcccceeEEEeecccccccccccccCCceeEeeecccccccCeEEEEecC---
Confidence 9998877776654321 1 1222233444443211100000000000000000000000 0 001111
Q ss_pred EEcEEEEEEEecccccChHHHHHHHHHHHHHh----cChhh
Q 012142 429 PRPMMYIALTYDHRLIDGREAVFFLRRIKDIV----EDPRR 465 (470)
Q Consensus 429 ~~~~m~ltls~DHRviDGa~aa~Fl~~lk~~L----E~P~~ 465 (470)
.-+.+.|.||..++|-..+.+++.++..+| ++|+.
T Consensus 396 --~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~ 434 (1304)
T 2vsq_A 396 --DEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQ 434 (1304)
T ss_dssp --SSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred --CcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCccc
Confidence 125689999999999999998888777665 45654
No 156
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=26.01 E-value=77 Score=26.92 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=25.9
Q ss_pred cCCCeEEEEEee-cCCCeeCCCCeEEEEEeCCC
Q 012142 138 SPQAGVIQNLIA-KEGETVEPGAKIAVISKSGE 169 (470)
Q Consensus 138 sp~~G~i~ki~v-~eG~~v~~G~~l~~i~~~~~ 169 (470)
.+.-|.|..+.+ ++|+.|..|++|+.|+....
T Consensus 33 ~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~ 65 (128)
T 3a7l_A 33 QELLGDMVFVDLPEVGATVSAGDDCAVAESVKA 65 (128)
T ss_dssp HHHHCSEEEEECCCTTCEECTTCEEEEEEESSC
T ss_pred hccCCceEEEEecCCCCEEeCCCEEEEEEecce
Confidence 455677777776 89999999999999986553
No 157
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=25.26 E-value=89 Score=32.23 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=16.7
Q ss_pred eCceeeEEecCCCeEEEEEee
Q 012142 129 TDKVTIDVASPQAGVIQNLIA 149 (470)
Q Consensus 129 tdK~~~~i~sp~~G~i~ki~v 149 (470)
..+...+|.|+.+|+|.+|..
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~ 354 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVS 354 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECH
T ss_pred CCCeEEEEecCCCEEEEEech
Confidence 356778888999999988865
No 158
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=24.93 E-value=19 Score=35.66 Aligned_cols=21 Identities=5% Similarity=0.145 Sum_probs=17.1
Q ss_pred EEEcCCCCeecCCCcEEEEEe
Q 012142 109 KFLKQPGDRVEMDEPIAQIET 129 (470)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evEt 129 (470)
++.|++||+|++||+|+.+-+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 457899999999999998753
No 159
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=24.68 E-value=1.1e+02 Score=28.94 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=30.5
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCc---eeeEEecCCCeEEEEEeecCCCeeCCCCeEE
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---VTIDVASPQAGVIQNLIAKEGETVEPGAKIA 162 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK---~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~ 162 (470)
..|+|.++..+ ++|.-...|++.. ...+.-.+-. +++|.+||.|+.|++|-
T Consensus 175 ~~G~I~~I~~~-----ekgg~~vtI~~~~~G~~v~~~iP~Gp----eLiV~~G~~v~~~qpLT 228 (252)
T 1hcz_A 175 AGGIISKILRK-----EKGGYEITIVDASNERQVIDIIPRGL----ELLVSEGESIKLDQPLT 228 (252)
T ss_dssp SCEEEEEEEEC-----TTSCEEEEEEETTTTEEEEEEECTTC----CBCCCTTCEECTTCBSB
T ss_pred CCcEEEEEEEc-----CCCCEEEEEecCCCCCEEEEecCCCC----eEEEecCCEEecCCccc
Confidence 45788887664 3466666666544 2222222111 45788888888888874
No 160
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=22.46 E-value=77 Score=30.98 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=28.9
Q ss_pred eeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 133 ~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
..-+.|+..|.+. ..++.|+.|+.|++|+.+.+.
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp 290 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPM 290 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTCEECTTCEEEEEECT
T ss_pred ceEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECC
Confidence 3457899999886 778899999999999999764
No 161
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=21.31 E-value=1.5e+02 Score=27.96 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=37.5
Q ss_pred ceEEEEEEEcCCCCeecCCCcEEEEEeCceeeEEecCCCeEEEEEeecCCCeeCCCCeEEEEEeC
Q 012142 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (470)
Q Consensus 103 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK~~~~i~sp~~G~i~ki~v~eG~~v~~G~~l~~i~~~ 167 (470)
..|+|+.+.-..| .-..+.|+.......+- +-+.++.|++|+.|..|++|+.+...
T Consensus 100 ~~G~V~~~g~~~~-----~G~~ViI~Hg~G~~t~Y----~HL~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 100 LSGTVVKAEKDPV-----LGYVVEVEHADGLSTVY----QSLSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp SCEEEEEEEEETT-----TEEEEEEECSTTEEEEE----EEESEESCCTTCEECTTCEEEECBCC
T ss_pred cCeEEEEEEecCC-----CceEEEEEeCCCEEEEE----ecCCccccCCCCEECCCCEEEEeCCc
Confidence 5688887654332 22345566554444433 33557889999999999999999765
Done!