Query 012143
Match_columns 470
No_of_seqs 856 out of 2010
Neff 11.7
Searched_HMMs 46136
Date Thu Mar 28 23:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 2E-47 4.3E-52 335.1 29.1 364 11-466 122-487 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 9E-45 2E-49 318.5 25.2 349 28-467 104-454 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 8E-38 1.7E-42 303.1 42.3 387 10-467 132-574 (615)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-35 7E-40 302.4 44.0 412 12-462 472-898 (899)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-34 4.4E-39 296.5 43.2 434 11-467 335-802 (899)
6 PRK11447 cellulose synthase su 100.0 3.2E-34 7E-39 295.3 43.8 447 11-467 118-703 (1157)
7 PRK11447 cellulose synthase su 100.0 1.2E-33 2.6E-38 291.1 39.0 377 12-463 276-739 (1157)
8 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-32 2.6E-37 267.0 38.4 345 10-436 165-577 (615)
9 PRK15174 Vi polysaccharide exp 100.0 2.3E-32 5E-37 263.9 36.8 347 14-465 51-404 (656)
10 KOG0547 Translocase of outer m 100.0 5.8E-32 1.3E-36 231.8 30.6 361 9-467 119-569 (606)
11 KOG2002 TPR-containing nuclear 100.0 1.7E-31 3.6E-36 247.0 30.5 447 12-466 171-711 (1018)
12 PRK15174 Vi polysaccharide exp 100.0 2.4E-30 5.3E-35 249.9 35.7 324 11-437 82-410 (656)
13 PRK10049 pgaA outer membrane p 100.0 4.1E-29 8.9E-34 246.6 35.8 406 14-468 24-460 (765)
14 KOG2002 TPR-containing nuclear 100.0 3.7E-28 8E-33 225.0 35.8 395 22-467 147-562 (1018)
15 PRK09782 bacteriophage N4 rece 100.0 7.6E-28 1.6E-32 237.5 39.2 444 11-468 50-710 (987)
16 KOG1126 DNA-binding cell divis 100.0 2E-29 4.2E-34 225.0 23.5 295 51-468 329-624 (638)
17 KOG1155 Anaphase-promoting com 100.0 1.9E-26 4.1E-31 197.0 31.5 254 143-463 273-535 (559)
18 KOG1126 DNA-binding cell divis 100.0 7.1E-28 1.5E-32 215.2 22.9 271 8-324 356-626 (638)
19 PRK11788 tetratricopeptide rep 100.0 2.4E-26 5.1E-31 212.6 33.2 311 39-465 34-348 (389)
20 PRK10049 pgaA outer membrane p 100.0 2E-26 4.4E-31 227.5 34.1 381 37-468 12-426 (765)
21 PRK09782 bacteriophage N4 rece 100.0 1.2E-24 2.6E-29 215.1 38.1 395 31-467 334-743 (987)
22 KOG0624 dsRNA-activated protei 100.0 9.7E-26 2.1E-30 185.5 24.3 217 11-237 44-260 (504)
23 KOG1173 Anaphase-promoting com 99.9 2.3E-24 5.1E-29 188.9 32.9 429 19-468 30-522 (611)
24 PRK14574 hmsH outer membrane p 99.9 2.8E-23 6.2E-28 201.3 41.7 407 32-468 26-517 (822)
25 PRK11788 tetratricopeptide rep 99.9 1.4E-24 3E-29 200.8 28.9 276 4-326 34-319 (389)
26 KOG1155 Anaphase-promoting com 99.9 2.9E-23 6.4E-28 177.6 34.2 318 72-465 161-496 (559)
27 KOG2076 RNA polymerase III tra 99.9 1.5E-23 3.3E-28 193.4 32.8 343 42-462 141-510 (895)
28 KOG0547 Translocase of outer m 99.9 3.5E-24 7.7E-29 184.4 24.4 348 42-469 117-537 (606)
29 KOG0495 HAT repeat protein [RN 99.9 6E-22 1.3E-26 176.5 38.2 432 17-466 388-882 (913)
30 KOG0548 Molecular co-chaperone 99.9 1.4E-22 3.1E-27 177.0 30.8 410 8-467 5-458 (539)
31 KOG4162 Predicted calmodulin-b 99.9 5.9E-22 1.3E-26 180.1 32.2 420 14-470 332-789 (799)
32 PF13429 TPR_15: Tetratricopep 99.9 5.3E-24 1.2E-28 186.4 15.5 255 142-465 18-278 (280)
33 KOG1173 Anaphase-promoting com 99.9 1.7E-22 3.8E-27 177.3 24.3 280 5-330 244-530 (611)
34 PF13429 TPR_15: Tetratricopep 99.9 2.8E-24 6E-29 188.2 12.2 259 12-318 15-277 (280)
35 KOG2003 TPR repeat-containing 99.9 9.9E-22 2.1E-26 168.2 26.6 404 11-450 243-709 (840)
36 PRK12370 invasion protein regu 99.9 1.7E-21 3.6E-26 185.8 30.5 250 144-463 273-534 (553)
37 KOG1125 TPR repeat-containing 99.9 1.6E-22 3.6E-27 178.2 21.2 263 8-309 288-562 (579)
38 TIGR00540 hemY_coli hemY prote 99.9 6.1E-21 1.3E-25 175.5 31.0 298 44-465 88-400 (409)
39 PRK14574 hmsH outer membrane p 99.9 3.2E-20 6.9E-25 180.3 36.2 400 6-438 35-521 (822)
40 KOG2076 RNA polymerase III tra 99.9 4E-20 8.7E-25 171.1 33.4 385 8-462 142-553 (895)
41 PRK11189 lipoprotein NlpI; Pro 99.9 2.7E-21 5.9E-26 169.3 24.3 237 143-450 37-286 (296)
42 PRK12370 invasion protein regu 99.9 1E-20 2.2E-25 180.5 29.5 204 55-327 275-479 (553)
43 KOG0495 HAT repeat protein [RN 99.9 9.1E-20 2E-24 162.8 32.9 366 15-443 526-893 (913)
44 PRK11189 lipoprotein NlpI; Pro 99.9 2.4E-20 5.2E-25 163.3 29.1 221 179-468 39-269 (296)
45 KOG1127 TPR repeat-containing 99.9 3E-20 6.4E-25 173.1 29.3 402 21-465 474-914 (1238)
46 KOG0548 Molecular co-chaperone 99.9 3.8E-20 8.1E-25 162.1 27.3 286 142-467 12-424 (539)
47 KOG1125 TPR repeat-containing 99.9 1.2E-21 2.7E-26 172.7 17.9 235 141-467 294-530 (579)
48 PLN03081 pentatricopeptide (PP 99.9 4.1E-20 8.8E-25 182.5 30.9 380 40-465 158-558 (697)
49 KOG2003 TPR repeat-containing 99.9 5.2E-20 1.1E-24 157.8 26.8 334 11-400 282-691 (840)
50 PRK10747 putative protoheme IX 99.9 1.8E-19 3.8E-24 164.9 30.9 257 144-466 130-392 (398)
51 PLN03077 Protein ECB2; Provisi 99.9 3.9E-18 8.4E-23 172.7 40.9 382 40-465 323-721 (857)
52 TIGR02521 type_IV_pilW type IV 99.9 1.8E-19 3.9E-24 154.5 26.7 203 165-466 30-234 (234)
53 PLN03218 maturation of RBCL 1; 99.9 2.1E-17 4.5E-22 165.3 44.2 390 14-466 379-785 (1060)
54 KOG0624 dsRNA-activated protei 99.9 1.3E-19 2.9E-24 149.7 22.9 265 149-468 89-374 (504)
55 KOG1174 Anaphase-promoting com 99.9 5.1E-19 1.1E-23 149.8 26.6 328 31-449 186-519 (564)
56 COG3063 PilF Tfp pilus assembl 99.9 4E-19 8.7E-24 139.2 24.0 139 166-325 35-175 (250)
57 COG3063 PilF Tfp pilus assembl 99.9 1.3E-19 2.8E-24 142.0 21.2 204 42-324 37-242 (250)
58 KOG1129 TPR repeat-containing 99.9 1E-19 2.2E-24 149.4 20.8 225 146-467 237-461 (478)
59 TIGR00540 hemY_coli hemY prote 99.9 8.6E-19 1.9E-23 161.3 29.2 270 9-322 88-370 (409)
60 TIGR02521 type_IV_pilW type IV 99.9 3.1E-19 6.8E-24 153.1 24.4 202 75-320 31-234 (234)
61 KOG0550 Molecular chaperone (D 99.9 2.8E-20 6E-25 157.4 16.7 275 142-467 59-353 (486)
62 KOG1156 N-terminal acetyltrans 99.9 4.9E-18 1.1E-22 151.9 30.9 377 43-465 10-435 (700)
63 PLN02789 farnesyltranstransfer 99.9 1.3E-18 2.9E-23 151.4 26.6 163 146-329 51-223 (320)
64 KOG0550 Molecular chaperone (D 99.8 4.4E-19 9.6E-24 150.2 21.9 281 9-321 53-353 (486)
65 KOG1174 Anaphase-promoting com 99.8 3E-19 6.6E-24 151.1 20.4 271 12-329 239-511 (564)
66 PLN03218 maturation of RBCL 1; 99.8 1.2E-16 2.6E-21 159.9 42.2 356 15-431 416-784 (1060)
67 KOG1156 N-terminal acetyltrans 99.8 7.9E-17 1.7E-21 144.3 35.5 403 12-460 14-464 (700)
68 KOG1129 TPR repeat-containing 99.8 7.7E-20 1.7E-24 150.1 14.1 240 45-330 228-470 (478)
69 PLN02789 farnesyltranstransfer 99.8 6.6E-19 1.4E-23 153.3 20.9 214 51-302 47-268 (320)
70 PRK10747 putative protoheme IX 99.8 9.7E-18 2.1E-22 153.5 29.4 265 9-322 88-361 (398)
71 KOG1127 TPR repeat-containing 99.8 1.3E-18 2.8E-23 162.4 23.0 365 54-468 471-883 (1238)
72 KOG1915 Cell cycle control pro 99.8 4.2E-16 9E-21 134.7 36.2 421 17-463 50-499 (677)
73 COG2956 Predicted N-acetylgluc 99.8 5.1E-17 1.1E-21 133.6 28.3 278 43-435 38-316 (389)
74 cd05804 StaR_like StaR_like; a 99.8 1.1E-16 2.3E-21 146.2 33.3 208 71-320 2-217 (355)
75 PLN03081 pentatricopeptide (PP 99.8 8.8E-17 1.9E-21 159.0 34.2 385 14-467 96-526 (697)
76 KOG4162 Predicted calmodulin-b 99.8 1E-17 2.2E-22 152.9 24.2 281 21-324 460-789 (799)
77 PLN03077 Protein ECB2; Provisi 99.8 4.3E-16 9.3E-21 157.9 37.0 382 43-461 225-651 (857)
78 KOG1840 Kinesin light chain [C 99.8 2.8E-17 6.1E-22 149.3 24.4 244 161-463 194-478 (508)
79 COG2956 Predicted N-acetylgluc 99.8 3.2E-16 7E-21 128.9 25.6 237 172-466 41-280 (389)
80 KOG1840 Kinesin light chain [C 99.8 4.5E-17 9.7E-22 148.0 21.4 245 36-317 195-478 (508)
81 KOG1915 Cell cycle control pro 99.8 8.6E-14 1.9E-18 120.6 37.0 421 18-468 86-589 (677)
82 cd05804 StaR_like StaR_like; a 99.7 3.3E-15 7.3E-20 136.4 29.2 209 36-286 2-217 (355)
83 PRK15359 type III secretion sy 99.7 9.5E-17 2.1E-21 124.0 15.4 127 152-302 13-139 (144)
84 TIGR03302 OM_YfiO outer membra 99.7 5.7E-16 1.2E-20 132.3 21.5 193 71-321 29-235 (235)
85 TIGR03302 OM_YfiO outer membra 99.7 1.3E-15 2.9E-20 130.0 22.5 196 163-466 30-234 (235)
86 KOG2376 Signal recognition par 99.7 5E-14 1.1E-18 125.3 32.1 195 11-237 18-261 (652)
87 PF12569 NARP1: NMDA receptor- 99.7 1.3E-13 2.9E-18 127.2 35.5 423 12-461 11-517 (517)
88 PRK15359 type III secretion sy 99.7 5.1E-16 1.1E-20 120.0 15.0 122 186-331 13-134 (144)
89 KOG3785 Uncharacterized conser 99.7 2.3E-13 5.1E-18 113.7 29.7 277 15-330 32-323 (557)
90 PRK10370 formate-dependent nit 99.7 2E-15 4.4E-20 123.0 17.6 153 142-325 26-180 (198)
91 PRK10370 formate-dependent nit 99.7 5.8E-15 1.2E-19 120.4 19.1 127 144-291 51-180 (198)
92 PRK14720 transcript cleavage f 99.7 1.5E-14 3.2E-19 139.5 24.8 154 33-228 24-177 (906)
93 KOG3785 Uncharacterized conser 99.7 2.2E-14 4.9E-19 119.7 21.9 316 142-460 32-418 (557)
94 KOG1130 Predicted G-alpha GTPa 99.6 2.6E-15 5.6E-20 127.7 12.7 281 10-319 22-345 (639)
95 KOG2376 Signal recognition par 99.6 3.5E-12 7.5E-17 113.9 32.7 362 51-466 22-448 (652)
96 PRK15179 Vi polysaccharide bio 99.6 6.2E-14 1.3E-18 134.4 23.4 156 149-325 69-224 (694)
97 KOG3060 Uncharacterized conser 99.6 2.2E-13 4.7E-18 108.7 22.1 169 143-332 63-234 (289)
98 COG3071 HemY Uncharacterized e 99.6 1E-11 2.2E-16 106.0 31.7 259 144-469 130-395 (400)
99 COG5010 TadD Flp pilus assembl 99.6 2.9E-13 6.3E-18 109.2 20.2 145 149-314 83-227 (257)
100 KOG2047 mRNA splicing factor [ 99.6 1.8E-11 3.8E-16 110.4 32.9 417 17-467 37-582 (835)
101 KOG3060 Uncharacterized conser 99.6 1.6E-12 3.5E-17 103.8 23.5 161 146-327 26-192 (289)
102 COG5010 TadD Flp pilus assembl 99.6 4.7E-13 1E-17 108.0 20.1 158 147-326 48-205 (257)
103 KOG1130 Predicted G-alpha GTPa 99.6 4.7E-14 1E-18 120.1 14.9 117 80-215 22-150 (639)
104 KOG4340 Uncharacterized conser 99.6 4.1E-11 8.8E-16 98.2 31.1 378 15-468 20-447 (459)
105 PRK04841 transcriptional regul 99.6 9.7E-12 2.1E-16 128.0 34.5 347 46-467 380-763 (903)
106 TIGR02552 LcrH_SycD type III s 99.6 7.7E-14 1.7E-18 107.9 14.4 117 187-324 4-120 (135)
107 TIGR02552 LcrH_SycD type III s 99.6 9.9E-14 2.1E-18 107.3 14.9 119 153-292 4-122 (135)
108 PF12569 NARP1: NMDA receptor- 99.6 5.6E-12 1.2E-16 116.7 27.7 245 41-323 5-262 (517)
109 KOG0553 TPR repeat-containing 99.5 3.5E-14 7.6E-19 116.6 9.8 104 142-245 91-194 (304)
110 PRK15179 Vi polysaccharide bio 99.5 1.3E-12 2.9E-17 125.4 21.3 146 68-236 79-224 (694)
111 KOG0553 TPR repeat-containing 99.5 4E-13 8.6E-18 110.5 13.5 120 166-306 81-200 (304)
112 COG3071 HemY Uncharacterized e 99.5 1.3E-10 2.7E-15 99.4 28.7 272 168-468 86-361 (400)
113 KOG1128 Uncharacterized conser 99.5 4.5E-12 9.9E-17 116.0 20.8 219 41-320 399-618 (777)
114 PRK14720 transcript cleavage f 99.5 4.1E-12 8.9E-17 122.9 21.6 212 160-468 25-256 (906)
115 KOG1128 Uncharacterized conser 99.5 4.4E-12 9.6E-17 116.0 18.9 193 72-323 395-587 (777)
116 PRK15363 pathogenicity island 99.5 2.9E-12 6.2E-17 96.6 14.7 105 160-285 28-133 (157)
117 PRK15363 pathogenicity island 99.5 1.8E-12 4E-17 97.7 13.3 109 192-321 26-135 (157)
118 COG4783 Putative Zn-dependent 99.4 1.6E-10 3.5E-15 101.5 23.6 154 196-431 302-455 (484)
119 PF04733 Coatomer_E: Coatomer 99.4 2.6E-11 5.6E-16 104.8 16.6 251 143-467 12-268 (290)
120 KOG4340 Uncharacterized conser 99.4 2.6E-10 5.7E-15 93.6 21.1 176 143-318 21-207 (459)
121 PLN03088 SGT1, suppressor of 99.4 1.9E-11 4.2E-16 109.7 15.9 112 170-302 6-117 (356)
122 KOG2047 mRNA splicing factor [ 99.4 2.5E-08 5.4E-13 90.7 34.4 437 13-467 177-690 (835)
123 PRK04841 transcriptional regul 99.4 2.2E-09 4.7E-14 110.8 32.4 318 40-434 409-764 (903)
124 PLN03088 SGT1, suppressor of 99.4 9.6E-12 2.1E-16 111.6 12.4 104 142-245 12-115 (356)
125 PF04733 Coatomer_E: Coatomer 99.3 1.7E-11 3.7E-16 105.9 13.2 261 11-324 7-271 (290)
126 COG4235 Cytochrome c biogenesi 99.3 8.4E-11 1.8E-15 97.8 15.7 126 182-325 138-263 (287)
127 PRK10866 outer membrane biogen 99.3 5.8E-10 1.3E-14 94.1 21.0 166 143-315 43-238 (243)
128 COG4783 Putative Zn-dependent 99.3 1.8E-10 3.8E-15 101.3 18.3 139 163-322 303-441 (484)
129 PF13525 YfiO: Outer membrane 99.3 6.3E-10 1.4E-14 91.8 19.4 174 75-309 5-198 (203)
130 CHL00033 ycf3 photosystem I as 99.3 2.6E-10 5.7E-15 91.4 16.4 130 144-287 11-152 (168)
131 PF13414 TPR_11: TPR repeat; P 99.3 2E-11 4.4E-16 81.5 7.5 67 165-231 2-69 (69)
132 KOG1941 Acetylcholine receptor 99.3 2.7E-09 5.8E-14 90.1 21.4 313 77-464 8-360 (518)
133 PF13525 YfiO: Outer membrane 99.3 1.8E-09 4E-14 89.0 20.5 186 165-455 4-198 (203)
134 COG4235 Cytochrome c biogenesi 99.3 3E-10 6.6E-15 94.5 15.6 124 146-290 136-262 (287)
135 TIGR02795 tol_pal_ybgF tol-pal 99.3 2.4E-10 5.1E-15 86.2 13.8 107 166-293 2-114 (119)
136 PRK10866 outer membrane biogen 99.3 6.3E-09 1.4E-13 87.8 23.2 198 165-460 31-237 (243)
137 PRK02603 photosystem I assembl 99.2 4.4E-10 9.5E-15 90.4 14.5 84 162-245 31-117 (172)
138 TIGR02795 tol_pal_ybgF tol-pal 99.2 4.4E-10 9.5E-15 84.8 13.7 105 200-325 2-112 (119)
139 PF13414 TPR_11: TPR repeat; P 99.2 6.5E-11 1.4E-15 79.1 7.6 66 401-466 3-69 (69)
140 PF12895 Apc3: Anaphase-promot 99.2 4.9E-11 1.1E-15 83.0 7.2 81 145-226 2-84 (84)
141 PF09976 TPR_21: Tetratricopep 99.2 9.7E-10 2.1E-14 85.5 15.1 117 144-282 23-145 (145)
142 PF13432 TPR_16: Tetratricopep 99.2 1.1E-10 2.5E-15 76.7 7.9 65 170-234 1-65 (65)
143 PRK10153 DNA-binding transcrip 99.2 2.1E-09 4.6E-14 100.5 18.4 142 162-325 333-489 (517)
144 PF09976 TPR_21: Tetratricopep 99.2 2.7E-09 5.9E-14 83.0 16.3 118 177-316 22-145 (145)
145 cd00189 TPR Tetratricopeptide 99.2 5.5E-10 1.2E-14 80.7 11.7 97 203-320 3-99 (100)
146 PRK11906 transcriptional regul 99.2 2.1E-09 4.6E-14 95.2 17.1 150 146-316 272-434 (458)
147 cd00189 TPR Tetratricopeptide 99.2 5.4E-10 1.2E-14 80.7 11.6 99 168-287 2-100 (100)
148 COG4785 NlpI Lipoprotein NlpI, 99.2 3.3E-09 7.1E-14 83.1 15.8 126 165-312 64-189 (297)
149 COG4785 NlpI Lipoprotein NlpI, 99.2 7.4E-09 1.6E-13 81.1 17.2 105 199-324 64-168 (297)
150 PF14938 SNAP: Soluble NSF att 99.1 2.1E-09 4.5E-14 93.8 15.9 160 147-320 89-268 (282)
151 PF14938 SNAP: Soluble NSF att 99.1 1.4E-08 3.1E-13 88.6 20.0 184 81-331 41-238 (282)
152 CHL00033 ycf3 photosystem I as 99.1 2.1E-09 4.6E-14 86.1 13.7 123 180-323 13-154 (168)
153 PF13432 TPR_16: Tetratricopep 99.1 3.7E-10 8.1E-15 74.3 7.7 63 406-468 2-64 (65)
154 PRK02603 photosystem I assembl 99.1 1.6E-09 3.4E-14 87.2 12.7 105 197-322 32-153 (172)
155 PRK11906 transcriptional regul 99.1 5.7E-09 1.2E-13 92.6 16.7 180 34-284 242-436 (458)
156 KOG0543 FKBP-type peptidyl-pro 99.1 5.1E-09 1.1E-13 90.5 15.8 128 76-245 209-336 (397)
157 KOG1070 rRNA processing protei 99.1 2.5E-08 5.4E-13 98.2 21.8 222 58-320 1441-1665(1710)
158 PRK10803 tol-pal system protei 99.1 4.1E-09 9E-14 89.5 14.4 96 143-238 154-255 (263)
159 PRK10153 DNA-binding transcrip 99.1 8.4E-09 1.8E-13 96.6 17.5 126 144-291 354-489 (517)
160 KOG0543 FKBP-type peptidyl-pro 99.1 5.8E-09 1.2E-13 90.2 14.8 134 167-321 209-358 (397)
161 PF12895 Apc3: Anaphase-promot 99.1 5.3E-10 1.2E-14 77.8 7.1 82 178-281 1-84 (84)
162 PRK15331 chaperone protein Sic 99.1 6.4E-09 1.4E-13 79.0 13.2 107 159-287 30-136 (165)
163 PF12688 TPR_5: Tetratrico pep 99.0 1.2E-08 2.6E-13 74.8 13.2 97 166-283 1-103 (120)
164 COG0457 NrfG FOG: TPR repeat [ 99.0 6.1E-07 1.3E-11 77.4 26.6 222 146-433 37-268 (291)
165 PRK15331 chaperone protein Sic 99.0 4.5E-09 9.7E-14 79.8 10.9 108 192-321 29-136 (165)
166 KOG4648 Uncharacterized conser 99.0 4.4E-10 9.5E-15 94.1 5.6 179 142-321 107-299 (536)
167 KOG1941 Acetylcholine receptor 99.0 2.2E-07 4.7E-12 78.9 21.3 244 43-319 9-276 (518)
168 KOG3617 WD40 and TPR repeat-co 99.0 9.7E-07 2.1E-11 82.9 27.4 209 39-317 756-995 (1416)
169 PRK10803 tol-pal system protei 99.0 2.3E-08 5E-13 84.9 15.6 107 165-292 141-254 (263)
170 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 2.8E-08 6.1E-13 88.9 16.3 124 171-318 174-297 (395)
171 KOG1070 rRNA processing protei 99.0 1.4E-07 3E-12 93.2 21.8 221 18-285 1437-1664(1710)
172 COG4105 ComL DNA uptake lipopr 99.0 3.3E-07 7.2E-12 75.0 20.5 177 143-323 45-238 (254)
173 KOG4648 Uncharacterized conser 99.0 5.7E-10 1.2E-14 93.4 4.5 107 169-296 100-206 (536)
174 COG0457 NrfG FOG: TPR repeat [ 98.9 6.9E-07 1.5E-11 77.1 23.8 183 27-232 44-234 (291)
175 PF14559 TPR_19: Tetratricopep 98.9 2.4E-09 5.2E-14 71.2 6.0 63 145-207 4-66 (68)
176 PF14559 TPR_19: Tetratricopep 98.9 4E-09 8.6E-14 70.1 7.0 67 176-242 1-67 (68)
177 PF13371 TPR_9: Tetratricopept 98.9 9.6E-09 2.1E-13 69.4 8.2 68 173-240 2-69 (73)
178 KOG3617 WD40 and TPR repeat-co 98.9 4.3E-06 9.4E-11 78.8 27.4 313 13-395 778-1171(1416)
179 COG1729 Uncharacterized protei 98.9 6E-08 1.3E-12 80.1 13.4 98 142-239 151-254 (262)
180 KOG3081 Vesicle coat complex C 98.9 2.9E-06 6.3E-11 69.3 22.6 243 144-459 20-265 (299)
181 KOG2053 Mitochondrial inherita 98.9 8.8E-05 1.9E-09 71.0 36.5 228 51-322 19-259 (932)
182 PF12688 TPR_5: Tetratrico pep 98.9 9.6E-08 2.1E-12 70.1 13.1 97 200-317 1-103 (120)
183 KOG4234 TPR repeat-containing 98.9 2.2E-08 4.8E-13 77.5 9.8 101 142-242 105-210 (271)
184 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1E-07 2.2E-12 85.3 14.6 115 144-282 181-295 (395)
185 KOG2053 Mitochondrial inherita 98.8 8E-06 1.7E-10 77.8 27.2 236 142-434 19-259 (932)
186 KOG3081 Vesicle coat complex C 98.8 8.3E-07 1.8E-11 72.4 17.8 169 42-236 109-278 (299)
187 COG3898 Uncharacterized membra 98.8 6.6E-05 1.4E-09 65.0 31.5 294 81-463 90-391 (531)
188 PF13371 TPR_9: Tetratricopept 98.8 3.8E-08 8.2E-13 66.4 8.0 67 262-328 2-68 (73)
189 KOG4234 TPR repeat-containing 98.8 2.9E-08 6.3E-13 76.8 7.8 101 6-108 96-201 (271)
190 COG4700 Uncharacterized protei 98.8 2E-06 4.3E-11 66.1 17.3 147 148-317 72-221 (251)
191 COG4105 ComL DNA uptake lipopr 98.8 6.7E-06 1.5E-10 67.5 21.4 177 263-458 42-227 (254)
192 PF13512 TPR_18: Tetratricopep 98.7 4.5E-07 9.8E-12 67.5 12.6 93 144-236 22-135 (142)
193 PF13424 TPR_12: Tetratricopep 98.7 3.1E-08 6.8E-13 67.8 5.9 66 401-466 5-77 (78)
194 PF13512 TPR_18: Tetratricopep 98.7 5.1E-07 1.1E-11 67.2 12.3 103 367-469 8-133 (142)
195 COG1729 Uncharacterized protei 98.7 7.5E-07 1.6E-11 73.7 14.5 105 169-294 144-254 (262)
196 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 8.1E-08 1.8E-12 85.3 9.4 70 161-230 70-142 (453)
197 COG3898 Uncharacterized membra 98.7 3.1E-05 6.7E-10 66.9 24.0 258 15-318 130-392 (531)
198 KOG2471 TPR repeat-containing 98.7 2E-05 4.3E-10 70.1 23.4 148 51-212 216-381 (696)
199 PF13424 TPR_12: Tetratricopep 98.7 3.9E-08 8.5E-13 67.3 5.0 67 163-229 2-75 (78)
200 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.1E-07 2.4E-12 84.5 8.6 68 397-464 71-141 (453)
201 PF06552 TOM20_plant: Plant sp 98.6 3.1E-07 6.8E-12 70.6 9.4 94 148-241 7-121 (186)
202 PF06552 TOM20_plant: Plant sp 98.6 9.3E-07 2E-11 68.0 10.7 104 57-207 7-121 (186)
203 KOG1586 Protein required for f 98.6 3.2E-05 6.9E-10 62.0 18.9 149 166-331 74-237 (288)
204 COG4700 Uncharacterized protei 98.6 2.8E-05 6E-10 60.0 17.8 128 173-322 63-193 (251)
205 KOG1914 mRNA cleavage and poly 98.5 0.00073 1.6E-08 61.3 34.9 394 30-464 10-464 (656)
206 KOG4555 TPR repeat-containing 98.5 1.8E-06 3.8E-11 62.1 9.9 91 143-233 54-148 (175)
207 KOG2796 Uncharacterized conser 98.5 2.7E-05 5.9E-10 63.5 17.0 225 40-323 69-320 (366)
208 KOG4642 Chaperone-dependent E3 98.5 5E-07 1.1E-11 72.2 6.9 103 1-105 6-108 (284)
209 PF13431 TPR_17: Tetratricopep 98.4 2E-07 4.4E-12 51.2 2.9 34 423-456 1-34 (34)
210 PF04184 ST7: ST7 protein; In 98.4 2.3E-05 4.9E-10 70.3 16.8 227 51-322 178-418 (539)
211 KOG1586 Protein required for f 98.4 4.7E-05 1E-09 61.1 16.8 133 144-291 85-231 (288)
212 KOG2471 TPR repeat-containing 98.4 2.2E-05 4.8E-10 69.7 16.5 153 143-301 217-381 (696)
213 KOG4642 Chaperone-dependent E3 98.4 1.1E-06 2.3E-11 70.4 7.6 88 142-229 20-107 (284)
214 PF13428 TPR_14: Tetratricopep 98.4 8.3E-07 1.8E-11 52.5 5.0 41 167-207 2-42 (44)
215 KOG4555 TPR repeat-containing 98.4 1.5E-05 3.3E-10 57.4 11.6 63 169-231 46-108 (175)
216 PF13428 TPR_14: Tetratricopep 98.3 1.7E-06 3.6E-11 51.2 5.4 43 200-242 1-43 (44)
217 PF05843 Suf: Suppressor of fo 98.3 2.9E-05 6.2E-10 67.6 15.3 135 168-323 3-141 (280)
218 KOG1550 Extracellular protein 98.3 0.00067 1.4E-08 65.3 25.1 290 91-464 228-538 (552)
219 KOG2796 Uncharacterized conser 98.3 0.001 2.2E-08 54.8 21.9 216 165-434 68-319 (366)
220 KOG2610 Uncharacterized conser 98.3 0.00023 5E-09 60.5 18.5 153 143-316 114-274 (491)
221 PF13431 TPR_17: Tetratricopep 98.3 9.5E-07 2.1E-11 48.5 2.9 34 63-96 1-34 (34)
222 KOG3616 Selective LIM binding 98.2 0.0027 5.8E-08 60.0 25.9 295 79-434 710-1028(1636)
223 KOG3616 Selective LIM binding 98.2 0.002 4.4E-08 60.8 24.8 239 208-463 623-910 (1636)
224 KOG0376 Serine-threonine phosp 98.2 2.4E-06 5.2E-11 75.9 5.1 104 142-245 14-117 (476)
225 KOG0545 Aryl-hydrocarbon recep 98.2 0.00011 2.4E-09 59.4 13.6 126 75-239 178-303 (329)
226 KOG1585 Protein required for f 98.1 0.0014 3E-08 53.3 19.5 87 371-458 152-250 (308)
227 PF08631 SPO22: Meiosis protei 98.1 0.0038 8.3E-08 54.5 24.2 247 51-316 3-273 (278)
228 KOG1585 Protein required for f 98.1 0.00042 9E-09 56.2 16.2 194 45-279 36-251 (308)
229 KOG1550 Extracellular protein 98.1 0.0041 8.9E-08 60.0 25.6 149 147-319 227-394 (552)
230 PF04184 ST7: ST7 protein; In 98.1 0.00024 5.1E-09 64.0 15.8 159 144-325 180-382 (539)
231 PF05843 Suf: Suppressor of fo 98.1 0.00014 3E-09 63.4 14.1 127 144-291 13-143 (280)
232 KOG2300 Uncharacterized conser 98.0 0.009 1.9E-07 53.8 31.9 389 44-465 11-475 (629)
233 KOG2610 Uncharacterized conser 98.0 0.00036 7.7E-09 59.4 15.0 127 172-316 109-236 (491)
234 COG3118 Thioredoxin domain-con 98.0 0.00044 9.5E-09 58.1 15.2 177 22-225 119-297 (304)
235 PF00515 TPR_1: Tetratricopept 98.0 1.3E-05 2.8E-10 44.4 4.3 34 289-322 1-34 (34)
236 KOG0985 Vesicle coat protein c 98.0 0.02 4.4E-07 56.5 29.9 229 147-392 1090-1377(1666)
237 PF00515 TPR_1: Tetratricopept 98.0 1.5E-05 3.2E-10 44.1 4.2 31 202-232 3-33 (34)
238 KOG0545 Aryl-hydrocarbon recep 98.0 0.0001 2.2E-09 59.6 10.3 114 200-324 178-299 (329)
239 PF07719 TPR_2: Tetratricopept 98.0 2.4E-05 5.3E-10 43.2 4.9 31 202-232 3-33 (34)
240 PF07719 TPR_2: Tetratricopept 98.0 2.3E-05 5E-10 43.3 4.6 34 289-322 1-34 (34)
241 KOG4507 Uncharacterized conser 97.9 0.0016 3.4E-08 59.8 18.1 122 59-201 197-318 (886)
242 PF10300 DUF3808: Protein of u 97.9 0.0017 3.7E-08 61.0 18.8 168 212-466 200-378 (468)
243 PF02259 FAT: FAT domain; Int 97.9 0.0065 1.4E-07 55.5 22.5 66 402-467 253-341 (352)
244 COG3118 Thioredoxin domain-con 97.9 0.00086 1.9E-08 56.4 14.6 135 167-322 135-269 (304)
245 KOG0376 Serine-threonine phosp 97.9 3.3E-05 7.1E-10 68.9 6.5 111 170-301 8-118 (476)
246 PF13281 DUF4071: Domain of un 97.8 0.011 2.4E-07 52.7 21.6 127 165-304 140-274 (374)
247 PF13281 DUF4071: Domain of un 97.8 0.0037 8.1E-08 55.6 18.7 167 142-323 151-339 (374)
248 KOG2300 Uncharacterized conser 97.8 0.022 4.7E-07 51.5 33.9 419 12-468 14-518 (629)
249 PF10300 DUF3808: Protein of u 97.8 0.001 2.2E-08 62.5 15.9 89 144-232 245-337 (468)
250 COG2976 Uncharacterized protei 97.8 0.0038 8.3E-08 49.2 15.9 116 150-287 70-191 (207)
251 KOG0530 Protein farnesyltransf 97.8 0.014 3.1E-07 48.3 19.5 162 148-330 59-228 (318)
252 PF03704 BTAD: Bacterial trans 97.7 0.0022 4.8E-08 49.9 14.4 115 79-228 10-124 (146)
253 PF02259 FAT: FAT domain; Int 97.7 0.028 6.2E-07 51.3 23.8 160 162-321 142-341 (352)
254 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.031 6.7E-07 50.1 28.5 404 28-466 30-497 (660)
255 PF08424 NRDE-2: NRDE-2, neces 97.6 0.0068 1.5E-07 54.1 17.4 149 153-319 6-184 (321)
256 KOG1308 Hsp70-interacting prot 97.6 2.1E-05 4.6E-10 66.8 1.5 91 142-232 124-214 (377)
257 PF13174 TPR_6: Tetratricopept 97.6 0.00012 2.6E-09 40.0 3.9 33 436-468 1-33 (33)
258 KOG0551 Hsp90 co-chaperone CNS 97.6 0.00019 4.1E-09 60.9 6.3 92 142-233 91-186 (390)
259 PF13176 TPR_7: Tetratricopept 97.6 0.00019 4.1E-09 40.1 4.3 31 437-467 1-31 (36)
260 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0017 3.8E-08 55.3 11.7 93 11-105 87-183 (390)
261 PF04910 Tcf25: Transcriptiona 97.6 0.0057 1.2E-07 55.1 15.9 147 157-323 31-227 (360)
262 PF03704 BTAD: Bacterial trans 97.5 0.0046 9.9E-08 48.2 13.5 91 172-283 12-124 (146)
263 PF13181 TPR_8: Tetratricopept 97.5 0.00021 4.6E-09 39.4 4.3 30 202-231 3-32 (34)
264 COG0790 FOG: TPR repeat, SEL1 97.5 0.044 9.5E-07 48.5 21.1 155 268-466 90-268 (292)
265 PF10345 Cohesin_load: Cohesin 97.5 0.12 2.6E-06 51.0 35.3 297 149-462 38-431 (608)
266 PF13181 TPR_8: Tetratricopept 97.5 0.00021 4.5E-09 39.4 3.8 32 290-321 2-33 (34)
267 KOG1258 mRNA processing protei 97.5 0.093 2E-06 49.1 26.0 300 146-466 59-397 (577)
268 PF08424 NRDE-2: NRDE-2, neces 97.4 0.052 1.1E-06 48.5 20.4 166 62-286 6-185 (321)
269 COG2909 MalT ATP-dependent tra 97.4 0.14 3.1E-06 50.2 27.5 110 199-322 414-530 (894)
270 PF07079 DUF1347: Protein of u 97.4 0.084 1.8E-06 47.5 20.8 108 207-315 386-521 (549)
271 PF13176 TPR_7: Tetratricopept 97.4 0.0004 8.6E-09 38.8 4.4 31 77-107 1-31 (36)
272 KOG0890 Protein kinase of the 97.4 0.31 6.7E-06 53.3 29.2 104 364-467 1665-1787(2382)
273 PF07079 DUF1347: Protein of u 97.4 0.1 2.2E-06 47.0 31.5 140 11-160 12-156 (549)
274 PF08631 SPO22: Meiosis protei 97.4 0.086 1.9E-06 46.1 26.9 155 143-318 4-186 (278)
275 PF04910 Tcf25: Transcriptiona 97.4 0.043 9.4E-07 49.6 19.0 169 67-287 32-225 (360)
276 KOG0530 Protein farnesyltransf 97.4 0.066 1.4E-06 44.5 19.1 141 148-303 94-236 (318)
277 KOG1308 Hsp70-interacting prot 97.3 0.00027 5.8E-09 60.4 4.5 94 173-287 121-214 (377)
278 COG0790 FOG: TPR repeat, SEL1 97.3 0.044 9.6E-07 48.5 18.5 153 145-321 90-269 (292)
279 KOG0890 Protein kinase of the 97.3 0.26 5.6E-06 53.8 25.9 264 170-467 1453-1734(2382)
280 KOG0985 Vesicle coat protein c 97.3 0.054 1.2E-06 53.7 19.4 225 38-312 1102-1335(1666)
281 COG2976 Uncharacterized protei 97.3 0.035 7.5E-07 44.0 14.9 120 184-322 70-192 (207)
282 KOG1914 mRNA cleavage and poly 97.2 0.18 4E-06 46.5 35.2 407 20-466 34-503 (656)
283 PF13174 TPR_6: Tetratricopept 97.2 0.00077 1.7E-08 36.7 3.9 31 202-232 2-32 (33)
284 PF14561 TPR_20: Tetratricopep 97.1 0.0088 1.9E-07 41.6 9.2 76 150-225 6-83 (90)
285 KOG3824 Huntingtin interacting 97.1 0.0019 4.2E-08 54.4 6.9 66 144-209 128-193 (472)
286 KOG4507 Uncharacterized conser 97.0 0.0041 8.8E-08 57.3 9.0 103 142-244 617-720 (886)
287 COG4649 Uncharacterized protei 97.0 0.11 2.5E-06 40.2 15.4 159 82-300 46-211 (221)
288 PRK10941 hypothetical protein; 97.0 0.011 2.3E-07 50.7 10.5 76 168-243 183-258 (269)
289 PF10345 Cohesin_load: Cohesin 96.9 0.47 1E-05 46.8 35.6 267 15-313 70-428 (608)
290 KOG1464 COP9 signalosome, subu 96.9 0.19 4.1E-06 42.1 17.0 215 53-303 39-286 (440)
291 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0069 1.5E-07 36.9 6.3 39 201-239 2-40 (53)
292 KOG2041 WD40 repeat protein [G 96.9 0.32 6.9E-06 46.5 19.6 241 159-461 686-936 (1189)
293 KOG3824 Huntingtin interacting 96.8 0.0048 1E-07 52.1 7.1 73 171-243 121-193 (472)
294 PF09613 HrpB1_HrpK: Bacterial 96.8 0.015 3.2E-07 44.8 9.0 75 143-217 21-95 (160)
295 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0085 1.9E-07 36.5 5.9 43 167-209 2-44 (53)
296 KOG2041 WD40 repeat protein [G 96.7 0.64 1.4E-05 44.6 22.9 195 57-315 679-878 (1189)
297 KOG2396 HAT (Half-A-TPR) repea 96.7 0.52 1.1E-05 43.3 28.6 95 149-243 88-183 (568)
298 PF04781 DUF627: Protein of un 96.6 0.057 1.2E-06 38.5 10.3 46 273-318 62-107 (111)
299 PF12968 DUF3856: Domain of Un 96.6 0.026 5.7E-07 40.4 8.1 100 167-283 8-128 (144)
300 PF14561 TPR_20: Tetratricopep 96.5 0.05 1.1E-06 37.8 9.4 60 185-244 7-68 (90)
301 smart00028 TPR Tetratricopepti 96.5 0.0054 1.2E-07 32.9 3.9 30 168-197 3-32 (34)
302 PF09613 HrpB1_HrpK: Bacterial 96.5 0.095 2.1E-06 40.4 11.4 77 168-244 12-88 (160)
303 KOG1464 COP9 signalosome, subu 96.5 0.17 3.6E-06 42.4 13.5 197 267-468 39-264 (440)
304 COG2909 MalT ATP-dependent tra 96.5 1.1 2.3E-05 44.5 30.6 214 73-321 413-650 (894)
305 smart00028 TPR Tetratricopepti 96.4 0.0064 1.4E-07 32.5 3.9 32 201-232 2-33 (34)
306 PRK10941 hypothetical protein; 96.4 0.017 3.7E-07 49.5 8.1 65 263-327 189-253 (269)
307 KOG3807 Predicted membrane pro 96.4 0.56 1.2E-05 40.6 16.9 204 51-295 194-402 (556)
308 PF09986 DUF2225: Uncharacteri 96.4 0.035 7.6E-07 45.9 9.5 86 382-467 90-197 (214)
309 COG3914 Spy Predicted O-linked 96.4 0.18 3.9E-06 47.1 14.5 142 149-305 48-192 (620)
310 KOG1258 mRNA processing protei 96.3 0.98 2.1E-05 42.6 33.3 119 56-196 60-181 (577)
311 KOG3783 Uncharacterized conser 96.3 0.93 2E-05 42.2 23.0 243 184-467 251-523 (546)
312 PF04781 DUF627: Protein of un 96.2 0.015 3.3E-07 41.3 5.6 106 81-229 2-107 (111)
313 COG3914 Spy Predicted O-linked 96.2 1.1 2.4E-05 42.2 18.5 132 180-332 45-185 (620)
314 PF09986 DUF2225: Uncharacteri 96.1 0.099 2.1E-06 43.3 10.8 49 179-227 90-145 (214)
315 KOG2422 Uncharacterized conser 96.1 0.68 1.5E-05 43.4 16.5 159 142-321 248-451 (665)
316 PF13374 TPR_10: Tetratricopep 96.1 0.018 4E-07 33.2 4.6 31 436-466 3-33 (42)
317 PF10602 RPN7: 26S proteasome 96.0 0.16 3.5E-06 40.8 11.2 102 166-284 36-142 (177)
318 COG4976 Predicted methyltransf 96.0 0.013 2.8E-07 47.5 4.8 59 176-234 5-63 (287)
319 COG4649 Uncharacterized protei 96.0 0.49 1.1E-05 36.9 12.8 54 51-104 68-123 (221)
320 PRK15180 Vi polysaccharide bio 96.0 0.055 1.2E-06 49.0 9.1 124 177-321 300-423 (831)
321 KOG2396 HAT (Half-A-TPR) repea 96.0 1.3 2.9E-05 40.8 33.6 82 27-109 92-174 (568)
322 TIGR02561 HrpB1_HrpK type III 96.0 0.066 1.4E-06 40.5 8.0 74 144-217 22-95 (153)
323 COG4976 Predicted methyltransf 95.8 0.019 4.1E-07 46.5 5.1 60 265-324 5-64 (287)
324 PF04190 DUF410: Protein of un 95.8 1.1 2.5E-05 38.5 17.4 80 149-229 74-170 (260)
325 COG5107 RNA14 Pre-mRNA 3'-end 95.7 1.6 3.4E-05 39.8 25.6 296 154-465 30-363 (660)
326 COG5191 Uncharacterized conser 95.7 0.027 5.7E-07 47.9 5.7 89 154-242 95-184 (435)
327 KOG3364 Membrane protein invol 95.6 0.18 3.9E-06 37.3 8.7 60 268-327 48-109 (149)
328 KOG0128 RNA-binding protein SA 95.5 2.9 6.3E-05 41.2 31.6 266 19-325 93-383 (881)
329 KOG1538 Uncharacterized conser 95.5 2.5 5.5E-05 40.4 18.3 58 41-100 586-657 (1081)
330 KOG0529 Protein geranylgeranyl 95.4 1.1 2.3E-05 40.3 14.6 163 149-328 46-234 (421)
331 PF12968 DUF3856: Domain of Un 95.4 0.68 1.5E-05 33.5 14.2 115 291-466 9-131 (144)
332 TIGR02561 HrpB1_HrpK type III 95.4 0.28 6E-06 37.2 9.4 73 171-243 15-87 (153)
333 PF04053 Coatomer_WDAD: Coatom 95.4 0.22 4.8E-06 46.4 11.0 129 52-228 272-401 (443)
334 PF13374 TPR_10: Tetratricopep 95.3 0.044 9.6E-07 31.5 4.3 31 75-105 2-32 (42)
335 KOG3364 Membrane protein invol 95.3 0.46 9.9E-06 35.3 9.9 76 166-241 32-112 (149)
336 KOG0529 Protein geranylgeranyl 95.2 2.1 4.5E-05 38.6 15.6 141 148-297 91-237 (421)
337 KOG3807 Predicted membrane pro 95.0 2 4.4E-05 37.4 14.5 52 15-70 194-245 (556)
338 KOG1839 Uncharacterized protei 95.0 0.24 5.1E-06 51.0 10.6 154 144-318 944-1128(1236)
339 PF12862 Apc5: Anaphase-promot 94.8 0.12 2.7E-06 36.3 6.1 57 411-467 8-73 (94)
340 COG3629 DnrI DNA-binding trans 94.7 0.41 8.9E-06 41.1 9.9 77 389-465 141-217 (280)
341 KOG1310 WD40 repeat protein [G 94.7 0.16 3.5E-06 46.7 7.7 93 143-235 385-480 (758)
342 KOG1310 WD40 repeat protein [G 94.6 0.14 3E-06 47.1 7.2 93 212-322 386-478 (758)
343 PF10602 RPN7: 26S proteasome 94.5 1.1 2.3E-05 36.1 11.4 95 368-462 35-140 (177)
344 COG2912 Uncharacterized conser 94.5 0.34 7.4E-06 41.0 8.8 76 168-243 183-258 (269)
345 KOG3783 Uncharacterized conser 94.4 4.4 9.6E-05 38.0 20.4 254 149-434 250-524 (546)
346 PF07721 TPR_4: Tetratricopept 94.4 0.061 1.3E-06 27.2 2.7 25 75-99 1-25 (26)
347 COG5191 Uncharacterized conser 94.4 0.13 2.9E-06 43.8 6.1 87 222-329 95-182 (435)
348 PF10516 SHNi-TPR: SHNi-TPR; 94.4 0.093 2E-06 29.3 3.6 31 436-466 2-32 (38)
349 PF07721 TPR_4: Tetratricopept 94.3 0.07 1.5E-06 26.9 2.8 24 436-459 2-25 (26)
350 PRK15180 Vi polysaccharide bio 94.2 4.5 9.7E-05 37.3 23.7 126 51-199 299-424 (831)
351 PRK13184 pknD serine/threonine 94.0 8.6 0.00019 39.8 21.1 96 141-237 484-589 (932)
352 PRK13184 pknD serine/threonine 94.0 8.7 0.00019 39.7 24.7 220 79-314 479-713 (932)
353 PF10516 SHNi-TPR: SHNi-TPR; 93.7 0.18 3.8E-06 28.2 3.9 30 76-105 2-31 (38)
354 COG3629 DnrI DNA-binding trans 93.6 0.85 1.8E-05 39.3 9.6 64 166-229 153-216 (280)
355 PRK11619 lytic murein transgly 93.5 8.7 0.00019 38.2 29.4 51 267-317 324-374 (644)
356 COG1747 Uncharacterized N-term 93.5 6.6 0.00014 36.7 16.3 60 174-233 213-292 (711)
357 PF15015 NYD-SP12_N: Spermatog 93.4 0.71 1.5E-05 41.4 9.0 77 169-245 231-310 (569)
358 PF11207 DUF2989: Protein of u 93.4 1.5 3.3E-05 35.4 10.1 42 268-309 153-198 (203)
359 PF07720 TPR_3: Tetratricopept 93.3 0.39 8.5E-06 26.5 4.8 20 203-222 4-23 (36)
360 PF07720 TPR_3: Tetratricopept 93.3 0.31 6.7E-06 26.9 4.4 33 167-199 2-36 (36)
361 PF12862 Apc5: Anaphase-promot 93.2 0.39 8.4E-06 33.8 6.1 57 175-231 7-72 (94)
362 KOG1839 Uncharacterized protei 93.0 1.4 3E-05 45.7 11.5 160 261-466 938-1130(1236)
363 PF11207 DUF2989: Protein of u 92.9 3 6.6E-05 33.8 11.1 43 144-186 152-198 (203)
364 COG2912 Uncharacterized conser 92.8 0.32 7E-06 41.2 5.9 65 263-327 189-253 (269)
365 PF10579 Rapsyn_N: Rapsyn N-te 92.6 1.7 3.6E-05 28.9 7.6 37 207-243 13-49 (80)
366 smart00299 CLH Clathrin heavy 92.5 3.8 8.3E-05 31.4 15.0 119 267-447 19-137 (140)
367 KOG4814 Uncharacterized conser 92.4 11 0.00024 36.3 18.8 102 203-319 357-458 (872)
368 COG3947 Response regulator con 92.1 0.93 2E-05 38.6 7.6 62 404-465 282-343 (361)
369 PF10579 Rapsyn_N: Rapsyn N-te 92.0 1.3 2.8E-05 29.5 6.7 58 408-465 13-73 (80)
370 PF10373 EST1_DNA_bind: Est1 D 91.9 0.75 1.6E-05 40.3 7.6 61 185-245 1-61 (278)
371 PRK11619 lytic murein transgly 91.4 17 0.00036 36.3 25.3 79 385-463 295-374 (644)
372 PF04053 Coatomer_WDAD: Coatom 91.4 13 0.00028 35.0 15.9 84 144-245 273-358 (443)
373 PF15015 NYD-SP12_N: Spermatog 90.9 2.5 5.4E-05 38.2 9.3 55 261-315 234-288 (569)
374 PF00244 14-3-3: 14-3-3 protei 90.6 9.8 0.00021 32.3 13.1 59 261-319 7-67 (236)
375 COG3947 Response regulator con 90.2 1.5 3.3E-05 37.4 7.2 59 169-227 282-340 (361)
376 KOG2581 26S proteasome regulat 89.9 15 0.00032 33.3 13.4 131 176-323 136-281 (493)
377 TIGR03504 FimV_Cterm FimV C-te 89.8 0.73 1.6E-05 26.8 3.6 25 439-463 3-27 (44)
378 COG5159 RPN6 26S proteasome re 89.7 12 0.00027 32.1 18.8 161 142-317 13-193 (421)
379 smart00386 HAT HAT (Half-A-TPR 89.0 1.2 2.5E-05 23.5 4.1 30 415-444 1-30 (33)
380 COG4455 ImpE Protein of avirul 88.9 1.7 3.6E-05 35.5 6.2 57 143-199 12-68 (273)
381 PF10373 EST1_DNA_bind: Est1 D 88.5 2.2 4.9E-05 37.3 7.7 62 151-212 1-62 (278)
382 PF12854 PPR_1: PPR repeat 88.3 1.3 2.8E-05 24.0 3.8 28 73-100 5-32 (34)
383 cd02682 MIT_AAA_Arch MIT: doma 88.3 3.9 8.5E-05 27.1 6.6 50 370-444 7-56 (75)
384 smart00386 HAT HAT (Half-A-TPR 88.1 1.7 3.8E-05 22.8 4.4 29 214-242 1-29 (33)
385 PF11817 Foie-gras_1: Foie gra 87.8 17 0.00036 31.2 13.9 75 386-460 162-243 (247)
386 TIGR03504 FimV_Cterm FimV C-te 87.3 1.5 3.3E-05 25.5 3.9 26 293-318 3-28 (44)
387 KOG1463 26S proteasome regulat 87.2 21 0.00045 31.7 17.3 87 374-460 214-312 (411)
388 COG4455 ImpE Protein of avirul 87.2 14 0.00031 30.4 10.3 64 173-236 8-71 (273)
389 PF12854 PPR_1: PPR repeat 87.1 2.1 4.6E-05 23.2 4.2 26 200-225 7-32 (34)
390 KOG2422 Uncharacterized conser 87.0 29 0.00063 33.2 18.8 178 53-287 250-451 (665)
391 KOG4279 Serine/threonine prote 86.9 11 0.00023 37.1 11.1 188 74-298 200-409 (1226)
392 KOG0546 HSP90 co-chaperone CPR 86.2 1.4 3.1E-05 38.7 4.8 78 166-243 275-352 (372)
393 KOG0276 Vesicle coat complex C 85.5 5.8 0.00013 37.8 8.5 80 142-226 647-747 (794)
394 PF10255 Paf67: RNA polymerase 85.2 20 0.00042 33.1 11.6 57 261-317 128-192 (404)
395 KOG2581 26S proteasome regulat 84.4 32 0.0007 31.4 12.6 66 369-434 209-280 (493)
396 PF10255 Paf67: RNA polymerase 84.3 20 0.00044 33.0 11.3 59 371-429 124-192 (404)
397 PF11817 Foie-gras_1: Foie gra 83.5 28 0.0006 29.9 15.5 55 261-315 184-244 (247)
398 PF12739 TRAPPC-Trs85: ER-Golg 83.3 40 0.00087 31.6 16.5 113 77-195 210-329 (414)
399 PF11846 DUF3366: Domain of un 82.5 5.4 0.00012 32.6 6.7 49 417-466 127-175 (193)
400 KOG0276 Vesicle coat complex C 82.4 17 0.00037 34.9 10.1 68 27-104 628-695 (794)
401 PF13041 PPR_2: PPR repeat fam 82.2 4.2 9.1E-05 24.3 4.5 28 403-430 5-32 (50)
402 PF09670 Cas_Cas02710: CRISPR- 82.0 30 0.00065 31.9 11.8 62 168-229 133-198 (379)
403 KOG1538 Uncharacterized conser 81.5 56 0.0012 32.0 16.8 79 142-226 566-658 (1081)
404 PF12753 Nro1: Nuclear pore co 81.3 14 0.00031 33.4 8.9 32 417-450 334-365 (404)
405 cd02682 MIT_AAA_Arch MIT: doma 81.1 3.9 8.5E-05 27.1 4.2 22 407-428 12-33 (75)
406 KOG4014 Uncharacterized conser 80.5 28 0.0006 27.9 14.7 167 145-318 48-233 (248)
407 PF04190 DUF410: Protein of un 80.3 38 0.00082 29.3 17.5 81 364-464 85-170 (260)
408 TIGR00756 PPR pentatricopeptid 80.3 5 0.00011 21.2 4.1 26 438-463 3-28 (35)
409 COG4941 Predicted RNA polymera 80.0 43 0.00094 29.8 16.5 170 53-241 208-406 (415)
410 PF13041 PPR_2: PPR repeat fam 79.9 10 0.00022 22.6 6.2 31 289-319 3-33 (50)
411 COG1747 Uncharacterized N-term 79.8 56 0.0012 31.0 21.1 76 167-244 67-142 (711)
412 KOG4014 Uncharacterized conser 79.6 30 0.00065 27.7 15.1 196 231-466 31-235 (248)
413 PF01535 PPR: PPR repeat; Int 79.1 3.9 8.5E-05 21.0 3.2 25 203-227 3-27 (31)
414 PF09670 Cas_Cas02710: CRISPR- 78.9 33 0.00071 31.7 11.0 54 142-195 141-198 (379)
415 PF01535 PPR: PPR repeat; Int 78.8 3.7 7.9E-05 21.1 3.1 26 292-317 3-28 (31)
416 PF09205 DUF1955: Domain of un 78.0 21 0.00045 26.9 7.4 55 410-464 95-149 (161)
417 PF14863 Alkyl_sulf_dimr: Alky 77.2 8.2 0.00018 29.5 5.5 50 166-215 70-119 (141)
418 COG5159 RPN6 26S proteasome re 77.0 49 0.0011 28.7 20.8 202 51-285 13-236 (421)
419 KOG0546 HSP90 co-chaperone CPR 76.4 5.4 0.00012 35.3 4.8 61 267-327 287-347 (372)
420 COG5536 BET4 Protein prenyltra 75.9 52 0.0011 28.4 11.3 166 149-329 49-233 (328)
421 KOG2114 Vacuolar assembly/sort 75.9 95 0.0021 31.5 16.9 112 173-312 341-454 (933)
422 cd02680 MIT_calpain7_2 MIT: do 75.7 5.6 0.00012 26.4 3.7 18 144-161 18-35 (75)
423 COG5536 BET4 Protein prenyltra 75.1 20 0.00043 30.8 7.5 139 148-298 90-236 (328)
424 PF11846 DUF3366: Domain of un 74.8 12 0.00026 30.6 6.4 50 271-321 127-176 (193)
425 KOG2114 Vacuolar assembly/sort 74.8 1E+02 0.0022 31.3 23.5 55 409-466 713-767 (933)
426 cd02681 MIT_calpain7_1 MIT: do 73.9 7.3 0.00016 26.0 3.9 17 144-160 18-34 (76)
427 cd02677 MIT_SNX15 MIT: domain 73.5 5.7 0.00012 26.4 3.4 21 410-430 15-35 (75)
428 PF14863 Alkyl_sulf_dimr: Alky 72.6 12 0.00026 28.6 5.4 50 404-453 73-122 (141)
429 PF09797 NatB_MDM20: N-acetylt 72.4 22 0.00047 32.7 8.2 47 145-191 196-242 (365)
430 PF04212 MIT: MIT (microtubule 71.6 7.7 0.00017 25.3 3.7 15 91-105 2-16 (69)
431 PHA02537 M terminase endonucle 71.5 8.6 0.00019 32.2 4.7 93 142-234 93-212 (230)
432 PF12739 TRAPPC-Trs85: ER-Golg 71.3 92 0.002 29.3 15.5 28 441-468 376-403 (414)
433 PF04212 MIT: MIT (microtubule 70.5 9.8 0.00021 24.8 4.0 23 407-429 11-33 (69)
434 cd02681 MIT_calpain7_1 MIT: do 69.7 14 0.0003 24.7 4.5 25 405-429 10-34 (76)
435 KOG2063 Vacuolar assembly/sort 69.6 1.5E+02 0.0032 30.9 19.3 176 202-398 506-713 (877)
436 KOG4279 Serine/threonine prote 69.6 1.1E+02 0.0024 30.7 11.9 184 199-434 200-399 (1226)
437 PF13812 PPR_3: Pentatricopept 69.5 15 0.00031 19.3 4.1 27 291-317 3-29 (34)
438 smart00671 SEL1 Sel1-like repe 67.2 13 0.00029 19.9 3.6 29 436-464 2-34 (36)
439 PF09205 DUF1955: Domain of un 67.1 53 0.0011 24.8 10.8 50 178-227 98-147 (161)
440 PF09797 NatB_MDM20: N-acetylt 65.6 42 0.00091 30.9 8.5 47 180-226 197-243 (365)
441 KOG4521 Nuclear pore complex, 65.4 2E+02 0.0042 30.8 15.0 156 75-245 920-1112(1480)
442 cd02679 MIT_spastin MIT: domai 65.4 11 0.00024 25.3 3.5 17 89-105 3-19 (79)
443 cd02683 MIT_1 MIT: domain cont 64.7 18 0.00039 24.3 4.4 24 406-429 11-34 (77)
444 COG5187 RPN7 26S proteasome re 64.5 98 0.0021 27.0 13.9 103 367-469 113-226 (412)
445 PF08238 Sel1: Sel1 repeat; I 64.4 17 0.00037 19.9 3.8 28 436-463 2-36 (39)
446 cd02677 MIT_SNX15 MIT: domain 64.4 40 0.00086 22.5 6.3 22 84-105 15-36 (75)
447 PHA02537 M terminase endonucle 64.1 28 0.0006 29.3 6.2 33 167-199 170-211 (230)
448 KOG0292 Vesicle coat complex C 63.9 1E+02 0.0022 31.5 10.7 120 79-203 995-1121(1202)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 63.3 61 0.0013 24.3 14.3 43 150-192 81-125 (126)
450 KOG1497 COP9 signalosome, subu 63.3 1.1E+02 0.0024 27.2 11.0 101 166-283 103-212 (399)
451 smart00299 CLH Clathrin heavy 62.3 67 0.0015 24.4 13.4 47 177-224 18-64 (140)
452 cd02684 MIT_2 MIT: domain cont 62.2 17 0.00037 24.2 3.9 15 91-105 3-17 (75)
453 PF10952 DUF2753: Protein of u 61.7 51 0.0011 24.4 6.3 67 169-235 4-89 (140)
454 COG4259 Uncharacterized protei 61.7 37 0.00079 23.9 5.4 34 435-468 72-105 (121)
455 KOG0687 26S proteasome regulat 61.4 1.2E+02 0.0026 27.0 9.6 101 368-468 103-214 (393)
456 TIGR02710 CRISPR-associated pr 61.2 1.3E+02 0.0029 27.7 10.4 50 142-191 140-196 (380)
457 PRK15490 Vi polysaccharide bio 60.7 45 0.00098 32.4 7.8 78 145-224 21-98 (578)
458 KOG4521 Nuclear pore complex, 60.4 2.4E+02 0.0052 30.2 14.6 166 142-320 930-1134(1480)
459 PF10952 DUF2753: Protein of u 59.7 39 0.00085 25.0 5.5 64 261-324 7-89 (140)
460 KOG0687 26S proteasome regulat 59.1 1.3E+02 0.0029 26.8 10.9 105 165-287 103-213 (393)
461 cd02678 MIT_VPS4 MIT: domain c 58.9 21 0.00046 23.7 4.0 15 91-105 3-17 (75)
462 cd02679 MIT_spastin MIT: domai 58.5 24 0.00053 23.8 4.1 20 446-465 19-38 (79)
463 KOG0686 COP9 signalosome, subu 58.3 69 0.0015 29.4 7.9 104 167-283 151-257 (466)
464 KOG0686 COP9 signalosome, subu 57.1 75 0.0016 29.2 7.9 92 370-461 151-255 (466)
465 PF02184 HAT: HAT (Half-A-TPR) 56.9 29 0.00064 18.6 3.5 25 271-296 3-27 (32)
466 cd02683 MIT_1 MIT: domain cont 56.9 57 0.0012 21.9 7.8 40 371-435 8-47 (77)
467 PF01239 PPTA: Protein prenylt 56.6 28 0.0006 18.1 4.3 29 420-448 2-30 (31)
468 PF13226 DUF4034: Domain of un 56.5 65 0.0014 28.1 7.4 103 142-245 10-144 (277)
469 KOG0292 Vesicle coat complex C 55.8 63 0.0014 32.9 7.9 52 138-194 649-700 (1202)
470 PF02064 MAS20: MAS20 protein 55.7 21 0.00045 26.4 3.8 29 439-467 67-95 (121)
471 PF12583 TPPII_N: Tripeptidyl 55.1 56 0.0012 24.5 5.7 38 410-447 85-122 (139)
472 smart00745 MIT Microtubule Int 54.5 35 0.00075 22.7 4.5 23 407-429 14-36 (77)
473 KOG0128 RNA-binding protein SA 54.5 2.6E+02 0.0056 28.7 29.5 256 39-331 78-354 (881)
474 PF07219 HemY_N: HemY protein 52.7 86 0.0019 22.7 6.6 48 168-215 61-108 (108)
475 KOG4151 Myosin assembly protei 51.8 46 0.00099 33.2 6.3 96 142-237 63-164 (748)
476 PF13226 DUF4034: Domain of un 51.0 1.7E+02 0.0037 25.6 11.1 133 174-306 8-150 (277)
477 cd02678 MIT_VPS4 MIT: domain c 50.7 45 0.00098 22.1 4.5 23 407-429 12-34 (75)
478 TIGR02996 rpt_mate_G_obs repea 50.0 49 0.0011 19.0 3.8 32 423-454 4-35 (42)
479 cd02680 MIT_calpain7_2 MIT: do 49.1 40 0.00087 22.5 3.9 19 411-429 16-34 (75)
480 KOG2561 Adaptor protein NUB1, 48.5 1.8E+02 0.0039 27.2 8.9 99 169-283 166-295 (568)
481 cd02656 MIT MIT: domain contai 48.3 51 0.0011 21.8 4.6 22 408-429 13-34 (75)
482 PRK12798 chemotaxis protein; R 48.2 2.3E+02 0.0051 26.4 17.7 218 26-281 97-321 (421)
483 PF02064 MAS20: MAS20 protein 47.6 49 0.0011 24.6 4.6 30 171-200 68-97 (121)
484 KOG4151 Myosin assembly protei 47.5 49 0.0011 33.1 5.8 116 171-307 58-179 (748)
485 KOG4814 Uncharacterized conser 47.2 3E+02 0.0065 27.3 28.7 94 11-106 360-459 (872)
486 PF12753 Nro1: Nuclear pore co 46.2 42 0.00092 30.6 4.8 47 384-430 333-391 (404)
487 PF08626 TRAPPC9-Trs120: Trans 45.6 3.1E+02 0.0067 30.3 12.0 148 75-228 242-473 (1185)
488 KOG1463 26S proteasome regulat 44.7 2.4E+02 0.0052 25.5 22.7 270 144-432 16-318 (411)
489 TIGR03362 VI_chp_7 type VI sec 44.5 2.3E+02 0.005 25.2 16.6 153 53-229 111-279 (301)
490 PF04348 LppC: LppC putative l 44.0 7.6 0.00016 37.7 0.0 72 29-100 12-86 (536)
491 PF05053 Menin: Menin; InterP 44.0 1.1E+02 0.0024 29.5 7.3 88 116-226 252-344 (618)
492 cd00280 TRFH Telomeric Repeat 43.8 1.7E+02 0.0038 23.6 8.5 68 148-216 85-160 (200)
493 cd02684 MIT_2 MIT: domain cont 43.8 64 0.0014 21.5 4.4 21 409-429 14-34 (75)
494 PF14689 SPOB_a: Sensor_kinase 42.9 86 0.0019 19.9 4.7 30 164-193 21-50 (62)
495 TIGR02710 CRISPR-associated pr 42.8 2.8E+02 0.006 25.7 12.8 54 172-225 136-196 (380)
496 KOG2063 Vacuolar assembly/sort 42.8 4.2E+02 0.0092 27.8 15.5 27 77-103 506-532 (877)
497 KOG2561 Adaptor protein NUB1, 42.5 2.9E+02 0.0064 25.9 9.7 27 202-228 269-295 (568)
498 COG4259 Uncharacterized protei 42.3 1.2E+02 0.0027 21.5 5.7 40 398-437 69-108 (121)
499 KOG1920 IkappaB kinase complex 41.9 4.8E+02 0.01 28.2 19.1 243 187-463 778-1027(1265)
500 KOG1938 Protein with predicted 41.8 3.6E+02 0.0079 28.2 10.7 138 183-321 241-387 (960)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2e-47 Score=335.10 Aligned_cols=364 Identities=18% Similarity=0.198 Sum_probs=228.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-|+.+.+.|+...++ ..+..++++.|++..+|.++|.+ +..+|+.+.|..+|..+++++|+...++..+|.++...|+
T Consensus 122 ~aN~~kerg~~~~al-~~y~~aiel~p~fida~inla~a-l~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 122 LANILKERGQLQDAL-ALYRAAIELKPKFIDAYINLAAA-LVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred HHHHHHHhchHHHHH-HHHHHHHhcCchhhHHHhhHHHH-HHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc
Confidence 355566666666666 66666667777766667776666 6666666677777766666777666666666766666677
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 170 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 170 (470)
..+|..+|.+|++..|. .+.+|.++|-+ ...+|+...|+..|++++.++|..+++|+
T Consensus 200 l~ea~~cYlkAi~~qp~------------fAiawsnLg~~-----------f~~~Gei~~aiq~y~eAvkldP~f~dAYi 256 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPC------------FAIAWSNLGCV-----------FNAQGEIWLAIQHYEEAVKLDPNFLDAYI 256 (966)
T ss_pred cchhHHHHHHHHhhCCc------------eeeeehhcchH-----------HhhcchHHHHHHHHHHhhcCCCcchHHHh
Confidence 77777777666665432 11223333333 33445557777777777777777777777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
++|.+|...+.+++|+.+|.+++.+.|++..++-++|.+|..+|..+-|+..|++++++.|+.+.++.+++..+.
T Consensus 257 NLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk----- 331 (966)
T KOG4626|consen 257 NLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK----- 331 (966)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-----
Confidence 777777777777777777777777777777777777777777777777777777777777777777777766665
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
..|+..+|..+|.+++.+.|+.+++..+||.+|..+|.+++|...|.++++..|....++.
T Consensus 332 ----------------d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n--- 392 (966)
T KOG4626|consen 332 ----------------DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN--- 392 (966)
T ss_pred ----------------hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh---
Confidence 4677777777777777777777777777777777777777777777777777776554444
Q ss_pred HHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHH
Q 012143 331 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGES 408 (470)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~ 408 (470)
++|.+|..+|++++|+..|+.++. |...+++.++|
T Consensus 393 -------------------------------------------NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 393 -------------------------------------------NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred -------------------------------------------hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 444455555555555555554322 33344455555
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 409 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 409 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
..|...|+...|+.+|.+|+..+|..++++.+||.+|...|+..+|+..|+.++++-|
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 5555555555555555555555555555555555555555555555555555554443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9e-45 Score=318.45 Aligned_cols=349 Identities=19% Similarity=0.221 Sum_probs=224.3
Q ss_pred HHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 28 KMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 28 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
.-..+++.+|.-.+++.++|.+ +...|++++|...|+.++++.|++.++|.++|.++..+|+...|..+|..+++++|.
T Consensus 104 ~~~~a~r~~~q~ae~ysn~aN~-~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 104 GSLLAIRKNPQGAEAYSNLANI-LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD 182 (966)
T ss_pred hhhhhhhccchHHHHHHHHHHH-HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc
Confidence 3344444555555555555555 555555555555555555555555555555555555555555555555555555443
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHH
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 187 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 187 (470)
.- -+...+|.+ +-..|++.+|..+|.++++..|..+.+|.++|.++..+|+...|+.
T Consensus 183 l~------------ca~s~lgnL-----------lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq 239 (966)
T KOG4626|consen 183 LY------------CARSDLGNL-----------LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ 239 (966)
T ss_pred hh------------hhhcchhHH-----------HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH
Confidence 21 111111111 1223334555555555555555555555555555555555555555
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 188 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
.|+++++++|...++|++||.+|...+.++.|+.+|.+++.+.|++..++-+++.+|. .
T Consensus 240 ~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy---------------------e 298 (966)
T KOG4626|consen 240 HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY---------------------E 298 (966)
T ss_pred HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe---------------------c
Confidence 5555555555555555555555555555555555555555555555555544444443 4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHh
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQL 347 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (470)
+|..+-|+.+|+++++++|+.++++.++|.++...|+..+|..+|.+++.+.|+
T Consensus 299 qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-------------------------- 352 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-------------------------- 352 (966)
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc--------------------------
Confidence 555555555555555555555555555555555555555555555555555555
Q ss_pred hhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHH
Q 012143 348 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLL 425 (470)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 425 (470)
.+.+..++|.++.++|+++.|...|.+++. |.-..++.++|.+|.+.|++++|+.+|+
T Consensus 353 --------------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 353 --------------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred --------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 456788999999999999999999999665 6666889999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 426 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 426 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
.++.+.|..++++.++|.+|..+|+...|+.+|.+|+.+-|.
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 999999999999999999999999999999999999987663
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=8e-38 Score=303.08 Aligned_cols=387 Identities=16% Similarity=0.125 Sum_probs=316.8
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 10 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 10 ~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
..|..+++.|++.+|+ ..|++++...|+ ...|.++|.+ +...|++++|+..++++++.+|++..+++.+|.+|..+|
T Consensus 132 ~~G~~~~~~~~~~~Ai-~~y~~al~~~p~-~~~~~n~a~~-~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAI-KLYSKAIECKPD-PVYYSNRAAC-HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCc-hHHHHHHHHH-HHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 3588899999999999 999999999996 6688999999 999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhhccc-------------------------chhhhHHHHHHhhhcc-------------ccc
Q 012143 90 QPLKAVSSYEKAEEILLRCEADI-------------------------ARPELLSLVQIHHAQC-------------LLP 131 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~-------------~~~ 131 (470)
++++|+..|..+...++...... ..+....... +.... ...
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhhhcccccc
Confidence 99999999877665432211000 0000000000 00000 000
Q ss_pred cccCCCcccc------ccCcccHHHHHHHHHHhhhc---CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH
Q 012143 132 ESSGDNSLDK------ELEPEELEEILSKLKESMQS---DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 202 (470)
Q Consensus 132 ~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 202 (470)
...+...... ....+++++|+..|++++.. .|....++..+|.++..+|++++|+..|+++++++|.+..+
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 367 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS 367 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 0011110000 01235789999999999976 47778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
+..+|.++...|++++|+..|+++++.+|+++.++..+|.++. ..|++++|+.+|++++
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF---------------------IKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888887 6999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
.++|++..++..+|.++..+|++++|+..|++++...|+++
T Consensus 427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~--------------------------------------- 467 (615)
T TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP--------------------------------------- 467 (615)
T ss_pred HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---------------------------------------
Confidence 99999999999999999999999999999999999988854
Q ss_pred CCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh--h------hHhhHHHHH-HHhccHHHHHHHHHHHHhcCCC
Q 012143 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE--C------AGAGESAFL-DQASAVNVAKECLLAALKADPK 433 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~------~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~ 433 (470)
.++..+|.++...|++++|+..|.+++...+. . .+.+.+..+ ...|++++|+..++++++++|+
T Consensus 468 -------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 468 -------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 46677888889999999999999996653221 1 122333333 3469999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 434 AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 434 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+..++..+|.++...|++++|+.+|++++++.++
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998764
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-35 Score=302.37 Aligned_cols=412 Identities=22% Similarity=0.193 Sum_probs=282.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 91 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 91 (470)
|..+...|++.+|+ ..+.++++.+|++...++.+|.+ +...|++++|...+++++..+|.+..++..++.++...|++
T Consensus 472 ~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 472 GAIYLGKGDLAKAR-EAFEKALSIEPDFFPAAANLARI-DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHHhCCCHHHHH-HHHHHHHhhCCCcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCH
Confidence 33344445555555 55555555555555555555555 55555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHH
Q 012143 92 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 171 (470)
Q Consensus 92 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 171 (470)
++|+..+++++...|.+. ..+..++.+ +...|++++|+..+++++...|.++.++..
T Consensus 550 ~~A~~~~~~~~~~~~~~~------------~~~~~l~~~-----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (899)
T TIGR02917 550 EEAVAWLEKAAELNPQEI------------EPALALAQY-----------YLGKGQLKKALAILNEAADAAPDSPEAWLM 606 (899)
T ss_pred HHHHHHHHHHHHhCccch------------hHHHHHHHH-----------HHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 555555555554433211 011112221 456678899999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccc
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~ 251 (470)
+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|++..++..++.++....+..
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888877542221
Q ss_pred cc-------------ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 252 LA-------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 252 ~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.+ ....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|...+++++..
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11 23344556777777788888888888887777775 66677777778888888888888888777
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc-
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS- 397 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 397 (470)
.|++...+..++...... .. ...+...+...+ ...|.++.++..++.++...|+ .+|+..+.+.+.
T Consensus 766 ~~~~~~~~~~la~~~~~~-----g~---~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQ-----KD---YDKAIKHYRTVV----KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CCCCHHHHHHHHHHHHHC-----cC---HHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 777776666555433321 11 111222222222 2245567778888888888888 778888877544
Q ss_pred -chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012143 398 -KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462 (470)
Q Consensus 398 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 462 (470)
+..+..+..+|.++...|++++|+.+|+++++.+|.++.++..++.++...|++++|++.+++++
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55556677788888888888888888888888888888888888888888888888888888776
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-34 Score=296.47 Aligned_cols=434 Identities=19% Similarity=0.162 Sum_probs=296.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-+..+...|++.+++ ..+.+++..+|.+...+..+|.+ +...|++++|...|+++++.+|+++.++..+|.++...|+
T Consensus 335 la~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 335 LASIQLRLGRVDEAI-ATLSPALGLDPDDPAALSLLGEA-YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 456677889999998 88999999999888888899998 8899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhh--------------------hccccccccCCCccccccCcccHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH--------------------AQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
+++|+..|+++++..|...... ...+..+. ....++..+|.. +...|++++
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~ 483 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRAD-----LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI----YLGKGDLAK 483 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH----HHhCCCHHH
Confidence 9999999999988766532110 00000000 000111111111 455666777
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHhhhcccc-------------cccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 231 QNHPAALINYAALLLCKYGSVL-------------AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
|.+...+..++.++....+... .....+..+|.++...|++++|+.+|+++++..|+++.++..+|.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 7777777777766654422211 123455667777778888888888888888888887888888888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 377 (470)
++...|++++|+..|++++...|++...+..++...... .... .+ ...+.......|..+..+..+|.
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~---~A----~~~~~~~~~~~~~~~~~~~~~~~ 711 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA-----KRTE---SA----KKIAKSLQKQHPKAALGFELEGD 711 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHH---HH----HHHHHHHHhhCcCChHHHHHHHH
Confidence 888888888888888888888887776666554432211 1111 11 11111111223345556666777
Q ss_pred HHhccccHHHHHHHHHHHhcchh-hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 012143 378 VQKTHHEVAAAFETEENELSKME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 456 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 456 (470)
++...|++++|+..+...+...+ ...+..++.++...|++++|+..++++++..|+++.+++.+|.++...|++++|+.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 77777777777777766544221 14455666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhcc
Q 012143 457 CLEKVLMVYCS 467 (470)
Q Consensus 457 ~~~~al~~~~~ 467 (470)
+|+++++..|+
T Consensus 792 ~~~~~~~~~p~ 802 (899)
T TIGR02917 792 HYRTVVKKAPD 802 (899)
T ss_pred HHHHHHHhCCC
Confidence 66666665543
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.2e-34 Score=295.25 Aligned_cols=447 Identities=14% Similarity=0.098 Sum_probs=330.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcc-hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADG-DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
.++.+...|++++|+ ..+.++++.+|++.. .......+ ....|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 118 ~A~ll~~~g~~~eA~-~~~~~~l~~~p~~~~la~~y~~~~-~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEAL-ASYDKLFNGAPPELDLAVEYWRLV-AKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHH-HHHHHHccCCCCChHHHHHHHHHH-hhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 345567778888887 777787777776643 12222233 334577777888888888878888777788888887778
Q ss_pred ChhHHHHHHHHHHHHHhhh----------------------------------hccc-------------chhhhH--HH
Q 012143 90 QPLKAVSSYEKAEEILLRC----------------------------------EADI-------------ARPELL--SL 120 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~----------------------------------~~~~-------------~~~~~~--~~ 120 (470)
++++|+..+++++...+.. .... ..|... ..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 8887877777765421100 0000 000000 00
Q ss_pred HHHhhh--------------------ccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH-------------
Q 012143 121 VQIHHA--------------------QCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV------------- 167 (470)
Q Consensus 121 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------- 167 (470)
+..+.. ...++..+|. .+...|++++|+..|+++++.+|++..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~----~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQ----AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 000000 0111112222 266888999999999999999997653
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 168 -VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 168 -~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++.+|++..++..++.++..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 2235688899999999999999999999999999999999999999999999999999999999999999888887753
Q ss_pred hhcc-ccc--------------------ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 012143 247 KYGS-VLA--------------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305 (470)
Q Consensus 247 ~~~~-~~~--------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 305 (470)
.... +.. ....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 2100 000 0123345788889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCcccHHHHHHHHHHH-----HhhhccCch------HHhhh---------------------hHHH
Q 012143 306 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIK-----DAERSQEPT------EQLSW---------------------AGNE 353 (470)
Q Consensus 306 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-----~~~~~~~~~------~~~~~---------------------~~~~ 353 (470)
++|+..+++++...|+++..++.++..... ++....... ..+.. ...+
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999888766543211 010000000 00000 0111
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh--cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC
Q 012143 354 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 431 (470)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 431 (470)
....+. ..|.++..+..+|.++...|++++|+..|++.+ .|.+..+++.++.++...|++++|+..++++++..
T Consensus 592 A~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 592 AEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 222222 345677788999999999999999999999965 47777889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 432 PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 432 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|+++.++..+|.++...|++++|+..|+++++..++
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 999999999999999999999999999999987654
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.2e-33 Score=291.05 Aligned_cols=377 Identities=14% Similarity=0.098 Sum_probs=310.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChh--------------H
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAH--------------A 77 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~ 77 (470)
|..+...|++.+|+ ..++++++.+|++..++..+|.+ +...|++++|+..|+++++.+|++.. .
T Consensus 276 G~~~~~~g~~~~A~-~~l~~aL~~~P~~~~a~~~Lg~~-~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAI-PELQQAVRANPKDSEALGALGQA-YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 66678889999999 99999999999999999999999 99999999999999999999998753 1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHH
Q 012143 78 HFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE 157 (470)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 157 (470)
...+|.++...|++++|+..|+++++.+|.+. .++..++.+ +...|++++|+..|++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~------------~a~~~Lg~~-----------~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDS------------YAVLGLGDV-----------AMARKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHH-----------HHHCCCHHHHHHHHHH
Confidence 23558889999999999999999999987642 223334443 4566778999999999
Q ss_pred hhhcCccchHHHHHHHH------------------------------------------HHHHcCChHHHHHHHHHHhhc
Q 012143 158 SMQSDTRQAVVWNTLGL------------------------------------------ILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 158 ~~~~~p~~~~~~~~l~~------------------------------------------~~~~~~~~~~A~~~~~~a~~~ 195 (470)
+++.+|++..++..++. ++...|++++|+..|+++++.
T Consensus 411 aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998877655544 445679999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc----------------------
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------------------- 253 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~---------------------- 253 (470)
+|+++.+++.+|.++...|++++|+..+++++..+|+++..++.++..+....+...+
T Consensus 491 ~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 491 DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 9999999999999999999999999999999999999999988887665432111100
Q ss_pred -ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHH
Q 012143 254 -GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 254 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
.....+..+..+...|++++|+.+++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~--------- 637 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA--------- 637 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------
Confidence 01112345666777788888877765 4677777888888888888888888888888888777754
Q ss_pred HHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHH
Q 012143 333 RIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAF 410 (470)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 410 (470)
.++..++.++...|++++|+..+...+. +.....+..+|.+
T Consensus 638 -------------------------------------~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 638 -------------------------------------DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 4677788899999999999999998665 4556778889999
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 411 LDQASAVNVAKECLLAALKADPKAA------HIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 411 ~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
+...|++++|+..|++++...|+++ .++..+|.++...|++++|+..|++++.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999876543 4667789999999999999999999985
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.2e-32 Score=267.03 Aligned_cols=345 Identities=15% Similarity=0.086 Sum_probs=282.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhC------------------
Q 012143 10 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKM------------------ 71 (470)
Q Consensus 10 ~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------------------ 71 (470)
.-|..+.++|++++++ ..+.++++.+|++..+|+.+|.+ +...|++++|+..|..+...+
T Consensus 165 n~a~~~~~l~~~~~Ai-~~~~~al~l~p~~~~a~~~~a~a-~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (615)
T TIGR00990 165 NRAACHNALGDWEKVV-EDTTAALELDPDYSKALNRRANA-YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKF 242 (615)
T ss_pred HHHHHHHHhCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 3566788999999999 99999999999999999999999 999999999988776554333
Q ss_pred ------------CCChhHHHHHHHHH---------------------------------H---HhCChhHHHHHHHHHHH
Q 012143 72 ------------PKNAHAHFLLGLMY---------------------------------Q---RLGQPLKAVSSYEKAEE 103 (470)
Q Consensus 72 ------------p~~~~~~~~l~~~~---------------------------------~---~~g~~~~A~~~~~~al~ 103 (470)
|.+...+..+|..+ . ..+++++|+..|+++++
T Consensus 243 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~ 322 (615)
T TIGR00990 243 AESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALD 322 (615)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 22222222222211 1 12578899999999987
Q ss_pred HHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChH
Q 012143 104 ILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ 183 (470)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 183 (470)
..+. .+ ....++..++.+ +...|++++|+..|++++..+|.++.++..+|.++...|+++
T Consensus 323 ~~~~------~~---~~a~a~~~lg~~-----------~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 323 LGKL------GE---KEAIALNLRGTF-----------KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred cCCC------Ch---hhHHHHHHHHHH-----------HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 6311 01 112334444444 346677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhh
Q 012143 184 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 263 (470)
Q Consensus 184 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (470)
+|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|++...+..+|.++.
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~------------------ 444 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY------------------ 444 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH------------------
Confidence 99999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCc
Q 012143 264 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 343 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 343 (470)
..|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|+....+.....
T Consensus 445 ---~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~------------ 509 (615)
T TIGR00990 445 ---KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP------------ 509 (615)
T ss_pred ---HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH------------
Confidence 79999999999999999999999999999999999999999999999999999986543332111
Q ss_pred hHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh--cchhhhhHhhHHHHHHHhccHHHHH
Q 012143 344 TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAK 421 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 421 (470)
.+...+..+...|++++|+..+.+.+ +|....++..+|.++.+.|++++|+
T Consensus 510 ---------------------------l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 510 ---------------------------LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred ---------------------------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 11122223344689999999999854 4555567889999999999999999
Q ss_pred HHHHHHHhcCCCcHH
Q 012143 422 ECLLAALKADPKAAH 436 (470)
Q Consensus 422 ~~~~~al~~~p~~~~ 436 (470)
.+|++++++.+...+
T Consensus 563 ~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 563 KLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHhccHHH
Confidence 999999999887554
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.3e-32 Score=263.90 Aligned_cols=347 Identities=12% Similarity=0.012 Sum_probs=262.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhH
Q 012143 14 KINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLK 93 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 93 (470)
.+...|+..+|. ..+...+...|++..+++.+|.. ....|+++.|...|+++++.+|+++.++..+|.++...|++++
T Consensus 51 ~~~~~g~~~~A~-~l~~~~l~~~p~~~~~l~~l~~~-~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 51 ACLRKDETDVGL-TLLSDRVLTAKNGRDLLRRWVIS-PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHhcCCcchhH-HHhHHHHHhCCCchhHHHHHhhh-HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 355668888887 77888888888888888888877 7788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 173 (470)
|+..|++++.+.|++. .++..++.+ +...|++++|+..+++++...|+++.++..++
T Consensus 129 Ai~~l~~Al~l~P~~~------------~a~~~la~~-----------l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~ 185 (656)
T PRK15174 129 VADLAEQAWLAFSGNS------------QIFALHLRT-----------LVLMDKELQAISLARTQAQEVPPRGDMIATCL 185 (656)
T ss_pred HHHHHHHHHHhCCCcH------------HHHHHHHHH-----------HHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8888888888766532 122223332 34556668888888888888888777776654
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccc
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 252 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 252 (470)
.+...|++++|+..+++++..+|. .......++.++...|++++|+..+++++..+|+++..+..+|.++.
T Consensus 186 -~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~------- 257 (656)
T PRK15174 186 -SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY------- 257 (656)
T ss_pred -HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------
Confidence 467788888888888888777653 33444556777888888888888888888888888888877777776
Q ss_pred cccccchhhhhHHHhcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHH
Q 012143 253 AGAGANTGEGACLDQASAVNV----AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 328 (470)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (470)
..|++++ |+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++
T Consensus 258 --------------~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~----- 318 (656)
T PRK15174 258 --------------QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP----- 318 (656)
T ss_pred --------------HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----
Confidence 5777774 78888888888888888888888888888888888888888888877754
Q ss_pred HHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhh
Q 012143 329 VAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAG 406 (470)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 406 (470)
.++..+|.++...|++++|+..+.+.+. |.....+..
T Consensus 319 -----------------------------------------~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 319 -----------------------------------------YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred -----------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 3556677788888899999988888664 333344555
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 407 ESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 407 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+|.++...|++++|+..|+++++.+|++. ...+++|+..|.++++..
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhc
Confidence 67888888999999999999999888874 234456666666666655
No 10
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-32 Score=231.79 Aligned_cols=361 Identities=15% Similarity=0.092 Sum_probs=279.2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 88 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 88 (470)
.++|+.+++.|++++|| ..|..+|++.|+.+.-|.+++.+ +...|+|++.++...++++++|+...+++.++..+-..
T Consensus 119 K~~GN~~f~~kkY~eAI-kyY~~AI~l~p~epiFYsNraAc-Y~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAI-KYYTQAIELCPDEPIFYSNRAAC-YESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHH-HHHHHHHhcCCCCchhhhhHHHH-HHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 45799999999999999 99999999999998888999999 99999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHH------------------HHHHHh--------hhhcccchhhhHH-----------------------
Q 012143 89 GQPLKAVSSYEK------------------AEEILL--------RCEADIARPELLS----------------------- 119 (470)
Q Consensus 89 g~~~~A~~~~~~------------------al~~~~--------~~~~~~~~~~~~~----------------------- 119 (470)
|++++|+....- .+..-. .....+..|....
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 999988754321 111100 0000000000000
Q ss_pred ------HHHHh-----------------------------------hhccccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 120 ------LVQIH-----------------------------------HAQCLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 120 ------~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
....+ ..++.++...|-. ++-.|+.-.|...|+.+
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF----~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF----HFLKGDSLGAQEDFDAA 352 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh----hhhcCCchhhhhhHHHH
Confidence 00000 0011222222222 55667788888899999
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
+.++|.++..|..+|.+|...++.++-...|.++..++|+++++|+..|++++-++++++|+..|++++.++|++..++.
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 99999888888899999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.++.+.+ +.++++++...|+.+++..|+.++++...|.++..++++++|++.|++++.+
T Consensus 433 Ql~~a~Y---------------------r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 433 QLCCALY---------------------RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHH---------------------HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888777 6778999999999999999999999999999999999999999999999998
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
.|.....+.+.+ .+...+.+
T Consensus 492 E~~~~~~~v~~~----------------------------------------plV~Ka~l-------------------- 511 (606)
T KOG0547|consen 492 EPREHLIIVNAA----------------------------------------PLVHKALL-------------------- 511 (606)
T ss_pred ccccccccccch----------------------------------------hhhhhhHh--------------------
Confidence 888332222111 01111111
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
++.-.+++..|+..+.+|++++|.+..++..||.+..++|+.++|+++|++++.+..+
T Consensus 512 -----------~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 512 -----------VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred -----------hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 1111367788888899999999988888999999999999999999999988877643
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-31 Score=246.96 Aligned_cols=447 Identities=15% Similarity=0.149 Sum_probs=289.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcc-hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADG-DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
+...+..|+|..++ ..|.+++.++|.... .....|.+ +...+..+.|+..|.++++++|.++.++..||.+-....+
T Consensus 171 A~i~ynkkdY~~al-~yyk~al~inp~~~aD~rIgig~C-f~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d 248 (1018)
T KOG2002|consen 171 ARIAYNKKDYRGAL-KYYKKALRINPACKADVRIGIGHC-FWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFND 248 (1018)
T ss_pred HHHHhccccHHHHH-HHHHHHHhcCcccCCCccchhhhH-HHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccc
Confidence 33445555555555 555555555554322 33444555 5555555555555555555555555555555555444332
Q ss_pred ---hhHHHHHHHHHHHHHhhhhcccc-----------hhhhHHHH-------HHhhhccccccccCCCccccccCcccHH
Q 012143 91 ---PLKAVSSYEKAEEILLRCEADIA-----------RPELLSLV-------QIHHAQCLLPESSGDNSLDKELEPEELE 149 (470)
Q Consensus 91 ---~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
+..++..+.++...+|.++.... .+..+.++ ..-...+..++.+|+. +..+|+|+
T Consensus 249 ~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs----~Ha~Gd~e 324 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS----YHAQGDFE 324 (1018)
T ss_pred hHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHhhccHH
Confidence 34455555555554443321110 00000000 0000112223334444 67888999
Q ss_pred HHHHHHHHhhhcCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC----CHHHHHHHHH
Q 012143 150 EILSKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAKCFQ 224 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~ 224 (470)
+|..+|.+++..+|++ .-.++.+|..++..|+++.|+.+|+++++..|++..+...+|.+|...+ ..+.|..+..
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999999988 7788999999999999999999999999999999999999999998886 6789999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhccc--------c---------cccccchhhhhHHHhcCCHHHHHHHHHHHHhc---
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSV--------L---------AGAGANTGEGACLDQASAVNVAKECLLAALKA--- 284 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--- 284 (470)
++++..|.+..+|..++.++....... . ..+....++|..++..|++.+|...|.+++..
T Consensus 405 K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 999999999999999998887541110 0 13556666888888888888888888888766
Q ss_pred --CCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH-H-----------HHHHhhhccCchH
Q 012143 285 --DPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV-S-----------RIKDAERSQEPTE 345 (470)
Q Consensus 285 --~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~-~-----------~~~~~~~~~~~~~ 345 (470)
+++ +....+++|.++...++++.|...|+.++...|...+++..++. . .+.+.........
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence 122 23357888888888888888888888888888888887776652 1 1112221111111
Q ss_pred HhhhhH--------------HHHHHHhhcCCCCCCCcHHHHHHHHHHHh------------ccccHHHHHHHHHHHhcch
Q 012143 346 QLSWAG--------------NEMASILREGDPVQIEPPIAWAGFAAVQK------------THHEVAAAFETEENELSKM 399 (470)
Q Consensus 346 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~ 399 (470)
.....+ ..+...+..... ..++.+...+|+++. ..+.+++|++.|.+.+...
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~--~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTST--KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhcc--CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 111100 011111111111 134556667777653 3345678888888766644
Q ss_pred --hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 400 --EECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 400 --~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+..+-.++|.++...|++.+|+..|.++.+.-.+++++|.++|.||..+|+|..|++.|+.+++.+-
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444568888888888888888888888877777788888888888888888888888888887764
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.4e-30 Score=249.87 Aligned_cols=324 Identities=14% Similarity=0.039 Sum_probs=281.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-|......|++++|+ ..++++++.+|++...+..+|.. +...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 82 l~~~~l~~g~~~~A~-~~l~~~l~~~P~~~~a~~~la~~-l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 82 WVISPLASSQPDAVL-QVVNKLLAVNVCQPEDVLLVASV-LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred HhhhHhhcCCHHHHH-HHHHHHHHhCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 345566789999999 99999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc-cchHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVW 169 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~ 169 (470)
+++|+..+++++...|.+.. .. ..... ++..|++++|+..+++++..+| ......
T Consensus 160 ~~eA~~~~~~~~~~~P~~~~------a~------~~~~~------------l~~~g~~~eA~~~~~~~l~~~~~~~~~~~ 215 (656)
T PRK15174 160 ELQAISLARTQAQEVPPRGD------MI------ATCLS------------FLNKSRLPEDHDLARALLPFFALERQESA 215 (656)
T ss_pred hHHHHHHHHHHHHhCCCCHH------HH------HHHHH------------HHHcCCHHHHHHHHHHHHhcCCCcchhHH
Confidence 99999999999988776421 11 11111 3466888999999999999876 334455
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ----SAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
..++.++...|++++|+..|++++..+|+++.++..+|.++...|++++ |+..|++++..+|++..++..+|.++.
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 6678899999999999999999999999999999999999999999996 899999999999999999999998888
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
..|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++..
T Consensus 296 ---------------------~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~- 353 (656)
T PRK15174 296 ---------------------RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK- 353 (656)
T ss_pred ---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH-
Confidence 7999999999999999999999999999999999999999999999999999987432
Q ss_pred HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHh
Q 012143 326 RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGA 405 (470)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 405 (470)
.+..+|.++...|++++|+..|.+.+...+...
T Consensus 354 ---------------------------------------------~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-- 386 (656)
T PRK15174 354 ---------------------------------------------WNRYAAAALLQAGKTSEAESVFEHYIQARASHL-- 386 (656)
T ss_pred ---------------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--
Confidence 334457778889999999999999776544432
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCcHHH
Q 012143 406 GESAFLDQASAVNVAKECLLAALKADPKAAHI 437 (470)
Q Consensus 406 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 437 (470)
...+++|+..+.++++..+....-
T Consensus 387 --------~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 387 --------PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred --------hhhHHHHHHHHHHHHHhcCCccch
Confidence 345678999999999876655444
No 13
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.98 E-value=4.1e-29 Score=246.57 Aligned_cols=406 Identities=10% Similarity=-0.037 Sum_probs=306.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhH
Q 012143 14 KINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLK 93 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 93 (470)
...-.|+..+++ ..+.+++..+|....++..+|.. +...|++++|...++++++.+|.++.++..+|.++...|++++
T Consensus 24 ia~~~g~~~~A~-~~~~~~~~~~~~~a~~~~~lA~~-~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVI-TVYNRYRVHMQLPARGYAAVAVA-YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 345678899998 88888888888888889999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 173 (470)
|+..++++++..|++. . +..++.+ +...|++++|+..+++++...|+++.++..++
T Consensus 102 A~~~l~~~l~~~P~~~------~-------~~~la~~-----------l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 102 ALVKAKQLVSGAPDKA------N-------LLALAYV-----------YKRAGRHWDELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred HHHHHHHHHHhCCCCH------H-------HHHHHHH-----------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999877642 1 2233333 34567779999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHhhCCCChHHHHHH
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPNNCD-----CIGNLGIAYF-----QSGDM---EQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
.++...|..++|+..++++.. .|.... ....+..+.. ..+++ ++|++.++++++..|.++.....+
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 999999999999999988776 554311 2222222222 22334 789999999997755554432221
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-HIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
....... ++.+ ...|++++|+..|+++++..|..+ .+...+|.++...|++++|+..|+++++.+
T Consensus 237 ~~a~~d~-------------l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 237 QRARIDR-------------LGAL-LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred HHHHHHH-------------HHHH-HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 1111100 1111 257999999999999998864422 244446999999999999999999999988
Q ss_pred CCccc----HHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcC---------CCCCCCc--HHHHHHHHHHHhcccc
Q 012143 320 PNCMS----TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG---------DPVQIEP--PIAWAGFAAVQKTHHE 384 (470)
Q Consensus 320 p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~l~~~~~~~~~ 384 (470)
|.+.. ....+....+ .. ..+..+...+....... ....|++ ..++..++.++...|+
T Consensus 303 p~~~~~~~~~~~~L~~a~~-----~~---g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 303 ETIADLSDEELADLFYSLL-----ES---ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred CCCCCCChHHHHHHHHHHH-----hc---ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 87622 2222222111 11 11222222222222221 1112232 4577889999999999
Q ss_pred HHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012143 385 VAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462 (470)
Q Consensus 385 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 462 (470)
+++|+..+.+.+. |.....+..+|.++...|++++|+..++++++++|+++.+++.+|.++...|++++|...+++++
T Consensus 375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999554 77778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccC
Q 012143 463 MVYCSS 468 (470)
Q Consensus 463 ~~~~~~ 468 (470)
+..|.+
T Consensus 455 ~~~Pd~ 460 (765)
T PRK10049 455 AREPQD 460 (765)
T ss_pred HhCCCC
Confidence 998865
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.7e-28 Score=225.03 Aligned_cols=395 Identities=15% Similarity=0.159 Sum_probs=324.7
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 22 RSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 22 ~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
+.+. ..|..++...|++...++..+.+ .+..++|..|..+|++++..+|.. ++....+|.|+.+.|+.+.|+..|.+
T Consensus 147 ~~A~-a~F~~Vl~~sp~Nil~LlGkA~i-~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 147 DDAD-AQFHFVLKQSPDNILALLGKARI-AYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHH-HHHHHHHhhCCcchHHHHHHHHH-HhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 6676 78999999999999999999999 999999999999999999999975 57888999999999999999999999
Q ss_pred HHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC
Q 012143 101 AEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180 (470)
Q Consensus 101 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 180 (470)
+++++|..- .+..+++.+-.. ......+..++..+.++...+|.+|.++..++.-++..|
T Consensus 225 alqLdp~~v------------~alv~L~~~~l~--------~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 225 ALQLDPTCV------------SALVALGEVDLN--------FNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHhcChhhH------------HHHHHHHHHHHH--------ccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence 999987542 222222222111 123356789999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhhhcccccccc
Q 012143 181 RLQSSISVLSSLLAVDP---NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAG 256 (470)
Q Consensus 181 ~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~ 256 (470)
+|..+......++.... .-.+.++.+|.+|..+|++++|..+|.+++..+|++ .-.++.+|..++
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i----------- 353 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI----------- 353 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-----------
Confidence 99999999999988653 335679999999999999999999999999999988 555666666666
Q ss_pred cchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHhcCCCcccHHHHHHHH
Q 012143 257 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG----DHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
..|+++.|+.+|+++++..|++..+...+|.+|...+ ..+.|..+..+++...|.+..+|..++..
T Consensus 354 ----------~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 354 ----------KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred ----------HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 8999999999999999999999999999999998886 67899999999999999999999887764
Q ss_pred HHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc----hhh-------
Q 012143 333 RIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK----MEE------- 401 (470)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~------- 401 (470)
.... ........+..+...+.. .... -.+.+..++|..++..|.+.+|...+..++.. .+.
T Consensus 424 ~e~~--d~~~sL~~~~~A~d~L~~---~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 424 LEQT--DPWASLDAYGNALDILES---KGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHhc--ChHHHHHHHHHHHHHHHH---cCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 3321 111112222222222222 2222 23678999999999999999999999986553 111
Q ss_pred -hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 402 -CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 402 -~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
...|++|.++...++++.|.+.|..++..+|...+++..+|......++..+|...++.++.+-.+
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 247899999999999999999999999999999999999998888899999999999999987654
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=7.6e-28 Score=237.54 Aligned_cols=444 Identities=15% Similarity=0.038 Sum_probs=317.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
+|..+...|++.+|+ ..|+++++++|++...++.++.. +...|++++|+..++++++.+|.|...+..++.+ ++
T Consensus 50 ~a~~~~~~Gd~~~A~-~~l~~Al~~dP~n~~~~~~LA~~-yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~ 123 (987)
T PRK09782 50 KALKAQKNNDEATAI-REFEYIHQQVPDNIPLTLYLAEA-YRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PV 123 (987)
T ss_pred HHHHHHhCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----cc
Confidence 566677779999999 99999999999999999999999 9999999999999999999999999998888777 99
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhH-------HHH---HHhhhc-cccccccCCC------ccccccCcccHHHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELL-------SLV---QIHHAQ-CLLPESSGDN------SLDKELEPEELEEILS 153 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~-------~~~---~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~A~~ 153 (470)
+++|+..|++++..+|++......-... +.. .+...+ -......+.. ....+...|++++|+.
T Consensus 124 ~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 124 EVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred ChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999999999998865432111110 000 000000 0001111110 1334677899999999
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHH-cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 012143 154 KLKESMQSDTRQAVVWNTLGLILLK-SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK--- 229 (470)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--- 229 (470)
.+.++++..|.+...+..++.+|.. +++ +++..+++..++ .++.++..++..|...|+.++|...+++.-..
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 9999999999999989999998888 477 888888665333 77889999999999999999999887764322
Q ss_pred CCCChHHHHHHHHHHHh---------------------------------------------------------------
Q 012143 230 DQNHPAALINYAALLLC--------------------------------------------------------------- 246 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~--------------------------------------------------------------- 246 (470)
+|.+...++.++.....
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 12222222222211111
Q ss_pred ------------------------------------------------------------------hhc---c--c--c-
Q 012143 247 ------------------------------------------------------------------KYG---S--V--L- 252 (470)
Q Consensus 247 ------------------------------------------------------------------~~~---~--~--~- 252 (470)
... . . +
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 000 0 0 0
Q ss_pred ---------------------------------c--ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 253 ---------------------------------A--GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 253 ---------------------------------~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
. ....+..+|.++.. +++.+|+..+.+++...|++. ....+|.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~ 517 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAY 517 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHH
Confidence 0 00112445566655 677788888888888888754 3666677
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHH------------HhhhccCchHHh-------h---hhHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK------------DAERSQEPTEQL-------S---WAGNEMA 355 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~------------~~~~~~~~~~~~-------~---~~~~~~~ 355 (470)
++...|++++|+..|+++....|.+ ..++.++...+. ............ . .......
T Consensus 518 al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 7788899999999998887765553 334433321111 111000000000 0 1122233
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh--cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 012143 356 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 433 (470)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 433 (470)
..+.......|+ +..+..+|.++.+.|++++|+..+.+.+ +|....++..+|.++...|++++|+..|+++++.+|+
T Consensus 597 ~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 597 NDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 333444444555 7899999999999999999999999954 5777788999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 434 AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 434 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
++.+++++|.++..+|++++|+.+|++++++-|.+
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999988754
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2e-29 Score=225.04 Aligned_cols=295 Identities=16% Similarity=0.149 Sum_probs=251.3
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
....-+..+|...|.+.....++...++..+|..|+.+++|++|..+|+.+-+..|-.- ...+..+..-.|
T Consensus 329 ~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv---~~meiyST~LWH------ 399 (638)
T KOG1126|consen 329 SLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV---KGMEIYSTTLWH------ 399 (638)
T ss_pred HHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---cchhHHHHHHHH------
Confidence 45667789999999998888899999999999999999999999999999988865421 112222211111
Q ss_pred ccccCCCccccccCcccHHHHHHH-HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSK-LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
+ .+ +-++.+ .+..+..+|+.|+.|..+|.||..+++++.|+++|+++++++|.+..+|..+|.-
T Consensus 400 ---L-----------q~-~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 400 ---L-----------QD-EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred ---H-----------Hh-hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 1 11 223333 4566788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 012143 210 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 210 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 289 (470)
+....++|.|..+|+.++..+|.+..+|+.+|.+|. ++++++.|.-.|++|++++|.+.
T Consensus 465 ~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~---------------------Kqek~e~Ae~~fqkA~~INP~ns 523 (638)
T KOG1126|consen 465 SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL---------------------KQEKLEFAEFHFQKAVEINPSNS 523 (638)
T ss_pred hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee---------------------ccchhhHHHHHHHhhhcCCccch
Confidence 999999999999999999999999999999999988 79999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcH
Q 012143 290 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 369 (470)
Q Consensus 290 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
.....+|.++.+.|+.++|+..|++|+.++|.++...+..+
T Consensus 524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~--------------------------------------- 564 (638)
T KOG1126|consen 524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA--------------------------------------- 564 (638)
T ss_pred hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH---------------------------------------
Confidence 99999999999999999999999999999999876554332
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 012143 370 IAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 449 (470)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 449 (470)
.++...+++++|+..+++..++.|+...+++.+|.+|.++|
T Consensus 565 ---------------------------------------~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 565 ---------------------------------------SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred ---------------------------------------HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence 26666777888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHhhccC
Q 012143 450 DHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 450 ~~~~A~~~~~~al~~~~~~ 468 (470)
+.+.|+..|.=|+++-|+.
T Consensus 606 ~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 606 NTDLALLHFSWALDLDPKG 624 (638)
T ss_pred cchHHHHhhHHHhcCCCcc
Confidence 8888888888888777653
No 17
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-26 Score=196.99 Aligned_cols=254 Identities=14% Similarity=0.136 Sum_probs=195.0
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
....++++|+..|+.+.+.+|...+-.-...++++-.++-.+-.-.-+.+..++.-.++....+|..|...++.++|+.+
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence 34556677777777777777766555555555555554433333344445555655666666777777777777888888
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
|+++++++|....+|..+|.-+. ..++...|++.|++|++++|.+..+|+.||++|..+
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyv---------------------EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYV---------------------EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHH---------------------HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence 88888888877777777777776 577777788888888888888888888888888888
Q ss_pred CChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcc
Q 012143 303 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 382 (470)
Q Consensus 303 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (470)
+.+.=|+-+|+++....|.+ +.+|..+|.+|.+.
T Consensus 412 ~Mh~YaLyYfqkA~~~kPnD----------------------------------------------sRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELKPND----------------------------------------------SRLWVALGECYEKL 445 (559)
T ss_pred cchHHHHHHHHHHHhcCCCc----------------------------------------------hHHHHHHHHHHHHh
Confidence 87777888888887777774 46899999999999
Q ss_pred ccHHHHHHHHHHHhcch--hhhhHhhHHHHHHHhccHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCChHH
Q 012143 383 HEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAALK-------ADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 383 ~~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
++.++|++.|..++.-. +..+++.+|.+|.+.++.++|..+|++.++ ..|+...+...|+.-+.+.+++++
T Consensus 446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 99999999999977644 448899999999999999999999999998 456667788889999999999999
Q ss_pred HHHHHHHHHH
Q 012143 454 SGKCLEKVLM 463 (470)
Q Consensus 454 A~~~~~~al~ 463 (470)
|-.+..+++.
T Consensus 526 As~Ya~~~~~ 535 (559)
T KOG1155|consen 526 ASYYATLVLK 535 (559)
T ss_pred HHHHHHHHhc
Confidence 9998877664
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7.1e-28 Score=215.16 Aligned_cols=271 Identities=15% Similarity=0.170 Sum_probs=233.6
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 8 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 8 ~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
...-|+.++++++++++. ..|+.+=...|-.....-....+ ++...+--+.--+-+..+..+|..|+.|..+|.||..
T Consensus 356 l~q~GrayFEl~~Y~~a~-~~F~~~r~~~p~rv~~meiyST~-LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAE-RIFSLVRRIEPYRVKGMEIYSTT-LWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhccccccchhHHHHH-HHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 344566667777777666 66666666666555544444444 4444444444455555678899999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV 167 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 167 (470)
+++++.|+++|++|+.++|.. +.+|..+|.. +.....++.|..+|+.++..+|.+..
T Consensus 434 Qkdh~~Aik~f~RAiQldp~f-------------------aYayTLlGhE----~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRF-------------------AYAYTLLGHE----SIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred hhHHHHHHHHHHHhhccCCcc-------------------chhhhhcCCh----hhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 999999999999999998752 3445555655 67889999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 247 (470)
+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..+.++.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~-- 568 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF-- 568 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
..+++++|+..+++..++.|+...++..+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 569 -------------------~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 569 -------------------SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred -------------------hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 6999999999999999999999999999999999999999999999999999998554
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=2.4e-26 Score=212.57 Aligned_cols=311 Identities=15% Similarity=0.113 Sum_probs=223.3
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
.....+..|.. +...|++++|...|.++++.+|+++.++..+|.++...|++++|+..+++++...+.+
T Consensus 34 ~~~~~y~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---------- 102 (389)
T PRK11788 34 RLSRDYFKGLN-FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT---------- 102 (389)
T ss_pred hccHHHHHHHH-HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC----------
Confidence 45566777888 8899999999999999999999999999999999999999999999998877631000
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
.+....++..+|.+|...|++++|+..|+++++.+|.
T Consensus 103 -------------------------------------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 139 (389)
T PRK11788 103 -------------------------------------------REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF 139 (389)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc
Confidence 0011235666777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
+..++..++.++...|++++|++.+++++...|.+.... .+..+. .+|.++...|++++|+..|
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~--------------~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--IAHFYC--------------ELAQQALARGDLDAARALL 203 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--HHHHHH--------------HHHHHHHhCCCHHHHHHHH
Confidence 777777777777777777777777777777666543210 111111 1233344677777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHh
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 358 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (470)
+++++..|++..++..+|.++...|++++|+..+++++..+|.+.
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------------------------- 248 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----------------------------------- 248 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------------------------
Confidence 777777777777777777777777777777777777777665521
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHH
Q 012143 359 REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAH 436 (470)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 436 (470)
...+..++.++...|++++|+..+.+.+. |.. .....++.++...|++++|+..++++++..|++..
T Consensus 249 ----------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 249 ----------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 12345566667777777777777776443 322 23467888899999999999999999999999886
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHHHhh
Q 012143 437 IWANLANAYYL--TGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 437 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~ 465 (470)
....++..... .|+..+|+..+++.++..
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 66555544422 568999999999888744
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=2e-26 Score=227.54 Aligned_cols=381 Identities=11% Similarity=0.020 Sum_probs=283.2
Q ss_pred CCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 37 VDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
|-+.....-.-.+ ..-.|+.++|+..+.++...+|....++..+|.++...|++++|+..|+++++.+|.+..
T Consensus 12 ~~~~~~~~d~~~i-a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~------ 84 (765)
T PRK10049 12 ALSNNQIADWLQI-ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD------ 84 (765)
T ss_pred CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Confidence 3333333333444 667899999999999999889999999999999999999999999999999999876421
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 196 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 196 (470)
++..++.+ +...|++++|+..+++++...|+++. +..+|.++...|++++|+..++++++..
T Consensus 85 ------a~~~la~~-----------l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 85 ------YQRGLILT-----------LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred ------HHHHHHHH-----------HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12233333 34667789999999999999999999 9999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH-----HHHHHHHHhhhcccccccccchhhhhHHHhcCCH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL-----INYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (470)
|+++.++..++.++...|..++|+..++++.. .|...... ..+..+.. +......+++
T Consensus 147 P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~----------------~~~~~~~~r~ 209 (765)
T PRK10049 147 PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSF----------------MPTRSEKERY 209 (765)
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhc----------------ccccChhHHH
Confidence 99999999999999999999999999998876 65531111 11111111 0111123345
Q ss_pred ---HHHHHHHHHHHhcCCCCHHH-------HHH-HHHHHHHcCChhHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHhhh
Q 012143 272 ---NVAKECLLAALKADPKAAHI-------WAN-LANAYYLTGDHRSSGKCLEKAAKLEPNCMS-TRYAVAVSRIKDAER 339 (470)
Q Consensus 272 ---~~A~~~~~~~~~~~p~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~ 339 (470)
++|+..++.+++..|.++.. ... ++ .+...|++++|+..|+++++..|..+. +...++...+.
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~---- 284 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK---- 284 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh----
Confidence 78999999999764443322 222 33 346789999999999999988644332 12222221111
Q ss_pred ccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh-----------------hh
Q 012143 340 SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME-----------------EC 402 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~ 402 (470)
... ...+...+...+................++.++...|++++|+..+.......+ ..
T Consensus 285 -~g~---~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 285 -LHQ---PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred -cCC---cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 111 223333333333322111111235677788888999999999999988655322 23
Q ss_pred hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 403 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 403 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+...+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++++.|..
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 567889999999999999999999999999999999999999999999999999999999998764
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.2e-24 Score=215.06 Aligned_cols=395 Identities=11% Similarity=0.008 Sum_probs=298.0
Q ss_pred HHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhc
Q 012143 31 SALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEA 110 (470)
Q Consensus 31 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 110 (470)
+.+.+.|.+.. ..+........+...++...+....+..|.+..++..++......|++++|...|+++... +.+..
T Consensus 334 ~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 410 (987)
T PRK09782 334 KLLATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDAR 410 (987)
T ss_pred HHhcCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-Ccccc
Confidence 44667776663 2222221445588888888888888888999999999999999999999999999999875 22211
Q ss_pred ccchhhhH-HHHHHhhhcccccc-----ccCCC--ccccccCcccHHH---HHHHHHHhhhcCcc--chHHHHHHHHHHH
Q 012143 111 DIARPELL-SLVQIHHAQCLLPE-----SSGDN--SLDKELEPEELEE---ILSKLKESMQSDTR--QAVVWNTLGLILL 177 (470)
Q Consensus 111 ~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~---A~~~~~~~~~~~p~--~~~~~~~l~~~~~ 177 (470)
. .+... .++.++.....+.. .++.. ......-.|++.+ +...+.+++...|. ++.+++.+|.++.
T Consensus 411 ~--~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 411 L--SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred c--CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 1 11111 22222222211000 00000 0000112344433 55566666777777 8999999999998
Q ss_pred HcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccccccc
Q 012143 178 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGA 257 (470)
Q Consensus 178 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (470)
. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.+ ..+..++.++.
T Consensus 489 ~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all------------ 553 (987)
T PRK09782 489 D-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQ------------ 553 (987)
T ss_pred h-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHH------------
Confidence 7 899999999999999999754 46677888889999999999999987775554 45666676666
Q ss_pred chhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHh
Q 012143 258 NTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 337 (470)
Q Consensus 258 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 337 (470)
..|++++|+.+|+++++.+|+....+..++......|++++|+..|+++++.+|+ ...+.+++.....
T Consensus 554 ---------~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~-- 621 (987)
T PRK09782 554 ---------AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ-- 621 (987)
T ss_pred ---------HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH--
Confidence 6899999999999999999998888887777777889999999999999999996 6677666653322
Q ss_pred hhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhc
Q 012143 338 ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQAS 415 (470)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 415 (470)
. .. ..+....+.......|+++.++.++|.++...|++++|+..+.+++. |....+++.+|.++...|
T Consensus 622 ---l---G~----~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 622 ---R---HN----VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred ---C---CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 1 11 11222334444445677889999999999999999999999999654 777788999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 416 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 416 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
++++|+..|+++++++|+++.+....|.+.....+++.|.+.++++..+-+.
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999999999999999999877654
No 22
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=9.7e-26 Score=185.54 Aligned_cols=217 Identities=14% Similarity=0.146 Sum_probs=186.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-|+.+..-|.+..|+ +.|-.+++.+|++..+++..|.+ ++..|+-..|...+.+++++.|+...+....|.+++++|+
T Consensus 44 lGk~lla~~Q~sDAL-t~yHaAve~dp~~Y~aifrRaT~-yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDAL-THYHAAVEGDPNNYQAIFRRATV-YLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHH-HHHHHHHcCCchhHHHHHHHHHH-HhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 488888999999999 99999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 170 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 170 (470)
+++|...|+..+..+|++........-+..+.-+..+-. .+..++..|+...|+.+....+++.|.++..+.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~--------ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQ--------QLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHH--------HHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 999999999999998865433222221111111111100 011135678889999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
..+.||...|++..|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987654
No 23
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-24 Score=188.88 Aligned_cols=429 Identities=14% Similarity=0.105 Sum_probs=314.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHH
Q 012143 19 GKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSY 98 (470)
Q Consensus 19 g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 98 (470)
-++..|. -.-++...+. .++..-+.++++ +.-.+++.+|...++.- .+...+....+..+.++....++++|...+
T Consensus 30 ~~y~~a~-f~adkV~~l~-~dp~d~~~~aq~-l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl 105 (611)
T KOG1173|consen 30 HRYKTAL-FWADKVAGLT-NDPADIYWLAQV-LYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVL 105 (611)
T ss_pred HhhhHHH-HHHHHHHhcc-CChHHHHHHHHH-HHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 3444554444 566677889999 99999999998888765 566778889999999999999999999998
Q ss_pred HHH------HHHHhhhhcccchhhh-HHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHH
Q 012143 99 EKA------EEILLRCEADIARPEL-LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 171 (470)
Q Consensus 99 ~~a------l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 171 (470)
.+. +.-.|.+.......+. ..... ....+.+....|.. +....++++|...|.+++..++.+.++...
T Consensus 106 ~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~-~~~essic~lRgk~----y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~ 180 (611)
T KOG1173|consen 106 GRGHVETNPFSYYEKDAANTLELNSAGEDLM-INLESSICYLRGKV----YVALDNREEARDKYKEALLADAKCFEAFEK 180 (611)
T ss_pred cccchhhcchhhcchhhhceeccCccccccc-ccchhceeeeeeeh----hhhhccHHHHHHHHHHHHhcchhhHHHHHH
Confidence 844 1111111000000000 00000 01112222333443 667777899999999999999888776655
Q ss_pred HHHHHHHcC-----------------ChHHHHHHHHHHh----------hcCC--------CChHHHHHHHHHHHHcCCH
Q 012143 172 LGLILLKSG-----------------RLQSSISVLSSLL----------AVDP--------NNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 172 l~~~~~~~~-----------------~~~~A~~~~~~a~----------~~~~--------~~~~~~~~la~~~~~~g~~ 216 (470)
+-...+-.- ...+=++.+-++. ...| ++++.....+..++..+++
T Consensus 181 lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f 260 (611)
T KOG1173|consen 181 LVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRF 260 (611)
T ss_pred HHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChH
Confidence 543332221 1111111111111 0122 3567888889999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc-------------cccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGS-------------VLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
.+..+..+..++.+|-+...+-....++....+. ....+-.|+..|..|...|++.+|..+|.++..
T Consensus 261 ~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 261 KECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred HHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 9999999999999998877654333344332211 222577889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCC
Q 012143 284 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP 363 (470)
Q Consensus 284 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (470)
++|....+|...|..+...|..++|+.+|..|-++.|........+++....- ...+-....+.....
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t------------~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT------------NNLKLAEKFFKQALA 408 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh------------ccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888777776643321 112223455666777
Q ss_pred CCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh---------hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 364 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME---------ECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 364 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
+.|.+|.+...+|.+....+.+.+|...|+..+.+.. ...+.++|.++.+.+++++|+.+|++++.+.|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 7889999999999999999999999999999773221 2337799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 435 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 435 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+.++..+|.+|..+|+++.|+++|.|++-+-|..
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999887643
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=2.8e-23 Score=201.28 Aligned_cols=407 Identities=10% Similarity=-0.043 Sum_probs=266.0
Q ss_pred HHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc
Q 012143 32 ALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEAD 111 (470)
Q Consensus 32 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 111 (470)
.+-..|..+...+..+.+ ..+.|++..|...|+++++.+|.++.+...+..++...|+.++|+.++++++ +|.+...
T Consensus 26 ~~~~~p~~~~~~y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~ 102 (822)
T PRK14574 26 GFVVNPAMADTQYDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISS 102 (822)
T ss_pred ccccCccchhHHHHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCH
Confidence 344556666666677776 7777777777777777777777765443366666666677777777777766 2222110
Q ss_pred cchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHH
Q 012143 112 IARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 191 (470)
.. ...++.+ +...|++++|++.|+++++.+|+++.++..++.++...++.++|+..+++
T Consensus 103 ---~~-------llalA~l-----------y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 103 ---RG-------LASAARA-----------YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred ---HH-------HHHHHHH-----------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 00 0111111 23446667777777777777777777776666777777777777777777
Q ss_pred HhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc------------------
Q 012143 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA------------------ 253 (470)
Q Consensus 192 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~------------------ 253 (470)
+...+|.+... ..++.++...++..+|++.++++++.+|++...+..+..++........+
T Consensus 162 l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 162 LAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred hcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 77776664443 44455555556665577777777777777766665555544432111000
Q ss_pred --------------------------------c-----------cc--cc-----hhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 254 --------------------------------G-----------AG--AN-----TGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 254 --------------------------------~-----------~~--~~-----~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
. +. .. ...-..+...|++.++++.|+....
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 0 00 00 0112345567888999999988775
Q ss_pred cC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc----ccH--HHHHHHHHHHHhhhccCchHHhhhhHHHHHH
Q 012143 284 AD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC----MST--RYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 356 (470)
Q Consensus 284 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
.. |--..+....|..|...+++++|...|+.++...|.. ... ...+....+. .+..+........+..
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld-----~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE-----SEQLDKAYQFAVNYSE 395 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh-----cccHHHHHHHHHHHHh
Confidence 54 3345677888999999999999999999998866421 111 1222222221 1111122222222222
Q ss_pred Hhh--------cCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHH
Q 012143 357 ILR--------EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLA 426 (470)
Q Consensus 357 ~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 426 (470)
..+ ......++-......++.++...|++.+|.+.++..+. |.+...+..+|.++...|.+.+|...++.
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111 01122345566778889999999999999999999555 66777788999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 427 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 427 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+..++|++..+...+|.++..+|++++|....+++++.+|.+
T Consensus 476 a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 476 VESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 999999999999999999999999999999999999998864
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.4e-24 Score=200.82 Aligned_cols=276 Identities=14% Similarity=0.061 Sum_probs=233.2
Q ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC----hhHHH
Q 012143 4 EMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN----AHAHF 79 (470)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~ 79 (470)
+.+.....|..+...|++++|+ ..+.++++.+|++...+..+|.. +...|++++|...+++++...+.. ..++.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAI-DLFIEMLKVDPETVELHLALGNL-FRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHH-HHHHHHHhcCcccHHHHHHHHHH-HHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3344445677788889999999 99999999999999999999999 999999999999999998754332 35788
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhh
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 159 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 159 (470)
.+|.+|...|++++|+..|+++++..|... .++..++.+ +...|++++|+..+++++
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~------------~~~~~la~~-----------~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAE------------GALQQLLEI-----------YQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchH------------HHHHHHHHH-----------HHHhchHHHHHHHHHHHH
Confidence 999999999999999999999998644321 122223332 346788899999999999
Q ss_pred hcCccch-----HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 160 QSDTRQA-----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 160 ~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
...|.+. ..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.+++++..+|.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 9887653 35668999999999999999999999999999999999999999999999999999999999888763
Q ss_pred -HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 012143 235 -AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 313 (470)
Q Consensus 235 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 313 (470)
..+..++.++. ..|++++|+..++++++..|+... +..++.++...|++++|+..++
T Consensus 249 ~~~~~~l~~~~~---------------------~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 249 SEVLPKLMECYQ---------------------ALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHH
Confidence 34555555555 799999999999999999998654 4899999999999999999999
Q ss_pred HHHhcCCCcccHH
Q 012143 314 KAAKLEPNCMSTR 326 (470)
Q Consensus 314 ~a~~~~p~~~~~~ 326 (470)
++++..|++....
T Consensus 307 ~~l~~~P~~~~~~ 319 (389)
T PRK11788 307 EQLRRHPSLRGFH 319 (389)
T ss_pred HHHHhCcCHHHHH
Confidence 9999999976544
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-23 Score=177.63 Aligned_cols=318 Identities=15% Similarity=0.134 Sum_probs=261.2
Q ss_pred CCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHH
Q 012143 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 151 (470)
Q Consensus 72 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 151 (470)
..++..++..|.++.+.|....|+..|..++...|- ++ .+|..++. .-.-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~---------~W---~AWleL~~------------------lit~ 210 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW---------FW---SAWLELSE------------------LITD 210 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc---------ch---HHHHHHHH------------------hhch
Confidence 456778899999999999999999999999876432 22 22322222 2233
Q ss_pred HHHHHHhhhcCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 152 LSKLKESMQSDT--RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 152 ~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
+.........-| .+.-.-+.++.++....+.++++.-++..... -|.++-.-...|.+...+.++++|+..|+...+
T Consensus 211 ~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k 290 (559)
T KOG1155|consen 211 IEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK 290 (559)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 344444444444 33344456788888888999999999998888 888888999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHhhhcccc-c------------ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 229 KDQNHPAALINYAALLLCKYGSVL-A------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
.+|-..+-...+..++..+.+... . .++..-.+|..|.-.++.++|+.+|+++++++|....+|..+
T Consensus 291 nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLm 370 (559)
T KOG1155|consen 291 NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLM 370 (559)
T ss_pred cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHh
Confidence 999776666666666554433211 1 245555689999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHH
Q 012143 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 375 (470)
Q Consensus 296 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 375 (470)
|.-|..+++...|+..|++|++++|.+. .+|+.+
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi~p~Dy----------------------------------------------RAWYGL 404 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDINPRDY----------------------------------------------RAWYGL 404 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhcCchhH----------------------------------------------HHHhhh
Confidence 9999999999999999999999999864 467777
Q ss_pred HHHHhccccHHHHHHHHHHH--hcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 012143 376 AAVQKTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
|+.|.-++...=|+-.|+++ +.|.+...|..+|.||.+.++.++|+.+|.+++.....+..++..||.+|..+++.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 88888888888888888884 5588899999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 012143 454 SGKCLEKVLMVY 465 (470)
Q Consensus 454 A~~~~~~al~~~ 465 (470)
|..+|++.++..
T Consensus 485 Aa~~yek~v~~~ 496 (559)
T KOG1155|consen 485 AAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999999865
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.94 E-value=1.5e-23 Score=193.44 Aligned_cols=343 Identities=15% Similarity=0.123 Sum_probs=253.2
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHH
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 121 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 121 (470)
.....+.. +...|++++|...+.++++.+|.++.+|+.||.+|.++|+.+++...+-.|-.
T Consensus 141 ~ll~eAN~-lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------ 201 (895)
T KOG2076|consen 141 QLLGEANN-LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------ 201 (895)
T ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------
Confidence 34455555 66668888888888888888888888888888888888877777766655544
Q ss_pred HHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH
Q 012143 122 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
++|.+.+.|..++....++|++.+|.-+|.++++.+|.+..
T Consensus 202 ---------------------------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~ 242 (895)
T KOG2076|consen 202 ---------------------------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE 242 (895)
T ss_pred ---------------------------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH
Confidence 36778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
.....+.+|.++|+...|...|.+++...|... .-.....+.. .+..+...++-+.|++.++.+
T Consensus 243 ~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d-~er~~d~i~~---------------~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 243 LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD-IERIEDLIRR---------------VAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh-HHHHHHHHHH---------------HHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999998322 1111222221 234445677779999999999
Q ss_pred HhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--CCcccH--------------------HHHHHHHHHHHh
Q 012143 282 LKADP--KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE--PNCMST--------------------RYAVAVSRIKDA 337 (470)
Q Consensus 282 ~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~--------------------~~~l~~~~~~~~ 337 (470)
+.... ...+.+..++.++.....++.|........... +++... -+.+-..++.-.
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 98432 345667788999999999999988877665511 111000 000000011000
Q ss_pred hhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh---hhhHhhHHHHHHHh
Q 012143 338 ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME---ECAGAGESAFLDQA 414 (470)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~ 414 (470)
.-..+.. .....+...+........+.+..+..++..+...|++.+|+..+....+... ...|+.+|.||...
T Consensus 387 L~~L~~~----e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 387 LVHLKER----ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhccccc----chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 0000000 1112222333333333446778999999999999999999999998666332 34799999999999
Q ss_pred ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012143 415 SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462 (470)
Q Consensus 415 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 462 (470)
|.+++|+.+|++++...|++.++...|+.++.++|+.++|.+.++...
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999887644
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.5e-24 Score=184.37 Aligned_cols=348 Identities=15% Similarity=0.076 Sum_probs=255.9
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHH
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 121 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 121 (470)
.+-..|.- ++..|+|++|+++|..++++.|+.+..+-+++-||...|++++-++.-.++++++|+..
T Consensus 117 ~lK~~GN~-~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~------------ 183 (606)
T KOG0547|consen 117 ALKTKGNK-FFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV------------ 183 (606)
T ss_pred HHHhhhhh-hhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH------------
Confidence 34567888 99999999999999999999999999999999999999999999999999999987642
Q ss_pred HHhhhccccccccCCC-----ccccccCcccH--------------HHHHHHHHHhhh--cCccchH-------------
Q 012143 122 QIHHAQCLLPESSGDN-----SLDKELEPEEL--------------EEILSKLKESMQ--SDTRQAV------------- 167 (470)
Q Consensus 122 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------------~~A~~~~~~~~~--~~p~~~~------------- 167 (470)
.+++..+.++..+|+. .+....-.|.| ..|.....+-+. ..|.-|.
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 3333344333333332 00000000000 011111111122 1111111
Q ss_pred --------------HHHHHHHHHHHcC---ChHHHHHHHHHHhhcCC----CC---------hHHHHHHHHHHHHcCCHH
Q 012143 168 --------------VWNTLGLILLKSG---RLQSSISVLSSLLAVDP----NN---------CDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 168 --------------~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~----~~---------~~~~~~la~~~~~~g~~~ 217 (470)
+-..-+.-....+ .|..|...+.+.....- .+ ..++...|..++-.|++-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 1111111112222 56667666666543311 11 567888999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 218 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
.|.+.|+.++.++|.+...+..++.+|. ...+.++-...|.++..++|+++++|+..|+
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~---------------------d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYA---------------------DENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHh---------------------hhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 9999999999999999988888888887 6888899999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 377 (470)
+++-++++++|+.-|++++.++|.+..++..++.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~---------------------------------------------- 436 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC---------------------------------------------- 436 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999998887775544
Q ss_pred HHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHH-HHc
Q 012143 378 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK------AAHIWANLANAY-YLT 448 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~-~~~ 448 (470)
+..++++++++...|..... |..++.+...|.++...++|++|++.|.+++++.|. ++..+.+.|.+. .-.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk 516 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh
Confidence 33444567777777777555 555577778888999999999999999999999998 666666666654 335
Q ss_pred CChHHHHHHHHHHHHhhccCC
Q 012143 449 GDHRSSGKCLEKVLMVYCSSN 469 (470)
Q Consensus 449 g~~~~A~~~~~~al~~~~~~~ 469 (470)
+++..|+..+++|+++-|.++
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred hhHHHHHHHHHHHHccCchHH
Confidence 999999999999999988764
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=6e-22 Score=176.53 Aligned_cols=432 Identities=13% Similarity=0.077 Sum_probs=343.0
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHH
Q 012143 17 KLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 96 (470)
Q Consensus 17 ~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 96 (470)
++...+.+. -.+.+++++-|.+...|..++.. .-|+.|.+.+.++-+.-|.++.+|..-+.+--..|+.+.-..
T Consensus 388 elE~~~dar-ilL~rAveccp~s~dLwlAlarL-----etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 388 ELEEPEDAR-ILLERAVECCPQSMDLWLALARL-----ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred hccChHHHH-HHHHHHHHhccchHHHHHHHHHH-----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 344455555 68899999999999888877766 678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccchhhhHHHHHHhhhcc-------ccccc--cCCC----------ccccccCcccHHHHHHHHHH
Q 012143 97 SYEKAEEILLRCEADIARPELLSLVQIHHAQC-------LLPES--SGDN----------SLDKELEPEELEEILSKLKE 157 (470)
Q Consensus 97 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~~----------~~~~~~~~~~~~~A~~~~~~ 157 (470)
...+++.....+...+.+..++..+..+..-+ .++.. +|.. ..+...+.+.++-|+.+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 99998876555544444444444333322111 11111 1111 11234466778889999999
Q ss_pred hhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 158 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 158 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+++.+|....+|...+..-...|..++-...+++++...|.....|...+..+...|+...|...+.++++.+|++.+.|
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIW 621 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhhhc------------ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 012143 238 INYAALLLCKYG------------SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305 (470)
Q Consensus 238 ~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 305 (470)
..-..+.....+ ........++..+.+..-+++.++|+.+++++++..|+....|..+|+++..+++.
T Consensus 622 laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence 765554443211 11113455666777778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccH
Q 012143 306 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEV 385 (470)
Q Consensus 306 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (470)
+.|...|...++..|..+..|..++.. .+.. ......+..+..+....|.+...|.....+..+.|+.
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakl--eEk~----------~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKL--EEKD----------GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHH--HHHh----------cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 999999999999999999988876542 2111 1122344555666666778888999999999999999
Q ss_pred HHHHHHHHHHhcch--------------------------------hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 012143 386 AAAFETEENELSKM--------------------------------EECAGAGESAFLDQASAVNVAKECLLAALKADPK 433 (470)
Q Consensus 386 ~~A~~~~~~~~~~~--------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 433 (470)
+.|.....++++.. ++..+..+|..+....++++|.++|.+++..+|+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 88888877766532 2244557888888999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 434 AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 434 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+.++|..+-..+...|.-++-.+.|.+...--|
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 999999999999999998888888887765444
No 30
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-22 Score=177.04 Aligned_cols=410 Identities=14% Similarity=0.051 Sum_probs=242.5
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 8 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 8 ~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
.-..|+..+..|++..++ ..|..+|.++|.+--.+.+...+ +...|+|++|.+.-.+.++++|+.+..|..+|..+.-
T Consensus 5 ~k~kgnaa~s~~d~~~ai-~~~t~ai~l~p~nhvlySnrsaa-~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAI-RLFTEAIMLSPTNHVLYSNRSAA-YASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred HHHHHHhhcccccHHHHH-HHHHHHHccCCCccchhcchHHH-HHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 345688899999999999 99999999999988888899999 9999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhc---------cccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ---------CLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
.|+|++|+..|.+.|+.+|++..... .+..++... ..++..+... ...+.--.+.+.....+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~-----gl~~a~~~~~~~~~~~~~p~~~~~l~~~---p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKT-----GLAQAYLEDYAADQLFTKPYFHEKLANL---PLTNYSLSDPAYVKILEI 154 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHH-----hHHHhhhHHHHhhhhccCcHHHHHhhcC---hhhhhhhccHHHHHHHHH
Confidence 99999999999999999988743211 000111000 0000000000 000000001122222222
Q ss_pred hhcCccchHHHHH-------HHHHHHHcCChHHHHHHHHHHhh-----cCCC---------------------ChHHHHH
Q 012143 159 MQSDTRQAVVWNT-------LGLILLKSGRLQSSISVLSSLLA-----VDPN---------------------NCDCIGN 205 (470)
Q Consensus 159 ~~~~p~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~a~~-----~~~~---------------------~~~~~~~ 205 (470)
++.+|.+...+.+ +|.+... +.. ..+..... ..|. -......
T Consensus 155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~-~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPRLMKADGQLKGV-DEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred hhcCcHhhhcccccHHHHHHHHHHhcC-ccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 3333332221111 1111000 000 00000000 0110 0123455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
+|.......++..|++.|..++.++ .+...+.+.+.++... +....-.+..++|++.-.......
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~--------------~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLER--------------GKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhc--------------cHHHHhhcchHHHHHHhHHHHHHH
Confidence 6666666666666666666666666 5555555555555532 222233333333443333222211
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCC
Q 012143 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 365 (470)
Q Consensus 286 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (470)
..-......+|..|...++++.|+.+|.+++....+ ++.... +....+. .........+.
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls~-----lk~~Ek~--------------~k~~e~~a~~~ 354 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLSK-----LKEAEKA--------------LKEAERKAYIN 354 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHHH-----HHHHHHH--------------HHHHHHHHhhC
Confidence 112233334666677777777777777776654332 110000 0000000 00000011111
Q ss_pred CCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012143 366 IEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN 443 (470)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 443 (470)
|....--..-|..++..|+|..|+..|.+++. |.+...+.+.|.||..++.+..|+...+++++++|+...+|...|.
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 22233344458888888888888888888665 5555667788888888888888888888888888888888888888
Q ss_pred HHHHcCChHHHHHHHHHHHHhhcc
Q 012143 444 AYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 444 ~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
++..+.+|++|.+.|++++++-|+
T Consensus 435 al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCch
Confidence 888888888888888888887664
No 31
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=5.9e-22 Score=180.07 Aligned_cols=420 Identities=15% Similarity=0.094 Sum_probs=312.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhC--CCChhHHHHHHHHHH-HhCC
Q 012143 14 KINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKM--PKNAHAHFLLGLMYQ-RLGQ 90 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~-~~g~ 90 (470)
.+...|.+.... ..|++++......-..|+..+.. +...|.-..|...++..+... |.++..+...+.++. ..|.
T Consensus 332 al~~~g~f~~la-e~fE~~~~~~~~~~e~w~~~als-~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 332 ALSRCGQFEVLA-EQFEQALPFSFGEHERWYQLALS-YSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHH-HHHHHHhHhhhhhHHHHHHHHHH-HHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence 355678888888 89999998888888999999999 999999999999999999888 888887777766655 5789
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 170 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 170 (470)
.++++.+-.+++...-.. .... ....+...|.+|..+.......-.+.....++++.++++++.+|+|+.+.+
T Consensus 410 ~eegldYA~kai~~~~~~-----~~~l--~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if 482 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQ-----RSHL--KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIF 482 (799)
T ss_pred hhhHHHHHHHHHHHhhhh-----hhhh--hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 999999999999853111 1111 123444555555444433222233445567899999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
.++.-|..+++.+.|.+..++++++ ..+++.+|..++.++...+++.+|+...+.++...|+|.........+-.
T Consensus 483 ~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~---- 558 (799)
T KOG4162|consen 483 YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL---- 558 (799)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh----
Confidence 9999999999999999999999999 55678999999999999999999999999999998887655444333333
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH---------HHHHHHcCChhHHHHHHHHHHhc--
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL---------ANAYYLTGDHRSSGKCLEKAAKL-- 318 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~~-- 318 (470)
..++.++|+..+...+..-.....+-..+ +......++..+|+..+.++...
T Consensus 559 -----------------~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 559 -----------------TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred -----------------hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 57888888888887776544322222222 22233334555555555544321
Q ss_pred -----------------CCCcccHHHHHHHHHHH--HhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHH
Q 012143 319 -----------------EPNCMSTRYAVAVSRIK--DAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 379 (470)
Q Consensus 319 -----------------~p~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (470)
.|.....|+..-...+. ........ -.....++.+...+.+..+..|+..|..+
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~-------~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN-------DDEARSCLLEASKIDPLSASVYYLRGLLL 694 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHhcchhhHHHHHHhhHHH
Confidence 12222222221111111 00000100 11223344555556677888999999999
Q ss_pred hccccHHHHHHHHHHH--hcchhhhhHhhHHHHHHHhccHHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 012143 380 KTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVNVAKE--CLLAALKADPKAAHIWANLANAYYLTGDHRSSG 455 (470)
Q Consensus 380 ~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 455 (470)
...|+..+|...|..+ ++|........+|.++.+.|+..-|.. ++..+++++|.++++|+.+|.++.++|+.++|.
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 9999999999999985 557777888899999999999888888 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCC
Q 012143 456 KCLEKVLMVYCSSNL 470 (470)
Q Consensus 456 ~~~~~al~~~~~~~~ 470 (470)
++|..++++-++++|
T Consensus 775 ecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 775 ECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhhccCCCc
Confidence 999999999887764
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.92 E-value=5.3e-24 Score=186.43 Aligned_cols=255 Identities=22% Similarity=0.209 Sum_probs=112.1
Q ss_pred ccCcccHHHHHHHHHHhhhc--CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHH
Q 012143 142 ELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 219 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (470)
++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A 96 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 56788899999999776544 488999999999999999999999999999999999999999999988 799999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Q 012143 220 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWANLAN 297 (470)
Q Consensus 220 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~ 297 (470)
+..++++.+..+ ++..+.....++. ..++++++...++++.... |.++..|..+|.
T Consensus 97 ~~~~~~~~~~~~-~~~~l~~~l~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 97 LKLAEKAYERDG-DPRYLLSALQLYY---------------------RLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp ----------------------H-HH---------------------HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred cccccccccccc-ccchhhHHHHHHH---------------------HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 999999987654 4455555555544 7899999999999987655 678999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 377 (470)
++.+.|++++|+.+|+++++.+|++.. ++..++.
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~----------------------------------------------~~~~l~~ 188 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPD----------------------------------------------ARNALAW 188 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HH----------------------------------------------HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHH----------------------------------------------HHHHHHH
Confidence 999999999999999999999999654 4555667
Q ss_pred HHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 012143 378 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 455 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 455 (470)
++...|+.+++...+..... +.++..+..+|.++...|++++|+.+|++++..+|+++..+..+|.++...|+.++|.
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 78888888886666665333 5566778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 012143 456 KCLEKVLMVY 465 (470)
Q Consensus 456 ~~~~~al~~~ 465 (470)
.+++++++..
T Consensus 269 ~~~~~~~~~l 278 (280)
T PF13429_consen 269 RLRRQALRLL 278 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999998765
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-22 Score=177.26 Aligned_cols=280 Identities=16% Similarity=0.120 Sum_probs=242.2
Q ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHH
Q 012143 5 MDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLM 84 (470)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 84 (470)
.+.....+-.++..+++++-. ..++..++.+|-+...+...-.+ +...|+..+..-.=.+.++..|+.+..|+.+|..
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~-kit~~lle~dpfh~~~~~~~ia~-l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECL-KITEELLEKDPFHLPCLPLHIAC-LYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHH-HHhHHHHhhCCCCcchHHHHHHH-HHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 344445667788889999998 88999999999888877654447 8899999888888889999999999999999999
Q ss_pred HHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc
Q 012143 85 YQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR 164 (470)
Q Consensus 85 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 164 (470)
|...|++.+|..+|.++..++|.- +..|.+.|..+...+ ..++|+..|..+-+.-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~f------------gpaWl~fghsfa~e~-----------EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTF------------GPAWLAFGHSFAGEG-----------EHDQAMAAYFTAARLMPG 378 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccc------------cHHHHHHhHHhhhcc-----------hHHHHHHHHHHHHHhccC
Confidence 999999999999999999997653 345566666655444 459999999999999999
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----C---ChHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ----N---HPAAL 237 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~---~~~~~ 237 (470)
.-...+.+|.-|.+.+++.-|.+.|.+++.+.|.+|-++..+|.+.+..+.|.+|..+|+.++..-+ . ..+.+
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~ 458 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL 458 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH
Confidence 9889999999999999999999999999999999999999999999999999999999999984321 1 23345
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
.++|.++. +.+++++|+.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.
T Consensus 459 ~NLGH~~R---------------------kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 459 NNLGHAYR---------------------KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HhHHHHHH---------------------HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 56666655 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccHHHHHH
Q 012143 318 LEPNCMSTRYAVA 330 (470)
Q Consensus 318 ~~p~~~~~~~~l~ 330 (470)
+.|++..+.-.+.
T Consensus 518 l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 518 LKPDNIFISELLK 530 (611)
T ss_pred cCCccHHHHHHHH
Confidence 9999866554443
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=2.8e-24 Score=188.24 Aligned_cols=259 Identities=18% Similarity=0.147 Sum_probs=118.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHh-c-CCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 12 GKKINKLGKCRSRISSKMDSALE-F-GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~-~-~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
+..+...|++++|. ..+.+.+. . .|++...|..+|.+ ....++++.|+..+++++..+|.++..+..++.+ ...+
T Consensus 15 A~~~~~~~~~~~Al-~~L~~~~~~~~~~~~~~~~~~~a~L-a~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKAL-EVLKKAAQKIAPPDDPEYWRLLADL-AWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc-ccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccc
Confidence 66788899999999 88866554 4 48888899999999 9999999999999999999999999988888888 7899
Q ss_pred ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC--ccchH
Q 012143 90 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--TRQAV 167 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~ 167 (470)
++++|+.++.++.+..+++ ..+ .....+ +...++++++...++++.... |.++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~-------~~l------~~~l~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 147 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDP-------RYL------LSALQL-----------YYRLGDYDEAEELLEKLEELPAAPDSAR 147 (280)
T ss_dssp ---------------------------------------H------------HHHTT-HHHHHHHHHHHHH-T---T-HH
T ss_pred ccccccccccccccccccc-------chh------hHHHHH-----------HHHHhHHHHHHHHHHHHHhccCCCCCHH
Confidence 9999999999988764332 111 111111 345677899999999876544 67788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 247 (470)
.|..+|.++.+.|++++|+.+|+++++.+|+++.+...++.++...|+++++.+.+.......|.++..+..+|.++.
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~-- 225 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL-- 225 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999988888888888888888887
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
..|++++|+.+|+++++.+|+++.++..+|.++...|+.++|..++.+++..
T Consensus 226 -------------------~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 226 -------------------QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -------------------HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred -------------------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999999999999999999999999999988753
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=9.9e-22 Score=168.18 Aligned_cols=404 Identities=17% Similarity=0.094 Sum_probs=300.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCC-----cchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDA-----DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMY 85 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 85 (470)
-|+.+++...+.+++ ..|.-+|..-|.- .....+.|.. +.+.|.|+.|+..|+.+.+..|+.. +-++|..|+
T Consensus 243 igni~~kkr~fskai-kfyrmaldqvpsink~~rikil~nigvt-fiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAI-KFYRMALDQVPSINKDMRIKILNNIGVT-FIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICA 319 (840)
T ss_pred ecceeeehhhHHHHH-HHHHHHHhhccccchhhHHHHHhhcCee-EEecccchhhHhhHHHHHHhCccHH-hhhhhhhhh
Confidence 356677777888888 8888888887753 2355678888 9999999999999999999988755 445677888
Q ss_pred HHhCChhHHHHHHHHHHHHHh--hhhccc---chhh-----------hH----------------HHHHHh-------hh
Q 012143 86 QRLGQPLKAVSSYEKAEEILL--RCEADI---ARPE-----------LL----------------SLVQIH-------HA 126 (470)
Q Consensus 86 ~~~g~~~~A~~~~~~al~~~~--~~~~~~---~~~~-----------~~----------------~~~~~~-------~~ 126 (470)
+..|+-++-.+.|.+.+.+-. +++... ..|+ .+ ..+.+. ++
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 889999999999999887521 110000 0000 00 000000 00
Q ss_pred ----c------cccccc----cCCCccccccCcccHHHHHHHHHHhhhcCccch-HHHHHHHHHHHHc--CChHHHHHHH
Q 012143 127 ----Q------CLLPES----SGDNSLDKELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKS--GRLQSSISVL 189 (470)
Q Consensus 127 ----~------~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~--~~~~~A~~~~ 189 (470)
+ +..+.. +.-...-.++++|+++.|+++++-.-..+.... .+-.++..+++.+ .++.+|..+-
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 0 000000 001112247899999999999877665554332 3445566666664 4788999999
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC
Q 012143 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 269 (470)
Q Consensus 190 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (470)
..++.++.-++.++.+.|.+-+..|++++|.+.|+.++..+.....+++++|..+. .+|
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e---------------------~~~ 538 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE---------------------ALG 538 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH---------------------Hhc
Confidence 99999999999999999999999999999999999999999888899888887776 799
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhh
Q 012143 270 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSW 349 (470)
Q Consensus 270 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 349 (470)
+.++|+++|-+.-.+--++..++..++.+|..+.+..+|++++.++..+-|+++..+..++-..-.+..+..
T Consensus 539 ~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq-------- 610 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ-------- 610 (840)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh--------
Confidence 999999999998888888999999999999999999999999999999999998877666543322221111
Q ss_pred hHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHH--HhcchhhhhHhhHHHHHHHhccHHHHHHHHHHH
Q 012143 350 AGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAA 427 (470)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 427 (470)
+ ....-......|.+.+....++..|....-+++++..+.+ .+.|....-...++.|+.+.|+|.+|.+.|+..
T Consensus 611 a----fq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 611 A----FQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred h----hhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1 1111222333456667777888899999999999999988 345666666678889999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCC
Q 012143 428 LKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 428 l~~~p~~~~~~~~la~~~~~~g~ 450 (470)
-...|.+.+.+..|-++.-.+|-
T Consensus 687 hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 687 HRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhCccchHHHHHHHHHhccccc
Confidence 99999999999888888877664
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.91 E-value=1.7e-21 Score=185.84 Aligned_cols=250 Identities=14% Similarity=0.047 Sum_probs=206.1
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc---------CChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 214 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 214 (470)
..+++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 346678999999999999999999999999887744 34789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 215 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 215 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
++++|+..|+++++++|+++.++..+|.++. ..|++++|+..++++++++|.++..+..
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLF---------------------MAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 9999999999999999999999999988887 6999999999999999999998888777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHH
Q 012143 295 LANAYYLTGDHRSSGKCLEKAAKLE-PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 373 (470)
Q Consensus 295 la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (470)
++.+++..|++++|+..+++++... |++ +..+.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~----------------------------------------------~~~~~ 445 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDN----------------------------------------------PILLS 445 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccC----------------------------------------------HHHHH
Confidence 7888888999999999999998775 443 23566
Q ss_pred HHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 012143 374 GFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 451 (470)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 451 (470)
.+|.++...|++++|...+.+... +....++..++..+...| ++|...+++.++..-..+.-...+..+|.-.|+.
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~ 523 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEA 523 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhh
Confidence 778888889999999999887544 333345667777777777 4777777776654333333334488888889998
Q ss_pred HHHHHHHHHHHH
Q 012143 452 RSSGKCLEKVLM 463 (470)
Q Consensus 452 ~~A~~~~~~al~ 463 (470)
+.+..+ +++.+
T Consensus 524 ~~~~~~-~~~~~ 534 (553)
T PRK12370 524 IAEKMW-NKFKN 534 (553)
T ss_pred HHHHHH-HHhhc
Confidence 888877 66544
No 37
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=178.21 Aligned_cols=263 Identities=17% Similarity=0.168 Sum_probs=222.6
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 8 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 8 ~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
.-.||..+.+.|...+|+ -.|+.++..+|+++++|..+|.+ ....++-..|+.+++++++++|+|..++..||..|..
T Consensus 288 Pf~eG~~lm~nG~L~~A~-LafEAAVkqdP~haeAW~~LG~~-qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAA-LAFEAAVKQDPQHAEAWQKLGIT-QAENENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred hHHHHHHHHhcCCchHHH-HHHHHHHhhChHHHHHHHHhhhH-hhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 345899999999999999 89999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc--cc
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT--RQ 165 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~ 165 (470)
.|.-.+|+.++++-+...|....... +..-..-+. -........+..-.+.|-.+....| .+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~--------------a~~~~~~~~--~~s~~~~~~l~~i~~~fLeaa~~~~~~~D 429 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVS--------------AGENEDFEN--TKSFLDSSHLAHIQELFLEAARQLPTKID 429 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccc--------------cCccccccC--CcCCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999987654321110 000000000 0012334456677788888888888 78
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+++...||.+|...|+|++|++||+.|+...|++...|..||-++..-.+..+|+..|.+|+++.|....+++++|..++
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHcCChhHHH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------AAHIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----------~~~~~~~la~~~~~~g~~~~A~ 309 (470)
..|.|++|+++|-.+|.+.+. +..+|..|=.++...++.+-+.
T Consensus 510 ---------------------NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 510 ---------------------NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ---------------------hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 699999999999999988665 1246777767777777766443
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.90 E-value=6.1e-21 Score=175.52 Aligned_cols=298 Identities=16% Similarity=0.121 Sum_probs=183.5
Q ss_pred hhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q 012143 44 SGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQI 123 (470)
Q Consensus 44 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 123 (470)
...|.. ....|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|
T Consensus 88 ~~~gll-a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p----------------- 149 (409)
T TIGR00540 88 TEEALL-KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG----------------- 149 (409)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------
Confidence 344555 66677777777777777777776666666677777777777777777777665433
Q ss_pred hhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch-HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH
Q 012143 124 HHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 202 (470)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 202 (470)
++. .+....+.++...|+++.|...+++.++..|+++.+
T Consensus 150 ----------------------------------------~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~ 189 (409)
T TIGR00540 150 ----------------------------------------NDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEV 189 (409)
T ss_pred ----------------------------------------cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 322 233334566666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH----HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI----NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
+..++.++...|++++|.+.+.+..+..+.++.... ....-.. ..+..+++.+.+
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l---------------------~~~~~~~~~~~L 248 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL---------------------DEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---------------------HHHHHhcCHHHH
Confidence 666666666666666666666666655333332221 1111111 123334445555
Q ss_pred HHHHhcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHH
Q 012143 279 LAALKADP----KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEM 354 (470)
Q Consensus 279 ~~~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (470)
.++....| +++..+..++..+...|++++|...++++++..|++....+.... ...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~-~~~------------------- 308 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCL-PIP------------------- 308 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHH-Hhh-------------------
Confidence 55555555 366677777777777777777777777777766666543211100 000
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh--cchhh--hhHhhHHHHHHHhccHHHHHHHHH--HHH
Q 012143 355 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEE--CAGAGESAFLDQASAVNVAKECLL--AAL 428 (470)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~--~al 428 (470)
....++...+++.+++.+ .|.++ .....+|.++.+.|++++|.++|+ .++
T Consensus 309 ------------------------~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 309 ------------------------RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC 364 (409)
T ss_pred ------------------------hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh
Confidence 001112223333343322 23444 445577888999999999999999 688
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 429 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 429 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+..|+... +..+|.++.++|+.++|.++|++++...
T Consensus 365 ~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 365 KEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred hcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88897766 5599999999999999999999998876
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=3.2e-20 Score=180.26 Aligned_cols=400 Identities=9% Similarity=-0.006 Sum_probs=284.2
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHH
Q 012143 6 DVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMY 85 (470)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 85 (470)
+..-..+....+.|++..|+ +.+.++++.+|++......+..+ +...|+.++|+..+++++...|.....+..+|.++
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al-~~L~qaL~~~P~~~~av~dll~l-~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVL-DYLQEESKAGPLQSGQVDDWLQI-AGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHH-HHHHHHHhhCccchhhHHHHHHH-HHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 34455677889999999999 99999999999996544466666 77789999999999999933344444555558899
Q ss_pred HHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc
Q 012143 86 QRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 165 (470)
Q Consensus 86 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 165 (470)
...|++++|++.|+++++.+|++. ... ..++.+ +...++.++|+..++++...+|.+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~------~~l------~gLa~~-----------y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNP------DLI------SGMIMT-----------QADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCH------HHH------HHHHHH-----------HhhcCCHHHHHHHHHHhcccCcch
Confidence 999999999999999999988752 221 222333 345577799999999999999986
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHH----------------------
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF---------------------- 223 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---------------------- 223 (470)
... ..++.++...++..+|+..++++++.+|++..++..+..++...|-...|.+..
T Consensus 170 ~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 170 QNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAE 248 (822)
T ss_pred HHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHH
Confidence 554 666777777888878999999999999999998888887777766555444433
Q ss_pred --------------------------HHHHhhCCCChHH---H----HHHHHHHHhh--hccccc------------ccc
Q 012143 224 --------------------------QDLILKDQNHPAA---L----INYAALLLCK--YGSVLA------------GAG 256 (470)
Q Consensus 224 --------------------------~~~l~~~p~~~~~---~----~~l~~~~~~~--~~~~~~------------~~~ 256 (470)
+..+...|..+.. + ...-.++... ...... ..-
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 3333322222211 1 0000011100 000000 122
Q ss_pred cchhhhhHHHhcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---------
Q 012143 257 ANTGEGACLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN--------- 321 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--------- 321 (470)
.....|..|...+++++|+.+|.+++.-.| ........|..+|...+++++|..++++.....|-
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 344578999999999999999999988653 23444578889999999999999999999986662
Q ss_pred -cccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHH--Hhcc
Q 012143 322 -CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN--ELSK 398 (470)
Q Consensus 322 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~ 398 (470)
.+..-+.-+.............. ......+.......|.++.++..+|.++...|.+.+|...++. .+.|
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl-------~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDL-------PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 11111111111111111111111 1222333333445678899999999999999999999999987 5567
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHH
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIW 438 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 438 (470)
.+..+.++.|.++..++++.+|.....++++..|+++...
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 7778899999999999999999999999999999998543
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=4e-20 Score=171.11 Aligned_cols=385 Identities=12% Similarity=0.038 Sum_probs=282.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 8 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 8 ~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
.-.+++.++--|+.++|. ..+..+|..+|.++.+|+.+|.+ +...|+.+++....-.+..++|++.+.|..++....+
T Consensus 142 ll~eAN~lfarg~~eeA~-~i~~EvIkqdp~~~~ay~tL~~I-yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAE-EILMEVIKQDPRNPIAYYTLGEI-YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHH-HHHHHHHHhCccchhhHHHHHHH-HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 344778888889999999 99999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc--
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ-- 165 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-- 165 (470)
+|++.+|.-+|.+|++.+|.+- +- ....+.+ +.+.|+...|...|.+++...|..
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~-----~~-------~~ers~L-----------~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNW-----EL-------IYERSSL-----------YQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcch-----HH-------HHHHHHH-----------HHHhChHHHHHHHHHHHHhhCCchhH
Confidence 9999999999999999987651 11 1222222 345677799999999999999832
Q ss_pred ---hHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCChHHHH
Q 012143 166 ---AVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL--KDQNHPAALI 238 (470)
Q Consensus 166 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~ 238 (470)
-+.....+..+...++-+.|++.++.++.. +.-..+.+..++.++.....++.|......... ..+++...-.
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 123344577788888889999999999883 233445677889999999999999888776554 1111111100
Q ss_pred -HHH----HHHHhhhccccccccc-chhhhhHHHhcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhHHHHH
Q 012143 239 -NYA----ALLLCKYGSVLAGAGA-NTGEGACLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDHRSSGKC 311 (470)
Q Consensus 239 -~l~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~ 311 (470)
.-. ................ ...++.+..+.++..+++..+..--...| +.+..+..++.++...|++.+|+.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 000 0000000000001111 22233444456666666666554433334 3678899999999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHH
Q 012143 312 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 391 (470)
Q Consensus 312 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 391 (470)
|..+....+.. +..+|..+|.++...|.+++|+..
T Consensus 437 l~~i~~~~~~~---------------------------------------------~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 437 LSPITNREGYQ---------------------------------------------NAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred HHHHhcCcccc---------------------------------------------chhhhHHHHHHHHHHhhHHHHHHH
Confidence 99888765542 235789999999999999999999
Q ss_pred HHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012143 392 EENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTGDHRSSGKCLEK 460 (470)
Q Consensus 392 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~ 460 (470)
|.+.+. |...++...++.++.+.|+.++|++.++....-+|. ...+......++...|+.++=+..-..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999655 666788999999999999999999999887633322 234567788889999998885444433
Q ss_pred HH
Q 012143 461 VL 462 (470)
Q Consensus 461 al 462 (470)
.+
T Consensus 552 Lv 553 (895)
T KOG2076|consen 552 LV 553 (895)
T ss_pred HH
Confidence 33
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.90 E-value=2.7e-21 Score=169.26 Aligned_cols=237 Identities=17% Similarity=0.141 Sum_probs=185.4
Q ss_pred cCcccHHHHHHHHHHhhhcCc----cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQSDT----RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 218 (470)
...+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 456788999999999996443 3367899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
|+..|+++++++|++..++..+|.++. ..|++++|++.|+++++.+|+++..... ..+
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l 174 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALY---------------------YGGRYELAQDDLLAFYQDDPNDPYRALW-LYL 174 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHH
Confidence 999999999999999999999998887 6899999999999999999998742222 223
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH
Q 012143 299 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 378 (470)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (470)
....+++++|+..+.+.....+... |. .+.+
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~~~~~~------------------------------------------------~~-~~~~ 205 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEKLDKEQ------------------------------------------------WG-WNIV 205 (296)
T ss_pred HHccCCHHHHHHHHHHHHhhCCccc------------------------------------------------cH-HHHH
Confidence 4567889999999987765433211 11 1222
Q ss_pred HhccccH--HHHHHHHHHH------hcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcC
Q 012143 379 QKTHHEV--AAAFETEENE------LSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTG 449 (470)
Q Consensus 379 ~~~~~~~--~~A~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 449 (470)
....|+. ++++..+... +.+....+|+.+|.++...|++++|+.+|+++++.+| +.++..+.+..+....+
T Consensus 206 ~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 206 EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 3333433 3344444432 2344557899999999999999999999999999996 66777776666655544
Q ss_pred C
Q 012143 450 D 450 (470)
Q Consensus 450 ~ 450 (470)
.
T Consensus 286 ~ 286 (296)
T PRK11189 286 D 286 (296)
T ss_pred h
Confidence 4
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=1e-20 Score=180.53 Aligned_cols=204 Identities=13% Similarity=0.062 Sum_probs=169.4
Q ss_pred cChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccccccc
Q 012143 55 EKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 134 (470)
Q Consensus 55 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (470)
+.+++|...|+++++.+|+++.++..+|.++...+....
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~----------------------------------------- 313 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI----------------------------------------- 313 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-----------------------------------------
Confidence 445666667777777777766666666666654322110
Q ss_pred CCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC
Q 012143 135 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 214 (470)
Q Consensus 135 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 214 (470)
....+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 314 -------~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 314 -------FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAG 386 (553)
T ss_pred -------cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 1134567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHH
Q 012143 215 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAHIWA 293 (470)
Q Consensus 215 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 293 (470)
++++|+..++++++++|.++.....++.++. ..|++++|+..+++++... |+++..+.
T Consensus 387 ~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~---------------------~~g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 387 QLEEALQTINECLKLDPTRAAAGITKLWITY---------------------YHTGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHH---------------------hccCHHHHHHHHHHHHHhccccCHHHHH
Confidence 9999999999999999998877655555444 5889999999999999875 78899999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 294 NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 294 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
.+|.++...|++++|...+.++....|....+..
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~ 479 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQEITGLIAVN 479 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHH
Confidence 9999999999999999999998877776544433
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=9.1e-20 Score=162.80 Aligned_cols=366 Identities=16% Similarity=0.079 Sum_probs=305.8
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHH
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKA 94 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A 94 (470)
+.+.+-++=+. ..|..+|...|.....|...... -..-|..+....+|++++..-|.....|.+.+..+...|+...|
T Consensus 526 ~~k~~~~~car-AVya~alqvfp~k~slWlra~~~-ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECAR-AVYAHALQVFPCKKSLWLRAAMF-EKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHH-HHHHHHHhhccchhHHHHHHHHH-HHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHH
Confidence 44445555555 78999999999999999988877 77789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHH
Q 012143 95 VSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL 174 (470)
Q Consensus 95 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 174 (470)
...+.++++.+|+++. +|..... ......+++.|..+|.++....|. ..+|+.-+.
T Consensus 604 r~il~~af~~~pnsee------------iwlaavK-----------le~en~e~eraR~llakar~~sgT-eRv~mKs~~ 659 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEE------------IWLAAVK-----------LEFENDELERARDLLAKARSISGT-ERVWMKSAN 659 (913)
T ss_pred HHHHHHHHHhCCCcHH------------HHHHHHH-----------HhhccccHHHHHHHHHHHhccCCc-chhhHHHhH
Confidence 9999999999877532 2222111 135677899999999999987765 678999999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccc
Q 012143 175 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (470)
....+++.++|+..++++++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-.
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE--------- 730 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE--------- 730 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 334 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 334 (470)
+.|+...|...++++.-.+|++...|......-.+.|+.+.|.....++++..|++...|..-....-
T Consensus 731 ------------k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 731 ------------KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP 798 (913)
T ss_pred ------------HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence 68899999999999999999999999999999999999999999999999999998766653221100
Q ss_pred HHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHH
Q 012143 335 KDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLD 412 (470)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 412 (470)
....-. .....+. ....++.+....+..+....++++|.+.|.+++. +...++|..+-..+.
T Consensus 799 --------~~~rkT----ks~DALk----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 799 --------RPQRKT----KSIDALK----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL 862 (913)
T ss_pred --------Ccccch----HHHHHHH----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH
Confidence 000000 0011111 1225678999999999999999999999999765 666677776666888
Q ss_pred HhccHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012143 413 QASAVNVAKECLLAALKADPKAAHIWANLAN 443 (470)
Q Consensus 413 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 443 (470)
+.|.-++-.+.+.+...-.|.+.+.|.....
T Consensus 863 ~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 863 RHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999999999988876654
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.89 E-value=2.4e-20 Score=163.33 Aligned_cols=221 Identities=16% Similarity=0.115 Sum_probs=179.4
Q ss_pred cCChHHHHHHHHHHhhcCC---C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccc
Q 012143 179 SGRLQSSISVLSSLLAVDP---N-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 179 ~~~~~~A~~~~~~a~~~~~---~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (470)
.+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~--------- 109 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT--------- 109 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------
Confidence 3577889999999996444 3 36789999999999999999999999999999999999999999888
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 334 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 334 (470)
..|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++.+|+++. .
T Consensus 110 ------------~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~--~------- 168 (296)
T PRK11189 110 ------------QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY--R------- 168 (296)
T ss_pred ------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--H-------
Confidence 7999999999999999999999999999999999999999999999999999999752 0
Q ss_pred HHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHh
Q 012143 335 KDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQA 414 (470)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (470)
..|.. +....+++++|+..+.+.....++..|. .+.+....
T Consensus 169 -----------------------------------~~~~~---l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~l 209 (296)
T PRK11189 169 -----------------------------------ALWLY---LAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYL 209 (296)
T ss_pred -----------------------------------HHHHH---HHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHc
Confidence 01221 2234568899999997766544444443 45566666
Q ss_pred ccHHHH--HHHH----HHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 415 SAVNVA--KECL----LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 415 ~~~~~A--~~~~----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|++.++ +..+ +..+++.|+.+++|+++|.++..+|++++|+.+|++++++.|.+
T Consensus 210 g~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 210 GKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred cCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 665433 3222 33335677788999999999999999999999999999987643
No 45
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.89 E-value=3e-20 Score=173.11 Aligned_cols=402 Identities=12% Similarity=0.057 Sum_probs=306.5
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 21 CRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 21 ~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
...++ ..+-+++.++|.-+.+|..+|.. +....+..+|.++|.++.++||.+..++-..+..|....+++.|....-.
T Consensus 474 ~~~al-~ali~alrld~~~apaf~~LG~i-Yrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALAL-HALIRALRLDVSLAPAFAFLGQI-YRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHH-HHHHHHHhcccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45667 78899999999999999999999 88888999999999999999999999999999999999999999998555
Q ss_pred HHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC
Q 012143 101 AEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180 (470)
Q Consensus 101 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 180 (470)
+-+..|.. .....|...|. . +++.+++..|+..|+.+++.+|.+..+|..+|.+|...|
T Consensus 552 ~~qka~a~----------~~k~nW~~rG~-------y----yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 552 AAQKAPAF----------ACKENWVQRGP-------Y----YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG 610 (1238)
T ss_pred HhhhchHH----------HHHhhhhhccc-------c----ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC
Confidence 54443221 11122222333 3 678888999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchh
Q 012143 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 260 (470)
Q Consensus 181 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (470)
++..|++.|.++..++|.+.-..+..+.+...+|+|.+|+..+...+............++.++.+.
T Consensus 611 ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~------------- 677 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD------------- 677 (1238)
T ss_pred ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999987777777777777777642
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHh-------cC-CCCHHHHHHHHHHHHH-----------------------cCCh----
Q 012143 261 EGACLDQASAVNVAKECLLAALK-------AD-PKAAHIWANLANAYYL-----------------------TGDH---- 305 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~-------~~-p~~~~~~~~la~~~~~-----------------------~g~~---- 305 (470)
+..+.-.|=..+|.+++++.++ .. -++...|..+|.+..- .+..
T Consensus 678 -akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d 756 (1238)
T KOG1127|consen 678 -AKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKND 756 (1238)
T ss_pred -HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchh
Confidence 2222333444444444444433 22 2233334333332211 1111
Q ss_pred --hHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccc
Q 012143 306 --RSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH 383 (470)
Q Consensus 306 --~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (470)
--+.+++-..+.... ++..|++++...++......+.......+...+...+.. ..++...|..+|.+ ...|
T Consensus 757 ~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L----~ann~~~WnaLGVl-sg~g 830 (1238)
T KOG1127|consen 757 LLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL----CANNEGLWNALGVL-SGIG 830 (1238)
T ss_pred HHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH----hhccHHHHHHHHHh-hccc
Confidence 123444444444332 266788888887776555554444443444444444433 33567899999999 6668
Q ss_pred cHHHHHHHHHH--HhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 384 EVAAAFETEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 384 ~~~~A~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
++.-|...|-+ .+.|.....|.++|.++....+++.|...|.++..++|.+...|...+.+....|+.-++...|...
T Consensus 831 nva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs 910 (1238)
T KOG1127|consen 831 NVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHS 910 (1238)
T ss_pred hhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 99999888887 4557777889999999999999999999999999999999999999999999999999999999885
Q ss_pred HHhh
Q 012143 462 LMVY 465 (470)
Q Consensus 462 l~~~ 465 (470)
.++.
T Consensus 911 ~el~ 914 (1238)
T KOG1127|consen 911 DELC 914 (1238)
T ss_pred HHhh
Confidence 5544
No 46
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.8e-20 Score=162.10 Aligned_cols=286 Identities=15% Similarity=0.174 Sum_probs=204.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..|+|+.|+..|..++.++|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+.-+|+|++|+.
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcc--cccc---------------------------------------------
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGS--VLAG--------------------------------------------- 254 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~--~~~~--------------------------------------------- 254 (470)
.|.+.++.+|++......+..++...... ....
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 99999999999999888888776322100 0000
Q ss_pred ----------------------------------------------------cccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 255 ----------------------------------------------------AGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 255 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
+.....+|....+..++..|++.|..++
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 0011113444444444455555555555
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
+++ .+...+.+.+.+|+..|.+.+.+....++++.......-...+
T Consensus 252 el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klI--------------------------------- 297 (539)
T KOG0548|consen 252 ELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLI--------------------------------- 297 (539)
T ss_pred hHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHH---------------------------------
Confidence 544 4444444455555555555444444444443322211111111
Q ss_pred CCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc----------------------------chhhhhHhhHHHHHHHh
Q 012143 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS----------------------------KMEECAGAGESAFLDQA 414 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~ 414 (470)
......+|..+...++++.++..|.+.+. |.-......-|..++..
T Consensus 298 ------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 298 ------AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred ------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc
Confidence 11222344455555555555555544332 22222233668899999
Q ss_pred ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 415 SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 415 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|+|..|+..|.+++..+|+++..|.+.|-||.++|++..|+...++++++-|+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999999998664
No 47
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=172.72 Aligned_cols=235 Identities=20% Similarity=0.277 Sum_probs=174.9
Q ss_pred cccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 012143 141 KELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 220 (470)
Q Consensus 141 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (470)
.+++.|++.+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q 012143 221 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANA 298 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~ 298 (470)
.++.+.+...|........--.... ...........+..-.+.|..+....| .+++++..||.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~--------------~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDF--------------ENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHHHhCccchhccccCccccc--------------cCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 9999999887754322110000000 000000112234455667777777788 689999999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH
Q 012143 299 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 378 (470)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (470)
|...|+|++|+.+|+.++...|++.. .|..+|-.
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~----------------------------------------------lWNRLGAt 473 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYL----------------------------------------------LWNRLGAT 473 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHH----------------------------------------------HHHHhhHH
Confidence 99999999999999999999999653 44444444
Q ss_pred HhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 012143 379 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 379 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 458 (470)
+. ...+..+|+..|.+|+++.|..+.++++||.++..+|.|++|+++|
T Consensus 474 LA--------------------------------N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 474 LA--------------------------------NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hc--------------------------------CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 44 4444555666666666666666666666666666666666666666
Q ss_pred HHHHHhhcc
Q 012143 459 EKVLMVYCS 467 (470)
Q Consensus 459 ~~al~~~~~ 467 (470)
-.||.+-++
T Consensus 522 L~AL~mq~k 530 (579)
T KOG1125|consen 522 LEALSMQRK 530 (579)
T ss_pred HHHHHhhhc
Confidence 666655543
No 48
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.88 E-value=4.1e-20 Score=182.51 Aligned_cols=380 Identities=11% Similarity=0.034 Sum_probs=259.6
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHH
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS 119 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 119 (470)
...+..+... +.+.|+++.|.+.|++..+ .+...|..+...|.+.|++++|+..|++..+..+.++. ..+..
T Consensus 158 ~~~~n~Li~~-y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~----~t~~~ 229 (697)
T PLN03081 158 QYMMNRVLLM-HVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP----RTFVV 229 (697)
T ss_pred hHHHHHHHHH-HhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh----hhHHH
Confidence 4455666666 7888899999999987642 35678899999999999999999999999876443221 11111
Q ss_pred HHHHhhhccccc---------cc--------cCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh
Q 012143 120 LVQIHHAQCLLP---------ES--------SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL 182 (470)
Q Consensus 120 ~~~~~~~~~~~~---------~~--------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 182 (470)
....+...+.+. .. ......+.|.+.|++++|...|+++.. .+..+|..+...|.+.|++
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCH
Confidence 111110000000 00 000012235566777777777776642 3556777777777777777
Q ss_pred HHHHHHHHHHhhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhhhcccccccccchh
Q 012143 183 QSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTG 260 (470)
Q Consensus 183 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (470)
++|+..|++..+.. ..+...+..+...+.+.|++++|.+.+..+++.. +.+...+..+...|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y---------------- 370 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY---------------- 370 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH----------------
Confidence 77777777765532 1234566777777777777777777777776654 33444455555554
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--CCcccHHHHHHHHHHHHhh
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE--PNCMSTRYAVAVSRIKDAE 338 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~ 338 (470)
.+.|++++|...|++..+ | +...|..+...|.+.|+.++|++.|++..... |+... +...+. +.
T Consensus 371 -----~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T--~~~ll~----a~ 436 (697)
T PLN03081 371 -----SKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT--FLAVLS----AC 436 (697)
T ss_pred -----HHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH--HHHHHH----HH
Confidence 489999999999998754 3 57889999999999999999999999988743 44222 211111 11
Q ss_pred hccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHH
Q 012143 339 RSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVN 418 (470)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 418 (470)
......+.....+..+... ....| +...|..+...+.+.|++++|.+.+.+.....+...|..+...+...|+++
T Consensus 437 ~~~g~~~~a~~~f~~m~~~----~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSEN----HRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred hcCCcHHHHHHHHHHHHHh----cCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcH
Confidence 1112222222222222211 12222 235788999999999999999999987544455567889999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 419 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 419 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
.|...+++.+++.|++...|..++.+|...|++++|.+.++++.+.-
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999877653
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=5.2e-20 Score=157.76 Aligned_cols=334 Identities=16% Similarity=0.149 Sum_probs=243.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhC--------------CCChh
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKM--------------PKNAH 76 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------------p~~~~ 76 (470)
.|..+...|.+..++ ..|+.+.+..|+...++. +-.+ ++.-|+-+...+.|.+.+... |++.-
T Consensus 282 igvtfiq~gqy~dai-nsfdh~m~~~pn~~a~~n-l~i~-~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAI-NSFDHCMEEAPNFIAALN-LIIC-AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred cCeeEEecccchhhH-hhHHHHHHhCccHHhhhh-hhhh-heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 455666788899999 899999998887665443 3344 556666677777777665321 11100
Q ss_pred --------------------------------------------------------------HHHHHHHHHHHhCChhHH
Q 012143 77 --------------------------------------------------------------AHFLLGLMYQRLGQPLKA 94 (470)
Q Consensus 77 --------------------------------------------------------------~~~~l~~~~~~~g~~~~A 94 (470)
.-...+-.+++.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 001223334555666666
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHH
Q 012143 95 VSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL 174 (470)
Q Consensus 95 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 174 (470)
++.++-.-+.+.. ....+-.+++.++...| ..++..|..+...++..+..++.++.+.|.
T Consensus 439 ieilkv~~~kdnk-----------~~saaa~nl~~l~flqg---------gk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 439 IEILKVFEKKDNK-----------TASAAANNLCALRFLQG---------GKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred HHHHHHHHhccch-----------hhHHHhhhhHHHHHHhc---------ccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 6655433222111 00111223333332111 246889999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccc
Q 012143 175 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (470)
+-+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|.
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye--------- 569 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE--------- 569 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999987777777777777777765
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 334 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 334 (470)
...+..+|++++.++..+-|++|.++..||.+|-+.|+-.+|..++-...+..|.+....-.++...+
T Consensus 570 ------------~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 570 ------------LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred ------------HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999998776655555444
Q ss_pred HHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh
Q 012143 335 KDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME 400 (470)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 400 (470)
... ..+.....+.....+.|.........+.++.+.|+|++|+..|+......+
T Consensus 638 dtq------------f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 638 DTQ------------FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred hhH------------HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 311 112233344444555666667777889999999999999999998655333
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=1.8e-19 Score=164.89 Aligned_cols=257 Identities=13% Similarity=0.054 Sum_probs=163.9
Q ss_pred CcccHHHHHHHHHHhhhcCccchH-HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
..|+++.|..++.++.+.+|++.. .....+.++...|++++|+..++++.+.+|+++.++..++.+|...|++++|++.
T Consensus 130 ~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~ 209 (398)
T PRK10747 130 QRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDI 209 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344555555555555555555432 2233467777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCCChHHHH---HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAALI---NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
+.+..+..+.++.... ..+.+... .. .....+.+...+..+...+..|+++.+...++..+
T Consensus 210 l~~l~k~~~~~~~~~~~l~~~a~~~l~---------------~~-~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l 273 (398)
T PRK10747 210 LPSMAKAHVGDEEHRAMLEQQAWIGLM---------------DQ-AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH---------------HH-HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHH
Confidence 7776665554433211 11111100 00 00122334444444444444566777777777777
Q ss_pred HHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHH
Q 012143 300 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 379 (470)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (470)
...|+.++|...++++++..|+ +..... .+ .
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~~~-~~l~~l----------------------------------------------~~--~ 304 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQYD-ERLVLL----------------------------------------------IP--R 304 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCC-HHHHHH----------------------------------------------Hh--h
Confidence 7777777777777777774433 211110 00 1
Q ss_pred hccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 012143 380 KTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 457 (470)
Q Consensus 380 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 457 (470)
...++.+++++..+..+. |.++..+..+|.++...+++++|..+|+++++..|++.. +..++.++.++|+.++|..+
T Consensus 305 l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 122555556666555333 444556677888999999999999999999999998754 66899999999999999999
Q ss_pred HHHHHHhhc
Q 012143 458 LEKVLMVYC 466 (470)
Q Consensus 458 ~~~al~~~~ 466 (470)
|++++.+..
T Consensus 384 ~~~~l~~~~ 392 (398)
T PRK10747 384 RRDGLMLTL 392 (398)
T ss_pred HHHHHhhhc
Confidence 999998763
No 51
>PLN03077 Protein ECB2; Provisional
Probab=99.87 E-value=3.9e-18 Score=172.65 Aligned_cols=382 Identities=11% Similarity=0.018 Sum_probs=270.4
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHH
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS 119 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 119 (470)
...+..+... +.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+....+ +...
T Consensus 323 ~~~~n~Li~~-y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P-------d~~t 391 (857)
T PLN03077 323 VSVCNSLIQM-YLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP-------DEIT 391 (857)
T ss_pred hHHHHHHHHH-HHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-------Ccee
Confidence 3445555555 777888888888888753 3456778888888888888888888888876653222 1111
Q ss_pred HHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 120 LVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
...+... +.+.|++++|.+++..+.+... .+..++..+...|.+.|++++|.+.|++..+ .
T Consensus 392 ~~~ll~a---------------~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~ 453 (857)
T PLN03077 392 IASVLSA---------------CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---K 453 (857)
T ss_pred HHHHHHH---------------HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---C
Confidence 1111111 2356778999999998887643 3466788899999999999999999998543 4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc--------------cccccccchhhhhH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS--------------VLAGAGANTGEGAC 264 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~ 264 (470)
+...|..+...|.+.|++++|+..|+++....+.+...+..+...+.....- ..........+-..
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 5678899999999999999999999999864333443333333222211000 00112233445678
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHhhhccC
Q 012143 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQE 342 (470)
Q Consensus 265 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~ 342 (470)
|.+.|++++|...|+.. +.+...|..+...|...|+.++|+..|++..+. .|+.......+. ... ...
T Consensus 534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~--a~~----~~g 603 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC--ACS----RSG 603 (857)
T ss_pred HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH--HHh----hcC
Confidence 89999999999999986 456889999999999999999999999998874 455443222111 111 111
Q ss_pred chHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHH
Q 012143 343 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKE 422 (470)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 422 (470)
..++....+..+.. ...+.| +...|..+...+.+.|++++|.+.+++.--..+...|..+-..+...++.+.+..
T Consensus 604 ~v~ea~~~f~~M~~----~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 604 MVTQGLEYFHSMEE----KYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hHHHHHHHHHHHHH----HhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 12222222222221 112222 3468999999999999999999999885333445667777778888899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 423 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 423 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
..++++++.|+++..+..++.+|...|++++|.+..+...+..
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998876643
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.87 E-value=1.8e-19 Score=154.53 Aligned_cols=203 Identities=19% Similarity=0.200 Sum_probs=179.5
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+...+..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999888888887
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
. ..|++++|+..+.+++... |.....+..+|.++...|++++|...+.+++...|++
T Consensus 110 ~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 110 C---------------------QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred H---------------------HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 7 7999999999999999854 4567889999999999999999999999999998875
Q ss_pred ccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhh
Q 012143 323 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 402 (470)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 402 (470)
...+.
T Consensus 169 ~~~~~--------------------------------------------------------------------------- 173 (234)
T TIGR02521 169 PESLL--------------------------------------------------------------------------- 173 (234)
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 43222
Q ss_pred hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 403 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 403 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+...+|
T Consensus 174 ---~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 174 ---ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 2334677788889999999999998888899999999999999999999999888776643
No 53
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=2.1e-17 Score=165.34 Aligned_cols=390 Identities=12% Similarity=0.070 Sum_probs=285.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCcc--hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh
Q 012143 14 KINKLGKCRSRISSKMDSALEFGVDADG--DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 91 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 91 (470)
.+.+.|+.+++. ..++...+.+.-... .+..+-.. +...|...+|...++.... | +...+..+-..+...|++
T Consensus 379 ~l~r~G~l~eAl-~Lfd~M~~~gvv~~~~v~~~~li~~-~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 379 RLLRDGRIKDCI-DLLEDMEKRGLLDMDKIYHAKFFKA-CKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHCcCHHHHH-HHHHHHHhCCCCCchHHHHHHHHHH-HHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCH
Confidence 345668889998 777777665432222 22223334 5677889999998887643 4 567888888899999999
Q ss_pred hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc-cchHHHH
Q 012143 92 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWN 170 (470)
Q Consensus 92 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~ 170 (470)
++|...|+++.+....+ +.. .+..+... +.+.|++++|..+|+++..... .+...|.
T Consensus 454 e~A~~lf~~M~~~Gl~p-------D~~----tynsLI~~-----------y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKA-------DCK----LYTTLIST-----------CAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred HHHHHHHHHHHHcCCCC-------CHH----HHHHHHHH-----------HHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999988764332 111 11111111 3467888999999999987653 3678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChHHHHHHHHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK----DQNHPAALINYAALL 244 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~ 244 (470)
.+...|.+.|++++|+..|++.... .| +...|..+...+.+.|++++|.+.|.++... .|+ ...+..+...+
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay 589 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence 9999999999999999999998764 34 4678999999999999999999999998753 343 44555555555
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCC
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPN 321 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~ 321 (470)
. +.|++++|.++|+++.+.+ +.+...|..+...|.+.|++++|...|+++.+. .|+
T Consensus 590 ~---------------------k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 590 A---------------------NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred H---------------------HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 4 7999999999999999876 446889999999999999999999999999876 344
Q ss_pred cccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc---c
Q 012143 322 CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---K 398 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 398 (470)
. ..+...+.. .......+. +...+........ ..+...|..+...|.+.|++++|...|..... .
T Consensus 649 ~--~TynsLI~a----~~k~G~~ee---A~~l~~eM~k~G~---~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 649 E--VFFSALVDV----AGHAGDLDK---AFEILQDARKQGI---KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred H--HHHHHHHHH----HHhCCCHHH---HHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 2 122211111 111122222 2222222222221 23456899999999999999999999988543 2
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+...|..+...|.+.|++++|+++|++.... .| +...|..+...+.+.|+.++|...|.++++...
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 34466889999999999999999999998764 45 456777788899999999999999999987543
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.86 E-value=1.3e-19 Score=149.66 Aligned_cols=265 Identities=17% Similarity=0.129 Sum_probs=203.0
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---H------------HHHHHHHHHHHc
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---D------------CIGNLGIAYFQS 213 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~------------~~~~la~~~~~~ 213 (470)
.-|+.-+.++++..|+...+....|.+++++|++++|...|+.++..+|++. + .+......+...
T Consensus 89 k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 89 KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS 168 (504)
T ss_pred ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 4444444455555666666677777777777777777777777777777432 1 223334445668
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
|+...|++.....+++.|-+...+...+.+|. ..|++..|+.-++.+-++..++.+.++
T Consensus 169 GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i---------------------~~~e~k~AI~Dlk~askLs~DnTe~~y 227 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQPWDASLRQARAKCYI---------------------AEGEPKKAIHDLKQASKLSQDNTEGHY 227 (504)
T ss_pred CchhhHHHHHHHHHhcCcchhHHHHHHHHHHH---------------------hcCcHHHHHHHHHHHHhccccchHHHH
Confidence 99999999999999999998888877777776 799999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHH
Q 012143 294 NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 373 (470)
Q Consensus 294 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (470)
.++.+++..|+.+.++...+.+++++|++...+-..- .+....+ ..
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YK--klkKv~K--------------------------------~l 273 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYK--KLKKVVK--------------------------------SL 273 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHH--HHHHHHH--------------------------------HH
Confidence 9999999999999999999999999999765432110 0110000 01
Q ss_pred HHHHHHhccccHHHHHHHHHHHhcchhhh------hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012143 374 GFAAVQKTHHEVAAAFETEENELSKMEEC------AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 447 (470)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 447 (470)
.-+......++|.++++..++.+...+.. ..-.+..|+...+++.+|+..+.+++..+|+++.++...|..|..
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 11223345678888888888877654442 233666788999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhhccC
Q 012143 448 TGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 448 ~g~~~~A~~~~~~al~~~~~~ 468 (470)
...|+.|+..|++|.++-++.
T Consensus 354 dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999987654
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.1e-19 Score=149.77 Aligned_cols=328 Identities=13% Similarity=0.054 Sum_probs=219.8
Q ss_pred HHHhcCCCCcchhh---hcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 31 SALEFGVDADGDQS---GLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 31 ~~l~~~p~~~~~~~---~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
.++...|.++..|. ..+.+ +........+..++-.-...-|+|.+.+..+|.+++..|++++|+..|+++..++|.
T Consensus 186 ~~~~~~~~~dwls~wika~Aq~-~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 186 HAATVPDHFDWLSKWIKALAQM-FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred hheecCCCccHHHHHHHHHHHH-HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 33444555544333 23333 334444445555666667778899999999999999999999999999998888655
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHH
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 187 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 187 (470)
.- .....+ +.+ +-..|++++-.......+..+.....-|+.-+...+..+++..|+.
T Consensus 265 ~i---------~~MD~Y---a~L-----------L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 265 NV---------EAMDLY---AVL-----------LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALN 321 (564)
T ss_pred hh---------hhHHHH---HHH-----------HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHH
Confidence 32 111111 111 1234555666666666666665666666666777777777777777
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 188 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
+-+++|+.+|.+..++...|.++...|+.++|+-.|+.+..+.|.....+..+..+|. .
T Consensus 322 ~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL---------------------A 380 (564)
T KOG1174|consen 322 FVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL---------------------A 380 (564)
T ss_pred HHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH---------------------h
Confidence 7777777777777777777777777777777777777777777777776666666665 4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHH-HcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchH
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLA-NAYY-LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 345 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (470)
.|++.+|.-.-+.+++.-|.++.++..+| .++. .-.--++|.+.+++++++.|....
T Consensus 381 ~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~--------------------- 439 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP--------------------- 439 (564)
T ss_pred hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH---------------------
Confidence 67777777777777777777777776665 3332 222345677777777777776432
Q ss_pred HhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh-hhHhhHHHHHHHhccHHHHHHHH
Q 012143 346 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE-CAGAGESAFLDQASAVNVAKECL 424 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~ 424 (470)
+...++.++...|.+..++..+++.+...+. ..+..+|.++...+.+++|...|
T Consensus 440 -------------------------AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 440 -------------------------AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred -------------------------HHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344555666667777777777776554433 45668888889999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcC
Q 012143 425 LAALKADPKAAHIWANLANAYYLTG 449 (470)
Q Consensus 425 ~~al~~~p~~~~~~~~la~~~~~~g 449 (470)
..|+.++|++..+...+-.+-....
T Consensus 495 ~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 495 YKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHhcCccchHHHHHHHHHHhccC
Confidence 9999999999887777666544433
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=4e-19 Score=139.20 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
..+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
..|++++|...|++++.. .|..+.++.++|.|..+.|+++.|..+|+++++.+|+++
T Consensus 115 ---------------------~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 115 ---------------------AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred ---------------------hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 689999999999999974 345678999999999999999999999999999999976
Q ss_pred cH
Q 012143 324 ST 325 (470)
Q Consensus 324 ~~ 325 (470)
..
T Consensus 174 ~~ 175 (250)
T COG3063 174 PA 175 (250)
T ss_pred hH
Confidence 53
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=1.3e-19 Score=141.95 Aligned_cols=204 Identities=21% Similarity=0.240 Sum_probs=154.3
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHH
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 121 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 121 (470)
+...+|.. ++..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++|+++
T Consensus 37 arlqLal~-YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----------------- 98 (250)
T COG3063 37 ARLQLALG-YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----------------- 98 (250)
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----------------
Confidence 44566666 777777777777777777777777777777777777777777776666666655
Q ss_pred HHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CCCC
Q 012143 122 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNN 199 (470)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 199 (470)
+|++.+++.+.|..++.+|++++|...|++++.. .|..
T Consensus 99 ----------------------------------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~ 138 (250)
T COG3063 99 ----------------------------------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP 138 (250)
T ss_pred ----------------------------------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCc
Confidence 6677778888888888888888888888888763 3455
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
+.++-++|.|..+.|+++.|.+.|+++++.+|+.+.....++..++ ..|++..|..+++
T Consensus 139 s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~---------------------~~~~y~~Ar~~~~ 197 (250)
T COG3063 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY---------------------KAGDYAPARLYLE 197 (250)
T ss_pred chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH---------------------hcccchHHHHHHH
Confidence 6778888888888888888888888888888888888877777776 6788888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 280 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 280 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
+.....+-....+.....+-...|+-+.+-.+=.+.....|....
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 877777777777777777788888888777777777777777543
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1e-19 Score=149.43 Aligned_cols=225 Identities=12% Similarity=0.056 Sum_probs=131.6
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
|-+.+|.+.++..+...|. ++.+..++.+|.+..++..|+..|.+.++..|.+...+...+.++..++++++|.++|+.
T Consensus 237 gm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred cChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 3345555555555554432 445555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 305 (470)
+++.+|.+.++.-.++..|+ -.++++-|+.+|++.+++.-.+++.+.++|.|++..+++
T Consensus 316 vlk~~~~nvEaiAcia~~yf---------------------Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYF---------------------YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHhcCCccceeeeeeeeccc---------------------cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 55555555554433333333 345555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccH
Q 012143 306 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEV 385 (470)
Q Consensus 306 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (470)
+-++..|++++......
T Consensus 375 D~~L~sf~RAlstat~~--------------------------------------------------------------- 391 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQP--------------------------------------------------------------- 391 (478)
T ss_pred hhhHHHHHHHHhhccCc---------------------------------------------------------------
Confidence 55555555555433221
Q ss_pred HHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 386 AAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
....++|+++|.+..-.|++.-|..+|+-++..+|++.+++.+||.+-.+.|+.++|..++..|-.+.
T Consensus 392 ------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 392 ------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 11124566666666666777777778888888888888888888888888888888888887777666
Q ss_pred cc
Q 012143 466 CS 467 (470)
Q Consensus 466 ~~ 467 (470)
|.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 53
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=8.6e-19 Score=161.34 Aligned_cols=270 Identities=10% Similarity=0.014 Sum_probs=214.3
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCCh-hHHHHHHHHHHH
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA-HAHFLLGLMYQR 87 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~ 87 (470)
-.+|......|++..|. ..+.++.+..|+....+...|.. ....|+++.|...+.++.+..|++. .+....+.++..
T Consensus 88 ~~~glla~~~g~~~~A~-~~l~~~~~~~~~~~~~~llaA~a-a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAE-KLIAKNADHAAEPVLNLIKAAEA-AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCCHHHHH-HHHHHHhhcCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 34566777889999999 89999999989888888888999 9999999999999999999999886 567778999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV 167 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 167 (470)
.|++++|...+++.++..|++. .. +...+.+ +...|++++|++.+.+..+..+.++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~------~~------l~ll~~~-----------~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHK------EV------LKLAEEA-----------YIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCH------HH------HHHHHHH-----------HHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999987752 22 1222222 46788899999999999976544333
Q ss_pred HH----HHHHHHHHHcCChHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 168 VW----NTLGLILLKSGRLQSSISVLSSLLAVDP----NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 168 ~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
.. .....-+...+..+++.+.+.++....| +++..+..++..+...|++++|.+.++++++..|++....+.
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 22 1222223445555666778888888777 589999999999999999999999999999999988753211
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCChhHHHHHHH--HH
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA--HIWANLANAYYLTGDHRSSGKCLE--KA 315 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~a 315 (470)
+...+. ....++.+.+++.++++++..|+++ .....+|.++++.|++++|.++|+ .+
T Consensus 303 ~l~~~~-------------------~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 303 LCLPIP-------------------RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHhh-------------------hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 111111 1145778999999999999999999 889999999999999999999999 57
Q ss_pred HhcCCCc
Q 012143 316 AKLEPNC 322 (470)
Q Consensus 316 ~~~~p~~ 322 (470)
++..|+.
T Consensus 364 ~~~~p~~ 370 (409)
T TIGR00540 364 CKEQLDA 370 (409)
T ss_pred hhcCCCH
Confidence 7788874
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.86 E-value=3.1e-19 Score=153.05 Aligned_cols=202 Identities=19% Similarity=0.201 Sum_probs=154.9
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
+.++..+|.++...|++++|+..++++++..|... ..+..++.+ +...|++++|+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~~la~~-----------~~~~~~~~~A~~~ 87 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY------------LAYLALALY-----------YQQLGELEKAEDS 87 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------------HHHHHHHHH-----------HHHcCCHHHHHHH
Confidence 45666666666666666666666666666544321 112222222 2344555666666
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD--PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+++++...|.++.++..+|.++...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++..+|.
T Consensus 88 ~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 88 FRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 666676777778888899999999999999999999998753 455678888999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
++..+..++.++. ..|++++|+..+++++...|.++..+..++.++...|+.++|..+.
T Consensus 168 ~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 168 RPESLLELAELYY---------------------LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred ChHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888887777776 6899999999999999988888888888999999999999999888
Q ss_pred HHHHhcCC
Q 012143 313 EKAAKLEP 320 (470)
Q Consensus 313 ~~a~~~~p 320 (470)
+.+....|
T Consensus 227 ~~~~~~~~ 234 (234)
T TIGR02521 227 AQLQKLFP 234 (234)
T ss_pred HHHHhhCc
Confidence 87766543
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.8e-20 Score=157.40 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=232.0
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+++..+|.+|+..+..++...|+++..|.+.+.+++..|++++|....++.+++.|..+..+...+.++..+++..+|.+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHH------------hhCCCCh--HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 222 CFQDLI------------LKDQNHP--AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 222 ~~~~~l------------~~~p~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++..- .+-|.+. ++. ...-...+.|+...|++++|...--..+++++.
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac-----------------~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~ 201 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPAC-----------------FKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT 201 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchh-----------------hHHHHhhhhhhhhcccchhHHHHHHHHHhcccc
Confidence 776211 0011111 000 111122356777899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCC
Q 012143 288 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 367 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (470)
+.++++..|.+++..++.+.|+..|++++.++|+....-..... +.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~----------------------------------~k 247 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM----------------------------------PK 247 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh----------------------------------HH
Confidence 99999999999999999999999999999999997654332111 11
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh------hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHH
Q 012143 368 PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 441 (470)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 441 (470)
.-..|-..|+-..+.|++..|.+.|..++...|. ..+.+.+.+..++|+..+|+..++.++.++|....++...
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 2246778889999999999999999998774433 4477999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 442 ANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 442 a~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|.|+..+++|++|++.|+++++.-.+
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999987654
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.85 E-value=4.9e-18 Score=151.91 Aligned_cols=377 Identities=13% Similarity=0.116 Sum_probs=233.9
Q ss_pred hhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHH
Q 012143 43 QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 122 (470)
++....- .+..++|....+..+.+++..|.+++.+...|..+...|+-++|....+.+++.++.+ ..
T Consensus 10 lF~~~lk-~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S------------~v 76 (700)
T KOG1156|consen 10 LFRRALK-CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS------------HV 76 (700)
T ss_pred HHHHHHH-HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc------------ch
Confidence 3444444 6677888888888888898899999999999999999999999999888888865443 24
Q ss_pred HhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH
Q 012143 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 202 (470)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 202 (470)
+|+.+|.++ ....+|++|+++|+.++..+|+|..+|..++.+..++++++-....-.+.++..|.....
T Consensus 77 CwHv~gl~~-----------R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~ 145 (700)
T KOG1156|consen 77 CWHVLGLLQ-----------RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS 145 (700)
T ss_pred hHHHHHHHH-----------hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH
Confidence 666777654 355677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKD---QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
|+..+..+...|++..|....+...... |+....-......+. ..+..+.|.+++|.+.+.
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~----------------n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ----------------NQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH----------------HHHHHHcccHHHHHHHHH
Confidence 9999999999999999999888877654 333222222222222 223334455555554444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHH--HHhhhcc-----------Cc---
Q 012143 280 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI--KDAERSQ-----------EP--- 343 (470)
Q Consensus 280 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~--~~~~~~~-----------~~--- 343 (470)
.--..--+........+.++.+++++++|...|...+..+|++...+..+-.+.. ....... ..
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 3322222233334444555555555555555555555555555443332211110 0000000 00
Q ss_pred ----------hHHhhhhH-HHHHHHhhcCCCCCCCcHHHHHHHHHHHhcccc---HHHHHHHHHHHhcch----------
Q 012143 344 ----------TEQLSWAG-NEMASILREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELSKM---------- 399 (470)
Q Consensus 344 ----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---------- 399 (470)
.+.+.... ..+...+..+. |.+...+-..|....+ .++-+..|...+.+.
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~------p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGV------PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCC------CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 00000000 01111111111 1122222222222111 122222333322211
Q ss_pred --hh--h--hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 400 --EE--C--AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 400 --~~--~--~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
++ - .++.++.-+...|+++.|..+...|+...|.-++.+...|+++...|+.++|..+++.+-++-
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 11 1 234666677778888888888888888888888888888888888888888888888777653
No 63
>PLN02789 farnesyltranstransferase
Probab=99.85 E-value=1.3e-18 Score=151.42 Aligned_cols=163 Identities=14% Similarity=0.086 Sum_probs=141.7
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCH--HHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM--EQSAKC 222 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~ 222 (470)
++.++|+..+.+++..+|.+..+|..++.++..+| .+++++..++++++.+|++..+|...+.++...|+. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 45589999999999999999999999999999998 679999999999999999999999999999888874 778999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
++++++.+|.+..+|...+.++. ..|+++++++++.++++.+|.+..+|..++.+....
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~---------------------~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLR---------------------TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999988887 578899999999999999999999999999888776
Q ss_pred ---CCh----hHHHHHHHHHHhcCCCcccHHHHH
Q 012143 303 ---GDH----RSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 303 ---g~~----~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
|.+ ++++.+..+++..+|++..+|..+
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl 223 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYL 223 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHH
Confidence 333 467888889999999887766544
No 64
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.4e-19 Score=150.20 Aligned_cols=281 Identities=15% Similarity=0.112 Sum_probs=229.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 88 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 88 (470)
..+|+.+.+..+|.+++ ..+..+++..|+++..|...+.. +...+++++|.-..++.++.+|..+..+...+.++...
T Consensus 53 k~~gn~~yk~k~Y~nal-~~yt~Ai~~~pd~a~yy~nRAa~-~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNAL-KNYTFAIDMCPDNASYYSNRAAT-LMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHH-HHHHHHHHhCccchhhhchhHHH-HHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 34677889999999999 99999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHH-----HHHhhhhccc---chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 89 GQPLKAVSSYEKAE-----EILLRCEADI---ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 89 g~~~~A~~~~~~al-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
++..+|...|+..- ...|.-+... ..+........+. +.+ +...|++++|...--..++
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lk--a~c-----------l~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLK--AEC-----------LAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhh--hhh-----------hhhcccchhHHHHHHHHHh
Confidence 99988887776321 0001100000 0000001111111 112 3456778999999999999
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------------DCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.++.+.++++..|.++...++.+.|+..|++++.++|+.. ..+...|.-.++.|++..|.+.|..+|.
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999864 3577888999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 308 (470)
++|++.... +.+|.. .+.+..+.|+..+|+...+.+++++|....++...|.++..+++|++|
T Consensus 278 idP~n~~~n---aklY~n--------------ra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 278 IDPSNKKTN---AKLYGN--------------RALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred CCccccchh---HHHHHH--------------hHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876432 222221 234445899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 012143 309 GKCLEKAAKLEPN 321 (470)
Q Consensus 309 ~~~~~~a~~~~p~ 321 (470)
++.|+++++...+
T Consensus 341 V~d~~~a~q~~~s 353 (486)
T KOG0550|consen 341 VEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHhhccc
Confidence 9999999998766
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3e-19 Score=151.12 Aligned_cols=271 Identities=13% Similarity=0.046 Sum_probs=175.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 91 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 91 (470)
|+.++..|+..+++ ..|+++..++|....+.-..|.. +...|++++-.......+..+.....-|+.-|...+...++
T Consensus 239 ak~~~~~Gdn~~a~-~~Fe~~~~~dpy~i~~MD~Ya~L-L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAE-DIFSSTLCANPDNVEAMDLYAVL-LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred hhhhhhhcCchHHH-HHHHHHhhCChhhhhhHHHHHHH-HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence 45555566666666 56666666666665555555555 55666666666655555555555555566566666666666
Q ss_pred hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHH
Q 012143 92 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 171 (470)
Q Consensus 92 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 171 (470)
..|+.+-+++++.+|++- +.+ ...|.+ ++..|+.++|+-.|+.+..+.|.+-++|..
T Consensus 317 ~rAL~~~eK~I~~~~r~~-----~al-------ilKG~l-----------L~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNH-----EAL-------ILKGRL-----------LIALERHTQAVIAFRTAQMLAPYRLEIYRG 373 (564)
T ss_pred HHHHHHHHHHhccCcccc-----hHH-------HhccHH-----------HHhccchHHHHHHHHHHHhcchhhHHHHHH
Confidence 666666666666554431 111 111111 234444566666666666666666666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG-IAY-FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la-~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
+-.+|...|++.+|...-+.++..-|.+..++..+| .++ ....--++|.+.++++++++|....+...++.++.
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~---- 449 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ---- 449 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH----
Confidence 666666666666666666666666666666665554 222 22333456666666666666666666666665555
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
..|.+++++..+++.+...|+ ...+..||.++...+.+++|+.+|..++.++|++..+..++
T Consensus 450 -----------------~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 450 -----------------VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred -----------------hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 799999999999999999887 67899999999999999999999999999999987666544
No 66
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.84 E-value=1.2e-16 Score=159.91 Aligned_cols=356 Identities=11% Similarity=0.024 Sum_probs=259.7
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCC-CChhHHHHHHHHHHHhCChhH
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMP-KNAHAHFLLGLMYQRLGQPLK 93 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~ 93 (470)
+.+.|...++. ..+..... | +...|..+-.. +...|+++.|...|.++.+... .+...+..+...|.+.|++++
T Consensus 416 ~~~~g~~~eAl-~lf~~M~~--p-d~~Tyn~LL~a-~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 416 CKKQRAVKEAF-RFAKLIRN--P-TLSTFNMLMSV-CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHCCCHHHHH-HHHHHcCC--C-CHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 45667788887 55544433 4 44566666666 7888999999999999887653 357788999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC-ccchHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD-TRQAVVWNTL 172 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 172 (470)
|...|+++.+.... |+.. .|..+... +.+.|++++|+..|.++.... ..+...|..+
T Consensus 491 A~~vf~eM~~~Gv~-------Pdvv----TynaLI~g-----------y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 491 MFEVFHEMVNAGVE-------ANVH----TFGALIDG-----------CARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred HHHHHHHHHHcCCC-------CCHH----HHHHHHHH-----------HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999998875332 2221 12222222 346678899999999987643 2346788899
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhh
Q 012143 173 GLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCK 247 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~ 247 (470)
...+.+.|++++|.+.|.+.... .|+ ...+..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...+.
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-- 625 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-- 625 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH--
Confidence 99999999999999999998753 443 5788889999999999999999999998876 456677777777776
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc-cc
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC-MS 324 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~ 324 (470)
+.|++++|+.+|.++.+. .|+ ...|..+...+.+.|++++|...++.+.+..... ..
T Consensus 626 -------------------k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 626 -------------------QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred -------------------hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 799999999999998876 454 7788999999999999999999999998765322 22
Q ss_pred HHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc---chhh
Q 012143 325 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEE 401 (470)
Q Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~ 401 (470)
.+..+.. .+. .....+.....+..+ ... ... .+...|..+...+.+.|++++|++.+..... ..+.
T Consensus 686 tynsLI~-ay~----k~G~~eeA~~lf~eM---~~~--g~~-PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 686 SYSSLMG-ACS----NAKNWKKALELYEDI---KSI--KLR-PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHHHHH-HHH----hCCCHHHHHHHHHHH---HHc--CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 2222221 111 112222222222222 111 122 2456899999999999999999999997443 2233
Q ss_pred hhHhhHHHHHHHhccHHHHHHHHHHHHhcC
Q 012143 402 CAGAGESAFLDQASAVNVAKECLLAALKAD 431 (470)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 431 (470)
..+..+...+.+.|++++|..++.++++..
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 456677788999999999999999998853
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.84 E-value=7.9e-17 Score=144.33 Aligned_cols=403 Identities=13% Similarity=0.078 Sum_probs=295.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 91 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 91 (470)
....++.+.|.... ...+..|...|++.+.....|.. +...|+-++|.......+..++.+...|+.+|.++....+|
T Consensus 14 ~lk~yE~kQYkkgL-K~~~~iL~k~~eHgeslAmkGL~-L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 14 ALKCYETKQYKKGL-KLIKQILKKFPEHGESLAMKGLT-LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHHhHH-HHHHHHHHhCCccchhHHhccch-hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence 34567888999998 88999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHH
Q 012143 92 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 171 (470)
Q Consensus 92 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 171 (470)
++|+.+|+.|+.+.|++. .+++.++.+. .+.++++-....-.+.++..|..-..|..
T Consensus 92 ~eaiKcy~nAl~~~~dN~------------qilrDlslLQ-----------~QmRd~~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 92 DEAIKCYRNALKIEKDNL------------QILRDLSLLQ-----------IQMRDYEGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred HHHHHHHHHHHhcCCCcH------------HHHHHHHHHH-----------HHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999999987753 3444455443 34566688888888999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcC---CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVD---PNN-----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~---~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.+..+...|++..|....+...+.. |+. ..+......+....|.+++|.+.+..--. .....++..
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~------~i~Dkla~~ 222 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK------QIVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh------HHHHHHHHh
Confidence 9999999999999999988877654 332 23555666777888888888877765322 222223322
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHhcCCCc
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG-KCLEKAAKLEPNC 322 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~p~~ 322 (470)
.. .+.++.+.+++++|+..|...+..+|++...+..+-.++..-.+.-+++ ..|...-+..|..
T Consensus 223 e~---------------ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 223 ET---------------KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hh---------------HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 22 3556668999999999999999999999999998888886444444555 5565555544443
Q ss_pred ccHHH-HHHH-----------HHHH---------------HhhhccCchHHhhhhHHHHHHHhhcCCCC--------CCC
Q 012143 323 MSTRY-AVAV-----------SRIK---------------DAERSQEPTEQLSWAGNEMASILREGDPV--------QIE 367 (470)
Q Consensus 323 ~~~~~-~l~~-----------~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 367 (470)
..... .+.. ..+. ..........-+......+...+...... .|.
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 22111 0000 0000 00111111111112222222222222111 133
Q ss_pred cHH--HHHHHHHHHhccccHHHHHHHHHHHhcchhh--hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012143 368 PPI--AWAGFAAVQKTHHEVAAAFETEENELSKMEE--CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN 443 (470)
Q Consensus 368 ~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 443 (470)
.+. .++.++..+...|+++.|......+++..|. +.+..-|.++...|++++|..+++.+.+++-.+..+-..-|.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 333 4467888899999999999999999885544 667788999999999999999999999998766666556788
Q ss_pred HHHHcCChHHHHHHHHH
Q 012143 444 AYYLTGDHRSSGKCLEK 460 (470)
Q Consensus 444 ~~~~~g~~~~A~~~~~~ 460 (470)
-..+.++.++|.+...+
T Consensus 448 YmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHccccHHHHHHHHH
Confidence 88889999999887654
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=7.7e-20 Score=150.09 Aligned_cols=240 Identities=17% Similarity=0.223 Sum_probs=197.3
Q ss_pred hcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHh
Q 012143 45 GLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH 124 (470)
Q Consensus 45 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 124 (470)
.+|.+ ++..|-+.+|.+.|+..++..| .++.+..|+.+|.+..++..|+..|.+.++..|.+-. -....++++
T Consensus 228 Q~gkC-ylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT-----~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKC-YLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT-----YLLGQARIH 300 (478)
T ss_pred HHHHH-HHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh-----hhhhhHHHH
Confidence 68888 8888889999999988888666 4788888899999999999999999998888776532 223333333
Q ss_pred hhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHH
Q 012143 125 HAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG 204 (470)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 204 (470)
. ..++.++|+++|+.+++.+|.+.++.--+|.-|+-.++++-|+.+|++.+++.-.+++.+.
T Consensus 301 e------------------am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~ 362 (478)
T KOG1129|consen 301 E------------------AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFC 362 (478)
T ss_pred H------------------HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHh
Confidence 2 3355688999999999999999888888888888899999999999999999888899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHH
Q 012143 205 NLGIAYFQSGDMEQSAKCFQDLILKDQ---NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
++|.|.+..++++-++..|++++.... .-.+.|+++|.+.. ..|++.-|..+|+-+
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV---------------------~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV---------------------TIGDFNLAKRCFRLA 421 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE---------------------eccchHHHHHHHHHH
Confidence 999999999999999999999886543 33567888888877 588899999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 282 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 282 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
+..+|++.+++.+||.+-.+.|+.++|..++..+....|+-....++++
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999999999999999999998888888766655543
No 69
>PLN02789 farnesyltranstransferase
Probab=99.83 E-value=6.6e-19 Score=153.33 Aligned_cols=214 Identities=16% Similarity=0.143 Sum_probs=177.9
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 129 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (470)
+...+..++|...+.++++++|.+..+|..+|.++...| ++++++..+++++..+|++. .+|+..+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------------qaW~~R~~ 114 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------------QIWHHRRW 114 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch------------HHhHHHHH
Confidence 555677889999999999999999999999999999988 57999999999999877652 23444444
Q ss_pred cccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 130 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
++..++. ...++++.++.++++.+|.+..+|..++.++...|++++|++++.++++.+|.+..+|..++.+
T Consensus 115 ~l~~l~~---------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 115 LAEKLGP---------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred HHHHcCc---------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 3333332 1136789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc---CCH----HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 210 YFQS---GDM----EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 210 ~~~~---g~~----~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
.... |.+ ++++.+..+++..+|++..+|..++.++..... ..++..+|++.+.+++
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~-----------------~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE-----------------ALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-----------------ccccchhHHHHHHHhh
Confidence 8776 333 578888999999999999999999988863100 1356678999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHc
Q 012143 283 KADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~ 302 (470)
...|.++.++..|+.+|...
T Consensus 249 ~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 249 SKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccCCcHHHHHHHHHHHHhh
Confidence 99999999999999999864
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=9.7e-18 Score=153.49 Aligned_cols=265 Identities=10% Similarity=0.069 Sum_probs=198.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhH-HHHHHHHHHH
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHA-HFLLGLMYQR 87 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~ 87 (470)
..+|......|++..+. ..+.+..+. ++++..++.++.......|+++.|...+.++.+.+|++..+ ....+.++..
T Consensus 88 ~~~gl~a~~eGd~~~A~-k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 88 TEQALLKLAEGDYQQVE-KLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHhCCCHHHHH-HHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34666667779998887 555554443 22345555554441699999999999999999999998644 4455999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV 167 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 167 (470)
.|++++|+..++++.+..|++. ... ..++.+ +...|++++|+..+.+..+..+.++.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~------~al------~ll~~~-----------~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHP------EVL------RLAEQA-----------YIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCH------HHH------HHHHHH-----------HHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999987753 222 111111 46778999999999888877655433
Q ss_pred H--------HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 168 V--------WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 168 ~--------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
. +..+........+-+...+.++..-+..|+++.+...++..+...|+.++|...++++++. |.++.....
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l 301 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLL 301 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHH
Confidence 2 2222222223334444555555554556789999999999999999999999999999994 445544333
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
++.+ ..++++++++.+++.++.+|+++..+..+|.++...|++++|..+|+++++..
T Consensus 302 ~~~l-----------------------~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 302 IPRL-----------------------KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred Hhhc-----------------------cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3332 35899999999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 012143 320 PNC 322 (470)
Q Consensus 320 p~~ 322 (470)
|++
T Consensus 359 P~~ 361 (398)
T PRK10747 359 PDA 361 (398)
T ss_pred CCH
Confidence 984
No 71
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.83 E-value=1.3e-18 Score=162.38 Aligned_cols=365 Identities=16% Similarity=0.118 Sum_probs=271.3
Q ss_pred hcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccc
Q 012143 54 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 133 (470)
Q Consensus 54 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (470)
..+...|...|-++++++|..+.++..||.+|..-.+...|..+|++|.++++.+... +...+.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea------------aaa~ad---- 534 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA------------AAASAD---- 534 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh------------HHHHHH----
Confidence 4457889999999999999999999999999999999999999999999998764221 111111
Q ss_pred cCCCccccccCcccHHHHHHHHHHhhhcCccc--hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012143 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF 211 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 211 (470)
.+.+..+++.|....-.+-+..|-. ...|..+|-.|...++...|+..|+.+++.+|.+..+|..+|.+|.
T Consensus 535 -------tyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~ 607 (1238)
T KOG1127|consen 535 -------TYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP 607 (1238)
T ss_pred -------HhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 1456777899999987777777644 3467779999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC---
Q 012143 212 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--- 288 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--- 288 (470)
..|++..|++.|.++..++|.+....+..+.+.. ..|+|.+|+..+...+......
T Consensus 608 ~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec---------------------d~GkYkeald~l~~ii~~~s~e~~~ 666 (1238)
T KOG1127|consen 608 ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC---------------------DNGKYKEALDALGLIIYAFSLERTG 666 (1238)
T ss_pred hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888877776665 6999999999999988765543
Q ss_pred ----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--------CCcccHHHHHHHHH-HHHhhh----------------
Q 012143 289 ----AHIWANLANAYYLTGDHRSSGKCLEKAAKLE--------PNCMSTRYAVAVSR-IKDAER---------------- 339 (470)
Q Consensus 289 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~-~~~~~~---------------- 339 (470)
.+.+..++..+...|=..+|..++++.++.. -++...|..++... +--...
T Consensus 667 q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~ 746 (1238)
T KOG1127|consen 667 QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQL 746 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 4445555555555666667777776665431 12222222221100 000000
Q ss_pred ----ccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc--------cccHHHHHHHHHHHhc--chhhhhHh
Q 012143 340 ----SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT--------HHEVAAAFETEENELS--KMEECAGA 405 (470)
Q Consensus 340 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~--~~~~~~~~ 405 (470)
.....+-+.-+.+.....+.. ...+..|+++|..|.+ +.+...|+..+++.+. ..+...|.
T Consensus 747 e~~~~l~~~d~l~Lg~~c~~~hlsl-----~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~Wn 821 (1238)
T KOG1127|consen 747 EKTGALKKNDLLFLGYECGIAHLSL-----AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWN 821 (1238)
T ss_pred HhcccCcchhHHHHHHHHhhHHHHH-----hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHH
Confidence 000001000111111111111 1235679999988765 2244588899988554 66667899
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 406 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 406 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
.+|.+ ...|.+.-|..+|-+.+...|.+...|.++|.++....|++.|...|.++..+.|..
T Consensus 822 aLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 822 ALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred HHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence 99988 667899999999999999999999999999999999999999999999999887753
No 72
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=4.2e-16 Score=134.67 Aligned_cols=421 Identities=12% Similarity=0.057 Sum_probs=289.6
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHH
Q 012143 17 KLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 96 (470)
Q Consensus 17 ~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 96 (470)
++..++..-...|+..|..+--+...|...|.. -..++++..|...|++++..+..+...|...+.+-++......|..
T Consensus 50 EL~eYq~RkRkefEd~irrnR~~~~~WikYaqw-Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARN 128 (677)
T KOG1915|consen 50 ELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQW-EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARN 128 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHH
Confidence 444454444356777777777788889888888 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHH
Q 012143 97 SYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLIL 176 (470)
Q Consensus 97 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 176 (470)
.+++|+.+.|.-+ ..|+....+-. ..|+..-|.++|++-+.-.|+ ..+|......-
T Consensus 129 v~dRAvt~lPRVd------------qlWyKY~ymEE-----------~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fE 184 (677)
T KOG1915|consen 129 VWDRAVTILPRVD------------QLWYKYIYMEE-----------MLGNIAGARQIFERWMEWEPD-EQAWLSFIKFE 184 (677)
T ss_pred HHHHHHHhcchHH------------HHHHHHHHHHH-----------HhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Confidence 9999999876531 22333322222 234558888888888888776 46777777777
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH-HHHHHHHHHhhhccccccc
Q 012143 177 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA-LINYAALLLCKYGSVLAGA 255 (470)
Q Consensus 177 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~~~~~~~~~ 255 (470)
.+.+..+.|...|++.+-.+|+ ...|...+..-.+.|+...|...|+++++.-.++... ..-.+...+.........+
T Consensus 185 lRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa 263 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA 263 (677)
T ss_pred HHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888877765 5677777777778888888888888877654433221 1111111111000000000
Q ss_pred ccchh-----------------hhhHHHhcCC---HHHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 012143 256 GANTG-----------------EGACLDQASA---VNVAK-----ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 256 ~~~~~-----------------~~~~~~~~~~---~~~A~-----~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 310 (470)
...+. .-..-.+-|+ .++++ -.|++.+..+|.+.++|+..-.+-...|+.+.-.+
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 00000 0000011222 22232 24567778899999999999999999999999999
Q ss_pred HHHHHHhcCCCcccH--HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHH
Q 012143 311 CLEKAAKLEPNCMST--RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 388 (470)
Q Consensus 311 ~~~~a~~~~p~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 388 (470)
.|++|+...|....- |.......+.-+.-..-..........-...++..........+.+|...+....++.+...|
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 999999888764321 111111111111111111112222223333444444445557788999999999999999999
Q ss_pred HHHHHHHhcchhhhhHh-hHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 389 FETEENELSKMEECAGA-GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
.+.+-.++...|..-.+ +...+-.++++++.....|++-++-.|.+..+|...|.+-..+|+.+.|...|+-|++
T Consensus 424 RkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 424 RKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 99999988876664433 5556677889999999999999999999999999999999999999999999998875
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=5.1e-17 Score=133.57 Aligned_cols=278 Identities=15% Similarity=0.144 Sum_probs=175.9
Q ss_pred hhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHH
Q 012143 43 QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 122 (470)
-+..|.- +.-.++.++|+..|..+++.+|...+++..||.+|...|..+.|+..-+..++. | +....
T Consensus 38 ~Yv~GlN-fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-p---------dlT~~-- 104 (389)
T COG2956 38 DYVKGLN-FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-P---------DLTFE-- 104 (389)
T ss_pred HHHhHHH-HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-C---------CCchH--
Confidence 3566777 778889999999999999999999999999999999999999999988776653 2 22100
Q ss_pred HhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH
Q 012143 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 202 (470)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 202 (470)
....+...+|.-|+..|-++.|...|....+...--..+
T Consensus 105 -----------------------------------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 105 -----------------------------------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 112345556666666666666666666665544444556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
...|..+|....+|++|++.-++..++.|..... .++..|.. ++..+....+.+.|+..+.+++
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--eIAqfyCE--------------LAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--EIAQFYCE--------------LAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh--HHHHHHHH--------------HHHHHhhhhhHHHHHHHHHHHH
Confidence 6666666666666666666666666665544322 22222221 2233334566666666666666
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
+.+|++..+-..+|.++...|+|+.|++.++.+++.+|+..
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--------------------------------------- 248 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--------------------------------------- 248 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH---------------------------------------
Confidence 66666666666666666666666666666666666666622
Q ss_pred CCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh-hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
+.+...+..+|...|+.++....+........ ..+...++..-....-.+.|..++.+-+...|+--
T Consensus 249 ------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 249 ------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred ------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 23344455556666666666666555444222 23334444444444556677777777777777543
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.82 E-value=1.1e-16 Score=146.20 Aligned_cols=208 Identities=15% Similarity=0.138 Sum_probs=154.2
Q ss_pred CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHH
Q 012143 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 71 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
+|+.+.++..+|.++...|+++.|...+.++....|.+.... ......+.. +...|++++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------e~~~~~a~~-----------~~~~g~~~~ 61 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER---------ERAHVEALS-----------AWIAGDLPK 61 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH---------HHHHHHHHH-----------HHHcCCHHH
Confidence 788888888888888888888888888888887765432110 111111111 235677788
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHcCC----hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKSGR----LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
|...+++++..+|++..++.. +..+...|+ ...+...+......+|.....+..+|.++..+|++++|+..++++
T Consensus 62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 62 ALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred HHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888888877664 555554444 444444444433456677777888888999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHc
Q 012143 227 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA----HIWANLANAYYLT 302 (470)
Q Consensus 227 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~ 302 (470)
++.+|+++..+..++.++. ..|++++|+.++.+++...|..+ ..+..+|.++...
T Consensus 141 l~~~p~~~~~~~~la~i~~---------------------~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLE---------------------MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HhhCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 9999998888888887776 68999999999999998876432 3466789999999
Q ss_pred CChhHHHHHHHHHHhcCC
Q 012143 303 GDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 303 g~~~~A~~~~~~a~~~~p 320 (470)
|++++|+..|++++...|
T Consensus 200 G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999999876665
No 75
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.82 E-value=8.8e-17 Score=158.95 Aligned_cols=385 Identities=12% Similarity=0.098 Sum_probs=276.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCC--CcchhhhcccchhhhhcChhhHHHHHHHHHHh--CCCChhHHHHHHHHHHHhC
Q 012143 14 KINKLGKCRSRISSKMDSALEFGVD--ADGDQSGLGTSSSSREEKVSSLKTGLVHVARK--MPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g 89 (470)
.+...|++.+|+ ..+.......|. +...+..+-.. +...++++.+...+..+.+. .| +...+..+...|.+.|
T Consensus 96 ~l~~~g~~~~Al-~~f~~m~~~~~~~~~~~t~~~ll~a-~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 96 KLVACGRHREAL-ELFEILEAGCPFTLPASTYDALVEA-CIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHcCCCHHHHH-HHHHHHHhcCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCC
Confidence 356678899998 777776654332 44556666666 77888999999999888764 34 5778899999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc--c---
Q 012143 90 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT--R--- 164 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~--- 164 (470)
++++|...|++..+ |+ . ..|..+... +.+.|++++|+..|+++.+..+ +
T Consensus 173 ~~~~A~~lf~~m~~--~~---------~----~t~n~li~~-----------~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 173 MLIDARRLFDEMPE--RN---------L----ASWGTIIGG-----------LVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred CHHHHHHHHhcCCC--CC---------e----eeHHHHHHH-----------HHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 99999999998743 11 1 111111111 3466788999999999876432 1
Q ss_pred -------------------------------chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 012143 165 -------------------------------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 165 -------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 213 (470)
+..++..+...|.+.|++++|...|++. .+.+..+|..+...|.+.
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhC
Confidence 2334556778888899999999998874 445778889999999999
Q ss_pred CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC-CCCHHH
Q 012143 214 GDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAHI 291 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~ 291 (470)
|++++|+..|++..... ..+...+..+...+. +.|++++|.+.+..+++.. +.+..+
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~---------------------~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS---------------------RLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------------------hccchHHHHHHHHHHHHhCCCCCeee
Confidence 99999999998886542 223445555555554 7899999999999998876 456788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHH
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 371 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (470)
+..+...|.+.|++++|...|++..+ | +...|..+...... ....+ .+..-+......+ .. .+...
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~-----~G~~~---~A~~lf~~M~~~g--~~-Pd~~T 428 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGN-----HGRGT---KAVEMFERMIAEG--VA-PNHVT 428 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHH-----cCCHH---HHHHHHHHHHHhC--CC-CCHHH
Confidence 99999999999999999999998764 3 33444433332211 11122 2222222222222 22 23567
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhcc----hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012143 372 WAGFAAVQKTHHEVAAAFETEENELSK----MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 447 (470)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 447 (470)
+..+...+...|..++|...|...... .+...+..+...+.+.|++++|.+.+++.- ..| +..+|..+...+..
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHH
Confidence 888889999999999999999886532 222457788899999999999999998752 334 45679999999999
Q ss_pred cCChHHHHHHHHHHHHhhcc
Q 012143 448 TGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 448 ~g~~~~A~~~~~~al~~~~~ 467 (470)
.|+.+.|...+++.+++.|.
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCC
Confidence 99999999999999887764
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.81 E-value=1e-17 Score=152.85 Aligned_cols=281 Identities=17% Similarity=0.201 Sum_probs=221.5
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCC-CChhHHHHHHHHHHHhCChhHHHHHHH
Q 012143 21 CRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMP-KNAHAHFLLGLMYQRLGQPLKAVSSYE 99 (470)
Q Consensus 21 ~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 99 (470)
..+++ +.++++++.+|.|+.+.+.++.. +..+++++.|....+++++.+| +++.+|..++.++..++++.+|+...+
T Consensus 460 h~ksl-qale~av~~d~~dp~~if~lalq-~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSL-QALEEAVQFDPTDPLVIFYLALQ-YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHH-HHHHHHHhcCCCCchHHHHHHHH-HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 45667 89999999999999999999999 9999999999999999999955 668999999999999999999999999
Q ss_pred HHHHHHhhhhccc---------------chhhhHHHHHHhhhccccccccCCC-----ccccccCcccHHHHHHHHHHhh
Q 012143 100 KAEEILLRCEADI---------------ARPELLSLVQIHHAQCLLPESSGDN-----SLDKELEPEELEEILSKLKESM 159 (470)
Q Consensus 100 ~al~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~~~ 159 (470)
.+++-.|++-... ...........|...--+...+++. .....+..++..+|++.++++.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 9998876631100 0001111111122000000000000 0011223334455555555442
Q ss_pred hc---------------------Cccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 012143 160 QS---------------------DTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 160 ~~---------------------~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 213 (470)
.. .|+. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH
Confidence 21 1111 236778899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH--HHHHHHhcCCCCHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE--CLLAALKADPKAAHI 291 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~ 291 (470)
|++.+|.+.|..++.++|+++.....+|.++. +.|+..-|.. .+..+++++|.++++
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll---------------------e~G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLL---------------------ELGSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH---------------------HhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence 99999999999999999999999999999988 6777777777 999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
|+.+|.++..+|+.++|.++|..++++.+.+|.
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999988774
No 77
>PLN03077 Protein ECB2; Provisional
Probab=99.80 E-value=4.3e-16 Score=157.88 Aligned_cols=382 Identities=11% Similarity=0.062 Sum_probs=236.8
Q ss_pred hhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHH
Q 012143 43 QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 122 (470)
+..+-.. +.+.|+++.|...|+++. ..+...|..+...|.+.|++++|+..|.+....... |+......
T Consensus 225 ~n~Li~~-y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~-------Pd~~ty~~ 293 (857)
T PLN03077 225 VNALITM-YVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVD-------PDLMTITS 293 (857)
T ss_pred HhHHHHH-HhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------CChhHHHH
Confidence 3344444 677899999999999853 345678999999999999999999999998875432 22221111
Q ss_pred HhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH
Q 012143 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
+... ....|+.+.|.+++..+.+.. +.+..++..+...|.+.|++++|...|++.. ..+..
T Consensus 294 ll~a---------------~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~ 355 (857)
T PLN03077 294 VISA---------------CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAV 355 (857)
T ss_pred HHHH---------------HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCee
Confidence 1111 123455677777777666532 2345667777777777777777777777643 23456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhhhc--------------ccccccccchhhhhHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYG--------------SVLAGAGANTGEGACL 265 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 265 (470)
.|..+...|.+.|++++|++.|++.... .|+.... ..+...+..... ........+..+...|
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~-~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI-ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH-HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 6777777777777777777777776543 3443322 111111111000 0001122334455667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCcccHHHHHH-HHHHHHhhhccCc
Q 012143 266 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL-EPNCMSTRYAVA-VSRIKDAERSQEP 343 (470)
Q Consensus 266 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~-~~~~~~~~~~~~~ 343 (470)
.+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|++.... .|+.......+. ....+.......-
T Consensus 435 ~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 789999999999987643 35678899999999999999999999998754 333222111111 0111000000000
Q ss_pred h-------------------HHhh--hhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc---ch
Q 012143 344 T-------------------EQLS--WAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KM 399 (470)
Q Consensus 344 ~-------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 399 (470)
. ..+. ...+.....+... ..+...|..+...|...|+.++|+..|.+... ..
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 0 0000 0011222222222 23566788888888888999999888887443 12
Q ss_pred hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 400 EECAGAGESAFLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
+...+..+-..+.+.|++++|..+|+...+..+ -+...|..+..++.+.|+.++|.+.+++.
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 223455555678888889999999988874332 23467888888889999999998888764
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.80 E-value=2.8e-17 Score=149.34 Aligned_cols=244 Identities=18% Similarity=0.195 Sum_probs=197.0
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-- 230 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-- 230 (470)
..|....+...++..|..+|++++|+..++++++. .|.-......+|.+|..++++++|+..|++++.+-
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666677888999999999999999999999998 55555666679999999999999999999999752
Q ss_pred ---CCC---hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 012143 231 ---QNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKAAHIWANLA 296 (470)
Q Consensus 231 ---p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la 296 (470)
+++ ..++.+|+.+|. ..|++++|..++++++++. |.-...+.+++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~---------------------~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYY---------------------KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHh---------------------ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 333 344555555554 8999999999999998763 33456788899
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHH
Q 012143 297 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 376 (470)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 376 (470)
.++..++++++|..++++++++.-+-+. ...+..+..+.++|
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g--------------------------------------~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPG--------------------------------------EDNVNLAKIYANLA 374 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhcc--------------------------------------ccchHHHHHHHHHH
Confidence 9999999999999999998876432110 00112356889999
Q ss_pred HHHhccccHHHHHHHHHHHhcch----------hhhhHhhHHHHHHHhccHHHHHHHHHHHHhc-------CCCcHHHHH
Q 012143 377 AVQKTHHEVAAAFETEENELSKM----------EECAGAGESAFLDQASAVNVAKECLLAALKA-------DPKAAHIWA 439 (470)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~ 439 (470)
.++..+|++.+|.+.+++++... ...+...+|..+.+.+++.+|...|..++.+ .|+....+.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL 454 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 99999999999999999976522 2345778999999999999999999888765 345567889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 012143 440 NLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 440 ~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
+||.+|..+|+++.|+++.++++.
T Consensus 455 nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=3.2e-16 Score=128.92 Aligned_cols=237 Identities=17% Similarity=0.146 Sum_probs=137.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccc
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~ 251 (470)
.|.-+.-.++.++|++.|...++.+|...++...||.++...|..+.|+..-+..+. .|+.+.....++..-
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~q------- 112 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQ------- 112 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHH-------
Confidence 344555556666677776666666666666666677777667777766666555443 344433322222211
Q ss_pred ccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
+|.-|...|-++.|...|........--..+...|..+|....+|++|++.-++..++.|.......
T Consensus 113 ---------L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---- 179 (389)
T COG2956 113 ---------LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---- 179 (389)
T ss_pred ---------HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH----
Confidence 2344445666666666666666544445566666666666666677776666666666665432111
Q ss_pred HHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHH
Q 012143 332 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESA 409 (470)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~ 409 (470)
+..+..++..+....+.+.|...+.+++. +....+-..+|.
T Consensus 180 -------------------------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~ 222 (389)
T COG2956 180 -------------------------------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR 222 (389)
T ss_pred -------------------------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence 22444555555555555666666655443 333445555666
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 410 FLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 410 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+....|+|+.|++.++.+++.+|+. +.+.-.|..||.++|+.++....+.++++..+
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 6666666666666666666666654 45555566666666666666666666655544
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.78 E-value=4.5e-17 Score=148.05 Aligned_cols=245 Identities=16% Similarity=0.163 Sum_probs=193.9
Q ss_pred CCCCcchhhhcccchhhhhcChhhHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 36 GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARK--------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 36 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
.|.-..+...++.. +..+|+++.|+..++.+++. +|.-......+|.+|..++++++|+..|++|+.+...
T Consensus 195 ~P~~~~~~~~La~~-y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEM-YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45555567779999 99999999999999999988 5666666677999999999999999999999997422
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC--------ccchHHHHHHHHHHHHc
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--------TRQAVVWNTLGLILLKS 179 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~ 179 (470)
. . -+.....+..+.+++.+| ...|++++|..++++++.+. |.-+..+..++.++..+
T Consensus 274 ~-~---G~~h~~va~~l~nLa~ly-----------~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~ 338 (508)
T KOG1840|consen 274 V-F---GEDHPAVAATLNNLAVLY-----------YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM 338 (508)
T ss_pred h-c---CCCCHHHHHHHHHHHHHH-----------hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh
Confidence 1 1 122233345566666665 46677799999999998753 33455778899999999
Q ss_pred CChHHHHHHHHHHhhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHH
Q 012143 180 GRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ--------NHPAALINYAAL 243 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~l~~~ 243 (470)
+++++|+.++++++++ +|.-+..+.++|.+|..+|++++|.+.|++++.+.. .....+..++..
T Consensus 339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~ 418 (508)
T KOG1840|consen 339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEA 418 (508)
T ss_pred cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHH
Confidence 9999999999999886 223466899999999999999999999999997642 222334445544
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
+ .+.+++.+|...|.+++.+ .|+....+.+|+.+|..+|+++.|+++..+++
T Consensus 419 ~---------------------~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 419 Y---------------------EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred H---------------------HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4 4788999999999888765 45567789999999999999999999999988
Q ss_pred h
Q 012143 317 K 317 (470)
Q Consensus 317 ~ 317 (470)
.
T Consensus 478 ~ 478 (508)
T KOG1840|consen 478 N 478 (508)
T ss_pred H
Confidence 4
No 81
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=8.6e-14 Score=120.62 Aligned_cols=421 Identities=13% Similarity=0.051 Sum_probs=283.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHH
Q 012143 18 LGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSS 97 (470)
Q Consensus 18 ~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 97 (470)
++.+..|- +.++++|..+..+...|...+.. -++...+..|...+.+++..-|.--..|+....+--..|+...|.+.
T Consensus 86 q~e~~RAR-Sv~ERALdvd~r~itLWlkYae~-Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRAR-SVFERALDVDYRNITLWLKYAEF-EMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHH-HHHHHHHhcccccchHHHHHHHH-HHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45566666 88999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccchhhh-------HHHHHHhhhccccccccCCC--ccccccCcccHHHHHHHHHHhhhcCccc---
Q 012143 98 YEKAEEILLRCEADIARPEL-------LSLVQIHHAQCLLPESSGDN--SLDKELEPEELEEILSKLKESMQSDTRQ--- 165 (470)
Q Consensus 98 ~~~al~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~~~~~~p~~--- 165 (470)
|++-++..|+.......-.+ -..-.++.....+.-..... .+.-..+.|+..-|...|.+++..-.++
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 99999987765321110000 00000000000000000000 0001234566666777777666543332
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------------------------------------------CCCChH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------------------------------------DPNNCD 201 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------------------------------------~~~~~~ 201 (470)
...+...|..-..++.++.|...|+-++.. +|.+.+
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 122333344444445555555555544433 344555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH--HHHHHHHHHhhhcccccccccchhhhhH-HHhcCCHHHHHHHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA--LINYAALLLCKYGSVLAGAGANTGEGAC-LDQASAVNVAKECL 278 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~ 278 (470)
+|+..-.+-...|+.+.-.+.|++++..-|....- |.....+.. +.+.. -....+.+.+.++|
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi--------------nYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI--------------NYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH--------------HHHHHHHHHhhhHHHHHHHH
Confidence 66666666677777777777777777666543322 111111111 01100 12578899999999
Q ss_pred HHHHhcCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHH
Q 012143 279 LAALKADPK----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEM 354 (470)
Q Consensus 279 ~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (470)
+.++++-|. .+.+|...|....++.+...|.+.+-.++-..|.+....-.+.+ .- -..-++.+
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel---El----------qL~efDRc 456 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL---EL----------QLREFDRC 456 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH---HH----------HHhhHHHH
Confidence 999999887 57789999999999999999999999999999997543322211 10 01122333
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch----hhhhHhhHHHHHHHhccHHHHHHHHHHHHhc
Q 012143 355 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM----EECAGAGESAFLDQASAVNVAKECLLAALKA 430 (470)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 430 (470)
......-....|.+-.+|...|.+-...|+.+.|...|..+++.. +...|-.....-...|.++.|...|++.|+.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 444444445567778899999999999999999999999988733 4444555555666889999999999999999
Q ss_pred CCCcHHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHHHhhccC
Q 012143 431 DPKAAHIWANLANAYY-----LTG-----------DHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 431 ~p~~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~~~~~ 468 (470)
.+... +|...|..-. ..| +...|...|++|...+..+
T Consensus 537 t~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 537 TQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred cccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 87554 8888887655 445 6678999999998877554
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.75 E-value=3.3e-15 Score=136.39 Aligned_cols=209 Identities=10% Similarity=0.001 Sum_probs=167.5
Q ss_pred CCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhccc
Q 012143 36 GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN---AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADI 112 (470)
Q Consensus 36 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 112 (470)
+|+.+.++..+|.. +...|+.+.+...+.++.+..|.+ .+..+..|.++...|++++|...++++++..|.+..
T Consensus 2 dp~~~~a~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-- 78 (355)
T cd05804 2 DPDFALGHAAAALL-LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL-- 78 (355)
T ss_pred CCccHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--
Confidence 79999999999988 888999999999999988888765 456788899999999999999999999998876531
Q ss_pred chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 113 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
.. .. +..+...|. ..+....+...+......+|....++..+|.++..+|++++|+..++++
T Consensus 79 ----a~------~~-~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 79 ----AL------KL-HLGAFGLGD-------FSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred ----HH------HH-hHHHHHhcc-------cccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 10 111111111 1234456666666656677887888889999999999999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH----HHHHHHHHHhhhcccccccccchhhhhHHHhc
Q 012143 193 LAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA----LINYAALLLCKYGSVLAGAGANTGEGACLDQA 268 (470)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (470)
++..|+++.++..+|.++...|++++|+..+++++...|.++.. +..++.++ ...
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~---------------------~~~ 199 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY---------------------LER 199 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH---------------------HHC
Confidence 99999999999999999999999999999999999988754332 33444444 489
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 012143 269 SAVNVAKECLLAALKADP 286 (470)
Q Consensus 269 ~~~~~A~~~~~~~~~~~p 286 (470)
|++++|+..|++++...|
T Consensus 200 G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999999987766
No 83
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.74 E-value=9.5e-17 Score=124.02 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=109.8
Q ss_pred HHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 152 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45788888888875 557888899999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
+++.+++.+|.++. ..|++++|+..|++++...|+++..+.+++.+....
T Consensus 90 ~~~~a~~~lg~~l~---------------------~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLK---------------------MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999988888887 688999999999999999999988888888776543
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.74 E-value=5.7e-16 Score=132.31 Aligned_cols=193 Identities=16% Similarity=0.105 Sum_probs=139.4
Q ss_pred CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHH
Q 012143 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 71 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
++..+..++.+|..+...|++++|+..|++++...|.+
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------------------------------------------ 66 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------------------------------------------ 66 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------------------------------------
Confidence 45567788888888888888888888888877764431
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH---HHHHHHHHHHHc--------CCHHHH
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD---CIGNLGIAYFQS--------GDMEQS 219 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~--------g~~~~A 219 (470)
|....+++.+|.++...|++++|+..|+++++..|+++. +++.+|.++... |++++|
T Consensus 67 ------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A 134 (235)
T TIGR03302 67 ------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREA 134 (235)
T ss_pred ------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 122346677777777777777777777777777776655 577777777765 677888
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 012143 220 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANLA 296 (470)
Q Consensus 220 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la 296 (470)
++.|++++..+|++...+..+..+..... ........+|.++...|++.+|+..+++++...|+ .+.++..+|
T Consensus 135 ~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 135 FEAFQELIRRYPNSEYAPDAKKRMDYLRN----RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 88888888888877655433322211000 00111234677788999999999999999999776 458999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 297 NAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.++...|++++|..+++......|+
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999888776653
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.73 E-value=1.3e-15 Score=130.00 Aligned_cols=196 Identities=16% Similarity=0.102 Sum_probs=129.8
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---H
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---A 236 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~ 236 (470)
+..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44456666666666666666666666666666666554 35566666666666666666666666666665554 3
Q ss_pred HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 237 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
++.+|.++. .. ++.++...|++++|+..|++++
T Consensus 110 ~~~~g~~~~---------------------~~--------------------------~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 110 YYLRGLSNY---------------------NQ--------------------------IDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred HHHHHHHHH---------------------Hh--------------------------cccccCCHHHHHHHHHHHHHHH
Confidence 344443332 11 1112333478899999999999
Q ss_pred hcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 012143 317 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 396 (470)
Q Consensus 317 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (470)
..+|++......+.. ++....
T Consensus 143 ~~~p~~~~~~~a~~~-------------------------------------------~~~~~~---------------- 163 (235)
T TIGR03302 143 RRYPNSEYAPDAKKR-------------------------------------------MDYLRN---------------- 163 (235)
T ss_pred HHCCCChhHHHHHHH-------------------------------------------HHHHHH----------------
Confidence 999987654322211 000000
Q ss_pred cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 397 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
........+|.++...|++.+|+..|++++...|+. +.+++.+|.++..+|++++|..+++.....+|
T Consensus 164 --~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 164 --RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 001122456678899999999999999999997764 68999999999999999999999988877664
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=5e-14 Score=125.33 Aligned_cols=195 Identities=13% Similarity=0.125 Sum_probs=142.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCC---ChhHHHHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPK---NAHAHFLLGLMYQR 87 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~ 87 (470)
.-..+...|+++++. ....+.+...|++..+.+..-.+ +.+.++|++|....++ ++. +....+..+.|.++
T Consensus 18 ~ln~~~~~~e~e~a~-k~~~Kil~~~pdd~~a~~cKvVa-lIq~~ky~~ALk~ikk----~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAV-KTANKILSIVPDDEDAIRCKVVA-LIQLDKYEDALKLIKK----NGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHH-HHHHHHHhcCCCcHhhHhhhHhh-hhhhhHHHHHHHHHHh----cchhhhcchhhHHHHHHHHH
Confidence 344566789999999 99999999999999999888888 8899999988855543 442 11222688999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC-----
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD----- 162 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----- 162 (470)
.++.++|+..++- ++. .+ +... ...+.+ .++.|+|++|+.+|+..++.+
T Consensus 92 lnk~Dealk~~~~-~~~--~~------~~ll------~L~AQv-----------lYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 92 LNKLDEALKTLKG-LDR--LD------DKLL------ELRAQV-----------LYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred cccHHHHHHHHhc-ccc--cc------hHHH------HHHHHH-----------HHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 9999999998882 111 11 0010 011111 346677788888887764432
Q ss_pred -------------------------cc-chHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--------CC-------ChH
Q 012143 163 -------------------------TR-QAVVWNTLGLILLKSGRLQSSISVLSSLLAVD--------PN-------NCD 201 (470)
Q Consensus 163 -------------------------p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~-------~~~ 201 (470)
|. ..+.+++.+.++...|+|.+|++.+++++.+. .+ -..
T Consensus 146 ~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 146 EERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 22 35578899999999999999999999995431 11 124
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+...++.++..+|+..+|...|...+..+|.+....
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~ 261 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSL 261 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHH
Confidence 678999999999999999999999999998876543
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.72 E-value=1.3e-13 Score=127.25 Aligned_cols=423 Identities=13% Similarity=0.028 Sum_probs=263.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC--
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG-- 89 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-- 89 (470)
...+.+.|++++|+ ..+.+.-..-+|.....-..|.+ +...|++++|...+...++.+|++...+..+..+.....
T Consensus 11 ~~il~e~g~~~~AL-~~L~~~~~~I~Dk~~~~E~rA~l-l~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEAL-EHLEKNEKQILDKLAVLEKRAEL-LLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHH-HHHHhhhhhCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 45677899999999 99998888888888888899999 999999999999999999999999999999988884443
Q ss_pred ---ChhHHHHHHHHHHHHHhhhhcccc-------hhhhHHHHHHhhhcc------ccccccCCCccccccCcccHHHHHH
Q 012143 90 ---QPLKAVSSYEKAEEILLRCEADIA-------RPELLSLVQIHHAQC------LLPESSGDNSLDKELEPEELEEILS 153 (470)
Q Consensus 90 ---~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~ 153 (470)
+.+.-..+|++.....|....... ...+...+..+.... .++..+.. .|.......-...
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~----Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKP----LYKDPEKAAIIES 164 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHH----HHcChhHHHHHHH
Confidence 456678888877777665432211 011111111111100 00000000 0111122222222
Q ss_pred HHHHhh---hc------------Cccc--hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCH
Q 012143 154 KLKESM---QS------------DTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 154 ~~~~~~---~~------------~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 216 (470)
++.... +. .|.. ..+++.++..|-..|++++|+.+++++|+..|..++.+...|.++-..|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 222221 11 1111 246688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--C-------
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--K------- 287 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~------- 287 (470)
.+|.+.++.+..+++.+...-...+..++ +.|+.++|.+.+..-...+. .
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L---------------------Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLL---------------------RAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHH---------------------HCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 99999999999999988776666665555 79999999998887765542 1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc----cHHH-H------HHHHHHHHhhhccCchHHhhhhHHHHHH
Q 012143 288 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM----STRY-A------VAVSRIKDAERSQEPTEQLSWAGNEMAS 356 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~-~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
........|.+|.+.|++..|+..|..+.+...+.. +.+. . .+...+.+..........+..+...+..
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~ 383 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIR 383 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 123345669999999999999999998887543221 1111 0 0111111222222222223322222222
Q ss_pred H----hhcCCCCCC----------CcHHHHHHHHHHH--hccccHHHHHHHHHHHh----------c--chhhhhHhhHH
Q 012143 357 I----LREGDPVQI----------EPPIAWAGFAAVQ--KTHHEVAAAFETEENEL----------S--KMEECAGAGES 408 (470)
Q Consensus 357 ~----~~~~~~~~~----------~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~----------~--~~~~~~~~~l~ 408 (470)
. ......... .....--..-..- ....+-+++...-.+.. . .....----.|
T Consensus 384 iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G 463 (517)
T PF12569_consen 384 IYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG 463 (517)
T ss_pred HHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH
Confidence 2 111110000 0000000000000 00011111111000000 0 00000011234
Q ss_pred HHHHHhcc-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 409 AFLDQASA-VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 409 ~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
.-+....+ .++|.++++..++..|++.+.|..--.+|.+.|++--|+..+.+|
T Consensus 464 ekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 464 EKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 44555543 789999999999999999999999999999999999999988765
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=5.1e-16 Score=119.95 Aligned_cols=122 Identities=20% Similarity=0.151 Sum_probs=114.7
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHH
Q 012143 186 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 265 (470)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (470)
...|+++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-------------------- 69 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-------------------- 69 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--------------------
Confidence 56799999999885 6678999999999999999999999999999999999999888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 266 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 266 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
..|++++|+..|++++..+|+++.+++++|.++...|++++|+..|++++...|+++..+...+.
T Consensus 70 -~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 70 -MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred -HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999988876655
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.3e-13 Score=113.73 Aligned_cols=277 Identities=15% Similarity=0.055 Sum_probs=169.7
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCc-chhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhH
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDAD-GDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLK 93 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 93 (470)
+....++..|+ +.++-.+..+.... .....+|.+ +...|++++|...|+-+...+..+.+.+..|+.+++-.|.|.+
T Consensus 32 fls~rDytGAi-slLefk~~~~~EEE~~~~lWia~C-~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAI-SLLEFKLNLDREEEDSLQLWIAHC-YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHH-HHHHHhhccchhhhHHHHHHHHHH-HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 33456778888 77777776554433 445567888 9999999999999999888777778899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 173 (470)
|...-.++-+. |-. .+....++. +.++ ++-+-.|...++.. .+-...++
T Consensus 110 A~~~~~ka~k~----------pL~---~RLlfhlah--------------klnd-Ek~~~~fh~~LqD~---~EdqLSLA 158 (557)
T KOG3785|consen 110 AKSIAEKAPKT----------PLC---IRLLFHLAH--------------KLND-EKRILTFHSSLQDT---LEDQLSLA 158 (557)
T ss_pred HHHHHhhCCCC----------hHH---HHHHHHHHH--------------HhCc-HHHHHHHHHHHhhh---HHHHHhHH
Confidence 98887775431 111 111122211 2222 33344444444322 23445667
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 253 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (470)
.++...-.|++|++.|++++.-+|+....-..++.||.++.-++-+.+.+.-.++..|+.+.+....+..++.......+
T Consensus 159 svhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 159 SVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchh
Confidence 77777777888888888888777777777777888888888888888888877887887777766655555432111000
Q ss_pred c---------cccchhhhhHHHhc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 254 G---------AGANTGEGACLDQA-----SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 254 ~---------~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
. ....+..+....+. .+-+.|++++-..++. -|++..++...|.++++.++|+...+ .++
T Consensus 239 e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL~q~dVqeA~~L~K---dl~ 312 (557)
T KOG3785|consen 239 EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYLNQNDVQEAISLCK---DLD 312 (557)
T ss_pred HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeecccccHHHHHHHHh---hcC
Confidence 0 00000001000000 0112233322222222 35677778878888888888876664 456
Q ss_pred CCcccHHHHHH
Q 012143 320 PNCMSTRYAVA 330 (470)
Q Consensus 320 p~~~~~~~~l~ 330 (470)
|..+..+...+
T Consensus 313 PttP~EyilKg 323 (557)
T KOG3785|consen 313 PTTPYEYILKG 323 (557)
T ss_pred CCChHHHHHHH
Confidence 77666555443
No 90
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.69 E-value=2e-15 Score=123.02 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=129.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
|+..|+++......++.. +|.. -+...++.++++..++++++.+|+++..|..+|.+|...|++++|+.
T Consensus 26 Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 26 YLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 556677777554443222 1211 11136788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA--VNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
.|+++++++|+++..+..++.++.. ..|+ +++|...++++++.+|+++.++..+|..+
T Consensus 95 a~~~Al~l~P~~~~~~~~lA~aL~~--------------------~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 95 AYRQALQLRGENAELYAALATVLYY--------------------QAGQHMTPQTREMIDKALALDANEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH--------------------hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 9999999999999999999987542 4666 59999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCcccH
Q 012143 300 YLTGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
...|++++|+.+++++++..|.+..-
T Consensus 155 ~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 155 FMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 99999999999999999999886643
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.69 E-value=5.8e-15 Score=120.39 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=117.8
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH-HHcCC--HHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY-FQSGD--MEQSA 220 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~--~~~A~ 220 (470)
..++.++++..+++++..+|+++..|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3466799999999999999999999999999999999999999999999999999999999999975 67787 59999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 221 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
..++++++.+|+++.++..+|..+. +.|++++|+.+++++++..|.+..-
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~---------------------~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAF---------------------MQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999998887 7999999999999999998875543
No 92
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.69 E-value=1.5e-14 Score=139.45 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=105.8
Q ss_pred HhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhccc
Q 012143 33 LEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADI 112 (470)
Q Consensus 33 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 112 (470)
...+|++..+|..+... +...+++++|...++..++.+|+...+++.+|.++.+.+++.++... .++...+.
T Consensus 24 ~~~~p~n~~a~~~Li~~-~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~----- 95 (906)
T PRK14720 24 NNYSLSKFKELDDLIDA-YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ----- 95 (906)
T ss_pred ccCCcchHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-----
Confidence 35577888888888888 88888999999999988888999999999999988888887777666 55544221
Q ss_pred chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 113 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
..++ .++..+...+...+++..+++.+|.||-++|++++|...|+++
T Consensus 96 --------------------------------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 96 --------------------------------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred --------------------------------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1222 4444444444445566666666666666666666666666666
Q ss_pred hhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 193 LAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
++.+|+++.++.++|..|... +.++|++++.+++.
T Consensus 143 L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 143 VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 666666666666666666666 66666666666554
No 93
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2.2e-14 Score=119.71 Aligned_cols=316 Identities=12% Similarity=0.042 Sum_probs=207.4
Q ss_pred ccCcccHHHHHHHHHHhhhcCccch-HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 220 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (470)
.+...+|..|+..++-....+.... .....+|.|++..|+|++|+..|.-+...+..+...+.+++.+++-+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4567889999999998876655443 566779999999999999999999998877777889999999999999999998
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhh------hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 221 KCFQDLILKDQNHPAALINYAALLLCK------YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
..-.++-+ .|-....++.++.-+-.. ........+..++++.+....-.|.+|+++|.+++..+|+....-..
T Consensus 112 ~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 112 SIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 88776532 111111222222111100 00011123556677888888889999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhh-------hHHHHH------------
Q 012143 295 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSW-------AGNEMA------------ 355 (470)
Q Consensus 295 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~------------ 355 (470)
++.||+++.-++-+.+.++-.++..|+++.+....+...+.-. ....+...... .+....
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~-ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI-NGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh-ccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 9999999999999999999999999998877665544322211 00000000000 000010
Q ss_pred --HHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHH--------------------
Q 012143 356 --SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQ-------------------- 413 (470)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 413 (470)
..+.-..+.....|++..++...|..+++..+|+...+. ++|..+.-+.-.|.++..
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 111111111123466777888888888888888876543 333333333333333333
Q ss_pred -----------------------hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012143 414 -----------------------ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 460 (470)
Q Consensus 414 -----------------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 460 (470)
..++++.+.++...-...-++....+++|..+...|++.+|.+.|-+
T Consensus 349 VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 349 VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 33355555555555455555666677777777777887777777644
No 94
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.64 E-value=2.6e-15 Score=127.65 Aligned_cols=281 Identities=15% Similarity=0.117 Sum_probs=210.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcc----hhhhcccchhhhhcChhhHHHHHHHHH------HhCCCChhHHH
Q 012143 10 VEGKKINKLGKCRSRISSKMDSALEFGVDADG----DQSGLGTSSSSREEKVSSLKTGLVHVA------RKMPKNAHAHF 79 (470)
Q Consensus 10 ~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l------~~~p~~~~~~~ 79 (470)
-||..+.+.|+++.-+ +.|+.+++...++.. .|..+|.. +...++|++|.++-..-+ .-.-..+.+--
T Consensus 22 lEGERLck~gdcraGv-~ff~aA~qvGTeDl~tLSAIYsQLGNA-yfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGV-DFFKAALQVGTEDLSTLSAIYSQLGNA-YFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHhccchhhhH-HHHHHHHHhcchHHHHHHHHHHHhcch-hhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 3899999999999999 999999999888755 57789999 999999999998654322 22223345667
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccc---------cCcccHHH
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE---------LEPEELEE 150 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 150 (470)
+||..+.-.|.|++|+.+..+-+.+... ..+-....+++++++.+|...|+...-.. -....++.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~are------LgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARE------LGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHH------HhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 8999999999999999999998877532 35556667888999999887777511100 01123455
Q ss_pred HHHHHHHhhhcCcc------chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHcCCHHH
Q 012143 151 ILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 151 A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~ 218 (470)
|.++|..-++.... ...++-++|..|+-+|+|+.|+..-+.-+.+.... ..++.++|.++.-+|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 55666555443322 13467788999999999999999988877764433 3589999999999999999
Q ss_pred HHHHHHHHHhhC----CCCh--HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-----
Q 012143 219 SAKCFQDLILKD----QNHP--AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----- 287 (470)
Q Consensus 219 A~~~~~~~l~~~----p~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----- 287 (470)
|+++|++.+.+. .... ...+.+| ..|.-..++++||.++.+-+.+...
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLg---------------------Ntytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLG---------------------NTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhh---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999987542 2222 2234444 4444788899999999998876432
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 288 -AAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 288 -~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
...+++.||..+...|..++|+.+.+..++..
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 56789999999999999999999988887653
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.5e-12 Score=113.87 Aligned_cols=362 Identities=14% Similarity=0.086 Sum_probs=206.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
+...|+|++|.+...+++...|++.++.+..-.+..+.++|++|+...+.-...... ...+ +..+.+
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~------~~~~-------fEKAYc 88 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI------NSFF-------FEKAYC 88 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc------chhh-------HHHHHH
Confidence 567899999999999999999999999999999999999999998554442221100 0000 112222
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
.++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+..++.+.++.+........-
T Consensus 89 -----------~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 89 -----------EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred -----------HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 234455577777777 334445556677777777777777777777777766655554433332221
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC---
Q 012143 211 FQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--- 286 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--- 286 (470)
.... ..+ . ..+.....|. ..+.+++.+.++. ..|+|.+|++.+++++.+..
T Consensus 155 ~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i---------------------~~gky~qA~elL~kA~~~~~e~l 209 (652)
T KOG2376|consen 155 VAAA--LQV-Q-LLQSVPEVPEDSYELLYNTACILI---------------------ENGKYNQAIELLEKALRICREKL 209 (652)
T ss_pred HHHh--hhH-H-HHHhccCCCcchHHHHHHHHHHHH---------------------hcccHHHHHHHHHHHHHHHHHhh
Confidence 1110 000 0 2222233332 3344555555555 79999999999999954311
Q ss_pred -----C-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhh---hccC---------
Q 012143 287 -----K-------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE---RSQE--------- 342 (470)
Q Consensus 287 -----~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~~--------- 342 (470)
. -..+...++.++..+|+..+|...|...++.+|.+......... .+.... ...+
T Consensus 210 ~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~N-NLva~~~d~~~~d~~~l~~k~~ 288 (652)
T KOG2376|consen 210 EDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVN-NLVALSKDQNYFDGDLLKSKKS 288 (652)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhc-chhhhccccccCchHHHHHHHH
Confidence 1 13467889999999999999999999999998877543221110 000000 0000
Q ss_pred ----------------------c----hHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 012143 343 ----------------------P----TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 396 (470)
Q Consensus 343 ----------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (470)
. ...+......+.+.........|..................+.+++..+....
T Consensus 289 ~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~ 368 (652)
T KOG2376|consen 289 QVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFA 368 (652)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 0 00000001111222222222222221112222222233335667777776655
Q ss_pred cchhhh---hHhhHHHHHHHhccHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 397 SKMEEC---AGAGESAFLDQASAVNVAKECLLAAL--------KADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 397 ~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+..+.. +.+.++......|+++.|+..+...+ +.. ..|.+-..+-..+.+.++.+.|...+.+|+.-+
T Consensus 369 ~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 369 DGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 544443 56667777777888888888777332 221 224444444555666777777777777777655
Q ss_pred c
Q 012143 466 C 466 (470)
Q Consensus 466 ~ 466 (470)
.
T Consensus 448 ~ 448 (652)
T KOG2376|consen 448 R 448 (652)
T ss_pred H
Confidence 3
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.64 E-value=6.2e-14 Score=134.39 Aligned_cols=156 Identities=9% Similarity=0.056 Sum_probs=144.5
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.+++.-+....+..|.++++++.||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 44555555666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 308 (470)
.+|++..+++.+|.++. +.|++++|+.+|++++..+|+++.++..+|.++...|+.++|
T Consensus 149 ~~p~~~~~~~~~a~~l~---------------------~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 149 GGSSSAREILLEAKSWD---------------------EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred cCCCCHHHHHHHHHHHH---------------------HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999888 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccH
Q 012143 309 GKCLEKAAKLEPNCMST 325 (470)
Q Consensus 309 ~~~~~~a~~~~p~~~~~ 325 (470)
...|++++....+-...
T Consensus 208 ~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 208 RDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHhhCcchHH
Confidence 99999999887654433
No 97
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2.2e-13 Score=108.72 Aligned_cols=169 Identities=19% Similarity=0.205 Sum_probs=156.9
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
+..|+.+-|..++++.....|.+..+-...|..+...|++++|+++|+..++-+|.+..++...-.+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 35577799999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
+...++..+.+.++|..++.+|. ..|+|++|.-|+++.+-+.|.++..+..+|.+++-+
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~---------------------~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYL---------------------SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH---------------------hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999998 699999999999999999999999999999999988
Q ss_pred C---ChhHHHHHHHHHHhcCCCcccHHHHHHHH
Q 012143 303 G---DHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 303 g---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
| ++.-|.++|.++++++|.+..+++++.++
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 7 46779999999999999888888876553
No 98
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1e-11 Score=105.98 Aligned_cols=259 Identities=17% Similarity=0.103 Sum_probs=176.5
Q ss_pred CcccHHHHHHHHHHhhhcCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTR-QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
..|+++.+-.++.++-+..++ .......++.+...+|+++.|.....++++..|.++.+......+|...|++......
T Consensus 130 qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHH
Confidence 445556666666666665332 2456777889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhCCCChHHHHHHHH-HHHhhhcccccccccchhhhhHHHhcCCHHHHH---HHHHHHHhcCCCCHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAALINYAA-LLLCKYGSVLAGAGANTGEGACLDQASAVNVAK---ECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~---~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
+.+.-+..--+.+-...+-. .+.. ++.+.++-..+. .+.+..-..-..++.+...++.-
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~g-----------------lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEG-----------------LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHH-----------------HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 88877654332222111111 1110 001122222222 23333222233468888889999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH
Q 012143 299 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 378 (470)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (470)
+...|++++|.+..+.+++..-+.. .. .+- .
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~--L~-----~~~-----------------------~------------------- 303 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPR--LC-----RLI-----------------------P------------------- 303 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChh--HH-----HHH-----------------------h-------------------
Confidence 9999999999999999998765532 11 000 0
Q ss_pred HhccccHHHHHHHHHHHh--cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 012143 379 QKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 456 (470)
Q Consensus 379 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 456 (470)
....++...-++..++.+ .+.++..+..+|..+.+.+.|.+|..+|+.++...|+ ...+..+|.++.++|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 011122222233333322 2444567888999999999999999999999999875 5678999999999999999999
Q ss_pred HHHHHHHhhccCC
Q 012143 457 CLEKVLMVYCSSN 469 (470)
Q Consensus 457 ~~~~al~~~~~~~ 469 (470)
.+++++-++.+++
T Consensus 383 ~r~e~L~~~~~~~ 395 (400)
T COG3071 383 VRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHhcCCC
Confidence 9999997775554
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.61 E-value=2.9e-13 Score=109.16 Aligned_cols=145 Identities=21% Similarity=0.283 Sum_probs=122.0
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
+.+..+..++...+|.+...+..+|...++.|++..|+..++++....|++..+|..+|.+|.+.|++++|...|.++++
T Consensus 83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred cchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 33334444444446677777777889999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 308 (470)
+.|+++....+++..+. -.|+++.|..++..+....+.+..+..+++.+...+|++++|
T Consensus 163 L~~~~p~~~nNlgms~~---------------------L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 163 LAPNEPSIANNLGMSLL---------------------LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred hccCCchhhhhHHHHHH---------------------HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999888887 689999999999999888888899999999999999999988
Q ss_pred HHHHHH
Q 012143 309 GKCLEK 314 (470)
Q Consensus 309 ~~~~~~ 314 (470)
.....+
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 776544
No 100
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=1.8e-11 Score=110.43 Aligned_cols=417 Identities=15% Similarity=0.114 Sum_probs=270.0
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCcchhhhcccch-------hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 17 KLGKCRSRISSKMDSALEFGVDADGDQSGLGTSS-------SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 17 ~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
+.|...+.+.-.|++++..-|.+...|+..-..- ..-...|.....+|++++-.-.+.|..|.........+|
T Consensus 37 k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~ 116 (835)
T KOG2047|consen 37 KAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQG 116 (835)
T ss_pred HccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Confidence 4566666665789999999999999988533110 122345777788899998888888999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHH
Q 012143 90 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVW 169 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 169 (470)
+...-...|.+|+...|-.......+-++.... ..+-.+-++..|++.++..|...+
T Consensus 117 ~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~---------------------~~~lPets~rvyrRYLk~~P~~~e-- 173 (835)
T KOG2047|consen 117 LITRTRRTFDRALRALPVTQHDRIWDLYLKFVE---------------------SHGLPETSIRVYRRYLKVAPEARE-- 173 (835)
T ss_pred hHHHHHHHHHHHHHhCchHhhccchHHHHHHHH---------------------hCCChHHHHHHHHHHHhcCHHHHH--
Confidence 999999999999998776544333333332221 223346788888888888876543
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc------------------------CCCC---------------------hHHHH
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAV------------------------DPNN---------------------CDCIG 204 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~------------------------~~~~---------------------~~~~~ 204 (470)
.....+...+++++|.+.+...+.. +|+. ...|.
T Consensus 174 -eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 174 -EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred -HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 3345566777788877777776542 1211 23588
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHH-----hhh------ccccc-----------------
Q 012143 205 NLGIAYFQSGDMEQSAKCFQDLILKDQ---NHPAALINYAALLL-----CKY------GSVLA----------------- 253 (470)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~-----~~~------~~~~~----------------- 253 (470)
.||..|.+.|.+++|...|++++..-- +....+...+..-. ... .....
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 899999999999999999999885421 11111111111000 000 00000
Q ss_pred ---------------ccccchhhhhHHHhcCCHHHHHHHHHHHHhc-CCC-----CHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 254 ---------------GAGANTGEGACLDQASAVNVAKECLLAALKA-DPK-----AAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 254 ---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~-----~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
..+.| .-.+-...|+..+-+..|.+++.. +|. ....|..+|..|...|+.+.|...|
T Consensus 333 r~~~lNsVlLRQn~~nV~eW--~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEW--HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred cchHHHHHHHhcCCccHHHH--HhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 00111 123334567888889999988864 554 3568999999999999999999999
Q ss_pred HHHHhcCCCcc----cHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhh--------cCCCCCC------CcHHHHHH
Q 012143 313 EKAAKLEPNCM----STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR--------EGDPVQI------EPPIAWAG 374 (470)
Q Consensus 313 ~~a~~~~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~~~~~~~~ 374 (470)
+++.+..=... ..|...+-..+. ...+..+..-+..... ......| ....+|..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElr--------h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELR--------HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 99998653322 223322221111 1111111111111110 0111111 24567888
Q ss_pred HHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH---HH
Q 012143 375 FAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKAD--PKAAHIWANLANAY---YL 447 (470)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~---~~ 447 (470)
.+......|-++.....|.+.++ -..+..-.+.|..+....-++++.+.|++-+.+. |.-.++|...-... +.
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 88888888989888888888655 4445566677778888888999999999999875 45566665443332 33
Q ss_pred cCChHHHHHHHHHHHHhhcc
Q 012143 448 TGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 448 ~g~~~~A~~~~~~al~~~~~ 467 (470)
.-..+.|...|++|++..|+
T Consensus 563 g~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCPP 582 (835)
T ss_pred CCCHHHHHHHHHHHHhcCCH
Confidence 45789999999999997664
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.6e-12 Score=103.84 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=137.8
Q ss_pred ccHHHHHHHHHHhhh------cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHH
Q 012143 146 EELEEILSKLKESMQ------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 219 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (470)
.+.++-++.....+. ..|+...++-....+....|+.+-|..++++.....|.+..+....|..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 344666666655544 33444556666777888899999999999999988999999999999999999999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 220 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 220 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
+++|+..++-+|.+...+.....+.. ..|+.-+|++.+..-++..+.+.++|..++.+|
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilk---------------------a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILK---------------------AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY 164 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHH---------------------HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999888776655555 588889999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 300 YLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
...|+|++|.-++++++-+.|.++..+.
T Consensus 165 ~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred HhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 9999999999999999999999764333
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.59 E-value=4.7e-13 Score=107.98 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=144.4
Q ss_pred cHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3455666677777889999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 012143 227 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 227 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 306 (470)
....|+++.+|..+|.+|. +.|+++.|...|.+++++.|..+.+..++|..+.-.|+++
T Consensus 127 ~~l~p~d~~~~~~lgaald---------------------q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALD---------------------QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred hccCCCChhhhhHHHHHHH---------------------HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 9999999999999998887 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcccHH
Q 012143 307 SSGKCLEKAAKLEPNCMSTR 326 (470)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~ 326 (470)
.|..++.++....+.+....
T Consensus 186 ~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 186 DAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred HHHHHHHHHHhCCCCchHHH
Confidence 99999999988777655433
No 103
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.59 E-value=4.7e-14 Score=120.14 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=81.5
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHH--
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE-- 157 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-- 157 (470)
.-|.-+++.|+....+.+|+.|++... .++..+..++..++.+| +-.++|++|+++-.-
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGT--------eDl~tLSAIYsQLGNAy-----------fyL~DY~kAl~yH~hDl 82 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGT--------EDLSTLSAIYSQLGNAY-----------FYLKDYEKALKYHTHDL 82 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcc--------hHHHHHHHHHHHhcchh-----------hhHhhHHHHHhhhhhhH
Confidence 347778899999999999999998642 34444445555555554 455666888876543
Q ss_pred ----hhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC------CChHHHHHHHHHHHHcCC
Q 012143 158 ----SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGD 215 (470)
Q Consensus 158 ----~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~ 215 (470)
.+...-..+.+.-++|.++-..|.|++|+.+..+-+.+.. ....+++++|.+|...|+
T Consensus 83 tlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 83 TLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred HHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 2222233455667889999999999999998888766532 235688899999887765
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=4.1e-11 Score=98.22 Aligned_cols=378 Identities=14% Similarity=0.080 Sum_probs=228.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHH
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKA 94 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A 94 (470)
+.+-.++..+| ..+..-.+.+|.+..+...+|.+ +....++..|-.+|++.-...|......+..+..+++.+.+..|
T Consensus 20 lI~d~ry~DaI-~~l~s~~Er~p~~rAgLSlLgyC-YY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 20 LIRDARYADAI-QLLGSELERSPRSRAGLSLLGYC-YYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHhhHHHHH-HHHHHHHhcCccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 46777889999 89999999999999999999999 99999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHhhh-hc-----------ccchhhhHHHHHHhh--hccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 95 VSSYEKAEEILLRC-EA-----------DIARPELLSLVQIHH--AQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 95 ~~~~~~al~~~~~~-~~-----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
+.......+. |.- +. ....++...+..-.. +-+......|-. .++.|+++.|++-|+.+++
T Consensus 98 LrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl----lykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 98 LRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL----LYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe----eeccccHHHHHHHHHHHHh
Confidence 9887765542 100 00 000111111111111 122222333333 5677777888888888888
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCCC-------------------------hHHHHHHHHHHH
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNN-------------------------CDCIGNLGIAYF 211 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------------------------~~~~~~la~~~~ 211 (470)
....++..-++++.++++.|++..|+++..+.++. .|.. ..++...+.+++
T Consensus 173 vsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 173 VSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 77777777778888888888888888777666553 3321 124555566777
Q ss_pred HcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 012143 212 QSGDMEQSAKCFQDLILKD--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 289 (470)
+.|+++.|.+.+...--.. .-+|..+.+++..- ..+++.+...-+.-.+.++|--+
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n----------------------~~~~p~~g~~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN----------------------MDARPTEGFEKLQFLLQQNPFPP 310 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc----------------------ccCCccccHHHHHHHHhcCCCCh
Confidence 7777777766654432111 12344455555443 25666666666667777777666
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcH
Q 012143 290 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 369 (470)
Q Consensus 290 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
+..-++-.+|.+..-++-|...+ ..+|+...-...--...+.
T Consensus 311 ETFANlLllyCKNeyf~lAADvL----AEn~~lTyk~L~~Yly~LL---------------------------------- 352 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVL----AENAHLTYKFLTPYLYDLL---------------------------------- 352 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHH----hhCcchhHHHhhHHHHHHH----------------------------------
Confidence 77777777777766666665443 3334322111110000010
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhcchhhh-----hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012143 370 IAWAGFAAVQKTHHEVAAAFETEENELSKMEEC-----AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 444 (470)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 444 (470)
-.+-..+-..++|.+-+.......... +.......-.......+|++.|++++++ ...+....+++
T Consensus 353 ------daLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~Aki 423 (459)
T KOG4340|consen 353 ------DALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKI 423 (459)
T ss_pred ------HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 000111111222221111100000000 0000000000111245677777777775 34577889999
Q ss_pred HHHcCChHHHHHHHHHHHHhhccC
Q 012143 445 YYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 445 ~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|....++..+.+.|++..+.....
T Consensus 424 yW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 424 YWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred hccccccHHHHHHHHHHHhhhccc
Confidence 999999999999999999876543
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.58 E-value=9.7e-12 Score=128.01 Aligned_cols=347 Identities=13% Similarity=0.041 Sum_probs=220.7
Q ss_pred cccchhhhhcChhhHHHHHHHHHH-hCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHh
Q 012143 46 LGTSSSSREEKVSSLKTGLVHVAR-KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH 124 (470)
Q Consensus 46 ~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 124 (470)
.+.. ....|++..+...+..+-. ....++.....++.++...|++++|...+..+....+..... ..+... ..+.
T Consensus 380 ~a~~-l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~-~~~~~~--~~~~ 455 (903)
T PRK04841 380 HGWS-LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIE-LDGTLQ--AEFN 455 (903)
T ss_pred hHHH-HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcc-cchhHH--HHHH
Confidence 4444 5566777776666654311 122345566788999999999999999999987653321100 001111 1111
Q ss_pred hhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 125 HAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
...+.+ +...|++++|...+++++...|.. ..+...+|.++...|++++|...+++++......
T Consensus 456 ~~~a~~-----------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 456 ALRAQV-----------AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHH-----------HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 122222 345678899999999998754432 2356678999999999999999999998763321
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----h---HHHHHHHHHHHhhhcccccccccchhhhhHH
Q 012143 200 ------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-----P---AALINYAALLLCKYGSVLAGAGANTGEGACL 265 (470)
Q Consensus 200 ------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (470)
..++..+|.++...|++++|...+++++...... + ..+..+ |.++
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------------------a~~~ 583 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR---------------------AQLL 583 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH---------------------HHHH
Confidence 2466788999999999999999999998753221 1 112222 4444
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhc
Q 012143 266 DQASAVNVAKECLLAALKADPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 340 (470)
Q Consensus 266 ~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 340 (470)
...|++++|...+.+++..... ....+..+|.++...|++++|...+.++..+.+...........
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~--------- 654 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN--------- 654 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH---------
Confidence 5789999999999999875332 34566778999999999999999999997764432110000000
Q ss_pred cCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh------hhHhhHHHHHHHh
Q 012143 341 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQA 414 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~ 414 (470)
........+...|+.+.|.........+... ..+..++.++...
T Consensus 655 ------------------------------~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 655 ------------------------------ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred ------------------------------HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 0000011222244555555544442221111 1134566677777
Q ss_pred ccHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 415 SAVNVAKECLLAALKADP------KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 415 ~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|++++|+..+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 777778777777776421 22456677788888888888888888888877644
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.58 E-value=7.7e-14 Score=107.88 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=85.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
..|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++..+..+|.++.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--------------------- 62 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ--------------------- 62 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------
Confidence 35666777777777777777777777777777777777777777777777777666665
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
..|++++|+.++++++..+|+++..++.+|.++...|++++|+..|+++++.+|++..
T Consensus 63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 5677777777777777777777777777777777777777777777777777776654
No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.58 E-value=9.9e-14 Score=107.28 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=112.4
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 153 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
..+++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 012143 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292 (470)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 292 (470)
++..++.+|.++. ..|++++|+..|+++++.+|++....
T Consensus 84 ~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLL---------------------ALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999998887 79999999999999999999876644
No 108
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.57 E-value=5.6e-12 Score=116.65 Aligned_cols=245 Identities=12% Similarity=0.066 Sum_probs=162.8
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHH
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 120 (470)
+.......+ +...|++++|.+.+.+....-++....+-..|.++...|++++|...|+..++.+|++.. +
T Consensus 5 E~lLY~~~i-l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~------Y--- 74 (517)
T PF12569_consen 5 ELLLYKNSI-LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD------Y--- 74 (517)
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH------H---
Confidence 344556666 888999999999999988888999999999999999999999999999999999887521 1
Q ss_pred HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHH-HHHHHHHHhhcCCCC
Q 012143 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQS-SISVLSSLLAVDPNN 199 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~a~~~~~~~ 199 (470)
+..+..+...... ....+.+.-..+|++.....|....+. .+...+..-..+.. +..++...+. ..-
T Consensus 75 ---y~~L~~~~g~~~~------~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~--Kgv 142 (517)
T PF12569_consen 75 ---YRGLEEALGLQLQ------LSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLR--KGV 142 (517)
T ss_pred ---HHHHHHHHhhhcc------cccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHh--cCC
Confidence 1111111100000 122356777888888888887643322 22222222223333 3334444443 345
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C----C-----CChHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILK---D----Q-----NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~----p-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
|..+..+-.+|....+..-....+...... . + ..++........ .++..|..
T Consensus 143 PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~----------------~lAqhyd~ 206 (517)
T PF12569_consen 143 PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLY----------------FLAQHYDY 206 (517)
T ss_pred chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHH----------------HHHHHHHH
Confidence 666667766666444333333333332211 0 0 011111111111 13566668
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.|++++|+++++++|+..|..++.+...|.++-..|++.+|...++.+..+++.+-
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 99999999999999999999999999999999999999999999999999998753
No 109
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=3.5e-14 Score=116.60 Aligned_cols=104 Identities=20% Similarity=0.347 Sum_probs=99.2
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+++.++|.+|+..|.++|.++|.++..|.+++.+|.++|.++.|++.++.++.++|....+|..||.+|..+|++.+|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
.|+++++++|++...+..|..+-.
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999999987777766554
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.53 E-value=1.3e-12 Score=125.38 Aligned_cols=146 Identities=7% Similarity=-0.005 Sum_probs=111.9
Q ss_pred HHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCccc
Q 012143 68 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE 147 (470)
Q Consensus 68 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (470)
....|+++++++.||.+....|.+++|...++.++++.|+.. .++..++.++ .+.++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~------------~a~~~~a~~L-----------~~~~~ 135 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS------------EAFILMLRGV-----------KRQQG 135 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH------------HHHHHHHHHH-----------HHhcc
Confidence 345788899999999999999999999999999998876642 2223333332 35566
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+++|+..+++++..+|+++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|++++
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68888888888888888888888888888888888888888888888778888888888888888888888888888888
Q ss_pred hhCCCChHH
Q 012143 228 LKDQNHPAA 236 (470)
Q Consensus 228 ~~~p~~~~~ 236 (470)
....+-...
T Consensus 216 ~~~~~~~~~ 224 (694)
T PRK15179 216 DAIGDGARK 224 (694)
T ss_pred HhhCcchHH
Confidence 766554443
No 111
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=4e-13 Score=110.50 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
++-+..-|.-++..++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++..+.++.++|....+|..+|.++.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34456678888888999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 306 (470)
..|++++|++.|+++++++|++...+.+|..+-..++...
T Consensus 161 ---------------------~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ---------------------ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---------------------ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 5889999999999999999999888888888777777665
No 112
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.3e-10 Score=99.45 Aligned_cols=272 Identities=16% Similarity=0.061 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAALLLC 246 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~ 246 (470)
....-|..-+..|+|.+|.+...+.-+..+....++..-+....++|+++.|-.++.++-+..+++. ......+.++.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll- 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL- 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-
Confidence 3444566677789999999999998888888777888888999999999999999999998854433 33444455554
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 326 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 326 (470)
..|+++.|..-..++++..|.++.+......+|...|++.+....+.+.-+..--+..-.
T Consensus 165 --------------------~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 165 --------------------NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred --------------------hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 799999999999999999999999999999999999999999998888776543322211
Q ss_pred H---HHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhh
Q 012143 327 Y---AVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 403 (470)
Q Consensus 327 ~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 403 (470)
. ..+...+-+........+.+. ............+|.+-..++.-+...|+.++|.+.....++......
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~-------~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLK-------TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHH-------HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 1 222221111111121122211 122222222224567888899999999999999999998877443333
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 404 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 404 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
...+ .-...-++...=++..++.+...|++|..+..||.++.+.+.|.+|..+|+.+++.-++.
T Consensus 298 L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 298 LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHHH-HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 2211 123466788899999999999999999999999999999999999999999999887664
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.50 E-value=4.5e-12 Score=115.96 Aligned_cols=219 Identities=18% Similarity=0.091 Sum_probs=181.7
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHH
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 120 (470)
.....++.. +...|-...|...+++ +..|-....||...|+..+|.....+-++.+|++
T Consensus 399 q~q~~lael-l~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~------------ 457 (777)
T KOG1128|consen 399 QLQRLLAEL-LLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDP------------ 457 (777)
T ss_pred hHHHHHHHH-HHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc------------
Confidence 344467777 8888999999999987 6788889999999999999999999888743332
Q ss_pred HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
..|..+| |+-.=-.+|+++.+... .+..+...+|......++|.++.++++..++++|-.
T Consensus 458 --------~lyc~LG-----------Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq 518 (777)
T KOG1128|consen 458 --------RLYCLLG-----------DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ 518 (777)
T ss_pred --------hhHHHhh-----------hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc
Confidence 1112222 22333344444444322 234577778888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
...|+.+|.+..+.++++.|.+.|.+++.++|++..+|.+++..+. +.++-.+|...+.
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi---------------------~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI---------------------RLKKKKRAFRKLK 577 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH---------------------HHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 6899999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 280 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 280 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
++++-+-++..+|.+...+....|.+++|+..|.+.+.+..
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999988999999999999999999999999999887643
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.50 E-value=4.1e-12 Score=122.89 Aligned_cols=212 Identities=11% Similarity=0.013 Sum_probs=158.0
Q ss_pred hcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 160 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 160 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
..+|.+..++..++..+...|++++|+..++.+++..|+....++.+|.++.+.+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----- 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----- 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----
Confidence 457899999999999999999999999999999999999999999999999999998877766 5555444332
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
++ .+++++...+...+++..+++.+|.||-++|++++|...|+++++.+
T Consensus 98 ------------------------------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D 146 (906)
T PRK14720 98 ------------------------------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD 146 (906)
T ss_pred ------------------------------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 23 34444444555566667778888888888888888888888888887
Q ss_pred CCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch
Q 012143 320 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM 399 (470)
Q Consensus 320 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 399 (470)
|+++. +..++|..+... +.++|...+.+++.
T Consensus 147 ~~n~~----------------------------------------------aLNn~AY~~ae~-dL~KA~~m~~KAV~-- 177 (906)
T PRK14720 147 RDNPE----------------------------------------------IVKKLATSYEEE-DKEKAITYLKKAIY-- 177 (906)
T ss_pred cccHH----------------------------------------------HHHHHHHHHHHh-hHHHHHHHHHHHHH--
Confidence 77654 344444455555 67777777666554
Q ss_pred hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHH--------------------HHHHHHHHHHcCChHHHHHHHH
Q 012143 400 EECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI--------------------WANLANAYYLTGDHRSSGKCLE 459 (470)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~ 459 (470)
.+...+++.++.+++++.+..+|++.+. +.-+-.+|...+++++++.+++
T Consensus 178 ----------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 178 ----------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred ----------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3555667788888888888887776544 2223377788888999999999
Q ss_pred HHHHhhccC
Q 012143 460 KVLMVYCSS 468 (470)
Q Consensus 460 ~al~~~~~~ 468 (470)
.+++.-+++
T Consensus 248 ~iL~~~~~n 256 (906)
T PRK14720 248 KILEHDNKN 256 (906)
T ss_pred HHHhcCCcc
Confidence 999877654
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.48 E-value=4.4e-12 Score=116.03 Aligned_cols=193 Identities=15% Similarity=0.158 Sum_probs=122.7
Q ss_pred CCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHH
Q 012143 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 151 (470)
Q Consensus 72 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 151 (470)
|..+..-..++..+...|-...|+..|++.-..+|. ..+| ...|+..+|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw~~v--------------------i~CY-----------~~lg~~~ka 443 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPV--------------------ILCY-----------LLLGQHGKA 443 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHH--------------------HHHH-----------HHhcccchH
Confidence 333445566777777777777777777775443221 1111 223334666
Q ss_pred HHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 152 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
..+..+-++ .|.++..|..+|++.....-|++|.++.+. .+..+...+|......++|+++..+++..++++|
T Consensus 444 eei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 444 EEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNY------ISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 666666666 555566666666666655555555554443 2334556666666666777777777777777777
Q ss_pred CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 012143 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311 (470)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 311 (470)
-....|+.+|.+.. +.+++..|.+.|.+++..+|++..+|.+++..|.+.|+-.+|...
T Consensus 517 lq~~~wf~~G~~AL---------------------qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 517 LQLGTWFGLGCAAL---------------------QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred cchhHHHhccHHHH---------------------HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 77777777766666 567777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCCcc
Q 012143 312 LEKAAKLEPNCM 323 (470)
Q Consensus 312 ~~~a~~~~p~~~ 323 (470)
++++++-+-++.
T Consensus 576 l~EAlKcn~~~w 587 (777)
T KOG1128|consen 576 LKEALKCNYQHW 587 (777)
T ss_pred HHHHhhcCCCCC
Confidence 777776664443
No 116
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.48 E-value=2.9e-12 Score=96.59 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=78.5
Q ss_pred hcC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 160 QSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 160 ~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
.+. ++.-+..+.+|..+...|++++|...|+-+...+|.+...|++||.++..+|++.+|+..|.+++.++|+++..+.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 5566677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
+.|.+++ ..|+.+.|.+.|+.++...
T Consensus 108 ~ag~c~L---------------------~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYL---------------------ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHH---------------------HcCCHHHHHHHHHHHHHHh
Confidence 7777766 5777777777777777665
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.47 E-value=1.8e-12 Score=97.65 Aligned_cols=109 Identities=14% Similarity=0.051 Sum_probs=102.6
Q ss_pred HhhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC
Q 012143 192 LLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 270 (470)
Q Consensus 192 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (470)
...+. ++..+..+.+|..++..|++++|...|+-+..++|.+...|+++|.++. ..|+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q---------------------~~g~ 84 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ---------------------AQKH 84 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---------------------HHhh
Confidence 34567 7888899999999999999999999999999999999999999999988 7999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 271 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 271 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
+.+|+..|.+++.++|+++..+.++|.++...|+.+.|.+.|+.++.....
T Consensus 85 ~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 85 WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999988743
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=1.6e-10 Score=101.55 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=137.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
.|....+++..+..++..|++++|+..+...+...|+|+..+...+.++. +.++.++|.
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~---------------------~~nk~~~A~ 360 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL---------------------EANKAKEAI 360 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCChHHHH
Confidence 37788899999999999999999999999999999999999888888887 799999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHH
Q 012143 276 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 355 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (470)
+.+++++..+|+.+..+.++|.++.+.|++.+|+..+++.+..+|+++
T Consensus 361 e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp-------------------------------- 408 (484)
T COG4783 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP-------------------------------- 408 (484)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc--------------------------------
Confidence 999999999999999999999999999999999999999999999865
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC
Q 012143 356 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 431 (470)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 431 (470)
..|..++..|..+|+..++...+.+ .+...|++++|+..+..+.+..
T Consensus 409 --------------~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 409 --------------NGWDLLAQAYAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --------------hHHHHHHHHHHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 4677778888888888777665443 7888899999999999888865
No 119
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.38 E-value=2.6e-11 Score=104.77 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=171.9
Q ss_pred cCcccHHHHHHHHHHhhhcCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+-.|+|..++..++ ....+| ........+.+++..+|+++..+...... .+....+...++..+...++.+.++.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHHH
Confidence 45688899998777 323333 34557778899999999998777655442 23345566777776666567777877
Q ss_pred HHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 222 CFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 222 ~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
.++..+..... ++...... |.++...|++++|++.+.+. .+.+.......++
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~---------------------A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~ 141 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLA---------------------ATILFHEGDYEEALKLLHKG-----GSLELLALAVQIL 141 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHH---------------------HHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHH---------------------HHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHH
Confidence 77766543322 22222222 33444789999999888764 5678888889999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHH
Q 012143 300 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 379 (470)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (470)
..+++++.|.+.++.+.+.+.+....... .+|.. +.
T Consensus 142 L~~~R~dlA~k~l~~~~~~~eD~~l~qLa-----------------------------------------~awv~---l~ 177 (290)
T PF04733_consen 142 LKMNRPDLAEKELKNMQQIDEDSILTQLA-----------------------------------------EAWVN---LA 177 (290)
T ss_dssp HHTT-HHHHHHHHHHHHCCSCCHHHHHHH-----------------------------------------HHHHH---HH
T ss_pred HHcCCHHHHHHHHHHHHhcCCcHHHHHHH-----------------------------------------HHHHH---HH
Confidence 99999999999999998887764322211 12222 12
Q ss_pred hccccHHHHHHHHHHHhcc--hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh-HHHHH
Q 012143 380 KTHHEVAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-RSSGK 456 (470)
Q Consensus 380 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~ 456 (470)
....++.+|...|+...+. ..+..+.+++.++...|+|++|...++++++.+|++++++.+++.+...+|+. +.+.+
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 2224678888888885553 34456779999999999999999999999999999999999999999999998 55666
Q ss_pred HHHHHHHhhcc
Q 012143 457 CLEKVLMVYCS 467 (470)
Q Consensus 457 ~~~~al~~~~~ 467 (470)
++.+.....|+
T Consensus 258 ~l~qL~~~~p~ 268 (290)
T PF04733_consen 258 YLSQLKQSNPN 268 (290)
T ss_dssp HHHHCHHHTTT
T ss_pred HHHHHHHhCCC
Confidence 77776655553
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.6e-10 Score=93.55 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=141.9
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
++..+|..|++++..-.+..|.+...+..+|.||....+|..|..+|++.-...|......+..+..+++.+.+.+|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcc-----------cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGS-----------VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
.........-.......-+.+.....+- ....+......|-+..+.|+++.|++-|+.+++...-.+-.
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 8766542111111111111111111000 01246667778889999999999999999999999888999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
-++++.++++.|++..|+++....++.
T Consensus 181 AYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 181 AYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999998887764
No 121
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.38 E-value=1.9e-11 Score=109.70 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
...|...+..|++++|+..|+++++++|+++.++..+|.++..+|++++|+..+++++.++|.++.+++.+|.++.
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~---- 81 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM---- 81 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH----
Confidence 3445555566666666666666666666666666666666666666666666666666666666666655555554
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
..|++++|+..|+++++++|+++.+...++.+...+
T Consensus 82 -----------------~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 82 -----------------KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -----------------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 456666666666666666666666655555554443
No 122
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=2.5e-08 Score=90.69 Aligned_cols=437 Identities=13% Similarity=0.069 Sum_probs=264.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcC-------CCCcchhhhcccchhhhh---cChhhHHHHHHHHHHhCCCCh-hHHHHH
Q 012143 13 KKINKLGKCRSRISSKMDSALEFG-------VDADGDQSGLGTSSSSRE---EKVSSLKTGLVHVARKMPKNA-HAHFLL 81 (470)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~p~~~-~~~~~l 81 (470)
.++.+.++..++. +.+...+..+ |.+-+.|..+... ..+. +.--.....++..+...|+.. ..|..|
T Consensus 177 e~L~~~d~~~eaa-~~la~vln~d~f~sk~gkSn~qlw~elcdl-is~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 177 EYLAKSDRLDEAA-QRLATVLNQDEFVSKKGKSNHQLWLELCDL-ISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHhccchHHHH-HHHHHhcCchhhhhhcccchhhHHHHHHHH-HHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 3456667777776 6676666543 3344455544433 2221 222223445556666666654 578899
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHhhhhc-------------------------ccchhhhHHHHHHhhh-------ccc
Q 012143 82 GLMYQRLGQPLKAVSSYEKAEEILLRCEA-------------------------DIARPELLSLVQIHHA-------QCL 129 (470)
Q Consensus 82 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------~~~~~~~~~~~~~~~~-------~~~ 129 (470)
|..|.+.|.+++|...|++++..-..-.+ ....+........+.. ...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999999999875211100 0000000000000000 000
Q ss_pred cc-----cccCCC-----ccccccCcccHHHHHHHHHHhhh-cCccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 012143 130 LP-----ESSGDN-----SLDKELEPEELEEILSKLKESMQ-SDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLL 193 (470)
Q Consensus 130 ~~-----~~~~~~-----~~~~~~~~~~~~~A~~~~~~~~~-~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 193 (470)
++ ...... .-..-+..|+..+-+..|..++. .+|.. ...|..+|..|...|+.+.|...|+++.
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 00 000000 00113355667777788877765 35543 3477888888888888888888888888
Q ss_pred hcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-HHH-----HHHHHHHhhhcccccccccchhhhh
Q 012143 194 AVDPN----NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA-ALI-----NYAALLLCKYGSVLAGAGANTGEGA 263 (470)
Q Consensus 194 ~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (470)
+..-. -..+|...|..-.+..+++.|+.+.+++... |..+. ..+ .-..++. ....|...++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhr--------SlkiWs~y~D 485 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHR--------SLKIWSMYAD 485 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHH--------hHHHHHHHHH
Confidence 76432 2467788888888888888888888887653 32221 000 0001111 2334555667
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHhhhcc
Q 012143 264 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC--MSTRYAVAVSRIKDAERSQ 341 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~ 341 (470)
.....|-++.....|++.+.+.--.|..-.+.|..+....-+++|.+.|++.+.+.|-. .+.|.......+.+...
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg-- 563 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG-- 563 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC--
Confidence 77788999999999999999988889999999999999999999999999999887532 22332221111111110
Q ss_pred CchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhcc----H
Q 012143 342 EPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASA----V 417 (470)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~ 417 (470)
..+..+..-+.+.+.... +...-.++...+..-.+-|....|+..|.++-......-.+.+-.+|...-. .
T Consensus 564 ---~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv 638 (835)
T KOG2047|consen 564 ---TKLERARDLFEQALDGCP--PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV 638 (835)
T ss_pred ---CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 111222222333333211 1123346777888888889999999999996654444333333333332111 2
Q ss_pred HHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 418 NVAKECLLAALKADPKA--AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 418 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
..-...|++|++.-|+. .......+..-.++|+.+.|..+|.-+-++.+.
T Consensus 639 ~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 639 PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 34567889999988876 455677888889999999999999988887743
No 123
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=2.2e-09 Score=110.80 Aligned_cols=318 Identities=14% Similarity=0.016 Sum_probs=214.4
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhc
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPK---------NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEA 110 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 110 (470)
+......+.. ....|+++++...+..+....+. .......+|.++...|++++|...+++++...+...
T Consensus 409 ~~l~~~~a~~-~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~- 486 (903)
T PRK04841 409 PRLVLLQAWL-AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTW- 486 (903)
T ss_pred cchHHHHHHH-HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-
Confidence 3344556666 77889999999999887654321 134556688899999999999999999998543321
Q ss_pred ccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc------chHHHHHHHHHHHHcCChHH
Q 012143 111 DIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQS 184 (470)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~ 184 (470)
..........++.+ +...|++++|...+++++..... ...++..+|.++...|++++
T Consensus 487 ------~~~~~~a~~~lg~~-----------~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~ 549 (903)
T PRK04841 487 ------YYSRIVATSVLGEV-----------HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQA 549 (903)
T ss_pred ------HHHHHHHHHHHHHH-----------HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 11111222233333 34567789999999999865332 13456778999999999999
Q ss_pred HHHHHHHHhhcCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccc
Q 012143 185 SISVLSSLLAVDPN--------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAG 256 (470)
Q Consensus 185 A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (470)
|...+++++..... ....+..+|.++...|++++|...+.+++.............+ +.
T Consensus 550 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~--~~----------- 616 (903)
T PRK04841 550 AYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC--LA----------- 616 (903)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH--HH-----------
Confidence 99999999875221 1234567889999999999999999999876432211111111 11
Q ss_pred cchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHH----HHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 257 ANTGEGACLDQASAVNVAKECLLAALKADPKA---AHIWA----NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
.+|.++...|++++|...+.++..+.+.. ..... .....+...|+.+.|...+.......+... +.
T Consensus 617 ---~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~--~~-- 689 (903)
T PRK04841 617 ---MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN--HF-- 689 (903)
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc--hh--
Confidence 13455568999999999999997753321 11111 122445567888888888766544222111 00
Q ss_pred HHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc--------hhh
Q 012143 330 AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK--------MEE 401 (470)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~ 401 (470)
....+..++.++...|++++|...+.+.+.. ...
T Consensus 690 --------------------------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 690 --------------------------------------LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred --------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 0123456788888899999999888886542 122
Q ss_pred hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 402 CAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
.++..+|.++...|+.++|...+.+++++....
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 457788999999999999999999999986544
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.35 E-value=9.6e-12 Score=111.64 Aligned_cols=104 Identities=8% Similarity=0.085 Sum_probs=99.1
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
.|++++.++|++......++.+..
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999998888777754
No 125
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.35 E-value=1.7e-11 Score=105.87 Aligned_cols=261 Identities=17% Similarity=0.117 Sum_probs=173.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCC-CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVD-ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
.-+-.+=+|+|..++ ...+ ....+|+ .......+.++ +...|+++..+..+.. ..+....+...++..+...+
T Consensus 7 ~vrn~fy~G~Y~~~i-~e~~-~~~~~~~~~~e~~~~~~Rs-~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCI-NEAS-LKSFSPENKLERDFYQYRS-YIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHHHCTT-HHHHC-HHHH-CHTSTCHHHHHHHHHHHHH-HHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTST
T ss_pred HHHHHHHhhhHHHHH-HHhh-ccCCCchhHHHHHHHHHHH-HHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCcc
Confidence 345566788888887 5454 2222222 33345566677 7788877765544432 23333455666666665444
Q ss_pred ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHH
Q 012143 90 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVW 169 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 169 (470)
+-+.++..++..+..... ...+ .. .+ ..|.+ +...|++++|++.+.+. .+.++.
T Consensus 81 ~~e~~l~~l~~~~~~~~~----~~~~-~~---~~--~~A~i-----------~~~~~~~~~AL~~l~~~-----~~lE~~ 134 (290)
T PF04733_consen 81 DKESALEELKELLADQAG----ESNE-IV---QL--LAATI-----------LFHEGDYEEALKLLHKG-----GSLELL 134 (290)
T ss_dssp THHCHHHHHHHCCCTS-------CHH-HH---HH--HHHHH-----------HCCCCHHHHHHCCCTTT-----TCHHHH
T ss_pred chHHHHHHHHHHHHhccc----cccH-HH---HH--HHHHH-----------HHHcCCHHHHHHHHHcc-----CcccHH
Confidence 555555555443321100 0001 11 11 11111 34678889999888765 456777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--DMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 247 (470)
.....++...++++.|.+.++.+.+.+.+..-+....+++....| .+.+|...|+......|.++..+..++.++.
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-- 212 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-- 212 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH--
Confidence 788889999999999999999999888887777777777777766 5899999999988877777777777777776
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHhcCCCccc
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-RSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~p~~~~ 324 (470)
..|++++|.+.+.+++..+|+++.++.+++.+....|+. +.+.+++.+....+|+++.
T Consensus 213 -------------------~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 213 -------------------QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp -------------------HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred -------------------HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 799999999999999999999999999999999999998 5566788888888888764
No 126
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=8.4e-11 Score=97.78 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhh
Q 012143 182 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGE 261 (470)
Q Consensus 182 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 261 (470)
.+.-+.-++.-+..+|++...|..||.+|+.+|+++.|...|.+++++.|+++..+..++.++..+.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a------------- 204 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA------------- 204 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------------
Confidence 4556667777788899999999999999999999999999999999999999999988888887532
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccH
Q 012143 262 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 262 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
......++...|++++..+|.++.+.+.||..++..|+|.+|+..++..+...|.+..-
T Consensus 205 -----~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 205 -----GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred -----CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 23455788999999999999999999999999999999999999999999998876653
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.33 E-value=5.8e-10 Score=94.08 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=133.4
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHH---HHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcC--
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVV---WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSG-- 214 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g-- 214 (470)
+..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|++ +.+++.+|.++...+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 56789999999999999999988654 4899999999999999999999999998876 457899998865543
Q ss_pred -------------C---HHHHHHHHHHHHhhCCCChHHH---HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 215 -------------D---MEQSAKCFQDLILKDQNHPAAL---INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 215 -------------~---~~~A~~~~~~~l~~~p~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
+ ..+|+..|++.++..|+..-+- ..+..+.... +..-+.+|..|.+.|.|.-|+
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l-------a~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL-------AKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCchHHHH
Confidence 1 3578899999999999875432 2222222111 223345789999999999999
Q ss_pred HHHHHHHhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 276 ECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 276 ~~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
.-++.+++..|+ ..+++..++.+|..+|..++|.......
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999887 5678899999999999999998876543
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=1.8e-10 Score=101.34 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=130.5
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++...|+..+|.+.+++++.++|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
.+. +.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+.......-
T Consensus 383 all---------------------~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 383 ALL---------------------KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred HHH---------------------hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 988 79999999999999999999999999999999999999999998888887776553
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.30 E-value=6.3e-10 Score=91.77 Aligned_cols=174 Identities=19% Similarity=0.193 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
+..++..|..++..|++.+|+..|++++...|.+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---------------------------------------------- 38 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS---------------------------------------------- 38 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS----------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----------------------------------------------
Confidence 4566666777777777777777777666654432
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHc-----------CCHHHHH
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQS-----------GDMEQSA 220 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~-----------g~~~~A~ 220 (470)
|.-+.+.+.+|.+++..|++++|+..+++.++..|+++ .+++.+|.+++.+ +...+|+
T Consensus 39 --------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 39 --------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp --------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 22356788888899999999999999999988888764 4788888876554 3345899
Q ss_pred HHHHHHHhhCCCChHHHH---HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 012143 221 KCFQDLILKDQNHPAALI---NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA---AHIWAN 294 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 294 (470)
..|+..+...|++..+-. .+..+.... +..-+.+|..|.+.|.+..|+..++.+++..|+. ..++..
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~l-------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~ 183 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNRL-------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALAR 183 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 999999999998865432 222221111 2334457888999999999999999999999985 457888
Q ss_pred HHHHHHHcCChhHHH
Q 012143 295 LANAYYLTGDHRSSG 309 (470)
Q Consensus 295 la~~~~~~g~~~~A~ 309 (470)
++.+|..+|..+.|.
T Consensus 184 l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 184 LAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHTT-HHHHH
T ss_pred HHHHHHHhCChHHHH
Confidence 899999999988543
No 130
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.29 E-value=2.6e-10 Score=91.42 Aligned_cols=130 Identities=13% Similarity=0.176 Sum_probs=101.2
Q ss_pred CcccHHHHHHHHHHhhhcCccc--hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~ 218 (470)
-.+.+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e 90 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK 90 (168)
T ss_pred cccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence 3344666777776666555544 6678999999999999999999999999887663 4589999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHH-------HHHHHHHHHHhcCCC
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN-------VAKECLLAALKADPK 287 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~~~~~~p~ 287 (470)
|+..+++++.++|.....+..++.++.. +|..+...|+++ +|+.++++++..+|.
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~~--------------~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICHY--------------RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHH--------------hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999988874 344445566655 444444445555554
No 131
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.27 E-value=2e-11 Score=81.53 Aligned_cols=67 Identities=31% Similarity=0.610 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p 231 (470)
++..|..+|.+++..|++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57889999999999999999999999999999999999999999999999 79999999999999988
No 132
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.27 E-value=2.7e-09 Score=90.14 Aligned_cols=313 Identities=16% Similarity=0.109 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHH
Q 012143 77 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 156 (470)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 156 (470)
-...-|.-++...++.+|+..+.+.+....+. ......+ | .+. ....+.|.+++++..--
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~---------~~Rf~~l---G----~l~----~a~s~~g~y~~mL~~a~ 67 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDL---------MGRFRVL---G----CLV----TAHSEMGRYKEMLKFAV 67 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHH---------HHHHHHh---c----cch----hhhhhhHHHHHHHHHHH
Confidence 44556667778888888988888888753221 1111111 1 111 11445666777766544
Q ss_pred HhhhcCc------cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 157 ESMQSDT------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----DCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 157 ~~~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
..+.... ...+++.+++..+...-++.+++.+-+..+.+....+ .+...+|..+..++.++++++.|+.
T Consensus 68 sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~ 147 (518)
T KOG1941|consen 68 SQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEK 147 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHH
Confidence 3333211 1245788999999999999999999998887644333 5677799999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC----------CHHHHHHH
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------AAHIWANL 295 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----------~~~~~~~l 295 (470)
+++...++.+.... ......+|..+.+..++++|.-+..++.++... ...+.+.+
T Consensus 148 A~~~A~~~~D~~LE---------------lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhm 212 (518)
T KOG1941|consen 148 ALRYAHNNDDAMLE---------------LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHM 212 (518)
T ss_pred HHHHhhccCCceee---------------eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHH
Confidence 99876554443222 223334566777899999999999999887433 23467888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHH
Q 012143 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 375 (470)
Q Consensus 296 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 375 (470)
+..+..+|..-+|.++.+++.++.-...+- +........+
T Consensus 213 aValR~~G~LgdA~e~C~Ea~klal~~Gdr----------------------------------------a~~arc~~~~ 252 (518)
T KOG1941|consen 213 AVALRLLGRLGDAMECCEEAMKLALQHGDR----------------------------------------ALQARCLLCF 252 (518)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCCh----------------------------------------HHHHHHHHHH
Confidence 999999999999999999988764322110 0112356678
Q ss_pred HHHHhccccHHHHHHHHHHHhcc--------hhhhhHhhHHHHHHHhccHHH-----HHHHHHHHHhcCCCc------HH
Q 012143 376 AAVQKTHHEVAAAFETEENELSK--------MEECAGAGESAFLDQASAVNV-----AKECLLAALKADPKA------AH 436 (470)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~-----A~~~~~~al~~~p~~------~~ 436 (470)
|++|...|+.+.|...|+.+... ....+..+.+.++....-..+ |+++-++++++...- ..
T Consensus 253 aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK 332 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLK 332 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHH
Confidence 88999999999998888885542 223556677777766555555 888888888764332 35
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
.+..++.+|..+|..++=...+.++-+.
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 6788999999999888877777665443
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.27 E-value=1.8e-09 Score=89.01 Aligned_cols=186 Identities=20% Similarity=0.196 Sum_probs=123.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 238 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~ 238 (470)
.+..++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++..|+++. +++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35678888999999999999999999998887765 567888999999999999999999999988888764 344
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.+|.++.. . ....+ ......+...+|+..|+..+..
T Consensus 84 ~~g~~~~~---------------------~---------~~~~~--------------~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 84 MLGLSYYK---------------------Q---------IPGIL--------------RSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHHHHH---------------------H---------HHHHH---------------TT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------------------h---------Cccch--------------hcccChHHHHHHHHHHHHHHHH
Confidence 44443331 0 00000 2234455677899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
.|++..+...... + ..+ ..
T Consensus 120 yP~S~y~~~A~~~--l-----------------------------------------~~l------------------~~ 138 (203)
T PF13525_consen 120 YPNSEYAEEAKKR--L-----------------------------------------AEL------------------RN 138 (203)
T ss_dssp -TTSTTHHHHHHH--H-----------------------------------------HHH------------------HH
T ss_pred CcCchHHHHHHHH--H-----------------------------------------HHH------------------HH
Confidence 9997643321110 0 000 00
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHH
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSG 455 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 455 (470)
.-..--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++.+|.++|..+.|.
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 011122345668888999999999999999999987 467899999999999988554
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3e-10 Score=94.52 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=114.1
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC---CHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKC 222 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~ 222 (470)
...+.-+.-++..+..+|+|++-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++.+. ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 446788889999999999999999999999999999999999999999999999999999999987654 46789999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
+++++..+|.+..+.+.++..++ +.|+|.+|+..++..++..|.+..
T Consensus 216 l~~al~~D~~~iral~lLA~~af---------------------e~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAF---------------------EQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999998887 799999999999999999887543
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.26 E-value=2.4e-10 Score=86.23 Aligned_cols=107 Identities=23% Similarity=0.336 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALIN 239 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~ 239 (470)
++.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4577888999999999999999999999888776 5688889999999999999999999999888875 456666
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
++.++. ..|++++|+.++.+++...|++..+..
T Consensus 82 ~~~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQ---------------------ELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHH---------------------HhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 666665 688999999999999999888765543
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.25 E-value=6.3e-09 Score=87.84 Aligned_cols=198 Identities=15% Similarity=0.106 Sum_probs=118.0
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH---HH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC---IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA---LI 238 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~ 238 (470)
.+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++.+ ++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45556666777777777777777777777776666443 3666777777777777777777777776666533 22
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.+|.+.. ..+ ...+..-..++ .....+....+|+..|++.++.
T Consensus 111 ~~g~~~~---------------------~~~-----~~~~~~~~~~~-----------~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 111 MRGLTNM---------------------ALD-----DSALQGFFGVD-----------RSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred HHHHhhh---------------------hcc-----hhhhhhccCCC-----------ccccCHHHHHHHHHHHHHHHHH
Confidence 2222211 000 00000000000 0111122245788999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
.|+..-+... . ..+..+...
T Consensus 154 yP~S~ya~~A--~-----------------------------------------~rl~~l~~~----------------- 173 (243)
T PRK10866 154 YPNSQYTTDA--T-----------------------------------------KRLVFLKDR----------------- 173 (243)
T ss_pred CcCChhHHHH--H-----------------------------------------HHHHHHHHH-----------------
Confidence 9986432211 1 111111000
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHH
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEK 460 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 460 (470)
-..--+.+|..|.+.|.|..|+.-++.+++..|+. .++++.++..|..+|..++|......
T Consensus 174 -la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 -LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred -HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 01112345667888899999999999999988875 68899999999999999999887653
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.23 E-value=4.4e-10 Score=90.40 Aligned_cols=84 Identities=18% Similarity=0.356 Sum_probs=76.1
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
.|....+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34557789999999999999999999999999887654 468999999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 012143 239 NYAALLL 245 (470)
Q Consensus 239 ~l~~~~~ 245 (470)
.+|.++.
T Consensus 111 ~lg~~~~ 117 (172)
T PRK02603 111 NIAVIYH 117 (172)
T ss_pred HHHHHHH
Confidence 8888887
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.23 E-value=4.4e-10 Score=84.77 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
++.++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++. ..|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~ 60 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY---------------------AQGKYADAAK 60 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH---------------------hhccHHHHHH
Confidence 4678999999999999999999999999999876 456666777766 7999999999
Q ss_pred HHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccH
Q 012143 277 CLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 277 ~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
.|++++...|++ +.++..+|.++...|++++|+.++++++...|++..+
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 999999998885 6789999999999999999999999999999997653
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.21 E-value=6.5e-11 Score=79.07 Aligned_cols=66 Identities=26% Similarity=0.182 Sum_probs=62.2
Q ss_pred hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhhc
Q 012143 401 ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG-DHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 466 (470)
+..|..+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+| ++++|+.+|++++++-|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4568889999999999999999999999999999999999999999999 79999999999999865
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.21 E-value=4.9e-11 Score=83.00 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=73.0
Q ss_pred cccHHHHHHHHHHhhhcCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
+|++++|+..+++++..+|. +...++.+|.++++.|++++|+..+++ ...+|.++...+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999999995 566788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 012143 223 FQDL 226 (470)
Q Consensus 223 ~~~~ 226 (470)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.21 E-value=9.7e-10 Score=85.52 Aligned_cols=117 Identities=13% Similarity=0.088 Sum_probs=93.6
Q ss_pred CcccHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~ 217 (470)
..++...+...+++.+..+|+. ..+.+.+|.+++..|++++|...|++++...|+. +.+...+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3566788888899999988887 5678889999999999999999999999987654 457889999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 218 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
+|+..++.. ...+..+..+..+| .++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~G---------------------di~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLG---------------------DIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHH---------------------HHHHHCCCHHHHHHHHHHhC
Confidence 999999763 22333334444444 45558999999999999874
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.19 E-value=1.1e-10 Score=76.73 Aligned_cols=65 Identities=22% Similarity=0.394 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999875
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.18 E-value=2.1e-09 Score=100.52 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=115.4
Q ss_pred CccchHHH--HHHHHHHHHcCC---hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q 012143 162 DTRQAVVW--NTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--------DMEQSAKCFQDLIL 228 (470)
Q Consensus 162 ~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~l~ 228 (470)
.|.++.+| +..|.-+...++ ...|+.+|+++++++|++..++..++.++.... +...+....++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35555544 456766766554 789999999999999999999999988876542 24456666666665
Q ss_pred h--CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 012143 229 K--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 229 ~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 306 (470)
+ +|.++.++..++.... ..|++++|...+++++.++| +..+|..+|.++...|+++
T Consensus 413 l~~~~~~~~~~~ala~~~~---------------------~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 413 LPELNVLPRIYEILAVQAL---------------------VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred cccCcCChHHHHHHHHHHH---------------------hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH
Confidence 4 6777777777776665 58999999999999999999 4889999999999999999
Q ss_pred HHHHHHHHHHhcCCCcccH
Q 012143 307 SSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~ 325 (470)
+|++.|++++.++|.++..
T Consensus 471 eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 471 LAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHhcCCCCchH
Confidence 9999999999999998853
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.18 E-value=2.7e-09 Score=83.02 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=98.5
Q ss_pred HHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhhhcc
Q 012143 177 LKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGS 250 (470)
Q Consensus 177 ~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~ 250 (470)
...+++..+...++..+...|+. ..+.+.+|.+++..|++++|...|+.++...|+.. .+...++.++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~------ 95 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL------ 95 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH------
Confidence 36889999999999999999988 56788899999999999999999999999776542 2344445444
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
...|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 96 ---------------~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 96 ---------------LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---------------HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 489999999999976 33445567889999999999999999999999875
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=5.5e-10 Score=80.69 Aligned_cols=97 Identities=30% Similarity=0.428 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
++.+|.++...|++++|+..+++++...|.+...+..++.++. ..+++++|+.++++++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY---------------------KLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 3444444444555555555555554444444444444444433 3444555555555555
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
...|.+..++..+|.++...|++++|...+.+++...|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred hCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 55555445555555555555555555555555554443
No 146
>PRK11906 transcriptional regulator; Provisional
Probab=99.17 E-value=2.1e-09 Score=95.23 Aligned_cols=150 Identities=12% Similarity=0.144 Sum_probs=125.5
Q ss_pred ccHHHHHHHHHHhh---hcCccchHHHHHHHHHHHHc---------CChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 012143 146 EELEEILSKLKESM---QSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 146 ~~~~~A~~~~~~~~---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 213 (470)
...+.|+.+|.+++ ..+|+.+.++..++.|++.. ....+|....+++++++|.++.++..+|.+....
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 45688999999999 89999999999999998765 2346788889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
++++.|...|++++.++|+.+.+++..|.+.. -.|+.++|++.++++++++|....+-.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~---------------------~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHF---------------------HNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 99999999999999999999999999888877 689999999999999999998655544
Q ss_pred HHHHH-HHHcCChhHHHHHHHHHH
Q 012143 294 NLANA-YYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 294 ~la~~-~~~~g~~~~A~~~~~~a~ 316 (470)
..-.+ .+.....++|+..|-+-.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 411 IKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHcCCchhhhHHHHhhcc
Confidence 44444 445566788888776543
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=5.4e-10 Score=80.70 Aligned_cols=99 Identities=24% Similarity=0.370 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 247 (470)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+...+..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-- 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH--
Confidence 567888999999999999999999999999888889999999999999999999999999998888877777777776
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
..|++++|...+.+++...|+
T Consensus 80 -------------------~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 -------------------KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred -------------------HHHhHHHHHHHHHHHHccCCC
Confidence 688899999999998887763
No 148
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=3.3e-09 Score=83.07 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35567778888888888888888888888888888888888888888888888888888888888888877777776665
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
. --|++.-|.+-+.+-.+.+|++|.--..+-..-. .-++.+|...+
T Consensus 144 Y---------------------Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~-k~dP~~A~tnL 189 (297)
T COG4785 144 Y---------------------YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ-KLDPKQAKTNL 189 (297)
T ss_pred e---------------------ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh-hCCHHHHHHHH
Confidence 5 4778888888888888888877653333222222 22455555444
No 149
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=7.4e-09 Score=81.14 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.+...+|..+. ..|+++.|.+.|
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~---------------------~a~~fdaa~eaF 122 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT---------------------QAGNFDAAYEAF 122 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH---------------------hcccchHHHHHh
Confidence 35678888999999999999999999999999999999999888777 799999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
...++++|.+-.++.+.|..++.-|++.-|.+.+.+..+.+|+++.
T Consensus 123 ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 123 DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999999999999874
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.15 E-value=2.1e-09 Score=93.84 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=101.6
Q ss_pred cHHHHHHHHHHhhhcCcc------chHHHHHHHHHHHHc-CChHHHHHHHHHHhhcCCC--C----hHHHHHHHHHHHHc
Q 012143 147 ELEEILSKLKESMQSDTR------QAVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPN--N----CDCIGNLGIAYFQS 213 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~--~----~~~~~~la~~~~~~ 213 (470)
++++|+.++++++...-. -..++..+|.+|... |++++|+++|++++++... . ..++..+|.++...
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 556777777776654211 145778899999999 9999999999999987321 1 35788999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH----
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---- 289 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---- 289 (470)
|+|++|++.|+++....-++....+.....++ ..+.++...|++..|...+++....+|...
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l--------------~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL--------------KAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH--------------HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 99999999999998754332221112222211 123455578999999999999999988632
Q ss_pred -HHHHHHHHHHH--HcCChhHHHHHHHHHHhcCC
Q 012143 290 -HIWANLANAYY--LTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 290 -~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~p 320 (470)
.....|-.++- ....++.|+.-|++..+++|
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 23333333332 23346677777766655544
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.12 E-value=1.4e-08 Score=88.57 Aligned_cols=184 Identities=17% Similarity=0.153 Sum_probs=124.6
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
.|.+|...|++++|...|.++....- +.++...|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~-------------------------------------~~~~~~~A--------- 74 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYE-------------------------------------KLGDKFEA--------- 74 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHH-------------------------------------HTT-HHHH---------
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHH-------------------------------------HcCCHHHH---------
Confidence 47788888888888888888876521 11111222
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--C----ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--N----NCDCIGNLGIAYFQS-GDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~----~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~ 233 (470)
...+...+.++... ++++|+.+|++++.+.- . -..++..+|.+|... |++++|+++|++++.+....
T Consensus 75 -----a~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 75 -----AKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp -----HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 23444555565554 88888888888887622 1 145788999999998 99999999999999875433
Q ss_pred hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCChh
Q 012143 234 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-------AAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~g~~~ 306 (470)
... .....++. .+|.++.+.|+|++|++.|++.....-+ ....++..+.++...|++.
T Consensus 149 ~~~-~~a~~~~~--------------~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v 213 (282)
T PF14938_consen 149 GSP-HSAAECLL--------------KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYV 213 (282)
T ss_dssp T-H-HHHHHHHH--------------HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH
T ss_pred CCh-hhHHHHHH--------------HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHH
Confidence 221 22222222 2466677999999999999999875432 1234567788999999999
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 307 SSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
.|...+++....+|......-...+
T Consensus 214 ~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 214 AARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 9999999999999987665444333
No 152
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.12 E-value=2.1e-09 Score=86.13 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=97.7
Q ss_pred CChHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhhhcccccc
Q 012143 180 GRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~~~ 254 (470)
+.+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+.. .++.++|.++.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~--------- 83 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT--------- 83 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH---------
Confidence 44566666666655555554 56789999999999999999999999998877633 35666666665
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCChh-------HHHHHHHHHHhcCC
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY-------LTGDHR-------SSGKCLEKAAKLEP 320 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~a~~~~p 320 (470)
..|++++|+..+++++.+.|.....+..+|.++. ..|+++ +|+.+|++++..+|
T Consensus 84 ------------~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 84 ------------SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred ------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 7999999999999999999999999999999998 777766 56666667777787
Q ss_pred Ccc
Q 012143 321 NCM 323 (470)
Q Consensus 321 ~~~ 323 (470)
.+.
T Consensus 152 ~~~ 154 (168)
T CHL00033 152 GNY 154 (168)
T ss_pred ccH
Confidence 644
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.12 E-value=3.7e-10 Score=74.26 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=58.5
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 406 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 406 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++++++.|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 567899999999999999999999999999999999999999999999999999999998864
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.12 E-value=1.6e-09 Score=87.20 Aligned_cols=105 Identities=17% Similarity=0.256 Sum_probs=90.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 273 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (470)
+....+++.+|.++...|++++|+.+|++++...|+.. ..+..+|.++. ..|++++
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~ 90 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA---------------------SNGEHDK 90 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---------------------HcCCHHH
Confidence 35567899999999999999999999999998877643 45556665555 8999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------hhHHHHHHHHHHhcCCCc
Q 012143 274 AKECLLAALKADPKAAHIWANLANAYYLTGD--------------HRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 274 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~a~~~~p~~ 322 (470)
|+.++.+++...|+++..+..+|.++...|+ +++|++++++++..+|++
T Consensus 91 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 91 ALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999999999999999999888 577888888888888886
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=99.11 E-value=5.7e-09 Score=92.62 Aligned_cols=180 Identities=11% Similarity=0.061 Sum_probs=140.1
Q ss_pred hcCCCCc---chh----hhcccchhhh---hcChhhHHHHHHHHH---HhCCCChhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 34 EFGVDAD---GDQ----SGLGTSSSSR---EEKVSSLKTGLVHVA---RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 34 ~~~p~~~---~~~----~~~~~~~~~~---~~~~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
...|.+. .+| +..|.. ... ......|...|.+++ ..+|..+.++..++.|++..- +
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~-~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~--------~-- 310 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKK-ELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA--------L-- 310 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHH-HhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH--------H--
Confidence 3335555 455 566665 432 346778888999999 999999999999999987530 0
Q ss_pred HHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC
Q 012143 101 AEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180 (470)
Q Consensus 101 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 180 (470)
.... -...+..+|.+..+++++.+|.|+.++..+|.+....+
T Consensus 311 -~g~~-------------------------------------~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 311 -HGKS-------------------------------------ELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred -hcCC-------------------------------------CchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 0000 01223478899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH--HHHhhhcccccccccc
Q 012143 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA--LLLCKYGSVLAGAGAN 258 (470)
Q Consensus 181 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~--~~~~~~~~~~~~~~~~ 258 (470)
+++.|...|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-...-. .|.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~------------- 419 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV------------- 419 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-------------
Confidence 99999999999999999999999999999999999999999999999999987665433222 232
Q ss_pred hhhhhHHHhcCCHHHHHHHHHHHHhc
Q 012143 259 TGEGACLDQASAVNVAKECLLAALKA 284 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 284 (470)
....++|+..|-+-.+.
T Consensus 420 ---------~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 420 ---------PNPLKNNIKLYYKETES 436 (458)
T ss_pred ---------CCchhhhHHHHhhcccc
Confidence 45578888887765443
No 156
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5.1e-09 Score=90.55 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHH
Q 012143 76 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 155 (470)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 155 (470)
......|..+++.|+|..|...|++++........ -+.++... .
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~-----------------------------------~~~ee~~~-~ 252 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS-----------------------------------FDEEEQKK-A 252 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc-----------------------------------CCHHHHHH-H
Confidence 34556799999999999999999999986432110 00011111 0
Q ss_pred HHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 012143 156 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 156 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 235 (470)
.. --..++.+++.|+.++++|..|+..+.++|.++|++..+++..|.++..+|+++.|+..|+++++++|+|..
T Consensus 253 ~~------~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 253 EA------LKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HH------HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 00 113578899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 012143 236 ALINYAALLL 245 (470)
Q Consensus 236 ~~~~l~~~~~ 245 (470)
+...+..+..
T Consensus 327 ~~~el~~l~~ 336 (397)
T KOG0543|consen 327 ARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHH
Confidence 8887777665
No 157
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.09 E-value=2.5e-08 Score=98.21 Aligned_cols=222 Identities=16% Similarity=0.117 Sum_probs=180.1
Q ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHH-hhhhcccchhhhHHHHHHhhhccccccccCC
Q 012143 58 SSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL-LRCEADIARPELLSLVQIHHAQCLLPESSGD 136 (470)
Q Consensus 58 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (470)
.+..+.|++.+.-+|+..-.|...-..+.+.++.++|.+.+++|+..- +..+ .+-+ .+|.++-.+....
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe-----eEKL---NiWiA~lNlEn~y-- 1510 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE-----EEKL---NIWIAYLNLENAY-- 1510 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh-----HHHH---HHHHHHHhHHHhh--
Confidence 345667888888899999999999999999999999999999999752 2211 1112 2232222222222
Q ss_pred CccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCH
Q 012143 137 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 137 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 216 (470)
|.-+.-.+.|+++.+.. +-..++..|..+|...+.+++|.++|+..++...+...+|..+|..++++++-
T Consensus 1511 ---------G~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1511 ---------GTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred ---------CcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH
Confidence 33367778888888764 23467888999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 217 EQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
+.|...+.+++..-|. +.......+.+-+ +.|+.+.+...|+..+..+|...+.|.-
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF---------------------k~GDaeRGRtlfEgll~ayPKRtDlW~V 1639 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFISKFAQLEF---------------------KYGDAERGRTLFEGLLSAYPKRTDLWSV 1639 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHh---------------------hcCCchhhHHHHHHHHhhCccchhHHHH
Confidence 9999999999999998 5555544454444 8999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 295 LANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 295 la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
....-.+.|+.+.+...|++++.+.-
T Consensus 1640 Yid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1640 YIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998653
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.08 E-value=4.1e-09 Score=89.45 Aligned_cols=96 Identities=14% Similarity=0.212 Sum_probs=88.0
Q ss_pred cCcccHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHcCCH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~ 216 (470)
++.|++++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.+|.++..+|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 45688999999999999999988 579999999999999999999999999988776 478999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
++|+..|+++++..|+...+..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHHHHHHCcCCHHHHH
Confidence 9999999999999999876543
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.07 E-value=8.4e-09 Score=96.58 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=107.0
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC--------ChHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHc
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--------RLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~ 213 (470)
..+++..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.+ +|.++.++..+|..+...
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 3466789999999999999999999999888876642 234566666676664 777788999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
|++++|...+++++.++| +..++..+|.++. ..|++++|++.|++++.++|.++..
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~---------------------~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE---------------------LKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999999 4778888887776 7999999999999999999997753
No 160
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.8e-09 Score=90.21 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC----C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPN----N-----------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
......|..+++.|+|..|...|++++..-+. + ..++.+++.|+.++++|.+|+....++|.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 34556799999999999999999998875321 1 24789999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH-HH
Q 012143 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS-GK 310 (470)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A-~~ 310 (470)
+|..+++..|.++. ..|+++.|+..|+++++++|+|-.+...+..+-.+..++.+. .+
T Consensus 289 ~N~KALyRrG~A~l---------------------~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 289 NNVKALYRRGQALL---------------------ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred CchhHHHHHHHHHH---------------------hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888 699999999999999999999999999999988887776654 77
Q ss_pred HHHHHHhcCCC
Q 012143 311 CLEKAAKLEPN 321 (470)
Q Consensus 311 ~~~~a~~~~p~ 321 (470)
.|.+++...+.
T Consensus 348 ~y~~mF~k~~~ 358 (397)
T KOG0543|consen 348 MYANMFAKLAE 358 (397)
T ss_pred HHHHHhhcccc
Confidence 88888876553
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.07 E-value=5.3e-10 Score=77.77 Aligned_cols=82 Identities=28% Similarity=0.403 Sum_probs=70.9
Q ss_pred HcCChHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccccc
Q 012143 178 KSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 255 (470)
Q Consensus 178 ~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 255 (470)
.+|++++|+..++++++.+|. +...++.+|.++++.|++++|+..+++ ...+|.+....+.+|.++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~---------- 69 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL---------- 69 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH----------
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH----------
Confidence 368999999999999999995 466788899999999999999999999 8888888888777777776
Q ss_pred ccchhhhhHHHhcCCHHHHHHHHHHH
Q 012143 256 GANTGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
+.|++++|+++|+++
T Consensus 70 -----------~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 -----------KLGKYEEAIKALEKA 84 (84)
T ss_dssp -----------HTT-HHHHHHHHHHH
T ss_pred -----------HhCCHHHHHHHHhcC
Confidence 799999999999875
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=99.07 E-value=6.4e-09 Score=78.99 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=82.7
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
..+.++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 33455556677778888888888888888888888888888888888888888888888888888888888887777777
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
..|.+++ ..|+.+.|+.+|..++. .|.
T Consensus 110 ~agqC~l---------------------~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 110 FTGQCQL---------------------LMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred hHHHHHH---------------------HhCCHHHHHHHHHHHHh-Ccc
Confidence 7776666 67888888888888777 344
No 163
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.04 E-value=1.2e-08 Score=74.79 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN---HPAALIN 239 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~ 239 (470)
+.+++.+|.++-..|+.++|+..|++++...... ..+++.+|.++..+|++++|+..+++.+...|+ +......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3567888889999999999999999998875443 567888999999999999999999998888777 5555555
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
++.++. ..|++++|+..+..++.
T Consensus 81 ~Al~L~---------------------~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALY---------------------NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHH---------------------HCCCHHHHHHHHHHHHH
Confidence 555555 68888888888877764
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.03 E-value=6.1e-07 Score=77.45 Aligned_cols=222 Identities=26% Similarity=0.230 Sum_probs=170.6
Q ss_pred ccHHHHHHHHHHhhhcCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3457777778888777776 367888889999999999999999999987 688888899999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHH-HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAA-LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP---KAAHIWANLAN 297 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~ 297 (470)
.+..++...+........... ++ ...|+++.|...+.+++...| .........+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGAL---------------------YELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHH---------------------HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 999999887776444333333 33 378999999999999988776 45666777777
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 377 (470)
.+...++++.|+..+.+++...+.. ....+..++.
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~ 210 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDD---------------------------------------------DAEALLNLGL 210 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccc---------------------------------------------chHHHHHhhH
Confidence 7888899999999999999888774 1235556666
Q ss_pred HHhccccHHHHHHHHHHHhcchh--hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 012143 378 VQKTHHEVAAAFETEENELSKME--ECAGAGESAFLDQASAVNVAKECLLAALKADPK 433 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 433 (470)
.+...+++..|+..+...+...+ ...+...+..+...+.++++...+.+++...|.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666777777777777665444 345556666666666688888888888887776
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=99.02 E-value=4.5e-09 Score=79.84 Aligned_cols=108 Identities=12% Similarity=0.152 Sum_probs=98.7
Q ss_pred HhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH
Q 012143 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271 (470)
Q Consensus 192 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (470)
+..+.++..+..+..|.-++..|++++|...|+-....+|.++..+..+|.++. ..++|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q---------------------~~k~y 87 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ---------------------LKKQF 87 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH---------------------HHHHH
Confidence 334566667788999999999999999999999999999999999999888887 69999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 272 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 272 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
++|+..|..+..++++++...+..|.|+..+|+.+.|+.+|+.++. .|.
T Consensus 88 ~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 88 QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 9999999999999999999999999999999999999999999998 344
No 166
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.01 E-value=4.4e-10 Score=94.07 Aligned_cols=179 Identities=9% Similarity=-0.007 Sum_probs=133.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
|+++|.|++|+.+|.+++..+|.++..+.+.+.+|+++..+..|...+..++.++.....+|...|..-..+|+..+|.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccc--------------cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAG--------------AGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++.++++.|++.+....++.+-.-........ .-..-.-|..+...|.++.++.++.+.+....+
T Consensus 187 D~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~ 266 (536)
T KOG4648|consen 187 DCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDD 266 (536)
T ss_pred hHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCc
Confidence 999999999998877666555433221111100 000112355566666777777766666555444
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 288 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
+.....+ +..+.+..+++.++.-.-+++..+|.
T Consensus 267 ~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s 299 (536)
T KOG4648|consen 267 SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPT 299 (536)
T ss_pred cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCC
Confidence 3333333 55555666666666655555555444
No 167
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.01 E-value=2.2e-07 Score=78.90 Aligned_cols=244 Identities=15% Similarity=0.040 Sum_probs=166.8
Q ss_pred hhhcccchhhhhcChhhHHHHHHHHHHhCCCCh---hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHH
Q 012143 43 QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA---HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS 119 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 119 (470)
....|.- ++...+.++|+....+.+..-.+.. ..+-.+..+...+|.+++++.+--..+....+- .+...
T Consensus 9 q~~~g~~-Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~------~ds~~ 81 (518)
T KOG1941|consen 9 QIEKGLQ-LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL------EDSDF 81 (518)
T ss_pred HHHHHHh-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 4455666 7777788888888887776543332 244455667778888887766554444432211 11222
Q ss_pred HHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 012143 120 LVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLA 194 (470)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 194 (470)
...++.+++..+. +..++.+++.+.+.-+...... ..+...+|.++..++.++++++.|+++++
T Consensus 82 ~~ea~lnlar~~e-----------~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 82 LLEAYLNLARSNE-----------KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred HHHHHHHHHHHHH-----------HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2334444443332 2334567777766655543222 24677799999999999999999999998
Q ss_pred cCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHhhhcccccccccchhhhhH
Q 012143 195 VDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ----NHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264 (470)
Q Consensus 195 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 264 (470)
...++ ..++..+|..+.+..++++|.-+..++.++-. ++....+.-...|. ++..
T Consensus 151 ~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh---------------maVa 215 (518)
T KOG1941|consen 151 YAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH---------------MAVA 215 (518)
T ss_pred HhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH---------------HHHH
Confidence 74433 24788999999999999999999999887632 33333333333333 4667
Q ss_pred HHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 265 LDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 265 ~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
+...|+..+|.++.+++.++. +........+|.+|...|+.+.|..-|+.+....
T Consensus 216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 778999999999999988763 2245667889999999999999999999988654
No 168
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=9.7e-07 Score=82.92 Aligned_cols=209 Identities=11% Similarity=0.073 Sum_probs=125.4
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHH--------HHH---hCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVH--------VAR---KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~--------~l~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
+...|-+++.+ ..+..+++-|.-++-. ++. .+|+ +.-...+.+..+.|-.++|...|++.-+.+--
T Consensus 756 S~~vW~nmA~M-cVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~DLl 832 (1416)
T KOG3617|consen 756 SDSVWDNMASM-CVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYDLL 832 (1416)
T ss_pred hhHHHHHHHHH-hhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44467777776 6666666666554422 111 1232 22334555666777777777777776554210
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHH
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 187 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 187 (470)
+ .+ |...|.+++|.++.+.--++.- -..|++.+.-+...++.+.|++
T Consensus 833 N-----------------Kl--------------yQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 833 N-----------------KL--------------YQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred H-----------------HH--------------HHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHH
Confidence 0 00 3455666777766554333322 2456777777777777888888
Q ss_pred HHHHHh----------hcCC----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012143 188 VLSSLL----------AVDP----------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247 (470)
Q Consensus 188 ~~~~a~----------~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 247 (470)
+|+++- .-+| .++..|...|......|+.+.|+.+|..+-. |+.+..+.
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~--- 948 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIK--- 948 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeE---
Confidence 877641 1122 2344566666667777777777777766532 22222222
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
+-+|+.++|-.+.+ ...+..+.+.+|+.|...|+..+|+..|.++-.
T Consensus 949 ------------------C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 949 ------------------CIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ------------------eeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 24677777765544 345677889999999999999999998887643
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.00 E-value=2.3e-08 Score=84.95 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=91.8
Q ss_pred chHHHHHHHHHH-HHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHH
Q 012143 165 QAVVWNTLGLIL-LKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAAL 237 (470)
Q Consensus 165 ~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 237 (470)
+....+..|..+ ...|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++...|++ +.++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346677777766 66799999999999999999998 5799999999999999999999999999988875 5566
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 292 (470)
+.+|.++. ..|++++|+..|+++++..|+...+.
T Consensus 221 ~klg~~~~---------------------~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 221 FKVGVIMQ---------------------DKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 66666665 79999999999999999999876543
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.99 E-value=2.8e-08 Score=88.85 Aligned_cols=124 Identities=22% Similarity=0.276 Sum_probs=109.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
.+-..+...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl----- 245 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL----- 245 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----
Confidence 3455666779999999999999888765 66779999999999999999999999999999888877777776
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
..++++.|+.+.++++...|++...|..|+.+|...|+++.|+..+..+--.
T Consensus 246 ----------------~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 ----------------SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred ----------------hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 7999999999999999999999999999999999999999999888755433
No 171
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.98 E-value=1.4e-07 Score=93.21 Aligned_cols=221 Identities=10% Similarity=0.104 Sum_probs=180.3
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHh-CCCCh----hHHHHHHHHHHHhCChh
Q 012143 18 LGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARK-MPKNA----HAHFLLGLMYQRLGQPL 92 (470)
Q Consensus 18 ~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~----~~~~~l~~~~~~~g~~~ 92 (470)
+++..+.. +.+++.+.-+|++.-.|...-.- ....++++.|++..+++|.. ++.-. ..|..+-+....-|.-+
T Consensus 1437 l~~~pesa-eDferlvrssPNSSi~WI~YMaf-~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1437 LSRAPESA-EDFERLVRSSPNSSILWIRYMAF-HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEE 1514 (1710)
T ss_pred cccCCcCH-HHHHHHHhcCCCcchHHHHHHHH-HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHH
Confidence 33333344 68999999999999999987777 88999999999999999864 44432 35555555555557667
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHH
Q 012143 93 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 172 (470)
Q Consensus 93 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 172 (470)
.-.+.|++|.+.+.. ..+|..++-+| ...+.+++|.++++.+++........|..+
T Consensus 1515 sl~kVFeRAcqycd~-------------~~V~~~L~~iy-----------~k~ek~~~A~ell~~m~KKF~q~~~vW~~y 1570 (1710)
T KOG1070|consen 1515 SLKKVFERACQYCDA-------------YTVHLKLLGIY-----------EKSEKNDEADELLRLMLKKFGQTRKVWIMY 1570 (1710)
T ss_pred HHHHHHHHHHHhcch-------------HHHHHHHHHHH-----------HHhhcchhHHHHHHHHHHHhcchhhHHHHH
Confidence 777888888775311 12344444443 455667999999999999988889999999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
|..++++++-+.|...+.+|++.-|. +.......|.+-++.|+.+.+...|+..+..+|...+.|..+...-.
T Consensus 1571 ~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei----- 1645 (1710)
T KOG1070|consen 1571 ADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI----- 1645 (1710)
T ss_pred HHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH-----
Confidence 99999999999999999999999998 77888999999999999999999999999999999999998887766
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
+.|+.+.+...|++++.+.
T Consensus 1646 ----------------k~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1646 ----------------KHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred ----------------ccCCHHHHHHHHHHHHhcC
Confidence 7899999999999999864
No 172
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.97 E-value=3.3e-07 Score=74.96 Aligned_cols=177 Identities=17% Similarity=0.173 Sum_probs=135.0
Q ss_pred cCcccHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH---HHHHHHHHHHHc---
Q 012143 143 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD---CIGNLGIAYFQS--- 213 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~--- 213 (470)
++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++.+.+.|.++. +++..|.+++..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 57899999999999999988765 468889999999999999999999999999988754 677888887643
Q ss_pred -----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-
Q 012143 214 -----GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK- 287 (470)
Q Consensus 214 -----g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~- 287 (470)
.-..+|+..|+..+...|+..-+-.....+-... ..-++.-..+|..|.+.|.+..|+.-++.+++..|+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~----d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLN----DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH----HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 2356788889999999998754322222111100 001233455789999999999999999999999877
Q ss_pred --CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 288 --AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 288 --~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
..+++..+..+|..+|-.++|...-+-.-...|++.
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 356788888999999999999776544444445543
No 173
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.97 E-value=5.7e-10 Score=93.43 Aligned_cols=107 Identities=21% Similarity=0.177 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhh
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 248 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 248 (470)
+-..|.-|+.+|.|++|+.||.+++..+|.++..+.+.+..|+++..+..|......++.++.....++...+....
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~--- 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE--- 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---
Confidence 44567777777777777777777777777777777777777777777777777777777766666666655555544
Q ss_pred cccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 249 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
.+|...+|.+-++.++++.|++.+....++
T Consensus 177 ------------------~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 177 ------------------SLGNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred ------------------HHhhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 466677777777777777776554444433
No 174
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.95 E-value=6.9e-07 Score=77.12 Aligned_cols=183 Identities=22% Similarity=0.287 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCCC--cchhhhcccchhhhhcChhhHHHHHHHHHH--hCCCChhHHHHHHHHHHHhCChhHHHHHHHHHH
Q 012143 27 SKMDSALEFGVDA--DGDQSGLGTSSSSREEKVSSLKTGLVHVAR--KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAE 102 (470)
Q Consensus 27 ~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 102 (470)
..+...+...+.. .......+.. ....+.+..+...+...+. ..+.....+...|..+...+++..++..+..++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
T COG0457 44 ELLEEALELLPNSDLAGLLLLLALA-LLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122 (291)
T ss_pred HHHHHHHhcCccccchHHHHHHHHH-HHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444432 3444445555 5556666666666666554 455555666666666666666666666666655
Q ss_pred HHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc---cchHHHHHHHHHHHHc
Q 012143 103 EILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT---RQAVVWNTLGLILLKS 179 (470)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~ 179 (470)
...+.+... ..+...+ + +...|+++.|...+.+++...| .........+..+...
T Consensus 123 ~~~~~~~~~----------~~~~~~~-~-----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (291)
T COG0457 123 ALDPDPDLA----------EALLALG-A-----------LYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180 (291)
T ss_pred cCCCCcchH----------HHHHHHH-H-----------HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh
Confidence 543222000 0000000 0 2233444555555555444333 2233333334444444
Q ss_pred CChHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 180 GRLQSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
++++.|+..+.+++...+. ....+..++..+...+++++|+..+..++...|.
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 4555555555555544444 3444444444444444445555555544444444
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.94 E-value=2.4e-09 Score=71.20 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=34.8
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 207 (470)
.|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++..+..++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 455555555555555555555555555555555555555555555555555555554444443
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.93 E-value=4e-09 Score=70.15 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=60.7
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
++..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999998777665553
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.91 E-value=9.6e-09 Score=69.39 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=56.2
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
..+|...+++++|++++++++.++|+++..+..+|.++..+|++++|+..++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888877665443
No 178
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=4.3e-06 Score=78.75 Aligned_cols=313 Identities=14% Similarity=0.090 Sum_probs=181.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChh
Q 012143 13 KKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPL 92 (470)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 92 (470)
..+..+++.+.+- .+.++.+. |++.+ ...+.. ....|-+++|...|++.-. +-.+-..|...|.++
T Consensus 778 VClGhm~~aRgaR--AlR~a~q~-~~e~e--akvAvL-AieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~ 843 (1416)
T KOG3617|consen 778 VCLGHMKNARGAR--ALRRAQQN-GEEDE--AKVAVL-AIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWS 843 (1416)
T ss_pred HhhhhhhhhhhHH--HHHHHHhC-Ccchh--hHHHHH-HHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHH
Confidence 3456677777664 66666554 33332 223334 6667778899988887543 334566777788888
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh----------hhcC
Q 012143 93 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES----------MQSD 162 (470)
Q Consensus 93 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----------~~~~ 162 (470)
+|.+.-+.-=+ ..+-..|++.+.-+ -..++.+.|+++|+++ +..+
T Consensus 844 eA~eiAE~~DR--------------iHLr~Tyy~yA~~L-----------ear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 844 EAFEIAETKDR--------------IHLRNTYYNYAKYL-----------EARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred HHHHHHhhccc--------------eehhhhHHHHHHHH-----------HhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 87776543211 11122233333322 2345567888888765 3334
Q ss_pred cc----------chHHHHHHHHHHHHcCChHHHHHHHHHHhhc---------------------CCCChHHHHHHHHHHH
Q 012143 163 TR----------QAVVWNTLGLILLKSGRLQSSISVLSSLLAV---------------------DPNNCDCIGNLGIAYF 211 (470)
Q Consensus 163 p~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------------------~~~~~~~~~~la~~~~ 211 (470)
|. ++..|...|..+...|+.+.|+.+|..+-.. ...+..+.+.+|+.|.
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 42 3567778899999999999999999987442 2345668899999999
Q ss_pred HcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHhhhcccccccccchhhhh--------------HHHhcCCH
Q 012143 212 QSGDMEQSAKCFQDLILK------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGA--------------CLDQASAV 271 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 271 (470)
..|++.+|+..|.++-.. ...+. ..-.+..+..... .......+. +|.+.|.+
T Consensus 979 n~g~v~~Av~FfTrAqafsnAIRlcKEnd-~~d~L~nlal~s~------~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQAFSNAIRLCKEND-MKDRLANLALMSG------GSDLVSAARYYEELGGYAHKAVMLYHKAGMI 1051 (1416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHhhcC------chhHHHHHHHHHHcchhhhHHHHHHHhhcch
Confidence 999999999999887543 22111 0111222211111 111122233 34444555
Q ss_pred HHHHHHHHH-----H---H--hcCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH------hcCCCcccHHHHHHHHHH
Q 012143 272 NVAKECLLA-----A---L--KADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAA------KLEPNCMSTRYAVAVSRI 334 (470)
Q Consensus 272 ~~A~~~~~~-----~---~--~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~------~~~p~~~~~~~~l~~~~~ 334 (470)
.+|++..-+ + | .++|+ ++......+..+....+|++|...+-.+- ++..+...
T Consensus 1052 ~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv---------- 1121 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV---------- 1121 (1416)
T ss_pred HHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------
Confidence 544443221 1 1 22443 67888888888889999999887765443 32221100
Q ss_pred HHhhhccCchHHhhhhHHHHHHHhhcCCCCCC---CcHHHHHHHHHHHhccccHHHHHHHHHHH
Q 012143 335 KDAERSQEPTEQLSWAGNEMASILREGDPVQI---EPPIAWAGFAAVQKTHHEVAAAFETEENE 395 (470)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 395 (470)
..-+++...+.......| ....++..+|.+..++|.|..|-+-|.++
T Consensus 1122 --------------~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1122 --------------RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred --------------chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 001122222222221122 23457788999999999999888887763
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.89 E-value=6e-08 Score=80.06 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=89.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCC
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGD 215 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~ 215 (470)
++..|+|..|...|...++..|+. +.+++.||.+++.+|++++|...|..+++-.|++ +++++.+|.+...+|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 357788999999999999999976 6799999999999999999999999999987765 6899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHH
Q 012143 216 MEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 216 ~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
.++|...|+++++..|+...+...
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999877554
No 180
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2.9e-06 Score=69.28 Aligned_cols=243 Identities=14% Similarity=0.043 Sum_probs=164.7
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
=.|+|..++..-.+..... ..+.....+...|..+|++..-+......- .....+...++.....-++.+.-+...
T Consensus 20 Y~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 3466777777766655443 666777778888888888776665444332 122345566666666666666666555
Q ss_pred HHHHhhCCCChH-HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 224 QDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 224 ~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
.+.+........ .+..++ |.++...|++++|++..... .+.++...--.++.++
T Consensus 96 ~E~~a~~~~~sn~i~~l~a--------------------a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~ 150 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLA--------------------AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKM 150 (299)
T ss_pred HHHHHhhccchhHHHHHHh--------------------hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHH
Confidence 554433222222 222222 34445899999999887763 2456666667788889
Q ss_pred CChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcc
Q 012143 303 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 382 (470)
Q Consensus 303 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (470)
.+.+-|...++++.+++.+... ..+ +.+|..++ ...
T Consensus 151 ~r~d~A~~~lk~mq~ided~tL--tQL---------------------------------------A~awv~la---~gg 186 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDEDATL--TQL---------------------------------------AQAWVKLA---TGG 186 (299)
T ss_pred HHHHHHHHHHHHHHccchHHHH--HHH---------------------------------------HHHHHHHh---ccc
Confidence 9999999999999888766321 111 12333332 233
Q ss_pred ccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 012143 383 HEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 459 (470)
Q Consensus 383 ~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 459 (470)
+++..|.-.|+..-+ +.......+.+.|...+++|++|...++.++..++++++++.++-.+-...|...++..-+-
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 457788888887655 34445677999999999999999999999999999999999999999999998876655443
No 181
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.88 E-value=8.8e-05 Score=71.01 Aligned_cols=228 Identities=13% Similarity=0.009 Sum_probs=150.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
....+++..|.....+.++.+|+..-+...-|..+.++|+.++|..+++..-...+++ ...+.. +-.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D------~~tLq~------l~~~ 86 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD------DLTLQF------LQNV 86 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc------hHHHHH------HHHH
Confidence 3456788899999999999999999999999999999999999997666543332221 111111 1111
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
|.+.+++++|..+|++++..+|. .+.++.+-.+|.+.+.|.+-.+.--+..+..|+.+-.+.....+.
T Consensus 87 -----------y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 87 -----------YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred -----------HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 34566778999999999998988 777778888888888877665555555556777665433333333
Q ss_pred H-HcCCH---------HHHHHHHHHHHhhC-CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 211 F-QSGDM---------EQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 211 ~-~~g~~---------~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
+ ..... .-|...+++.++.. +-...+ -+.++. .++...|++++|.+++.
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a---E~~Lyl-----------------~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA---EIILYL-----------------LILELQGKYQEALEFLA 214 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCccchHH---HHHHHH-----------------HHHHhcccHHHHHHHHH
Confidence 3 22222 23444555555544 111111 111111 34457899999999994
Q ss_pred H-HHhcCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 280 A-ALKADP-KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 280 ~-~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
. ..+..+ .+...-......+...++|.+-.+...+.+...+++
T Consensus 215 ~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 215 ITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 3 333333 344455566778888999999999999999999887
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.88 E-value=9.6e-08 Score=70.06 Aligned_cols=97 Identities=23% Similarity=0.159 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
+.+++.+|.++-..|+.++|+..|++++...... ..++..++..+. ..|++++|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---------------------~LG~~deA~~ 59 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR---------------------NLGRYDEALA 59 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH---------------------HcCCHHHHHH
Confidence 3578999999999999999999999999976554 345555555555 7999999999
Q ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 277 CLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 277 ~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
.+++++...|+ +..+...++.++...|++++|+..+-.++.
T Consensus 60 ~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 60 LLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999898 888889999999999999999999988775
No 183
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=2.2e-08 Score=77.46 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=91.7
Q ss_pred ccCcccHHHHHHHHHHhhhcCccch-----HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQA-----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 216 (470)
++..|+|++|...|..++...|..+ ..|.+.|.+++.++.++.|+..+.++|+++|....++...|.+|.++..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 6789999999999999999998753 36778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
++|++.|+++++.+|....+......
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 99999999999999998766554443
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.84 E-value=1e-07 Score=85.34 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=106.0
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
..++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+...
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 446789999999999988865 56678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 224 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 224 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
++++...|++...|..|+.+|. ..|+++.|+-.++.+-
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi---------------------~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYI---------------------QLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHH---------------------hcCCHHHHHHHHhcCc
Confidence 9999999999999999999998 7999999998777543
No 185
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.84 E-value=8e-06 Score=77.78 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=151.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..+++.+|++.+.+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+|+.++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 56788888888888888888888888888888888888888888877777766777777788888888888888888888
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY- 300 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~- 300 (470)
+|++++..+|+ ......+-.++. +.+.|.+-.+.--+..+..|.++........+..
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayv---------------------R~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYV---------------------REKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 88888888887 555555544444 4555655555555555567776555444433322
Q ss_pred HcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHh
Q 012143 301 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 380 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (470)
.....+.... .....++... ....+.... ......-....-.+..
T Consensus 157 s~~~~~~~~~-------------~i~l~LA~~m--------------------~~~~l~~~g--k~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 157 SIFSENELLD-------------PILLALAEKM--------------------VQKLLEKKG--KIESEAEIILYLLILE 201 (932)
T ss_pred hccCCccccc-------------chhHHHHHHH--------------------HHHHhccCC--ccchHHHHHHHHHHHH
Confidence 2222222211 1111111111 111222210 1111111222334566
Q ss_pred ccccHHHHHHHHHHHhc----chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 381 THHEVAAAFETEENELS----KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 381 ~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
.++++++|.+.+...+. +.+..........+...+++.+-.+...+.+...+++
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 78889999998855332 2222233345567788899999999999999999987
No 186
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=8.3e-07 Score=72.36 Aligned_cols=169 Identities=17% Similarity=0.145 Sum_probs=128.8
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHH
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 121 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 121 (470)
.+..++...+...|++++|.+.... -.+.++...--.++.+..+++-|...++++.+++.+ .....++
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------~tLtQLA 176 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED-------ATLTQLA 176 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------HHHHHHH
Confidence 4554444438888889988888775 345667777778888888888888888888877422 3334456
Q ss_pred HHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH
Q 012143 122 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
.+|..++. ..+.+.+|.-+|+..-...|..+..+...+.+++.+|+|++|...++.++..++++++
T Consensus 177 ~awv~la~--------------ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 177 QAWVKLAT--------------GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred HHHHHHhc--------------cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 66655543 3345788999999998888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCChHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAK-CFQDLILKDQNHPAA 236 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~ 236 (470)
++.++..+-...|...++.+ .+.+....+|.++..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999988988877664 445555667776643
No 187
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.81 E-value=6.6e-05 Score=64.97 Aligned_cols=294 Identities=19% Similarity=0.130 Sum_probs=187.8
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
-|.+-.-.|+-..|...-.++-++...+ .+..+ ......+ .+-.|+++.|.+-|+.++.
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssD-----qepLI---hlLeAQa-------------al~eG~~~~Ar~kfeAMl~ 148 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSD-----QEPLI---HLLEAQA-------------ALLEGDYEDARKKFEAMLD 148 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhcc-----chHHH---HHHHHHH-------------HHhcCchHHHHHHHHHHhc
Confidence 3555556677788888777776543222 11122 2222222 2356889999999998885
Q ss_pred cCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHH
Q 012143 161 SDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALI 238 (470)
Q Consensus 161 ~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~ 238 (470)
+|.. .-.+..|-.--.+.|..+.|+.+-+.+-...|.-+.++...-...+..|+|+.|++..+......--.. .+-.
T Consensus 149 -dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR 227 (531)
T COG3898 149 -DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAER 227 (531)
T ss_pred -ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH
Confidence 3332 222233333345789999999999999999999999999888889999999999999987664321111 1112
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
..+.++..+ +. -.-..+...|...-.++.++.|+....-..-+..+++.|+..++-..++.+.+.
T Consensus 228 ~rAvLLtAk--------------A~-s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 228 SRAVLLTAK--------------AM-SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHHHHHH--------------HH-HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 222222211 00 012456889999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHH-----
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE----- 393 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----- 393 (470)
.|.-..+... ++.+.|+.. +..++
T Consensus 293 ePHP~ia~lY-------------------------------------------------~~ar~gdta--~dRlkRa~~L 321 (531)
T COG3898 293 EPHPDIALLY-------------------------------------------------VRARSGDTA--LDRLKRAKKL 321 (531)
T ss_pred CCChHHHHHH-------------------------------------------------HHhcCCCcH--HHHHHHHHHH
Confidence 8873221110 011111111 11111
Q ss_pred HHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 012143 394 NELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKVLM 463 (470)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 463 (470)
..+.+++.+..+..+..-...|++..|..--+.+....|. ..++..|+.+-... ||..++..++-+++.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1344555555555556666666677777666666666664 34556666666444 777777777766654
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.79 E-value=3.8e-08 Score=66.45 Aligned_cols=67 Identities=25% Similarity=0.303 Sum_probs=61.4
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHH
Q 012143 262 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 328 (470)
Q Consensus 262 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (470)
..++.+.+++++|++++++++..+|+++..+..+|.++..+|++++|+..++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3456689999999999999999999999999999999999999999999999999999988765543
No 189
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=2.9e-08 Score=76.81 Aligned_cols=101 Identities=20% Similarity=0.096 Sum_probs=92.0
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcc-----hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHH
Q 012143 6 DVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADG-----DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFL 80 (470)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 80 (470)
+....||+.+++.|.+.+|. ..|..+|+..|.... .|.+.|.+ ..+.+.++.|+....++++++|.+..++..
T Consensus 96 d~lK~EGN~~F~ngdyeeA~-skY~~Ale~cp~~~~e~rsIly~Nraaa-~iKl~k~e~aI~dcsKaiel~pty~kAl~R 173 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEAN-SKYQEALESCPSTSTEERSILYSNRAAA-LIKLRKWESAIEDCSKAIELNPTYEKALER 173 (271)
T ss_pred HHHHHHHHHhhhcccHHHHH-HHHHHHHHhCccccHHHHHHHHhhhHHH-HHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence 44556899999999999999 999999999987544 56678888 999999999999999999999999999999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEILLRC 108 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~~~~ 108 (470)
+|.+|.+..++++|+..|+++++.+|..
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 9999999999999999999999998764
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.78 E-value=2e-06 Score=66.13 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhh-cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA-VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
.+.......+.+..-|.. .-.+.+|......|++.+|...|++++. +.-+++..+..+++..+..+++..|...+++.
T Consensus 72 P~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 72 PERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 344555555556666653 4567899999999999999999999986 45678889999999999999999999999999
Q ss_pred HhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 227 ILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 227 l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
.+.+|. .++....++.++. ..|++.+|...|+.++...|+ +......+..+..+|+
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~la---------------------a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLA---------------------AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred hhcCCccCCCCchHHHHHHHH---------------------hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 998875 3455556666665 799999999999999999997 7788888999999999
Q ss_pred hhHHHHHHHHHHh
Q 012143 305 HRSSGKCLEKAAK 317 (470)
Q Consensus 305 ~~~A~~~~~~a~~ 317 (470)
.++|..-+..+.+
T Consensus 209 ~~ea~aq~~~v~d 221 (251)
T COG4700 209 LREANAQYVAVVD 221 (251)
T ss_pred hhHHHHHHHHHHH
Confidence 8888776655543
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.77 E-value=6.7e-06 Score=67.49 Aligned_cols=177 Identities=16% Similarity=0.121 Sum_probs=119.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH---HHHHHHHHH
Q 012143 263 ACLDQASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY---AVAVSRIKD 336 (470)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~---~l~~~~~~~ 336 (470)
....+.|++++|+..|+.+....|. ...+...++.++++.+++++|+...++.+.+.|.++++-+ ..++..+..
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 3334799999999999999999887 4568889999999999999999999999999999987654 344443333
Q ss_pred hhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhcc
Q 012143 337 AERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASA 416 (470)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 416 (470)
.............++..+...+..-.... -.+.+-..+..+ ...-..--..+|..|.+.|.
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-Ya~dA~~~i~~~------------------~d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSR-YAPDAKARIVKL------------------NDALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHH------------------HHHHHHHHHHHHHHHHHhcC
Confidence 33333333333444444444444432211 001111110000 00011112356778999999
Q ss_pred HHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHH
Q 012143 417 VNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 417 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 458 (470)
+-.|+.-++.+++..|+. .+++..+..+|..+|-.++|.+.-
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999999987765 578888999999999999987763
No 192
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.73 E-value=4.5e-07 Score=67.53 Aligned_cols=93 Identities=16% Similarity=0.246 Sum_probs=69.4
Q ss_pred CcccHHHHHHHHHHhhhcCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHcCC--
Q 012143 144 EPEELEEILSKLKESMQSDTR---QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGD-- 215 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~-- 215 (470)
+.|+|.+|++.|+.+....|. ...+.+.+|.+|+..+++++|+..+++.++++|.++ .+++..|.+++.+..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~ 101 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS 101 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence 344444444444444444443 356778888889999999999999999998888764 478888888888766
Q ss_pred -------------HHHHHHHHHHHHhhCCCChHH
Q 012143 216 -------------MEQSAKCFQDLILKDQNHPAA 236 (470)
Q Consensus 216 -------------~~~A~~~~~~~l~~~p~~~~~ 236 (470)
..+|...|++++...|++..+
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 889999999999999988754
No 193
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.72 E-value=3.1e-08 Score=67.81 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=55.1
Q ss_pred hhhHhhHHHHHHHhccHHHHHHHHHHHHhc----C---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 401 ECAGAGESAFLDQASAVNVAKECLLAALKA----D---PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
..++..+|.+|...|++++|+.+|++++++ . |....++.++|.++..+|++++|+++|+++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 356778888999999999999999999865 1 22366889999999999999999999999999874
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.71 E-value=5.1e-07 Score=67.25 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=91.1
Q ss_pred CcHHHHHHHHHHHhccccHHHHHHHHHHHhc-----chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc---HHHH
Q 012143 367 EPPIAWAGFAAVQKTHHEVAAAFETEENELS-----KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIW 438 (470)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 438 (470)
..+..++.-|......|+|.+|++.++.... +....+.+.+|.+|...+++++|+..+++-++++|.+ +.++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4567889999999999999999999998655 3334778899999999999999999999999999988 4689
Q ss_pred HHHHHHHHHcCC---------------hHHHHHHHHHHHHhhccCC
Q 012143 439 ANLANAYYLTGD---------------HRSSGKCLEKVLMVYCSSN 469 (470)
Q Consensus 439 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~~ 469 (470)
+..|.++..+.. ..+|...|++.+..+|+|.
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 999999999887 8999999999999999874
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.71 E-value=7.5e-07 Score=73.69 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHH
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAA 242 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~ 242 (470)
.+..|.-++..|+|..|...|...++..|++ +.+++.||.+++.+|+++.|...|..+.+-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999876 6799999999999999999999999999988766 456777776
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
+.. ..|+.++|...|+++++..|+...+...
T Consensus 224 ~~~---------------------~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLG---------------------RLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHH---------------------HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 666 7999999999999999999997766543
No 196
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.71 E-value=8.1e-08 Score=85.32 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=66.6
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC---IGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
.+|+++.+++++|.+|...|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999855 9999999999999999999999999973
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.70 E-value=3.1e-05 Score=66.93 Aligned_cols=258 Identities=14% Similarity=0.082 Sum_probs=185.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccch-hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhH
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSS-SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLK 93 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 93 (470)
-.-.|+++.+- ..|+..+. +|..- ..-..|..+ ....|+.+.|+.+-+.+-...|.-+.++...-...+..|+++.
T Consensus 130 al~eG~~~~Ar-~kfeAMl~-dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 130 ALLEGDYEDAR-KKFEAMLD-DPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HHhcCchHHHH-HHHHHHhc-ChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHH
Confidence 33457777776 66665543 34322 122233221 4568999999999999999999999999888888899999999
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 173 (470)
|+++.+.......-. ++.......-..-+.+. ..-..+...|.....+++++.|+...+-..-+
T Consensus 207 AlkLvd~~~~~~vie------~~~aeR~rAvLLtAkA~----------s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 207 ALKLVDAQRAAKVIE------KDVAERSRAVLLTAKAM----------SLLDADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHHHHHHhhc------hhhHHHHHHHHHHHHHH----------HHhcCChHHHHHHHHHHhhcCCccchHHHHHH
Confidence 999999877643211 11111111111111111 11234568899999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH---HHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD---LILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
..+++.|+..++-..++.+.+..|. ++ ++.+|....--+.++.-+++ ...+.|++.+.....+..-+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAl----- 340 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAAL----- 340 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH-----
Confidence 9999999999999999999999886 33 23344433333344444444 44668999998888877766
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHhc
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKAAKL 318 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 318 (470)
..|++..|..--+.+....|. ..++..++.+-... |+-.+...++-++++.
T Consensus 341 ----------------da~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 341 ----------------DAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ----------------hccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 589999999999999999997 67788888887766 9999999999999874
No 198
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=2e-05 Score=70.05 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=107.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
+....+...+..-.+.+.....+.+.+++..+..++..|++.+|.+.+...--. ............ .|+.
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~---~~~g~~~T~q~~-------~cif 285 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH---KEAGGTITPQLS-------SCIF 285 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccc---cccCccccchhh-------hhee
Confidence 344555666666666666677788899999999999999999999887653211 000000111112 2333
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhc---------Cc---------cchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQS---------DT---------RQAVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~p---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
...+|-+ +++.|.+.-+..+|.++++. .| ...+++++.|..|...|++-.|.++|.++
T Consensus 286 ~NNlGcI----h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 286 NNNLGCI----HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred ecCcceE----eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 3444444 66777779999999998851 11 23568999999999999999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHH
Q 012143 193 LAVDPNNCDCIGNLGIAYFQ 212 (470)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~ 212 (470)
....-.+|..|..++.+...
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999998864
No 199
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.67 E-value=3.9e-08 Score=67.33 Aligned_cols=67 Identities=21% Similarity=0.425 Sum_probs=58.0
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DP---NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
|+-..++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556788999999999999999999999999976 22 23568999999999999999999999999875
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.65 E-value=1.1e-07 Score=84.50 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=57.1
Q ss_pred cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 397 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI---WANLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
+|.....++++|.+|...|+|++|+..|+++++++|+++.+ |+++|.+|..+|+.++|+.+|++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555677788888888888888899999999999988754 889999999999999999999998886
No 201
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.63 E-value=3.1e-07 Score=70.57 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC----------ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC--
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSG----------RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-- 215 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-- 215 (470)
|+.|.+.++.....+|.+++.+++.|.++..+. .+++|+.-|++++.++|+..+++..+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999999887763 35678888899999999999999999999987653
Q ss_pred ---------HHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 216 ---------MEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 216 ---------~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
|++|..+|+++...+|++...+..|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 78899999999999999876554443
No 202
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.58 E-value=9.3e-07 Score=68.01 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCC
Q 012143 57 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 136 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (470)
|+.|.+.++.....+|.+++.++.-|.++..+.++...-+.. ++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~----~m-------------------------------- 50 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESK----KM-------------------------------- 50 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHH----HH--------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHH----HH--------------------------------
Confidence 567888888888899999999999999998876653321111 11
Q ss_pred CccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC-----------hHHHHHHHHHHhhcCCCChHHHHH
Q 012143 137 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR-----------LQSSISVLSSLLAVDPNNCDCIGN 205 (470)
Q Consensus 137 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~a~~~~~~~~~~~~~ 205 (470)
+++|+.-|++++.++|+..+++..+|.+|..++. |++|..+|+++...+|++......
T Consensus 51 -----------iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 51 -----------IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp -----------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred -----------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3778888999999999999999999999987754 788999999999999998765444
Q ss_pred HH
Q 012143 206 LG 207 (470)
Q Consensus 206 la 207 (470)
|.
T Consensus 120 Le 121 (186)
T PF06552_consen 120 LE 121 (186)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 203
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.2e-05 Score=62.00 Aligned_cols=149 Identities=11% Similarity=0.092 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCChH-HH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD------CIGNLGIAYFQS-GDMEQSAKCFQDLILKDQNHPA-AL 237 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~-~~ 237 (470)
...|...+.+| +.+++.+|+.++++++++..+... -+..+|.+|..- .++++|+.+|+++-+....... +.
T Consensus 74 at~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 34555555555 455999999999999998665433 455889998765 8999999999999876543322 11
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCChhHHHH
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-------HIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~ 310 (470)
-+...+- .+..-...++|.+|+..|++.....-++. ..++.-|.|++...+.-.+..
T Consensus 153 ANKC~lK----------------vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ 216 (288)
T KOG1586|consen 153 ANKCLLK----------------VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQR 216 (288)
T ss_pred HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHH
Confidence 1221111 23444578999999999999887655543 234556778888899999999
Q ss_pred HHHHHHhcCCCcccHHHHHHH
Q 012143 311 CLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 311 ~~~~a~~~~p~~~~~~~~l~~ 331 (470)
.+++...++|.....+-..-+
T Consensus 217 ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 217 ALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHhcCCcccccHHHHHH
Confidence 999999999998877654433
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.55 E-value=2.8e-05 Score=60.02 Aligned_cols=128 Identities=15% Similarity=0.126 Sum_probs=105.9
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHhhhccc
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL-KDQNHPAALINYAALLLCKYGSV 251 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~~~~~ 251 (470)
+....+.=+++....-..+.+...|.. .-.+.||......|++.+|...|++++. +...++..+..++...+
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf------ 135 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF------ 135 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH------
Confidence 344445556666666677777777764 4568899999999999999999999985 45567777777777766
Q ss_pred ccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
..+++..|...+++..+.+|. .++....+|.++..+|++.+|...|+.++...|+.
T Consensus 136 ---------------a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 136 ---------------AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred ---------------hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 699999999999999999886 68888999999999999999999999999998883
No 205
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.52 E-value=0.00073 Score=61.32 Aligned_cols=394 Identities=10% Similarity=0.034 Sum_probs=218.8
Q ss_pred HHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhh
Q 012143 30 DSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCE 109 (470)
Q Consensus 30 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 109 (470)
++-++.+|.+..+|+.+-.- +..+ .+++....+++.+...|..+.+|.......+...+|+.-..+|.+++...-+
T Consensus 10 ~~rie~nP~di~sw~~lire-~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-- 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIRE-AQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-- 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHH-HccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--
Confidence 56678999999999998777 5555 9999999999999999999999999999999999999999999999875211
Q ss_pred cccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHH---------HcC
Q 012143 110 ADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILL---------KSG 180 (470)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---------~~~ 180 (470)
-+.+. ++... +...-+.. .-......+|-+....-+..++....+|...+..+. .+.
T Consensus 86 -----lDLW~---lYl~Y--VR~~~~~~----~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q 151 (656)
T KOG1914|consen 86 -----LDLWK---LYLSY--VRETKGKL----FGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ 151 (656)
T ss_pred -----HhHHH---HHHHH--HHHHccCc----chHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH
Confidence 22221 11110 00001110 000011122222222223355666666666555432 334
Q ss_pred ChHHHHHHHHHHhhcCCCChH-HHH-------------HHHHHHHHcCCHHHHHHHHHHHHhh-------CCC----ChH
Q 012143 181 RLQSSISVLSSLLAVDPNNCD-CIG-------------NLGIAYFQSGDMEQSAKCFQDLILK-------DQN----HPA 235 (470)
Q Consensus 181 ~~~~A~~~~~~a~~~~~~~~~-~~~-------------~la~~~~~~g~~~~A~~~~~~~l~~-------~p~----~~~ 235 (470)
+.+.-...|++++...-.+.+ .|. ..=.+-.....|..|...+++...+ +|. ...
T Consensus 152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 566677788888764333321 111 1112223445667777777665432 111 111
Q ss_pred -------HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 012143 236 -------ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV--NVAKECLLAALKADPKAAHIWANLANAYYLTGD-- 304 (470)
Q Consensus 236 -------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-- 304 (470)
.|.++...-. .+.. . ...|.. ..-.-.+++++..-+-.+++|+.-+..+...++
T Consensus 232 ~e~~qv~~W~n~I~wEk--sNpL-~------------t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~ 296 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEK--SNPL-R------------TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLL 296 (656)
T ss_pred HHHHHHHHHHHHHHHHh--cCCc-c------------cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Confidence 1221111110 0000 0 001111 123345667777667777777766665555555
Q ss_pred ------------hhHHHHHHHHHHhcCCCc-ccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHH
Q 012143 305 ------------HRSSGKCLEKAAKLEPNC-MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 371 (470)
Q Consensus 305 ------------~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (470)
.+++..+|++++...-.. ...++.++ ...+........+......+.+...... +...+
T Consensus 297 ~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a--~~eE~~~~~n~~~~~~~~~~~ll~~~~~------~~tLv 368 (656)
T KOG1914|consen 297 TEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA--DYEESRYDDNKEKKVHEIYNKLLKIEDI------DLTLV 368 (656)
T ss_pred HHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHhcccchhhhhHHHHHHHHhhhcc------CCcee
Confidence 567788888877643222 11222222 2222111111111111111112111111 12245
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhcchhh--hhHhhHHH-HHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 012143 372 WAGFAAVQKTHHEVAAAFETEENELSKMEE--CAGAGESA-FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 448 (470)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 448 (470)
|..+-..-.+..-...|...|.++-+.... .++..-|. -|.-.++..-|...|+--+...++.+..-......+...
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~l 448 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHL 448 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence 666666666666777777777775543322 22222222 234567888888888888888888888777777788888
Q ss_pred CChHHHHHHHHHHHHh
Q 012143 449 GDHRSSGKCLEKVLMV 464 (470)
Q Consensus 449 g~~~~A~~~~~~al~~ 464 (470)
|+-..|...|++++..
T Consensus 449 Ndd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 449 NDDNNARALFERVLTS 464 (656)
T ss_pred CcchhHHHHHHHHHhc
Confidence 8888888888888765
No 206
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.52 E-value=1.8e-06 Score=62.10 Aligned_cols=91 Identities=15% Similarity=0.238 Sum_probs=82.2
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~ 218 (470)
...|+++.|++.|.+++..-|..+.+|.+.+..+.-+|+.++|++.+++++++.... ..++...|.+|..+|+.+.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 366888999999999999999999999999999999999999999999999985543 3578999999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 012143 219 SAKCFQDLILKDQNH 233 (470)
Q Consensus 219 A~~~~~~~l~~~p~~ 233 (470)
|...|+.+-++....
T Consensus 134 AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 134 ARADFEAAAQLGSKF 148 (175)
T ss_pred HHHhHHHHHHhCCHH
Confidence 999999998876543
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=2.7e-05 Score=63.55 Aligned_cols=225 Identities=19% Similarity=0.175 Sum_probs=159.3
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhC-------------CCC-----h-hHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKM-------------PKN-----A-HAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------------p~~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
.+.|...-.+ +.+...+++|...+...-..+ |+. | ......|.+....|+..+.+.-+..
T Consensus 69 lq~wT~r~~~-l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 69 LQLWTVRLAL-LVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHH-HHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3345555555 666677777776666543333 221 1 1233456777778888888777766
Q ss_pred HHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccH-HHHHHHHHHhhhcCccchHHHHHHHHHHHHc
Q 012143 101 AEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL-EEILSKLKESMQSDTRQAVVWNTLGLILLKS 179 (470)
Q Consensus 101 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 179 (470)
....-.+ ... -.+.+.. +..+..+++-+ ..+.+.+..++...
T Consensus 148 L~~~V~~---------ii~----------------------~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~ 190 (366)
T KOG2796|consen 148 LKTVVSK---------ILA----------------------NLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGM 190 (366)
T ss_pred HHHHHHH---------HHH----------------------HHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 5543110 000 0011111 34445544433 34667788899999
Q ss_pred CChHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHhhhcccc
Q 012143 180 GRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ------NHPAALINYAALLLCKYGSVL 252 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~l~~~~~~~~~~~~ 252 (470)
|.|.-....+.+.++.+ |..+.....+|.+.++.|+.+.|..+|+++-+... .......+.+
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a----------- 259 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA----------- 259 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh-----------
Confidence 99999999999999988 67888999999999999999999999997654321 1122233333
Q ss_pred cccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 253 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.++.-.+++..|...|.+++..+|.++.+..+.|.|....|+..+|++.++.+++..|...
T Consensus 260 ----------~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 260 ----------FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred ----------hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3344689999999999999999999999999999999999999999999999999999854
No 208
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5e-07 Score=72.22 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=95.9
Q ss_pred CcccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHH
Q 012143 1 MSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFL 80 (470)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 80 (470)
|+.-.++..+.|+.++.-.++..++ +.|.++|.++|..+.-|.+.+.+ +++..+++.......++++++|+.+.+++.
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai-~~y~raI~~nP~~~~Y~tnralc-hlk~~~~~~v~~dcrralql~~N~vk~h~f 83 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAI-DCYSRAICINPTVASYYTNRALC-HLKLKHWEPVEEDCRRALQLDPNLVKAHYF 83 (284)
T ss_pred cchHHHHHHhccccccchhhhchHH-HHHHHHHhcCCCcchhhhhHHHH-HHHhhhhhhhhhhHHHHHhcChHHHHHHHH
Confidence 3445566777899999999999999 89999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHH
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~ 105 (470)
+|.+......|++|+..++++.++.
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 209
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.44 E-value=2e-07 Score=51.18 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 012143 423 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 456 (470)
Q Consensus 423 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 456 (470)
+|+++++++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999963
No 210
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.43 E-value=2.3e-05 Score=70.28 Aligned_cols=227 Identities=15% Similarity=0.063 Sum_probs=142.2
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
..+..+...-++.-.++++++|+.++++..|+.-.. .-..+|..+|+++++..... +...
T Consensus 178 AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~----------------lg~s-- 237 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEAS----------------LGKS-- 237 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHh----------------hchh--
Confidence 456677778888889999999999999999887543 35789999999999864221 0000
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccc--hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--ChHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--NCDCIGNL 206 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 206 (470)
...+....+-......+.+ ..+...+|.|..+.|+.++|++.++..++..|. +..++.+|
T Consensus 238 ----------------~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenL 301 (539)
T PF04184_consen 238 ----------------QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENL 301 (539)
T ss_pred ----------------hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHH
Confidence 0000000011111111111 345667999999999999999999999988775 45689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC---CHHHHHHHHHHHH
Q 012143 207 GIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVNVAKECLLAAL 282 (470)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~ 282 (470)
..++..++.|.++...+.+.-++ -|+.....+.-+.+..+...+.. .+ ....+.| --..|++.+.+++
T Consensus 302 ie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~f-s~-------e~a~rRGls~ae~~aveAi~RAv 373 (539)
T PF04184_consen 302 IEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKF-SP-------EAASRRGLSPAEMNAVEAIHRAV 373 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcccc-Cc-------hhhhhcCCChhHHHHHHHHHHHH
Confidence 99999999999999999886433 24444444444333322110000 00 0111222 1234788999999
Q ss_pred hcCCCCHHHHHHHHH------HHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 283 KADPKAAHIWANLAN------AYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 283 ~~~p~~~~~~~~la~------~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
+.+|..+..+..+=. -..+.|+ .||+.+---.++.-.+.
T Consensus 374 efNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~v 418 (539)
T PF04184_consen 374 EFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRV 418 (539)
T ss_pred HhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcC
Confidence 999987766554321 2344554 67777665555544333
No 211
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=4.7e-05 Score=61.09 Aligned_cols=133 Identities=12% Similarity=0.087 Sum_probs=92.8
Q ss_pred CcccHHHHHHHHHHhhhcCccc------hHHHHHHHHHHHHc-CChHHHHHHHHHHhhcCCCC------hHHHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPNN------CDCIGNLGIAY 210 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~ 210 (470)
+.++..+|+.++++++++..+. +.-+..+|.+|... .++++|+.+|+++-+..... ..++...+..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 4445566666666666654433 22345788888766 89999999999987753322 34677778888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHH-HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 012143 211 FQSGDMEQSAKCFQDLILKDQNHPAALINY-AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 289 (470)
..+++|.+|+..|+++....-+++-..+.. +..+. .|.|+.-..+.-.+...+++-.+++|...
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk---------------AgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK---------------AGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH---------------HHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 899999999999999987766655443332 22222 36666677888888888888889999854
Q ss_pred HH
Q 012143 290 HI 291 (470)
Q Consensus 290 ~~ 291 (470)
..
T Consensus 230 ds 231 (288)
T KOG1586|consen 230 DS 231 (288)
T ss_pred cc
Confidence 43
No 212
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=2.2e-05 Score=69.74 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=106.4
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHH-hhcCCC--------ChHHHHHHHHHHHHc
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL-LAVDPN--------NCDCIGNLGIAYFQS 213 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~--------~~~~~~~la~~~~~~ 213 (470)
+...++..+..-.+-++....+.+.+++..+..++..|++.+|.+.+... +...|. ....|.++|.+++++
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~ 296 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL 296 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh
Confidence 34444445555555555566677889999999999999999999988653 222332 223578999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc---cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS---VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
|.|.-+..+|.++++. ......-| +....-. ........++.|..+...|++-.|.++|.++......+|.
T Consensus 297 ~~y~~~~~~F~kAL~N----~c~qL~~g--~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 297 GCYQASSVLFLKALRN----SCSQLRNG--LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred hhHHHHHHHHHHHHHH----HHHHHhcc--CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 9999999999999961 11100000 0000000 0012334455677777999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012143 291 IWANLANAYYL 301 (470)
Q Consensus 291 ~~~~la~~~~~ 301 (470)
.|..++.+...
T Consensus 371 lWLRlAEcCim 381 (696)
T KOG2471|consen 371 LWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 213
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.1e-06 Score=70.43 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=84.5
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
++...+|+.|+..|.+++.++|..+..+.+.+.++++.++++.+....+++++++|+....++.+|........+++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 012143 222 CFQDLILK 229 (470)
Q Consensus 222 ~~~~~l~~ 229 (470)
.++++..+
T Consensus 100 ~Lqra~sl 107 (284)
T KOG4642|consen 100 VLQRAYSL 107 (284)
T ss_pred HHHHHHHH
Confidence 99999654
No 214
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.39 E-value=8.3e-07 Score=52.50 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 207 (470)
.++..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34455555555555555555555555555555555555544
No 215
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.37 E-value=1.5e-05 Score=57.43 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
+-..|......|+.+.|++.|.+++.+.|..+.+|.+.+..+..+|+.++|+..+++++++..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 334566666677777777777777777777777777777777777777777777777776543
No 216
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.34 E-value=1.7e-06 Score=51.21 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
+.++..+|.+|..+|++++|+..|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999999999999999999999999999999998874
No 217
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.33 E-value=2.9e-05 Score=67.63 Aligned_cols=135 Identities=18% Similarity=0.250 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ-SGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|..+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~- 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI- 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 566777777788889999999999987666678889999998666 566666999999999999999998888887776
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
..++.+.|..+|++++..-|... .+|......-...|+.+....+.+++.+..|++.
T Consensus 82 --------------------~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 --------------------KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp --------------------HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred --------------------HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 68889999999999998766644 5788888888889999999999999999888744
No 218
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.30 E-value=0.00067 Score=65.28 Aligned_cols=290 Identities=14% Similarity=0.041 Sum_probs=180.2
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc-----Cccc
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS-----DTRQ 165 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 165 (470)
...|..+++.+.+..- ......++.++..-+. -...|.+.|+.+|+.+... .-.+
T Consensus 228 ~~~a~~~~~~~a~~g~--------------~~a~~~~g~~y~~G~~------g~~~d~e~a~~~l~~aa~~~~~~a~~~~ 287 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH--------------SEAQYALGICYLAGTY------GVTQDLESAIEYLKLAAESFKKAATKGL 287 (552)
T ss_pred hhHHHHHHHHHHhhcc--------------hHHHHHHHHHHhhccc------cccccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4578888888776521 1222333333332212 2457899999999998761 1125
Q ss_pred hHHHHHHHHHHHHcC-----ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChHHH
Q 012143 166 AVVWNTLGLILLKSG-----RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+.+...+|.+|.... ++..|..+|.++-.. .++++.+.+|.++..-. ++..|.++|..+.. -.+..+.
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~ 363 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAI 363 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHH
Confidence 667888999998854 678899999998776 45778899999988765 67899999999875 4578888
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHH
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKAA 316 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~ 316 (470)
+.++.++..- .....+...|..++.++.+.. .+.+...++..+..- +.++.+...+....
T Consensus 364 ~~la~~y~~G-----------------~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 364 YRLALCYELG-----------------LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHhC-----------------CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 9999988742 124568899999999999887 456566666555443 77777776666555
Q ss_pred hcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 012143 317 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 396 (470)
Q Consensus 317 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (470)
...-..................... ....+...+...+.+..
T Consensus 425 ~~g~~~~q~~a~~l~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~a~ 466 (552)
T KOG1550|consen 425 ELGYEVAQSNAAYLLDQSEEDLFSR--------------------------------------GVISTLERAFSLYSRAA 466 (552)
T ss_pred HhhhhHHhhHHHHHHHhcccccccc--------------------------------------ccccchhHHHHHHHHHH
Confidence 4433322111100000000000000 00113333444444444
Q ss_pred cchhhhhHhhHHHHHHHh----ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cC--ChHHHHHHHHHHHHh
Q 012143 397 SKMEECAGAGESAFLDQA----SAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG--DHRSSGKCLEKVLMV 464 (470)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al~~ 464 (470)
...+..+...+|.+|..- .+++.|...|.++.... +...+++|.++.. .| ....|..+|.++.+.
T Consensus 467 ~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 467 AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 455555555566665543 34777777777777765 7777788877743 12 257777777777653
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.001 Score=54.76 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=123.2
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------------------h-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------------------C-DCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
+...|...-.++.+...+++|...+...-+++..+ | ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34566667777888888888887777665543221 1 1234456666778888877765554
Q ss_pred HHhh------------CCC-ChHHHH-HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC-CCCHH
Q 012143 226 LILK------------DQN-HPAALI-NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAH 290 (470)
Q Consensus 226 ~l~~------------~p~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 290 (470)
.... .|. ....|. .++.+.. .+..++...|.|.-....+.+.++.+ |..+.
T Consensus 148 L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy--------------~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 148 LKTVVSKILANLEQGLAEESSIRLWRKRLGRVMY--------------SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH--------------HHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 4321 111 111111 1111111 12344445677777777777777776 44666
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHH
Q 012143 291 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 370 (470)
Q Consensus 291 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (470)
....+|.+..+.|+.+.|..+|+++-+.... +... ...-.
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k------------------------------------L~~~----q~~~~ 253 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQK------------------------------------LDGL----QGKIM 253 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhh------------------------------------hhcc----chhHH
Confidence 7777777777777777777777765421111 0010 02223
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
+..+.+.++..++++..|...+.+.+. +.++.+-.+.|.|+...|+..+|++..+.++++.|..
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 455556666666677777666665333 4444445566666666777777777777777766653
No 220
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00023 Score=60.46 Aligned_cols=153 Identities=8% Similarity=-0.010 Sum_probs=124.3
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-CCCC---hHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN---CDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~g~~~~ 218 (470)
...|++.+|-...++.++..|.+.-++..--.+++..|+...-...+++.+-. +|+- .-+.-.++..+...|-|++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35677799999999999999999988888889999999999999999998876 6655 4456677788899999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----AAHIWAN 294 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~ 294 (470)
|.+.-+++++++|.+..+....+.++. ..|++.++.++..+.-..-.. ...-|..
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVle---------------------m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH 252 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLE---------------------MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH 252 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHH---------------------hcchhhhHHHHHHhcccchhhhhHHHhhhhHH
Confidence 999999999999999988888888876 689999999887764332111 1223556
Q ss_pred HHHHHHHcCChhHHHHHHHHHH
Q 012143 295 LANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 295 la~~~~~~g~~~~A~~~~~~a~ 316 (470)
-+.++..-+.|+.|++.|++-+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHH
Confidence 6778888899999999998754
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.26 E-value=9.5e-07 Score=48.50 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHH
Q 012143 63 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 96 (470)
Q Consensus 63 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 96 (470)
+|+++++.+|+++.+|+.+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788999999999999999999999999999863
No 222
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.23 E-value=0.0027 Score=60.02 Aligned_cols=295 Identities=14% Similarity=0.108 Sum_probs=159.9
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
-..|.-+...|+++.|+..|-.+-.+...- .+ .+...++.+|+.+++..
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~~~kai-------------ea------------------ai~akew~kai~ildni 758 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANCLIKAI-------------EA------------------AIGAKEWKKAISILDNI 758 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhhHHHHH-------------HH------------------HhhhhhhhhhHhHHHHh
Confidence 345777778899999999887765432110 00 23445678888877765
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH-H
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA-L 237 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~ 237 (470)
-.... ....|-.++.-|...|+|+-|.+.|.++ .....-...|.+.|+|.+|.+.-+++.. |..... +
T Consensus 759 qdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~y 827 (1636)
T KOG3616|consen 759 QDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLY 827 (1636)
T ss_pred hhhcc-ccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHH
Confidence 44332 2334556788888889999998888764 2233344567788888888887777643 333222 1
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH----------hcCCC-CHHHHHHHHHHHHHcCChh
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL----------KADPK-AAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~----------~~~p~-~~~~~~~la~~~~~~g~~~ 306 (470)
...+.-+-. -+.+...-.+|...|.++.|+..|.+.- +..|+ -.+.+..+|.-+...|+.+
T Consensus 828 iakaedlde--------hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 828 IAKAEDLDE--------HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred HHhHHhHHh--------hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChh
Confidence 122221111 1111111223344566666666665431 12333 3467788888899999999
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhc--------cCchHHhhhh----HHHHHHHhhcCCCCCCCcHHHHHH
Q 012143 307 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS--------QEPTEQLSWA----GNEMASILREGDPVQIEPPIAWAG 374 (470)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 374 (470)
.|...|-++-..... .....+.....++.+. .+..-.+.|+ .....+.+... -....
T Consensus 900 aae~~flea~d~kaa---vnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~--------gll~~ 968 (1636)
T KOG3616|consen 900 AAEEHFLEAGDFKAA---VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH--------GLLEA 968 (1636)
T ss_pred HHHHHHHhhhhHHHH---HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh--------hhHHH
Confidence 998888665332110 0000000011111000 0000001110 00001111100 00111
Q ss_pred HHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 375 FAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
-.......+-++-|...-+-.....-...+..++..+...|++++|.+.|-.+++++.-+
T Consensus 969 ~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 969 AIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 111223445566666666666666777788888889999999999999999999987544
No 223
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.21 E-value=0.002 Score=60.80 Aligned_cols=239 Identities=12% Similarity=0.064 Sum_probs=115.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH------H
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA------A 281 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~------~ 281 (470)
.+|.+.|.+-+|......--.+. .+......++..+.. ...+-..|.++.+..++++|+++|++ +
T Consensus 623 qlyika~~p~~a~~~a~n~~~l~-~de~il~~ia~alik--------~elydkagdlfeki~d~dkale~fkkgdaf~ka 693 (1636)
T KOG3616|consen 623 QLYIKAGKPAKAARAALNDEELL-ADEEILEHIAAALIK--------GELYDKAGDLFEKIHDFDKALECFKKGDAFGKA 693 (1636)
T ss_pred HHHHHcCCchHHHHhhcCHHHhh-ccHHHHHHHHHHHHh--------hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHH
Confidence 45667777766654332111111 122333333333321 22333457888889999999999875 3
Q ss_pred Hhc----CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHH----HHHHHHHHHHhhhc---cCchHHhhh
Q 012143 282 LKA----DPKA-AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR----YAVAVSRIKDAERS---QEPTEQLSW 349 (470)
Q Consensus 282 ~~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~----~~l~~~~~~~~~~~---~~~~~~~~~ 349 (470)
+++ .|.. ...-..-|.-+...|+++.|+..|-.+-..-..-..+. +..++..+...... .........
T Consensus 694 ielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iad 773 (1636)
T KOG3616|consen 694 IELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIAD 773 (1636)
T ss_pred HHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHH
Confidence 333 2332 12223346677788899998888865432211000000 00011001000000 000000000
Q ss_pred ------hHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhh-HhhHHHHHHHhccH-----
Q 012143 350 ------AGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA-GAGESAFLDQASAV----- 417 (470)
Q Consensus 350 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~----- 417 (470)
-++.....+.+. .........|.+.|++..|.+.-.+...|..... +...+.-+-..|+|
T Consensus 774 hyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 774 HYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred HhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 011111111111 1233344566777777777777666555544422 33444444455554
Q ss_pred --------HHHHHHHHHHH------h----cCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 418 --------NVAKECLLAAL------K----ADPKA-AHIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 418 --------~~A~~~~~~al------~----~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
+.|+.+|.+.- . ..|+. .+.+..+|.-+...|+.+.|...|-++-+
T Consensus 846 lyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 846 LYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred eeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 45555554321 1 23333 46778889999999999999888766543
No 224
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.17 E-value=2.4e-06 Score=75.95 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=97.5
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..+.|+.|+..|.++++++|+.+..+-+.+.++.+.+++..|+..+.++++.+|....+|+..|.+....+.+.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
.|+....+.|+++.+...+..+-.
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999988776655543
No 225
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00011 Score=59.39 Aligned_cols=126 Identities=19% Similarity=0.127 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
..++...|+-++..|+|.+|...|+.|+....+-. .-. +.|+.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~--------------------lkE-----------kP~e~------ 220 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQ--------------------LKE-----------KPGEP------ 220 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHH--------------------hcc-----------CCCCh------
Confidence 34666778888888888888888888776421100 000 00000
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
+.++++......+.+.+.|+...|+|-++++.....+..+|.+..+++..|.+....-+..+|...|.++++++|.-.
T Consensus 221 --eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 221 --EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred --HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 112222233557888999999999999999999999999999999999999999999999999999999999999776
Q ss_pred HHHHH
Q 012143 235 AALIN 239 (470)
Q Consensus 235 ~~~~~ 239 (470)
.+...
T Consensus 299 svVsr 303 (329)
T KOG0545|consen 299 SVVSR 303 (329)
T ss_pred HHHHH
Confidence 65443
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0014 Score=53.31 Aligned_cols=87 Identities=17% Similarity=0.076 Sum_probs=49.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhc--------chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhc----CCCcHHHH
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESAFLDQASAVNVAKECLLAALKA----DPKAAHIW 438 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~ 438 (470)
.+...+.++.+..++.+|-..+.+... +.+...+.....++....+|..|..+++..-++ .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 344455566666666666666555222 122233444444566667888888888876654 34445555
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 012143 439 ANLANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 439 ~~la~~~~~~g~~~~A~~~~ 458 (470)
.+|-.. +..||.++..+.+
T Consensus 232 enLL~a-yd~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTA-YDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHH-hccCCHHHHHHHH
Confidence 555554 3456666655543
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.14 E-value=0.0038 Score=54.49 Aligned_cols=247 Identities=15% Similarity=0.078 Sum_probs=146.4
Q ss_pred hhhhcChhhHHHHHHHHHHhC----CCC----hhHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHhh-hhcccchhhh-HH
Q 012143 51 SSREEKVSSLKTGLVHVARKM----PKN----AHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLR-CEADIARPEL-LS 119 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~----p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-~~~~~~~~~~-~~ 119 (470)
...+|+++.|...+.++-... |+. ...++..|......+ +++.|..+++++.++... .......++. --
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999986544 333 236677888888889 999999999999998544 2222222222 12
Q ss_pred HHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-C
Q 012143 120 LVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-N 198 (470)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~ 198 (470)
...+...++.++...+.. ...++|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++..-+ .
T Consensus 83 r~~iL~~La~~~l~~~~~--------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~ 154 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY--------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS 154 (278)
T ss_pred HHHHHHHHHHHHHcCCCh--------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc
Confidence 234555566655444432 4566788888888888898888886666666668999999999999987644 1
Q ss_pred ChHHHHHHHHH-HHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 199 NCDCIGNLGIA-YFQSGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 199 ~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
....-..+..+ .........|...+...+.. .|.... +.....+........ ..-....++.+...
T Consensus 155 e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~----------~~~~~~~~~i~~l~ 223 (278)
T PF08631_consen 155 ESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQ----------SKDLSSSEKIESLE 223 (278)
T ss_pred cchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcC----------CccccchhHHHHHH
Confidence 12221212222 12234456777777777743 333322 333332222100000 00000011133333
Q ss_pred HHHHHHHhc--CCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 276 ECLLAALKA--DPKAA-------HIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 276 ~~~~~~~~~--~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
.++....+. .|-.+ ....+.|...++.++|++|..+|+-++
T Consensus 224 ~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 224 ELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333322211 12222 345667888999999999999999766
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00042 Score=56.24 Aligned_cols=194 Identities=15% Similarity=0.226 Sum_probs=129.9
Q ss_pred hcccchhhhhcChhhHHHHHHHHHHhCCCChh------HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 45 GLGTSSSSREEKVSSLKTGLVHVARKMPKNAH------AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 45 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
.-+.. +....++++|..++.++.+-..+|.. ++-..|.+......+.++..+|+++..+...... |+..
T Consensus 36 kAAva-fRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs----pdtA 110 (308)
T KOG1585|consen 36 KAAVA-FRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS----PDTA 110 (308)
T ss_pred HHHHH-HHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC----cchH
Confidence 33444 77788999999999999865554432 4445666777788899999999999887544322 1111
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
. .+.-.-+. .++.-++++|+.+|++++..-..+ .+.+...+.++.+..++.+|-..+.+-
T Consensus 111 A--maleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 111 A--MALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred H--HHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 1 11111111 356778899999999997754322 345666788899999999998888775
Q ss_pred hhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHhhhcccccccccchhhh
Q 012143 193 LAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK----DQNHPAALINYAALLLCKYGSVLAGAGANTGEG 262 (470)
Q Consensus 193 ~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 262 (470)
... .|+....+.....+|....+|..|..+++..-++ .|++..+..+|...|
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay------------------ 238 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY------------------ 238 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh------------------
Confidence 432 2333445666667777778999999999987654 344555555555555
Q ss_pred hHHHhcCCHHHHHHHHH
Q 012143 263 ACLDQASAVNVAKECLL 279 (470)
Q Consensus 263 ~~~~~~~~~~~A~~~~~ 279 (470)
..|+.++..+++.
T Consensus 239 ----d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 ----DEGDIEEIKKVLS 251 (308)
T ss_pred ----ccCCHHHHHHHHc
Confidence 4777777766655
No 229
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.09 E-value=0.0041 Score=59.98 Aligned_cols=149 Identities=22% Similarity=0.148 Sum_probs=116.3
Q ss_pred cHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc-----CChHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHHcC--
Q 012143 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKS-----GRLQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSG-- 214 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g-- 214 (470)
+...|..+++.+... .+..+...+|.+|..- .+.+.|+.+|+.+... ....+.+...+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 457888888887765 4567778888887764 6899999999999771 1225668899999998843
Q ss_pred ---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 215 ---DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 215 ---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
+...|+.+|.++-... ++.+.+.+|.++... . ...++..|.++|..+... .+..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g---------------~---~~~d~~~A~~yy~~Aa~~--G~~~A 362 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG---------------T---KERDYRRAFEYYSLAAKA--GHILA 362 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC---------------C---ccccHHHHHHHHHHHHHc--CChHH
Confidence 7788999999998754 567788889888741 1 235688999999999864 45788
Q ss_pred HHHHHHHHHHc----CChhHHHHHHHHHHhcC
Q 012143 292 WANLANAYYLT----GDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 292 ~~~la~~~~~~----g~~~~A~~~~~~a~~~~ 319 (470)
.+.++.+|..- .+...|..+++++.+..
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 89999888753 47889999999999887
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.09 E-value=0.00024 Score=64.01 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=116.0
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC---------------------C---
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---------------------N--- 199 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------~--- 199 (470)
+..+...-++..+++++++|+.+.+|..++.- ......+|..+|+++++.... +
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 56778888999999999999999999888753 233467778888877764110 0
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 200 -CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 200 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
..+...+|.|..++|+.++|++.++..++..|. +...+.++...+. ..+.|.++..
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL---------------------elq~Yad~q~ 316 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL---------------------ELQAYADVQA 316 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH---------------------hcCCHHHHHH
Confidence 235678999999999999999999999988775 4456677777776 6888999988
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHc-CC---------------hhHHHHHHHHHHhcCCCcccH
Q 012143 277 CLLAALKA-DPKAAHIWANLANAYYLT-GD---------------HRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 277 ~~~~~~~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~a~~~~p~~~~~ 325 (470)
.+.+--++ -|+.+...+.-+.+-.+. ++ -..|++.+.+|++.+|.-+..
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 88885443 355666666655544331 11 134778899999999986653
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.08 E-value=0.00014 Score=63.42 Aligned_cols=127 Identities=10% Similarity=0.062 Sum_probs=100.7
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHH-cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
+.+..+.|..+|.++....+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+...|+.+.|...
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 34557999999999997777788999999999777 56666699999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCh---HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 223 FQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 223 ~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
|++++..-|... ..|......-. +.|+.+....+..++.+..|+....
T Consensus 93 fer~i~~l~~~~~~~~iw~~~i~fE~---------------------~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 93 FERAISSLPKEKQSKKIWKKFIEFES---------------------KYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHCCTSSCHHHCHHHHHHHHHHHH---------------------HHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999998866655 34444433333 6899999999999999998884443
No 232
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.009 Score=53.82 Aligned_cols=389 Identities=12% Similarity=0.011 Sum_probs=194.6
Q ss_pred hhcccchhhhhc--ChhhHHHHHHHHHHhCCCC---hhHHHHHHHHHH-HhCChhHHHHHHHHHHHHHhhhhcccchhhh
Q 012143 44 SGLGTSSSSREE--KVSSLKTGLVHVARKMPKN---AHAHFLLGLMYQ-RLGQPLKAVSSYEKAEEILLRCEADIARPEL 117 (470)
Q Consensus 44 ~~~~~~~~~~~~--~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 117 (470)
..++.. +...| ++..++++++.+....|.+ +..+..+|.+++ ...+++.|...++++..+... .|.+
T Consensus 11 lGlAe~-~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~------ip~f 83 (629)
T KOG2300|consen 11 LGLAEH-FRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS------IPSF 83 (629)
T ss_pred HHHHHH-HhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc------cccH
Confidence 344444 55566 7889999999998887765 346677777655 578999999999999987422 1211
Q ss_pred H-HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch----HHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 118 L-SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA----VVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
. .-......++.++... ...+..+...++++++.....| ...+.++.++.-..++..|++.+.-.
T Consensus 84 ydvKf~a~SlLa~lh~~~----------~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavg 153 (629)
T KOG2300|consen 84 YDVKFQAASLLAHLHHQL----------AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVG 153 (629)
T ss_pred HhhhhHHHHHHHHHHHHh----------cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcc
Confidence 1 0011111122222111 1146889999999998876665 35667899999999999999985443
Q ss_pred hhc-CCCC---hHHHHHH--HHHHHHcCCH---HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhh
Q 012143 193 LAV-DPNN---CDCIGNL--GIAYFQSGDM---EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 263 (470)
Q Consensus 193 ~~~-~~~~---~~~~~~l--a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (470)
.+. ++.. ....+.+ +.+.....+. ..+.....+.......++.-...+-..|... .-.
T Consensus 154 a~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~l-------------ql~ 220 (629)
T KOG2300|consen 154 AESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVL-------------QLS 220 (629)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH-------------HHH
Confidence 322 1111 1122222 2233333333 3344444444443333332222222222110 011
Q ss_pred HHHhcCCHHHHHHHHHHH---Hhc-CCC------------CHH--HHHHH----HHHH-------HHcCChhHHHHHHHH
Q 012143 264 CLDQASAVNVAKECLLAA---LKA-DPK------------AAH--IWANL----ANAY-------YLTGDHRSSGKCLEK 314 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~---~~~-~p~------------~~~--~~~~l----a~~~-------~~~g~~~~A~~~~~~ 314 (470)
.|.-.|+...+...+++. +.. .+. .+. .|.-. +.+| ...|-+++|.++-++
T Consensus 221 yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe 300 (629)
T KOG2300|consen 221 YYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDE 300 (629)
T ss_pred HHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHH
Confidence 233456655555554433 221 110 011 11100 1111 234667788887777
Q ss_pred HHhcCCCc------ccHHHHHHHHHHHHhhhc---cCchHHhhhhHHHHHHHhhcCCC---CCCCcHHHHHHHHHHHhcc
Q 012143 315 AAKLEPNC------MSTRYAVAVSRIKDAERS---QEPTEQLSWAGNEMASILREGDP---VQIEPPIAWAGFAAVQKTH 382 (470)
Q Consensus 315 a~~~~p~~------~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 382 (470)
++...... ......+-+..++..... ..........+.++......... .....+.+...+|.....-
T Consensus 301 ~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv 380 (629)
T KOG2300|consen 301 AIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSV 380 (629)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhc
Confidence 77543221 111111111111111100 01111111112222222222111 1113445666666666667
Q ss_pred ccHHHHHHHHHHHhcchhh-----hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHH
Q 012143 383 HEVAAAFETEENELSKMEE-----CAGAGESAFLDQASAVNVAKECLLAALKADPKA----------AHIWANLANAYYL 447 (470)
Q Consensus 383 ~~~~~A~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~ 447 (470)
+-++.|...|..+...... ....++|.+|.+.++-+.--+.++. +.|.+ ..+++..|...+.
T Consensus 381 ~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 381 NCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 7777777777765543222 2234777777776654443333332 33432 3456667777777
Q ss_pred cCChHHHHHHHHHHHHhh
Q 012143 448 TGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 448 ~g~~~~A~~~~~~al~~~ 465 (470)
++++.+|...+.+.++..
T Consensus 458 qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hccHHHHHHHHHHHHhhc
Confidence 788888888777777665
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00036 Score=59.38 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=107.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHhhhcc
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~ 250 (470)
-+.+....|++.+|....++.++-.|.+.-++..--.+++.+|+...-...+++++.. +|+-|-..+.-|...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya------ 182 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA------ 182 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHH------
Confidence 3456677899999999999999999999999988889999999999999999999977 666654433333322
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
..+...|-|++|.+..+++++++|.+..+...++.++...|+++++.+...+.-
T Consensus 183 ------------FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 183 ------------FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred ------------hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 234579999999999999999999999999999999999999999999887643
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00044 Score=58.12 Aligned_cols=177 Identities=15% Similarity=0.110 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHH
Q 012143 22 RSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKA 101 (470)
Q Consensus 22 ~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 101 (470)
++.+.+.+.+.+.. ....-+..+.. ....|++..|...|..++...|++.++...++.++...|+.+.|...+...
T Consensus 119 esqlr~~ld~~~~~---~~e~~~~~~~~-~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 119 ESQLRQFLDKVLPA---EEEEALAEAKE-LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHHHHhcCh---HHHHHHHHhhh-hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 44443344444333 33344556666 889999999999999999999999999999999999999999999888764
Q ss_pred HHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC
Q 012143 102 EEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR 181 (470)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 181 (470)
-...... .... ......+..-.. ..++ ...+++.+..+|++..+-+.+|..+...|+
T Consensus 195 P~~~~~~-------~~~~-l~a~i~ll~qaa-----------~~~~----~~~l~~~~aadPdd~~aa~~lA~~~~~~g~ 251 (304)
T COG3118 195 PLQAQDK-------AAHG-LQAQIELLEQAA-----------ATPE----IQDLQRRLAADPDDVEAALALADQLHLVGR 251 (304)
T ss_pred cccchhh-------HHHH-HHHHHHHHHHHh-----------cCCC----HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3221110 1100 001000000000 0111 234555677799999999999999999999
Q ss_pred hHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 182 LQSSISVLSSLLAVDP--NNCDCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 182 ~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
.+.|.+.+-..++.+. .+..+...+-.++...|.-+.+...+++
T Consensus 252 ~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 252 NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999988887754 3455666666666666644444444433
No 235
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.01 E-value=1.3e-05 Score=44.37 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3678899999999999999999999999998873
No 236
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.02 Score=56.48 Aligned_cols=229 Identities=16% Similarity=0.133 Sum_probs=125.8
Q ss_pred cHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
.++.|.++.++. +.+.+|..+|.+..+.|...+|++.|-++ +++..+.....+..+.|.|++-+.++.-+
T Consensus 1090 ~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1090 SLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345565555543 44778888888888888888888888764 56677788888888888888888887776
Q ss_pred HhhC--CCC-hHHHHHHHHHHHh-hhcccc----------------------------cccccchhhhhHHHhcCCHHHH
Q 012143 227 ILKD--QNH-PAALINYAALLLC-KYGSVL----------------------------AGAGANTGEGACLDQASAVNVA 274 (470)
Q Consensus 227 l~~~--p~~-~~~~~~l~~~~~~-~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~A 274 (470)
.+.. |.- ....+.++.+-.- ...... .....+..++..+...|+|..|
T Consensus 1160 Rkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1160 RKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 5432 111 1111111111000 000000 0123344466667777888877
Q ss_pred HHHHHHHHhcCC-----------C--------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 275 KECLLAALKADP-----------K--------------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 275 ~~~~~~~~~~~p-----------~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
.+.-+++-.... . .++-+-.+...|...|-+++-+..++.++-+...+......+
T Consensus 1240 VD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1240 VDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred HHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 777776532210 0 223344566667778888888888888877665554444444
Q ss_pred HHHHHHHhhhccCchH--HhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHH
Q 012143 330 AVSRIKDAERSQEPTE--QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 392 (470)
Q Consensus 330 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 392 (470)
+..+-. .+...-.+ .+-|..-.+.+.++.. +....|..+.-+|.+-..|+.|.-..
T Consensus 1320 aiLYsk--ykp~km~EHl~LFwsRvNipKviRA~-----eqahlW~ElvfLY~~y~eyDNAa~tm 1377 (1666)
T KOG0985|consen 1320 AILYSK--YKPEKMMEHLKLFWSRVNIPKVIRAA-----EQAHLWSELVFLYDKYEEYDNAALTM 1377 (1666)
T ss_pred HHHHHh--cCHHHHHHHHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 432211 00000000 1111111122222221 22457888888888777777665543
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.99 E-value=1.5e-05 Score=44.10 Aligned_cols=31 Identities=39% Similarity=0.572 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555543
No 238
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.0001 Score=59.59 Aligned_cols=114 Identities=15% Similarity=0.212 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLIL--------KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~--------~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (470)
..++..-|.-++..|+|.+|...|..++. -.|..++ |..+..... ..+.+...|+...|+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~eLdk~~t----------pLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WLELDKMIT----------PLLLNYCQCLLKKEEY 246 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HHHHHHhhh----------HHHHhHHHHHhhHHHH
Confidence 34566667777777777777777776653 2344443 333322211 1223345566689999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 272 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 272 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
-++++.....+..+|.+..+++..|.++...=+..+|...|.++++++|.-..
T Consensus 247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999999999999999999998543
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.97 E-value=2.4e-05 Score=43.24 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+++.+|.++..+|++++|++.|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.95 E-value=2.3e-05 Score=43.34 Aligned_cols=34 Identities=38% Similarity=0.637 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
+.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678889999999999999999999999998874
No 241
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.94 E-value=0.0016 Score=59.84 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCc
Q 012143 59 SLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 138 (470)
Q Consensus 59 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (470)
.-...+...++.+|.++..+..-+.....+|+..+|..++..++...|..... .- ...+|.++
T Consensus 197 ~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kd---i~-------lLSlaTiL------- 259 (886)
T KOG4507|consen 197 DIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKD---IA-------LLSLATVL------- 259 (886)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCccccc---ch-------hhhHHHHH-------
Confidence 34455666777888877766666666667899999999999999886542211 11 12233333
Q ss_pred cccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH
Q 012143 139 LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 139 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
.+.|...+|--++..++...|....-++.++.++...+.+.....+|..+.+.+|....
T Consensus 260 ----~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 260 ----HRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ----HHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 34444578888888888887777777999999999999999999999999999887643
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.91 E-value=0.0017 Score=61.01 Aligned_cols=168 Identities=17% Similarity=0.072 Sum_probs=110.0
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHH-H--hcCCHHHHHHHHHHHHhcCCCC
Q 012143 212 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL-D--QASAVNVAKECLLAALKADPKA 288 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~A~~~~~~~~~~~p~~ 288 (470)
-.|+-+.++..+.++.+. ++-......+..+.+.. .+-... . .....+.|.+++....+..|+.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~------------~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s 266 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHL------------VVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS 266 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHH------------HHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc
Confidence 468999999999998773 32222222222211100 000000 1 3667889999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCc
Q 012143 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP 368 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (470)
+-..+..|+++...|+.++|++.|++++.....-..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q-------------------------------------------- 302 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ-------------------------------------------- 302 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh--------------------------------------------
Confidence 999999999999999999999999998843222110
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Q 012143 369 PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYL 447 (470)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 447 (470)
...-.++.+|.++....+|++|..+|.+..+.+.-+ ....|..|.|+..
T Consensus 303 ------------------------------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 303 ------------------------------LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 011123455556777777777777777777765443 3344666777777
Q ss_pred cCCh-------HHHHHHHHHHHHhhc
Q 012143 448 TGDH-------RSSGKCLEKVLMVYC 466 (470)
Q Consensus 448 ~g~~-------~~A~~~~~~al~~~~ 466 (470)
.|+. ++|.+.|.++-.+..
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHh
Confidence 8877 667777766655543
No 243
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.90 E-value=0.0065 Score=55.53 Aligned_cols=66 Identities=17% Similarity=0.034 Sum_probs=49.5
Q ss_pred hhHhhHHHHHHHh------ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh-----------------HHHHHHH
Q 012143 402 CAGAGESAFLDQA------SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-----------------RSSGKCL 458 (470)
Q Consensus 402 ~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------~~A~~~~ 458 (470)
.++..+|...... +..++++..|.++++.+|+...+|+.+|..+...=+. ..|+..|
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 4455566655566 7889999999999999999999999999887544221 3477777
Q ss_pred HHHHHhhcc
Q 012143 459 EKVLMVYCS 467 (470)
Q Consensus 459 ~~al~~~~~ 467 (470)
-+++.+.++
T Consensus 333 ~~al~~~~~ 341 (352)
T PF02259_consen 333 LKALSLGSK 341 (352)
T ss_pred HHHHhhCCC
Confidence 777776654
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00086 Score=56.42 Aligned_cols=135 Identities=21% Similarity=0.201 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
+.-+.-+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....... ..-..+.+-.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~l- 212 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIEL- 212 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHH-
Confidence 34455666677788888888888888888888888888888888888888888777765432222111 1111111111
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
+.+.....+. ..+.+.+..+|++..+-+.+|..+...|+.+.|.+.+-..++.+...
T Consensus 213 ------------------l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 213 ------------------LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred ------------------HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 0012222211 23455566688888888888888888888888888887777765543
No 245
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.87 E-value=3.3e-05 Score=68.94 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
-.-+...+.-+.++.|+..|.++++++|+.+..+.+.+..+.+.+++..|+..+.++++.+|....+++..|....
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m---- 83 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM---- 83 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH----
Confidence 3456677888999999999999999999999999999999999999999999999999999999999888887777
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 301 (470)
..+.+.+|...|+....+.|+++.+...+..+-..
T Consensus 84 -----------------~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 84 -----------------ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred -----------------hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 68999999999999999999999998887776543
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.85 E-value=0.011 Score=52.75 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCCChHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCChHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQ---SGDMEQSAKCFQD-LILKDQNHPAA 236 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~p~~~~~ 236 (470)
.+++..++-.+|....+|+.-+...+..-.+ -++.+.+.+.+|.++-+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3566778888899999999999999887666 45567788899999998 9999999999999 55566788899
Q ss_pred HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 237 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
+..+|.+|-...... ........++|+.+|.++.+++|+ ...-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s------------~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLES------------NFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHc------------CccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 999999987431100 000122366677777777776643 3444555555555554
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.84 E-value=0.0037 Score=55.62 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=114.4
Q ss_pred ccCcccHHHHHHHHHHhhhc----CccchHHHHHHHHHHHH---cCChHHHHHHHHH-HhhcCCCChHHHHHHHHHHHH-
Q 012143 142 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLK---SGRLQSSISVLSS-LLAVDPNNCDCIGNLGIAYFQ- 212 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-a~~~~~~~~~~~~~la~~~~~- 212 (470)
|....+|+.-+++.+..-.. -++.+.+.+.+|.++-+ .|+.++|+..+.. .....+.+++.+..+|.+|-.
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 34567788888888887665 45667788889999999 9999999999999 555677889999999999853
Q ss_pred --------cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH----
Q 012143 213 --------SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA---- 280 (470)
Q Consensus 213 --------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~---- 280 (470)
....++|+..|.++.+.+|+.... .+++.++...+.... ......+-...+..
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~g~~~~--------------~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLAGHDFE--------------TSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHcCCccc--------------chHHHHHHHHHHHHHHHh
Confidence 235789999999999999765444 445555442211100 00000000001111
Q ss_pred -HHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 281 -ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 281 -~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.....-.+...+-.++.+..-.|++++|+..+++++...|...
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1111223455667788889999999999999999999876643
No 248
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.022 Score=51.50 Aligned_cols=419 Identities=13% Similarity=0.068 Sum_probs=232.5
Q ss_pred hhhhhhhh--hhHHHHHHHHHHHHhcCCCC---cchhhhcccchhhhhcChhhHHHHHHHHHHhC---CCC----hhHHH
Q 012143 12 GKKINKLG--KCRSRISSKMDSALEFGVDA---DGDQSGLGTSSSSREEKVSSLKTGLVHVARKM---PKN----AHAHF 79 (470)
Q Consensus 12 ~~~~~~~g--~~~~a~~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~----~~~~~ 79 (470)
+..++..| +.+..+ ..++..+...|.+ +.....+|.+++....+++.|+..++++..+. |.. ..+.-
T Consensus 14 Ae~~rt~~PPkIkk~I-kClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCI-KCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHhhcCChhHHHHH-HHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 34466677 778888 6777666666653 44667888886778999999999999987554 443 34677
Q ss_pred HHHHHHHHhC-ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 80 LLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 80 ~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
.|+.+|.... .+..|...+++++++.... |-+ .+.....++.+ +.-..++..|++.+.-.
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~------p~w--sckllfQLaql-----------~~idkD~~sA~elLavg 153 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSV------PYW--SCKLLFQLAQL-----------HIIDKDFPSALELLAVG 153 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCC------chh--hHHHHHHHHHH-----------HhhhccchhHHHHHhcc
Confidence 8999999887 8999999999999985332 211 11222222222 23456678888775433
Q ss_pred hhc-Ccc---chHHHHH--HHHHHHHcCChH---HHHHHHHHHhhcCCCCh-------HHHHHHHHHH-HHcCCHHHHHH
Q 012143 159 MQS-DTR---QAVVWNT--LGLILLKSGRLQ---SSISVLSSLLAVDPNNC-------DCIGNLGIAY-FQSGDMEQSAK 221 (470)
Q Consensus 159 ~~~-~p~---~~~~~~~--l~~~~~~~~~~~---~A~~~~~~a~~~~~~~~-------~~~~~la~~~-~~~g~~~~A~~ 221 (470)
... +|- ...+.+. .+.++....+.. .+.....+.++....++ ..+..+-.+| ...|+...+..
T Consensus 154 a~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~ 233 (629)
T KOG2300|consen 154 AESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKP 233 (629)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHH
Confidence 221 111 1122222 233333333333 33444444443322222 1333343333 45677666665
Q ss_pred HHHHH---Hhh-CCC-----------ChH---HHHH----HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 222 CFQDL---ILK-DQN-----------HPA---ALIN----YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 222 ~~~~~---l~~-~p~-----------~~~---~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
.+++. +.. .+. ++. .|.- -+.++.. .-.--...|-+++|.++-+
T Consensus 234 ~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~--------------tv~hsm~~gy~~~~~K~tD 299 (629)
T KOG2300|consen 234 ALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLV--------------TVIHSMPAGYFKKAQKYTD 299 (629)
T ss_pred HHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhh--------------HHhhhhhhHHHHHHHHHHH
Confidence 55543 221 111 100 0100 0111110 0000013566677777777
Q ss_pred HHHhcC------CCC--------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH---HHHH--HHHHHhhhc
Q 012143 280 AALKAD------PKA--------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY---AVAV--SRIKDAERS 340 (470)
Q Consensus 280 ~~~~~~------p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~---~l~~--~~~~~~~~~ 340 (470)
+++..- |.. ...+..+..+-.-.|++.+|++....+.+.....+.... .-+. ..++.....
T Consensus 300 e~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s 379 (629)
T KOG2300|consen 300 EAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS 379 (629)
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh
Confidence 766542 211 123445666777889999999988877765433333111 1110 111111111
Q ss_pred cCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc---------hhhhhHhhHHHHH
Q 012143 341 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK---------MEECAGAGESAFL 411 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~l~~~~ 411 (470)
...+..+...+..........+. .+..-.+++..|.+.++-+.-.+.....-.+ ....+++-.|...
T Consensus 380 ---v~~~enAe~hf~~a~k~t~~~dl-~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 380 ---VNCYENAEFHFIEATKLTESIDL-QAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred ---cchHHHHHHHHHHHHHhhhHHHH-HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 11122222223333332222111 2345668899999988777666655542211 1224566777788
Q ss_pred HHhccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 412 DQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 412 ~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+..+++.+|...+.+.+++... ..-.+..||.+....|+..++.+...-++++..+.
T Consensus 456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 8999999999999999987521 13456778999999999999999988888876543
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.82 E-value=0.001 Score=62.47 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=77.8
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHcCCHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQS 219 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A 219 (470)
...+.+.|.+.+.......|+.+-.++..|.++...|+.++|++.|++++.....- .-+++.+|.++..+++|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 34577999999999999999999999999999999999999999999988543332 34788999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 012143 220 AKCFQDLILKDQN 232 (470)
Q Consensus 220 ~~~~~~~l~~~p~ 232 (470)
..+|.+..+.+.-
T Consensus 325 ~~~f~~L~~~s~W 337 (468)
T PF10300_consen 325 AEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHhcccc
Confidence 9999999986544
No 250
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.0038 Score=49.16 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=78.6
Q ss_pred HHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 150 EILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
+.....++....+|.. .-+...++..+...|++++|+..++.++....+. .-+-.+++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444555545443 3355678889999999999999999988754432 346788999999999999999888
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 224 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 224 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
...-. ..|..+..-+ .|+++...|+-++|+..|.+++...++
T Consensus 150 ~t~~~------~~w~~~~~el----------------rGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKE------ESWAAIVAEL----------------RGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccc------ccHHHHHHHH----------------hhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 76432 1222222111 255555788888888888888877644
No 251
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.014 Score=48.26 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=117.9
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH-HHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME-QSAKCFQD 225 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~ 225 (470)
-..|+.+-..++..+|-+..+|...-.++..++ +..+-++++...++-+|++..+|...-.+....|++. .-++..+.
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 367888888888888888888777666665553 5667778888888888888888888888888888887 77888888
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC-
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG- 303 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g- 303 (470)
++..+..+-.+|...-.+.. .-+.++.-+.+..+.++.+-.+-.+|...--+... .|
T Consensus 139 ~l~~DaKNYHaWshRqW~~r---------------------~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~ 197 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHRQWVLR---------------------FFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGV 197 (318)
T ss_pred HHhccccchhhhHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCC
Confidence 88888888888877777666 35668888888888888776665665543222222 11
Q ss_pred ----ChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 304 ----DHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 304 ----~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
..+.-+.+..+.+...|++..+|..+.
T Consensus 198 ~~~~~le~El~yt~~~I~~vP~NeSaWnYL~ 228 (318)
T KOG0530|consen 198 ISKAELERELNYTKDKILLVPNNESAWNYLK 228 (318)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 123445667777888888888877543
No 252
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.74 E-value=0.0022 Score=49.92 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=80.0
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
...|......|+...++..+++++.+...+-- ++. .. ..-.......++..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l----~~~-----------------~~--------~~W~~~~r~~l~~~ 60 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFL----PDL-----------------DD--------EEWVEPERERLREL 60 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTT----GGG-----------------TT--------STTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCC----CCC-----------------Cc--------cHHHHHHHHHHHHH
Confidence 33455666778899999999999886422110 000 00 00112333333332
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
...+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++..
T Consensus 61 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 ------YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp ------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2467778899999999999999999999999999999999999999999999999999998854
No 253
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.73 E-value=0.028 Score=51.30 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=110.9
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP----NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP--- 234 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--- 234 (470)
.......|...+.+....|+++.|...+.++...++ ..+.+.+..+.+....|+..+|+..++..+.......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445677899999999999999999999999988652 2577888999999999999999999999887211111
Q ss_pred HHHHHHHHHH----Hh------hhcccccccccchhhhhHHHhc------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 235 AALINYAALL----LC------KYGSVLAGAGANTGEGACLDQA------SAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 235 ~~~~~l~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
.....+.... .. ........+..+..+|...... +..++++..|.++++.+|....+|...|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0000000000 00 0000001123344456666666 889999999999999999999999999887
Q ss_pred HHHcCCh-----------------hHHHHHHHHHHhcCCC
Q 012143 299 YYLTGDH-----------------RSSGKCLEKAAKLEPN 321 (470)
Q Consensus 299 ~~~~g~~-----------------~~A~~~~~~a~~~~p~ 321 (470)
+...=+. ..|+..|-+++...+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7654221 3477777777777766
No 254
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.73 E-value=0.031 Score=50.10 Aligned_cols=404 Identities=10% Similarity=-0.027 Sum_probs=198.4
Q ss_pred HHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 28 KMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 28 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
.+..-+..+|.+...|+.+-.. +..+|.+++-.+.+++.....|-.+.+|...-.--...++|..-...|-+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~-~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQY-LETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHH-HhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 5667778899999999999999 999999999999999999988988888877766666778898888888888875321
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHH---------H
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILL---------K 178 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---------~ 178 (470)
-+ ...-+++.++-...++. |+ ..-.+-+|.+..-...-.+|.....|...+..+. .
T Consensus 109 ld---LW~lYl~YIRr~n~~~t-----Gq-------~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEe 173 (660)
T COG5107 109 LD---LWMLYLEYIRRVNNLIT-----GQ-------KRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEE 173 (660)
T ss_pred Hh---HHHHHHHHHHhhCcccc-----cc-------hhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHH
Confidence 00 00111111111111110 00 1111233333333333456777777776666543 2
Q ss_pred cCChHHHHHHHHHHhhcCCCChH-HHHHHHH---------HH----HHcCCHHHHHHHHHHHHhh-------CCCChHH-
Q 012143 179 SGRLQSSISVLSSLLAVDPNNCD-CIGNLGI---------AY----FQSGDMEQSAKCFQDLILK-------DQNHPAA- 236 (470)
Q Consensus 179 ~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~---------~~----~~~g~~~~A~~~~~~~l~~-------~p~~~~~- 236 (470)
+.+.+.-...|.+++...-++.. .|...-. .- ...--|..|...+++...+ +|.+...
T Consensus 174 Qqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~ 253 (660)
T COG5107 174 QQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTA 253 (660)
T ss_pred HHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhh
Confidence 34455666677777765433321 1111110 00 1111244555555554432 1211111
Q ss_pred ----------HHHHHHHHHhhhcccccccccchhhhhHHHhcCCH-H-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 237 ----------LINYAALLLCKYGSVLAGAGANTGEGACLDQASAV-N-VAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 237 ----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
|.+...--.. + -+.-.|+. . .---.+++++..-|-.+++|+.-.......++
T Consensus 254 nK~~r~s~S~WlNwIkwE~e--n--------------~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd 317 (660)
T COG5107 254 NKAARTSDSNWLNWIKWEME--N--------------GLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISD 317 (660)
T ss_pred ccccccccchhhhHhhHhhc--C--------------CcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccH
Confidence 1111111000 0 00001111 1 11223455555555566666666666666666
Q ss_pred hhHHHHHHHHHHhcCCCcccHHHHHHHHH-----HHHhhhccCch-HHhhhhHHHHHHHhhcCCCCCC------------
Q 012143 305 HRSSGKCLEKAAKLEPNCMSTRYAVAVSR-----IKDAERSQEPT-EQLSWAGNEMASILREGDPVQI------------ 366 (470)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------ 366 (470)
-+.|+....+++...|.-. +.++... -.......+.. ..+...+..............+
T Consensus 318 ~q~al~tv~rg~~~spsL~---~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~ 394 (660)
T COG5107 318 KQKALKTVERGIEMSPSLT---MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRIN 394 (660)
T ss_pred HHHHHHHHHhcccCCCchh---eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHh
Confidence 6666666666665555511 1110000 00000000000 0000000000000000000000
Q ss_pred CcHHHHHHHHHHHhccccHHHHHHHHHHHhcch--hhhhHhhHHH-HHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012143 367 EPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--EECAGAGESA-FLDQASAVNVAKECLLAALKADPKAAHIWANLAN 443 (470)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 443 (470)
....+|...-+.-.+..-.+.|...|.+.-+.. ..+++..-|. -+...|++.-|-..|+--+...|+++..-...-.
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 011233333334444445566666666544322 1222222221 2445677777777777777777777666555556
Q ss_pred HHHHcCChHHHHHHHHHHHHhhc
Q 012143 444 AYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 444 ~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+...++-..|...|+++++...
T Consensus 475 fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 475 FLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHH
Confidence 66777777777777777666553
No 255
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.63 E-value=0.0068 Score=54.07 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=116.7
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHcCC------------hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 012143 153 SKLKESMQSDTRQAVVWNTLGLILLKSGR------------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 220 (470)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (470)
..+++.++.+|.+.++|..+....-..-. .+.-+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999998876655432 456788999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--------------
Q 012143 221 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP-------------- 286 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-------------- 286 (470)
+.+++++..+|++...|..+....... ...-.+......|.+++..-.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~------------------~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~ 147 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSN------------------FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLP 147 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHH------------------hccCcHHHHHHHHHHHHHHHHHhhccccccccchh
Confidence 999999999999999998777666531 122345566666666554310
Q ss_pred ----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 287 ----KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 287 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
....+...+.......|..+.|+..++-.++.+
T Consensus 148 ~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 148 ELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 023456677788889999999999999999876
No 256
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.63 E-value=2.1e-05 Score=66.81 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=85.7
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..|.++.|++.|..++.++|.....+...+.++..++++..|+..+..+++++|+...-+-..|.....+|+|.+|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 012143 222 CFQDLILKDQN 232 (470)
Q Consensus 222 ~~~~~l~~~p~ 232 (470)
.+..+.+++-+
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 99999987643
No 257
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.60 E-value=0.00012 Score=40.01 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
++++.+|.++...|++++|+..|+++++.+|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356777777777777777777777777777754
No 258
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00019 Score=60.91 Aligned_cols=92 Identities=11% Similarity=0.179 Sum_probs=82.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 217 (470)
+++..+|..|+..|.+.+...-.+ +..|.+++.+....|+|..|+....+++.++|.+..+++.-+.|++.+.++.
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~ 170 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFA 170 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHH
Confidence 778899999999999999875544 4578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCC
Q 012143 218 QSAKCFQDLILKDQNH 233 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~ 233 (470)
+|....+..+.++...
T Consensus 171 ~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 171 EAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHhhhhhhhHHH
Confidence 9999999987765443
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.56 E-value=0.00019 Score=40.08 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+|.+||.+|...|++++|+++|++++.+-.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678888888888888888888888766543
No 260
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0017 Score=55.28 Aligned_cols=93 Identities=13% Similarity=0.013 Sum_probs=74.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCC----cchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDA----DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQ 86 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 86 (470)
+|+.+++..+++.|+ ..|.+.|.....+ +..|.+.+.+ ....|+|..++.-..+++..+|.+..+++.=+.|++
T Consensus 87 eGN~~fK~Kryk~A~-~~Yt~Glk~kc~D~dlnavLY~NRAAa-~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAV-ESYTEGLKKKCADPDLNAVLYTNRAAA-QLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HhHHHHHhhhHHHHH-HHHHHHHhhcCCCccHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence 678888888888888 8888888654333 3356677877 888888888888888888888888888888888888
Q ss_pred HhCChhHHHHHHHHHHHHH
Q 012143 87 RLGQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 87 ~~g~~~~A~~~~~~al~~~ 105 (470)
...++++|..+.+..+.++
T Consensus 165 eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHhhhhhhh
Confidence 8888888888888877653
No 261
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.55 E-value=0.0057 Score=55.14 Aligned_cols=147 Identities=13% Similarity=0.077 Sum_probs=114.8
Q ss_pred HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------------CCC------------Ch---HHHHHHH
Q 012143 157 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------DPN------------NC---DCIGNLG 207 (470)
Q Consensus 157 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------~~~------------~~---~~~~~la 207 (470)
..++.+|.+.+++..++.++..+|+...|.+.+++|+-. ++. |. .+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 335779999999999999999999999999999998632 111 11 2566777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
..+.+.|-+..|.+..+-.+.++|. ++-........+.- +.++++--++.++.......
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL--------------------rs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL--------------------RSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH--------------------hcCCHHHHHHHHHhHhhhhh
Confidence 8888999999999999999999999 77665555555542 67888877887777655211
Q ss_pred -----CCHHHHHHHHHHHHHcCCh---------------hHHHHHHHHHHhcCCCcc
Q 012143 287 -----KAAHIWANLANAYYLTGDH---------------RSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 287 -----~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~a~~~~p~~~ 323 (470)
.-|..-+.++.+++..++- +.|...+.+|+...|.-.
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 1346778888889999888 899999999999988743
No 262
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.54 E-value=0.0046 Score=48.16 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=69.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCC----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNN----------------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
.|......|+...++..+++++.+.... ..+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3555566677777888888877763211 235677888889999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
+|.+...+..+..++. ..|+...|+..|++...
T Consensus 92 dP~~E~~~~~lm~~~~---------------------~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALA---------------------AQGRRAEALRVYERYRR 124 (146)
T ss_dssp STT-HHHHHHHHHHHH---------------------HTT-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---------------------HCcCHHHHHHHHHHHHH
Confidence 9999999999988887 79999999999987754
No 263
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.54 E-value=0.00021 Score=39.35 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555566666666666666666555555
No 264
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.51 E-value=0.044 Score=48.54 Aligned_cols=155 Identities=17% Similarity=0.066 Sum_probs=93.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHHhhhccC
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEPNCM-STRYAVAVSRIKDAERSQE 342 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~~ 342 (470)
..+..+|..+|..+. ....+...+.+|.+|.. ..+..+|..+|+++....-... .+.+.++.....-.
T Consensus 90 ~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~----- 162 (292)
T COG0790 90 SRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL----- 162 (292)
T ss_pred cccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-----
Confidence 344666777666433 34456666667776665 3467777777777776543321 11222221111000
Q ss_pred chHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHH----hccHH
Q 012143 343 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVN 418 (470)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 418 (470)
.......+...|+..|.++.......+.+.+|.+|.. ..++.
T Consensus 163 ----------------------------------~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 163 ----------------------------------QALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred ----------------------------------hhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHH
Confidence 0000001224566666666666677777888877754 34789
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHHhhc
Q 012143 419 VAKECLLAALKADPKAAHIWANLANAYYLTG---------------DHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 419 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~ 466 (470)
+|..+|.++-+... ..+.+.++ ++...| +...|...+.++.....
T Consensus 209 ~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 209 KAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 99999999988866 88888888 666665 77788888887766543
No 265
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.51 E-value=0.12 Score=50.97 Aligned_cols=297 Identities=15% Similarity=0.056 Sum_probs=171.2
Q ss_pred HHHHHHHHHhhhcCcc----chHHHHHHHHHHH-HcCChHHHHHHHHHHhhcCCC--Ch----HHHHHHHHHHHHcCCHH
Q 012143 149 EEILSKLKESMQSDTR----QAVVWNTLGLILL-KSGRLQSSISVLSSLLAVDPN--NC----DCIGNLGIAYFQSGDME 217 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~la~~~~~~g~~~ 217 (470)
..|+.+++-+++..+- .+.+.+.+|.++. ...+++.|..++.+++.+... .. .+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 5678888887743221 2457888999988 789999999999999887643 22 24567788888888777
Q ss_pred HHHHHHHHHHhhCCCC-hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC--CCCHHHH--
Q 012143 218 QSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIW-- 292 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~-- 292 (470)
|...+++.++..... ...|...-..+. .......+++..|++.++...... +.++.+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~----------------~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLK----------------IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHH----------------HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 999999998765441 112222222211 111112379999999999988765 3444332
Q ss_pred --HHHHHHHHHcCChhHHHHHHHHHHhc------CCCccc----HHHHHHH--HHHH--HhhhccCchHHhhhhHHHHHH
Q 012143 293 --ANLANAYYLTGDHRSSGKCLEKAAKL------EPNCMS----TRYAVAV--SRIK--DAERSQEPTEQLSWAGNEMAS 356 (470)
Q Consensus 293 --~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~----~~~~l~~--~~~~--~~~~~~~~~~~~~~~~~~~~~ 356 (470)
...+.++...+..+++++..+++... +|+... ++..+.. ..+. +..........+...+.....
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~ 260 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK 260 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 33466677778888888888877432 222211 1111110 1111 101111112222222222222
Q ss_pred Hh--hc---CCCC--C-----------C--------C--cHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh-------
Q 012143 357 IL--RE---GDPV--Q-----------I--------E--PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE------- 401 (470)
Q Consensus 357 ~~--~~---~~~~--~-----------~--------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------- 401 (470)
.. .. ...+ . + . ...+|..-|......+..++|.+.+.+++.....
T Consensus 261 ~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~ 340 (608)
T PF10345_consen 261 SPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPS 340 (608)
T ss_pred CccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCC
Confidence 21 00 0000 0 0 0 0112333344455555555666555553321000
Q ss_pred ---------------------hhHhhHHHHHHHhccHHHHHHHHHHHHhcC---CC------cHHHHHHHHHHHHHcCCh
Q 012143 402 ---------------------CAGAGESAFLDQASAVNVAKECLLAALKAD---PK------AAHIWANLANAYYLTGDH 451 (470)
Q Consensus 402 ---------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~ 451 (470)
...+..+.+.+-.+++..|....+.+.... |. .+.+++..|..+...|+.
T Consensus 341 ~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l 420 (608)
T PF10345_consen 341 APSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDL 420 (608)
T ss_pred CCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCH
Confidence 123366667778899999999888777542 22 377889999999999999
Q ss_pred HHHHHHHHHHH
Q 012143 452 RSSGKCLEKVL 462 (470)
Q Consensus 452 ~~A~~~~~~al 462 (470)
+.|..+|.+..
T Consensus 421 ~~A~~~y~~~~ 431 (608)
T PF10345_consen 421 EAALYQYQKPR 431 (608)
T ss_pred HHHHHHHhhhH
Confidence 99999998544
No 266
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.49 E-value=0.00021 Score=39.41 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 290 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 290 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56888888898999999999999988888874
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.48 E-value=0.093 Score=49.06 Aligned_cols=300 Identities=13% Similarity=0.027 Sum_probs=164.7
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHH-HHHHcCCHHHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI-AYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~ 224 (470)
...+.+...|...+...|.....|...|..-.+.|..+.+.++|++++.--|-+.+.|..+-. +-...|+.+.-...|+
T Consensus 59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 334555666666677777777777777777777777777777777777777766666654433 2334566666666777
Q ss_pred HHHhhCCCCh---HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012143 225 DLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 225 ~~l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 301 (470)
++......+. ..|..+...- ...+++..-..+|++.++.--.....++..=.-+..
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~e---------------------n~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFE---------------------NGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHH---------------------hccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHh
Confidence 7766544332 2232222222 246677777777777776433222222222211222
Q ss_pred c------CChhHHHHHHHHHHhc--CCCcccHH--HHHHHHH--------------HHHhhhccCchHHhhhhHHHHHHH
Q 012143 302 T------GDHRSSGKCLEKAAKL--EPNCMSTR--YAVAVSR--------------IKDAERSQEPTEQLSWAGNEMASI 357 (470)
Q Consensus 302 ~------g~~~~A~~~~~~a~~~--~p~~~~~~--~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 357 (470)
. -..+++...-...... .+...... ...+... +.+........-+...........
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 1222332222222211 00000000 0000000 000000000000000000000000
Q ss_pred hhc--------CCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch--hhhhHhhHHHHHHHhccHHHHHHHHHHH
Q 012143 358 LRE--------GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAA 427 (470)
Q Consensus 358 ~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a 427 (470)
... ..+..+.....|..........|+++...-.+.+.+-+. ....|+..+......|+.+-|-..+..+
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 111 112222344567777777788899999999888877644 4477888888888888888888888888
Q ss_pred Hhc-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 428 LKA-DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 428 l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+. .|..+.+...-+.+-...|++..|...+++..+-+|
T Consensus 358 ~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred hhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 775 466677888888888888999999999998887764
No 268
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.44 E-value=0.052 Score=48.50 Aligned_cols=166 Identities=16% Similarity=0.002 Sum_probs=115.7
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCcccc
Q 012143 62 TGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDK 141 (470)
Q Consensus 62 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (470)
..|.+.++.+|.+..+|..+....-..-...... +.-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~----~~~--------------------------------------- 42 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS----KAE--------------------------------------- 42 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc----hhh---------------------------------------
Confidence 4567778889999999988877665433222211 000
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH---cCCHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ---SGDMEQ 218 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~---~g~~~~ 218 (470)
...-.+.-+.++++|++.+|++...+..+-.+.....+.++..+-+++++..+|+++..|...-..... .-.++.
T Consensus 43 --~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 43 --RRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHH
Confidence 001126778899999999999999998888888888899999999999999999999888766554433 345778
Q ss_pred HHHHHHHHHhhCCC-----------ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 219 SAKCFQDLILKDQN-----------HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 219 A~~~~~~~l~~~p~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
....|.+++..-.. .+..-..+..++. .......+.|..+.|+..++-.++.+=
T Consensus 121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~--------------r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL--------------RLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH--------------HHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 88888888754211 1112222222222 245566689999999999999998753
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.44 E-value=0.14 Score=50.23 Aligned_cols=110 Identities=10% Similarity=-0.031 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
+|......++......++.+|.....++...-|. ....-..++...- -.|.+....|++++|++
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~a--------------L~a~val~~~~~e~a~~ 479 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQA--------------LRAQVALNRGDPEEAED 479 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHH--------------HHHHHHHhcCCHHHHHH
Confidence 4667778888899999999999999888765433 2211111111110 12445557999999999
Q ss_pred HHHHHHhcCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 277 CLLAALKADPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 277 ~~~~~~~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
..+.++..-|. ...+...+|.+..-.|++++|..+...+.+.....
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 99999988776 35567888999999999999999999988875443
No 270
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.43 E-value=0.084 Score=47.54 Aligned_cols=108 Identities=9% Similarity=0.012 Sum_probs=77.1
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc---------------------------ccccc
Q 012143 207 GIAYFQSGD-MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------------------------GAGAN 258 (470)
Q Consensus 207 a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~---------------------------~~~~~ 258 (470)
|.-+.+.|. -++|+..++.+++..|.+.......-...-....++++ +....
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 334445666 88899999999998888775433222211111111111 12233
Q ss_pred hhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 259 TGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+.-|..+...|+|.++.-+-.=..++.| ++.++..+|.+.....+|++|..++...
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4457778899999999999988999999 7999999999999999999999998754
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.41 E-value=0.0004 Score=38.75 Aligned_cols=31 Identities=32% Similarity=0.374 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 77 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
++..||.+|...|++++|+++|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4788999999999999999999998876543
No 272
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.31 Score=53.25 Aligned_cols=104 Identities=12% Similarity=0.033 Sum_probs=81.6
Q ss_pred CCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC-CC---------
Q 012143 364 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD-PK--------- 433 (470)
Q Consensus 364 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~--------- 433 (470)
........|...+.+.+..|.++.|....-.+.....+.+....|..+...|+-..|+..+++.++.+ |+
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 34456789999999999999999999999998888888999999999999999999999999999653 22
Q ss_pred -c------HHHHHHHHHHHHHcCCh--HHHHHHHHHHHHhhcc
Q 012143 434 -A------AHIWANLANAYYLTGDH--RSSGKCLEKVLMVYCS 467 (470)
Q Consensus 434 -~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~ 467 (470)
. ..+...++......|+. ..-+++|..+.++++.
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 1 12344455555556653 3456788888888873
No 273
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.37 E-value=0.1 Score=47.02 Aligned_cols=140 Identities=11% Similarity=0.045 Sum_probs=84.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhh---hcccch-hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQS---GLGTSS-SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQ 86 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~---~~~~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 86 (470)
.|-.+.+.++..++- ..|.+......+++...- ..|.+. ....++++.....+...-+..|+.+......|...+
T Consensus 12 Qgf~Lqkq~~~~esE-kifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 12 QGFILQKQKKFQESE-KIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAY 90 (549)
T ss_pred hhHHHHHHhhhhHHH-HHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456677888888876 666666554333322111 223331 456777888888887777788999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHH-HhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 87 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ-IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 87 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
+.+++.+|++.+..--+.-..........++..... .++ +......++..|++.++..++++.+.
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l---------~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFL---------DEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHH---------HHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 999999999988776554211111111111110000 000 00011124577888899888888765
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.36 E-value=0.086 Score=46.10 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=102.6
Q ss_pred cCcccHHHHHHHHHHhhhcC----ccc----hHHHHHHHHHHHHcC-ChHHHHHHHHHHhhc----CC---CC-------
Q 012143 143 LEPEELEEILSKLKESMQSD----TRQ----AVVWNTLGLILLKSG-RLQSSISVLSSLLAV----DP---NN------- 199 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~----p~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~----~~---~~------- 199 (470)
.+.|+++.|..++.++-... |+. ...+++.|......+ +++.|..+++++.++ .+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999999986543 433 346788899999999 999999999999887 22 11
Q ss_pred hHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDME---QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
..++..++.+|...+.++ +|....+.+-...|+.+..+...-.++. +.++.+.+.+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~---------------------~~~~~~~~~~ 142 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL---------------------KSFDEEEYEE 142 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh---------------------ccCChhHHHH
Confidence 236788899998888765 4455555555566777766544444443 4788899999
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHH-HHHcCChhHHHHHHHHHHhc
Q 012143 277 CLLAALKADPK-AAHIWANLANA-YYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 277 ~~~~~~~~~p~-~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~ 318 (470)
.+.+++..-+- ....-..+..+ .........|...+...+..
T Consensus 143 ~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 143 ILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999886542 12222222222 11223445677777766643
No 275
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.36 E-value=0.043 Score=49.58 Aligned_cols=169 Identities=16% Similarity=0.097 Sum_probs=107.2
Q ss_pred HHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcc
Q 012143 67 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 146 (470)
Q Consensus 67 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (470)
.+..+|-+.+++..++.++..+|+...|.++.++|+-..... ..+.+.. ...-...|..
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~----~~~~F~~--------~~~~~~~g~~--------- 90 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA----FHPSFSP--------FRSNLTSGNC--------- 90 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH----HHHHhhh--------hhcccccCcc---------
Confidence 345699999999999999999999999999999998653110 0011100 0000000110
Q ss_pred cHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-ChHHHHHHH-HHHHHcCCHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-NCDCIGNLG-IAYFQSGDMEQSAK 221 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la-~~~~~~g~~~~A~~ 221 (470)
+.--..+.| -.+++.....+.+.|-+..|.++.+-.+.++|. ++-...... ....+.++++--+.
T Consensus 91 ----------rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~ 160 (360)
T PF04910_consen 91 ----------RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLID 160 (360)
T ss_pred ----------ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHH
Confidence 000011222 346667788889999999999999999999998 765444444 44467788877777
Q ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH---------------HHHHHHHHHH
Q 012143 222 CFQDLILKDQN-----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV---------------NVAKECLLAA 281 (470)
Q Consensus 222 ~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~A~~~~~~~ 281 (470)
.++........ -|...+..+.++. ..++. +.|...+.+|
T Consensus 161 ~~~~~~~~~~~~~~~~lPn~a~S~aLA~~---------------------~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 161 FSESPLAKCYRNWLSLLPNFAFSIALAYF---------------------RLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred HHHhHhhhhhhhhhhhCccHHHHHHHHHH---------------------HhcCccccccccccccccchhHHHHHHHHH
Confidence 77765542111 1222333333333 34444 8999999999
Q ss_pred HhcCCC
Q 012143 282 LKADPK 287 (470)
Q Consensus 282 ~~~~p~ 287 (470)
+...|.
T Consensus 220 i~~fP~ 225 (360)
T PF04910_consen 220 ILRFPW 225 (360)
T ss_pred HHHhHH
Confidence 998775
No 276
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.066 Score=44.49 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ-SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
+.+-+.++..++..+|.+..+|...-.+....|++. .-++..+.++..+.++..+|...-.+...-+.++.-+.+..+.
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467788889999999999999999999999999888 8889999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC
Q 012143 227 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG 303 (470)
Q Consensus 227 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g 303 (470)
++.+-.+..+|...-.+..... |. ...-..+.-+.+..+.|...|++..+|..|.-++.. .|
T Consensus 174 le~Di~NNSAWN~Ryfvi~~~~-------------~~--~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 174 LEEDIRNNSAWNQRYFVITNTK-------------GV--ISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHhhhccchhheeeEEEEecc-------------CC--ccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 9988877777764322221100 00 001224556778888999999999999999888876 44
No 277
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.35 E-value=0.00027 Score=60.35 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=76.2
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccc
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 252 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 252 (470)
+.-.+..|.++.|++.|..++.++|.....+...+.++..++++..|+..+..++.++|+....+-..+....
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r------- 193 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER------- 193 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH-------
Confidence 3445567888999999999999999888888889999999999999999999999888888776666665555
Q ss_pred cccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 253 AGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.+|++++|...+..+.+++-+
T Consensus 194 --------------llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 --------------LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred --------------HhhchHHHHHHHHHHHhcccc
Confidence 588888888888888877544
No 278
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.30 E-value=0.044 Score=48.49 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=114.8
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHcC-----
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSG----- 214 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g----- 214 (470)
..+..+|...|+.+. ...++.+.+.+|.+|.. ..++.+|..+|+++.+..-.. ..+...+|..|..-.
T Consensus 90 ~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 90 SRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 456789999999554 45667889999999987 459999999999998875433 344888888887642
Q ss_pred --CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 012143 215 --DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292 (470)
Q Consensus 215 --~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 292 (470)
+...|...|.++-... ++.+...+|.+|..- ..-..++.+|..+|.++-+... ....
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G-----------------~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG-----------------LGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC-----------------CCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 2337888888887765 777888888777631 1135689999999999998877 8888
Q ss_pred HHHHHHHHHcC---------------ChhHHHHHHHHHHhcCCC
Q 012143 293 ANLANAYYLTG---------------DHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 293 ~~la~~~~~~g---------------~~~~A~~~~~~a~~~~p~ 321 (470)
+.++ ++...| +...|...+..+....+.
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 8888 777666 566666666666655544
No 279
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.26 Score=53.82 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=154.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
...-..+...|++..|..+|++++..+|+....+...-......|.++..+...+-.....++...-++.++.-..
T Consensus 1453 ~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaa---- 1528 (2382)
T KOG0890|consen 1453 YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAA---- 1528 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHH----
Confidence 3445566778999999999999999999988777777777788888998888887777666666666666654332
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH--HHHHHH--hcCCCcccH
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK--CLEKAA--KLEPNCMST 325 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~--~~~p~~~~~ 325 (470)
.+.++++.-..+.. ..+-++..+.. +|.+.....+-+.-.. ..+.+. .+.|-....
T Consensus 1529 ----------------W~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s 1588 (2382)
T KOG0890|consen 1529 ----------------WRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACS 1588 (2382)
T ss_pred ----------------hhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhh
Confidence 25666766655544 11222222221 5666655544332111 111111 111110000
Q ss_pred ---HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCC--CCCcHHHHHHHHHHHhccccHHHHHHHHHHHh----
Q 012143 326 ---RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV--QIEPPIAWAGFAAVQKTHHEVAAAFETEENEL---- 396 (470)
Q Consensus 326 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---- 396 (470)
.+..+...+- ..... .........+...... ...+..-|.+....-....+..+-+-.+++.+
T Consensus 1589 ~~~Sy~~~Y~~~~-------kLH~l-~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~ 1660 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILM-------KLHLL-LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLR 1660 (2382)
T ss_pred ccchHHHHHHHHH-------HHHHH-HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHh
Confidence 0000000000 00000 0001111111111111 11222445555444444444555555555422
Q ss_pred -----cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 397 -----SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 397 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+..-.+.|...|.+-...|+++.|..+.-+|.+.. -+.+....|..+...|+...|+..+++.+++.-.
T Consensus 1661 ~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1661 MRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred ccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 23344779999999999999999999999998876 5788999999999999999999999999987644
No 280
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.054 Score=53.68 Aligned_cols=225 Identities=12% Similarity=0.014 Sum_probs=142.8
Q ss_pred CCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhh
Q 012143 38 DADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPEL 117 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 117 (470)
+.+..|..+|.. ....|...+|++.|-+ .++|..+.....+..+.|.|++-+.++.-+.+....+. .
T Consensus 1102 n~p~vWsqlakA-QL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-------i 1168 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKA-QLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-------I 1168 (1666)
T ss_pred CChHHHHHHHHH-HHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-------c
Confidence 455667777777 7777777777777754 35666677777777777777777777766665432211 0
Q ss_pred HHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 012143 118 LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP 197 (470)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 197 (470)
- ..+..+| .+.++..+-... + ..|+.+. .-..|.-++..|.|+.|.-+|..
T Consensus 1169 d------~eLi~Ay-----------Akt~rl~elE~f----i-~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~------ 1219 (1666)
T KOG0985|consen 1169 D------SELIFAY-----------AKTNRLTELEEF----I-AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN------ 1219 (1666)
T ss_pred h------HHHHHHH-----------HHhchHHHHHHH----h-cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH------
Confidence 0 0011111 112222222221 1 2444443 34678888888888888877754
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc---------ccccchhhhhHHHhc
Q 012143 198 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------GAGANTGEGACLDQA 268 (470)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 268 (470)
..-|..++..+..+|+|+.|...-+++ ++...|...+..........++ .++..-.+-..|...
T Consensus 1220 --vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~r 1292 (1666)
T KOG0985|consen 1220 --VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDR 1292 (1666)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhc
Confidence 456788999999999999999888876 3455666666555543222222 234444566788899
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 269 SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 269 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
|-+++-+..++.++.+..-+...+..||.+|.+- ++++-.+++
T Consensus 1293 GyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 9999999999999988877777888888777653 333333333
No 281
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.035 Score=43.97 Aligned_cols=120 Identities=15% Similarity=0.123 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchh
Q 012143 184 SSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 260 (470)
Q Consensus 184 ~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (470)
+.....++....+|.+. -+-..++..+...|++++|+..++.++... .+.. +..++...
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~-lk~l~~lR---------------- 131 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT-KDEN-LKALAALR---------------- 131 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHH-HHHHHHHH----------------
Confidence 44444555555555443 245677888999999999999999998643 2221 22222221
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
++.+..+.|.+++|+..+....... -.+..-...|.++...|+-++|+..|++++...++.
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3455568999999999887654311 124446678999999999999999999999987553
No 282
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.20 E-value=0.18 Score=46.54 Aligned_cols=407 Identities=14% Similarity=0.095 Sum_probs=232.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHH-HHHHHHHHhCChhHHHHHH
Q 012143 20 KCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHF-LLGLMYQRLGQPLKAVSSY 98 (470)
Q Consensus 20 ~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~ 98 (470)
.+++.- ..+++.+...|.++..|...... .+...+|+..+++|.+++...=+ .+.|. .+-.+....|+...+....
T Consensus 34 ~~~~~R-~~YEq~~~~FP~s~r~W~~yi~~-El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 34 PIDKVR-ETYEQLVNVFPSSPRAWKLYIER-ELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred CHHHHH-HHHHHHhccCCCCcHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHHHHH
Confidence 345555 88999999999999999998888 89999999999999999865333 44443 3455555566666655555
Q ss_pred HHHHHHHhhhhc-cc----chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH-HHH--
Q 012143 99 EKAEEILLRCEA-DI----ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV-VWN-- 170 (470)
Q Consensus 99 ~~al~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~-- 170 (470)
-+|.+..-..-. .+ ...++......+.. +..+-.+.+++.-...|++++..--.+.+ .|.
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea------------~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY 178 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEA------------VGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDY 178 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccc------------cccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 555544221110 00 01111111111111 12245566888889999999875333321 111
Q ss_pred -----------HHHHHHHHcCChHHHHHHHHHHhhc-------CCC----C-------hHHHHHHHHHHHHcC------C
Q 012143 171 -----------TLGLILLKSGRLQSSISVLSSLLAV-------DPN----N-------CDCIGNLGIAYFQSG------D 215 (470)
Q Consensus 171 -----------~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~----~-------~~~~~~la~~~~~~g------~ 215 (470)
..-.+-.....|..|...+++...+ +|. . .+.|.++...-...+ .
T Consensus 179 ~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~ 258 (656)
T KOG1914|consen 179 EAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGT 258 (656)
T ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 1111223345577777777765443 221 1 112333332221111 1
Q ss_pred --HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC-------HHHHHHHHHHHHhcCC
Q 012143 216 --MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-------VNVAKECLLAALKADP 286 (470)
Q Consensus 216 --~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~~~~~p 286 (470)
...-.-.|++++..-+-+++.|+..+..+.. .+.++...|+ -+++..+|++++..--
T Consensus 259 ~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~--------------~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 259 MLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIE--------------ISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------hhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 1223345777887778888888877776653 2333344444 5677888888876433
Q ss_pred C-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 287 K-AAHIWANLANAYYLTGD---HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 287 ~-~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
. +...++.++..-...-+ ++.-...+.+.+.+...++...+..-+..+... ...+..+..+....
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~-----------eGlkaaR~iF~kaR 393 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA-----------EGLKAARKIFKKAR 393 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh-----------hhHHHHHHHHHHHh
Confidence 2 33344444433322222 566667777777665444432222111111111 11111222222221
Q ss_pred CCCCCcHHHHHHHHH-HHhccccHHHHHHHHHHHhcchhhhhHh--hHHHHHHHhccHHHHHHHHHHHHhc--CCC-cHH
Q 012143 363 PVQIEPPIAWAGFAA-VQKTHHEVAAAFETEENELSKMEECAGA--GESAFLDQASAVNVAKECLLAALKA--DPK-AAH 436 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~al~~--~p~-~~~ 436 (470)
........++..-+. -|..+++.+-|...|...+........+ .....+...++-..|...|++++.. .|+ ...
T Consensus 394 ~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~ 473 (656)
T KOG1914|consen 394 EDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKE 473 (656)
T ss_pred hccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHH
Confidence 111111233333333 3566789999999999988855554433 4445677899999999999999987 443 357
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+|..+-..-..-|+....++.=++-...++
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 888887777888999988888877777766
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.18 E-value=0.00077 Score=36.70 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555554
No 284
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.10 E-value=0.0088 Score=41.56 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 150 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
..+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++..+|.-+.-...|++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 34667888889999999999999999999999999999999999998765 45556666666666655444444443
No 285
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.09 E-value=0.0019 Score=54.37 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=51.1
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
+.|+.++|..+|+-++...|++++++..+|......++.-+|-.+|-+++.++|.+..++.+.+..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 556678888888888888888888888888887777888888888888888888877777666543
No 286
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.04 E-value=0.0041 Score=57.27 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=91.0
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchH-HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 220 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (470)
....|+...|+.++..++...|.... ...+++.+....|-...|-..+.+++.+....+-.++.+|..+..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34568889999999999999886543 57889999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHH
Q 012143 221 KCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
+.|+.+++.+|+++.....+-.+.
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999998766655443
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.11 Score=40.22 Aligned_cols=159 Identities=11% Similarity=0.104 Sum_probs=97.8
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc
Q 012143 82 GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS 161 (470)
Q Consensus 82 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 161 (470)
|.-|+..+.-.++-..|..++++. +.+..++|+..|...-+.
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA--------------------------------------~~~k~d~Alaaf~~lekt 87 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLA--------------------------------------QENKTDDALAAFTDLEKT 87 (221)
T ss_pred eeehhcccccccchHHHHHHHHHH--------------------------------------HcCCchHHHHHHHHHHhc
Confidence 455667777777778888887763 233447777777766554
Q ss_pred Cccc--hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCh
Q 012143 162 DTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQSAKCFQDLI-LKDQNHP 234 (470)
Q Consensus 162 ~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~ 234 (470)
.-.. ..+.+..|.+....|+-..|+..|..+-...|.- ..+...-+.++...|-|++-....+..- ..+|-..
T Consensus 88 g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~ 167 (221)
T COG4649 88 GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRH 167 (221)
T ss_pred CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHH
Confidence 4322 3356667888888888888888888876543321 1244555666777788877666555432 2233334
Q ss_pred HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012143 235 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300 (470)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 300 (470)
.+...||..-+ +.|++.+|.++|.+... +...|....+.+.+..
T Consensus 168 sArEALglAa~---------------------kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 168 SAREALGLAAY---------------------KAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHhHHHH---------------------hccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 44445554444 67777778777777665 4444555555555443
No 288
>PRK10941 hypothetical protein; Provisional
Probab=96.96 E-value=0.011 Score=50.67 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999999999999999999999999876544433
No 289
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.94 E-value=0.47 Score=46.84 Aligned_cols=267 Identities=15% Similarity=0.084 Sum_probs=152.3
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCC--Ccc----hhhhcccchhhhhcChhhHHHHHHHHHHhCCC---Chh-HHHHH--H
Q 012143 15 INKLGKCRSRISSKMDSALEFGVD--ADG----DQSGLGTSSSSREEKVSSLKTGLVHVARKMPK---NAH-AHFLL--G 82 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~--~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~-~~~~l--~ 82 (470)
+.+..+.+.|- +.+++++.+... ... ..+.++.+ +.+.+... |...+++.++.... .+. ..+.+ .
T Consensus 70 ~~eT~n~~~Ae-~~L~k~~~l~~~~~~~d~k~~~~~ll~~i-~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~ 146 (608)
T PF10345_consen 70 LEETENLDLAE-TYLEKAILLCERHRLTDLKFRCQFLLARI-YFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKI 146 (608)
T ss_pred HHHcCCHHHHH-HHHHHHHHhccccchHHHHHHHHHHHHHH-HHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 44677888888 889998766533 221 23344555 55555555 99999998875443 222 22222 3
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc-
Q 012143 83 LMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS- 161 (470)
Q Consensus 83 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 161 (470)
......+++..|++.++......-.. ..+...-. +....+.+. +..+..+++++.++++...
T Consensus 147 ~l~~~~~d~~~Al~~L~~~~~~a~~~----~d~~~~v~--~~l~~~~l~-----------l~~~~~~d~~~~l~~~~~~~ 209 (608)
T PF10345_consen 147 QLALQHKDYNAALENLQSIAQLANQR----GDPAVFVL--ASLSEALLH-----------LRRGSPDDVLELLQRAIAQA 209 (608)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhhc----CCHHHHHH--HHHHHHHHH-----------hcCCCchhHHHHHHHHHHHH
Confidence 33333479999999999998864211 11222211 111222222 2334446666666655321
Q ss_pred -----C----ccchHHHHHHHH--HHHHcCChHHHHHHHHHHhh---c---CC-------C---------------C-h-
Q 012143 162 -----D----TRQAVVWNTLGL--ILLKSGRLQSSISVLSSLLA---V---DP-------N---------------N-C- 200 (470)
Q Consensus 162 -----~----p~~~~~~~~l~~--~~~~~~~~~~A~~~~~~a~~---~---~~-------~---------------~-~- 200 (470)
+ +....++..+-. ++...|+++.+...+++.-. . .| + . +
T Consensus 210 ~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~ 289 (608)
T PF10345_consen 210 RSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPL 289 (608)
T ss_pred hhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCcee
Confidence 1 122334444333 45667777777666554322 1 11 0 0 0
Q ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCh----------HHHHHHHHHHHhhhccc
Q 012143 201 ------------DCIGNLGIAYFQSGDMEQSAKCFQDLILKD-------QNHP----------AALINYAALLLCKYGSV 251 (470)
Q Consensus 201 ------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~----------~~~~~l~~~~~~~~~~~ 251 (470)
-++..-|.+....|..++|.++++++++.- |..+ ..|......+
T Consensus 290 ~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~------- 362 (608)
T PF10345_consen 290 VFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY------- 362 (608)
T ss_pred EEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH-------
Confidence 134455666777788878988888887531 1111 1111111111
Q ss_pred ccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHcCChhHHHHHHH
Q 012143 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKAD---PK------AAHIWANLANAYYLTGDHRSSGKCLE 313 (470)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 313 (470)
.....+-+..-.+++..|......+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 363 -----~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 363 -----LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred -----HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 12234556667899999998888776542 22 47788999999999999999999998
No 290
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.94 E-value=0.19 Score=42.10 Aligned_cols=215 Identities=12% Similarity=0.172 Sum_probs=132.1
Q ss_pred hhcChhhHHHHHHHHHHhCCCChh----HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc----cchhhhHHHHHHh
Q 012143 53 REEKVSSLKTGLVHVARKMPKNAH----AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEAD----IARPELLSLVQIH 124 (470)
Q Consensus 53 ~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~~~ 124 (470)
.....++|...|++++++.|...+ ++-....+++.+|++++-+..|.+.+..-...-.. ......+.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt- 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST- 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh-
Confidence 455889999999999999987654 67778899999999999999999988642211000 000111111111
Q ss_pred hhccccccccCCCccccccCcccHHHHHHHHHHhhhc--CccchHHH----HHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 125 HAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS--DTRQAVVW----NTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
..+.+--...|+..+.. +..+...| ..+|.+|+..+.|.+-.+.+++.-.....
T Consensus 118 --------------------S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 118 --------------------SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred --------------------hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 11112222223222211 12233333 35899999999998888877776543211
Q ss_pred ------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 199 ------------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 199 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
-.++|..-...|..+.+-.+-...|++++.+...-|.. ..+|.+..+. |..+.
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECG--------------GKMHl 242 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECG--------------GKMHL 242 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcC--------------Ccccc
Confidence 13455566678888888888888999999876544332 2345554432 45666
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-----CHH--HHHHHHHHHHHcC
Q 012143 267 QASAVNVAKECLLAALKADPK-----AAH--IWANLANAYYLTG 303 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~-----~~~--~~~~la~~~~~~g 303 (470)
+.|++++|-.-|-.+++.... ... -|.-+|..+.+.|
T Consensus 243 reg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 243 REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred ccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 889999999888888876332 222 2445566665554
No 291
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.88 E-value=0.0069 Score=36.90 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
+.++.+|..+.++|+|++|..+.+.+++.+|++..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 356677777777777777777777777777777766443
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.32 Score=46.48 Aligned_cols=241 Identities=12% Similarity=0.027 Sum_probs=133.1
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
++.+| ++..|..++......-.++.|...|-++-....-. ..--...+.+-.--|++++|.+.|-.+-+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr-- 762 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR-- 762 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch--
Confidence 33344 47888888888777777777777776643321100 00012334444556888888887754422
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChhHH
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A 308 (470)
. .++.-+. .+.|++-...+.++..-.-+. ..-.++.++|..+..+..|++|
T Consensus 763 -r------DLAielr--------------------~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 763 -R------DLAIELR--------------------KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred -h------hhhHHHH--------------------HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1121111 256666666665554322111 1357899999999999999999
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHH
Q 012143 309 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 388 (470)
Q Consensus 309 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 388 (470)
.++|...-... +....++.+.. +..+...... .|++....-.+|..+...|.-++|
T Consensus 816 ~~yY~~~~~~e-~~~ecly~le~-------------------f~~LE~la~~----Lpe~s~llp~~a~mf~svGMC~qA 871 (1189)
T KOG2041|consen 816 AKYYSYCGDTE-NQIECLYRLEL-------------------FGELEVLART----LPEDSELLPVMADMFTSVGMCDQA 871 (1189)
T ss_pred HHHHHhccchH-hHHHHHHHHHh-------------------hhhHHHHHHh----cCcccchHHHHHHHHHhhchHHHH
Confidence 99998764322 11222222211 0111111111 123445666788888888999999
Q ss_pred HHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 389 FETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
.+.|.+.-.|... . .....++++.+|++.-++- .-|.-.......+--+...++.-+|++..+++
T Consensus 872 V~a~Lr~s~pkaA--v----~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 872 VEAYLRRSLPKAA--V----HTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhccCcHHH--H----HHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 9888764443221 1 1344566677777655432 11322233333334445666777777776666
No 293
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.83 E-value=0.0048 Score=52.09 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=65.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
..+.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+....
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3445566789999999999999999999999999999999999999999999999999999999988766543
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.81 E-value=0.015 Score=44.78 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=65.4
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 217 (470)
+..++.+++...+..+-...|..+..-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+..+|+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 355677888888888888899999999999999999999999999999988888888888889999998888754
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.73 E-value=0.0085 Score=36.50 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
+.++.+|..+.+.|+|++|..+.+.+++.+|++..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4678899999999999999999999999999998876555443
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.64 Score=44.58 Aligned_cols=195 Identities=13% Similarity=0.048 Sum_probs=119.8
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhh---hccccccc
Q 012143 57 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH---AQCLLPES 133 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 133 (470)
+++|++..+ .+| ++..|..++......-.++-|...|-+.-... . ..-...+..++. ..+.+
T Consensus 679 ledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-G------ik~vkrl~~i~s~~~q~aei--- 743 (1189)
T KOG2041|consen 679 LEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-G------IKLVKRLRTIHSKEQQRAEI--- 743 (1189)
T ss_pred hHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-c------hhHHHHhhhhhhHHHHhHhH---
Confidence 444544443 344 58899999999888888888888877653310 0 000000000000 00000
Q ss_pred cCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--CChHHHHHHHHHHH
Q 012143 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYF 211 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~ 211 (470)
----|+|++|.+.|-.+-+.+ .-..++...|+|-.-.+.++..-.-+. ....++..+|..+.
T Consensus 744 --------~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa 807 (1189)
T KOG2041|consen 744 --------SAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFA 807 (1189)
T ss_pred --------hhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHH
Confidence 011267889988886553322 123456677888777777765322211 22468999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 212 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
.+..|++|.++|.+.-.. .++..++. ...++++ ++.....-|++...
T Consensus 808 ~~~~We~A~~yY~~~~~~--------e~~~ecly---------------------~le~f~~----LE~la~~Lpe~s~l 854 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGDT--------ENQIECLY---------------------RLELFGE----LEVLARTLPEDSEL 854 (1189)
T ss_pred HHHHHHHHHHHHHhccch--------HhHHHHHH---------------------HHHhhhh----HHHHHHhcCcccch
Confidence 999999999999886432 12233333 3444444 33344456888889
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+-.+|..+...|.-++|.+.|-+.
T Consensus 855 lp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 855 LPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHHHhhchHHHHHHHHHhc
Confidence 999999999999999999988653
No 297
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.67 E-value=0.52 Score=43.32 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKCFQDLI 227 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l 227 (470)
..-...|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+.-+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 5667889999999999999999998888888889999999999999999999999999988877776 999999999999
Q ss_pred hhCCCChHHHHHHHHH
Q 012143 228 LKDQNHPAALINYAAL 243 (470)
Q Consensus 228 ~~~p~~~~~~~~l~~~ 243 (470)
+.+|+++..|...-..
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999987655444
No 298
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.63 E-value=0.057 Score=38.49 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 273 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 273 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.++++|.++..+.|..+..++.+|.-+-....|+++..-.++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4777888888888888888888887766666777777777777654
No 299
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.55 E-value=0.026 Score=40.36 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=63.9
Q ss_pred HHHHHHHH--HHHHcCChHHHHHHHHHHhhcCCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 012143 167 VVWNTLGL--ILLKSGRLQSSISVLSSLLAVDPNN------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILK--- 229 (470)
Q Consensus 167 ~~~~~l~~--~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--- 229 (470)
.+|..|+. -...-|-|++|...++++.+....- .-++..|+..+..+|+|++++..-.+++..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 34444443 3456689999999999998864332 347788999999999999999888888743
Q ss_pred ----CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 230 ----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 230 ----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
+.+....|. +.++. .+..+...|+.++|+..|+.+-+
T Consensus 88 RGEL~qdeGklWI--aaVfs---------------ra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 88 RGELHQDEGKLWI--AAVFS---------------RAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H--TTSTHHHHHH--HHHHH---------------HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccccccchhHH--HHHHH---------------HHHHHHhcCChHHHHHHHHHHHH
Confidence 333333332 22221 34555577888888887777654
No 300
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.53 E-value=0.05 Score=37.83 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHH
Q 012143 185 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH--PAALINYAALL 244 (470)
Q Consensus 185 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~ 244 (470)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+..++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 4667889999999999999999999999999999999999999988765 44444444333
No 301
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.51 E-value=0.0054 Score=32.86 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDP 197 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 197 (470)
++..+|.++...|++++|+..++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555555444
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.48 E-value=0.095 Score=40.43 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+..+..+-...++.+++...+.-.--+.|..+..-..-|+++...|+|.+|+..++.+....|..+.+.-.++.++
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555555555555555555555544444444433334333
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.47 E-value=0.17 Score=42.36 Aligned_cols=197 Identities=9% Similarity=0.022 Sum_probs=115.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHhhhcc
Q 012143 267 QASAVNVAKECLLAALKADPKA----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS-TRYAVAVSRIKDAERSQ 341 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~~~ 341 (470)
+..++++|+..|++++++.+.. ..++..+..+++++|++++-...|++.+..-..-.. .+.......+.+.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3568999999999999998874 346777889999999999999999887743211000 00001111111111111
Q ss_pred CchHHhhhhHHHHHHHhhcCCCCCCCcHHHHH----HHHHHHhccccHHHHHHHHHHHhc---chhh-----------hh
Q 012143 342 EPTEQLSWAGNEMASILREGDPVQIEPPIAWA----GFAAVQKTHHEVAAAFETEENELS---KMEE-----------CA 403 (470)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~---~~~~-----------~~ 403 (470)
....-+...++.....+..+.. ...|+ .+|.+++..+++.+-.+.+++... ..+. +.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKN-----eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKN-----ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhc-----ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 1122222222222333333221 12343 688888888888776666554221 1100 12
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHhcCCCc--HHH----HHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 404 GAGESAFLDQASAVNVAKECLLAALKADPKA--AHI----WANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 404 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+---...|....+-.+-...|++++.+.+.- |.+ .-.=|..+.+.|++++|-..|=.|++-|..+
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 2223345667777777788899998875433 222 2233556788899999999999998877654
No 304
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.47 E-value=1.1 Score=44.53 Aligned_cols=214 Identities=16% Similarity=0.123 Sum_probs=135.1
Q ss_pred CChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHH
Q 012143 73 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 152 (470)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 152 (470)
.+|..-...++......++.+|.....++....+.+.... .........+..+.. .+..|+++.|+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~-~~~l~ae~~aL~a~v-------------al~~~~~e~a~ 478 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR-QGDLLAEFQALRAQV-------------ALNRGDPEEAE 478 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc-hhhHHHHHHHHHHHH-------------HHhcCCHHHHH
Confidence 3456667788888999999999999999988766542221 111211112222221 34568889999
Q ss_pred HHHHHhhhcCccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHcCCHH--HH
Q 012143 153 SKLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDME--QS 219 (470)
Q Consensus 153 ~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~--~A 219 (470)
+..+.++..-|.+ ..++..+|.+..-.|++++|..+...+.+.... ...+....+.++..+|+.. +.
T Consensus 479 ~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~ 558 (894)
T COG2909 479 DLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ 558 (894)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999887765 346778899999999999999999998876322 1334556677888888433 33
Q ss_pred HHHHHHHH----hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh----cCCCCHH-
Q 012143 220 AKCFQDLI----LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK----ADPKAAH- 290 (470)
Q Consensus 220 ~~~~~~~l----~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~- 290 (470)
...|...- ...|.+.......+.++... . +++.+..-....++ ..|....
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~--------------------~-r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAW--------------------L-RLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHH--------------------H-HHhhhhHHhhhcchhhhhcccchhHH
Confidence 33333322 22344433444444444321 1 14444444444333 3333222
Q ss_pred --HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 291 --IWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 291 --~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
....++.+.+..|+.++|...+.++......
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 2247899999999999999999988765443
No 305
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.44 E-value=0.0064 Score=32.55 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
.++..+|.++...|++++|+..++++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 56889999999999999999999999998875
No 306
>PRK10941 hypothetical protein; Provisional
Probab=96.44 E-value=0.017 Score=49.46 Aligned_cols=65 Identities=15% Similarity=0.033 Sum_probs=60.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 263 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 45668999999999999999999999999999999999999999999999999999999887654
No 307
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=96.41 E-value=0.56 Score=40.63 Aligned_cols=204 Identities=15% Similarity=0.077 Sum_probs=107.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
..+..+...-++.-..+++++|..+.++..++.--. .-..+|...|+++++.... .+.....
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~----------------~yr~sqq 255 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET----------------IYRQSQQ 255 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH----------------HHhhHHH
Confidence 344555566667777889999999999998887543 3477899999999886311 0110000
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchH--HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC--hHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV--VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNL 206 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l 206 (470)
....|. ..+ ...+.+ .+.. +-..++.|..++|+..+|++.++...+-.|-. ..++-++
T Consensus 256 ~qh~~~-----------~~d------a~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNL 317 (556)
T KOG3807|consen 256 CQHQSP-----------QHE------AQLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENL 317 (556)
T ss_pred Hhhhcc-----------chh------hhhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 000000 011 111112 2233 33468999999999999999999988776632 2344455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 207 GIAYFQSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
-..+....-|.+....+-+.-++. |......+.-+ ++..+.-.....++.....|..-. -..|++...++++.+
T Consensus 318 iEalLE~QAYADvqavLakYDdislPkSA~icYTaA-LLK~RAVa~kFspd~asrRGLS~A----E~~AvEAihRAvEFN 392 (556)
T KOG3807|consen 318 LEALLELQAYADVQAVLAKYDDISLPKSAAICYTAA-LLKTRAVSEKFSPETASRRGLSTA----EINAVEAIHRAVEFN 392 (556)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHH-HHHHHHHHhhcCchhhhhccccHH----HHHHHHHHHHHhhcC
Confidence 555555555554444444332222 33332222211 111100000001111111111111 134777788888888
Q ss_pred CCCHHHHHHH
Q 012143 286 PKAAHIWANL 295 (470)
Q Consensus 286 p~~~~~~~~l 295 (470)
|.-+..+..+
T Consensus 393 PHVPkYLLE~ 402 (556)
T KOG3807|consen 393 PHVPKYLLEM 402 (556)
T ss_pred CCCcHHHHHH
Confidence 8877666554
No 308
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.40 E-value=0.035 Score=45.94 Aligned_cols=86 Identities=10% Similarity=0.046 Sum_probs=60.7
Q ss_pred cccHHHHHHHHHHHhc------c---hhhhhHhhHHHHHHHhcc-------HHHHHHHHHHHHhcCC------CcHHHHH
Q 012143 382 HHEVAAAFETEENELS------K---MEECAGAGESAFLDQASA-------VNVAKECLLAALKADP------KAAHIWA 439 (470)
Q Consensus 382 ~~~~~~A~~~~~~~~~------~---~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~al~~~p------~~~~~~~ 439 (470)
...+++|++.|..++- . .....+..+|++|...|+ +..|+..|+++++... +...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4456666666665332 1 112446788888888888 5666666666665432 2257889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 440 NLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 440 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
.+|.+..+.|++++|..+|.+++.....
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999876543
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.18 Score=47.10 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhhcCccchHHHHH--HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 012143 149 EEILSKLKESMQSDTRQAVVWNT--LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD- 225 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~- 225 (470)
.-++..+...+..+|.++..+.. +...+...+....+...+..++..+|++..+..+++......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33666666777788888876544 477777888988999999999999999999999999999888887777776666
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 305 (470)
+....|.+......+..++. ++......|+..++.....++....|.++.+...+.........+
T Consensus 128 a~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQ---------------LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred HHhcCcchHHHHhhHHHHHH---------------HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 78888988887766655554 466677899999999999999999999877766666554444433
No 310
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.32 E-value=0.98 Score=42.61 Aligned_cols=119 Identities=10% Similarity=0.077 Sum_probs=83.8
Q ss_pred ChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccC
Q 012143 56 KVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 135 (470)
Q Consensus 56 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (470)
....+...+...+...|-....|...|..-.+.|..+.+...|++++...|-. ...|...+....
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S------------vdlW~~Y~~f~~--- 124 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS------------VDLWLSYLAFLK--- 124 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH------------HHHHHHHHHHHh---
Confidence 34778888888999999999999999999999999999999999999875532 122222221111
Q ss_pred CCccccccCcccHHHHHHHHHHhhhcCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 012143 136 DNSLDKELEPEELEEILSKLKESMQSDTR---QAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 196 (470)
Q Consensus 136 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 196 (470)
-..|+.+.-...|+++...... ....|-..-.....++++..-...|++.++..
T Consensus 125 -------n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP 181 (577)
T KOG1258|consen 125 -------NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP 181 (577)
T ss_pred -------ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Confidence 1345556677777777664332 23455555556677788888888888887753
No 311
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.93 Score=42.19 Aligned_cols=243 Identities=9% Similarity=0.007 Sum_probs=131.8
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHhhhcccccccccch
Q 012143 184 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA----ALINYAALLLCKYGSVLAGAGANT 259 (470)
Q Consensus 184 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~ 259 (470)
...+.+.......|+++......+..+...|+.+.|+..++..+. +.... .++.++.
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw----------------- 311 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAW----------------- 311 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHH-----------------
Confidence 344444455556888888888888888888887778888887765 21111 1122222
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHH--------cCChhHHHHHHHHH---HhcCCCcccHHH
Q 012143 260 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA-NAYYL--------TGDHRSSGKCLEKA---AKLEPNCMSTRY 327 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---~~~~p~~~~~~~ 327 (470)
++.-..+|.+|...+........-..-.|..++ -|+.. .|+-+.|..+++.. +...|.+...-.
T Consensus 312 ----~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~ 387 (546)
T KOG3783|consen 312 ----LSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK 387 (546)
T ss_pred ----HHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH
Confidence 333566788888888877776555444454444 23221 23444444444433 223333322111
Q ss_pred HHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCC---CCcHHHHHHHHHHHhccccHHHHHHHHHH-Hhcchhh--
Q 012143 328 AVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ---IEPPIAWAGFAAVQKTHHEVAAAFETEEN-ELSKMEE-- 401 (470)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~-- 401 (470)
... + ..+.+....+...... |-...+|+.-|.--....+..+....+.. ..+..+.
T Consensus 388 f~~----R--------------Kverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~ 449 (546)
T KOG3783|consen 388 FIV----R--------------KVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEG 449 (546)
T ss_pred HHH----H--------------HHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHH
Confidence 000 0 0000111110000000 11111222222222222233333333332 2322222
Q ss_pred hhHhhHHHHHHHhccHHHHHHHHHHHHhcC---CC----cHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhhcc
Q 012143 402 CAGAGESAFLDQASAVNVAKECLLAALKAD---PK----AAHIWANLANAYYLTGD-HRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 467 (470)
--++-+|.++..+|+...|..+|..+++.. .. -|.++|.+|..+..+|. ..++.+++.+|-+-...
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 225688899999999999999999888532 11 27899999999999999 99999999999886643
No 312
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.24 E-value=0.015 Score=41.34 Aligned_cols=106 Identities=14% Similarity=0.067 Sum_probs=64.2
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
++.-++..|++-+|++..+..+...+++.... ..+...|. -.++.+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~---------~lh~~QG~-----------------------if~~lA~~ 49 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW---------LLHRLQGT-----------------------IFYKLAKK 49 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH---------HHHHHHhH-----------------------HHHHHHHh
Confidence 46778899999999999999998765432210 12222222 22233333
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
.+..+...-+.+ .++++|.++..+.|..+..++.+|.-+.....|+++....++++.+
T Consensus 50 ten~d~k~~yLl-----------~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 50 TENPDVKFRYLL-----------GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ccCchHHHHHHH-----------HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 332223333333 2567777777777777777777777666666677777777777654
No 313
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=1.1 Score=42.23 Aligned_cols=132 Identities=19% Similarity=0.085 Sum_probs=102.4
Q ss_pred CChHHHHHHHHHHhhcCCCChHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccccccc
Q 012143 180 GRLQSSISVLSSLLAVDPNNCDCIGN--LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGA 257 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (470)
|...-++..+...+..+|.++..+.. +...+...+....+...+..++..+|.+..+..+++..+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~----------- 113 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL----------- 113 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH-----------
Confidence 44444777788888888888876444 47777888999999999999999999999999999988872
Q ss_pred chhhhhHHHhcCCHH-HHHHHHHHHHhcCCCCHHHHHHH------HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 258 NTGEGACLDQASAVN-VAKECLLAALKADPKAAHIWANL------ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 258 ~~~~~~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
.|... -+..+...+....|++......+ +.....+|+..++.....++....|.++.....+.
T Consensus 114 ----------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~ 183 (620)
T COG3914 114 ----------DGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALM 183 (620)
T ss_pred ----------hhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence 44444 44455555888888877665555 88888899999999999999999999866555444
Q ss_pred HH
Q 012143 331 VS 332 (470)
Q Consensus 331 ~~ 332 (470)
..
T Consensus 184 ~~ 185 (620)
T COG3914 184 TA 185 (620)
T ss_pred HH
Confidence 43
No 314
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.15 E-value=0.099 Score=43.33 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=30.3
Q ss_pred cCChHHHHHHHHHHhhc----C-C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 179 SGRLQSSISVLSSLLAV----D-P--NNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 179 ~~~~~~A~~~~~~a~~~----~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
...+++|++.|.-|+-. . + .-+..+..+|++|...|+.+.....+++|+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al 145 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL 145 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 34566677766666532 1 1 125578889999999998555555544444
No 315
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.68 Score=43.36 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=112.8
Q ss_pred ccCcccHHHHHHHHHHhhh------------cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----C--------
Q 012143 142 ELEPEELEEILSKLKESMQ------------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----D-------- 196 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~-------- 196 (470)
+-....|++|...|.-+.. ..|.+.+.+..++.+...+|+.+.|....++++=. .
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 3355678888888877654 34777889999999999999999988888887631 2
Q ss_pred --------CCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhhcccccccccchhhhhH
Q 012143 197 --------PNNCD---CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGAC 264 (470)
Q Consensus 197 --------~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 264 (470)
|.+.. +++..-..+.+.|-+..|.++.+-.+.++|. +|-+...+...|.-
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL------------------ 389 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL------------------ 389 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH------------------
Confidence 22222 3444455667889999999999999999998 88777666666653
Q ss_pred HHhcCCHHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCC
Q 012143 265 LDQASAVNVAKECLLAA-----LKADPKAAHIWANLANAYYLTGD---HRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 265 ~~~~~~~~~A~~~~~~~-----~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~ 321 (470)
+..+|.=-++.++.. +..-|+ ...-..++..|..... .+.|...+.+|+...|.
T Consensus 390 --rareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 390 --RAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred --HHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 566677677766655 223344 2333445666666555 56788889999988884
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.05 E-value=0.018 Score=33.18 Aligned_cols=31 Identities=32% Similarity=0.319 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.++.++|.+|...|++++|..++++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 4678889999999999999999999888764
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.03 E-value=0.16 Score=40.76 Aligned_cols=102 Identities=16% Similarity=0.038 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINY 240 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l 240 (470)
..++..+|..|.+.|+.++|++.|.++....... .+.++.+..+....|++.....+..++-..-.. ++.. .+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~-~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER-RNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH-HHH
Confidence 4578899999999999999999999988764332 467888889999999999999999998765322 2222 222
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 284 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 284 (470)
-.++. |..+...++|..|.+.|-.+...
T Consensus 115 lk~~~----------------gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 115 LKVYE----------------GLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHH----------------HHHHHHhchHHHHHHHHHccCcC
Confidence 22222 44445677777777777666543
No 318
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.01 E-value=0.013 Score=47.46 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556666777777777777777777777777777777777777777777777776553
No 319
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.49 Score=36.85 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=32.1
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKN--AHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
+...++.++|...|..+-+..-.. .-+.+..|.+..+.|+...|+..|..+-..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 445566666666666554443322 224555666667777777777777766554
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.99 E-value=0.055 Score=48.97 Aligned_cols=124 Identities=14% Similarity=0.023 Sum_probs=73.6
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccc
Q 012143 177 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAG 256 (470)
Q Consensus 177 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (470)
...|+.-.|-.-...++...|.+|......+.+...+|+|+.+...+..+-..-.....+...+-....
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~----------- 368 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH----------- 368 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh-----------
Confidence 345677777777777777777777777777777777777777777665544332222222222222222
Q ss_pred cchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 257 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
..|++++|.....-.+.-.-+++++..--+.....+|-++++..++++.+.++|.
T Consensus 369 ----------~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 369 ----------GLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ----------chhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 4666666666666665555555555555555555566666666666666666554
No 321
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.96 E-value=1.3 Score=40.81 Aligned_cols=82 Identities=7% Similarity=-0.111 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC-hhHHHHHHHHHHHHH
Q 012143 27 SKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ-PLKAVSSYEKAEEIL 105 (470)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 105 (470)
..|..++...+.+...|.....- ..+.+.+.+....|.+++..+|++++.|..-|.-.+..+. ++.|...|.++++.+
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f-~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAF-CKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHH-HHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 67888888889899999877766 6677779999999999999999999999999988888776 999999999999998
Q ss_pred hhhh
Q 012143 106 LRCE 109 (470)
Q Consensus 106 ~~~~ 109 (470)
|+.+
T Consensus 171 pdsp 174 (568)
T KOG2396|consen 171 PDSP 174 (568)
T ss_pred CCCh
Confidence 8764
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.95 E-value=0.066 Score=40.47 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=60.4
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 217 (470)
..++++++..++..+--..|+.+..-..-|.++...|+|.+|+..++...+-.+..+...-.++.|+.-+|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 34566888888888878888888888888888888899999998888888877777877788888888887754
No 323
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.84 E-value=0.019 Score=46.50 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=56.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 265 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
..+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 347899999999999999999999999999999999999999999999999999998754
No 324
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=95.77 E-value=1.1 Score=38.55 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHH----------------hhcCCCChHHHHHHHHH-HH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL----------------LAVDPNNCDCIGNLGIA-YF 211 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----------------~~~~~~~~~~~~~la~~-~~ 211 (470)
..|+++- +.-...-.++..+..+|..+.+.|++.+|..+|-.. .+..|...+.+...+.+ |.
T Consensus 74 ~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 74 KAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYL 152 (260)
T ss_dssp HHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHH
T ss_pred HHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 4455555 322333367889999999999999999988887432 12245556666655544 56
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 012143 212 QSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~ 229 (470)
..++...|...+...++.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 779999998887776654
No 325
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.71 E-value=1.6 Score=39.78 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=174.4
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 012143 154 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 233 (470)
-++.-++.+|++...|+.+..-+..+|.+++-.+.|++...-.|-.+.+|...-..-...+++..-...|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 5667788899999999999999999999999999999999888888888876666566678898888999998864332
Q ss_pred hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------cCC
Q 012143 234 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL---------TGD 304 (470)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~---------~g~ 304 (470)
.+.|...... ..+.... ..| ...-..-+|.++.-.++-.+|.....|...+..+.. +.+
T Consensus 109 ldLW~lYl~Y-IRr~n~~--------~tG---q~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqr 176 (660)
T COG5107 109 LDLWMLYLEY-IRRVNNL--------ITG---QKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQR 176 (660)
T ss_pred HhHHHHHHHH-HHhhCcc--------ccc---chhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHH
Confidence 3444332222 2110000 000 011223445555555555678888888777765543 344
Q ss_pred hhHHHHHHHHHHhcCCCcccHHH-H-----HHHHHHHHhhhccCchHHhhhh---HHHHHHHhhcCCCCC----------
Q 012143 305 HRSSGKCLEKAAKLEPNCMSTRY-A-----VAVSRIKDAERSQEPTEQLSWA---GNEMASILREGDPVQ---------- 365 (470)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~-~-----l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------- 365 (470)
.+.-...|.+++..--++..-.+ . ..+..+....-.-+....+..+ ..++...........
T Consensus 177 id~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 177 IDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc
Confidence 56677788888875434332211 1 1111111000000111111111 122221111111111
Q ss_pred -CCcHHHHHHHHHHHhccc------cHHHHH-HHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 366 -IEPPIAWAGFAAVQKTHH------EVAAAF-ETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 366 -~~~~~~~~~l~~~~~~~~------~~~~A~-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
.....-|.++.......| -..+-+ -.+.+.+. +..++.|+.....+...++-+.|+...++++...|.
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-- 334 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-- 334 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--
Confidence 111123555544443322 112222 12333444 455677887777888888999999988888777665
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
....++.+|...++.+.-..+|+++.+-+
T Consensus 335 -L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 335 -LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred -hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 77889999999999888888888877644
No 326
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.71 E-value=0.027 Score=47.89 Aligned_cols=89 Identities=17% Similarity=0.242 Sum_probs=77.4
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 154 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN-LGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
.|.++....|+++..|...+..-...|.+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...|.++++.+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4455666788999999999888888999999999999999999999999987 566678899999999999999999999
Q ss_pred ChHHHHHHHH
Q 012143 233 HPAALINYAA 242 (470)
Q Consensus 233 ~~~~~~~l~~ 242 (470)
++..|...-.
T Consensus 175 ~p~iw~eyfr 184 (435)
T COG5191 175 SPRIWIEYFR 184 (435)
T ss_pred CchHHHHHHH
Confidence 9988875543
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.57 E-value=0.18 Score=37.30 Aligned_cols=60 Identities=22% Similarity=0.144 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 268 ASAVNVAKECLLAALK-ADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
..+..+.+.+++..++ ..|. .-+..+.|+..+++.|+|+.++.+.+..++..|++..+..
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4567788999999996 4554 4567888999999999999999999999999999877654
No 328
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.47 E-value=2.9 Score=41.21 Aligned_cols=266 Identities=10% Similarity=0.033 Sum_probs=160.2
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH---hCChhHHH
Q 012143 19 GKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR---LGQPLKAV 95 (470)
Q Consensus 19 g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~---~g~~~~A~ 95 (470)
|.....+ .+++.-+.+++-+......+-.+ +...|++++....-.++....|.++..|.....-... .+...++.
T Consensus 93 ~~~~~ei-~t~~ee~ai~~y~~~~~v~Li~l-lrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 93 GGGNQEI-RTLEEELAINSYKYAQMVQLIGL-LRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccchhHH-HHHHHHhcccccchHHHHHHHHH-HHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 3444555 67777778888777777777777 8889999998888888888899998888765544433 35677888
Q ss_pred HHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc-------cchHH
Q 012143 96 SSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-------RQAVV 168 (470)
Q Consensus 96 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~ 168 (470)
..|++++.-.-. .+-+...+......+.+ +...++++.-...|.+++..-- .....
T Consensus 171 ~~~ekal~dy~~------v~iw~e~~~y~~~~~~~-----------~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~ 233 (881)
T KOG0128|consen 171 ELFEKALGDYNS------VPIWEEVVNYLVGFGNV-----------AKKSEDYKKERSVFERALRSLGSHITEGAAIWEM 233 (881)
T ss_pred HHHHHHhccccc------chHHHHHHHHHHhcccc-----------ccccccchhhhHHHHHHHhhhhhhhcccHHHHHH
Confidence 888888863211 12222222333333322 3455677888888888876432 22344
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH----HHHHH---HHHHHcCCHHHHHHHHHHHH-------hhCCCCh
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC----IGNLG---IAYFQSGDMEQSAKCFQDLI-------LKDQNHP 234 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~la---~~~~~~g~~~~A~~~~~~~l-------~~~p~~~ 234 (470)
+...-..|...-..++-+.++...+... -+.++ |.... .......+++.|...+.+.+ ...|.-.
T Consensus 234 ~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~ 312 (881)
T KOG0128|consen 234 YREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKD 312 (881)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5555555665555577777777777654 22211 11111 11223445555655544433 3333333
Q ss_pred HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCChhHHHHHHH
Q 012143 235 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY-YLTGDHRSSGKCLE 313 (470)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~ 313 (470)
..|..+..... ..|.+..-...+++++...+.+...|...+... ..++-.+.+...+.
T Consensus 313 q~~~~yidfe~---------------------~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ 371 (881)
T KOG0128|consen 313 QEWMSYIDFEK---------------------KSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHP 371 (881)
T ss_pred HHHHHHHHHHH---------------------hcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccc
Confidence 33333333332 678888888888888888888788877776543 33445555666677
Q ss_pred HHHhcCCCcccH
Q 012143 314 KAAKLEPNCMST 325 (470)
Q Consensus 314 ~a~~~~p~~~~~ 325 (470)
++++..|-....
T Consensus 372 ra~R~cp~tgdL 383 (881)
T KOG0128|consen 372 RAVRSCPWTGDL 383 (881)
T ss_pred hhhcCCchHHHH
Confidence 777776665443
No 329
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.45 E-value=2.5 Score=40.40 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=35.5
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHH--------------hCCCChhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVAR--------------KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
..|..++.. ....=+++.|.+.|.++-. .....| --..+|.++.-.|+|.+|...|.+
T Consensus 586 ~DW~~LA~~-ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 586 TDWRELAME-ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHHHHHH-HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHH
Confidence 356677776 6667777888887776521 111112 223466777777777777777765
No 330
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=1.1 Score=40.35 Aligned_cols=163 Identities=14% Similarity=0.116 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHH------------cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC-
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLK------------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD- 215 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~- 215 (470)
.+++..=.+.+..+|+...+|...-.++.. +.-.++-+.+...+++.+|++..+|+.+.+++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 567788888888899887777654333322 2245667788888999999999999999999997764
Q ss_pred -HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 216 -MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 216 -~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
+..=+...+++++.+|.+..+|...-.+.... -.......+=+++..+++..++.+..+|..
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~-----------------~~~~~~~~~El~ftt~~I~~nfSNYsaWhy 188 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA-----------------ERSRNLEKEELEFTTKLINDNFSNYSAWHY 188 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHH-----------------hcccccchhHHHHHHHHHhccchhhhHHHH
Confidence 68889999999999999998887665555421 011223667788999999999999999998
Q ss_pred HHHHHHH------cCC------hhHHHHHHHHHHhcCCCcccHHHH
Q 012143 295 LANAYYL------TGD------HRSSGKCLEKAAKLEPNCMSTRYA 328 (470)
Q Consensus 295 la~~~~~------~g~------~~~A~~~~~~a~~~~p~~~~~~~~ 328 (470)
...+... .|+ ...-+..-..++-.+|++..+|+.
T Consensus 189 Rs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 189 RSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 8877763 231 223445566777789999988774
No 331
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.40 E-value=0.68 Score=33.48 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=70.2
Q ss_pred HHHHHH--HHHHHcCChhHHHHHHHHHHhcCCCccc--HHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCC
Q 012143 291 IWANLA--NAYYLTGDHRSSGKCLEKAAKLEPNCMS--TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQI 366 (470)
Q Consensus 291 ~~~~la--~~~~~~g~~~~A~~~~~~a~~~~p~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (470)
+|..|+ .-...-|-|++|...+.+++.....-+. +.-.-+
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~G------------------------------------ 52 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDG------------------------------------ 52 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHH------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccccc------------------------------------
Confidence 344443 3445668899999999999876544321 000000
Q ss_pred CcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHH----HHHH
Q 012143 367 EPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIW----ANLA 442 (470)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~la 442 (470)
-+...+..++..+...|+|++++.. -+.|+.+|.+-=+++.+....| ++.|
T Consensus 53 FDA~chA~Ls~A~~~Lgry~e~L~s-------------------------A~~aL~YFNRRGEL~qdeGklWIaaVfsra 107 (144)
T PF12968_consen 53 FDAFCHAGLSGALAGLGRYDECLQS-------------------------ADRALRYFNRRGELHQDEGKLWIAAVFSRA 107 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHH-------------------------HHHHHHHHHHH--TTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHH-------------------------HHHHHHHHhhccccccccchhHHHHHHHHH
Confidence 0123455566666666666666544 2456666666666777765544 6788
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhc
Q 012143 443 NAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
..+..+|+.++|+..|+++-+++.
T Consensus 108 ~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 108 VALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHH
Confidence 889999999999999999988763
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.39 E-value=0.28 Score=37.22 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=39.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.....-...++.+++...+...--+.|+.+..-..-|.++...|+|.+|+..++...+..+..+...-.++.+
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3333444455666666665555555666666666666666666666666666666555444444333333333
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.37 E-value=0.22 Score=46.42 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=75.0
Q ss_pred hhhcChhhHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 52 SREEKVSSLKTGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 52 ~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
...++++.+.+..... ++-|.- ..-...++..+.++|.++.|+..-..--.. +.+
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r--------------------FeL--- 327 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR--------------------FEL--- 327 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH--------------------HHH---
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH--------------------hHH---
Confidence 3456677765555411 112222 334566677777888888777765432111 111
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
.++.|+++.|.+..++. +++..|..+|...+.+|+++-|..+|+++- -+..|..+|
T Consensus 328 -----------Al~lg~L~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy 383 (443)
T PF04053_consen 328 -----------ALQLGNLDIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLY 383 (443)
T ss_dssp -----------HHHCT-HHHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred -----------HHhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHH
Confidence 34677888888765443 467799999999999999999999998852 245666677
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 012143 211 FQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~ 228 (470)
.-.|+.+.=.+..+.+..
T Consensus 384 ~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 384 SSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHCT-HHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 778887655555555443
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.30 E-value=0.044 Score=31.50 Aligned_cols=31 Identities=32% Similarity=0.217 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 105 (470)
..++..+|.+|..+|++++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999999873
No 335
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.26 E-value=0.46 Score=35.29 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHcC---ChHHHHHHHHHHhh-cCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 166 AVVWNTLGLILLKSG---RLQSSISVLSSLLA-VDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
....++++.++.... +..+.+.+++..++ -.|. ..+..+.++..+.+.++|+.++.+.+..++..|++..+....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 467788888887764 46778999999986 4453 356889999999999999999999999999999998876543
Q ss_pred H
Q 012143 241 A 241 (470)
Q Consensus 241 ~ 241 (470)
-
T Consensus 112 ~ 112 (149)
T KOG3364|consen 112 E 112 (149)
T ss_pred H
Confidence 3
No 336
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=2.1 Score=38.60 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc----CCHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR--LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS----GDMEQSAK 221 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~ 221 (470)
+++-+.+...++..+|+...+|..+..++.+.+. +..=+...+++++.+|.+-.+|...=.+.... ....+=++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 4777888899999999999999999999987764 57889999999999999887776555544432 23567788
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
+..+++.-++.|..+|.....++........... .........-++....++-.+|++..+|+..-.
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~---------~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rW 237 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN---------FMPKELLQSELEMVHSAIFTDPEDQSCWFYHRW 237 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHhccccccCc---------cCCHHHHHHHHHHHHHHHhcCccccceeeehHH
Confidence 8899999899999999988877764322210000 000111334556677788889999988877433
No 337
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.00 E-value=2 Score=37.38 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=39.2
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHh
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARK 70 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 70 (470)
..+..+..+.+ ..-..+|+++|+-+.++..++.- ...-+.+|++.|+++++.
T Consensus 194 AWRERnp~~RI-~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 194 AWRERNPPARI-KAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHhcCcHHHH-HHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHH
Confidence 33445667777 78889999999999999888755 344567888888888764
No 338
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.98 E-value=0.24 Score=50.96 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=114.0
Q ss_pred CcccHHHHHH------HHH-HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------CCCChHHHHHHHH
Q 012143 144 EPEELEEILS------KLK-ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGI 208 (470)
Q Consensus 144 ~~~~~~~A~~------~~~-~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~ 208 (470)
..|.+.++.+ .+. ..-...|.....+..++.++...|++++|+..-.++.-+ .|+....+.+++.
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 4455555555 665 334467888999999999999999999999998887654 3455668888998
Q ss_pred HHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 209 AYFQSGDMEQSAKCFQDLILK--------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
..+..++...|...+.++..+ .|.-.....++..++. ..++++.|+.+.+.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~---------------------~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL---------------------GVEEADTALRYLES 1082 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh---------------------hHHHHHHHHHHHHH
Confidence 889999999999999988754 2333333445555544 57889999999999
Q ss_pred HHhcCCC--------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 281 ALKADPK--------AAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 281 ~~~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
+...... ....+..+++.+...+++..|....+....+
T Consensus 1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9875322 4556777888888888888887777766543
No 339
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.79 E-value=0.12 Score=36.35 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=40.5
Q ss_pred HHHhccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 411 LDQASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 411 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
..+.++|.+|++.+.+.+..... ...+..++|.++...|++++|+..+++++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34567777777766666654221 1356677888888889999999988888887754
No 340
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.71 E-value=0.41 Score=41.11 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=66.2
Q ss_pred HHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 389 FETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+......+......++..++..+...++++.++..+++.+..+|-+..+|..+-..|...|+...|+..|++.-++.
T Consensus 141 V~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 141 VLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 33444455555566777888899999999999999999999999999999999999999999999999999987754
No 341
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.66 E-value=0.16 Score=46.69 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=81.2
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc---CChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 219 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (470)
+-.+....++..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.|+.++..++++.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3456678899999999999999999999999998875 5666788888899999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCChH
Q 012143 220 AKCFQDLILKDQNHPA 235 (470)
Q Consensus 220 ~~~~~~~l~~~p~~~~ 235 (470)
+++...+....|.+..
T Consensus 465 l~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDVA 480 (758)
T ss_pred hhhHHHHhhcCchhhh
Confidence 9999988888885543
No 342
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.61 E-value=0.14 Score=47.14 Aligned_cols=93 Identities=16% Similarity=0.013 Sum_probs=72.6
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 212 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
..+....|+..|.+++...|.....+.+.+.++..+. -.|+.-.|+.-...+++++|....+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk------------------W~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK------------------WRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh------------------ccccHHHHHHhHHhhccCChHHHHH
Confidence 3445777888888888888888888877777776431 2456667888888888888888889
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
|+.|+.++..++++.+|+.+...+....|.+
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999999988887777777754
No 343
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.49 E-value=1.1 Score=36.08 Aligned_cols=95 Identities=7% Similarity=-0.113 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHhcch-----hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC--CcHH----
Q 012143 368 PPIAWAGFAAVQKTHHEVAAAFETEENELSKM-----EECAGAGESAFLDQASAVNVAKECLLAALKADP--KAAH---- 436 (470)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~---- 436 (470)
....+..+|..|.+.|+.+.|++.|.+..+.. ..+.++.+..+....+++.....+..++-..-. .+.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34678899999999999999999999966632 225567888888889999999999998876532 3332
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVL 462 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al 462 (470)
....-|..+...++|..|...|-.+.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 23445666778888888888876554
No 344
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.34 Score=41.00 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
...++=..+...++++.|..+.++.+.++|.++.-+...|.+|.++|.+.-|++.++..++..|+.+.+-......
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3445566788899999999999999999999999999999999999999999999999999999998776544433
No 345
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=4.4 Score=37.98 Aligned_cols=254 Identities=13% Similarity=0.024 Sum_probs=142.4
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~ 224 (470)
+...+.+.......|+++...+..+..+...|+.+.|+..+...+. +.- .-.++.+|+++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5555666666777899999999999999999998888999888877 221 3367889999999999999999999
Q ss_pred HHHhhCCCChHHHHHHH-HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHH
Q 012143 225 DLILKDQNHPAALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA---LKADPKAAHIWANLANAYY 300 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~---~~~~p~~~~~~~~la~~~~ 300 (470)
.....+.-....+..++ -++... -..+....|+-++|-.+++.. +...|.+..+-..+
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~-------------~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~----- 389 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQN-------------WEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI----- 389 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcc-------------HHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH-----
Confidence 98766543333333333 222210 011111233444444444332 22233222211111
Q ss_pred HcCChhHHHHHHHHHHhcCCCcccH--HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCC-cHHHHHHHHH
Q 012143 301 LTGDHRSSGKCLEKAAKLEPNCMST--RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE-PPIAWAGFAA 377 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 377 (470)
..++.++-.+.- .++....+ ++.++...-+-......... .+..........+++ ...-++.+|.
T Consensus 390 ----~RKverf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-------k~~~~~~~~~~~d~Dd~~lk~lL~g~ 457 (546)
T KOG3783|consen 390 ----VRKVERFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE-------KMRAELENPKIDDSDDEGLKYLLKGV 457 (546)
T ss_pred ----HHHHHHHhcccc-ccccccccchHHHHHHHHhhcccCChhhHH-------HHHHHHhccCCCCchHHHHHHHHHHH
Confidence 111111111110 11111111 12221111110000000000 111111111111222 2345678899
Q ss_pred HHhccccHHHHHHHHHHHhc---------chhhhhHhhHHHHHHHhcc-HHHHHHHHHHHHhcCCCc
Q 012143 378 VQKTHHEVAAAFETEENELS---------KMEECAGAGESAFLDQASA-VNVAKECLLAALKADPKA 434 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~ 434 (470)
++...|+...|...|...++ -..+.++|.+|..+...+. ..++..++.+|-+...++
T Consensus 458 ~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 458 ILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 99999999999999887653 2234678899999999988 999999999998876543
No 346
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.37 E-value=0.061 Score=27.15 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYE 99 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~ 99 (470)
+.+.+.+|.++...|++++|...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3567889999999999999998876
No 347
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.36 E-value=0.13 Score=43.84 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=72.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN-LANAYY 300 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-la~~~~ 300 (470)
.|.++....|+++..|...+.... +.|.+.+--..|.+++..+|.+++.|.. .+.-+.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~---------------------k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~ 153 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVI---------------------KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELF 153 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhh
Confidence 344555567888888877766555 5678888899999999999999999988 566788
Q ss_pred HcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 301 LTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
..++++.+...|.++++.+|+++..|...
T Consensus 154 ~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 154 EIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred hhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 89999999999999999999999887643
No 348
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.35 E-value=0.093 Score=29.35 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+++..||.+-...++|++|+..|++++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888753
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.28 E-value=0.07 Score=26.94 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLE 459 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~ 459 (470)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456777888888888888877665
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.23 E-value=4.5 Score=37.32 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=97.2
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
....|++-.|.+.+..++...|..|......+.+....|+|+.|...+..+-...... +... .+.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-------~~~~--~~~------ 363 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-------DSTL--RCR------ 363 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-------chHH--HHH------
Confidence 4567899999999999999999999999999999999999999988877655432111 1110 010
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
.......|++++|.....-++...-.++++...-+-.....|-++++..++++.+.++|..
T Consensus 364 --------~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 364 --------LRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred --------HHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 0113466888999999999988887888877777777778889999999999999987753
No 351
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.02 E-value=8.6 Score=39.77 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=78.2
Q ss_pred cccCcccHHHHHHHHHHhhhcCccch---HHHHHHHHHHHHc----C---ChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 141 KELEPEELEEILSKLKESMQSDTRQA---VVWNTLGLILLKS----G---RLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 141 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
..+..+.|++|+..|++.-...|... ++.+..|.....+ | .+++|+..|++.- -.|.-|--|...|.+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence 46678899999999999999998764 5777777776653 3 4777888887743 3566777889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 211 FQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
.++|++++-+++|.-+++..|.+|..-
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 999999999999999999999888653
No 352
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.98 E-value=8.7 Score=39.72 Aligned_cols=220 Identities=9% Similarity=-0.014 Sum_probs=120.2
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
......+.....|+.|+..|++.....|..... -++.+..|..+...... .-....+++|+..|++.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG---------YEAQFRLGITLLEKASE----QGDPRDFTQALSEFSYL 545 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc---------hHHHHHhhHHHHHHHHh----cCChHHHHHHHHHHHHh
Confidence 345566777888999999999998877654321 12223333333222221 11224688899988876
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-----GDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~ 233 (470)
.. .|.-|--|...|.+|.++|++++-+++|.-+++..|..|..-...-.+-.++ .+-..|....--++..-|..
T Consensus 546 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 546 HG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred cC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 53 5666778889999999999999999999999999998876433222222211 12234444444455555544
Q ss_pred hHHHHH--HHHHHHhhhccccc--------ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 234 PAALIN--YAALLLCKYGSVLA--------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 234 ~~~~~~--l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
...... +-..+....+.... .....-..-.+-.-.|..---.+.++++....| ..+..+.-.+...+|
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 702 (932)
T PRK13184 625 ISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRD--YRALADIFYVACDLG 702 (932)
T ss_pred ccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhccc--HHHHHHHHHHHHHhc
Confidence 332211 11111100000000 000000000111223444444556666666544 366666666777888
Q ss_pred ChhHHHHHHHH
Q 012143 304 DHRSSGKCLEK 314 (470)
Q Consensus 304 ~~~~A~~~~~~ 314 (470)
.++-+......
T Consensus 703 ~~~~~~~~~~~ 713 (932)
T PRK13184 703 NWEFFSQFSDI 713 (932)
T ss_pred cHHHHHHHHHH
Confidence 88766554443
No 353
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.74 E-value=0.18 Score=28.23 Aligned_cols=30 Identities=33% Similarity=0.259 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 012143 76 HAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 105 (470)
+++..||.+-...++|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999873
No 354
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.58 E-value=0.85 Score=39.25 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
..++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|++.-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5577788999999999999999999999999999999999999999999999999999987653
No 355
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.52 E-value=8.7 Score=38.19 Aligned_cols=51 Identities=8% Similarity=-0.045 Sum_probs=42.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
..++++.+..++...-..........+.+|..+...|+.++|...|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 678888888888776554455788999999999999999999999999854
No 356
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.47 E-value=6.6 Score=36.66 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=43.6
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCCCC
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ--------------------SGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~~l~~~p~~ 233 (470)
.-|....++.+|+..+...++.+..+..+.-.+..-+.. -.++.+++.-|++.+..+..+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 345567889999999999999888887776666555444 456778888888877665443
No 357
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.38 E-value=0.71 Score=41.43 Aligned_cols=77 Identities=6% Similarity=-0.018 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCChHHHHHHHHHHH
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL---KDQNHPAALINYAALLL 245 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~ 245 (470)
-..+..||.++++.+-|+..-.+.|.++|....-+...|.++..+.+|.+|-..+.-+.- +...+......+...|+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 446889999999999999999999999999999999999999999999999877655442 33333333344444444
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.36 E-value=1.5 Score=35.41 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCChhHHH
Q 012143 268 ASAVNVAKECLLAALKADPK----AAHIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~ 309 (470)
..+.++++..+.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44556666666666655332 4667777777777777776663
No 359
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.28 E-value=0.39 Score=26.51 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~ 222 (470)
+..+|..+..+|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 360
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.27 E-value=0.31 Score=26.92 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHH--HHHHhhcCCCC
Q 012143 167 VVWNTLGLILLKSGRLQSSISV--LSSLLAVDPNN 199 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~--~~~a~~~~~~~ 199 (470)
+.++.+|..+..+|++++|+.. |+-+..++|.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678899999999999999999 54777776653
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.23 E-value=0.39 Score=33.83 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=44.7
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 175 ILLKSGRLQSSISVLSSLLAVDPN---------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
...+.|+|..|++.+.+.+..... ...+...+|.++...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 346778899998888887765221 135678899999999999999999999998643
No 362
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.98 E-value=1.4 Score=45.74 Aligned_cols=160 Identities=16% Similarity=0.086 Sum_probs=96.0
Q ss_pred hhhHHHhcCCHHHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--------cccH
Q 012143 261 EGACLDQASAVNVAKE------CLL-AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN--------CMST 325 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~------~~~-~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--------~~~~ 325 (470)
.|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|++++|+..-.++.-+... ....
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 4444445666776666 555 333457888999999999999999999999988877654322 1122
Q ss_pred HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh---------
Q 012143 326 RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--------- 396 (470)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------- 396 (470)
+.+++ ......++...|...+.+..
T Consensus 1018 y~nla----------------------------------------------l~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 1018 YGNLA----------------------------------------------LYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred hhHHH----------------------------------------------HHHHhccCccchhhhHHHHHHhhccccCC
Confidence 22222 22222222222222222211
Q ss_pred -cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 397 -SKMEECAGAGESAFLDQASAVNVAKECLLAALKADP--------KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 397 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.|.......+++.++...++++.|+.+.+.|+..+- .....+..++++...++++..|....+....+|.
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 122222334555566667777888888877776431 2345666777777778888888877777777664
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.90 E-value=3 Score=33.77 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=32.7
Q ss_pred CcccHHHHHHHHHHhhhcCcc----chHHHHHHHHHHHHcCChHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTR----QAVVWNTLGLILLKSGRLQSSI 186 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~~A~ 186 (470)
...+.++++..+.++++..+. +++++..|+.++..+|+++.|-
T Consensus 152 ~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 152 TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345567777777777765433 4788999999999999998874
No 364
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.85 E-value=0.32 Score=41.15 Aligned_cols=65 Identities=14% Similarity=-0.006 Sum_probs=59.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 263 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
..+...++++.|..+.++.+..+|.++.-+.-.|.+|.++|.+.-|+..++..++..|+++.+-.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 34557899999999999999999999999999999999999999999999999999999876544
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.57 E-value=1.7 Score=28.95 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=19.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 207 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
|.-++...+.++|+..++++++..++.+..+..+|.+
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l 49 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYL 49 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3334455555555555555555555555544444443
No 366
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.51 E-value=3.8 Score=31.35 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=76.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHH
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 346 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (470)
..+.+...+.+++..+..++.++..+..+..+|...+ ..+.+..++. .++..+.-..+..+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~yd~~~~~~~c-------------- 79 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN----KSNHYDIEKVGKLC-------------- 79 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh----ccccCCHHHHHHHH--------------
Confidence 4678899999999999988888888889998887653 4455555552 12222111111111
Q ss_pred hhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHH
Q 012143 347 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLA 426 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 426 (470)
.. ...|.....++.+.|.+.+|+..+ ....++++.|++++.+
T Consensus 80 ------------~~--------~~l~~~~~~l~~k~~~~~~Al~~~------------------l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 80 ------------EK--------AKLYEEAVELYKKDGNFKDAIVTL------------------IEHLGNYEKAIEYFVK 121 (140)
T ss_pred ------------HH--------cCcHHHHHHHHHhhcCHHHHHHHH------------------HHcccCHHHHHHHHHh
Confidence 00 123555666777778888877663 2233678888888886
Q ss_pred HHhcCCCcHHHHHHHHHHHHH
Q 012143 427 ALKADPKAAHIWANLANAYYL 447 (470)
Q Consensus 427 al~~~p~~~~~~~~la~~~~~ 447 (470)
+.+++.|..++..+..
T Consensus 122 -----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 122 -----QNNPELWAEVLKALLD 137 (140)
T ss_pred -----CCCHHHHHHHHHHHHc
Confidence 3577888888876553
No 367
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=11 Score=36.35 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
+.+-|.-.++..+|..+++.|...+...|.+.....- +.... .+..||....+.+.|.+++.++-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR--------------~l~~CYL~L~QLD~A~E~~~EAE 421 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQR--------------ALQVCYLKLEQLDNAVEVYQEAE 421 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHH--------------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455666778889999999999999887766543221 22222 13456668889999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
+.+|.++-....+-.+....|.-++|+.+..+.....
T Consensus 422 ~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 422 EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 9999998888888888889999999998888776543
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.09 E-value=0.93 Score=38.65 Aligned_cols=62 Identities=23% Similarity=0.072 Sum_probs=55.1
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 404 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 404 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
....+..|...|.+.+|+.+.++++..+|-+...+..+-.++..+||--.|++.|++.-+..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999998876554
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.05 E-value=1.3 Score=29.46 Aligned_cols=58 Identities=16% Similarity=-0.015 Sum_probs=44.8
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHH---HHHHHcCChHHHHHHHHHHHHhh
Q 012143 408 SAFLDQASAVNVAKECLLAALKADPKAAHIWANLA---NAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 408 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
|.-+....+.++|+..++++++..++.++-+..+| .+|...|++++.+++--.=+++.
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455778889999999999999888877666555 45688899999888877666654
No 370
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.89 E-value=0.75 Score=40.32 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 185 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 185 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
|..+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++......+.+..++..++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555443333444445444443
No 371
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.39 E-value=17 Score=36.31 Aligned_cols=79 Identities=5% Similarity=-0.052 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcc-hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 385 VAAAFETEENELSK-MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 385 ~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
..++...+...... .+....--....-...++++....++...-..........|.+|..+...|+.++|..+|+++..
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44555555543322 12222222222444778888877777775444445677889999999889999999999998743
No 372
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.38 E-value=13 Score=35.05 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=35.7
Q ss_pred CcccHHHHHHHHH--HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 144 EPEELEEILSKLK--ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 144 ~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
..++++++..... +.+..-| ..-...++..+.++|.++.|+... .+++..+.|+ .+.|+.+.|.+
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~ 339 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALE 339 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHH
Confidence 4566777665554 2222222 223455666777777777777643 2233333332 34555555544
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
..+. .+++..|..+|...+
T Consensus 340 ~a~~-----~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 340 IAKE-----LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HCCC-----CSTHHHHHHHHHHHH
T ss_pred HHHh-----cCcHHHHHHHHHHHH
Confidence 3322 224445555555544
No 373
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.90 E-value=2.5 Score=38.18 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=49.2
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+..||.+.++++-|+....+.|..+|..+.-+...|.++..+.+|.+|...+--+
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567779999999999999999999999999999999999999999987766544
No 374
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.59 E-value=9.8 Score=32.30 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=37.4
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HcCChhHHHHHHHHHHhcC
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPK-AAHIWANLANAYY-LTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 319 (470)
++.+..+.|+|++.+.++++++..+|+ +.+-...++.+|- ..|....+...+....+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 456666899999999999999998776 3444555555552 3455555555555544433
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.22 E-value=1.5 Score=37.42 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+...+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.+++.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34457778899999999999999999999999999999999999999888888887754
No 376
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=15 Score=33.35 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=87.8
Q ss_pred HHHcCChHHHHHHHHHHhhc----CCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHH
Q 012143 176 LLKSGRLQSSISVLSSLLAV----DPN-----NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD--QNHPAALINYAALL 244 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~----~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~ 244 (470)
++.++++.+|.++-+..+.. +.. ....|+.+..+|...|+...-...+...+... ..+......+..++
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34568889988887766542 111 24578888889999999777776666655432 12233333333333
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
. ..|...+.|+.|-....+..-- +.......+.+|.+..-+++|..|.+++-.|+...|
T Consensus 216 L-----------------r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 216 L-----------------RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred H-----------------HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 3 2344677888888877765411 112356678899999999999999999999999999
Q ss_pred Ccc
Q 012143 321 NCM 323 (470)
Q Consensus 321 ~~~ 323 (470)
.+.
T Consensus 279 q~~ 281 (493)
T KOG2581|consen 279 QHA 281 (493)
T ss_pred chh
Confidence 843
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.83 E-value=0.73 Score=26.80 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 439 ANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 439 ~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
+.||..|..+|+.+.|.+.++++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788888888888888888888875
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=12 Score=32.11 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=88.9
Q ss_pred ccCcccHHHHHHHHHHhhhcCc--------cchHHHHHHHHHHHHcCChHHHHHHHHH---Hhhc--CCCChHHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDT--------RQAVVWNTLGLILLKSGRLQSSISVLSS---LLAV--DPNNCDCIGNLGI 208 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~---a~~~--~~~~~~~~~~la~ 208 (470)
..+.+++++|+..|.+.+.... ....+...++.+|...|++..--+.... +... .|....+...+..
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 3467889999999999987621 2234677899999999987654443332 2221 1111112211111
Q ss_pred HH-HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc---
Q 012143 209 AY-FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--- 284 (470)
Q Consensus 209 ~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--- 284 (470)
-+ .....++.-+.....+++...........+..- ..+...+.+.|+|.+|+......+..
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le---------------~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELE---------------CKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 11 122344455555555544322221111111111 11334455788888888777655432
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 285 ---DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 285 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
.|.-..++..-..+|....+..++...+..+..
T Consensus 158 ~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 158 YDDKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 244556677777888888888877777766544
No 379
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.03 E-value=1.2 Score=23.50 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012143 415 SAVNVAKECLLAALKADPKAAHIWANLANA 444 (470)
Q Consensus 415 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 444 (470)
|+++.|...|++++...|.++.+|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 457889999999999999999999887654
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.87 E-value=1.7 Score=35.51 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=38.5
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
++.+.+.+++...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 455566677777777777777766666666666667777777777776666666654
No 381
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.52 E-value=2.2 Score=37.29 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=53.4
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 212 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 212 (470)
|+.+|.+|+...|.+...+..+|.++...|+.-.|+-+|-+++......+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998766668888888888877
No 382
>PF12854 PPR_1: PPR repeat
Probab=88.34 E-value=1.3 Score=24.03 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 73 KNAHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
.+...|..+-..+.+.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3567888999999999999999999986
No 383
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.30 E-value=3.9 Score=27.09 Aligned_cols=50 Identities=16% Similarity=0.030 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012143 370 IAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 444 (470)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 444 (470)
..+...+.-+...|++.+|+.. |.+|++.+.+++...|+++.-......+
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~-------------------------Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITN-------------------------YKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHH-------------------------HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3455666677777888888776 4677888888888889887654444444
No 384
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.09 E-value=1.7 Score=22.75 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|+.+.|...|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666666666666655443
No 385
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.83 E-value=17 Score=31.24 Aligned_cols=75 Identities=12% Similarity=-0.014 Sum_probs=52.8
Q ss_pred HHHHHHHHHHh-cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHH
Q 012143 386 AAAFETEENEL-SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 386 ~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 458 (470)
..|...|...- ..........+|..|...|++++|+.+|+.+....... ..+...+..|+...|+.+..+.+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34444444322 23333456689999999999999999999997654322 567788889999999988877765
Q ss_pred HH
Q 012143 459 EK 460 (470)
Q Consensus 459 ~~ 460 (470)
-+
T Consensus 242 le 243 (247)
T PF11817_consen 242 LE 243 (247)
T ss_pred HH
Confidence 43
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.34 E-value=1.5 Score=25.48 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 293 ANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 293 ~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
+.+|.+|..+|+.+.|...++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 387
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=87.23 E-value=21 Score=31.68 Aligned_cols=87 Identities=13% Similarity=-0.068 Sum_probs=41.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHhcc-----hhhhhHh---hHHHHHHHhccHHH--HHHHHHHHHhcCCCcHHHHHHHHH
Q 012143 374 GFAAVQKTHHEVAAAFETEENELSK-----MEECAGA---GESAFLDQASAVNV--AKECLLAALKADPKAAHIWANLAN 443 (470)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~---~l~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~la~ 443 (470)
.-|..+....+|..|...|-.+... .+..+.. .+-.|-...+..++ ++-.-+.+++....+.++....+.
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAe 293 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAE 293 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHH
Confidence 3455555666777777776664441 1112211 11112223333333 233334455555555666666666
Q ss_pred HHHH--cCChHHHHHHHHH
Q 012143 444 AYYL--TGDHRSSGKCLEK 460 (470)
Q Consensus 444 ~~~~--~g~~~~A~~~~~~ 460 (470)
.+.. +.+++.|+..|+.
T Consensus 294 A~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 294 AFGNRSLKDFEKALADYKK 312 (411)
T ss_pred HhcCCcHHHHHHHHHHhHH
Confidence 6532 3455555555554
No 388
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.17 E-value=14 Score=30.44 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=57.7
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 236 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 236 (470)
..-+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-++.|+...-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 3456778899999999999999999999999999999999999999999999999999987643
No 389
>PF12854 PPR_1: PPR repeat
Probab=87.11 E-value=2.1 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
...|..+...+.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44555666666666666666666554
No 390
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.02 E-value=29 Score=33.21 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=109.7
Q ss_pred hhcChhhHHHHHHHHHHh------------CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHH
Q 012143 53 REEKVSSLKTGLVHVARK------------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120 (470)
Q Consensus 53 ~~~~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 120 (470)
....|+++...|.-+... .|-+.+.+..++.+...+|+.+-|....++++=....
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~------------- 316 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDR------------- 316 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH-------------
Confidence 456678888888766543 3566778999999999999999999999888753210
Q ss_pred HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch---HHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 012143 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA---VVWNTLGLILLKSGRLQSSISVLSSLLAVDP 197 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 197 (470)
++...-... .|.. +.-=..|.|- .+++..-..+.+.|-+..|.++++-.+.++|
T Consensus 317 --a~hp~F~~~--sg~c-------------------RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp 373 (665)
T KOG2422|consen 317 --ALHPNFIPF--SGNC-------------------RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDP 373 (665)
T ss_pred --Hhccccccc--cccc-------------------cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 011100000 0000 0000123332 2344445566788999999999999999999
Q ss_pred C-ChHHHHHHHHHHH-HcCCHHHHHHHHHHH-----HhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC-
Q 012143 198 N-NCDCIGNLGIAYF-QSGDMEQSAKCFQDL-----ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS- 269 (470)
Q Consensus 198 ~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~-----l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 269 (470)
. +|-+...+..+|. +..+|.=-++.++.. +..-|+... -..++..+..+ ..
T Consensus 374 ~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~--------------------~~~ 432 (665)
T KOG2422|consen 374 SEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRK--------------------NEE 432 (665)
T ss_pred cCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhc--------------------CCh
Confidence 8 8877776666664 455666566665554 233454432 23445555421 22
Q ss_pred -CHHHHHHHHHHHHhcCCC
Q 012143 270 -AVNVAKECLLAALKADPK 287 (470)
Q Consensus 270 -~~~~A~~~~~~~~~~~p~ 287 (470)
.-..|...+.+|+...|.
T Consensus 433 ~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 433 DDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhHHHHHHHHHHHHHhCcH
Confidence 256788888888888773
No 391
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.91 E-value=11 Score=37.13 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=106.8
Q ss_pred ChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHH---hhhccccccccCCCccccccCcccHHH
Q 012143 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQI---HHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
.++.-..+-..|....+|+.-+.+.+..-.+ |+....+.. .+..+.++... -+.|+-++
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i----------P~t~~vve~~nv~f~YaFALNRR--------Nr~GDRak 261 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI----------PDTLKVVETHNVRFHYAFALNRR--------NRPGDRAK 261 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC----------cchhhhhccCceEEEeeehhccc--------CCCccHHH
Confidence 3556667777777788888777776655443 322222222 22333333332 35588999
Q ss_pred HHHHHHHhhhcC-ccchHHHHHHHHHHHH---------cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC-HHHH
Q 012143 151 ILSKLKESMQSD-TRQAVVWNTLGLILLK---------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQS 219 (470)
Q Consensus 151 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A 219 (470)
|+...-.+++.. |-.++.+...|.+|-. .+..+.|+.+|+++++..|.... =.+++.++...|+ ++..
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENS 340 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccch
Confidence 999988887754 4556777777777754 35678899999999999987432 2455555555543 3333
Q ss_pred HHHHHHHHhhCC-----CChH---HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 220 AKCFQDLILKDQ-----NHPA---ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 220 ~~~~~~~l~~~p-----~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
.+.-.-.+.++. .... .+...|..+. +-.-.+++.+|+..-+...++.|-....
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~------------------asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDVATYFE------------------ASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhh------------------hhhhccCHHHHHHHHHHHhccCCceehH
Confidence 333222222211 1111 1111111111 1113678888888888888887764433
Q ss_pred HHHHHHH
Q 012143 292 WANLANA 298 (470)
Q Consensus 292 ~~~la~~ 298 (470)
-..+..+
T Consensus 403 kS~meni 409 (1226)
T KOG4279|consen 403 KSTMENI 409 (1226)
T ss_pred HHHHHHH
Confidence 3334333
No 392
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=86.16 E-value=1.4 Score=38.67 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.....+++.+-...+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++......+..+
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 344555788888899999999988888888888899999999999999999999999999999999888765555444
No 393
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.53 E-value=5.8 Score=37.82 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=57.4
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--------CCChHHHHHHH------
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD--------PNNCDCIGNLG------ 207 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la------ 207 (470)
.++.|+++.|.++..++ ++..-|..||.+....|++..|.++|.++-... ..+.+.+..+|
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 45778888888876654 556789999999999999999999999986542 23344344343
Q ss_pred -------HHHHHcCCHHHHHHHHHHH
Q 012143 208 -------IAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 208 -------~~~~~~g~~~~A~~~~~~~ 226 (470)
.+|+..|+++++.+.+...
T Consensus 722 g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cccchHHHHHHHcCCHHHHHHHHHhc
Confidence 3556677777777766554
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.16 E-value=20 Score=33.13 Aligned_cols=57 Identities=7% Similarity=-0.124 Sum_probs=45.1
Q ss_pred hhhHHHhcCCHHHHHHHHHHHH-------hc-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 261 EGACLDQASAVNVAKECLLAAL-------KA-DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~-------~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
+.+++.-.|+|..|++.++-.- .. .+-...+++.+|-+|..+++|.+|++.|..++-
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778999999999887431 11 122567889999999999999999999998874
No 395
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.43 E-value=32 Score=31.36 Aligned_cols=66 Identities=11% Similarity=-0.109 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhcc------hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 369 PIAWAGFAAVQKTHHEVAAAFETEENELSK------MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
+...+.+-..|...+.++.|-....+..-| ......+.+|.+..-.++|..|.++|-+|+...|++
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 344555666667777777777666664322 222345567777777777777777777777777764
No 396
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.35 E-value=20 Score=33.03 Aligned_cols=59 Identities=14% Similarity=-0.048 Sum_probs=40.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHH-Hhc---------chhhhhHhhHHHHHHHhccHHHHHHHHHHHHh
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEEN-ELS---------KMEECAGAGESAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~-~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 429 (470)
....+..++.-.|+|..|++.... .++ +.....++.+|-+|..+++|.+|+..|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777778888888877665 111 22224567788888888888888888877663
No 397
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.55 E-value=28 Score=29.89 Aligned_cols=55 Identities=11% Similarity=-0.072 Sum_probs=37.6
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+|..|...|++++|+++|+.+...... ...+...+..|+...|+.+..+.+.-+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 466666888888888888888654332 3456667777888888877766655443
No 398
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.31 E-value=40 Score=31.61 Aligned_cols=113 Identities=15% Similarity=-0.050 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCcc---ccccCcccHHHHHH
Q 012143 77 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSL---DKELEPEELEEILS 153 (470)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~A~~ 153 (470)
....+|..++-.|+|+-|...|+.+.+-...+.... ..+.+....+.++...+.... ..-.-..-++.|..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~------~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~ 283 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWK------YLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYY 283 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHH------HHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHH
Confidence 456799999999999999999999887443322221 122222222222222221100 00001123455555
Q ss_pred HHHHh----hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 012143 154 KLKES----MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 154 ~~~~~----~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 195 (470)
.|.+. ....+.-..+....+.++...|.+.+|...+-+....
T Consensus 284 ~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 284 TYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 56552 1111223345556677777777777777666655543
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.55 E-value=5.4 Score=32.62 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 417 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 417 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+..++..++.+...| ++.++.+++.++...|+.++|.....++..++|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4556667777777777 577888888888899999999888888888887
No 400
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.36 E-value=17 Score=34.89 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 27 SKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
...+++|++.||... .-.+ ..+.|+++.|.+...+ .++..-|-.||......|++..|.++|.++-..
T Consensus 628 g~~e~AL~~s~D~d~----rFel-al~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 628 GMKEQALELSTDPDQ----RFEL-ALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred cchHhhhhcCCChhh----hhhh-hhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 445666777666553 2223 5566788888876654 466788999999999999999999999998764
No 401
>PF13041 PPR_2: PPR repeat family
Probab=82.18 E-value=4.2 Score=24.30 Aligned_cols=28 Identities=11% Similarity=-0.164 Sum_probs=19.3
Q ss_pred hHhhHHHHHHHhccHHHHHHHHHHHHhc
Q 012143 403 AGAGESAFLDQASAVNVAKECLLAALKA 430 (470)
Q Consensus 403 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 430 (470)
.|..+-..+.+.|++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4555666777777777777777777664
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.00 E-value=30 Score=31.95 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH--HHHHHHH--HHHHcCCHHHHHHHHHHHHhh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD--CIGNLGI--AYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~la~--~~~~~g~~~~A~~~~~~~l~~ 229 (470)
.....+...+..++|..|...+......-|.... .+..+.. -+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677888999999999999999885333333 4444444 446788999999999998764
No 403
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=81.49 E-value=56 Score=31.97 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=45.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------------CCCChHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------DPNNCDCIGNLG 207 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------~~~~~~~~~~la 207 (470)
++..|.+++|...---.+. ..-|..++.-....=+++-|.+.|.++-.+ ....| --..+|
T Consensus 566 ~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA 639 (1081)
T KOG1538|consen 566 YIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLA 639 (1081)
T ss_pred hhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHH
Confidence 4566666666543211111 112455565555556677777777665322 11112 235677
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 012143 208 IAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~ 226 (470)
.++.-.|++.+|.+.|.+.
T Consensus 640 ~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHhhhhHHHHHHHHHHc
Confidence 7888889999998888764
No 404
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=81.26 E-value=14 Score=33.41 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 012143 417 VNVAKECLLAALKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 417 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 450 (470)
+..|+.++++|.. .++|+.|..+|.++..+|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 6788888888876 4667888888888877775
No 405
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.13 E-value=3.9 Score=27.09 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=10.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHH
Q 012143 407 ESAFLDQASAVNVAKECLLAAL 428 (470)
Q Consensus 407 l~~~~~~~~~~~~A~~~~~~al 428 (470)
.|.-+-..|++.+|+.+|++++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3334444445555555554443
No 406
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=80.53 E-value=28 Score=27.87 Aligned_cols=167 Identities=14% Similarity=0.191 Sum_probs=103.8
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHH-----HcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-----C
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILL-----KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-----G 214 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----g 214 (470)
+.+|++|..+|..--..+ ..+...+.+|..++ ..+++..|+..|..+-. .+.+.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 356788888887766544 34666667766554 34678999999998866 56788888888887642 2
Q ss_pred --CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc---ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 012143 215 --DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---GAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 215 --~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 289 (470)
+..+|..++.++-.++ +..+.+.|...++........ ..+.-...+..+.-..+.+.|.++--++-+++ ++
T Consensus 125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~ 200 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IP 200 (248)
T ss_pred CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--Ch
Confidence 3778999999987654 566667777776643222111 11222334445555667777777777776653 35
Q ss_pred HHHHHHHHHHHHc----CChhHHHHHHHHHHhc
Q 012143 290 HIWANLANAYYLT----GDHRSSGKCLEKAAKL 318 (470)
Q Consensus 290 ~~~~~la~~~~~~----g~~~~A~~~~~~a~~~ 318 (470)
.+.-++.+.|..- ++-++|..+-.++.++
T Consensus 201 ~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 201 QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 5555665555331 2345565555555543
No 407
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.35 E-value=38 Score=29.32 Aligned_cols=81 Identities=14% Similarity=-0.002 Sum_probs=51.4
Q ss_pred CCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHH----HHHHHhcCCCcHHHHH
Q 012143 364 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKEC----LLAALKADPKAAHIWA 439 (470)
Q Consensus 364 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~al~~~p~~~~~~~ 439 (470)
....+|..+..+|..+.+.+++.+|...+-..-+ .++... +.-..+-.|...+.+.
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~--------------------~~~~~~~~ll~~~~~~~~~~e~dlfi 144 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD--------------------PSAFAYVMLLEEWSTKGYPSEADLFI 144 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H--------------------HHHHHHHHHHHHHHHHTSS--HHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC--------------------hhHHHHHHHHHHHHHhcCCcchhHHH
Confidence 3446788999999999999999888766543221 222111 1222345667777777
Q ss_pred HHHHH-HHHcCChHHHHHHHHHHHHh
Q 012143 440 NLANA-YYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 440 ~la~~-~~~~g~~~~A~~~~~~al~~ 464 (470)
..|.+ |...|+...|...+....+.
T Consensus 145 ~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 145 ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77765 57789999999988887776
No 408
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=80.34 E-value=5 Score=21.21 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 438 WANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 438 ~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
|..+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555666666665555544
No 409
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.98 E-value=43 Score=29.75 Aligned_cols=170 Identities=15% Similarity=0.063 Sum_probs=112.3
Q ss_pred hhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC--------------------------ChhHHHHHHHHHHHHHh
Q 012143 53 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG--------------------------QPLKAVSSYEKAEEILL 106 (470)
Q Consensus 53 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--------------------------~~~~A~~~~~~al~~~~ 106 (470)
..+-..+|+..=.-...+.|..|+++-.++.+.++.. -++++...+.+++....
T Consensus 208 ra~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~ 287 (415)
T COG4941 208 RADLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR 287 (415)
T ss_pred cchHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 3344577888777788889999999888888776542 24577777777776431
Q ss_pred hhhcccchhhh-HHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHH
Q 012143 107 RCEADIARPEL-LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSS 185 (470)
Q Consensus 107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 185 (470)
- -|.. ...+...+..+. .-..-+|..-..+|+-.....|+ |.+-.+.+.......-...+
T Consensus 288 p------GPYqlqAAIaa~HA~a~------------~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 288 P------GPYQLQAAIAALHARAR------------RAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred C------ChHHHHHHHHHHHHhhc------------ccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhH
Confidence 0 0111 111111222221 12334677777777777776665 55566777777777677778
Q ss_pred HHHHHHHhhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 186 ISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 186 ~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+...+-.... -......+...|..+.++|+.++|...|++++.+.++..+..+...
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 8777766554 2234557778899999999999999999999999888776654433
No 410
>PF13041 PPR_2: PPR repeat family
Probab=79.94 E-value=10 Score=22.55 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
...|..+-..+.+.|++++|.+.|++..+..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 5667778888888888888888888887653
No 411
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.78 E-value=56 Score=30.97 Aligned_cols=76 Identities=17% Similarity=0.030 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
..+..+-.++...-.+.--...+.+.+... .+..++..++.+|... ..++=...+++.++.+-++...-..++..|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334444444444444444444455555443 2344556666666555 344555555555555555544444444444
No 412
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=79.61 E-value=30 Score=27.69 Aligned_cols=196 Identities=9% Similarity=0.007 Sum_probs=109.1
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCCh
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-----TGDH 305 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-----~g~~ 305 (470)
...|+....|+..+.. -..++++|..+|..--..+. .+...+.+|..++. .++.
T Consensus 31 EK~Pe~C~lLgdYlEg--------------------i~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l 89 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEG--------------------IQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASL 89 (248)
T ss_pred cCCchHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCH
Confidence 4567777777777764 46788999998887655333 46666666655442 3567
Q ss_pred hHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccH
Q 012143 306 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEV 385 (470)
Q Consensus 306 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (470)
..|++.|+.+-.. +.+.+...+++......... +.......+.+.+.+.... .+..+-+.+...+..-.
T Consensus 90 ~~a~r~~~~aC~~--n~~~aC~~~gLl~~~g~~~r-~~dpd~~Ka~~y~traCdl------~~~~aCf~LS~m~~~g~-- 158 (248)
T KOG4014|consen 90 SKAIRPMKIACDA--NIPQACRYLGLLHWNGEKDR-KADPDSEKAERYMTRACDL------EDGEACFLLSTMYMGGK-- 158 (248)
T ss_pred HHHHHHHHHHhcc--CCHHHHhhhhhhhccCcCCc-cCCCCcHHHHHHHHHhccC------CCchHHHHHHHHHhccc--
Confidence 8899999988764 34455555554333211100 0011111122222222211 22234444444443211
Q ss_pred HHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CChHHHHHHHHHH
Q 012143 386 AAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT----GDHRSSGKCLEKV 461 (470)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~a 461 (470)
++ +... .|... .-...+..+.-..+.+.|.++-.+|-++ +++.+..++.+.|..- .+.++|..+-++|
T Consensus 159 ~k----~~t~-ap~~g-~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA 230 (248)
T KOG4014|consen 159 EK----FKTN-APGEG-KPLDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRA 230 (248)
T ss_pred hh----hccc-CCCCC-CCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHH
Confidence 11 1110 11000 1112233455567889999999999887 4677888888887532 4678899999999
Q ss_pred HHhhc
Q 012143 462 LMVYC 466 (470)
Q Consensus 462 l~~~~ 466 (470)
.++..
T Consensus 231 ~e~~~ 235 (248)
T KOG4014|consen 231 KEIME 235 (248)
T ss_pred HHHHH
Confidence 88763
No 413
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=79.09 E-value=3.9 Score=21.03 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
|..+-..|.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455555555555555555543
No 414
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.93 E-value=33 Score=31.69 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=40.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchH--HHHH--HHHHHHHcCChHHHHHHHHHHhhc
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAV--VWNT--LGLILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~--l~~~~~~~~~~~~A~~~~~~a~~~ 195 (470)
.++.++|..|...+......-|.... .+.. .|..++..-++.+|.+.++..+..
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46788999999999999886343333 3334 455556788999999999998765
No 415
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.80 E-value=3.7 Score=21.15 Aligned_cols=26 Identities=12% Similarity=0.330 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
|..+-..|.+.|++++|...|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45566667777777777777766554
No 416
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=78.00 E-value=21 Score=26.87 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=36.0
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 410 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 410 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
++...|+-++--+.+.....-+..+|..+..+|..|.+.|+..+|.+.+.+|-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4455666666666666665555567888999999999999999999988888654
No 417
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=77.23 E-value=8.2 Score=29.52 Aligned_cols=50 Identities=24% Similarity=0.115 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 215 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 215 (470)
.+.....+...+..|++.-|....+.++..+|++..+...++.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45566677777788888888888888888888888888777777766654
No 418
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.98 E-value=49 Score=28.69 Aligned_cols=202 Identities=13% Similarity=0.143 Sum_probs=106.2
Q ss_pred hhhhcChhhHHHHHHHHHHhC----C----CChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHH
Q 012143 51 SSREEKVSSLKTGLVHVARKM----P----KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~----p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 122 (470)
....+++++|+..|.+++... . ....+...++.+|...|++..--+......+...+. ..|......+
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f----tk~k~~Kiir 88 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF----TKPKITKIIR 88 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh----cchhHHHHHH
Confidence 445556666666666665431 1 112356678888888887765444333322221110 0111111111
Q ss_pred HhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHhhc-
Q 012143 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAV- 195 (470)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 195 (470)
..... + -.....++.-+..+...++-.... ...-..+..++...|.|.+|+......+..
T Consensus 89 tLiek---f----------~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~El 155 (421)
T COG5159 89 TLIEK---F----------PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHEL 155 (421)
T ss_pred HHHHh---c----------CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 11000 0 112233455555555444322111 112335678889999999999887766542
Q ss_pred -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhc
Q 012143 196 -----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQA 268 (470)
Q Consensus 196 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (470)
.|.-..++..-..+|....+..++...+..+-... .-.|+-...-..+. -|...+..
T Consensus 156 Kk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~----------------sGIlhcdd 219 (421)
T COG5159 156 KKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLL----------------SGILHCDD 219 (421)
T ss_pred HhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHh----------------ccceeecc
Confidence 34445677777888888888888877776654331 11222111111111 24455577
Q ss_pred CCHHHHHHHHHHHHhcC
Q 012143 269 SAVNVAKECLLAALKAD 285 (470)
Q Consensus 269 ~~~~~A~~~~~~~~~~~ 285 (470)
.+|.-|..+|-++++-.
T Consensus 220 ~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 220 RDYKTASSYFIEALEGF 236 (421)
T ss_pred ccchhHHHHHHHHHhcc
Confidence 88899999888887743
No 419
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=76.41 E-value=5.4 Score=35.31 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=40.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
+.+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++.....
T Consensus 287 k~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 287 KVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred cccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 4556666666666666666666777777777777777777777777777777776654433
No 420
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=52 Score=28.44 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=111.8
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHH--------cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc--CCHHH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLK--------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS--GDMEQ 218 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--g~~~~ 218 (470)
..|++.=...+..+|....+|...-.+... .--++.-++.+..+++-+|++...|...-.++... ..+..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 456666667777777776666665555443 12345667788899999999999998888777654 66888
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH---
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL--- 295 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l--- 295 (470)
-....++.+..+|.|...|...-.+... +.-...-..+..-.++-..++..++.+..+|...
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~---------------ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~ 193 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRT---------------IEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIW 193 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeec---------------chhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHH
Confidence 8888899999999988777544333311 1111122334445666777888899999998877
Q ss_pred HHHHHHcCC------hhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 296 ANAYYLTGD------HRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 296 a~~~~~~g~------~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
-...+..|+ +++=+.+.-..+-.+|++..+|..+
T Consensus 194 ~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 194 IERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 333444554 3445566666777889988877644
No 421
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.90 E-value=95 Score=31.52 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=66.0
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHhhhcc
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~ 250 (470)
-.++.+...|+-|+..-+.- ..+++. ..++...|.-++..|++++|...|-+.+.. +|...-..+ .
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------L----- 408 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------L----- 408 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------c-----
Confidence 34566667777777765542 223322 456778888889999999999999888753 232111100 1
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
...+..+-..+++...+..-.+..--..|-.+|.++++.++-.++.
T Consensus 409 ----------------daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 409 ----------------DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred ----------------CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHH
Confidence 1223334444555555554445555566677788888776654443
No 422
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.70 E-value=5.6 Score=26.43 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=13.8
Q ss_pred CcccHHHHHHHHHHhhhc
Q 012143 144 EPEELEEILSKLKESMQS 161 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~ 161 (470)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 457788898888888763
No 423
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.09 E-value=20 Score=30.78 Aligned_cols=139 Identities=16% Similarity=0.266 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHc--CChHHHHHHHHHHhhcCCCChHHHHHHHHHH------HHcCCHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKS--GRLQSSISVLSSLLAVDPNNCDCIGNLGIAY------FQSGDMEQS 219 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~------~~~g~~~~A 219 (470)
++.-+..+..++..+|.+..+|...-.++... .++..-....++.++.++.+-.+|...-.+. ..-.++..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 36667788999999999999988877776655 6688888889999999999877665544444 334445555
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 220 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 220 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
.++-..++..++.+..+|............ .|.+- ...-+++-+++.-.++-.+|++..+|..+-.+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~-----------~~~vi-sqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFN-----------RGDVI-SQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHh-----------hcccc-hHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 666677788899999998876433322100 01110 11125666777777888899988888766444
No 424
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.79 E-value=12 Score=30.62 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 271 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 271 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.+..++..++.++..|+ +.++..++.++...|+.++|.....++....|.
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44566677788888885 899999999999999999999999999999994
No 425
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.77 E-value=1e+02 Score=31.32 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=39.1
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 409 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 409 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.++.+..+++.++.+++.. .+++|..|..+-......+..+.-.+...++++...
T Consensus 713 ~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~ 767 (933)
T KOG2114|consen 713 LYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIE 767 (933)
T ss_pred HHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Confidence 3566777788888777753 455777888777777777777777777777776543
No 426
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.86 E-value=7.3 Score=26.00 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=12.3
Q ss_pred CcccHHHHHHHHHHhhh
Q 012143 144 EPEELEEILSKLKESMQ 160 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~ 160 (470)
+.|++++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45777888888777764
No 427
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=73.52 E-value=5.7 Score=26.44 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=15.1
Q ss_pred HHHHhccHHHHHHHHHHHHhc
Q 012143 410 FLDQASAVNVAKECLLAALKA 430 (470)
Q Consensus 410 ~~~~~~~~~~A~~~~~~al~~ 430 (470)
-.-..|+|++|..+|..+++.
T Consensus 15 e~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 15 EKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 445568888888888877763
No 428
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.62 E-value=12 Score=28.62 Aligned_cols=50 Identities=20% Similarity=0.019 Sum_probs=38.5
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 012143 404 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 404 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
....+......|++.-|.+....++..+|++..+...++.++.++|...+
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 33445567788999999999999999999999999999999988775443
No 429
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=72.40 E-value=22 Score=32.70 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=35.1
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 191 (470)
.+.+-+|+.+++.++..+|.+......+..+|...|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 35566777777777777777777777777777777777777777755
No 430
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=71.60 E-value=7.7 Score=25.26 Aligned_cols=15 Identities=33% Similarity=0.080 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHH
Q 012143 91 PLKAVSSYEKAEEIL 105 (470)
Q Consensus 91 ~~~A~~~~~~al~~~ 105 (470)
++.|+.+..+|++.+
T Consensus 2 ~~~A~~~~~~Av~~D 16 (69)
T PF04212_consen 2 LDKAIELIKKAVEAD 16 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357888888888764
No 431
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=71.51 E-value=8.6 Score=32.18 Aligned_cols=93 Identities=9% Similarity=0.106 Sum_probs=56.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchH------------HHHHHHHHHHHcCChHHH--HHHHHHHhhc--CCCC--hHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAV------------VWNTLGLILLKSGRLQSS--ISVLSSLLAV--DPNN--CDCI 203 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~l~~~~~~~~~~~~A--~~~~~~a~~~--~~~~--~~~~ 203 (470)
.+..|+++.|+.+..-+++.+-.-|+ -....+......|+.-+. ...+.....- -|+. ...+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 56889999999999999986532221 222334444555553221 1122222110 1222 3356
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCh
Q 012143 204 GNLGIAYF---------QSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 204 ~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
...|..+. ..++...|+.++++++.++|+..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 66777663 45678899999999999998754
No 432
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=71.26 E-value=92 Score=29.27 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=24.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 441 LANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 441 la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
-|.-|.+.|....|..+|.+|+.+|...
T Consensus 376 Ag~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 376 AGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 4567889999999999999999998643
No 433
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.52 E-value=9.8 Score=24.76 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=11.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHHh
Q 012143 407 ESAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 407 l~~~~~~~~~~~~A~~~~~~al~ 429 (470)
.|.-.-..|++++|+.+|.++++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444445555555555555443
No 434
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.67 E-value=14 Score=24.73 Aligned_cols=25 Identities=20% Similarity=-0.037 Sum_probs=16.6
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHHh
Q 012143 405 AGESAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 405 ~~l~~~~~~~~~~~~A~~~~~~al~ 429 (470)
...|.-.-..|+|++|+.+|..+++
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455556667777777777777765
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.61 E-value=1.5e+02 Score=30.89 Aligned_cols=176 Identities=14% Similarity=0.041 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH--HHHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKD----QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV--NVAK 275 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~ 275 (470)
-+..|+.+|...|+.++|++.+.....-. +.....+......+. ..+.. +-..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~---------------------~l~~~~~~Li~ 564 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLK---------------------KLGAENLDLIL 564 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHH---------------------HhcccchhHHH
Confidence 46788999999999999999999987632 222222222222221 12222 3333
Q ss_pred HHHHHHHhcCCCCHH-----------HHH--HHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHhhhcc
Q 012143 276 ECLLAALKADPKAAH-----------IWA--NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY-AVAVSRIKDAERSQ 341 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~-----------~~~--~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~-~l~~~~~~~~~~~~ 341 (470)
++-.=.+..+|.... .-. ..-.-|......+-++.+++.++.........+. .+............
T Consensus 565 ~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~ 644 (877)
T KOG2063|consen 565 EYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQA 644 (877)
T ss_pred HHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhcc
Confidence 333333333332100 000 1111244566777788888888876655443333 22222222222000
Q ss_pred ---CchHHhhhh--HHHHHHHhhcCCCCCC-------CcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 342 ---EPTEQLSWA--GNEMASILREGDPVQI-------EPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 342 ---~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
...+...+. .+.....+.......| .....|...+.++.+.|+.++|+..+...++.
T Consensus 645 ~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d 713 (877)
T KOG2063|consen 645 STDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDD 713 (877)
T ss_pred CchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 000011111 1112222222222111 22456778888888999999998887665553
No 436
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.59 E-value=1.1e+02 Score=30.68 Aligned_cols=184 Identities=16% Similarity=0.118 Sum_probs=104.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH------HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA------LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN 272 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (470)
.++...++-..|....+|+.-++..+..- .-|+.... .+.++..+-.+ .+-|+-+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~YaFALNRR------------------Nr~GDRa 260 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYAFALNRR------------------NRPGDRA 260 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEeeehhccc------------------CCCccHH
Confidence 46777888888999999988777766543 33432211 11122222111 1578889
Q ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHH---------cCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccC
Q 012143 273 VAKECLLAALKAD-PKAAHIWANLANAYYL---------TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQE 342 (470)
Q Consensus 273 ~A~~~~~~~~~~~-p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 342 (470)
+|+...-.+++.. |-.++.+...|++|-. .+..+.|+.+|+++++..|...... +++.. +.......+
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGI-N~atL-L~aaG~~Fe 338 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGI-NLATL-LRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccc-cHHHH-HHHhhhhcc
Confidence 9999888888764 4466777777777754 3556789999999999999753321 12211 111112222
Q ss_pred chHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHH
Q 012143 343 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKE 422 (470)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 422 (470)
....+. .+-..++.+..+.|..++-.....-+ .++. +-.-.+++.+|+.
T Consensus 339 ns~Elq---------------------~IgmkLn~LlgrKG~leklq~YWdV~-------~y~~---asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 339 NSLELQ---------------------QIGMKLNSLLGRKGALEKLQEYWDVA-------TYFE---ASVLANDYQKAIQ 387 (1226)
T ss_pred chHHHH---------------------HHHHHHHHHhhccchHHHHHHHHhHH-------Hhhh---hhhhccCHHHHHH
Confidence 221111 23334555555556554443332210 0110 2224567888888
Q ss_pred HHHHHHhcCCCc
Q 012143 423 CLLAALKADPKA 434 (470)
Q Consensus 423 ~~~~al~~~p~~ 434 (470)
.-++..++.|-.
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 888888887654
No 437
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=69.51 E-value=15 Score=19.32 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 291 IWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 291 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
.|..+..++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466777788888888888888887665
No 438
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=67.24 E-value=13 Score=19.87 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHc----CChHHHHHHHHHHHHh
Q 012143 436 HIWANLANAYYLT----GDHRSSGKCLEKVLMV 464 (470)
Q Consensus 436 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 464 (470)
.+.+.+|.+|..- .+..+|..+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4567777776532 3778888888887653
No 439
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.12 E-value=53 Score=24.85 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=19.1
Q ss_pred HcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 178 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 178 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
.+|+-++-.+.+....+-+..+|..+..+|.+|.+.|+..+|-+.+.++-
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33443333344444333333344444445555555555555544444443
No 440
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=65.65 E-value=42 Score=30.87 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 180 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
+..-+|+..++.++..+|.+......+..+|..+|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 44678899999999999999999999999999999999999999764
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.39 E-value=2e+02 Score=30.80 Aligned_cols=156 Identities=18% Similarity=0.228 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc-------------cchhh----hHHHHHHhhhccccccccCCC
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEAD-------------IARPE----LLSLVQIHHAQCLLPESSGDN 137 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~----~~~~~~~~~~~~~~~~~~~~~ 137 (470)
+...+.+|.+|...|+..+|+.+|.+|..-..+.+.. ....+ .+.....+...-.++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rll------ 993 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLL------ 993 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHH------
Confidence 5567788888888888888888888887642221100 00000 000001111111111
Q ss_pred ccccccCcccHHHHHHHHHHhhhcCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHH
Q 012143 138 SLDKELEPEELEEILSKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAY 210 (470)
Q Consensus 138 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~ 210 (470)
-+-+-.+.+++...++++.-|++ +.....+-.-+...|.+.+|.+.+- .+|+. .+++..+..++
T Consensus 994 -----e~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRqlvivL 1064 (1480)
T KOG4521|consen 994 -----EEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLVIVL 1064 (1480)
T ss_pred -----HHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHHHHH
Confidence 12233466666666666654333 3344455566677788888876543 35553 34677777788
Q ss_pred HHcCCHHH------------HHH-HHHHHHhhCCCChHHHHHHHHHHH
Q 012143 211 FQSGDMEQ------------SAK-CFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 211 ~~~g~~~~------------A~~-~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+..|.++. -.. .++.+-+..|....-++.+-.++.
T Consensus 1065 fecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh 1112 (1480)
T KOG4521|consen 1065 FECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFH 1112 (1480)
T ss_pred HhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHH
Confidence 88776543 222 344444445555555555555544
No 442
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=65.36 E-value=11 Score=25.32 Aligned_cols=17 Identities=24% Similarity=0.042 Sum_probs=11.2
Q ss_pred CChhHHHHHHHHHHHHH
Q 012143 89 GQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 89 g~~~~A~~~~~~al~~~ 105 (470)
+.|+.|..+..+++..+
T Consensus 3 ~~~~~A~~~I~kaL~~d 19 (79)
T cd02679 3 GYYKQAFEEISKALRAD 19 (79)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 34667777777777653
No 443
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=64.67 E-value=18 Score=24.25 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=12.8
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHh
Q 012143 406 GESAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 406 ~l~~~~~~~~~~~~A~~~~~~al~ 429 (470)
..|.-.-..|++++|+.+|.++++
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444555556666665555544
No 444
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.50 E-value=98 Score=27.02 Aligned_cols=103 Identities=11% Similarity=-0.005 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHHHhccccHHHHHHHHHHHhcch-----hhhh---HhhHHHHHHHhccHHHHHHHHHHHHhcCCCc---H
Q 012143 367 EPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-----EECA---GAGESAFLDQASAVNVAKECLLAALKADPKA---A 435 (470)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~ 435 (470)
...++|.++|..|...++.+.+.+...+.+... ..+. ...+|.+|....-.++.++.....++..-+- -
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 346799999999999999999999888754422 1222 2366666666666778888887777765432 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhccCC
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSN 469 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 469 (470)
..-...|.......++.+|...+...+.-+.|+.
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~E 226 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPTFESSE 226 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhccccccc
Confidence 2223456666677788999998888887776654
No 445
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=64.45 E-value=17 Score=19.94 Aligned_cols=28 Identities=29% Similarity=0.193 Sum_probs=16.2
Q ss_pred HHHHHHH--HHHHHcC-----ChHHHHHHHHHHHH
Q 012143 436 HIWANLA--NAYYLTG-----DHRSSGKCLEKVLM 463 (470)
Q Consensus 436 ~~~~~la--~~~~~~g-----~~~~A~~~~~~al~ 463 (470)
.+.+.+| .++..-. |+++|..+|+++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4566666 4333322 35777777777655
No 446
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=64.35 E-value=40 Score=22.48 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=16.4
Q ss_pred HHHHhCChhHHHHHHHHHHHHH
Q 012143 84 MYQRLGQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 84 ~~~~~g~~~~A~~~~~~al~~~ 105 (470)
-.-..|++++|..+|..+++..
T Consensus 15 e~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 15 EKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 3344588888999888888763
No 447
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=64.05 E-value=28 Score=29.29 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=25.8
Q ss_pred HHHHHHHHHHH---------HcCChHHHHHHHHHHhhcCCCC
Q 012143 167 VVWNTLGLILL---------KSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 167 ~~~~~l~~~~~---------~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
..+...|..+. ..++...|+.++++++.++|+.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 35556777773 4568889999999999999875
No 448
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.92 E-value=1e+02 Score=31.54 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc--cchhhhHHHHHHh--hhccccccccCCCccccccCcccHHHH--H
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEAD--IARPELLSLVQIH--HAQCLLPESSGDNSLDKELEPEELEEI--L 152 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A--~ 152 (470)
...|.-....|++.+|++.|+.++-.-|---.. ........+..+. +..|.......+ -+..+..+++ +
T Consensus 995 l~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr-----~l~~~~~~~~~El 1069 (1202)
T KOG0292|consen 995 LQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERR-----KLKKPNLEQQLEL 1069 (1202)
T ss_pred HHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeec-----ccCCchHHHHHHH
Confidence 345666677899999999999998764421000 0011111111111 122222111111 2344555555 3
Q ss_pred HHHHHhhhcCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHH
Q 012143 153 SKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCI 203 (470)
Q Consensus 153 ~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 203 (470)
..|-.-..+.|.+ ..++..--.++++.+++..|-....+.+++.|..+.+.
T Consensus 1070 AaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1070 AAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 3333334445543 23444445567788888888888888888877765543
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.28 E-value=61 Score=24.27 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=21.7
Q ss_pred HHHHHHHHhhh--cCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 150 EILSKLKESMQ--SDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 150 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
.+..+|..+.. +....+..|...|..+...|++++|.++|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 44444444433 23334455555556666666666666665554
No 450
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.26 E-value=1.1e+02 Score=27.16 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCChHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDLI--LKDQNHPAA 236 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~ 236 (470)
......+|.+|.+.++|..|...+.-.-.-.... ...+..+|.+|...++..+|..+..++- ..+..+...
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Q ss_pred HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 237 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
...+-.++ +.++...+++-+|...|-+...
T Consensus 183 qie~kvc~-----------------ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 183 QIEYKVCY-----------------ARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
No 451
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.26 E-value=67 Score=24.38 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=26.8
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 012143 177 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 177 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (470)
...+.+...+.+++.++..++.++..+..+..+|... +..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445666666666666666665566666666666543 2344444444
No 452
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=62.18 E-value=17 Score=24.23 Aligned_cols=15 Identities=20% Similarity=-0.071 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHH
Q 012143 91 PLKAVSSYEKAEEIL 105 (470)
Q Consensus 91 ~~~A~~~~~~al~~~ 105 (470)
.++|+.+..+|++.+
T Consensus 3 l~~Ai~lv~~Av~~D 17 (75)
T cd02684 3 LEKAIALVVQAVKKD 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888887764
No 453
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=61.74 E-value=51 Score=24.41 Aligned_cols=67 Identities=18% Similarity=0.077 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHH----Hhh
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGIAYFQSGDMEQSAKCFQDL----ILK 229 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~----l~~ 229 (470)
+..+|...++.+++-.++-.|++|+.+..+- .....++|..+..+|+.+=.+++++-+ +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888889999999999999988752211 235678999999999999999998754 455
Q ss_pred CCCChH
Q 012143 230 DQNHPA 235 (470)
Q Consensus 230 ~p~~~~ 235 (470)
-|..+.
T Consensus 84 iPQCp~ 89 (140)
T PF10952_consen 84 IPQCPN 89 (140)
T ss_pred ccCCCC
Confidence 665543
No 454
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.67 E-value=37 Score=23.94 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 435 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 435 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|..+..||.+|...|+.+.|..-|+.--.++|.|
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 3445555555555555555555555555555443
No 455
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=61.38 E-value=1.2e+02 Score=27.03 Aligned_cols=101 Identities=9% Similarity=-0.061 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh-----hh---HhhHHHHHHHhccHHHHHHHHHHHHhcCCCc---HH
Q 012143 368 PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE-----CA---GAGESAFLDQASAVNVAKECLLAALKADPKA---AH 436 (470)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~---~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 436 (470)
..+++...+..|.+.|+.+.|.+.+.+.....-. +. ...+|..|....-..+-++..+..++..-+- -.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 3568999999999999999999998885442211 22 3356656655554555555555555544321 11
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
.-...|.-.....++.+|...|-.++.-+.|.
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 22334455556678888888887777666554
No 456
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=61.20 E-value=1.3e+02 Score=27.67 Aligned_cols=50 Identities=6% Similarity=-0.015 Sum_probs=33.0
Q ss_pred ccCcccHHHHHHHHHHhhhcCcc-----chHHHHHH--HHHHHHcCChHHHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTR-----QAVVWNTL--GLILLKSGRLQSSISVLSS 191 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l--~~~~~~~~~~~~A~~~~~~ 191 (470)
.++.++|..|...|..+....+. ....+..+ |..++..-++++|.+.+++
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45677888888888888876532 12233344 4444566778888888875
No 457
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=60.66 E-value=45 Score=32.45 Aligned_cols=78 Identities=6% Similarity=0.167 Sum_probs=59.4
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (470)
...++.+....+.-+..........+..+..+-..|..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344566776777666666566667777788888888889999999999888887 667777888888888777777776
No 458
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.35 E-value=2.4e+02 Score=30.19 Aligned_cols=166 Identities=11% Similarity=0.047 Sum_probs=85.7
Q ss_pred ccCcccHHHHHHHHHHhhhcCcc---------------------------c--hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTR---------------------------Q--AVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~---------------------------~--~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
++..|...+|+.+|.++...... . ...|...-.++...+-.+.+++.-.+|
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45666679999999888543211 0 112333445566667777777777777
Q ss_pred hhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHHHHHHHHhhhcccccccccchhhhhHH
Q 012143 193 LAVDPNN----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALINYAALLLCKYGSVLAGAGANTGEGACL 265 (470)
Q Consensus 193 ~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (470)
++.-|++ +.....+-.-+..+|.+-+|...+- .+|+... .+..+..++...+ .+-.++. +
T Consensus 1010 Ie~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRqlvivLfecg--------~l~~L~~-f 1076 (1480)
T KOG4521|consen 1010 IENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLVIVLFECG--------ELEALAT-F 1076 (1480)
T ss_pred HHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHhcc--------chHHHhh-C
Confidence 7764433 2233444444566788888765443 3454322 2233333333110 0000000 0
Q ss_pred HhcCCHHHHHH-HHHHHHhcCCC-CHHHHHHHHHHHHHcCChhHHHH-HHHHHHhcCC
Q 012143 266 DQASAVNVAKE-CLLAALKADPK-AAHIWANLANAYYLTGDHRSSGK-CLEKAAKLEP 320 (470)
Q Consensus 266 ~~~~~~~~A~~-~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~~~p 320 (470)
--.|-.++-.. +++.+-+..|- ....|..|-..+...+++.+|-. .|+.+.++..
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 01222334444 44455444444 34455555556778888887654 4666666543
No 459
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=59.72 E-value=39 Score=24.97 Aligned_cols=64 Identities=20% Similarity=0.117 Sum_probs=47.3
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCChhHHHHHHHHH----HhcCCC
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPK---------------AAHIWANLANAYYLTGDHRSSGKCLEKA----AKLEPN 321 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a----~~~~p~ 321 (470)
+|....+.+++-.++-.|++++.+..+ .+....+||..+..+|+.+-.+++++-| +.+-|.
T Consensus 7 lAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQ 86 (140)
T PF10952_consen 7 LADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQ 86 (140)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccC
Confidence 455556888888999999988865322 2345678999999999999999998654 556676
Q ss_pred ccc
Q 012143 322 CMS 324 (470)
Q Consensus 322 ~~~ 324 (470)
.+.
T Consensus 87 Cp~ 89 (140)
T PF10952_consen 87 CPN 89 (140)
T ss_pred CCC
Confidence 554
No 460
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=59.12 E-value=1.3e+02 Score=26.78 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
-.+++.+.|..|.+.|+-+.|.+.+.+..+..- +-.-....+|..|....-..+.++..+..++...+ ++- .
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD-WeR-r 180 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD-WER-R 180 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC-hhh-h
Confidence 367899999999999999999999988766422 12234566777777666566666666666554332 222 2
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
+.-.+|. |.......++.+|-..|..++.....
T Consensus 181 NRlKvY~----------------Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 181 NRLKVYQ----------------GLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhHHHHH----------------HHHHHHHHhHHHHHHHHHHHcccccc
Confidence 2222332 33344678899999999888766543
No 461
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=58.90 E-value=21 Score=23.72 Aligned_cols=15 Identities=33% Similarity=0.065 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHH
Q 012143 91 PLKAVSSYEKAEEIL 105 (470)
Q Consensus 91 ~~~A~~~~~~al~~~ 105 (470)
.+.|+.++.+|++.+
T Consensus 3 ~~~A~~l~~~Av~~D 17 (75)
T cd02678 3 LQKAIELVKKAIEED 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457788888887754
No 462
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=58.49 E-value=24 Score=23.76 Aligned_cols=20 Identities=20% Similarity=-0.012 Sum_probs=13.6
Q ss_pred HHcCChHHHHHHHHHHHHhh
Q 012143 446 YLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 446 ~~~g~~~~A~~~~~~al~~~ 465 (470)
-..|+.++|+.+|++++..+
T Consensus 19 dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 19 DEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred hhcCCHHHHHHHHHHHHHHH
Confidence 34467777777777777665
No 463
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.30 E-value=69 Score=29.40 Aligned_cols=104 Identities=16% Similarity=0.056 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.++..+|.-|...|+.+.|+++|-++-..... ....+.++..+-...|+|..-..+..++... |. ...++...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~---~~~~~~q~ 226 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST-PD---ANENLAQE 226 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-ch---hhhhHHHh
Confidence 46778999999999999999999996554333 3456788888888999999888888877653 20 00000000
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
.- +...-..|......++|..|..+|-.+..
T Consensus 227 v~---------~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 227 VP---------AKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred cC---------cchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 00 00011123333466789999888876643
No 464
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.14 E-value=75 Score=29.17 Aligned_cols=92 Identities=10% Similarity=-0.087 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhc-----chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC-------CC-cHH
Q 012143 370 IAWAGFAAVQKTHHEVAAAFETEENELS-----KMEECAGAGESAFLDQASAVNVAKECLLAALKAD-------PK-AAH 436 (470)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~-~~~ 436 (470)
.++..+|..|...|+++.|++.|.+..+ ......+.++-.+-...|+|..-..+..+|...- +. .+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4778899999999999999999998444 2222445566666677888877777776665541 00 123
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
+...-|.+...++++..|.++|-.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455566666777999999888654
No 465
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=56.91 E-value=29 Score=18.55 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 271 VNVAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 271 ~~~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
++.|..+|++.+...|+ +..|...|
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 56666667776666654 45554443
No 466
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=56.90 E-value=57 Score=21.87 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=30.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
.+...|.-.-..|++++|+..| .+|++.|..++...|+..
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y-------------------------~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCY-------------------------QEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHH-------------------------HHHHHHHHHHHhhCCCHH
Confidence 4455666777888999888874 678888888888887654
No 467
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=56.58 E-value=28 Score=18.14 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 012143 420 AKECLLAALKADPKAAHIWANLANAYYLT 448 (470)
Q Consensus 420 A~~~~~~al~~~p~~~~~~~~la~~~~~~ 448 (470)
.+++..+++..+|.+..+|..+-.+....
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46778889999999999998887776543
No 468
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=56.46 E-value=65 Score=28.08 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=66.2
Q ss_pred ccCcccHHHHHHHHHHhhhcCcc----chHHHHHHHHH--HHHcCC----hHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTR----QAVVWNTLGLI--LLKSGR----LQSSISVLSSLLAVDPNNCDCIGNLGIAYF 211 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~--~~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 211 (470)
++..++|++-...+.+......+ ... |+..-.. ...... ...-...++.-++..|++..++..+|..+.
T Consensus 10 LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~ 88 (277)
T PF13226_consen 10 LLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWV 88 (277)
T ss_pred HHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 45677888888888777643322 112 2211111 111111 123566777778889999998888887776
Q ss_pred Hc----------------------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 212 QS----------------------GDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 212 ~~----------------------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
.. .-.+.|...+.+++.++|....+...+..+-.
T Consensus 89 ~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~ 144 (277)
T PF13226_consen 89 HRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISA 144 (277)
T ss_pred HHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Confidence 42 13577888999999999999988777665544
No 469
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.76 E-value=63 Score=32.91 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=43.3
Q ss_pred ccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 012143 138 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 194 (470)
Q Consensus 138 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 194 (470)
.+...+..|+++.|++...+. ++++.|..||...+.+|+.+-|.-+|++.-.
T Consensus 649 RF~LaLe~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 649 RFELALECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred heeeehhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 344567889999999887765 6688999999999999999999999998543
No 470
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=55.71 E-value=21 Score=26.43 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 439 ANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 439 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
..+|..+...|++++|..+|-+|+.++++
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 45666666667777777777777776654
No 471
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=55.09 E-value=56 Score=24.45 Aligned_cols=38 Identities=11% Similarity=-0.036 Sum_probs=27.3
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012143 410 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 447 (470)
Q Consensus 410 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 447 (470)
.++..-+.+.|..+|+..++.+|++..++..+-...-.
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 44445567899999999999999998888777766543
No 472
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.54 E-value=35 Score=22.72 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=11.9
Q ss_pred HHHHHHHhccHHHHHHHHHHHHh
Q 012143 407 ESAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 407 l~~~~~~~~~~~~A~~~~~~al~ 429 (470)
.|...-..|++++|+.+|.++++
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555555544
No 473
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=54.48 E-value=2.6e+02 Score=28.66 Aligned_cols=256 Identities=13% Similarity=0.034 Sum_probs=154.5
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
+..+.+..+.- -...+.-+.-+..++.-+..++.+...+..|-.+....|++++-...-.++.++.|-++ ..+
T Consensus 78 sSe~~~ds~sD-~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~------~lW 150 (881)
T KOG0128|consen 78 SSEVSMDSDSD-SSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP------HLW 150 (881)
T ss_pred cCcccccccCC-ccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh------HHH
Confidence 33344444444 44455566667777777888899999999999999999999887777777777765532 111
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHH-------HHcCChHHHHHHHHH
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLIL-------LKSGRLQSSISVLSS 191 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-------~~~~~~~~A~~~~~~ 191 (470)
+.++.-.+... ..++..++...|++++... +.+..|...+... ...++++.-...|.+
T Consensus 151 -l~Wl~d~~~mt-------------~s~~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~r 215 (881)
T KOG0128|consen 151 -LEWLKDELSMT-------------QSEERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFER 215 (881)
T ss_pred -HHHHHHHHhhc-------------cCcchhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHH
Confidence 11111111111 2256688999999998744 4455555544443 444677888888888
Q ss_pred HhhcCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhH
Q 012143 192 LLAVDPN-------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264 (470)
Q Consensus 192 a~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 264 (470)
++..-.. ....+..+-..|...-..++-+..+.+.+... -+..+ .+.-+..... .-..
T Consensus 216 al~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~---~~~~~~~~sk-----------~h~~ 280 (881)
T KOG0128|consen 216 ALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDT---RGWDLSEQSK-----------AHVY 280 (881)
T ss_pred HHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhh---hHHHHHHHHh-----------cchH
Confidence 8874221 23345555666666666677777777777643 22211 1111110000 0000
Q ss_pred HHhcCCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 265 LDQASAVNVAK-------ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 265 ~~~~~~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
.....+++.|. ..+++.+...|.....|..+-......|+.-.-...+++++.-.+.+...|...+.
T Consensus 281 ~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~ 354 (881)
T KOG0128|consen 281 DVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGV 354 (881)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhh
Confidence 11233344444 34555555666666777888888888999888888899998887777777765543
No 474
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.69 E-value=86 Score=22.66 Aligned_cols=48 Identities=23% Similarity=0.097 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 215 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 215 (470)
.....|.+-...|++..|.+...++-+..+..+-.+..-+..-..+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344567777888999999999999877755555555555666666654
No 475
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.78 E-value=46 Score=33.23 Aligned_cols=96 Identities=9% Similarity=0.096 Sum_probs=71.9
Q ss_pred ccCcccHHHHHHHHHHhhhcCcc----chHHHHHHHHHHHH--cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC
Q 012143 142 ELEPEELEEILSKLKESMQSDTR----QAVVWNTLGLILLK--SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 215 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 215 (470)
.+..+++..+.--|..++..-|. ......+.+.+++. .|+|..++.-..-++...|....++...+.+|...+.
T Consensus 63 ~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k 142 (748)
T KOG4151|consen 63 LFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNK 142 (748)
T ss_pred HhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHH
Confidence 34556667776666666666663 23445566666655 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHHH
Q 012143 216 MEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 216 ~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
++-|++...-.....|.+..+.
T Consensus 143 ~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 143 LDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred HHHHHHHHHHHhcCCCCcchHH
Confidence 9999988777778888885443
No 476
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=51.02 E-value=1.7e+02 Score=25.60 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=73.5
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCC--ChHHHHHHHHHH---HHcCC----HHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAY---FQSGD----MEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~---~~~g~----~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
..+...++|++=...+.+......+ ..+..+..+... ..+.. ...-.+.++.-++..|++..++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4566778888887878777654222 111112222111 11211 12456777888889999999999999888
Q ss_pred Hhhhcccccc-cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 012143 245 LCKYGSVLAG-AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 306 (470)
....-...-. ......-........-.+.|...+.+++.++|....+...+-.+-...|..+
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 7531111000 0000001111112223466777777777778777777777776666666654
No 477
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=50.70 E-value=45 Score=22.14 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=11.9
Q ss_pred HHHHHHHhccHHHHHHHHHHHHh
Q 012143 407 ESAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 407 l~~~~~~~~~~~~A~~~~~~al~ 429 (470)
.|.-.-..|++++|+.+|.++++
T Consensus 12 ~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 12 KAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344455555555555555544
No 478
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=49.98 E-value=49 Score=19.03 Aligned_cols=32 Identities=25% Similarity=0.200 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 012143 423 CLLAALKADPKAAHIWANLANAYYLTGDHRSS 454 (470)
Q Consensus 423 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 454 (470)
.|..++-.+|++...+...|..+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46778888999999999999999999998655
No 479
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.06 E-value=40 Score=22.45 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=10.0
Q ss_pred HHHhccHHHHHHHHHHHHh
Q 012143 411 LDQASAVNVAKECLLAALK 429 (470)
Q Consensus 411 ~~~~~~~~~A~~~~~~al~ 429 (470)
--..|++++|+.+|..+++
T Consensus 16 eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred hhHhhhHHHHHHHHHHHHH
Confidence 3344555555555555544
No 480
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.47 E-value=1.8e+02 Score=27.17 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-----------CCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAV-----------DPNNCDCIGNLGIAYFQSGDM----------EQSAKCFQDLI 227 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~l 227 (470)
+...|.+.+....|++|+.++-.|-+. -.+.+..-..+.+||+.+.+. ..|.+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 445677888888999998888766442 223344555677888877653 23333333332
Q ss_pred h--------h-CCCChHH-HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 228 L--------K-DQNHPAA-LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 228 ~--------~-~p~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
. + .|..++- ++..-. +..|.+.+.+|+-++|.++++.+..
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~----------------LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLE----------------LLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHH----------------HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1 1 1222221 111111 1247888899999999999998754
No 481
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=48.33 E-value=51 Score=21.79 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=11.9
Q ss_pred HHHHHHhccHHHHHHHHHHHHh
Q 012143 408 SAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 408 ~~~~~~~~~~~~A~~~~~~al~ 429 (470)
|.-.-..|++++|+.+|..+++
T Consensus 13 Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 13 AVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455556666666665544
No 482
>PRK12798 chemotaxis protein; Reviewed
Probab=48.24 E-value=2.3e+02 Score=26.37 Aligned_cols=218 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCC-CcchhhhcccchhhhhcChhhHHHHHHHH--HHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHH
Q 012143 26 SSKMDSALEFGVD-ADGDQSGLGTSSSSREEKVSSLKTGLVHV--ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAE 102 (470)
Q Consensus 26 ~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 102 (470)
+..++..+..++. +...-...|.. .+-.|+-.++.+.+..+ ..+++.-.-......-..+...+..+|+.+|+.+-
T Consensus 97 P~vlr~L~~~d~~~~~d~~L~~g~l-aY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 97 PATLRKLLARDKLGNFDQRLADGAL-AYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred HHHHHHHHHcCCCChhhHHHHHHHH-HHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Q ss_pred HHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHc
Q 012143 103 EILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKS 179 (470)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~ 179 (470)
=..| ....+.+.....+.. .-+.|+.++...+..+.++..... ...+-.........
T Consensus 176 LlaP--------GTLvEEAALRRsi~l------------a~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~ 235 (421)
T PRK12798 176 LLAP--------GTLVEEAALRRSLFI------------AAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRL 235 (421)
T ss_pred HhCC--------chHHHHHHHHHhhHH------------HHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc
Q ss_pred CChHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccc
Q 012143 180 GRLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGAN 258 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (470)
++-..-...-.-.-.++|.. ...|..++..-.-.|+.+-|.-.-++++.+. .....-...+.+|.
T Consensus 236 ~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~-~~~~~~~~ra~LY~------------- 301 (421)
T PRK12798 236 DDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA-DPDSADAARARLYR------------- 301 (421)
T ss_pred cccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc-cCCCcchHHHHHHH-------------
Q ss_pred hhhhhHHHhcCCHHHHHHHHHHH
Q 012143 259 TGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
+....-..++++++..+.+.
T Consensus 302 ---aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 302 ---GAALVASDDAESALEELSQI 321 (421)
T ss_pred ---HHHccCcccHHHHHHHHhcC
No 483
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=47.55 E-value=49 Score=24.55 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=20.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCCh
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNC 200 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 200 (470)
.+|..+...|++++|..+|-+|+...|+-.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 467777777777777777777777766543
No 484
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.49 E-value=49 Score=33.06 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=82.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQ--SGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.-|..++..+++..|..-|..++.+-|.+ .....+.+.++.. .|++.+++..-.-++...|....++...+..|
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y 137 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY 137 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence 34777888889999888888888887743 3455666666654 56888888888888888888888777766555
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 307 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 307 (470)
. ..++++-|++.+.-.....|.++.+..............+-
T Consensus 138 ~---------------------al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d~ 179 (748)
T KOG4151|consen 138 E---------------------ALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKDL 179 (748)
T ss_pred H---------------------HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcCC
Confidence 5 46668888888777778888876665544444433333333
No 485
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.23 E-value=3e+02 Score=27.34 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=80.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCc------chhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDAD------GDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLM 84 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 84 (470)
.++.+++..+|..++ +.|..++..-|.+. .....+..+ +....+.+.|.+.++++-+.+|.++-.-...-.+
T Consensus 360 ~A~~~F~~~~Y~~s~-~~y~~Sl~~i~~D~~~~~FaK~qR~l~~C-YL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSI-RFYKLSLKDIISDNYSDRFAKIQRALQVC-YLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHhccchhhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 466788999999999 99999988777543 355567777 9999999999999999999999999999999999
Q ss_pred HHHhCChhHHHHHHHHHHHHHh
Q 012143 85 YQRLGQPLKAVSSYEKAEEILL 106 (470)
Q Consensus 85 ~~~~g~~~~A~~~~~~al~~~~ 106 (470)
....|+.++|+...........
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHhcchHHHHHHHHHHHhhhc
Confidence 9999999999999998877643
No 486
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=46.19 E-value=42 Score=30.60 Aligned_cols=47 Identities=15% Similarity=0.014 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHhcchhhhhHhhHHHHHHHhcc------------HHHHHHHHHHHHhc
Q 012143 384 EVAAAFETEENELSKMEECAGAGESAFLDQASA------------VNVAKECLLAALKA 430 (470)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~al~~ 430 (470)
-+..|+..++++.....+..|..+|.++..+|+ |.+|...+.+|-..
T Consensus 333 l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 333 LIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 456788888888888888889888888888777 67777777777543
No 487
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=45.55 E-value=3.1e+02 Score=30.26 Aligned_cols=148 Identities=18% Similarity=0.144 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccc---cCCC--------------
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES---SGDN-------------- 137 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------- 137 (470)
....-.+|..++..|++.+|+..|..|+...... .+++-.+.++.+++.+... .|..
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~------~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~ 315 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS------NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPIS 315 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc------CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCC
Confidence 5567789999999999999999999999875442 2222222222222111100 0000
Q ss_pred -----------------------------------ccccccCcccHHHHHHHHHHhhhcC----cc--chHHHHHHHHHH
Q 012143 138 -----------------------------------SLDKELEPEELEEILSKLKESMQSD----TR--QAVVWNTLGLIL 176 (470)
Q Consensus 138 -----------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~----p~--~~~~~~~l~~~~ 176 (470)
..-...-...+++++.+|.++.... |. ..++....+..+
T Consensus 316 ~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l 395 (1185)
T PF08626_consen 316 SSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFL 395 (1185)
T ss_pred CccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHH
Confidence 0000111235677888888876322 22 134556666666
Q ss_pred HHcC--------------------ChHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 177 LKSG--------------------RLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 177 ~~~~--------------------~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.... .-.++.....+++..... ....+..+|.+|...|-..++.=+.+.++.
T Consensus 396 ~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~ 473 (1185)
T PF08626_consen 396 VAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV 473 (1185)
T ss_pred HHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 6666 667777777777765432 245788888899998888777766666654
No 488
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=44.66 E-value=2.4e+02 Score=25.47 Aligned_cols=270 Identities=11% Similarity=0.034 Sum_probs=133.3
Q ss_pred CcccHHHHHHHHHHhhhc--Cccc--------hHHHHHHHHHHHHcCChHHHHHHHHHH---hhcCCCC--hHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQS--DTRQ--------AVVWNTLGLILLKSGRLQSSISVLSSL---LAVDPNN--CDCIGNLGI 208 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~--~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a---~~~~~~~--~~~~~~la~ 208 (470)
...+.++++..+...+.. .|.+ ......+|..+...|+..+-....... +..-+.. ......+-.
T Consensus 16 ~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd 95 (411)
T KOG1463|consen 16 SVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVD 95 (411)
T ss_pred ccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445568889999888873 2221 346778999999999987765554442 2222111 111112221
Q ss_pred HH-HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc---
Q 012143 209 AY-FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--- 284 (470)
Q Consensus 209 ~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--- 284 (470)
.. ...+..+.-+.....+++..............- ..+...|...++|.+|+......+..
T Consensus 96 ~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Le---------------arli~Ly~d~~~YteAlaL~~~L~rElKK 160 (411)
T KOG1463|consen 96 MFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLE---------------ARLIRLYNDTKRYTEALALINDLLRELKK 160 (411)
T ss_pred HHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH---------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 11 122334455555555555432222222111111 11345666899999999887766542
Q ss_pred -C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcC
Q 012143 285 -D--PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG 361 (470)
Q Consensus 285 -~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (470)
+ +.-.+++..-..+|+...+..+|...+..|-.....-...-...+...+....-.- ....+..++..+.+.++.-
T Consensus 161 lDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha-~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 161 LDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHA-AEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred cccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceee-cccccchHHHHHHHHHccc
Confidence 2 22456677778889999999999988877764321110000111111111111011 1133344444555555444
Q ss_pred CCCCCCcHHH-----HHHHHHHHhccccHHHHHHHHH--HHh--cchhhhhHhhHHHHHH--HhccHHHHHHHHHHHHhc
Q 012143 362 DPVQIEPPIA-----WAGFAAVQKTHHEVAAAFETEE--NEL--SKMEECAGAGESAFLD--QASAVNVAKECLLAALKA 430 (470)
Q Consensus 362 ~~~~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~--~~~--~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~ 430 (470)
.....+ ..+ |..+..+.. +..++--.... ..+ ......+.-..+.++. .+.+|+.|+..|+.-+..
T Consensus 240 ~s~~~~-v~A~~sLKYMlLcKIMl--n~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~ 316 (411)
T KOG1463|consen 240 DSLDDD-VKALTSLKYMLLCKIML--NLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAE 316 (411)
T ss_pred cccCCc-HHHHHHHHHHHHHHHHh--cCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhc
Confidence 433322 111 222222222 22222222221 122 2333344555555554 356788888888887776
Q ss_pred CC
Q 012143 431 DP 432 (470)
Q Consensus 431 ~p 432 (470)
+|
T Consensus 317 D~ 318 (411)
T KOG1463|consen 317 DP 318 (411)
T ss_pred Ch
Confidence 65
No 489
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=44.50 E-value=2.3e+02 Score=25.24 Aligned_cols=153 Identities=16% Similarity=0.067 Sum_probs=93.1
Q ss_pred hhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccccc
Q 012143 53 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 132 (470)
Q Consensus 53 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (470)
.++++.+..+.+++.+..+|--.+.++..+.+..+.| ++.+.......+...-.. .|.. ..+..
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~R-----lP~L----------~~L~F 174 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLER-----LPGL----------LELKF 174 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHh-----CcCh----------hhccc
Confidence 4566778888888888889999999999999999999 566666655555432110 0111 11111
Q ss_pred ccCCCccccccCcccHHHHHHHHHHhhhc-----------Cc--cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 133 SSGDNSLDKELEPEELEEILSKLKESMQS-----------DT--RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
.-|.. .. -++....+...... .+ .+......-+......|..+.|+..++..+...++.
T Consensus 175 ~DGtP----Fa----d~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~ 246 (301)
T TIGR03362 175 SDGTP----FA----DDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREP 246 (301)
T ss_pred CCCCC----CC----CHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCCh
Confidence 11110 00 02222222221110 01 112223344677888999999999999865543332
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 200 ---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 200 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
......++.++...|..+-|...|+...+.
T Consensus 247 R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 247 RERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 235567889999999999999999988754
No 490
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=44.05 E-value=7.6 Score=37.68 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHH--HhCCC-ChhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 29 MDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVA--RKMPK-NAHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 29 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
+..+-...+.....|...+.-.+...|++..|...+.++- .+.|. ........|.+....|++++|+..+..
T Consensus 12 L~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 12 LQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 3344344444444454444333899999999999999876 23333 345667789999999999999999975
No 491
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=43.95 E-value=1.1e+02 Score=29.48 Aligned_cols=88 Identities=11% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 012143 116 ELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 195 (470)
+..........+.++++..|.. .+|.-|+-.+-..-+..|. ..-..++..|.+++..
T Consensus 252 d~~e~~~lqq~lLw~lyd~ghl--------~~YPmALg~LadLeEi~pt---------------~~r~~~~~l~~~AI~s 308 (618)
T PF05053_consen 252 DSVELAQLQQDLLWLLYDMGHL--------ARYPMALGNLADLEEIDPT---------------PGRPTPLELFNEAISS 308 (618)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTT--------TT-HHHHHHHHHHHHHS-----------------TTS--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCch--------hhCchhhhhhHhHHhhccC---------------CCCCCHHHHHHHHHHH
Q ss_pred -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 196 -----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 196 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
+....-.|..+|-.+++.+++.+|+..+..+
T Consensus 309 a~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 309 ARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHH
No 492
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.81 E-value=1.7e+02 Score=23.64 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhcCccchH--------HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCH
Q 012143 148 LEEILSKLKESMQSDTRQAV--------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 216 (470)
++.|+..++..-+..|.... +-.....++++.|.+++|.+.+++... +|++......|..+-.....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 56777777766554443111 122234567888888888888888887 777666555555554444333
No 493
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=43.77 E-value=64 Score=21.48 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=10.5
Q ss_pred HHHHHhccHHHHHHHHHHHHh
Q 012143 409 AFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 409 ~~~~~~~~~~~A~~~~~~al~ 429 (470)
.-.-..|++++|+.+|..+++
T Consensus 14 v~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 14 VKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 334445555555555555544
No 494
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.88 E-value=86 Score=19.88 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=16.8
Q ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 012143 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLL 193 (470)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 193 (470)
.+..-.......+...|++++|.++.....
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333444455555666677777776666554
No 495
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=42.84 E-value=2.8e+02 Score=25.69 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=40.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCC-----hHHHHHHHHHH--HHcCCHHHHHHHHHH
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNN-----CDCIGNLGIAY--FQSGDMEQSAKCFQD 225 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~--~~~g~~~~A~~~~~~ 225 (470)
.+..++..++|..|...|..+....+.. ...+..+..+| ...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 5557889999999999999999875421 23444454444 568899999999986
No 496
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.78 E-value=4.2e+02 Score=27.78 Aligned_cols=27 Identities=19% Similarity=0.050 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHH
Q 012143 77 AHFLLGLMYQRLGQPLKAVSSYEKAEE 103 (470)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 103 (470)
-+..|+.+|...|+.++|++.+.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 355677778888888888888877776
No 497
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.48 E-value=2.9e+02 Score=25.88 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.+...|.+.+.+|+-++|.++++.+..
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 456678888999999999999988764
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.28 E-value=1.2e+02 Score=21.46 Aligned_cols=40 Identities=8% Similarity=-0.065 Sum_probs=30.7
Q ss_pred chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHH
Q 012143 398 KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI 437 (470)
Q Consensus 398 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 437 (470)
+.++..+-.+|.+|...|+.+.|...|+.--.+.|++...
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 4445556677778888888899999888888888887543
No 499
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=41.91 E-value=4.8e+02 Score=28.20 Aligned_cols=243 Identities=12% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh-----hcccccccccch
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSG--DMEQSAKCFQDLILKDQNHPAALINYAALLLCK-----YGSVLAGAGANT 259 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~ 259 (470)
+..++++...+.+ .....+-..|.+.+ ..+.|+....+... .+....+-..+-.++.-. .+.++-..+..+
T Consensus 778 ~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~-~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~L 855 (1265)
T KOG1920|consen 778 DAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL-AQVAVSADEALKHLLFLVDVNELFNSALGTYDLDL 855 (1265)
T ss_pred HHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh-cccchhHHHHHHHHHhhccHHHHHHhhhcccchHH
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhh
Q 012143 260 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAER 339 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 339 (470)
.+-.....+.++.+=+.++++.-+..+. ...-.+-..+|+|+.|+..+.++-...-+...-+...--.......-
T Consensus 856 al~VAq~SqkDPkEyLP~L~el~~m~~~-----~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~l 930 (1265)
T KOG1920|consen 856 ALLVAQKSQKDPKEYLPFLNELKKMETL-----LRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALAL 930 (1265)
T ss_pred HHHHHHHhccChHHHHHHHHHHhhchhh-----hhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhe
Q ss_pred ccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHH
Q 012143 340 SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNV 419 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 419 (470)
.....+........+...+..... |...+..|...|+.++|+. +|...|+|.+
T Consensus 931 y~~~~e~~k~i~~~ya~hL~~~~~--------~~~Aal~Ye~~GklekAl~-------------------a~~~~~dWr~ 983 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADHLREELM--------SDEAALMYERCGKLEKALK-------------------AYKECGDWRE 983 (1265)
T ss_pred eccCHHHHHHHHHHHHHHHHHhcc--------ccHHHHHHHHhccHHHHHH-------------------HHHHhccHHH
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 420 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 420 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
|+....+.-.-.-.....-..|..-+..++++-+|.+.....+.
T Consensus 984 ~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 984 ALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
No 500
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.85 E-value=3.6e+02 Score=28.20 Aligned_cols=138 Identities=13% Similarity=0.088 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH-HHHHHHHHhhhccccc--ccccch
Q 012143 183 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL-INYAALLLCKYGSVLA--GAGANT 259 (470)
Q Consensus 183 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~l~~~~~~~~~~~~~--~~~~~~ 259 (470)
+.|+..|....+..+.-......-+.++...|.+.+|.+.+-+....+++...+. ...+............ ...--.
T Consensus 241 e~a~~~~~~i~k~~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl~~allleqaal~f~~tkp~m~~ktffHpV 320 (960)
T KOG1938|consen 241 ENAFPLYRLILKNYQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGDLLSALLLEQAALCFGSTKPPMPRKTFFHPV 320 (960)
T ss_pred hhhhHHHHHHHhhccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchhhhHHHHHHHHHHhhcCCCCccchhhccee
Confidence 3467777777777666677778888888899999999998888877666433332 2222222210011100 011111
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 260 GEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.-|..+...|....|+.+|.+++...+. ....++.++..|. ....++|...+.+.+...+.
T Consensus 321 Lal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~-l~~~D~a~~~f~~~i~~~~k 387 (960)
T KOG1938|consen 321 LALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVYL-LCQEDDADEEFSKLIADCMK 387 (960)
T ss_pred ehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhhh-hhcchhHHHHHHHHHhhhhh
Confidence 2345566778899999999999987655 2334555666333 33346666777776655444
Done!