Query 012143
Match_columns 470
No_of_seqs 856 out of 2010
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 03:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-44 1.1E-48 331.6 39.4 364 11-466 5-370 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-41 5.3E-46 313.6 38.8 348 11-450 39-388 (388)
3 2gw1_A Mitochondrial precursor 100.0 3E-39 1E-43 309.9 35.2 380 7-467 8-481 (514)
4 3fp2_A TPR repeat-containing p 100.0 1.1E-38 3.7E-43 307.6 36.2 385 10-468 30-495 (537)
5 2xpi_A Anaphase-promoting comp 100.0 2.3E-38 7.8E-43 309.4 38.8 409 11-468 123-583 (597)
6 2y4t_A DNAJ homolog subfamily 100.0 1.8E-37 6.1E-42 292.4 34.1 358 22-467 9-413 (450)
7 3ieg_A DNAJ homolog subfamily 100.0 2.8E-35 9.5E-40 268.7 38.2 315 41-468 4-339 (359)
8 3ieg_A DNAJ homolog subfamily 100.0 1.3E-35 4.3E-40 270.9 34.6 345 6-450 4-355 (359)
9 2y4t_A DNAJ homolog subfamily 100.0 2.1E-35 7.1E-40 278.2 34.1 334 57-468 8-362 (450)
10 2xpi_A Anaphase-promoting comp 100.0 4.4E-36 1.5E-40 293.2 30.5 405 11-467 90-548 (597)
11 4g1t_A Interferon-induced prot 100.0 2.6E-35 9E-40 279.3 26.0 382 11-467 57-462 (472)
12 3hym_B Cell division cycle pro 100.0 1.2E-33 4.2E-38 254.7 34.4 249 146-452 70-322 (330)
13 2gw1_A Mitochondrial precursor 100.0 1.3E-33 4.6E-38 270.5 33.1 354 11-444 45-492 (514)
14 3fp2_A TPR repeat-containing p 100.0 5.8E-34 2E-38 274.6 25.9 349 10-439 64-500 (537)
15 1fch_A Peroxisomal targeting s 100.0 3.6E-33 1.2E-37 255.7 27.2 294 51-467 35-362 (368)
16 3hym_B Cell division cycle pro 100.0 1.1E-31 3.6E-36 242.0 32.1 280 65-468 12-303 (330)
17 4g1t_A Interferon-induced prot 100.0 7.1E-31 2.4E-35 248.8 33.1 332 41-466 52-403 (472)
18 4eqf_A PEX5-related protein; a 100.0 6.7E-32 2.3E-36 247.0 24.1 220 148-466 115-358 (365)
19 2h6f_A Protein farnesyltransfe 100.0 4.7E-31 1.6E-35 238.9 24.1 268 67-448 89-366 (382)
20 3cv0_A Peroxisome targeting si 100.0 9.2E-31 3.2E-35 235.5 25.0 272 39-467 20-318 (327)
21 4eqf_A PEX5-related protein; a 100.0 2.8E-30 9.6E-35 236.2 25.9 273 8-316 68-354 (365)
22 1fch_A Peroxisomal targeting s 100.0 8.9E-30 3E-34 233.1 26.5 279 9-318 68-359 (368)
23 2xm6_A Protein corresponding t 100.0 9.7E-28 3.3E-32 227.8 40.2 374 27-465 28-433 (490)
24 3cv0_A Peroxisome targeting si 100.0 1.4E-29 4.9E-34 227.7 24.7 281 9-322 25-319 (327)
25 2h6f_A Protein farnesyltransfe 100.0 2.9E-29 9.9E-34 227.2 24.4 242 157-466 88-350 (382)
26 2pl2_A Hypothetical conserved 100.0 4.2E-29 1.4E-33 209.9 23.2 211 163-462 2-212 (217)
27 2pl2_A Hypothetical conserved 100.0 1.1E-28 3.7E-33 207.4 20.9 200 37-316 2-212 (217)
28 2xm6_A Protein corresponding t 100.0 2.6E-26 9E-31 218.0 37.3 343 60-465 26-397 (490)
29 2ooe_A Cleavage stimulation fa 100.0 1.8E-26 6.1E-31 221.3 36.4 408 29-467 2-495 (530)
30 3u4t_A TPR repeat-containing p 100.0 1.3E-27 4.5E-32 209.0 25.9 263 40-449 3-269 (272)
31 3uq3_A Heat shock protein STI1 100.0 2.8E-27 9.6E-32 205.1 21.6 244 39-329 4-253 (258)
32 3u4t_A TPR repeat-containing p 100.0 9.9E-27 3.4E-31 203.4 24.8 244 6-330 4-262 (272)
33 3sf4_A G-protein-signaling mod 100.0 1.4E-27 4.7E-32 221.5 20.0 307 39-458 8-370 (406)
34 3mkr_A Coatomer subunit epsilo 100.0 1.9E-26 6.3E-31 202.4 25.3 229 51-329 9-240 (291)
35 3uq3_A Heat shock protein STI1 100.0 8.2E-27 2.8E-31 202.1 21.5 237 7-298 7-256 (258)
36 1xnf_A Lipoprotein NLPI; TPR, 100.0 9.5E-26 3.3E-30 197.4 27.1 245 142-458 15-269 (275)
37 3mkr_A Coatomer subunit epsilo 100.0 1.3E-25 4.6E-30 196.9 27.8 253 143-468 10-268 (291)
38 3e4b_A ALGK; tetratricopeptide 99.9 5.3E-26 1.8E-30 212.5 25.8 385 11-464 9-421 (452)
39 4a1s_A PINS, partner of inscut 99.9 3.2E-26 1.1E-30 212.8 21.1 280 74-467 47-375 (411)
40 1ouv_A Conserved hypothetical 99.9 1.5E-24 5.2E-29 189.5 30.0 229 162-467 2-254 (273)
41 3sf4_A G-protein-signaling mod 99.9 3.2E-26 1.1E-30 212.3 19.2 274 9-322 13-340 (406)
42 4abn_A Tetratricopeptide repea 99.9 1.7E-25 5.7E-30 210.4 23.2 224 146-460 82-317 (474)
43 3ro2_A PINS homolog, G-protein 99.9 8.5E-26 2.9E-30 203.7 20.5 282 42-468 7-336 (338)
44 2q7f_A YRRB protein; TPR, prot 99.9 5E-25 1.7E-29 189.1 23.2 213 39-330 22-234 (243)
45 3vtx_A MAMA; tetratricopeptide 99.9 9.1E-25 3.1E-29 178.8 23.0 173 73-323 3-175 (184)
46 2ooe_A Cleavage stimulation fa 99.9 5.2E-24 1.8E-28 204.2 31.9 365 64-466 2-456 (530)
47 4a1s_A PINS, partner of inscut 99.9 1.9E-25 6.5E-30 207.6 19.7 283 39-434 47-376 (411)
48 2q7f_A YRRB protein; TPR, prot 99.9 6.7E-25 2.3E-29 188.2 21.7 210 142-450 33-242 (243)
49 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.5E-25 2.9E-29 191.4 22.1 198 40-318 5-206 (275)
50 3vtx_A MAMA; tetratricopeptide 99.9 2.1E-24 7E-29 176.7 22.7 141 164-325 3-143 (184)
51 2ho1_A Type 4 fimbrial biogene 99.9 3.1E-24 1E-28 185.3 25.0 161 146-327 85-247 (252)
52 2ho1_A Type 4 fimbrial biogene 99.9 5.5E-24 1.9E-28 183.7 26.4 209 160-467 30-241 (252)
53 3e4b_A ALGK; tetratricopeptide 99.9 4E-25 1.4E-29 206.5 20.5 354 44-465 7-388 (452)
54 1ouv_A Conserved hypothetical 99.9 2.5E-23 8.5E-28 181.8 29.3 234 71-438 2-259 (273)
55 2vq2_A PILW, putative fimbrial 99.9 1.7E-23 5.9E-28 177.1 27.0 208 161-467 3-214 (225)
56 2vq2_A PILW, putative fimbrial 99.9 8.3E-24 2.8E-28 179.1 24.9 213 71-327 4-220 (225)
57 3ro2_A PINS homolog, G-protein 99.9 3E-25 1E-29 200.1 16.8 274 9-322 9-336 (338)
58 4abn_A Tetratricopeptide repea 99.9 1.4E-24 4.9E-29 204.1 20.6 219 52-315 79-318 (474)
59 2ond_A Cleavage stimulation fa 99.9 4E-23 1.4E-27 183.5 27.6 219 149-434 33-274 (308)
60 4i17_A Hypothetical protein; T 99.9 5.7E-23 2E-27 174.3 26.4 213 163-447 4-226 (228)
61 3ulq_A Response regulator aspa 99.9 3.8E-23 1.3E-27 190.0 26.0 245 168-467 105-371 (383)
62 4gyw_A UDP-N-acetylglucosamine 99.9 7.2E-24 2.5E-28 206.6 20.9 174 70-321 4-177 (723)
63 4i17_A Hypothetical protein; T 99.9 5.3E-23 1.8E-27 174.5 23.4 190 71-330 3-221 (228)
64 2ond_A Cleavage stimulation fa 99.9 7.7E-23 2.6E-27 181.7 24.8 157 147-324 114-276 (308)
65 4gyw_A UDP-N-acetylglucosamine 99.9 2.2E-23 7.4E-28 203.2 21.9 141 162-323 5-145 (723)
66 3ulq_A Response regulator aspa 99.9 2.5E-22 8.5E-27 184.5 24.5 308 51-432 22-370 (383)
67 3nf1_A KLC 1, kinesin light ch 99.9 6.6E-23 2.3E-27 182.7 15.6 248 161-467 22-310 (311)
68 3qky_A Outer membrane assembly 99.9 2.7E-22 9.4E-27 173.8 17.8 235 33-308 8-251 (261)
69 3qky_A Outer membrane assembly 99.9 1.4E-21 4.8E-26 169.4 21.8 219 159-455 8-252 (261)
70 3nf1_A KLC 1, kinesin light ch 99.9 5.2E-23 1.8E-27 183.3 12.1 255 36-321 23-310 (311)
71 3q15_A PSP28, response regulat 99.9 1.3E-20 4.6E-25 172.6 27.5 243 168-466 103-367 (378)
72 4ga2_A E3 SUMO-protein ligase 99.9 3.8E-22 1.3E-26 156.5 14.6 142 142-304 7-149 (150)
73 2pzi_A Probable serine/threoni 99.9 4.7E-22 1.6E-26 195.1 18.4 204 159-465 387-599 (681)
74 1qqe_A Vesicular transport pro 99.9 1.5E-21 5.1E-26 171.8 19.4 158 146-324 51-234 (292)
75 1xi4_A Clathrin heavy chain; a 99.9 3.1E-20 1E-24 184.6 29.9 348 4-463 984-1344(1630)
76 3dra_A Protein farnesyltransfe 99.9 1.2E-20 4E-25 163.9 23.6 231 58-329 50-299 (306)
77 3dra_A Protein farnesyltransfe 99.9 3.8E-20 1.3E-24 160.7 26.8 230 148-444 49-302 (306)
78 3urz_A Uncharacterized protein 99.9 6.7E-21 2.3E-25 158.6 19.5 189 74-323 3-191 (208)
79 1hz4_A MALT regulatory protein 99.9 3.9E-20 1.3E-24 169.3 25.2 265 143-467 25-325 (373)
80 1hz4_A MALT regulatory protein 99.9 3.1E-19 1.1E-23 163.3 31.0 313 42-433 16-352 (373)
81 2pzi_A Probable serine/threoni 99.9 5.2E-21 1.8E-25 187.8 19.8 187 35-304 389-583 (681)
82 3edt_B KLC 2, kinesin light ch 99.9 7.8E-22 2.7E-26 173.1 12.6 238 144-465 13-282 (283)
83 3q15_A PSP28, response regulat 99.9 4.5E-20 1.5E-24 169.0 24.8 307 51-431 22-366 (378)
84 1qqe_A Vesicular transport pro 99.9 3.8E-21 1.3E-25 169.2 16.6 218 56-325 32-276 (292)
85 3urz_A Uncharacterized protein 99.9 1E-20 3.6E-25 157.4 17.7 180 165-444 3-199 (208)
86 1b89_A Protein (clathrin heavy 99.9 3.7E-21 1.3E-25 172.0 15.1 239 13-331 11-249 (449)
87 1xi4_A Clathrin heavy chain; a 99.9 8.1E-19 2.8E-23 174.6 32.7 273 37-393 1102-1379(1630)
88 2yhc_A BAMD, UPF0169 lipoprote 99.9 1.2E-19 4E-24 153.2 21.8 206 165-468 3-217 (225)
89 4ga2_A E3 SUMO-protein ligase 99.8 4E-21 1.4E-25 150.7 10.7 139 171-330 2-141 (150)
90 3as5_A MAMA; tetratricopeptide 99.8 6.1E-20 2.1E-24 150.1 18.1 162 142-324 18-179 (186)
91 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.1E-19 7.2E-24 151.6 21.9 154 167-324 42-219 (225)
92 3as5_A MAMA; tetratricopeptide 99.8 2.8E-19 9.7E-24 146.0 21.4 135 166-321 8-142 (186)
93 3edt_B KLC 2, kinesin light ch 99.8 1.2E-20 4.2E-25 165.4 13.6 237 53-319 13-282 (283)
94 4gco_A Protein STI-1; structur 99.8 6.3E-20 2.1E-24 138.9 15.2 122 157-299 4-125 (126)
95 3dss_A Geranylgeranyl transfer 99.8 3.4E-18 1.1E-22 149.1 25.8 241 23-330 48-316 (331)
96 2r5s_A Uncharacterized protein 99.8 2.9E-19 1E-23 144.5 16.0 140 162-322 2-141 (176)
97 1b89_A Protein (clathrin heavy 99.8 1.4E-20 4.9E-25 168.2 8.1 284 51-458 13-305 (449)
98 2r5s_A Uncharacterized protein 99.8 4.9E-19 1.7E-23 143.2 15.7 152 144-317 18-172 (176)
99 3dss_A Geranylgeranyl transfer 99.8 2E-17 6.9E-22 144.2 26.8 160 149-329 47-233 (331)
100 2vsy_A XCC0866; transferase, g 99.8 7.9E-19 2.7E-23 169.7 19.7 165 145-330 2-169 (568)
101 4gco_A Protein STI-1; structur 99.8 5.2E-19 1.8E-23 133.8 14.5 120 191-331 4-123 (126)
102 2ifu_A Gamma-SNAP; membrane fu 99.8 1E-18 3.5E-23 154.8 16.9 159 146-327 50-232 (307)
103 3qou_A Protein YBBN; thioredox 99.8 4.1E-18 1.4E-22 149.2 20.4 171 69-317 111-283 (287)
104 3gyz_A Chaperone protein IPGC; 99.8 1.4E-19 4.8E-24 140.8 9.7 115 187-322 23-137 (151)
105 3gyz_A Chaperone protein IPGC; 99.8 5.2E-19 1.8E-23 137.5 12.8 121 148-289 18-138 (151)
106 4e6h_A MRNA 3'-END-processing 99.8 1.3E-16 4.4E-21 153.8 31.7 399 22-469 49-575 (679)
107 2ifu_A Gamma-SNAP; membrane fu 99.8 5.6E-18 1.9E-22 150.1 19.9 175 87-323 3-189 (307)
108 3q7a_A Farnesyltransferase alp 99.8 2E-17 6.9E-22 144.7 22.6 162 148-330 70-249 (349)
109 3qou_A Protein YBBN; thioredox 99.8 1.1E-17 3.9E-22 146.4 19.8 140 162-322 113-252 (287)
110 3q7a_A Farnesyltransferase alp 99.8 7.1E-18 2.4E-22 147.6 17.7 253 51-327 64-341 (349)
111 1p5q_A FKBP52, FK506-binding p 99.8 9E-19 3.1E-23 156.8 11.6 203 14-283 74-293 (336)
112 2vsy_A XCC0866; transferase, g 99.8 9.7E-18 3.3E-22 162.1 17.9 165 54-296 2-169 (568)
113 2vgx_A Chaperone SYCD; alterna 99.8 2.9E-18 9.9E-23 133.8 11.5 118 153-291 8-125 (148)
114 3rjv_A Putative SEL1 repeat pr 99.8 7.2E-17 2.5E-21 134.5 18.3 161 58-245 3-173 (212)
115 1p5q_A FKBP52, FK506-binding p 99.7 4.2E-18 1.4E-22 152.5 11.4 154 144-318 125-294 (336)
116 4f3v_A ESX-1 secretion system 99.7 2.3E-17 7.9E-22 139.6 14.7 211 53-297 18-249 (282)
117 2vgx_A Chaperone SYCD; alterna 99.7 1.4E-17 4.9E-22 129.9 12.4 121 185-326 6-126 (148)
118 2xcb_A PCRH, regulatory protei 99.7 1.7E-17 5.8E-22 128.8 12.6 125 153-298 5-129 (142)
119 2fo7_A Synthetic consensus TPR 99.7 1.9E-16 6.5E-21 121.7 18.0 134 167-321 2-135 (136)
120 2c2l_A CHIP, carboxy terminus 99.7 2.1E-17 7E-22 144.2 13.7 198 197-464 1-199 (281)
121 4f3v_A ESX-1 secretion system 99.7 1.8E-17 6.3E-22 140.2 11.6 201 144-442 18-248 (282)
122 3rjv_A Putative SEL1 repeat pr 99.7 6.2E-16 2.1E-20 128.8 20.3 150 149-323 3-162 (212)
123 4e6h_A MRNA 3'-END-processing 99.7 2.6E-14 9.1E-19 137.8 34.3 380 57-466 48-535 (679)
124 2xcb_A PCRH, regulatory protei 99.7 1E-16 3.4E-21 124.4 12.8 120 187-327 5-124 (142)
125 1hh8_A P67PHOX, NCF-2, neutrop 99.7 1E-15 3.5E-20 127.9 19.9 143 166-332 6-164 (213)
126 2c2l_A CHIP, carboxy terminus 99.7 2E-16 6.9E-21 137.9 15.5 137 161-323 33-169 (281)
127 3upv_A Heat shock protein STI1 99.7 4.5E-16 1.5E-20 118.1 15.4 118 163-301 1-124 (126)
128 2e2e_A Formate-dependent nitri 99.7 2.1E-16 7.1E-21 127.9 13.5 131 142-293 20-153 (177)
129 4gcn_A Protein STI-1; structur 99.7 3.1E-16 1.1E-20 118.8 13.4 117 164-295 6-122 (127)
130 3mv2_B Coatomer subunit epsilo 99.7 1.4E-14 4.7E-19 124.3 23.5 211 51-320 23-242 (310)
131 1dce_A Protein (RAB geranylger 99.7 1.2E-16 4.1E-21 152.1 12.0 212 57-322 45-271 (567)
132 2e2e_A Formate-dependent nitri 99.7 1E-15 3.5E-20 123.8 15.8 131 176-327 20-153 (177)
133 2fbn_A 70 kDa peptidylprolyl i 99.7 1.7E-16 5.8E-21 130.9 11.2 153 144-317 16-185 (198)
134 1a17_A Serine/threonine protei 99.7 2.7E-15 9.3E-20 119.8 17.4 134 165-319 12-147 (166)
135 2vyi_A SGTA protein; chaperone 99.7 1.9E-15 6.6E-20 115.3 15.7 126 160-306 6-131 (131)
136 2fo7_A Synthetic consensus TPR 99.7 6.8E-15 2.3E-19 112.9 18.6 115 152-287 21-135 (136)
137 2lni_A Stress-induced-phosphop 99.7 2.1E-15 7.3E-20 115.5 15.7 123 161-304 11-133 (133)
138 2qfc_A PLCR protein; TPR, HTH, 99.7 6.9E-15 2.4E-19 129.4 20.9 182 197-467 72-269 (293)
139 3sz7_A HSC70 cochaperone (SGT) 99.7 2E-15 6.9E-20 120.3 14.7 82 164-245 9-90 (164)
140 1dce_A Protein (RAB geranylger 99.7 3.2E-15 1.1E-19 142.4 18.6 162 149-331 46-234 (567)
141 3sz7_A HSC70 cochaperone (SGT) 99.7 3.8E-15 1.3E-19 118.7 15.7 119 196-335 7-125 (164)
142 3upv_A Heat shock protein STI1 99.7 3.1E-15 1.1E-19 113.4 14.1 113 197-330 1-119 (126)
143 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2.3E-16 7.9E-21 147.3 9.4 153 143-316 245-413 (457)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.8E-14 6.2E-19 120.3 18.8 141 142-318 16-172 (213)
145 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3E-16 1E-20 146.5 8.6 181 20-245 201-396 (457)
146 2qfc_A PLCR protein; TPR, HTH, 99.6 1.1E-14 3.8E-19 128.1 17.7 133 167-320 116-268 (293)
147 1na0_A Designed protein CTPR3; 99.6 2.7E-14 9.4E-19 107.8 17.0 121 162-303 4-125 (125)
148 3u3w_A Transcriptional activat 99.6 2.9E-14 9.8E-19 125.4 19.3 180 202-467 77-269 (293)
149 3q49_B STIP1 homology and U bo 99.6 7.5E-15 2.6E-19 113.1 13.6 118 162-300 5-127 (137)
150 3u3w_A Transcriptional activat 99.6 6E-15 2E-19 129.8 14.3 157 142-319 85-267 (293)
151 1a17_A Serine/threonine protei 99.6 1.9E-14 6.3E-19 114.9 15.5 131 260-468 18-150 (166)
152 2hr2_A Hypothetical protein; a 99.6 2E-15 6.7E-20 115.4 9.0 112 166-298 11-145 (159)
153 1hxi_A PEX5, peroxisome target 99.6 8.2E-15 2.8E-19 109.7 12.0 103 167-290 18-120 (121)
154 2hr2_A Hypothetical protein; a 99.6 7.5E-15 2.6E-19 112.2 11.6 107 200-327 11-140 (159)
155 1hxi_A PEX5, peroxisome target 99.6 1.1E-14 3.9E-19 109.0 12.3 102 201-323 18-119 (121)
156 4gcn_A Protein STI-1; structur 99.6 6.8E-15 2.3E-19 111.3 11.1 102 199-321 7-115 (127)
157 3mv2_B Coatomer subunit epsilo 99.6 1.6E-13 5.6E-18 117.7 20.4 243 143-468 24-286 (310)
158 1elw_A TPR1-domain of HOP; HOP 99.6 8.1E-14 2.8E-18 104.0 16.4 114 165-299 3-116 (118)
159 3rkv_A Putative peptidylprolyl 99.6 1.3E-14 4.4E-19 115.3 12.5 117 165-302 10-145 (162)
160 2fbn_A 70 kDa peptidylprolyl i 99.6 5.2E-15 1.8E-19 122.0 10.3 146 167-333 5-166 (198)
161 3gw4_A Uncharacterized protein 99.6 2.5E-14 8.6E-19 118.4 13.5 160 143-323 3-181 (203)
162 2vyi_A SGTA protein; chaperone 99.6 4.1E-14 1.4E-18 107.8 13.7 90 156-245 36-125 (131)
163 2dba_A Smooth muscle cell asso 99.6 6.1E-14 2.1E-18 109.5 14.7 121 159-300 21-144 (148)
164 1wao_1 Serine/threonine protei 99.6 1.1E-15 3.9E-20 143.1 5.1 138 166-324 6-156 (477)
165 2lni_A Stress-induced-phosphop 99.6 9.4E-14 3.2E-18 106.2 15.0 117 196-333 12-128 (133)
166 3q49_B STIP1 homology and U bo 99.6 8.3E-14 2.8E-18 107.2 14.8 107 194-321 3-109 (137)
167 2if4_A ATFKBP42; FKBP-like, al 99.6 2.9E-15 9.8E-20 134.1 6.7 149 155-324 168-334 (338)
168 1wao_1 Serine/threonine protei 99.6 3.4E-14 1.2E-18 133.1 14.0 128 142-288 16-154 (477)
169 4b4t_Q 26S proteasome regulato 99.6 1.9E-13 6.6E-18 127.5 18.9 233 1-284 1-245 (434)
170 2xev_A YBGF; tetratricopeptide 99.6 1.9E-13 6.5E-18 103.9 15.6 115 167-302 3-123 (129)
171 2kck_A TPR repeat; tetratricop 99.5 6.4E-14 2.2E-18 103.5 12.4 106 196-322 2-110 (112)
172 2kck_A TPR repeat; tetratricop 99.5 5.8E-14 2E-18 103.7 11.6 107 162-289 2-111 (112)
173 1zu2_A Mitochondrial import re 99.5 1.7E-14 5.9E-19 109.9 8.7 99 143-241 13-132 (158)
174 1elw_A TPR1-domain of HOP; HOP 99.5 3.3E-13 1.1E-17 100.6 15.7 112 199-331 3-114 (118)
175 2if4_A ATFKBP42; FKBP-like, al 99.5 1.3E-14 4.4E-19 129.9 9.1 161 70-290 174-334 (338)
176 1zu2_A Mitochondrial import re 99.5 4.5E-14 1.5E-18 107.6 10.5 103 51-200 12-125 (158)
177 3rkv_A Putative peptidylprolyl 99.5 1.7E-13 5.8E-18 108.8 14.4 110 200-330 11-139 (162)
178 1na0_A Designed protein CTPR3; 99.5 6.1E-13 2.1E-17 100.2 16.5 116 196-332 4-120 (125)
179 1elr_A TPR2A-domain of HOP; HO 99.5 1.5E-13 5E-18 104.7 13.0 119 163-303 1-126 (131)
180 4b4t_Q 26S proteasome regulato 99.5 9.9E-13 3.4E-17 122.7 20.2 140 166-320 4-166 (434)
181 2dba_A Smooth muscle cell asso 99.5 4.3E-13 1.5E-17 104.6 14.6 116 194-330 22-140 (148)
182 3k9i_A BH0479 protein; putativ 99.5 5.6E-14 1.9E-18 104.7 8.8 94 145-238 3-99 (117)
183 3gw4_A Uncharacterized protein 99.5 1.4E-12 4.7E-17 107.8 17.8 124 176-320 2-138 (203)
184 1ihg_A Cyclophilin 40; ppiase 99.5 5.3E-13 1.8E-17 120.6 16.2 130 75-245 223-352 (370)
185 3k9i_A BH0479 protein; putativ 99.5 7.9E-14 2.7E-18 103.9 8.7 104 178-302 2-108 (117)
186 2xev_A YBGF; tetratricopeptide 99.5 8E-13 2.7E-17 100.4 14.5 107 201-328 3-115 (129)
187 1ihg_A Cyclophilin 40; ppiase 99.5 3.4E-13 1.2E-17 121.9 14.0 125 166-311 223-363 (370)
188 2uy1_A Cleavage stimulation fa 99.5 5.5E-11 1.9E-15 111.6 29.4 344 53-461 6-380 (493)
189 3ro3_A PINS homolog, G-protein 99.4 8.5E-13 2.9E-17 104.7 11.6 142 165-321 8-161 (164)
190 1elr_A TPR2A-domain of HOP; HO 99.4 2.2E-12 7.5E-17 98.1 13.0 110 198-329 2-118 (131)
191 2uy1_A Cleavage stimulation fa 99.4 1.6E-10 5.5E-15 108.4 27.5 366 15-466 24-415 (493)
192 3ro3_A PINS homolog, G-protein 99.4 4.7E-12 1.6E-16 100.3 12.1 141 75-232 9-161 (164)
193 2kat_A Uncharacterized protein 99.3 3.5E-11 1.2E-15 89.1 12.0 84 150-233 3-86 (115)
194 2kat_A Uncharacterized protein 99.3 3.9E-11 1.3E-15 88.8 11.0 83 184-287 3-85 (115)
195 2l6j_A TPR repeat-containing p 99.3 6.2E-12 2.1E-16 92.5 6.2 67 167-233 5-71 (111)
196 2l6j_A TPR repeat-containing p 99.3 3.7E-12 1.3E-16 93.7 4.9 85 142-226 14-104 (111)
197 1na3_A Designed protein CTPR2; 99.2 1E-10 3.4E-15 82.4 11.7 83 163-245 6-88 (91)
198 1na3_A Designed protein CTPR2; 99.2 1.6E-10 5.5E-15 81.3 11.4 85 198-303 7-91 (91)
199 3ma5_A Tetratricopeptide repea 99.2 1.4E-10 4.7E-15 83.2 10.5 73 161-233 2-74 (100)
200 3u64_A Protein TP_0956; tetrat 99.1 1.8E-09 6.3E-14 90.1 15.6 188 54-287 45-272 (301)
201 1klx_A Cysteine rich protein B 99.1 2.3E-09 7.9E-14 81.8 14.6 125 145-296 8-136 (138)
202 2kc7_A BFR218_protein; tetratr 99.1 1E-10 3.5E-15 83.9 6.3 69 170-238 4-73 (99)
203 3ma5_A Tetratricopeptide repea 99.1 5E-10 1.7E-14 80.3 9.8 70 196-286 3-72 (100)
204 2kc7_A BFR218_protein; tetratr 99.1 2.7E-10 9.2E-15 81.6 7.2 91 204-323 4-95 (99)
205 3ly7_A Transcriptional activat 99.1 6.2E-09 2.1E-13 91.0 16.7 144 159-324 187-345 (372)
206 1klx_A Cysteine rich protein B 99.0 6.2E-09 2.1E-13 79.4 13.7 116 180-320 9-128 (138)
207 3ly7_A Transcriptional activat 99.0 2.8E-08 9.5E-13 86.9 18.9 155 32-235 186-345 (372)
208 3n71_A Histone lysine methyltr 99.0 1.7E-09 5.9E-14 100.5 11.3 127 172-319 315-465 (490)
209 3u64_A Protein TP_0956; tetrat 99.0 1.9E-08 6.5E-13 84.1 15.7 158 149-322 49-273 (301)
210 3bee_A Putative YFRE protein; 99.0 6.9E-09 2.4E-13 72.4 10.5 73 162-234 2-77 (93)
211 1pc2_A Mitochondria fission pr 99.0 5.8E-09 2E-13 78.5 10.6 103 142-244 8-115 (152)
212 3n71_A Histone lysine methyltr 98.9 2.7E-09 9.2E-14 99.2 9.7 125 142-284 319-464 (490)
213 3bee_A Putative YFRE protein; 98.8 8.8E-08 3E-12 66.7 10.8 77 230-324 2-78 (93)
214 2v5f_A Prolyl 4-hydroxylase su 98.7 1.3E-07 4.4E-12 67.9 10.8 77 165-241 4-87 (104)
215 1pc2_A Mitochondria fission pr 98.7 1.8E-07 6.1E-12 70.4 11.2 96 182-298 14-114 (152)
216 3qww_A SET and MYND domain-con 98.6 1.5E-07 5.2E-12 86.0 11.0 94 144-237 310-424 (433)
217 4g26_A Pentatricopeptide repea 98.5 2.7E-05 9.1E-10 73.1 22.7 157 142-319 36-205 (501)
218 4g26_A Pentatricopeptide repea 98.5 5.2E-05 1.8E-09 71.1 23.7 189 77-300 28-221 (501)
219 3qwp_A SET and MYND domain-con 98.5 4.7E-07 1.6E-11 83.0 9.4 97 142-238 297-414 (429)
220 2v5f_A Prolyl 4-hydroxylase su 98.5 2.3E-06 7.8E-11 61.3 11.2 77 199-296 4-87 (104)
221 3qww_A SET and MYND domain-con 98.4 1.4E-06 4.7E-11 79.7 11.3 87 380-466 309-413 (433)
222 3qwp_A SET and MYND domain-con 98.4 9.7E-07 3.3E-11 80.9 10.1 108 172-300 293-424 (429)
223 1nzn_A CGI-135 protein, fissio 98.4 3.8E-06 1.3E-10 60.7 10.7 96 147-242 16-116 (126)
224 4h7y_A Dual specificity protei 98.3 1.6E-05 5.6E-10 58.6 11.4 116 70-235 8-129 (161)
225 4h7y_A Dual specificity protei 98.1 8.8E-05 3E-09 54.8 12.9 114 195-323 8-128 (161)
226 1nzn_A CGI-135 protein, fissio 98.1 3.8E-05 1.3E-09 55.5 10.8 97 181-298 16-117 (126)
227 1y8m_A FIS1; mitochondria, unk 97.8 0.00059 2E-08 50.1 12.8 99 143-242 17-119 (144)
228 3o48_A Mitochondria fission 1 97.8 0.00045 1.5E-08 50.0 11.9 100 143-243 18-121 (134)
229 3ffl_A Anaphase-promoting comp 97.8 8.2E-05 2.8E-09 56.3 8.1 102 142-244 30-165 (167)
230 3ffl_A Anaphase-promoting comp 97.7 0.00035 1.2E-08 52.9 10.0 64 166-229 20-92 (167)
231 3txn_A 26S proteasome regulato 97.3 0.025 8.5E-07 50.5 18.3 198 76-307 20-238 (394)
232 3o48_A Mitochondria fission 1 97.2 0.012 4.1E-07 42.7 12.2 63 147-209 58-121 (134)
233 1y8m_A FIS1; mitochondria, unk 97.1 0.018 6.1E-07 42.4 12.7 61 149-209 59-120 (144)
234 3kae_A CDC27, possible protein 97.0 0.041 1.4E-06 41.5 13.4 77 17-103 14-90 (242)
235 3txn_A 26S proteasome regulato 97.0 0.049 1.7E-06 48.6 16.6 177 290-467 20-213 (394)
236 1zbp_A Hypothetical protein VP 96.7 0.039 1.3E-06 45.6 12.8 58 51-108 7-64 (273)
237 2wpv_A GET4, UPF0363 protein Y 96.5 0.33 1.1E-05 41.6 22.7 80 149-228 117-216 (312)
238 1qsa_A Protein (soluble lytic 96.5 0.64 2.2E-05 44.5 24.5 52 412-463 296-347 (618)
239 4gns_B Protein CSD3, chitin bi 96.5 0.023 7.7E-07 55.3 11.6 123 178-315 260-397 (754)
240 1zbp_A Hypothetical protein VP 96.4 0.13 4.4E-06 42.6 14.2 63 175-237 6-68 (273)
241 4b4t_P 26S proteasome regulato 96.4 0.28 9.6E-06 45.0 18.1 196 268-466 29-249 (445)
242 4gns_B Protein CSD3, chitin bi 96.4 0.037 1.3E-06 53.9 12.5 60 167-226 338-397 (754)
243 3mkq_A Coatomer beta'-subunit; 96.3 0.09 3.1E-06 52.8 15.8 44 144-192 664-707 (814)
244 3kae_A CDC27, possible protein 96.2 0.26 9E-06 37.3 16.2 114 163-323 30-148 (242)
245 3mkq_B Coatomer subunit alpha; 96.0 0.066 2.3E-06 41.4 9.9 72 142-226 15-86 (177)
246 1ya0_A SMG-7 transcript varian 96.0 0.05 1.7E-06 50.3 11.0 79 168-246 154-232 (497)
247 3mkq_B Coatomer subunit alpha; 95.9 0.42 1.4E-05 36.9 15.0 55 165-227 7-61 (177)
248 1qsa_A Protein (soluble lytic 95.9 1.3 4.4E-05 42.4 28.6 260 27-317 56-347 (618)
249 2ff4_A Probable regulatory pro 95.5 0.13 4.5E-06 46.2 11.4 83 146-228 129-233 (388)
250 4b4t_R RPN7, 26S proteasome re 95.3 0.2 6.9E-06 45.8 12.3 124 146-286 111-239 (429)
251 2ff4_A Probable regulatory pro 95.0 0.65 2.2E-05 41.7 14.5 90 173-283 122-233 (388)
252 4fhn_B Nucleoporin NUP120; pro 95.0 3.1 0.00011 43.4 21.3 138 170-312 816-961 (1139)
253 4b4t_P 26S proteasome regulato 94.9 2.2 7.7E-05 39.0 24.0 199 144-397 28-246 (445)
254 3mkq_A Coatomer beta'-subunit; 94.9 0.48 1.6E-05 47.5 14.8 113 51-225 662-774 (814)
255 3spa_A Mtrpol, DNA-directed RN 94.9 0.45 1.5E-05 47.8 13.6 99 166-285 127-231 (1134)
256 1ya0_A SMG-7 transcript varian 94.3 0.37 1.3E-05 44.6 11.2 80 201-301 153-232 (497)
257 3lvg_A Clathrin heavy chain 1; 94.2 9.5E-05 3.3E-09 66.3 -12.1 226 37-312 51-285 (624)
258 3spa_A Mtrpol, DNA-directed RN 94.1 0.89 3E-05 45.8 13.7 91 140-230 135-231 (1134)
259 4fhn_B Nucleoporin NUP120; pro 93.9 2.1 7.3E-05 44.6 17.3 220 51-318 822-1050(1139)
260 3lpz_A GET4 (YOR164C homolog); 93.9 2.8 9.7E-05 36.2 24.8 79 149-227 119-214 (336)
261 4b4t_S RPN3, 26S proteasome re 93.6 1.3 4.5E-05 40.8 13.1 126 175-323 145-304 (523)
262 4b4t_R RPN7, 26S proteasome re 93.0 1.6 5.5E-05 39.8 13.0 25 171-195 213-237 (429)
263 4b4t_S RPN3, 26S proteasome re 92.8 0.66 2.3E-05 42.7 9.9 67 166-234 231-304 (523)
264 4ady_A RPN2, 26S proteasome re 89.8 18 0.00061 36.4 25.0 225 52-311 385-616 (963)
265 2wpv_A GET4, UPF0363 protein Y 88.8 11 0.00036 32.4 14.9 88 365-465 130-218 (312)
266 1wy6_A Hypothetical protein ST 88.7 4.5 0.00015 29.5 8.8 63 42-104 92-154 (172)
267 3lvg_A Clathrin heavy chain 1; 84.9 0.0071 2.4E-07 54.6 -8.7 251 12-310 61-325 (624)
268 4ady_A RPN2, 26S proteasome re 84.7 30 0.001 34.8 15.3 183 18-228 387-588 (963)
269 4gq2_M Nucleoporin NUP120; bet 83.0 22 0.00075 36.2 14.2 53 171-227 815-867 (950)
270 3lpz_A GET4 (YOR164C homolog); 78.1 33 0.0011 29.7 25.1 244 146-449 10-296 (336)
271 1wy6_A Hypothetical protein ST 78.0 18 0.00062 26.5 11.4 53 176-228 101-153 (172)
272 3esl_A Checkpoint serine/threo 77.5 22 0.00075 28.0 9.4 72 161-233 75-148 (202)
273 3ax2_A Mitochondrial import re 77.5 3.3 0.00011 26.4 3.9 29 439-467 21-49 (73)
274 1om2_A Protein (mitochondrial 75.3 8.2 0.00028 26.0 5.5 30 79-108 24-53 (95)
275 3ax2_A Mitochondrial import re 71.1 13 0.00043 23.7 5.4 32 170-201 21-52 (73)
276 2w2u_A Hypothetical P60 katani 70.7 5.2 0.00018 26.3 3.7 15 91-105 16-30 (83)
277 1om2_A Protein (mitochondrial 70.5 6.1 0.00021 26.7 4.0 29 439-467 24-52 (95)
278 2crb_A Nuclear receptor bindin 69.7 10 0.00035 25.2 4.8 22 406-427 20-41 (97)
279 2ijq_A Hypothetical protein; s 69.3 34 0.0012 25.8 8.4 61 406-466 37-106 (161)
280 4gq2_M Nucleoporin NUP120; bet 69.0 30 0.001 35.3 10.6 111 51-200 820-932 (950)
281 2v6y_A AAA family ATPase, P60 68.9 5.9 0.0002 26.1 3.7 14 92-105 9-22 (83)
282 2rpa_A Katanin P60 ATPase-cont 65.0 8.4 0.00029 24.9 3.7 25 440-464 17-41 (78)
283 4a5x_A MITD1, MIT domain-conta 64.9 9.9 0.00034 25.2 4.2 25 405-429 20-44 (86)
284 2ijq_A Hypothetical protein; s 63.4 46 0.0016 25.1 8.5 61 169-229 35-104 (161)
285 2crb_A Nuclear receptor bindin 62.8 15 0.00051 24.5 4.5 30 75-104 15-44 (97)
286 2w2u_A Hypothetical P60 katani 62.1 16 0.00054 24.0 4.8 18 447-464 31-48 (83)
287 3t5x_A PCI domain-containing p 62.0 20 0.00068 28.5 6.3 35 166-200 14-48 (203)
288 2v6y_A AAA family ATPase, P60 59.5 14 0.00049 24.2 4.3 18 410-427 20-37 (83)
289 3t5v_B Nuclear mRNA export pro 59.2 35 0.0012 31.1 8.1 90 144-233 138-254 (455)
290 3t5x_A PCI domain-containing p 57.6 31 0.0011 27.3 6.8 42 200-241 14-55 (203)
291 2ynq_A ESSB; membrane protein, 56.7 54 0.0018 24.6 7.2 81 376-459 15-97 (161)
292 2rpa_A Katanin P60 ATPase-cont 53.0 22 0.00074 23.0 4.1 28 78-105 15-42 (78)
293 1wfd_A Hypothetical protein 15 50.6 24 0.00081 23.8 4.3 22 407-428 21-42 (93)
294 3t5v_B Nuclear mRNA export pro 50.5 23 0.00078 32.3 5.4 30 435-464 220-249 (455)
295 2v6x_A Vacuolar protein sortin 50.4 30 0.001 22.7 4.8 23 407-429 19-41 (85)
296 3esl_A Checkpoint serine/threo 50.3 92 0.0031 24.6 9.8 47 417-463 95-143 (202)
297 4aez_C MAD3, mitotic spindle c 49.6 1E+02 0.0034 24.8 11.5 65 162-232 116-182 (223)
298 3re2_A Predicted protein; meni 49.2 84 0.0029 27.3 8.1 63 166-228 255-324 (472)
299 2cwy_A Hypothetical protein TT 49.1 58 0.002 21.9 6.9 58 407-466 7-70 (94)
300 2cpt_A SKD1 protein, vacuolar 47.6 18 0.00062 25.6 3.4 13 92-104 16-28 (117)
301 2cpt_A SKD1 protein, vacuolar 46.4 33 0.0011 24.3 4.6 24 406-429 23-46 (117)
302 3re2_A Predicted protein; meni 44.5 67 0.0023 27.9 6.8 25 403-427 298-322 (472)
303 2dl1_A Spartin; SPG20, MIT, st 43.1 21 0.00071 25.1 3.1 15 414-428 35-49 (116)
304 4aez_C MAD3, mitotic spindle c 42.7 1.2E+02 0.0042 24.3 7.9 35 396-430 145-179 (223)
305 3u84_A Menin; MLL, JUND, ledgf 40.3 85 0.0029 27.9 6.9 30 436-465 319-348 (550)
306 2cwy_A Hypothetical protein TT 40.0 83 0.0028 21.1 7.4 28 205-232 6-33 (94)
307 2wvi_A Mitotic checkpoint seri 39.8 1.2E+02 0.0041 22.9 8.1 37 395-431 90-126 (164)
308 3u84_A Menin; MLL, JUND, ledgf 38.0 1.5E+02 0.0051 26.5 8.0 45 184-228 297-346 (550)
309 2wvi_A Mitotic checkpoint seri 35.4 1.4E+02 0.0049 22.5 10.9 63 163-231 63-127 (164)
310 4gq4_A Menin; tumor suppressor 34.9 1.8E+02 0.0061 26.0 8.1 63 166-228 262-331 (489)
311 2cfu_A SDSA1; SDS-hydrolase, l 33.4 64 0.0022 31.2 5.9 46 169-214 452-497 (658)
312 1wfd_A Hypothetical protein 15 32.9 1.1E+02 0.0038 20.4 7.9 40 371-435 17-56 (93)
313 2dl1_A Spartin; SPG20, MIT, st 32.8 47 0.0016 23.3 3.5 16 90-105 18-33 (116)
314 3mkr_B Coatomer subunit alpha; 31.6 1.8E+02 0.0063 24.8 7.6 29 78-106 105-133 (320)
315 3mv2_A Coatomer subunit alpha; 29.7 2.7E+02 0.0092 23.9 11.2 28 79-106 118-145 (325)
316 4a5x_A MITD1, MIT domain-conta 29.3 1.2E+02 0.0042 19.9 7.9 38 372-434 19-56 (86)
317 3myv_A SUSD superfamily protei 29.3 1.3E+02 0.0045 27.4 7.1 31 434-464 189-219 (454)
318 3bu8_A Telomeric repeat-bindin 27.6 2.3E+02 0.008 22.5 7.5 76 148-223 88-171 (235)
319 3kez_A Putative sugar binding 26.9 1.4E+02 0.0049 27.2 6.9 32 433-464 194-225 (461)
320 2cfu_A SDSA1; SDS-hydrolase, l 26.4 97 0.0033 29.9 5.9 49 404-452 452-500 (658)
321 3mcx_A SUSD superfamily protei 26.4 1.6E+02 0.0054 27.0 7.1 31 434-464 201-231 (477)
322 4gq4_A Menin; tumor suppressor 25.9 1.8E+02 0.0062 25.9 6.6 30 436-465 304-333 (489)
323 3lew_A SUSD-like carbohydrate 25.4 1.7E+02 0.0057 27.0 7.1 31 434-464 202-232 (495)
324 1bpo_A Protein (clathrin); cla 24.9 4E+02 0.014 24.3 10.3 22 81-102 347-368 (494)
325 3ubw_A 14-3-3E, 14-3-3 protein 24.0 3.1E+02 0.01 22.7 11.4 149 169-317 34-227 (261)
326 3bqo_A Telomeric repeat-bindin 23.6 1.2E+02 0.004 23.8 4.5 39 206-244 123-161 (211)
327 3uzd_A 14-3-3 protein gamma; s 23.6 3E+02 0.01 22.5 18.0 48 417-464 147-203 (248)
328 3myv_A SUSD superfamily protei 23.4 1.5E+02 0.0052 26.9 6.4 48 57-104 164-219 (454)
329 3snx_A SUSD homolog, putative 23.0 81 0.0028 28.9 4.4 28 167-194 192-219 (460)
330 2br9_A 14-3-3E, 14-3-3 protein 22.4 3.1E+02 0.011 22.2 16.3 48 417-464 146-202 (234)
331 3kez_A Putative sugar binding 22.0 1.6E+02 0.0056 26.8 6.3 48 57-104 170-225 (461)
332 3iqu_A 14-3-3 protein sigma; s 22.0 3.2E+02 0.011 22.2 17.3 47 417-463 149-204 (236)
333 3bqo_A Telomeric repeat-bindin 21.7 85 0.0029 24.6 3.5 67 148-214 94-165 (211)
334 3lew_A SUSD-like carbohydrate 20.5 2.2E+02 0.0074 26.3 6.8 48 57-104 174-232 (495)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.2e-44 Score=331.57 Aligned_cols=364 Identities=19% Similarity=0.169 Sum_probs=302.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
.+..+...|++++|+ ..+.++++.+|++...+..+|.+ +...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 5 ~a~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAE-RHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 467788999999999 99999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 170 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 170 (470)
+++|+..|+++++.+|+.. ..+..++.++ ...|++++|+..|++++..+|+++.++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~-----------~~~g~~~~A~~~~~~al~~~p~~~~~~~ 139 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFI------------DGYINLAAAL-----------VAAGDMEGAVQAYVSALQYNPDLYCVRS 139 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCH------------HHHHHHHHHH-----------HHHSCSSHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHHcCcchH------------HHHHHHHHHH-----------HHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999876642 2334444444 3455669999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++.
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~----- 214 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK----- 214 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++
T Consensus 215 ----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---- 274 (388)
T 1w3b_A 215 ----------------EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY---- 274 (388)
T ss_dssp ----------------TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH----
T ss_pred ----------------HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----
Confidence 799999999999999999999999999999999999999999999999999999876544
Q ss_pred HHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHH
Q 012143 331 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGES 408 (470)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~ 408 (470)
..+|.++...|++++|+..+.+.+. |....++..+|
T Consensus 275 ------------------------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 275 ------------------------------------------CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp ------------------------------------------HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 4445555555555555555555332 33344455555
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 409 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 409 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+|++++++.|
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5555555555555555555555555555555555555555555555555555555443
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-41 Score=313.58 Aligned_cols=348 Identities=18% Similarity=0.184 Sum_probs=321.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-|..+...|+++++. ..+..++..+|+++..|+.+|.+ +...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 39 l~~~~~~~~~~~~a~-~~~~~a~~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSA-HFSTLAIKQNPLLAEAYSNLGNV-YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHH-HHHHHHHhcCCCchHHHHHHHHH-HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC
Confidence 456677889999999 99999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 170 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 170 (470)
+++|+..|+++++.+|+.. .++..++.+ +...|++++|+..|++++..+|+++.++.
T Consensus 117 ~~~A~~~~~~al~~~p~~~------------~~~~~l~~~-----------~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPDLY------------CVRSDLGNL-----------LKALGRLEEAKACYLKAIETQPNFAVAWS 173 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCT------------HHHHHHHHH-----------HHTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcH------------HHHHHHHHH-----------HHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999877632 222333333 34667789999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..++.++.
T Consensus 174 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----- 248 (388)
T 1w3b_A 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY----- 248 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++.
T Consensus 249 ----------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------- 305 (388)
T 1w3b_A 249 ----------------EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA------- 305 (388)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH-------
T ss_pred ----------------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH-------
Confidence 799999999999999999999999999999999999999999999999999998854
Q ss_pred HHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHH
Q 012143 331 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGES 408 (470)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~ 408 (470)
.++..+|.++...|++++|+..+.+.+. |....+++.+|
T Consensus 306 ---------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 306 ---------------------------------------DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp ---------------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4677788899999999999999999766 55567899999
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 012143 409 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 409 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 450 (470)
.++...|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999999988875
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-39 Score=309.85 Aligned_cols=380 Identities=13% Similarity=0.085 Sum_probs=330.0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 012143 7 VAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQ 86 (470)
Q Consensus 7 ~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 86 (470)
.....|..+...|++.+|+ ..+++++..+| ++..|..+|.+ +...|++++|+..++++++.+|+++.+++.+|.++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~-~~~~~al~~~p-~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAI-KYYNWALELKE-DPVFYSNLSAC-YVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHH-HHHHHHHHHCC-CHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHH-HHHHHHHhcCc-cHHHHHhHHHH-HHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 3445788999999999999 99999999999 58899999999 999999999999999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHHhhhhcccchhhhHHH----------------------------------------------
Q 012143 87 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSL---------------------------------------------- 120 (470)
Q Consensus 87 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------------------------------------------- 120 (470)
..|++++|+..|++++...|.+..... .....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIE--PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTH--HHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999988764322110 00000
Q ss_pred -----------------------HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh-----c---------Cc
Q 012143 121 -----------------------VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ-----S---------DT 163 (470)
Q Consensus 121 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~---------~p 163 (470)
...+...+..+. .+...|++++|+..|++++. . .|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNL--------YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH--------SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH--------HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 001111111100 01247999999999999998 5 36
Q ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.++.++..+|.++...|++++|+..|+++++.+|. +.++..+|.++...|++++|+..+++++..+|.+..++..++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHH
Confidence 66889999999999999999999999999999999 99999999999999999999999999999999999999988888
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
+. ..|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++...|+++
T Consensus 314 ~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 372 (514)
T 2gw1_A 314 NF---------------------ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372 (514)
T ss_dssp HH---------------------HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HH---------------------HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence 87 799999999999999999999999999999999999999999999999999988754
Q ss_pred cHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhh-
Q 012143 324 STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC- 402 (470)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 402 (470)
.++..+|.++...|++++|+..+.+.+...+..
T Consensus 373 ----------------------------------------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 373 ----------------------------------------------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred ----------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 356777888889999999999999866633332
Q ss_pred -------hHhhHHHHHHH---hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 403 -------AGAGESAFLDQ---ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 403 -------~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|+
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 78899999999 999999999999999999999999999999999999999999999999998775
No 4
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.1e-38 Score=307.65 Aligned_cols=385 Identities=13% Similarity=0.095 Sum_probs=318.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 10 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 10 ~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
..|..+...|++++|+ ..++++++.+|+++..|..+|.+ +...|++++|+..|+++++.+|+++.+++.+|.++...|
T Consensus 30 ~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAI-KYYQYAIELDPNEPVFYSNISAC-YISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHHTTCCC-CH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHH-HHHHHHHhhCCCCcHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence 3588899999999999 99999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhhcccchhhhH-----------------------------HHHH------------------
Q 012143 90 QPLKAVSSYEKAEEILLRCEADIARPELL-----------------------------SLVQ------------------ 122 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------------------------~~~~------------------ 122 (470)
++++|+..|+ ++...|+........... ....
T Consensus 108 ~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 108 NFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp CHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 9999999995 776666543211000000 0000
Q ss_pred ---------HhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH-------HHHHHHHHHHHcCChHHHH
Q 012143 123 ---------IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV-------VWNTLGLILLKSGRLQSSI 186 (470)
Q Consensus 123 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~~~~~~A~ 186 (470)
....+..++...+ .......|++++|+..+++++..+|+++. ++..+|.++...|++++|+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~---~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATD---EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSH---HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 0000000000000 00011235899999999999999999865 5778889999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
..|++++..+|+ +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 264 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------- 321 (537)
T 3fp2_A 264 VLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF--------------------- 321 (537)
T ss_dssp HHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH---------------------
Confidence 999999999999 9999999999999999999999999999999999999999988887
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHH
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 346 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (470)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------------- 378 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP----------------------- 378 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----------------------
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----------------------
Confidence 799999999999999999999999999999999999999999999999999998854
Q ss_pred hhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch--hhhh------HhhHHHHHHHh----
Q 012143 347 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--EECA------GAGESAFLDQA---- 414 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~------~~~l~~~~~~~---- 414 (470)
.++..+|.++...|++++|+..+.+.+... .... ++.+|.++...
T Consensus 379 -----------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 379 -----------------------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred -----------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 356677888999999999999999966533 3333 34556888888
Q ss_pred ------ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 415 ------SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 415 ------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|+.
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999999999998753
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-38 Score=309.42 Aligned_cols=409 Identities=14% Similarity=0.108 Sum_probs=336.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC----------------
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN---------------- 74 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------- 74 (470)
-+..+...|++++++ ..+.+++.. |.+...+..++.+ +...|++++|...|++ ..|..
T Consensus 123 l~~~~~~~g~~~~A~-~~~~~~~~~-~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 196 (597)
T 2xpi_A 123 LAQVYCCTGDYARAK-CLLTKEDLY-NRSSACRYLAAFC-LVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGI 196 (597)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHTCGG-GTCHHHHHHHHHH-HHHTTCHHHHHHHHCS---SCTTC----------CCCSSC
T ss_pred HHHHHHHcCcHHHHH-HHHHHHhcc-ccchhHHHHHHHH-HHHHhhHHHHHHHHhc---cCCcccccccccccccccccc
Confidence 355566777777777 677766554 5566777788888 8888888888888875 34554
Q ss_pred ---hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhh------------------------hc
Q 012143 75 ---AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH------------------------AQ 127 (470)
Q Consensus 75 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 127 (470)
+.+|+.+|.+|...|++++|+..|+++++.+|...... ..++.++. ..
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-----~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF-----DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH-----HHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 78999999999999999999999999999877642210 00000000 00
Q ss_pred cccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHH
Q 012143 128 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207 (470)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 207 (470)
..++..++.. +.+.|++++|+..|++++.. |.++.++..+|.++...|++++|+..|+++++.+|++..++..++
T Consensus 272 ~~~~~~~~~~----~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 346 (597)
T 2xpi_A 272 RSLYMLKLNK----TSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHL 346 (597)
T ss_dssp HHHHHTTSCT----TTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHH
T ss_pred HHHHHHHHHH----HcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHH
Confidence 0011222333 67889999999999999988 788999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++...|++++|+..+++++...|++...+..++.++. +.|++++|+.+|+++++.+|.
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL---------------------CVNKISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999888887 799999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCC
Q 012143 288 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 367 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (470)
+..+|..++.++...|++++|+..|++++...|++...+..++...... ..+..+...+...+.. .|.
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~----~~~ 473 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL--------GNILLANEYLQSSYAL----FQY 473 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHH----CCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh----CCC
Confidence 9999999999999999999999999999999999988888776644331 1122222233333322 345
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHhcc--------hh-hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHH
Q 012143 368 PPIAWAGFAAVQKTHHEVAAAFETEENELSK--------ME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIW 438 (470)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 438 (470)
++.+|..++.++...|++++|+..+.+.+.. .. ...+..+|.++...|++++|+..|+++++.+|+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 7889999999999999999999999996543 21 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 439 ANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 439 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
..+|.+|...|++++|..+|++++++.|+.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999998764
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.8e-37 Score=292.38 Aligned_cols=358 Identities=14% Similarity=0.110 Sum_probs=307.2
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHH
Q 012143 22 RSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKA 101 (470)
Q Consensus 22 ~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 101 (470)
.... ..+.+++..+|+++..++.+|.. +...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++
T Consensus 9 ~~~~-~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVD-LGTENLYFQSMADVEKHLELGKK-LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccc-ccccccccccHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444 67888999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch---HHHHHH------
Q 012143 102 EEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA---VVWNTL------ 172 (470)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l------ 172 (470)
++.+|... .++..++.++ ...|++++|+..|++++..+|+++ .++..+
T Consensus 87 l~~~p~~~------------~~~~~l~~~~-----------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 87 IQLKMDFT------------AARLQRGHLL-----------LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp HHHCTTCH------------HHHHHHHHHH-----------HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcH------------HHHHHHHHHH-----------HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 99876531 2334444443 456778999999999999999988 776655
Q ss_pred ------HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 173 ------GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 173 ------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++..+|.++.++..++.++.
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 222 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY- 222 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 6679999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHcCChhHHHHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL------------ANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~ 314 (470)
..|++++|+..|++++...|++...+..+ |.++...|++++|+.+|++
T Consensus 223 --------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 282 (450)
T 2y4t_A 223 --------------------QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282 (450)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --------------------HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 79999999999999999999999888776 9999999999999999999
Q ss_pred HHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHH
Q 012143 315 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN 394 (470)
Q Consensus 315 a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 394 (470)
++...|+++... ...+..+|.++...|++++|+..+.+
T Consensus 283 ~l~~~p~~~~~~------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 283 VMKTEPSIAEYT------------------------------------------VRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp HHHHCCSSHHHH------------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhcCCcchHHH------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999865321 13678899999999999999999999
Q ss_pred Hh--cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHH------------HHHcC-----ChHHHH
Q 012143 395 EL--SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA------------YYLTG-----DHRSSG 455 (470)
Q Consensus 395 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g-----~~~~A~ 455 (470)
.+ .|....++..+|.++...|++++|+..|+++++++|+++.++..++.+ |..+| +.+++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 65 466778899999999999999999999999999999999999999954 55556 667788
Q ss_pred HHHHH-HHHhhcc
Q 012143 456 KCLEK-VLMVYCS 467 (470)
Q Consensus 456 ~~~~~-al~~~~~ 467 (470)
+.|++ +++..|.
T Consensus 401 ~~y~~~~l~~~pd 413 (450)
T 2y4t_A 401 KAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHHHSCGG
T ss_pred HHHHHHHHHhCCC
Confidence 88887 7766654
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.8e-35 Score=268.67 Aligned_cols=315 Identities=14% Similarity=0.104 Sum_probs=261.9
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHH
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 120 (470)
..++.+|.. +...|++++|...|+++++.+|+++.+++.+|.++...|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------- 66 (359)
T 3ieg_A 4 EKHLELGKK-LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL---------------- 66 (359)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------
Confidence 445666666 666677777777777777777776777777777776666666666666666554
Q ss_pred HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC---
Q 012143 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--- 197 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--- 197 (470)
+|+++.++..+|.++...|++++|+..|+++++.+|
T Consensus 67 -----------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 105 (359)
T 3ieg_A 67 -----------------------------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105 (359)
T ss_dssp -----------------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHH
T ss_pred -----------------------------------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCccc
Confidence 566677788888888888888888888888888888
Q ss_pred CChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHH
Q 012143 198 NNCDCIGNL------------GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 265 (470)
Q Consensus 198 ~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (470)
+++.++..+ |.++...|++++|+..+++++...|.++.++..++.++.
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 165 (359)
T 3ieg_A 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI-------------------- 165 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH--------------------
Confidence 777777666 799999999999999999999999999999998888887
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchH
Q 012143 266 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 345 (470)
Q Consensus 266 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (470)
..|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|++...+..+....
T Consensus 166 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------ 232 (359)
T 3ieg_A 166 -KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------------ 232 (359)
T ss_dssp -HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------
T ss_pred -HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH------------
Confidence 7999999999999999999999999999999999999999999999999999999877554332211
Q ss_pred HhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhh----hhHhhHHHHHHHhccHHH
Q 012143 346 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEE----CAGAGESAFLDQASAVNV 419 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~ 419 (470)
.......+|.++...|++++|+..+.+.+. |... ..+..+|.++...|++++
T Consensus 233 ----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 233 ----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 123566778999999999999999999665 3322 346679999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 420 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 420 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|+.
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999998764
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.3e-35 Score=270.92 Aligned_cols=345 Identities=15% Similarity=0.112 Sum_probs=291.3
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHH
Q 012143 6 DVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMY 85 (470)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 85 (470)
+..-..|..+...|++++|+ ..+.++++.+|+++..++.+|.+ +...|++++|...++++++.+|+++.++..+|.++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADAL-SQFHAAVDGDPDNYIAYYRRATV-FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCcccHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 33445788899999999999 99999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHhCChhHHHHHHHHHHHHHh---hhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC
Q 012143 86 QRLGQPLKAVSSYEKAEEILL---RCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 162 (470)
Q Consensus 86 ~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 162 (470)
...|++++|+..|+++++..| ........-........+...+.+ +...|++++|+..+++++...
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-----------~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD-----------AFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH-----------HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999877 432211111000111112222333 456778899999999999999
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++...+..+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 230 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987765544
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH----IWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
+.. .......|.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+..|+++++.
T Consensus 231 ~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 231 VKK---------LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 321 122233567777999999999999999999999874 4667899999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
+|+++..+
T Consensus 302 ~~~~~~~~------------------------------------------------------------------------ 309 (359)
T 3ieg_A 302 EPDNVNAL------------------------------------------------------------------------ 309 (359)
T ss_dssp CTTCHHHH------------------------------------------------------------------------
T ss_pred CcccHHHH------------------------------------------------------------------------
Confidence 88864333
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 450 (470)
+.+|.++...|++++|+..|+++++++|+++.++..++.++..+++
T Consensus 310 ------~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 310 ------KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 3344477788899999999999999999999999999998876553
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.1e-35 Score=278.23 Aligned_cols=334 Identities=15% Similarity=0.097 Sum_probs=283.2
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCC
Q 012143 57 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 136 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (470)
...+...+.+++..+|.++.+++.+|..+...|++++|+..|+++++..|.+ ..++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~l~~~~----- 70 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN------------YIAYYRRATVF----- 70 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHH-----
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc------------HHHHHHHHHHH-----
Confidence 4456677888888999999999999999999999999999999999987653 23344444443
Q ss_pred CccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHH-------
Q 012143 137 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNL------- 206 (470)
Q Consensus 137 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l------- 206 (470)
...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++. .++..+
T Consensus 71 ------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 71 ------LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp ------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ------HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999988 776655
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHH
Q 012143 207 -----GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 207 -----a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
|.++...|++++|+..|++++...|.+..++..++.++. ..|++++|+.+|+++
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI---------------------KEGEPRKAISDLKAA 203 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HCCCHHHHHHHHHHH
Confidence 666999999999999999999999999999999888887 799999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcC
Q 012143 282 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG 361 (470)
Q Consensus 282 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (470)
++.+|+++.++..+|.++...|++++|+..|++++...|++...+..+....
T Consensus 204 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~---------------------------- 255 (450)
T 2y4t_A 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK---------------------------- 255 (450)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999876655443211
Q ss_pred CCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chh----hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 362 DPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KME----ECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
....+..+|.++...|++++|+..+.+.+. |.. ...+..+|.++...|++++|+..++++++.+|+++
T Consensus 256 ------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 329 (450)
T 2y4t_A 256 ------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329 (450)
T ss_dssp ------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 112456779999999999999999999765 333 23678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
.+|..+|.++...|++++|+.+|++++++.|+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 999999999999999999999999999987753
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-36 Score=293.24 Aligned_cols=405 Identities=12% Similarity=0.046 Sum_probs=336.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
.+..+.+.|++++|+ ..+.+++...|++ ..++.+|.+ +...|++++|...|++++.. |.++.++..+|.+|...|+
T Consensus 90 ~~~~~~~~g~~~~A~-~~~~~~~~~~p~~-~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 90 WRHDALMQQQYKCAA-FVGEKVLDITGNP-NDAFWLAQV-YCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHHHCCH-HHHHHHHHH-HHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCchHHH-HHHHHHHhhCCCc-hHHHHHHHH-HHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhh
Confidence 455677889999999 9999999999965 678889999 99999999999999998754 7789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhccc-------chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc
Q 012143 91 PLKAVSSYEKAEEILLRCEADI-------ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT 163 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 163 (470)
+++|+..|++. .|...... ..........++..++.+ +.+.|++++|+..|+++++.+|
T Consensus 166 ~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 166 WQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV-----------YTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHH-----------HHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999863 22210000 000001123344555544 3466778999999999999999
Q ss_pred cchHHHHHHHH--------------------------------------HHHHcCChHHHHHHHHHHhhcCCCChHHHHH
Q 012143 164 RQAVVWNTLGL--------------------------------------ILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 205 (470)
Q Consensus 164 ~~~~~~~~l~~--------------------------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 205 (470)
+++.++..++. .|...|++++|+..|+++++. |.+..++..
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~ 310 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLC 310 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHH
Confidence 99888777654 344678999999999999988 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
+|.++...|++++|+..|++++..+|.+..++..++.++. ..|++++|+..++++++..
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH---------------------ESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999988888877 7999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCC
Q 012143 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 365 (470)
Q Consensus 286 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (470)
|+++.++..+|.+|...|++++|+..|+++++..|.+...+..++...... .....+...+...+. ..
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~----~~ 437 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE--------GEHDQAISAYTTAAR----LF 437 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHH----TT
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHH----hC
Confidence 999999999999999999999999999999999999988888776644331 112222222333332 23
Q ss_pred CCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhc------CCCc-HH
Q 012143 366 IEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKA------DPKA-AH 436 (470)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~-~~ 436 (470)
|.++.+|..++.++...|++++|+..+.+.+. +.....+..+|.++...|++++|+..|+++++. +|++ ..
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 45678999999999999999999999999654 666788999999999999999999999999998 6765 78
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+|..+|.++...|++++|+..|++++++.|.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999998764
No 11
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=279.28 Aligned_cols=382 Identities=11% Similarity=0.028 Sum_probs=286.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhc---------CCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhC--------CC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEF---------GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKM--------PK 73 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~---------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------p~ 73 (470)
-|..+..+|++++|+ ..+++++++ +|.....|.++|.+ +...|++++|...+++++++. +.
T Consensus 57 Lg~~~~~~G~~~eAl-~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~-y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 57 LAYLKHLKGQNEAAL-ECLRKAEELIQQEHADQAEIRSLVTWGNYAWV-YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHHHHHhcCccccchHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 366778899999999 999999886 56667788999999 999999999999999998763 45
Q ss_pred ChhHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHH
Q 012143 74 NAHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 151 (470)
Q Consensus 74 ~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 151 (470)
.+.++..+|.++...| ++++|+.+|+++++++|++. .. +..++.++..++ ..++.++|
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~------~~------~~~~~~~~~~l~--------~~~~~~~a 194 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP------EF------TSGLAIASYRLD--------NWPPSQNA 194 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH------HH------HHHHHHHHHHHH--------HSCCCCCT
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH------HH------HHHHHHHHHHhc--------CchHHHHH
Confidence 6778888998887765 69999999999999987742 21 222222211111 12445789
Q ss_pred HHHHHHhhhcCccchHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 152 LSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+..++++++.+|+++.++..+|..+.. .|++++|+.++++++..+|..+.++..+|.+|...|++++|+..|++++
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 999999999999999999998877665 4678999999999999999999999999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 012143 228 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 307 (470)
Q Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 307 (470)
+.+|+++.++..+|.++..+...... ......+......+.+++|+..++++++.+|.++.++..+|.++...|++++
T Consensus 275 ~~~p~~~~~~~~lg~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 275 EYIPNNAYLHCQIGCCYRAKVFQVMN--LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHH--C------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 99999999999999988643211111 1111223333445568899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH-HhccccHH
Q 012143 308 SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV-QKTHHEVA 386 (470)
Q Consensus 308 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 386 (470)
|+.+|++++...|++.... .++..+|.+ ....|+++
T Consensus 353 A~~~~~kaL~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~ 389 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQ-------------------------------------------LLHLRYGNFQLYQMKCED 389 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHH-------------------------------------------HHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHhcCCCChHHH-------------------------------------------HHHHHHHHHHHHHCCCHH
Confidence 9999999999988743211 133344433 45678999
Q ss_pred HHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 387 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+|+..|.+++.-.+... ...+....+...+++++..+|+++.+|..+|.+|...|++++|+++|++|+++-+
T Consensus 390 ~Ai~~y~kal~i~~~~~--------~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 390 KAIHHFIEGVKINQKSR--------EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHSCCCCH--------HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHhcCcccH--------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999765333221 1223346667788999999999999999999999999999999999999999765
Q ss_pred c
Q 012143 467 S 467 (470)
Q Consensus 467 ~ 467 (470)
.
T Consensus 462 ~ 462 (472)
T 4g1t_A 462 L 462 (472)
T ss_dssp -
T ss_pred C
Confidence 4
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=254.67 Aligned_cols=249 Identities=11% Similarity=0.097 Sum_probs=218.5
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (470)
|++++|+..+++++..+|+++.++..+|.++...| ++++|+.+|+++++.+|.++.++..+|.++...|++++|+..|+
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 33445555555555557888899999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
+++...|++...+..+|.++. ..|++++|+.+++++++..|+++.++..+|.++...|+
T Consensus 150 ~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 208 (330)
T 3hym_B 150 TAAQLMKGCHLPMLYIGLEYG---------------------LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE 208 (330)
T ss_dssp HHHHHTTTCSHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccccHHHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc
Confidence 999999999999888888877 79999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcccc
Q 012143 305 HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE 384 (470)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (470)
+++|+..+++++...|.... ....+..+.++..+|.++...|+
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~-------------------------------------~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGN-------------------------------------EVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSC-------------------------------------SCTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhccc-------------------------------------cccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998765321 01112345689999999999999
Q ss_pred HHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCChH
Q 012143 385 VAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAY-YLTGDHR 452 (470)
Q Consensus 385 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~ 452 (470)
+++|+..+.+.+. |....++..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999654 666788999999999999999999999999999999999999999998 5666654
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=270.55 Aligned_cols=354 Identities=15% Similarity=0.063 Sum_probs=310.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC----------------
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN---------------- 74 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------- 74 (470)
-|..+...|++++|+ ..++++++.+|++..+|+.+|.+ +...|++++|...|++++..+|.+
T Consensus 45 la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (514)
T 2gw1_A 45 LSACYVSVGDLKKVV-EMSTKALELKPDYSKVLLRRASA-NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122 (514)
T ss_dssp HHHHHHHHTCHHHHH-HHHHHHHHHCSCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHH-HHHHHHhccChHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 577888999999999 99999999999999999999999 999999999999999999888633
Q ss_pred ---------------------------------------------------------------hhHHHHHHHHHHH---h
Q 012143 75 ---------------------------------------------------------------AHAHFLLGLMYQR---L 88 (470)
Q Consensus 75 ---------------------------------------------------------------~~~~~~l~~~~~~---~ 88 (470)
+.+++.+|.++.. .
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (514)
T 2gw1_A 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP 202 (514)
T ss_dssp HHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT
T ss_pred HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh
Confidence 6677888888886 8
Q ss_pred CChhHHHHHHHHHHH-----H--HhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc
Q 012143 89 GQPLKAVSSYEKAEE-----I--LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS 161 (470)
Q Consensus 89 g~~~~A~~~~~~al~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 161 (470)
|++++|+..|+++++ . .|.+. ........++..++.++ ...|++++|+..+++++..
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----------~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDE-----KLKEKLAISLEHTGIFK-----------FLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCH-----HHHHHHHHHHHHHHHHH-----------HHSSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCcccc-----ccChHHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHHhh
Confidence 999999999999998 3 22211 00112234455555543 4567789999999999999
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+|. +.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++...|.+..++..++
T Consensus 267 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 345 (514)
T 2gw1_A 267 FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345 (514)
T ss_dssp CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHH
T ss_pred Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.++. ..|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++...|+
T Consensus 346 ~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 346 CLAY---------------------RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHTT---------------------TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHH---------------------HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 8876 7999999999999999999999999999999999999999999999999998887
Q ss_pred cccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc---cccHHHHHHHHHHHhc-
Q 012143 322 CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT---HHEVAAAFETEENELS- 397 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~- 397 (470)
+.... ....++..+|.++.. .|++++|+..+.+.+.
T Consensus 405 ~~~~~----------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 405 LDGIY----------------------------------------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp SSSCS----------------------------------------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred cchHH----------------------------------------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 54210 112478889999999 9999999999999654
Q ss_pred -chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012143 398 -KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 444 (470)
Q Consensus 398 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 444 (470)
|....++..+|.++...|++++|+..|+++++++|+++.++..+...
T Consensus 445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 66668899999999999999999999999999999999988777544
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=5.8e-34 Score=274.63 Aligned_cols=349 Identities=14% Similarity=0.039 Sum_probs=289.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHH-----------
Q 012143 10 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAH----------- 78 (470)
Q Consensus 10 ~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~----------- 78 (470)
.-|..+..+|++++|+ ..+.++++.+|++...++.+|.+ +...|++++|...|+ ++..+|+....+
T Consensus 64 ~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (537)
T 3fp2_A 64 NISACYISTGDLEKVI-EFTTKALEIKPDHSKALLRRASA-NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNK 140 (537)
T ss_dssp HHHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCchHHHHHHHHHH-HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHH
Confidence 3577889999999999 99999999999999999999999 999999999999996 777777654422
Q ss_pred ---------------------------------------------------------HHH--------HHHHHHhCChhH
Q 012143 79 ---------------------------------------------------------FLL--------GLMYQRLGQPLK 93 (470)
Q Consensus 79 ---------------------------------------------------------~~l--------~~~~~~~g~~~~ 93 (470)
..+ +......|++++
T Consensus 141 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 141 QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 111 222223358899
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 173 (470)
|+..|+++++..|++.. .....+.++..++.+ +...|++++|+..+++++..+|+ +.++..+|
T Consensus 221 A~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~g~~-----------~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~ 283 (537)
T 3fp2_A 221 STDMYHSLLSANTVDDP-----LRENAALALCYTGIF-----------HFLKNNLLDAQVLLQESINLHPT-PNSYIFLA 283 (537)
T ss_dssp HHHHHHHHHC--CCCHH-----HHHHHHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCcch-----hhHHHHHHHHHHHHH-----------HHhcccHHHHHHHHHHHHhcCCC-chHHHHHH
Confidence 99999999988776421 112223344444444 45667789999999999999999 99999999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 253 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (470)
.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.++.++..++.++.
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-------- 355 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY-------- 355 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH--------
T ss_pred HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 012143 254 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 333 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 333 (470)
..|++++|+.+++++++..|+++.++..+|.++...|++++|+..|++++...|++...+..+
T Consensus 356 -------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---- 418 (537)
T 3fp2_A 356 -------------KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI---- 418 (537)
T ss_dssp -------------HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT----
T ss_pred -------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH----
Confidence 799999999999999999999999999999999999999999999999999988766543322
Q ss_pred HHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcc----------ccHHHHHHHHHHHhc--chhh
Q 012143 334 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH----------HEVAAAFETEENELS--KMEE 401 (470)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~--~~~~ 401 (470)
..+..++.++... |++++|+..+.+.+. |...
T Consensus 419 ------------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 419 ------------------------------------GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ------------------------------------HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH
Confidence 2345566777777 999999999999654 6667
Q ss_pred hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHH
Q 012143 402 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWA 439 (470)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 439 (470)
.++..+|.++...|++++|+.+|++++++.|+.+....
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 88999999999999999999999999999999876644
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=3.6e-33 Score=255.72 Aligned_cols=294 Identities=17% Similarity=0.172 Sum_probs=207.0
Q ss_pred hhhhcChhhHHH-HHHHHHHhCCCCh----hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhh
Q 012143 51 SSREEKVSSLKT-GLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH 125 (470)
Q Consensus 51 ~~~~~~~~~A~~-~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 125 (470)
+...|++++|.. .+++++...|.++ ..++.+|.++...|++++|+..|+++++.+|... .++.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~ 102 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM------------EAWQ 102 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH------------HHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHH
Confidence 444456677776 7777666666653 4567777777777777777777777776544321 1222
Q ss_pred hccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHH-
Q 012143 126 AQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG- 204 (470)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~- 204 (470)
.++.++ ...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|.+...+.
T Consensus 103 ~l~~~~-----------~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (368)
T 1fch_A 103 YLGTTQ-----------AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171 (368)
T ss_dssp HHHHHH-----------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred HHHHHH-----------HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 222222 23344566666666666666777777778888888888888888888888887777766554
Q ss_pred ---------------HHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 205 ---------------NLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 205 ---------------~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
.++.++ ..|++++|+..|++++..+|. ++.++..+|.++. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~---------------------~ 229 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN---------------------L 229 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH---------------------H
T ss_pred HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH---------------------H
Confidence 455555 777888888888888888887 6677777776666 5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHh
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQL 347 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (470)
.|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..
T Consensus 230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------- 286 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR----------------------- 286 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------------
T ss_pred cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----------------------
Confidence 778888888888888888888888888888888888888888888888877776432
Q ss_pred hhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHH
Q 012143 348 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAA 427 (470)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 427 (470)
+++.+|.++...|++++|+..|+++
T Consensus 287 -------------------------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 287 -------------------------------------------------------SRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -------------------------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2334455777888889999999999
Q ss_pred HhcCCCc-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 428 LKADPKA-----------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 428 l~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+++.|++ +.+|..+|.++..+|++++|..+++++++.+..
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 9988887 899999999999999999999999999988754
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=241.98 Aligned_cols=280 Identities=13% Similarity=0.038 Sum_probs=249.6
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccC
Q 012143 65 VHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE 144 (470)
Q Consensus 65 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (470)
...+...|+++..+..+|..++..|++++|+..|+++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------------------------------------- 51 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK---------------------------------------- 51 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------------------------
Confidence 3455566778888888888888888888888888777654
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC-CHHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAKCF 223 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~ 223 (470)
+|.++.++..++.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+..|
T Consensus 52 -----------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 114 (330)
T 3hym_B 52 -----------------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL 114 (330)
T ss_dssp -----------------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred -----------------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 56667788889999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 224 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 224 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
++++..+|.++.++..+|.++. ..|++++|+..|+++++..|++..++..+|.++...|
T Consensus 115 ~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 115 SKATTLEKTYGPAWIAYGHSFA---------------------VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHTTCTTCTHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhCCccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 9999999999999999988887 7999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccc
Q 012143 304 DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH 383 (470)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (470)
++++|+..+++++...|++. .++..+|.++...|
T Consensus 174 ~~~~A~~~~~~al~~~~~~~----------------------------------------------~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPEDP----------------------------------------------FVMHEVGVVAFQNG 207 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCH----------------------------------------------HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCCh----------------------------------------------HHHHHHHHHHHHcc
Confidence 99999999999999998853 46778888999999
Q ss_pred cHHHHHHHHHHHhc-----------chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 012143 384 EVAAAFETEENELS-----------KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 452 (470)
Q Consensus 384 ~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 452 (470)
++++|+..+.+.+. +....++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+++
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 287 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE 287 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH
Confidence 99999999999765 3334688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC
Q 012143 453 SSGKCLEKVLMVYCSS 468 (470)
Q Consensus 453 ~A~~~~~~al~~~~~~ 468 (470)
+|+.+|++++++.|+.
T Consensus 288 ~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 288 NAVDYFHTALGLRRDD 303 (330)
T ss_dssp HHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHHHccCCCc
Confidence 9999999999987753
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.1e-31 Score=248.83 Aligned_cols=332 Identities=10% Similarity=0.024 Sum_probs=186.3
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVARK---------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEAD 111 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 111 (470)
..+..+|.+ +...|++++|++.|++++++ +|....++..+|.+|..+|++++|+.+|++++++.+.....
T Consensus 52 ~~yn~Lg~~-~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 52 TMCNLLAYL-KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345567777 77777777777777777664 45566677777777777777777777777777765432110
Q ss_pred cchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc--CChHHHHHHH
Q 012143 112 IARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS--GRLQSSISVL 189 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~A~~~~ 189 (470)
..+..+.++..+|.++... +++++|+.+|
T Consensus 131 -------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~ 161 (472)
T 4g1t_A 131 -------------------------------------------------YRIESPELDCEEGWTRLKCGGNQNERAKVCF 161 (472)
T ss_dssp -------------------------------------------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred -------------------------------------------------cchhhHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 1223345555555554443 3566777777
Q ss_pred HHHhhcCCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 190 SSLLAVDPNNCDCIGNLGIAYF---QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 190 ~~a~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
+++++++|+++.++..+|.++. ..++.++|++.++++++++|+++.++..++..+.. ++.
T Consensus 162 ~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~-----------------~~~ 224 (472)
T 4g1t_A 162 EKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK-----------------MRE 224 (472)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH-----------------CC-
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH-----------------HHh
Confidence 7777777777666666666643 34555666777777777777766666666655432 112
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHH
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 346 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (470)
..|++++|+.++++++..+|+.+.++..+|.++...|++++|+..|+++++.+|++..++..++............
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~---- 300 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN---- 300 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhh----
Confidence 4556666777777777777777777777777777777777777777777777777666666655433221110000
Q ss_pred hhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh--cchhhhhHhhHHHHHHHhccHHHHHHHH
Q 012143 347 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECL 424 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 424 (470)
......+......+.+++|+..+.+.+ +|....++..+|.++...|++++|+.+|
T Consensus 301 -----------------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 301 -----------------------LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp -----------------------C------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 001111111222233444555554432 2344444555555555555555555555
Q ss_pred HHHHhcCCCcHH---HHHHHHHHH-HHcCChHHHHHHHHHHHHhhc
Q 012143 425 LAALKADPKAAH---IWANLANAY-YLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 425 ~~al~~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~~~ 466 (470)
+++++++|++.. ++..+|.++ ...|++++|+.+|++++++.|
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 555555554422 234444332 345555555555555555443
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=6.7e-32 Score=246.95 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHH----------HHHHHHcCCHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL----------GIAYFQSGDME 217 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l----------a~~~~~~g~~~ 217 (470)
+++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++..|++...+..+ |.++...|+++
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHH
Confidence 34444444444444555666666666666666666666666666666666554444433 66666666666
Q ss_pred HHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 218 QSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
+|+..|++++..+|. ++.++..+|.++. ..|++++|+.+|+++++..|+++.++..+
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFH---------------------LSGEFNRAIDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 666666666666666 5666666665555 46666666666666666666666666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHH
Q 012143 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 375 (470)
Q Consensus 296 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 375 (470)
|.++...|++++|+..|+++++.+|++..+
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------------------------------------- 283 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQPGFIRS-------------------------------------------------- 283 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHH--------------------------------------------------
Confidence 666666666666666666666666654322
Q ss_pred HHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC------------cHHHHHHHHH
Q 012143 376 AAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK------------AAHIWANLAN 443 (470)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~ 443 (470)
++.+|.++...|++++|+.+|++++++.|+ +..+|..++.
T Consensus 284 ----------------------------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (365)
T 4eqf_A 284 ----------------------------RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI 335 (365)
T ss_dssp ----------------------------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHH
Confidence 222333455555666666666666666554 3567788888
Q ss_pred HHHHcCChHHHHHHHHHHHHhhc
Q 012143 444 AYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 444 ~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
++..+|+.+.|....++.++.+.
T Consensus 336 ~~~~~g~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 336 ALSLMDQPELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHTCHHHHHHHHTTCCGGGT
T ss_pred HHHHcCcHHHHHHHHHhhHHHHH
Confidence 88888888888877777666553
No 19
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.98 E-value=4.7e-31 Score=238.86 Aligned_cols=268 Identities=12% Similarity=0.080 Sum_probs=184.4
Q ss_pred HHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcc
Q 012143 67 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 146 (470)
Q Consensus 67 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (470)
++..+|+++.++..+|.++...|++++|+..|++++.++|+. ..+|..++.++. ..|
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~------------~~a~~~~g~~l~-----------~~g 145 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------------YTVWHFRRVLLK-----------SLQ 145 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HTT
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC------------HHHHHHHHHHHH-----------Hcc
Confidence 345677777777777777777777888888877777775543 122333333332 223
Q ss_pred c-HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 147 E-LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 147 ~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
+ +++|+..|++++..+|+++.+|+.+|.++..+|++++|+.+|+++++++|++..+|+.+|.++..+|++++|+..|++
T Consensus 146 ~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 2 466666666666667777778888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA-----KECLLAALKADPKAAHIWANLANAYY 300 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-----~~~~~~~~~~~p~~~~~~~~la~~~~ 300 (470)
+++++|++..+|..+|.++.. ..|.+++| +.+|++++.++|++..+|..+|.++.
T Consensus 226 al~l~P~~~~a~~~lg~~l~~--------------------l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 226 LLKEDVRNNSVWNQRYFVISN--------------------TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH--------------------TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHH--------------------hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 888888888888777777762 14444555 47778888888888888888887777
Q ss_pred HcC--ChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH
Q 012143 301 LTG--DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 378 (470)
Q Consensus 301 ~~g--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (470)
..| ++++|+..+.++ +.+|++.. ++..+|.+
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~~p~~~~----------------------------------------------al~~La~~ 318 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QPSHSSPY----------------------------------------------LIAFLVDI 318 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TTTCCCHH----------------------------------------------HHHHHHHH
T ss_pred ccCccchHHHHHHHHHh-ccCCCCHH----------------------------------------------HHHHHHHH
Confidence 777 577777777766 65665433 23333333
Q ss_pred HhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhcc-HHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHc
Q 012143 379 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASA-VNVAKECLLAA-LKADPKAAHIWANLANAYYLT 448 (470)
Q Consensus 379 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 448 (470)
+...|+... ...++ +++|+.+|+++ ++++|.....|..++..+..+
T Consensus 319 ~~~~~~~~~------------------------~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 319 YEDMLENQC------------------------DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHTTC------------------------SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhcccc------------------------cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 332210000 00022 58999999999 999999999999999988654
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.98 E-value=9.2e-31 Score=235.52 Aligned_cols=272 Identities=12% Similarity=0.127 Sum_probs=214.7
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
+...++.+|.. +...|++++|...|+++++.+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 20 ~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------------- 84 (327)
T 3cv0_A 20 YHENPMEEGLS-MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-------------- 84 (327)
T ss_dssp GSSCHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------
Confidence 34456677777 777777777777777777777777777777777777777777777777666654
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 85 -------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 85 -------------------------------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp -------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred -------------------------------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4566777888888888888888888888888888888
Q ss_pred ChHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhh
Q 012143 199 NCDCIGNL--------------GI-AYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 263 (470)
Q Consensus 199 ~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (470)
+...+..+ +. ++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~------------------ 183 (327)
T 3cv0_A 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN------------------ 183 (327)
T ss_dssp TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH------------------
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH------------------
Confidence 87777666 66 6778888888888888888888888888888877776
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCc
Q 012143 264 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 343 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 343 (470)
..|++++|+.+++++++..|+++.++..+|.++...|++++|+..|+++++..|++..+
T Consensus 184 ---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------ 242 (327)
T 3cv0_A 184 ---LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV------------------ 242 (327)
T ss_dssp ---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH------------------
T ss_pred ---HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH------------------
Confidence 68888888888888888888888888888888888888888888888888888775432
Q ss_pred hHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHH
Q 012143 344 TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKEC 423 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 423 (470)
++.+|.++...|++++|+..
T Consensus 243 ------------------------------------------------------------~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 243 ------------------------------------------------------------MYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccHHHHHHH
Confidence 22344467778888889999
Q ss_pred HHHHHhcCCC------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 424 LLAALKADPK------------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 424 ~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|+++++..|+ ++.++..+|.++...|++++|...++++++.++.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 9999998888 7899999999999999999999999999888764
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=2.8e-30 Score=236.17 Aligned_cols=273 Identities=17% Similarity=0.168 Sum_probs=238.2
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 8 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 8 ~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
.-..|..+...|++++|+ ..++++++.+|++...|+.+|.+ +...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 68 ~~~~~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTI-LFMEAAILQDPGDAEAWQFLGIT-QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHH-HHHHHHHHhCcCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 344688899999999999 99999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc--c
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR--Q 165 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~ 165 (470)
.|++++|+..|+++++..|........ ....+.++..++.. +...|++++|+..+++++..+|. +
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~---------~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKN---------KKGSPGLTRRMSKS----PVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC--------------------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhh---------hccchHHHHHHHHH----HhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 999999999999999997764321100 00112233333444 67889999999999999999999 8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCChhHHHHHHH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYYLTGDHRSSGKCLE 313 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~ 313 (470)
..|++++|+.+|++++++.|+ +..+|..++.++...|+.+.+..+..
T Consensus 293 ---------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 293 ---------------------NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp ---------------------HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred ---------------------HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 799999999999999999877 36889999999999999998887776
Q ss_pred HHH
Q 012143 314 KAA 316 (470)
Q Consensus 314 ~a~ 316 (470)
+.+
T Consensus 352 ~~l 354 (365)
T 4eqf_A 352 GDL 354 (365)
T ss_dssp TCC
T ss_pred hhH
Confidence 643
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=8.9e-30 Score=233.13 Aligned_cols=279 Identities=16% Similarity=0.142 Sum_probs=242.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 88 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 88 (470)
...|..+...|++.+|+ ..+.++++.+|++...+..+|.+ +...|++++|...|+++++.+|+++.++..+|.++...
T Consensus 68 ~~~~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAV-LLFEAAVQQDPKHMEAWQYLGTT-QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHSCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 35688899999999999 99999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc--ch
Q 012143 89 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR--QA 166 (470)
Q Consensus 89 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~ 166 (470)
|++++|+..|++++...|............ ............++. .+..|++++|+..+++++..+|. ++
T Consensus 146 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEG---AGGAGLGPSKRILGS-----LLSDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC------------------CTTHH-----HHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHH---hhhhcccHHHHHHHH-----HhhcccHHHHHHHHHHHHHhCcCcccH
Confidence 999999999999999877654322100000 000000000111111 23778999999999999999999 89
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~- 296 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI- 296 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-----------AHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
..|++++|+.+|++++.+.|++ ..+|..+|.++...|++++|..++.++
T Consensus 297 --------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 297 --------------------NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp --------------------HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred --------------------HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 7999999999999999999987 899999999999999999999999877
Q ss_pred Hhc
Q 012143 316 AKL 318 (470)
Q Consensus 316 ~~~ 318 (470)
+..
T Consensus 357 l~~ 359 (368)
T 1fch_A 357 LST 359 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=9.7e-28 Score=227.83 Aligned_cols=374 Identities=15% Similarity=0.077 Sum_probs=283.5
Q ss_pred HHHHHHHhcCCCCcchhhhcccchhhh----hcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH----hCChhHHHHHH
Q 012143 27 SKMDSALEFGVDADGDQSGLGTSSSSR----EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR----LGQPLKAVSSY 98 (470)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~ 98 (470)
..+.++.+ +.++.+++.+|.. +.. .+++++|...|+++.+. .++.+++.+|.+|.. .+++++|+.+|
T Consensus 28 ~~~~~~a~--~g~~~a~~~lg~~-y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 28 EQLKQKAE--SGEAKAQLELGYR-YFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHH-HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHH-HHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 44444433 5677888888888 777 78888999999888765 678888889999888 88889999999
Q ss_pred HHHHHHHhhhhcccchhhhHHHHHHhhhccccccc-cCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHH
Q 012143 99 EKAEEILLRCEADIARPELLSLVQIHHAQCLLPES-SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILL 177 (470)
Q Consensus 99 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 177 (470)
+++.+... + .++..++.++.. .|.. +++++|+..|+++... +++.+++.+|.+|.
T Consensus 103 ~~a~~~~~--------~------~a~~~Lg~~y~~g~g~~--------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 103 KKAALKGL--------P------QAQQNLGVMYHEGNGVK--------VDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF 158 (490)
T ss_dssp HHHHHTTC--------H------HHHHHHHHHHHHTSSSC--------CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHCCC--------H------HHHHHHHHHHHcCCCCC--------CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 98877421 1 122333333332 2221 4568899999888764 56788888998888
Q ss_pred H----cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 178 K----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 178 ~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..++.++....+
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIG 234 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Confidence 8 78899999999988875 568888889988888 88899999999888764 567788888888873100
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCcccH
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
..+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++.+. .++.+
T Consensus 235 -----------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a 293 (490)
T 2xm6_A 235 -----------------VTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG 293 (490)
T ss_dssp -----------------SCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence 267888888888888865 457888888888888 88888888888888765 45556
Q ss_pred HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccc---cHHHHHHHHHHHhcchhhh
Q 012143 326 RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH---EVAAAFETEENELSKMEEC 402 (470)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~ 402 (470)
.+.++........... .....+...+...... ..+.++..+|.++...| ++++|+..++++.....+.
T Consensus 294 ~~~Lg~~y~~~~~g~~---~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~ 364 (490)
T 2xm6_A 294 QYYLAHLYDKGAEGVA---KNREQAISWYTKSAEQ------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKA 364 (490)
T ss_dssp HHHHHHHHHHCBTTBC---CCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCCCc---CCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHH
Confidence 6666654433211111 1222333333333332 34578899999998755 8999999999988888889
Q ss_pred hHhhHHHHHHH----hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 012143 403 AGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 403 ~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 465 (470)
+++.+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999 89999999999999986 468999999999998 899999999999999987
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.4e-29 Score=227.69 Aligned_cols=281 Identities=14% Similarity=0.109 Sum_probs=245.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 88 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 88 (470)
-..|..+...|++++|+ ..++++++.+|++...+..+|.+ +...|++++|...++++++.+|.++.++..+|.++...
T Consensus 25 ~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAA-LAFEAVCQAAPEREEAWRSLGLT-QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 34678899999999999 99999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccccccc-CC-CccccccCcccHHHHHHHHHHhhhcCccch
Q 012143 89 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS-GD-NSLDKELEPEELEEILSKLKESMQSDTRQA 166 (470)
Q Consensus 89 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 166 (470)
|++++|+..|++++...|......... ..... .......+ +. . +...|++++|+..+++++...|.++
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVN-----LQADV-DIDDLNVQSEDFF----FAAPNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------------CC----TTSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-----hHHHH-HHHHHHHHHHhHH----HHHcccHHHHHHHHHHHHhhCCCCH
Confidence 999999999999999876643211000 00000 00000000 11 1 5678999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|++..++..++.++.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~- 251 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS- 251 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 314 (470)
..|++++|+.+|++++...|+ ++.++..+|.++...|++++|...+++
T Consensus 252 --------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 252 --------------------NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred --------------------HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 799999999999999999999 799999999999999999999999998
Q ss_pred HHhcCCCc
Q 012143 315 AAKLEPNC 322 (470)
Q Consensus 315 a~~~~p~~ 322 (470)
++...|+.
T Consensus 312 ~l~~~~~~ 319 (327)
T 3cv0_A 312 NVEPFAKE 319 (327)
T ss_dssp CSHHHHHH
T ss_pred HHHhcchh
Confidence 88766553
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=2.9e-29 Score=227.17 Aligned_cols=242 Identities=12% Similarity=0.033 Sum_probs=216.9
Q ss_pred HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCChH
Q 012143 157 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 157 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~ 235 (470)
.++..+|+++.++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 45778999999999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+|..+|.++. ..|++++|+.+|+++++++|++..+|.++|.++..+|++++|+.+|+++
T Consensus 168 a~~~~g~~~~---------------------~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 168 VWHHRRVLVE---------------------WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp HHHHHHHHHH---------------------HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999988 6899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc-cccHHHH-----H
Q 012143 316 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT-HHEVAAA-----F 389 (470)
Q Consensus 316 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~ 389 (470)
++++|++.. +|..+|.++.. .|..++| +
T Consensus 227 l~l~P~~~~----------------------------------------------a~~~lg~~l~~l~~~~~eA~~~~el 260 (382)
T 2h6f_A 227 LKEDVRNNS----------------------------------------------VWNQRYFVISNTTGYNDRAVLEREV 260 (382)
T ss_dssp HHHCTTCHH----------------------------------------------HHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHhCCCCHH----------------------------------------------HHHHHHHHHHHhcCcchHHHHHHHH
Confidence 999999765 45555555555 3443555 4
Q ss_pred HHHHHH--hcchhhhhHhhHHHHHHHhc--cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--------C-hHHHHH
Q 012143 390 ETEENE--LSKMEECAGAGESAFLDQAS--AVNVAKECLLAALKADPKAAHIWANLANAYYLTG--------D-HRSSGK 456 (470)
Q Consensus 390 ~~~~~~--~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~ 456 (470)
..+.++ ++|....+|+.+|.++...| ++++|+..++++ +.+|+++.++..+|.+|..+| + +++|++
T Consensus 261 ~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 261 QYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 667774 45777788999999999988 699999999998 999999999999999999885 3 589999
Q ss_pred HHHHH-HHhhc
Q 012143 457 CLEKV-LMVYC 466 (470)
Q Consensus 457 ~~~~a-l~~~~ 466 (470)
+|+++ +++-|
T Consensus 340 ~~~~l~~~~DP 350 (382)
T 2h6f_A 340 LCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHTTCG
T ss_pred HHHHHHHHhCc
Confidence 99998 77654
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=4.2e-29 Score=209.86 Aligned_cols=211 Identities=16% Similarity=0.185 Sum_probs=172.4
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
++...... .+......|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ ++
T Consensus 82 ~~~~~~~~----------~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~ 150 (217)
T 2pl2_A 82 AYVALYRQ----------AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT 150 (217)
T ss_dssp HHHHHHHT----------CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHhhhh----------hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence 98831000 00011112999999999999999999999999999999999999999999999999998 64
Q ss_pred ccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhh
Q 012143 323 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 402 (470)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 402 (470)
+.++
T Consensus 151 ~~~~---------------------------------------------------------------------------- 154 (217)
T 2pl2_A 151 PEIR---------------------------------------------------------------------------- 154 (217)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred hHHH----------------------------------------------------------------------------
Confidence 4332
Q ss_pred hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012143 403 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462 (470)
Q Consensus 403 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 462 (470)
+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 155 --~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 --SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp --HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 2344477888999999999999999999999999999999999999999999998764
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=1.1e-28 Score=207.35 Aligned_cols=200 Identities=18% Similarity=0.201 Sum_probs=153.1
Q ss_pred CCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 37 VDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
|+++..++.+|.. +...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++
T Consensus 2 p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------------ 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQ-LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR------------ 68 (217)
T ss_dssp --CCHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred CCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence 6667777777777 777888888888888888888888888888888887777777777777777665
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc-----------CChHHH
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS-----------GRLQSS 185 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------~~~~~A 185 (470)
+|+++.++..+|.++... |++++|
T Consensus 69 ---------------------------------------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 69 ---------------------------------------------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp ---------------------------------------------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ---------------------------------------------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence 566677777778888777 889999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHH
Q 012143 186 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 265 (470)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (470)
+..|+++++++|+++.++..+|.++..+|++++|+..|+++++++ +++.++..+|.++.
T Consensus 104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~-------------------- 162 (217)
T 2pl2_A 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYL-------------------- 162 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHH--------------------
Confidence 999999999999988899999999999999999999999999888 88888888888777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 266 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 266 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 163 -~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 163 -SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred -HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 68889999999999999999999999999999999999999988888764
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=2.6e-26 Score=217.97 Aligned_cols=343 Identities=13% Similarity=0.039 Sum_probs=277.2
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHH----hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccc-c
Q 012143 60 LKTGLVHVARKMPKNAHAHFLLGLMYQR----LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES-S 134 (470)
Q Consensus 60 A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 134 (470)
+...+.++. .+.++.+++.+|.+|.. .+++++|+.+|+++.+... + .+++.+|.++.. .
T Consensus 26 ~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~--------~------~a~~~Lg~~y~~g~ 89 (490)
T 2xm6_A 26 NLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY--------T------PAEYVLGLRYMNGE 89 (490)
T ss_dssp CHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------H------HHHHHHHHHHHHTS
T ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--------H------HHHHHHHHHHHcCC
Confidence 355555544 47889999999999999 8999999999999987521 1 223334444433 2
Q ss_pred CCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 135 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 135 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
|.. +++++|+.+|+++... .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|
T Consensus 90 g~~--------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 157 (490)
T 2xm6_A 90 GVP--------QDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAY 157 (490)
T ss_dssp SSC--------CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred CCC--------CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 221 4569999999999875 578999999999999 89999999999999875 5789999999999
Q ss_pred HH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 211 FQ----SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 211 ~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
.. .+++++|+..|+++++. .++.++..+|.++.... ...+++++|+.+|+++.+.
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~-----------------g~~~~~~~A~~~~~~a~~~-- 216 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGL-----------------GVERNDAISAQWYRKSATS-- 216 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS-----------------SSCCCHHHHHHHHHHHHHT--
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCC-----------------CCCcCHHHHHHHHHHHHHC--
Confidence 98 89999999999999875 58999999999987311 0279999999999999975
Q ss_pred CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 287 KAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 287 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
.++.++..+|.+|.. .+++++|+.+|++++... ++.+.+.++........ .. .....+...+......
T Consensus 217 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~-~~---~d~~~A~~~~~~a~~~-- 288 (490)
T 2xm6_A 217 GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLA-GA---KEPLKALEWYRKSAEQ-- 288 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTTT-SS---CCHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCC-CC---CCHHHHHHHHHHHHHc--
Confidence 468999999999998 899999999999999764 45666666665443111 11 2223333333333332
Q ss_pred CCCCCcHHHHHHHHHHHhcc-----ccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhc---cHHHHHHHHHHHHhcCCCc
Q 012143 363 PVQIEPPIAWAGFAAVQKTH-----HEVAAAFETEENELSKMEECAGAGESAFLDQAS---AVNVAKECLLAALKADPKA 434 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~ 434 (470)
.++.++..+|.++... +++++|+..+.++....+..+++.+|.++...| ++++|+.+|+++++. .+
T Consensus 289 ----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~ 362 (490)
T 2xm6_A 289 ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE 362 (490)
T ss_dssp ----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC
T ss_pred ----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC
Confidence 3567999999999987 899999999999998888899999999999865 899999999999987 67
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 012143 435 AHIWANLANAYYL----TGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 435 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 465 (470)
+.+++.+|.+|.. .+++++|+.+|+++++..
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 9999999999999 899999999999998853
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=1.8e-26 Score=221.35 Aligned_cols=408 Identities=12% Similarity=0.019 Sum_probs=266.3
Q ss_pred HHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 012143 29 MDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC 108 (470)
Q Consensus 29 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 108 (470)
++++++.+|.+...|..++.. ...|++++|...|+++++.+|.++.+|..+|..+...|++++|...|++++...|+.
T Consensus 2 le~al~~~P~~~~~w~~l~~~--~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE--AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH--HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhCCCCHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 567778888888888877754 457788888888888888888888888888888888888888888888888876632
Q ss_pred hcccchhhhH-----------HHHHHhhhccccccccCCC--c-------cccc---------cCcccHHHHHHHHHHhh
Q 012143 109 EADIARPELL-----------SLVQIHHAQCLLPESSGDN--S-------LDKE---------LEPEELEEILSKLKESM 159 (470)
Q Consensus 109 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~-------~~~~---------~~~~~~~~A~~~~~~~~ 159 (470)
+.......+. ..+...+..+. ...|.. . .... ...|++++|..+|++++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al--~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFAL--DKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHH--HHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHH--HHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 1100000000 00000000000 000100 0 0000 11466677777777777
Q ss_pred hcCccch--HHHHHHHHHHH-------------HcCChHHHHHHHHH------Hhhc-----CCCC-------hHHHHHH
Q 012143 160 QSDTRQA--VVWNTLGLILL-------------KSGRLQSSISVLSS------LLAV-----DPNN-------CDCIGNL 206 (470)
Q Consensus 160 ~~~p~~~--~~~~~l~~~~~-------------~~~~~~~A~~~~~~------a~~~-----~~~~-------~~~~~~l 206 (470)
. .|.+. ..|...+.... ..+++..|...+.. .++. .|.. ...|...
T Consensus 158 ~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 158 V-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp T-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred h-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 6 45432 22322222111 23445556555554 3332 2221 1233333
Q ss_pred HHHHHH----cCCH----HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHH------
Q 012143 207 GIAYFQ----SGDM----EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN------ 272 (470)
Q Consensus 207 a~~~~~----~g~~----~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 272 (470)
...... .++. ..++..|++++..+|.++..|..++..+... .......|+++
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~--------------~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS--------------SKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------HHHHHTTTCCHHHHHHH
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------------chhhhhccchhhhhhhh
Confidence 222211 1222 4677888888888888888888888877620 00001268876
Q ss_pred -HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHHhhhccCchHHhhh
Q 012143 273 -VAKECLLAALK-ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVAVSRIKDAERSQEPTEQLSW 349 (470)
Q Consensus 273 -~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 349 (470)
+|+.+|+++++ ..|++..+|..+|.++...|++++|...|+++++..|.++ ..|...+..... ......
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------~~~~~~ 374 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR--------AEGIKS 374 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH--------hcCHHH
Confidence 99999999997 8999999999999999999999999999999999999875 355555442221 111222
Q ss_pred hHHHHHHHhhcCCCCCCCcHHHHHHHHHH-HhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHH
Q 012143 350 AGNEMASILREGDPVQIEPPIAWAGFAAV-QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLA 426 (470)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 426 (470)
+...+...+. .++.....+...+.+ +...|++++|...|.+++. |.....|..++..+...|++++|..+|++
T Consensus 375 A~~~~~~Al~----~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 375 GRMIFKKARE----DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHT----CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHh----ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 2223333332 233445556655555 3468999999999999766 55567899999999999999999999999
Q ss_pred HHhcCCCcHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 427 ALKADPKAAH----IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 427 al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
++...|.++. +|...+......|+.+.+..+++++++.+|+
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9998776544 8888888889999999999999999999984
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=1.3e-27 Score=208.99 Aligned_cols=263 Identities=13% Similarity=0.067 Sum_probs=219.4
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHH
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS 119 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 119 (470)
+..++..|.. +...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++ .|.+
T Consensus 3 ~~~~~~~a~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~----------- 69 (272)
T 3u4t_A 3 DDVEFRYADF-LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA----------- 69 (272)
T ss_dssp --CHHHHHHH-HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-----------
T ss_pred HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-----------
Confidence 4467788888 88999999999999999999999999999999999999999999999988876 2211
Q ss_pred HHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 120 LVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
....+.++..+|.++...|++++|+.+|+++++.+|.+
T Consensus 70 ------------------------------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 107 (272)
T 3u4t_A 70 ------------------------------------------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107 (272)
T ss_dssp ------------------------------------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ------------------------------------------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Confidence 00125678999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH-HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
+.++..+|.++...|++++|+..|++++..+|.++.++..+| .++. .+++++|+.+|
T Consensus 108 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----------------------~~~~~~A~~~~ 165 (272)
T 3u4t_A 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY----------------------NKEYVKADSSF 165 (272)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH----------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH----------------------HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 6654 55999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHH
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGD---HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 355 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (470)
+++++.+|+++.++..+|.++...|+ +++|+..|+++++.....+....
T Consensus 166 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------------- 217 (272)
T 3u4t_A 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK---------------------------- 217 (272)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH----------------------------
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch----------------------------
Confidence 99999999999999999999999999 99999999999987643221000
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 356 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
.....++..+|.++...|++++|+.+|+++++++|+++
T Consensus 218 ------------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 218 ------------------------------------------DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 00112455667788889999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 012143 436 HIWANLANAYYLTG 449 (470)
Q Consensus 436 ~~~~~la~~~~~~g 449 (470)
.++..++.+....+
T Consensus 256 ~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 256 KAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHhhhhhcccc
Confidence 99999988876544
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-27 Score=205.07 Aligned_cols=244 Identities=14% Similarity=0.084 Sum_probs=217.1
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
.+..+..+|.. +...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..|+++++..|... ++..
T Consensus 4 ~a~~~~~~g~~-~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNK-FYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-----ADYK 76 (258)
T ss_dssp HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CCHH
T ss_pred HHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----cchH
Confidence 45678899999 999999999999999999999 9999999999999999999999999999999987642 1222
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
....++..++.++ ...|++++|+..+++++...|. +.++...|++++|+..+++++..+|.
T Consensus 77 ~~~~~~~~l~~~~-----------~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~ 137 (258)
T 3uq3_A 77 VISKSFARIGNAY-----------HKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPE 137 (258)
T ss_dssp HHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHH-----------HHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcc
Confidence 2234555566554 4566779999999999999887 56788889999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++. ..|++++|+.+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~ 196 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA---------------------KLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---------------------HhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999888887 799999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC------CCcccHHHHH
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE------PNCMSTRYAV 329 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~l 329 (470)
+++++.+|+++.++..+|.++...|++++|+.+|++++++. |++...+..+
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999 7766554433
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=9.9e-27 Score=203.40 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=212.4
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChh----HHHHH
Q 012143 6 DVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAH----AHFLL 81 (470)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l 81 (470)
+..-..|..+...|++++|+ ..++++++.+|++...++.+|.+ +...|++++|+..++++++ .|.++. ++..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAI-EVFNKLEAKKYNSPYIYNRRAVC-YYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHH-HHHHHHHHTTCCCSTTHHHHHHH-HHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCCcHHHHHHHHHH-HHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 34455788899999999999 99999999999999999999999 9999999999999999999 555544 48999
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc
Q 012143 82 GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS 161 (470)
Q Consensus 82 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 161 (470)
|.++...|++++|+..|+++++.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~--------------------------------------------------------- 103 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDR--------------------------------------------------------- 103 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---------------------------------------------------------
Confidence 99999999999999999888765
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|......+++++|+..|+++++.+|++..++..++
T Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 183 (272)
T 3u4t_A 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183 (272)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 45667788999999999999999999999999999999999999994444556999999999999999999999888888
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCC---HHHHHHHHHHHHhcC---CC-----CHHHHHHHHHHHHHcCChhHHHH
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASA---VNVAKECLLAALKAD---PK-----AAHIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~ 310 (470)
.++. ..|+ +++|+..|+++++.. |+ ...++..+|.++...|++++|+.
T Consensus 184 ~~~~---------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 184 RANA---------------------AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHH---------------------HHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHH---------------------HcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8877 4566 888999999998875 44 23688899999999999999999
Q ss_pred HHHHHHhcCCCcccHHHHHH
Q 012143 311 CLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 311 ~~~~a~~~~p~~~~~~~~l~ 330 (470)
+|+++++++|+++.++-.+.
T Consensus 243 ~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHhcCccHHHHHHHhh
Confidence 99999999999987766553
No 33
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=221.54 Aligned_cols=307 Identities=13% Similarity=0.078 Sum_probs=243.4
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccch
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIAR 114 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 114 (470)
....++..|.. +...|++++|+..|+++++..|.++ .++..+|.++...|++++|+.+|++++...+..
T Consensus 8 ~~~~l~~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------ 80 (406)
T 3sf4_A 8 SCLELALEGER-LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------ 80 (406)
T ss_dssp CHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHH-HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc------
Confidence 34456778888 8888899999999999888888874 578888888988899999988888888763221
Q ss_pred hhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 012143 115 PELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 194 (470)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 194 (470)
...|..+.++..+|.++...|++++|+.++++++.
T Consensus 81 ---------------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 81 ---------------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp ---------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11234467888999999999999999999999998
Q ss_pred cCCCC------hHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhCCC------ChHHHHHHHH
Q 012143 195 VDPNN------CDCIGNLGIAYFQSGD--------------------MEQSAKCFQDLILKDQN------HPAALINYAA 242 (470)
Q Consensus 195 ~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~~~p~------~~~~~~~l~~ 242 (470)
+.|.. ..++..+|.++...|+ +++|+..+++++.+.+. ...++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l-- 193 (406)
T 3sf4_A 116 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNL-- 193 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred HHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH--
Confidence 86643 4489999999999999 99999999999876322 22334444
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA------HIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
|.++...|++++|+.+++++++..|... .++..+|.++...|++++|+.++++++
T Consensus 194 -------------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 194 -------------------GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp -------------------HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4455589999999999999998866543 389999999999999999999999999
Q ss_pred hcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 012143 317 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 396 (470)
Q Consensus 317 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (470)
...|....... ...++..+|.++...|++++|+..+.+.+
T Consensus 255 ~~~~~~~~~~~----------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 255 LLARQLKDRAV----------------------------------------EAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHH----------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCcCchH----------------------------------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 87765432111 13478899999999999999999999866
Q ss_pred cchh--------hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHH
Q 012143 397 SKME--------ECAGAGESAFLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 397 ~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~ 458 (470)
...+ ..++..+|.++...|++++|+.+|++++++.+ ....++..+|.++...|+...+...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 5221 35688999999999999999999999998743 34778999999999999875444333
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=1.9e-26 Score=202.36 Aligned_cols=229 Identities=11% Similarity=0.075 Sum_probs=189.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 129 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (470)
.+..|++..|+..++++...+|++ .++...++.+|...|++++|+..++.. +| +.. ..+..++.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~--------~~~----~a~~~la~ 73 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SA--------PEL----QAVRMFAE 73 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SC--------HHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CC--------hhH----HHHHHHHH
Confidence 567899999999999887777877 468888999999999999999877552 11 111 12222222
Q ss_pred cccccCCCccccccCcccHHHHHHHHHHhhhc--CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHH
Q 012143 130 LPESSGDNSLDKELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207 (470)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 207 (470)
. +...++.++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..+|
T Consensus 74 ~-----------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~ 137 (291)
T 3mkr_A 74 Y-----------LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTV 137 (291)
T ss_dssp H-----------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHH
T ss_pred H-----------HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHH
Confidence 2 34567789999999999875 699999999999999999999999999998 89999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++..+|++++|+..|+++++.+|++.......+.+.. +...|++++|+.+|+++++..|+
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-------------------~~~~~~~~eA~~~~~~~l~~~p~ 198 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL-------------------AAGGEKLQDAYYIFQEMADKCSP 198 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------HHCTTHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-------------------HhCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988644333332222 12468999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 288 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
++.++..+|.++..+|++++|...|++++..+|+++.++.++
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999999999999999977554433
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.2e-27 Score=202.11 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=219.5
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC-------hhHHH
Q 012143 7 VAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN-------AHAHF 79 (470)
Q Consensus 7 ~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~ 79 (470)
.....|..+...|++.+|+ ..+.++++.+ ++...+..+|.+ +...|++++|+..++++++.+|++ +.++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~-~~~~~a~~~~-~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAI-EHYNKAWELH-KDITYLNNRAAA-EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHH-HHHHHHHHHS-CCTHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHH-HHHHHHHHhh-ccHHHHHHHHHH-HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3445788899999999999 9999999999 889999999999 999999999999999999999877 78999
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhh
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 159 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 159 (470)
.+|.++...|++++|+..|++++...|... . +...|++++|+..+++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~------------------------~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------I------------------------LTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------H------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhH-------H------------------------HHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999865421 1 345678899999999999
Q ss_pred hcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 160 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 160 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHH
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD------PKAAHIWANLANA 298 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~ 298 (470)
+|.++. ..|++++|+.+|++++++. |++..++..++.+
T Consensus 213 l~~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 213 KATAQI---------------------AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHH---------------------HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 988887 7999999999999999999 8888888887765
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.95 E-value=9.5e-26 Score=197.43 Aligned_cols=245 Identities=15% Similarity=0.095 Sum_probs=212.7
Q ss_pred ccCcccHHHHHHHHHHhhhc----CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH
Q 012143 142 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 217 (470)
....|++++|+..+++++.. .|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 45779999999999999987 46778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 218 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
+|+..|++++..+|.++.++..+|.++. ..|++++|+.+|+++++..|+++.....++.
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALY---------------------YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999988887 7999999999999999999999877766664
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 377 (470)
+ ...|++++|+..+++++...|++...+ .++.
T Consensus 154 ~-~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~ 185 (275)
T 1xnf_A 154 A-EQKLDEKQAKEVLKQHFEKSDKEQWGW-----------------------------------------------NIVE 185 (275)
T ss_dssp H-HHHHCHHHHHHHHHHHHHHSCCCSTHH-----------------------------------------------HHHH
T ss_pred H-HHhcCHHHHHHHHHHHHhcCCcchHHH-----------------------------------------------HHHH
Confidence 4 667999999999999999988754322 2445
Q ss_pred HHhccccHHHHHHHHHHHhcchh------hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 012143 378 VQKTHHEVAAAFETEENELSKME------ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 451 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 451 (470)
.+...++.++|+..+.+.+...+ ...++.+|.++...|++++|+.+|+++++.+|++... .+.++..+|++
T Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~ 262 (275)
T 1xnf_A 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLL 262 (275)
T ss_dssp HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHH
Confidence 56667777888888888766444 5778999999999999999999999999999987544 47788999999
Q ss_pred HHHHHHH
Q 012143 452 RSSGKCL 458 (470)
Q Consensus 452 ~~A~~~~ 458 (470)
++|++.|
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 9999887
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=1.3e-25 Score=196.88 Aligned_cols=253 Identities=11% Similarity=0.055 Sum_probs=218.2
Q ss_pred cCcccHHHHHHHHHHhhhcCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+-.|++..|+..+++....+|++ .+....++.+|..+|+++.|+..++. .+|....++..++..+...|++++|++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 45788999999999999988887 46888899999999999999998876 356667888999999999999999999
Q ss_pred HHHHHHhh--CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 222 CFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 222 ~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
.+++++.. +|+++.+++.+|.++. ..|++++|+..+++ |+++.++..+|.++
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~---------------------~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYF---------------------YDQNPDAALRTLHQ-----GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHH---------------------HTTCHHHHHHHHTT-----CCSHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 99999875 6999999999888887 79999999999998 89999999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHH
Q 012143 300 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 379 (470)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (470)
..+|++++|+..|+++++.+|++....... .|. .++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~-----------------------------------------a~~---~l~ 176 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQDEDATLTQLAT-----------------------------------------AWV---SLA 176 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------------------------------------HHH---HHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCcHHHHHHH-----------------------------------------HHH---HHH
Confidence 999999999999999999998854221111 122 223
Q ss_pred hccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH-HHH
Q 012143 380 KTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS-SGK 456 (470)
Q Consensus 380 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~ 456 (470)
...|++++|+..|++.+. |....+++.+|.++...|++++|+..|+++++.+|++++++.++|.++...|+..+ +..
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 456899999999998655 66667788999999999999999999999999999999999999999999999976 568
Q ss_pred HHHHHHHhhccC
Q 012143 457 CLEKVLMVYCSS 468 (470)
Q Consensus 457 ~~~~al~~~~~~ 468 (470)
++++++++.|..
T Consensus 257 ~~~~~~~~~P~~ 268 (291)
T 3mkr_A 257 YLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCC
Confidence 999999988764
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.95 E-value=5.3e-26 Score=212.49 Aligned_cols=385 Identities=11% Similarity=0.004 Sum_probs=252.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcCh---hhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKV---SSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
-+..+.+.|++.+|+ ..+.++.+. +++.+++.+|.+ +...|+. ++|...|+++++. ++.+++.+|.++..
T Consensus 9 la~~~~~~g~~~~A~-~~~~~aa~~--g~~~A~~~Lg~~-y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQ-QNYQQLAEL--GYSEAQVGLADI-QVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHH-HHHHHHHHC--CCHHHHHHHHHH-HHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 467788999999999 999999765 678899999999 8889988 9999999999865 78899999997777
Q ss_pred hC-----ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC
Q 012143 88 LG-----QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 162 (470)
Q Consensus 88 ~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 162 (470)
.| ++++|+.+|+++++..+. .+++.++.++...+.. ..+ .++...+.++..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~--------------~A~~~Lg~~y~~~~~~-------~~~-~~a~~~~~~a~~-- 137 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG--------------NTLIPLAMLYLQYPHS-------FPN-VNAQQQISQWQA-- 137 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS--------------SCHHHHHHHHHHCGGG-------CTT-CCHHHHHHHHHH--
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHhCCCC-------CCC-HHHHHHHHHHHH--
Confidence 66 789999999999884321 1223344433322221 011 345666666543
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHH----HHHHhhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISV----LSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~----~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~ 235 (470)
+.++.+++.+|.+|...+.++++... ++.+... ++.+++.+|.+|...| ++++|+..|+++....|....
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~ 214 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ 214 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH
Confidence 35588999999999999976665555 4444443 4459999999999999 999999999999999999998
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HHcCChhHHHHHH
Q 012143 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA-Y--YLTGDHRSSGKCL 312 (470)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~ 312 (470)
.++.+|.++.... ...+++++|+.+|+++. |.++.+++++|.+ + ...+++++|+.+|
T Consensus 215 ~~~~Lg~~y~~g~-----------------~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 215 RVDSVARVLGDAT-----------------LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHHTCGG-----------------GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHhCCC-----------------CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 8899998886310 12479999999999998 8999999999999 4 5789999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc----cccHHHH
Q 012143 313 EKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEVAAA 388 (470)
Q Consensus 313 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 388 (470)
+++.+.. ++.+.+.++....... .. ......+. ..+.... +.++.+++.+|.+|.. ..++++|
T Consensus 275 ~~Aa~~g--~~~A~~~Lg~~y~~G~-g~---~~d~~~A~----~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A 341 (452)
T 3e4b_A 275 DNGRAAD--QPRAELLLGKLYYEGK-WV---PADAKAAE----AHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKA 341 (452)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHCS-SS---CCCHHHHH----HHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHH
T ss_pred HHHHHCC--CHHHHHHHHHHHHcCC-CC---CCCHHHHH----HHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHH
Confidence 9998654 6667777666544211 00 11112222 2222222 4556777777777765 3477777
Q ss_pred HHHHHHHhcchhhhhHhhHHHHHHH----hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--cCChHHHHHHHHHHH
Q 012143 389 FETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL--TGDHRSSGKCLEKVL 462 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 462 (470)
+..|+++.......+.+.+|.+|.. ..++.+|..+|+++.+.. ++.+...++.+... .++..+|....++..
T Consensus 342 ~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 342 LDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7777777777777777777777764 346777777777777654 34555556655433 234555666555544
Q ss_pred Hh
Q 012143 463 MV 464 (470)
Q Consensus 463 ~~ 464 (470)
+.
T Consensus 420 ~~ 421 (452)
T 3e4b_A 420 AA 421 (452)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=3.2e-26 Score=212.76 Aligned_cols=280 Identities=17% Similarity=0.123 Sum_probs=223.9
Q ss_pred ChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHH
Q 012143 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 153 (470)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 153 (470)
....++.+|..+...|++++|+..|+++++..|.+.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------------- 82 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-------------------------------------------- 82 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh--------------------------------------------
Confidence 345566777777777777777777777776532210
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 154 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+..+++++
T Consensus 83 ---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 83 ---------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 001257788999999999999999999999887 46667889999999999999999999999998
Q ss_pred hh------CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC-----------------HHHHHHHHHHHHhc
Q 012143 228 LK------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-----------------VNVAKECLLAALKA 284 (470)
Q Consensus 228 ~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~~~~~ 284 (470)
.. .|....++..+|.++. ..|+ +++|+.++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 154 TLARQLGDRLSEGRALYNLGNVYH---------------------AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH---------------------HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHHHHHHHHH---------------------HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 87 3344445555555555 6888 99999999999876
Q ss_pred C------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHh
Q 012143 285 D------PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 358 (470)
Q Consensus 285 ~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (470)
. +....++..+|.++...|++++|+.++++++.+.|.......
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------- 261 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA------------------------------- 261 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH-------------------------------
Confidence 4 334568999999999999999999999999988766332111
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh--------hhhHhhHHHHHHHhccHHHHHHHHHHHHhc
Q 012143 359 REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFLDQASAVNVAKECLLAALKA 430 (470)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 430 (470)
...++..+|.++...|++++|+..+.+.+...+ ...+..+|.++...|++++|+.+++++++.
T Consensus 262 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 262 ---------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp ---------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 124788999999999999999999998666333 467889999999999999999999999987
Q ss_pred CCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 431 DPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 431 ~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
.+.. ..++..+|.+|...|++++|..+|++++++.++
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 5543 568999999999999999999999999998754
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.94 E-value=1.5e-24 Score=189.51 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=207.5
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+..|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578899999999999999999999999999998 7889999999999999 999999999999999875 78888
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHH
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSG 309 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~ 309 (470)
..+|.++. . .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+
T Consensus 78 ~~lg~~~~---------------------~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 78 HLLGNLYY---------------------SGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp HHHHHHHH---------------------HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHh---------------------CCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 88888887 5 899999999999999874 79999999999999 99999999
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc----cccH
Q 012143 310 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEV 385 (470)
Q Consensus 310 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 385 (470)
.+|+++++..+. .++..+|.++.. .+++
T Consensus 135 ~~~~~a~~~~~~------------------------------------------------~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 135 EYFTKACDLNDG------------------------------------------------DGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp HHHHHHHHTTCH------------------------------------------------HHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHhcCcH------------------------------------------------HHHHHHHHHHHcCCCCCCCH
Confidence 999999986522 356677777877 8999
Q ss_pred HHHHHHHHHHhcchhhhhHhhHHHHHHH----hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHH
Q 012143 386 AAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKC 457 (470)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 457 (470)
++|+..+++.+...+..+++.+|.++.. .+++++|+.+|+++++..| +.+++.+|.+|.. .+++++|+.+
T Consensus 167 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~ 244 (273)
T 1ouv_A 167 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIEN 244 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999999998888888899999999999 9999999999999999866 8899999999999 9999999999
Q ss_pred HHHHHHhhcc
Q 012143 458 LEKVLMVYCS 467 (470)
Q Consensus 458 ~~~al~~~~~ 467 (470)
|++++++-+.
T Consensus 245 ~~~a~~~~~~ 254 (273)
T 1ouv_A 245 FKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHcCCH
Confidence 9999998764
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=212.34 Aligned_cols=274 Identities=18% Similarity=0.195 Sum_probs=229.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCc----chhhhcccchhhhhcChhhHHHHHHHHHHh------CCCChhHH
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDAD----GDQSGLGTSSSSREEKVSSLKTGLVHVARK------MPKNAHAH 78 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~ 78 (470)
-..|..+...|++.+|+ ..++++++..|++. ..+..+|.+ +...|++++|...+++++.. .|..+.++
T Consensus 13 ~~~g~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGV-SFFEAAVQVGTEDLKTLSAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHHCCSCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHhcCcccHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34688899999999999 99999999999874 578899999 99999999999999999876 34557799
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCccc-----------
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE----------- 147 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 147 (470)
..+|.++...|++++|+.+++++++..|.... ......++..++.++ ...|+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~~-----------~~~g~~~~~~~~~~~~ 153 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELND------KVGEARALYNLGNVY-----------HAKGKSFGCPGPQDVG 153 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHH-----------HHHHHTCC-------C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc------ccchHHHHHHHHHHH-----------HHcCCcccccccchhh
Confidence 99999999999999999999999999876432 222344555555554 45566
Q ss_pred ---------HHHHHHHHHHhhhc------CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH------HHHHH
Q 012143 148 ---------LEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD------CIGNL 206 (470)
Q Consensus 148 ---------~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~l 206 (470)
+++|+..+++++.. .|....++..+|.++...|++++|+.++++++++.|.... ++..+
T Consensus 154 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 233 (406)
T 3sf4_A 154 EFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233 (406)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 89999999999876 4455678999999999999999999999999998665544 89999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 207 GIAYFQSGDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
|.++...|++++|+..+++++.+.|.. ..++..+ |.++...|++++|+.++++
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l---------------------a~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL---------------------GNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH---------------------HHHHHHhCcHHHHHHHHHH
Confidence 999999999999999999999887655 3334444 4555589999999999999
Q ss_pred HHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 281 ALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 281 ~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
++.+.+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 99885543 6789999999999999999999999999876553
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.94 E-value=1.7e-25 Score=210.44 Aligned_cols=224 Identities=18% Similarity=0.179 Sum_probs=196.6
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL-QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (470)
+.+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.+|...|++++|+..|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3468888999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-- 302 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-- 302 (470)
++++++|+ ..++..+|.++... ..+......|++++|+..|+++++++|+++.+|..+|.++...
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQL------------QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTC------------CCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHh------------ccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 68888888888721 0011222239999999999999999999999999999999999
Q ss_pred ------CChhHHHHHHHHHHhcCC---CcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHH
Q 012143 303 ------GDHRSSGKCLEKAAKLEP---NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 373 (470)
Q Consensus 303 ------g~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (470)
|++++|+.+|+++++++| +++.
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------------------------------------------- 259 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPD------------------------------------------------- 259 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH-------------------------------------------------
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHH-------------------------------------------------
Confidence 999999999999999988 4432
Q ss_pred HHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 012143 374 GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
+++.+|.++...|++++|+..|+++++++|+++.++..++.++..+|++++
T Consensus 260 -----------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 260 -----------------------------LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp -----------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 233444577778888999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 012143 454 SGKCLEK 460 (470)
Q Consensus 454 A~~~~~~ 460 (470)
|+..+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 9986644
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=8.5e-26 Score=203.73 Aligned_cols=282 Identities=16% Similarity=0.115 Sum_probs=210.3
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhh
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPEL 117 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 117 (470)
.++..|.. +...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++...+..
T Consensus 7 ~l~~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 76 (338)
T 3ro2_A 7 ELALEGER-LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 76 (338)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHH-HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------
Confidence 45677888 8889999999999999999988884 678889999999999999999999988763221
Q ss_pred HHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 012143 118 LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP 197 (470)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 197 (470)
...|..+.++..+|.++...|++++|+..++++++..|
T Consensus 77 ------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 77 ------------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp ------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 11234467888999999999999999999999998765
Q ss_pred CC------hHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhCCC------ChHHHHHHHHHHH
Q 012143 198 NN------CDCIGNLGIAYFQSGD--------------------MEQSAKCFQDLILKDQN------HPAALINYAALLL 245 (470)
Q Consensus 198 ~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~ 245 (470)
.. ..++..+|.++...|+ +++|+..+++++...+. ...++..+
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l----- 189 (338)
T 3ro2_A 115 ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL----- 189 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----
T ss_pred HhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Confidence 44 3389999999999999 99999999988865321 12233333
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
|.++...|++++|+.+++++++..|.. ..++..+|.++...|++++|+.++++++...
T Consensus 190 ----------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 190 ----------------GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp ----------------HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 444457888899998888888775442 3378888888888888888888888888765
Q ss_pred CCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch
Q 012143 320 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM 399 (470)
Q Consensus 320 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 399 (470)
|.......
T Consensus 254 ~~~~~~~~------------------------------------------------------------------------ 261 (338)
T 3ro2_A 254 RQLKDRAV------------------------------------------------------------------------ 261 (338)
T ss_dssp HHTTCHHH------------------------------------------------------------------------
T ss_pred HhhcchhH------------------------------------------------------------------------
Confidence 54321110
Q ss_pred hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 400 EECAGAGESAFLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
....+..+|.++...|++++|+.+++++++..|.. ..++..+|.++...|++++|..+|++++++.++.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 01234445556667777777777777777664432 5588899999999999999999999999887654
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=5e-25 Score=189.06 Aligned_cols=213 Identities=15% Similarity=0.166 Sum_probs=172.9
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
.+..++.+|.. +...|++++|...|+++++.+|.++.++..+|.++...|++++|+..|+++++.
T Consensus 22 ~~~~~~~~a~~-~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------- 86 (243)
T 2q7f_A 22 ASMTGGQQMGR-GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL-------------- 86 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHH-HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------
Confidence 45578888998 999999999999999999999999999999999999999988888888887764
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
+|.++.++..+|.++...|++++|+..++++++..|.
T Consensus 87 -------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 123 (243)
T 2q7f_A 87 -------------------------------------------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123 (243)
T ss_dssp -------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred -------------------------------------------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 4556778888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
++.++..+|.++...|++++|+..+++++...|.++..+..++.++. ..|++++|+..+
T Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~ 182 (243)
T 2q7f_A 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA---------------------NEGMLDEALSQF 182 (243)
T ss_dssp SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------HcCCHHHHHHHH
Confidence 99999999999999999999999999999999999888888887777 689999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
++++...|+++.++..+|.++...|++++|+.+|+++++.+|++..++..++
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887776554
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.94 E-value=9.1e-25 Score=178.78 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=157.2
Q ss_pred CChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHH
Q 012143 73 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 152 (470)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 152 (470)
+++.+|+.+|.+|...|++++|+..|++++++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~------------------------------------------------ 34 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------------------------------------------------ 34 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------------------------
Confidence 45677777888888777777777777777664
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 153 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...++++.|+..+.+++..+|.
T Consensus 35 ---------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 105 (184)
T 3vtx_A 35 ---------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV 105 (184)
T ss_dssp ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
+..++..+|.++. ..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|
T Consensus 106 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 106 YADAYYKLGLVYD---------------------SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp CHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHH---------------------HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999888887 7999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcc
Q 012143 313 EKAAKLEPNCM 323 (470)
Q Consensus 313 ~~a~~~~p~~~ 323 (470)
+++++++|+++
T Consensus 165 ~~al~~~p~~a 175 (184)
T 3vtx_A 165 KKALEKEEKKA 175 (184)
T ss_dssp HHHHHTTHHHH
T ss_pred HHHHhCCccCH
Confidence 99999999853
No 46
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=5.2e-24 Score=204.23 Aligned_cols=365 Identities=10% Similarity=0.010 Sum_probs=267.8
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCcccccc
Q 012143 64 LVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKEL 143 (470)
Q Consensus 64 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (470)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+. .+|...+.. ..
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~------------~~w~~~~~~-----------~~ 57 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSG------------RFWKLYIEA-----------EI 57 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCH------------HHHHHHHHH-----------HH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCH------------HHHHHHHHH-----------HH
Confidence 678889999999999999985 789999999999999999877642 223333332 23
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHH-HHHHcCChHHHHH----HHHHHhhc---CCCChHHHHHHHHHHHH---
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGL-ILLKSGRLQSSIS----VLSSLLAV---DPNNCDCIGNLGIAYFQ--- 212 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~~~~~A~~----~~~~a~~~---~~~~~~~~~~la~~~~~--- 212 (470)
+.|++++|...|++++...| ++..|..++. +....|++++|.+ .|++++.. +|.+..+|...+.....
T Consensus 58 ~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 58 KAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred hcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 55778999999999999999 5778888885 4456788888776 78887754 56778899888887765
Q ss_pred ------cCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHh--------------------------------hhcccc
Q 012143 213 ------SGDMEQSAKCFQDLILKDQNHP--AALINYAALLLC--------------------------------KYGSVL 252 (470)
Q Consensus 213 ------~g~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~~~~--------------------------------~~~~~~ 252 (470)
.|++++|...|++++. .|.+. ..|......... ......
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred cccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7899999999999999 57653 222222221000 000000
Q ss_pred c--c----------cccchhhhhHHHh----cCCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCh
Q 012143 253 A--G----------AGANTGEGACLDQ----ASAV----NVAKECLLAALKADPKAAHIWANLANAYYL-------TGDH 305 (470)
Q Consensus 253 ~--~----------~~~~~~~~~~~~~----~~~~----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-------~g~~ 305 (470)
. . ...+......... .++. .+++..|++++...|.++.+|..+|..+.. .|++
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch
Confidence 0 0 0111111111111 1232 478899999999999999999999999987 7998
Q ss_pred h-------HHHHHHHHHHh-cCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcH-HHHHHHH
Q 012143 306 R-------SSGKCLEKAAK-LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP-IAWAGFA 376 (470)
Q Consensus 306 ~-------~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 376 (470)
+ +|+..|+++++ ..|++...+..++...... .. ...+...+...+. ..|.++ .+|..++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~-----g~---~~~A~~~~~~al~----~~p~~~~~~~~~~~ 363 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR-----MK---YEKVHSIYNRLLA----IEDIDPTLVYIQYM 363 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT-----TC---HHHHHHHHHHHHH----SSSSCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc-----CC---HHHHHHHHHHHhC----ccccCchHHHHHHH
Confidence 7 99999999997 7999888888776543321 11 2222233333333 244443 6999999
Q ss_pred HHHhccccHHHHHHHHHHHhcchhh--hhHhhHHHH-HHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 012143 377 AVQKTHHEVAAAFETEENELSKMEE--CAGAGESAF-LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
.++...|++++|...|.+++...+. ..+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++
T Consensus 364 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 364 KFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 9999999999999999998875443 334444433 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 012143 454 SGKCLEKVLMVYC 466 (470)
Q Consensus 454 A~~~~~~al~~~~ 466 (470)
|...|+++++..+
T Consensus 444 Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 444 TRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999998753
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=1.9e-25 Score=207.57 Aligned_cols=283 Identities=14% Similarity=0.083 Sum_probs=234.3
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccch
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIAR 114 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 114 (470)
....++.+|.. +...|++++|+..|+++++..|+++ .++..+|.++...|++++|+.+|+++++....
T Consensus 47 ~~~~l~~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------- 118 (411)
T 4a1s_A 47 MCLELALEGER-LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS------- 118 (411)
T ss_dssp HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------
Confidence 44567789999 9999999999999999999999987 58999999999999999999999999886311
Q ss_pred hhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 012143 115 PELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 194 (470)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 194 (470)
....|....++..+|.++...|++++|+.+|++++.
T Consensus 119 --------------------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 119 --------------------------------------------MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp --------------------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------------------------ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011345567889999999999999999999999998
Q ss_pred c------CCCChHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCCC------ChHHHHHHHHHHH
Q 012143 195 V------DPNNCDCIGNLGIAYFQSGD-----------------MEQSAKCFQDLILKDQN------HPAALINYAALLL 245 (470)
Q Consensus 195 ~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~ 245 (470)
. .|....++..+|.++...|+ +++|+..+++++.+.+. ...++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l----- 229 (411)
T 4a1s_A 155 LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNL----- 229 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Confidence 8 45567799999999999999 99999999998876432 22234444
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA------HIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
|.++...|++++|+.++++++++.|... .++..+|.++...|++++|+.+|++++...
T Consensus 230 ----------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 230 ----------------GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp ----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4555589999999999999999876533 389999999999999999999999999887
Q ss_pred CCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch
Q 012143 320 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM 399 (470)
Q Consensus 320 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 399 (470)
|....... ...++..+|.++...|++++|+..+.+.+...
T Consensus 294 ~~~~~~~~----------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 294 VELGEREV----------------------------------------EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHTTCHHH----------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHH----------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 65432111 13578899999999999999999999866532
Q ss_pred h--------hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 400 E--------ECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 400 ~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
+ ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 2 2478899999999999999999999999987654
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=6.7e-25 Score=188.25 Aligned_cols=210 Identities=10% Similarity=0.087 Sum_probs=173.7
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 112 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKD 112 (243)
T ss_dssp ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 301 (470)
.++++++..|.++..+..++.++. ..|++++|+..++++++..|+++.++..+|.++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 113 MFEKALRAGMENGDLFYMLGTVLV---------------------KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHH---------------------HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 999999999999888888887776 68999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc
Q 012143 302 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 381 (470)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (470)
.|++++|+..+++++...|++...
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~-------------------------------------------------------- 195 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADA-------------------------------------------------------- 195 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHH--------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCcccHHH--------------------------------------------------------
Confidence 999999999999999888875432
Q ss_pred cccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 012143 382 HHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 382 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 450 (470)
+..+|.++...|++++|+.+|+++++.+|+++.++..++.+....|+
T Consensus 196 ----------------------~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 196 ----------------------FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp ----------------------HHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred ----------------------HHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 23344477778888999999999999999999999998887665543
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=8.5e-25 Score=191.39 Aligned_cols=198 Identities=19% Similarity=0.204 Sum_probs=115.8
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhC----CCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchh
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKM----PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARP 115 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 115 (470)
......++.. ....|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|
T Consensus 5 ~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------- 74 (275)
T 1xnf_A 5 WRKSEVLAVP-LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--------- 74 (275)
T ss_dssp --CGGGSCCC-CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------
T ss_pred cccCcceeec-cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---------
Confidence 3445566777 778899999999999999873 55678899999999999999999999998887643
Q ss_pred hhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 012143 116 ELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 195 (470)
.++.++..+|.++...|++++|+.+|+++++.
T Consensus 75 ------------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 75 ------------------------------------------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444445555555555555555555555555
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
+|.++.++..+|.++...|++++|+..|++++..+|++.......+... ..|++++|+
T Consensus 107 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~----------------------~~~~~~~A~ 164 (275)
T 1xnf_A 107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE----------------------QKLDEKQAK 164 (275)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------HHHCHHHHH
T ss_pred CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHH----------------------HhcCHHHHH
Confidence 5555555555555555555555555555555555554443332222111 234455555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 276 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
..+.+++...|.+...+. ++.++...++.++|+..+++++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 165 EVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp HHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc
Confidence 555555554444433322 444444444445555555544443
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=2.1e-24 Score=176.68 Aligned_cols=141 Identities=18% Similarity=0.305 Sum_probs=134.1
Q ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+++.++..++.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
+. ..++++.|+..+.+++...|+++.++..+|.++..+|++++|+..|+++++.+|+++
T Consensus 83 ~~---------------------~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 83 NF---------------------MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HH---------------------HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 87 699999999999999999999999999999999999999999999999999999865
Q ss_pred cH
Q 012143 324 ST 325 (470)
Q Consensus 324 ~~ 325 (470)
.+
T Consensus 142 ~~ 143 (184)
T 3vtx_A 142 RA 143 (184)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=3.1e-24 Score=185.26 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=139.7
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++. ..|.+..++..+|.++...|++++|+..+
T Consensus 85 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 85 MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3345555555555555677788889999999999999999999999999 78888899999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 224 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 224 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
++++...|.+..++..++.++. ..|++++|+.+++++++..|.+...+..++.++...|
T Consensus 165 ~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 165 EKSLRLNRNQPSVALEMADLLY---------------------KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223 (252)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc
Confidence 9999999999988888888777 6899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCcccHHH
Q 012143 304 DHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
++++|..+++++++..|+++....
T Consensus 224 ~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 224 DRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp CHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999998776543
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=5.5e-24 Score=183.68 Aligned_cols=209 Identities=16% Similarity=0.179 Sum_probs=178.2
Q ss_pred hcCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 160 QSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 160 ~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
..+|.+ +.+++.+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.+..++.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 346665 8899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
.++.++. ..|++++|+.++++++. ..|.++.++..+|.++...|++++|+.++++++
T Consensus 110 ~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 110 NYGGFLY---------------------EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHHHH---------------------HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888877 79999999999999999 888899999999999999999999999999999
Q ss_pred hcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 012143 317 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 396 (470)
Q Consensus 317 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (470)
...|.+.. ++..+
T Consensus 169 ~~~~~~~~----------------------------------------------~~~~l--------------------- 181 (252)
T 2ho1_A 169 RLNRNQPS----------------------------------------------VALEM--------------------- 181 (252)
T ss_dssp HHCSCCHH----------------------------------------------HHHHH---------------------
T ss_pred hcCcccHH----------------------------------------------HHHHH---------------------
Confidence 99887532 22333
Q ss_pred cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 397 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|.++...|++++|+.+++++++..|+++.++..++.++...|++++|..++++++++.|.
T Consensus 182 -----------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 182 -----------ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 335556666677777777777777777777777777777777777777777777776654
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=4e-25 Score=206.53 Aligned_cols=354 Identities=12% Similarity=0.034 Sum_probs=254.4
Q ss_pred hhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh---hHHHHHHHHHHHHHhhhhcccchhhhHHH
Q 012143 44 SGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP---LKAVSSYEKAEEILLRCEADIARPELLSL 120 (470)
Q Consensus 44 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 120 (470)
..+|.. ....|++++|...|+++.+. .++.+++.+|.+|...|++ ++|+.+|+++++.+|
T Consensus 7 ~~la~~-~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~-------------- 69 (452)
T 3e4b_A 7 QRLANE-ALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSP-------------- 69 (452)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-----------------------------------------
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCH--------------
Confidence 346777 88999999999999999765 6789999999999999999 999999999997522
Q ss_pred HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-CCCC
Q 012143 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN 199 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~ 199 (470)
.+++.++.++...+.. ..+++++|+.+|++++.. .++.+++.+|.+|...+...++...++..... .+.+
T Consensus 70 -~A~~~Lg~~~~~~~~~------~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 70 -RAQARLGRLLAAKPGA------TEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY 140 (452)
T ss_dssp --CHHHHHHHHHTC--C------CHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHhCCCC------CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC
Confidence 2233444432222211 346889999999999984 55679999999999887755544444433332 2456
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHH----HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC---CHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKC----FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVN 272 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 272 (470)
+.+++.+|.+|...+.++++... ++.+...+ +.+++.+|.++. ..| +++
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~---------------------~~g~~~~~~ 196 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQ---------------------KKQQPEQQA 196 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHH---------------------HcCCcccHH
Confidence 88999999999999965555544 44444444 448888888887 577 899
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhh
Q 012143 273 VAKECLLAALKADPKAAHIWANLANAYYLT----GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLS 348 (470)
Q Consensus 273 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 348 (470)
+|+.+|+++.+..|.....++++|.+|... +++++|+.+|+++. |+++.+++.++...+.... .....
T Consensus 197 ~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~-----~~d~~ 268 (452)
T 3e4b_A 197 ELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE-----LGDVE 268 (452)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG-----GCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC-----CCCHH
Confidence 999999999999999999999999999766 79999999999998 8999999998876432111 11233
Q ss_pred hhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccc-----cHHHHHHHHHHHhcchhhhhHhhHHHHHHH----hccHHH
Q 012143 349 WAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH-----EVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNV 419 (470)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 419 (470)
.+...+.+.... .++.+++.+|.+|. .| ++++|+..|.++. +....+++.+|.+|.. ..++++
T Consensus 269 ~A~~~~~~Aa~~------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 269 QMMKYLDNGRAA------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHHHHHHT------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHHHHHHC------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 344444444433 35789999999998 55 9999999999999 8888999999999887 448999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 012143 420 AKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 420 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 465 (470)
|+.+|+++.+ +.++.+.++||.+|.. ..++.+|..+|+++.+.-
T Consensus 341 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 341 ALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 9999999987 4678899999999975 569999999999998764
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=2.5e-23 Score=181.78 Aligned_cols=234 Identities=13% Similarity=0.080 Sum_probs=144.0
Q ss_pred CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHH
Q 012143 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 71 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
+|.++.+++.+|.++...|++++|+.+|+++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------------------------------------- 34 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD----------------------------------------------- 34 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------------------------------------------
Confidence 577888888888888888888888888887765
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----cCCHHHHHHH
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKC 222 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 222 (470)
|+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++..+|.++.. .+++++|+..
T Consensus 35 ------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 100 (273)
T 1ouv_A 35 ------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQY 100 (273)
T ss_dssp ------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 1223455555555555 566666666666655553 45555666666665 6666666666
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
|++++.. +++.++..+|.++. . .+++++|+.+|+++++.. ++.++..+|.+
T Consensus 101 ~~~a~~~--~~~~a~~~lg~~~~---------------------~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 101 YSKACDL--KYAEGCASLGGIYH---------------------DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHH---------------------HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHc--CCccHHHHHHHHHH---------------------cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 6665554 24555555555544 3 555666666666665543 35555666666
Q ss_pred HHH----cCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHH
Q 012143 299 YYL----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 374 (470)
Q Consensus 299 ~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (470)
+.. .+++++|+.+|+++++..+ +.++..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------------------------~~a~~~ 187 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKD------------------------------------------------SPGCFN 187 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC------------------------------------------------HHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCC------------------------------------------------HHHHHH
Confidence 665 5666666666666554421 123444
Q ss_pred HHHHHhc----cccHHHHHHHHHHHhcchhhhhHhhHHHHHHH----hccHHHHHHHHHHHHhcCCCcHHHH
Q 012143 375 FAAVQKT----HHEVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIW 438 (470)
Q Consensus 375 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 438 (470)
+|.++.. .+++++|+..+++.+...+..+++.+|.++.. .+++++|+.+|+++++..|+++..+
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555 56666666666665555555566677777777 7888888888888888887654443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=1.7e-23 Score=177.08 Aligned_cols=208 Identities=11% Similarity=0.016 Sum_probs=170.3
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
..|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
+.++. .. |++++|+.+++++++ ..|.+..++..+|.++...|++++|+.+++++++
T Consensus 83 ~~~~~---------------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 83 GWFLC---------------------GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHH---------------------TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH---------------------HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88877 68 999999999999999 6677789999999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc
Q 012143 318 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 397 (470)
Q Consensus 318 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 397 (470)
..|++.. ++..+|.
T Consensus 142 ~~~~~~~----------------------------------------------~~~~la~-------------------- 155 (225)
T 2vq2_A 142 AQPQFPP----------------------------------------------AFKELAR-------------------- 155 (225)
T ss_dssp HSTTCHH----------------------------------------------HHHHHHH--------------------
T ss_pred hCCCCch----------------------------------------------HHHHHHH--------------------
Confidence 9887542 3333344
Q ss_pred chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 398 KMEECAGAGESAFLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 398 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
++...|++++|+..++++++..| +++..+..++.++...|+.++|..+++.+.+..|.
T Consensus 156 ------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 156 ------------TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp ------------HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ------------HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 44455555666666666666666 56666666666666666666666666665555543
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=8.3e-24 Score=179.07 Aligned_cols=213 Identities=14% Similarity=0.049 Sum_probs=156.6
Q ss_pred CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHH
Q 012143 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 71 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
.|.++.+++.+|.++...|++++|+..|+++++..|... .++..++.++ ...|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~-----------~~~~~~~~ 60 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE------------LAWLVRAEIY-----------QYLKVNDK 60 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------------HHHHHHHHHH-----------HHTTCHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch------------HHHHHHHHHH-----------HHcCChHH
Confidence 344455555555555555555555555555555443321 1112222221 23344455
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHc-CChHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKS-GRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
|+..+++++..+|.++.++..+|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..+++++
T Consensus 61 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 61 AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555677778888899999999 999999999999988 566667888999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChh
Q 012143 228 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~ 306 (470)
+..|.++.++..++.++. ..|++++|+.+++++++..| .++..+..++.++...|+++
T Consensus 141 ~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKM---------------------LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHSTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HhCCCCchHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 999988888888887776 68899999999999999988 88888888888889999999
Q ss_pred HHHHHHHHHHhcCCCcccHHH
Q 012143 307 SSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~ 327 (470)
+|..+++.+....|+++....
T Consensus 200 ~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 200 AAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 999999888888888776544
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=3e-25 Score=200.11 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=224.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCc----chhhhcccchhhhhcChhhHHHHHHHHHHh------CCCChhHH
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDAD----GDQSGLGTSSSSREEKVSSLKTGLVHVARK------MPKNAHAH 78 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~ 78 (470)
-..|..+...|++++|+ ..++++++..|++. ..+..+|.+ +...|++++|...+++++.. .|..+.++
T Consensus 9 ~~~g~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGV-SFFEAAVQVGTEDLKTLSAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHHCCSCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHhhCcccHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34688899999999999 99999999999984 578899999 99999999999999999876 45567799
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCccc-----------
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE----------- 147 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 147 (470)
..+|.++...|++++|+..++++++..+.... ......++..++.++ ...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~ 149 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELND------KVGEARALYNLGNVY-----------HAKGKSFGCPGPQDTG 149 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHH-----------HHHHHTSSSSSCC---
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC------chHHHHHHHHHHHHH-----------HHcCcccccchhhhhh
Confidence 99999999999999999999999998766422 122234445555544 34555
Q ss_pred ---------HHHHHHHHHHhhhc------CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh------HHHHHH
Q 012143 148 ---------LEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNL 206 (470)
Q Consensus 148 ---------~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l 206 (470)
+++|+..+++++.. .|....++..+|.++...|++++|+.+++++++..|... .++..+
T Consensus 150 ~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 229 (338)
T 3ro2_A 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229 (338)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 89999999998875 344566899999999999999999999999998765433 389999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 207 GIAYFQSGDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
|.++...|++++|+..+++++...|.. ..++..+ |.++...|++++|+.++++
T Consensus 230 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l---------------------a~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL---------------------GNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH---------------------HHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999999886654 3333444 4555589999999999999
Q ss_pred HHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 281 ALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 281 ~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
++...+.. ..++..+|.++...|++++|..++++++.+.+..
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99876542 5588999999999999999999999999987753
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=1.4e-24 Score=204.08 Aligned_cols=219 Identities=15% Similarity=0.065 Sum_probs=196.4
Q ss_pred hhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 52 SREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP-LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 52 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
...+.++++...+.+.....|.++.+++.+|.++...|++ ++|+..|+++++.+|.. ..++..+|.+
T Consensus 79 ~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------------~~a~~~lg~~ 146 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------------VEAWNQLGEV 146 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------------HHHHHHHHHH
Confidence 3455678888899988888999999999999999999999 99999999999987663 2344455554
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc---------CChHHHHHHHHHHhhcCCCChH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
+ ...|++++|+..|+++++.+|+ +.++..+|.++... |++++|+..|+++++++|+++.
T Consensus 147 ~-----------~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 147 Y-----------WKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp H-----------HHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred H-----------HHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 3 4566779999999999999999 69999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC
Q 012143 202 CIGNLGIAYFQS--------GDMEQSAKCFQDLILKDQ---NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 270 (470)
Q Consensus 202 ~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (470)
++..+|.++... |++++|+..|+++++++| .++.++..+|.++. ..|+
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~---------------------~~g~ 273 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK---------------------YEES 273 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH---------------------HTTC
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH---------------------HcCC
Confidence 999999999999 999999999999999999 99999999998888 7999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 271 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 271 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+++|+..|+++++++|+++.++..++.++...|++++|+..+.+.
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999877543
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=4e-23 Score=183.48 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=179.1
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHhh-cCCCChHHHHHHHHHHHHc
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLK-------SGRL-------QSSISVLSSLLA-VDPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~ 213 (470)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 292 (470)
|++++|+..|+++++..|.++. +|..++.++. +.|++++|+..|+++++..|....+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR---------------------RAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH---------------------HHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999886 8888888776 68999999999999999999998888
Q ss_pred HHHHHHHHH-cCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHH
Q 012143 293 ANLANAYYL-TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 371 (470)
Q Consensus 293 ~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (470)
...+.+... .|++++|+..|+++++.+|+++ .+
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------------------~~ 205 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIP----------------------------------------------EY 205 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH----------------------------------------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------------------------------------HH
Confidence 877766544 7999999999999999998854 35
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhcc------hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 372 WAGFAAVQKTHHEVAAAFETEENELSK------MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
|..++.++...|++++|...|.+++.. .....|..++..+...|++++|...++++++..|++
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 556666666666666666666665441 122345555666666666666666666666666654
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=5.7e-23 Score=174.32 Aligned_cols=213 Identities=15% Similarity=0.086 Sum_probs=174.8
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678999999999999999999999999999999 88999999999999999999999999999999999999999998
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHH
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-------HIWANLANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~ 314 (470)
.++. ..|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|++
T Consensus 84 ~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 84 AAYR---------------------DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH---------------------HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 8887 79999999999999999999998 6699999999999999999999999
Q ss_pred HHhcCCC--cccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHH
Q 012143 315 AAKLEPN--CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 392 (470)
Q Consensus 315 a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 392 (470)
+++.+|+ +..++..++.... ..|+. .+
T Consensus 143 al~~~p~~~~~~~~~~l~~~~~----------------------------------------------~~~~~-----~~ 171 (228)
T 4i17_A 143 ATDVTSKKWKTDALYSLGVLFY----------------------------------------------NNGAD-----VL 171 (228)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHH----------------------------------------------HHHHH-----HH
T ss_pred HHhcCCCcccHHHHHHHHHHHH----------------------------------------------HHHHH-----HH
Confidence 9999998 7666665554332 22221 00
Q ss_pred HHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012143 393 ENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 447 (470)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 447 (470)
.+.....+.......+......+.+++|+.+|+++++++|+++.+...++.+...
T Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 172 RKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 1111100001111122344556779999999999999999999999998887543
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=3.8e-23 Score=189.96 Aligned_cols=245 Identities=9% Similarity=-0.039 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc---CCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAV---DPN---NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
.++.+|.++...|++++|+.+|++++.+ .++ .+.++..+|.++...|++++|+..+++++.+.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3455999999999999999999999987 232 4578999999999999999999999999998665543222222
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
.++. .+|.++...|++++|+.+|++++++.|.. ..++.++|.+|..+|++++|+.+|+++
T Consensus 185 ~~~~--------------~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 185 QCHS--------------LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2322 24566668999999999999999885543 358999999999999999999999999
Q ss_pred HhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHH
Q 012143 316 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE 395 (470)
Q Consensus 316 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 395 (470)
+.+.+.... .+..+.++..+|.++...|++++|+..+.++
T Consensus 251 l~~~~~~~~----------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 251 IAVFEESNI----------------------------------------LPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHTTC----------------------------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhcc----------------------------------------chhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 986332110 0122457889999999999999999999996
Q ss_pred hcch-------hhhhHhhHHHHHHHhcc---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 396 LSKM-------EECAGAGESAFLDQASA---VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 396 ~~~~-------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+.-. ....+..+|.++...|+ +++|+..+++. ...|....++..+|.+|...|++++|..+|++++++.
T Consensus 291 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 6522 12235678999999998 88899988887 4445567889999999999999999999999999987
Q ss_pred cc
Q 012143 466 CS 467 (470)
Q Consensus 466 ~~ 467 (470)
.+
T Consensus 370 ~~ 371 (383)
T 3ulq_A 370 QL 371 (383)
T ss_dssp TS
T ss_pred HH
Confidence 54
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=7.2e-24 Score=206.56 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=160.1
Q ss_pred hCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHH
Q 012143 70 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 149 (470)
Q Consensus 70 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
..|++++++..+|.++..+|++++|+..|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------------------------------------------- 38 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------------------------------------------- 38 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------------------------
Confidence 46888899999999999999888888888888765
Q ss_pred HHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 150 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
+|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|++.|++++++
T Consensus 39 ------------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 39 ------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106 (723)
T ss_dssp ------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 309 (470)
+|++..++.++|.++. ..|++++|+..|+++++++|+++.++.++|.++..+|++++|.
T Consensus 107 ~P~~~~a~~~Lg~~~~---------------------~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 107 NPAFADAHSNLASIHK---------------------DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp CTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred CCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999998887 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 012143 310 KCLEKAAKLEPN 321 (470)
Q Consensus 310 ~~~~~a~~~~p~ 321 (470)
+.+++++++.|+
T Consensus 166 ~~~~kal~l~~~ 177 (723)
T 4gyw_A 166 ERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhChh
Confidence 999999987654
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=5.3e-23 Score=174.49 Aligned_cols=190 Identities=15% Similarity=0.103 Sum_probs=167.9
Q ss_pred CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHH
Q 012143 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 71 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
.|.++.+++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------------------------------------- 38 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------------------------------------------- 38 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--------------------------------------------
Confidence 356778899999999999999999999988887632
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
|.+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+
T Consensus 39 ------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 39 ------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp ------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 14557888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCh---
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDH--- 305 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~--- 305 (470)
|+++..+..++.++.. +|.++...|++++|+..|+++++.+|+ ++.++..+|.++...|+.
T Consensus 107 p~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 172 (228)
T 4i17_A 107 PGNATIEKLYAIYYLK--------------EGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLR 172 (228)
T ss_dssp TTCHHHHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH--------------HhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999776666655543 566777999999999999999999999 999999999999999998
Q ss_pred ------------------------hHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 306 ------------------------RSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 306 ------------------------~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
++|+.+|+++++++|++..+...++
T Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 173 KATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 9999999999999999987666543
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=7.7e-23 Score=181.67 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=134.0
Q ss_pred cHHHHHHHHHHhhhcCccchH-HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH-cCCHHHHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ-SGDMEQSAKCFQ 224 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~ 224 (470)
++++|+..|+++++..|.++. +|..+|.++.+.|++++|+..|+++++..|.+..++...+.+... .|++++|+..|+
T Consensus 114 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~ 193 (308)
T 2ond_A 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE 193 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555555555677776 899999999999999999999999999999988888877766543 799999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHH
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA---DPK-AAHIWANLANAYY 300 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~la~~~~ 300 (470)
++++.+|+++..|..++.++. ..|++++|+.+|++++.. .|+ ...+|..++..+.
T Consensus 194 ~al~~~p~~~~~~~~~~~~~~---------------------~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 194 LGLKKYGDIPEYVLAYIDYLS---------------------HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH---------------------TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999988888876 689999999999999995 553 7889999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCccc
Q 012143 301 LTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
..|++++|...++++++..|++..
T Consensus 253 ~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HcCCHHHHHHHHHHHHHHcccccc
Confidence 999999999999999999998654
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=2.2e-23 Score=203.21 Aligned_cols=141 Identities=21% Similarity=0.257 Sum_probs=90.2
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
.|++++++.++|.++..+|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..++.++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.++. ..|++++|++.|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+
T Consensus 85 ~~l~---------------------~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 85 NTLK---------------------EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555 4666666666666666666666666666666666666666666666666666555
Q ss_pred cc
Q 012143 322 CM 323 (470)
Q Consensus 322 ~~ 323 (470)
+.
T Consensus 144 ~~ 145 (723)
T 4gyw_A 144 FP 145 (723)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.91 E-value=2.5e-22 Score=184.53 Aligned_cols=308 Identities=10% Similarity=0.072 Sum_probs=223.2
Q ss_pred hhhhcChhhHHHHHHHHHHhCC---CChhHH--HHH--HHHHHHhCChhHHH-----------HHHHHHHHHHhhhhccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMP---KNAHAH--FLL--GLMYQRLGQPLKAV-----------SSYEKAEEILLRCEADI 112 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p---~~~~~~--~~l--~~~~~~~g~~~~A~-----------~~~~~al~~~~~~~~~~ 112 (470)
....+++++|...++++.+.-+ .+...+ +.+ .......+++..+. ..++++-. .|.+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~~~--- 97 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQARL--- 97 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTHHH---
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCCCc---
Confidence 6678899999999988765432 344443 222 22333345555555 55655433 22211
Q ss_pred chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc------CccchHHHHHHHHHHHHcCChHHHH
Q 012143 113 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSI 186 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~A~ 186 (470)
.... ....++..|.. +...|++++|+..|++++.. .+..+.++..+|.++...|++++|+
T Consensus 98 --~~~l-~~~~~~~~g~~-----------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~ 163 (383)
T 3ulq_A 98 --TGLL-EYYFNFFRGMY-----------ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM 163 (383)
T ss_dssp --HHHH-HHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --hhHH-HHHHHHHHHHH-----------HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1111 11223334443 35667889999999999886 3345689999999999999999999
Q ss_pred HHHHHHhhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccch
Q 012143 187 SVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 259 (470)
Q Consensus 187 ~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (470)
.++++++++.+.. ..++..+|.++..+|++++|+..|++++.+.|..... ...+.++.
T Consensus 164 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~-------------- 228 (383)
T 3ulq_A 164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP-QLMGRTLY-------------- 228 (383)
T ss_dssp HHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHH--------------
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh-HHHHHHHH--------------
Confidence 9999999984433 4589999999999999999999999999886644321 11122221
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 012143 260 GEGACLDQASAVNVAKECLLAALK-----AD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 333 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~-----~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 333 (470)
.+|.++...|++++|+.+|+++++ .+ |..+.++..+|.++..+|++++|+.++++++.+.+.......
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------ 302 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY------ 302 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH------
Confidence 245555589999999999999999 46 778899999999999999999999999999987654322211
Q ss_pred HHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcccc---HHHHHHHHHHHhc-chhhhhHhhHHH
Q 012143 334 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELS-KMEECAGAGESA 409 (470)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-~~~~~~~~~l~~ 409 (470)
...+..++.++...|+ +.+|+..+++.-. +.....+..+|.
T Consensus 303 -----------------------------------~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 303 -----------------------------------LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp -----------------------------------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1124558888888888 8888888887533 344467889999
Q ss_pred HHHHhccHHHHHHHHHHHHhcCC
Q 012143 410 FLDQASAVNVAKECLLAALKADP 432 (470)
Q Consensus 410 ~~~~~~~~~~A~~~~~~al~~~p 432 (470)
++...|++++|+.+|++++++..
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998644
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=6.6e-23 Score=182.70 Aligned_cols=248 Identities=15% Similarity=0.112 Sum_probs=190.5
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-- 230 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-- 230 (470)
.+|..+.++..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+..+++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999995 66678899999999999999999999999999873
Q ss_pred ------CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 012143 231 ------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKAAHIWANLA 296 (470)
Q Consensus 231 ------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la 296 (470)
|....++..+|.++. ..|++++|+.+++++++.. |....++..+|
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYG---------------------KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHH---------------------HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 334455556665555 7999999999999999874 55678899999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHH
Q 012143 297 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 376 (470)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 376 (470)
.++...|++++|+.+|++++....... ....+....++..+|
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------------------~~~~~~~~~~~~~la 202 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKL--------------------------------------GPDDPNVAKTKNNLA 202 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTS--------------------------------------CTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHh--------------------------------------CCCCHHHHHHHHHHH
Confidence 999999999999999999988621100 000011235788899
Q ss_pred HHHhccccHHHHHHHHHHHhcchhh-----------------hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHH
Q 012143 377 AVQKTHHEVAAAFETEENELSKMEE-----------------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWA 439 (470)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 439 (470)
.++...|++++|+..+.+.+...+. ..+...+..+...+.+.+|+..+++++...|..+.++.
T Consensus 203 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 282 (311)
T 3nf1_A 203 SCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLK 282 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHH
Confidence 9999999999999999997652211 22334444555666778888899999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 440 NLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 440 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
.+|.+|...|++++|+.+|++++++.++
T Consensus 283 ~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 283 NLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998765
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=2.7e-22 Score=173.82 Aligned_cols=235 Identities=12% Similarity=-0.001 Sum_probs=155.3
Q ss_pred HhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhh
Q 012143 33 LEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN---AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCE 109 (470)
Q Consensus 33 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 109 (470)
.+..|+++..++.+|.. +...|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|++.
T Consensus 8 ~~~~~~~~~~~~~~a~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAME-FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ---CCSSHHHHHHHHHH-HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 45678888899999999 999999999999999999999988 88999999999999999999999999998866531
Q ss_pred cccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHH
Q 012143 110 ADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 189 (470)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 189 (470)
.. ..+++.+|.++...+.. .+...|++++|+..|++++..+|+++.+...+..+....+.
T Consensus 87 ~~---------~~a~~~lg~~~~~~~~~---~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-------- 146 (261)
T 3qky_A 87 RV---------PQAEYERAMCYYKLSPP---YELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-------- 146 (261)
T ss_dssp TH---------HHHHHHHHHHHHHHCCC---TTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH--------
T ss_pred hh---------HHHHHHHHHHHHHhccc---ccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH--------
Confidence 10 01122222222110000 01124444555555555555555444333222221111110
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 190 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
....++.+|.+|...|++++|+..|++++...|++ +.++..+|.++...+... ....
T Consensus 147 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~-----------~~~~ 206 (261)
T 3qky_A 147 ---------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQS-----------VRAR 206 (261)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTS-----------CGGG
T ss_pred ---------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccc-----------hhhc
Confidence 11224889999999999999999999999999984 557888888776321000 0001
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHH
Q 012143 267 QASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A 308 (470)
..|++++|+..|+++++..|+++ .+...++.++...++++++
T Consensus 207 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 207 QPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 34889999999999999999985 4566677777777666554
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=1.4e-21 Score=169.36 Aligned_cols=219 Identities=13% Similarity=0.026 Sum_probs=170.7
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-- 233 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-- 233 (470)
....|.++..++.+|..++..|++++|+..|+++++..|++ +.+++.+|.++..+|++++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34578889999999999999999999999999999999999 8999999999999999999999999999998865
Q ss_pred -hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH-----------------HHH
Q 012143 234 -PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW-----------------ANL 295 (470)
Q Consensus 234 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l 295 (470)
+.+++.+|.++..... .++...|++++|+..|+++++..|+++.+. +.+
T Consensus 88 ~~~a~~~lg~~~~~~~~-------------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSP-------------PYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHHHHCC-------------CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc-------------cccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677766651000 000018999999999999999999987666 788
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHH
Q 012143 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 375 (470)
Q Consensus 296 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 375 (470)
|.+|...|++++|+..|++++...|++.. .+.++..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------------------------------------------~~~a~~~l 191 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPW-------------------------------------------ADDALVGA 191 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTT-------------------------------------------HHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCch-------------------------------------------HHHHHHHH
Confidence 99999999999999999999998887542 12344455
Q ss_pred HHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCChH
Q 012143 376 AAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHR 452 (470)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~ 452 (470)
|.++...|+...+ ....|++++|+..|+++++..|+++ .+...++.++...++++
T Consensus 192 ~~~~~~~g~~~~~----------------------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 192 MRAYIAYAEQSVR----------------------ARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHTSCG----------------------GGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchh----------------------hcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 5555443322110 1245889999999999999999984 56677888888877776
Q ss_pred HHH
Q 012143 453 SSG 455 (470)
Q Consensus 453 ~A~ 455 (470)
++.
T Consensus 250 ~~~ 252 (261)
T 3qky_A 250 GDA 252 (261)
T ss_dssp TCT
T ss_pred hhh
Confidence 554
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=5.2e-23 Score=183.35 Aligned_cols=255 Identities=13% Similarity=0.119 Sum_probs=195.5
Q ss_pred CCCCcchhhhcccchhhhhcChhhHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 36 GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARK--------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 36 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
+|+....+..+|.. +...|++++|...++++++. +|..+.++..+|.++...|++++|+.+|++++.....
T Consensus 23 ~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQ-YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45566788999999 99999999999999999984 6777889999999999999999999999999987532
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC--------ccchHHHHHHHHHHHHc
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--------TRQAVVWNTLGLILLKS 179 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~ 179 (470)
... ++......++..++.++ ...|++++|+..+++++... |....++..+|.++...
T Consensus 102 ~~~----~~~~~~~~~~~~l~~~~-----------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 102 TLG----KDHPAVAATLNNLAVLY-----------GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHC----TTCHHHHHHHHHHHHHH-----------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred HhC----CCChHHHHHHHHHHHHH-----------HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 100 11122234455555554 56677899999999999874 66778999999999999
Q ss_pred CChHHHHHHHHHHhhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCChHHHHHHHH
Q 012143 180 GRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD---------QNHPAALINYAA 242 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~l~~ 242 (470)
|++++|+.+|++++.. .|....++..+|.++...|++++|+..+++++... +.....+.....
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999998 66677899999999999999999999999999753 333333444443
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
... .+..+...+.+.+++..+.++....|..+.++..+|.++...|++++|+.+|++++++.|.
T Consensus 247 ~~~---------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 247 REE---------------CKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHH---------------C-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHH---------------hcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 333 3455567888888999999999999999999999999999999999999999999998775
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.89 E-value=1.3e-20 Score=172.56 Aligned_cols=243 Identities=16% Similarity=0.071 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
.++.+|..+...|++++|+..|++++.+.+ ..+.++..+|.+|...|++++|+..+++++.+.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567799999999999999999999998743 24568999999999999999999999999988765433112223
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
.++. .+|.++...|++++|+.+|++++++.+. ...++.++|.+|..+|++++|+.+|+++
T Consensus 183 ~~~~--------------~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 183 QSLF--------------VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3332 2466666899999999999999987432 3568899999999999999999999999
Q ss_pred HhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHH
Q 012143 316 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE 395 (470)
Q Consensus 316 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 395 (470)
+.+.+.... |..+.++..+|.++...|++++|+..++++
T Consensus 249 l~~~~~~~~-----------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 249 AKVSREKVP-----------------------------------------DLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHCG-----------------------------------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhCC-----------------------------------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 985332110 012357889999999999999999999996
Q ss_pred hcc-------hhhhhHhhHHHHHHHhcc---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 396 LSK-------MEECAGAGESAFLDQASA---VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 396 ~~~-------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+.. ........++.++...++ +.+|+.++++ ....|....++..+|.+|...|++++|..+|++++++.
T Consensus 288 l~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 652 112334567777878888 8899998887 33445567788999999999999999999999999875
Q ss_pred c
Q 012143 466 C 466 (470)
Q Consensus 466 ~ 466 (470)
.
T Consensus 367 ~ 367 (378)
T 3q15_A 367 E 367 (378)
T ss_dssp H
T ss_pred H
Confidence 4
No 72
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.88 E-value=3.8e-22 Score=156.49 Aligned_cols=142 Identities=11% Similarity=0.189 Sum_probs=134.0
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++++|+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC-LLAALKADPKAAHIWANLANAYY 300 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~la~~~~ 300 (470)
.|+++++++|+++.++..+|.++. ..|++++|... ++++++++|+++.++..++.++.
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~---------------------~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLC---------------------KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH---------------------HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999999999998887 68888877765 58999999999999999999998
Q ss_pred HcCC
Q 012143 301 LTGD 304 (470)
Q Consensus 301 ~~g~ 304 (470)
..|+
T Consensus 146 ~~G~ 149 (150)
T 4ga2_A 146 CEGE 149 (150)
T ss_dssp TCCC
T ss_pred HhCc
Confidence 8885
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.88 E-value=4.7e-22 Score=195.13 Aligned_cols=204 Identities=11% Similarity=-0.023 Sum_probs=167.4
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHh--------hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL--------AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
...+|+++.+++..+ ...|++++|++.|++++ +.+|++..+++.+|.++..+|++++|+..|+++++.+
T Consensus 387 p~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 387 PLVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp BCCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 456888888888777 78999999999999999 8999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 310 (470)
|++..+++.+|.++. ..|++++|+..|+++++++|+++.++.++|.++..+|++++ +.
T Consensus 464 p~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 464 GWRWRLVWYRAVAEL---------------------LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp CCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TC
T ss_pred cchHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HH
Confidence 999999999999888 79999999999999999999999999999999999999999 99
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHH
Q 012143 311 CLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFE 390 (470)
Q Consensus 311 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 390 (470)
.|+++++++|++..+++ +
T Consensus 522 ~~~~al~~~P~~~~a~~----------------------------------------------~---------------- 539 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAF----------------------------------------------G---------------- 539 (681)
T ss_dssp HHHHHHHHCTTCHHHHH----------------------------------------------H----------------
T ss_pred HHHHHHHhCCchHHHHH----------------------------------------------H----------------
Confidence 99999999999654333 3
Q ss_pred HHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhh
Q 012143 391 TEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS-GKCLEKVLMVY 465 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 465 (470)
+|.++...|++++|+..|+++++++|++..+++++|.++...|+.+++ ...+++|++.+
T Consensus 540 ----------------lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 540 ----------------LARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp ----------------HHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 333566667777777777777777777777777777777665553333 44444444433
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.88 E-value=1.5e-21 Score=171.83 Aligned_cols=158 Identities=11% Similarity=0.085 Sum_probs=124.6
Q ss_pred ccHHHHHHHHHHhhhcCc------cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHc
Q 012143 146 EELEEILSKLKESMQSDT------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQS 213 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~ 213 (470)
|++++|+..|++++...+ ..+.++.++|.+|..+|++++|+.+|++++++.|.. ..++..+|.+|...
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 444555555555554422 225688999999999999999999999999987654 45899999999996
Q ss_pred -CCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 214 -GDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 214 -g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
|++++|+.+|++++++.|.. ..++..+|.++ ...|++++|+.+|++++++.|
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~---------------------~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK---------------------ALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------HHTTCHHHHHHHHHHHHHTTS
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH---------------------HHhCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998754 23344445444 489999999999999999998
Q ss_pred CCHH-------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 287 KAAH-------IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 287 ~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
++.. ++..+|.++..+|++++|+.+|++++.++|+...
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 7643 6889999999999999999999999999998654
No 75
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=3.1e-20 Score=184.61 Aligned_cols=348 Identities=12% Similarity=0.037 Sum_probs=207.1
Q ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCC----CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHH
Q 012143 4 EMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVD----ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHF 79 (470)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 79 (470)
+++......+.+...|.+.+++ +.+++++ ..|. +......+... ..+. +..+......+.-. .. .-
T Consensus 984 ~PeeVs~~vKaf~~aglp~Eai-eLLEKiv-l~~s~fs~n~~LqnlLi~t-AIka-D~~Rv~eyI~kLd~-----~d-~~ 1053 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELI-ELLEKIV-LDNSVFSEHRNLQNLLILT-AIKA-DRTRVMEYINRLDN-----YD-AP 1053 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHH-HHHHHHH-cCCCcccccHHHHHHHHHH-HHHh-ChhhHHHHHHHhhh-----cc-HH
Confidence 3445555677788899999999 8999988 4444 11111112222 1111 23333333332211 11 22
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhh
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 159 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 159 (470)
.+|.++...|.+++|...|+++-... .. ..++ +...+++++|+++++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~----------~A---~~VL-----------------ie~i~nldrAiE~Aerv- 1102 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNT----------SA---VQVL-----------------IEHIGNLDRAYEFAERC- 1102 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHH----------HH---HHHH-----------------HHHHhhHHHHHHHHHhc-
Confidence 37999999999999999999974221 00 0111 12456789999998866
Q ss_pred hcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 160 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 160 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
+.+.+|+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. ..-..
T Consensus 1103 ----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~ 1172 (1630)
T 1xi4_A 1103 ----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETE 1172 (1630)
T ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHH
Confidence 56899999999999999999999999886 789999999999999999999999999999887542 11223
Q ss_pred HHHHHHhhhcc-----cc--cccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 240 YAALLLCKYGS-----VL--AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 240 l~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
++.+|.....- .. .....+..+|..+...|++++|+.+|.++ ..|..+|.++.++|++++|++.+
T Consensus 1173 LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 45444421000 00 01122333455555555555555555543 24445555555555555555555
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHH
Q 012143 313 EKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 392 (470)
Q Consensus 313 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 392 (470)
+++ .++.+|...+.+....|++..|....
T Consensus 1245 rKA---------------------------------------------------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1245 RKA---------------------------------------------------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHh---------------------------------------------------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 544 12245555566666666666665554
Q ss_pred HHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 012143 393 ENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--TGDHRSSGKCLEKVLM 463 (470)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 463 (470)
.. +. ..++.+..++..|...|.+++|+.++++++.++|.+...+..+|.+|.+ -++..++++.|...+.
T Consensus 1274 l~-Ii-v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1274 LH-IV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred Hh-hh-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 42 11 1122233555566666666666666666666666666666666665533 3444455555544443
No 76
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=1.2e-20 Score=163.93 Aligned_cols=231 Identities=11% Similarity=0.058 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccc----
Q 012143 58 SSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP---- 131 (470)
Q Consensus 58 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 131 (470)
++|...+.+++.++|++..+|+.++.+....| ++++++.++.+++..+|++. .+|+..+.++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y------------~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY------------QIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH------------HHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666 66666666666666655532 1122222222
Q ss_pred cccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChH--HHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ--SSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
..++ ..+++++++..+.+++..+|.+..+|..++.+....|.++ ++++++.++++.+|.+..+|...+.+
T Consensus 118 ~~l~--------~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 118 ELNN--------NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHTT--------TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred Hhcc--------ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1110 0134588889999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHcCC------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC-HHHHHHHHHHHH
Q 012143 210 YFQSGD------MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAAL 282 (470)
Q Consensus 210 ~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~ 282 (470)
....|. ++++++++.+++..+|.+..+|..++.++. ..|+ .+....++.+++
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~---------------------~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE---------------------RFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH---------------------HTTCCGGGGHHHHHTTE
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH---------------------hcCCChHHHHHHHHHHH
Confidence 999988 999999999999999999999999998887 4555 444556777777
Q ss_pred hcC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCcccHHHHH
Q 012143 283 KAD---PKAAHIWANLANAYYLTGDHRSSGKCLEKAAK-LEPNCMSTRYAV 329 (470)
Q Consensus 283 ~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~l 329 (470)
..+ |.++.++..++.++...|+.++|+++|+.+.. .+|-....|...
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 766 88999999999999999999999999999996 799877766643
No 77
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=3.8e-20 Score=160.67 Aligned_cols=230 Identities=10% Similarity=0.027 Sum_probs=190.3
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC--ChHHHHHHHHHHhhcCCCChHHHHHHHHHH----HHc---CCHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--RLQSSISVLSSLLAVDPNNCDCIGNLGIAY----FQS---GDMEQ 218 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~----~~~---g~~~~ 218 (470)
.++|+..+.+++..+|++..+|..++.++...| ++++++..+.+++..+|++..+|...+.++ ... +++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 378999999999999999999999999999999 999999999999999999999999999999 777 78999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHH--HHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN--VAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
++..+.++++.+|.+..+|...+.++. ..|.++ ++++++.++++.+|.+..+|...+
T Consensus 129 EL~~~~~~l~~~pkny~aW~~R~~vl~---------------------~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~ 187 (306)
T 3dra_A 129 EFDILEAMLSSDPKNHHVWSYRKWLVD---------------------TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhcccChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999988887 577777 999999999999999999999999
Q ss_pred HHHHHcCC------hhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHH
Q 012143 297 NAYYLTGD------HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 370 (470)
Q Consensus 297 ~~~~~~g~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (470)
.+....|. ++++++++++++..+|++..+|+.+.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~---------------------------------------- 227 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL---------------------------------------- 227 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH----------------------------------------
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH----------------------------------------
Confidence 99999887 89999999999999999876665443
Q ss_pred HHHHHHHHHhccccHHHHHH-HHHHHhc-----chhhhhHhhHHHHHHHhccHHHHHHHHHHHHh-cCCCcHHHHHHHHH
Q 012143 371 AWAGFAAVQKTHHEVAAAFE-TEENELS-----KMEECAGAGESAFLDQASAVNVAKECLLAALK-ADPKAAHIWANLAN 443 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~-~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~ 443 (470)
.++...|+..+++. ...+.+. +....++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+.
T Consensus 228 ------~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 228 ------GIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp ------HHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ------HHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 33333333222222 2222111 33456677777788888888999999999886 78988888887765
Q ss_pred H
Q 012143 444 A 444 (470)
Q Consensus 444 ~ 444 (470)
.
T Consensus 302 ~ 302 (306)
T 3dra_A 302 K 302 (306)
T ss_dssp T
T ss_pred h
Confidence 4
No 78
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=6.7e-21 Score=158.60 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=149.9
Q ss_pred ChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHH
Q 012143 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 153 (470)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 153 (470)
+++.++..|..+...|++++|+..|+++++.+|++.. +++..+. .
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~~~~-----~------------------ 47 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE------------MYYWTNV-----D------------------ 47 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH------------HHHHHHS-----C------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------------HHHHhhh-----c------------------
Confidence 4677888899999999999999999999998766421 1111110 0
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 012143 154 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 233 (470)
......+.....+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 48 ------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 48 ------KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp ------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred ------chhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 00111234556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 012143 234 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 313 (470)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 313 (470)
+.++..+|.++... ..++...+...+.+++...|. ..+++.+|.++...|++++|+.+|+
T Consensus 122 ~~a~~~lg~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 122 LAANIFLGNYYYLT-------------------AEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------hHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999988632 223456677888887654332 4567889999999999999999999
Q ss_pred HHHhcCCCcc
Q 012143 314 KAAKLEPNCM 323 (470)
Q Consensus 314 ~a~~~~p~~~ 323 (470)
++++++|+..
T Consensus 182 ~al~l~P~~~ 191 (208)
T 3urz_A 182 KVILRFPSTE 191 (208)
T ss_dssp HHTTTSCCHH
T ss_pred HHHHhCCCHH
Confidence 9999999853
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.87 E-value=3.9e-20 Score=169.27 Aligned_cols=265 Identities=13% Similarity=0.012 Sum_probs=206.2
Q ss_pred cCcccHHHHHHHHHHhhhcCccch-----HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh------HHHHHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQA-----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIAYF 211 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~ 211 (470)
+..|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...|... .++..+|.++.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 456788999999999998877553 2678899999999999999999999998765432 34788999999
Q ss_pred HcCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 212 QSGDMEQSAKCFQDLILKDQ--------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
..|++++|+..+++++...+ .....+..++.++. ..|++++|+.++++++.
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW---------------------AWARLDEAEASARSGIE 163 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHH
Confidence 99999999999999998753 22233444555554 79999999999999999
Q ss_pred cCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHh
Q 012143 284 ADPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 358 (470)
Q Consensus 284 ~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (470)
..|. ...++..+|.++...|++++|..++++++...+..........
T Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~---------------------------- 215 (373)
T 1hz4_A 164 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS---------------------------- 215 (373)
T ss_dssp HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH----------------------------
T ss_pred HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH----------------------------
Confidence 8775 3467889999999999999999999999887443211100000
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh------hhHhhHHHHHHHhccHHHHHHHHHHHHhcCC
Q 012143 359 REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADP 432 (470)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 432 (470)
......+.++...|++++|...+...+...+. ..+..+|.++...|++++|+..+++++...+
T Consensus 216 -----------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 216 -----------NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp -----------HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11223445577889999999999886653322 2456788899999999999999999987644
Q ss_pred C------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 433 K------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 433 ~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
. ...++..+|.++...|++++|...|++++++.+.
T Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 2 2357888999999999999999999999988753
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.87 E-value=3.1e-19 Score=163.27 Aligned_cols=313 Identities=12% Similarity=0.051 Sum_probs=232.2
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChh-----HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAH-----AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
.+..+|.+ +...|++++|...+++++...|.+.. ++..+|.++...|++++|+..+++++...|....
T Consensus 16 ~~~~~a~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 88 (373)
T 1hz4_A 16 FNALRAQV-AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV------ 88 (373)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc------
Confidence 34567777 88999999999999999998876532 6788999999999999999999999998766322
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC--------ccchHHHHHHHHHHHHcCChHHHHHH
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--------TRQAVVWNTLGLILLKSGRLQSSISV 188 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~ 188 (470)
......++..++.++ ...|++++|+..+++++... |....++..+|.++...|++++|..+
T Consensus 89 ~~~~~~~~~~la~~~-----------~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 89 WHYALWSLIQQSEIL-----------FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp HHHHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 222233444455443 45677899999999998865 34556788899999999999999999
Q ss_pred HHHHhhcCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhh
Q 012143 189 LSSLLAVDPNN-----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGE 261 (470)
Q Consensus 189 ~~~a~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 261 (470)
+++++...|.. ..++..+|.++...|++++|...+++++.+.+. .+..+....... .
T Consensus 158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~----------------~ 221 (373)
T 1hz4_A 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV----------------R 221 (373)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH----------------H
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH----------------H
Confidence 99999987653 457889999999999999999999999977432 222222111000 1
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHh
Q 012143 262 GACLDQASAVNVAKECLLAALKADPKA----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 337 (470)
Q Consensus 262 ~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 337 (470)
+.++...|++++|..++++++...|.. ...+..+|.++...|++++|...+++++...+.......
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~---------- 291 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD---------- 291 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh----------
Confidence 233457999999999999999877653 336788999999999999999999999876544221110
Q ss_pred hhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccH
Q 012143 338 ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAV 417 (470)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (470)
...++..++.++...|++++|...+.+.+...... +....+...|
T Consensus 292 ------------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~---g~~~~~~~~g-- 336 (373)
T 1hz4_A 292 ------------------------------LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT---GFISHFVIEG-- 336 (373)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CCCHHHHTTH--
T ss_pred ------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc---cHHHHHHHcc--
Confidence 12356778888888999999999888866533321 1112344444
Q ss_pred HHHHHHHHHHHhcCCC
Q 012143 418 NVAKECLLAALKADPK 433 (470)
Q Consensus 418 ~~A~~~~~~al~~~p~ 433 (470)
+.....+++.+...|-
T Consensus 337 ~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 337 EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCC
Confidence 5667777888877775
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.87 E-value=5.2e-21 Score=187.79 Aligned_cols=187 Identities=11% Similarity=-0.023 Sum_probs=147.1
Q ss_pred cCCCCcchhhhcccchhhhhcChhhHHHHHHHHH--------HhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 012143 35 FGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVA--------RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILL 106 (470)
Q Consensus 35 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 106 (470)
.+|+++..++..| ...|++++|+..+++++ +.+|+++.+++.+|.++...|++++|+..|+++++.
T Consensus 389 ~~p~~~~a~~~~a----~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-- 462 (681)
T 2pzi_A 389 VDPTDVAASVLQA----TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-- 462 (681)
T ss_dssp CCTTSTTHHHHHH----TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred CCCCCcchHHhhc----ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Confidence 4555555555443 34566666666666666 666666666666666666666666666666665554
Q ss_pred hhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHH
Q 012143 107 RCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSI 186 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 186 (470)
+|+++.+++.+|.++...|++++|+
T Consensus 463 -------------------------------------------------------~p~~~~a~~~lg~~~~~~g~~~~A~ 487 (681)
T 2pzi_A 463 -------------------------------------------------------VGWRWRLVWYRAVAELLTGDYDSAT 487 (681)
T ss_dssp -------------------------------------------------------HCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred -------------------------------------------------------CcchHHHHHHHHHHHHHcCCHHHHH
Confidence 6777889999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
..|+++++++|+++.++..+|.++..+|++++ +..|+++++++|++..+++++|.++.
T Consensus 488 ~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~--------------------- 545 (681)
T 2pzi_A 488 KHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS--------------------- 545 (681)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH---------------------
Confidence 99999999999999999999999999999999 99999999999999999998888887
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
..|++++|+..|+++++++|++..++.++|.++...++
T Consensus 546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 68999999999999999999999999999999877665
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.87 E-value=7.8e-22 Score=173.10 Aligned_cols=238 Identities=14% Similarity=0.154 Sum_probs=173.5
Q ss_pred CcccHHHHHHHHHHhhh--------cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------CCCChHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQ--------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLG 207 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la 207 (470)
..|++++|+..|++++. ..|..+.++..+|.++...|++++|+.+|+++++. .|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45566777777777766 23677889999999999999999999999999987 355677999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 208 IAYFQSGDMEQSAKCFQDLILK--------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
.++...|++++|+..|++++.. +|....++..+|.++. ..|++++|+.+++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~ 151 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ---------------------NQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHH
Confidence 9999999999999999999987 3555556666666665 7999999999999
Q ss_pred HHHhc--------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhH
Q 012143 280 AALKA--------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 351 (470)
Q Consensus 280 ~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 351 (470)
++++. .|....++..+|.++...|++++|+.++++++...|....
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------------------------- 204 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF--------------------------- 204 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS---------------------------
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---------------------------
Confidence 99998 7777889999999999999999999999999987543110
Q ss_pred HHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC
Q 012143 352 NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 431 (470)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 431 (470)
....+.....|..++......+.... ...+.++...++......
T Consensus 205 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 205 ----------GSVNGDNKPIWMHAEEREESKDKRRD--------------------------SAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp ----------SSCCSSCCCHHHHHHHHHHTTCCCCC--------------------------------------CCCCCC
T ss_pred ----------CCcchhHHHHHHHHHHHHhcCCchhH--------------------------HHHHHHHHHHHHhcCCCC
Confidence 00011112233333333332222211 122445555555555566
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 432 PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 432 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
|..+.++..+|.+|...|++++|+.+|++++++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7778888899999999999999999999888753
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=4.5e-20 Score=169.02 Aligned_cols=307 Identities=13% Similarity=0.055 Sum_probs=215.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCC---CChhHHHHHHHHH----HHhCChhHHH---------HHHHHHHHHHhhhhcccch
Q 012143 51 SSREEKVSSLKTGLVHVARKMP---KNAHAHFLLGLMY----QRLGQPLKAV---------SSYEKAEEILLRCEADIAR 114 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~----~~~g~~~~A~---------~~~~~al~~~~~~~~~~~~ 114 (470)
....+++++|...++++.+..+ .+...+...+... ...+.+..+. ..++++-.. +.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~------ 94 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP-QKK------ 94 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG-GHH------
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc-CCC------
Confidence 3567888999999988755332 3444443332222 2234444444 555443221 111
Q ss_pred hhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC------ccchHHHHHHHHHHHHcCChHHHHHH
Q 012143 115 PELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD------TRQAVVWNTLGLILLKSGRLQSSISV 188 (470)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~ 188 (470)
.+.......++..|.. +...|++++|+..|++++... |..+.++..+|.++...|++++|+.+
T Consensus 95 ~~~~l~~~~~~~~g~~-----------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~ 163 (378)
T 3q15_A 95 LTGLLKYYSLFFRGMY-----------EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163 (378)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH-----------HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0111111233344443 356678899999999998763 34567899999999999999999999
Q ss_pred HHHHhhcCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhh
Q 012143 189 LSSLLAVDPN-------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGE 261 (470)
Q Consensus 189 ~~~a~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 261 (470)
+++++++.+. ...++..+|.++...|++++|+..|++++.+.+...... ..+.++. .+
T Consensus 164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~--------------~l 228 (378)
T 3q15_A 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR-FIAISLL--------------NI 228 (378)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHH--------------HH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHH--------------HH
Confidence 9999987443 245788999999999999999999999998754221111 1122221 24
Q ss_pred hhHHHhcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q 012143 262 GACLDQASAVNVAKECLLAALK-----ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKD 336 (470)
Q Consensus 262 ~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 336 (470)
|.++...|++++|+.+|++++. .+|..+.++..+|.++...|++++|+.++++++.+.+......+
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------- 299 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY--------- 299 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH---------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH---------
Confidence 5555689999999999999999 78888999999999999999999999999999998766332111
Q ss_pred hhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcccc---HHHHHHHHHHHhc-chhhhhHhhHHHHHH
Q 012143 337 AERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELS-KMEECAGAGESAFLD 412 (470)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-~~~~~~~~~l~~~~~ 412 (470)
...+..++.++...++ +.+|+..+.+.-. +.....+..+|.++.
T Consensus 300 --------------------------------~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 300 --------------------------------KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp --------------------------------HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 1133456666777776 7888888777332 334466779999999
Q ss_pred HhccHHHHHHHHHHHHhcC
Q 012143 413 QASAVNVAKECLLAALKAD 431 (470)
Q Consensus 413 ~~~~~~~A~~~~~~al~~~ 431 (470)
..|++++|+.+|+++++..
T Consensus 348 ~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=3.8e-21 Score=169.20 Aligned_cols=218 Identities=14% Similarity=0.051 Sum_probs=162.0
Q ss_pred ChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccC
Q 012143 56 KVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 135 (470)
Q Consensus 56 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (470)
++++|...|.++ |.+|...|++++|+..|++++.+.+... +....+.++..+|.++
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~a~~~~~lg~~~---- 87 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAG------NEDEAGNTYVEAYKCF---- 87 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHH----
Confidence 477777777765 5677778888888888888888765421 1122334555555554
Q ss_pred CCccccccCcccHHHHHHHHHHhhhcCccc------hHHHHHHHHHHHHc-CChHHHHHHHHHHhhcCCCC------hHH
Q 012143 136 DNSLDKELEPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPNN------CDC 202 (470)
Q Consensus 136 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~ 202 (470)
...|++++|+..|++++...|.. ..++..+|.+|... |++++|+.+|++++++.|.. ..+
T Consensus 88 -------~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 88 -------KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp -------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 34455688888888888776643 45888999999996 99999999999999997754 467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH-------HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA-------LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
+..+|.++..+|++++|+..|++++.+.|.+... +..+|.++ ...|++++|+
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~---------------------~~~g~~~~A~ 219 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ---------------------LAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH---------------------HHTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH---------------------HHcCCHHHHH
Confidence 8999999999999999999999999999887542 34444444 4899999999
Q ss_pred HHHHHHHhcCCCCHHH-----HHHHHHHHH--HcCChhHHHHHHHHHHhcCCCcccH
Q 012143 276 ECLLAALKADPKAAHI-----WANLANAYY--LTGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
.+|+++++++|+.... +..++..+. ..+++++|+..|++++.++|.....
T Consensus 220 ~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 9999999999986553 445566554 4577999999999999988876433
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=1e-20 Score=157.45 Aligned_cols=180 Identities=14% Similarity=0.096 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN----------------LGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.++.++..|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35567777888888888888888888888888887777777 55555555555555555555555
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 308 (470)
++|+++.++..+|.++. ..|++++|+.+|+++++++|+++.++..+|.+|+..|+.+
T Consensus 83 ~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~-- 139 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQV---------------------CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE-- 139 (208)
T ss_dssp HCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH--
T ss_pred HCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH--
Confidence 55555555444444444 3445555555555555555555555555555444433211
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHH
Q 012143 309 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 388 (470)
Q Consensus 309 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 388 (470)
...+
T Consensus 140 ----------------------------------------------------------------------------~~~~ 143 (208)
T 3urz_A 140 ----------------------------------------------------------------------------KKKL 143 (208)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1222
Q ss_pred HHHHHHHhcchhh-hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012143 389 FETEENELSKMEE-CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 444 (470)
Q Consensus 389 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 444 (470)
...+...+.+.+. .+++.+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 144 ETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 2233332222222 245566778888899999999999999999974 344445544
No 86
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=3.7e-21 Score=171.95 Aligned_cols=239 Identities=12% Similarity=0.096 Sum_probs=105.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChh
Q 012143 13 KKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPL 92 (470)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 92 (470)
..+.+.|+.++|. +.+++. +++..|..+|.. +...|++++|++.|.++ +++..+..++..+...|+++
T Consensus 11 ~ll~~~~~ld~A~-~fae~~-----~~~~vWs~La~A-~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 11 VLIEHIGNLDRAY-EFAERC-----NEPAVWSQLAKA-QLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHH-HHHHhC-----CChHHHHHHHHH-HHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHH
Confidence 4466788888888 777776 344699999999 99999999999999763 56779999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHH
Q 012143 93 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 172 (470)
Q Consensus 93 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 172 (470)
+|+.+++.+.+..+++ .+...++.+ +.+.|++.++.+.++. | +..+|..+
T Consensus 79 eAi~yl~~ark~~~~~-------------~i~~~Li~~-----------Y~Klg~l~e~e~f~~~-----p-n~~a~~~I 128 (449)
T 1b89_A 79 ELVKYLQMARKKARES-------------YVETELIFA-----------LAKTNRLAELEEFING-----P-NNAHIQQV 128 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTTC-----C---------
T ss_pred HHHHHHHHHHHhCccc-------------hhHHHHHHH-----------HHHhCCHHHHHHHHcC-----C-cHHHHHHH
Confidence 9999999988753221 122233333 3456777888877742 4 34699999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccc
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 252 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 252 (470)
|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.++++ +++.+|...+.++.
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv------- 188 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV------- 188 (449)
T ss_dssp --------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH-------
T ss_pred HHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH-------
Confidence 99999999999999999986 57899999999999999999999999 47888888888877
Q ss_pred cccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 253 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
..|+++.|..+... +..+|+ -...+..+|.+.|++++|+.++++++.+++.+...+..++.
T Consensus 189 --------------~~~ef~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~i 249 (449)
T 1b89_A 189 --------------DGKEFRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 249 (449)
T ss_dssp --------------HTTCHHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred --------------HcCcHHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 69999999887775 335554 45568899999999999999999999999888776666654
No 87
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=8.1e-19 Score=174.57 Aligned_cols=273 Identities=13% Similarity=0.089 Sum_probs=190.9
Q ss_pred CCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 37 VDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
.+++..|+.+|.. +...|++++|+..|.++ ++++.+..+|.++.+.|++++|+++|..+.+..+.+...
T Consensus 1102 vn~p~vWsqLAKA-ql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id----- 1170 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKA-QLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE----- 1170 (1630)
T ss_pred cCCHHHHHHHHHH-HHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc-----
Confidence 4678889999999 99999999999999764 788888999999999999999999999888765332110
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 196 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 196 (470)
..++.+| .+.+++++ ++.|. ..| +...+..+|..+...|+|++|..+|.++
T Consensus 1171 --------t~LafaY-----------AKl~rlee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1171 --------TELIFAL-----------AKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred --------HHHHHHH-----------HhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 0122222 23344553 33332 233 3456668999999999999999999985
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
..|..+|.++.++|++++|++.++++ .++.+|...+.++. ..|++..|..
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acv---------------------e~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV---------------------DGKEFRLAQM 1271 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHh---------------------hhhHHHHHHH
Confidence 47889999999999999999999988 45678888877776 5888999988
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHH
Q 012143 277 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 356 (470)
Q Consensus 277 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
+... +..+ ++.+..++..|...|.+++|+.++++++.++|.+...+..++.....- ..+.+.... +
T Consensus 1272 cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy------~peklmEhl----k 1337 (1630)
T 1xi4_A 1272 CGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF------KPQKMREHL----E 1337 (1630)
T ss_pred HHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC------CHHHHHHHH----H
Confidence 8774 4333 555668899999999999999999999999988776665555432220 011111111 1
Q ss_pred HhhcCCCCCC-----CcHHHHHHHHHHHhccccHHHHHHHHH
Q 012143 357 ILREGDPVQI-----EPPIAWAGFAAVQKTHHEVAAAFETEE 393 (470)
Q Consensus 357 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~ 393 (470)
.+.....+++ ..+..|..+..+|.+.|+++.|+...-
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1111122222 345567777777777777777764433
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.85 E-value=1.2e-19 Score=153.25 Aligned_cols=206 Identities=13% Similarity=0.087 Sum_probs=157.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 238 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~ 238 (470)
.+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467889999999999999999999999999988874 68999999999999999999999999999999875 677
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.+|.++.. .+. .....+..++.++...|++++|+..|+++++.
T Consensus 83 ~~g~~~~~---------------------~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 83 MRGLTNMA---------------------LDD----------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHH---------------------HHC------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh---------------------hhh----------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 77777652 221 12233556677778889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
.|++..+...... ++.+..
T Consensus 126 ~P~~~~a~~a~~~-------------------------------------------l~~~~~------------------ 144 (225)
T 2yhc_A 126 YPNSQYTTDATKR-------------------------------------------LVFLKD------------------ 144 (225)
T ss_dssp CTTCTTHHHHHHH-------------------------------------------HHHHHH------------------
T ss_pred CcCChhHHHHHHH-------------------------------------------HHHHHH------------------
Confidence 9998765432211 111100
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
......+.+|.++...|++++|+..|+++++..|+++ .+++.+|.++..+|++++|+..++++....|.+
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 0011234567789999999999999999999999985 789999999999999999999999988877654
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.85 E-value=4e-21 Score=150.68 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=126.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|++.|+++++++|+++.++..+|.++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~----- 76 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE----- 76 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----
Confidence 478889999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHHHhcCCCcccHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC-LEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~p~~~~~~~~l 329 (470)
..|++++|+.+|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++...
T Consensus 77 ----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 77 ----------------LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred ----------------HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 799999999999999999999999999999999999999987765 599999999998876654
Q ss_pred H
Q 012143 330 A 330 (470)
Q Consensus 330 ~ 330 (470)
+
T Consensus 141 ~ 141 (150)
T 4ga2_A 141 E 141 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=6.1e-20 Score=150.05 Aligned_cols=162 Identities=17% Similarity=0.228 Sum_probs=154.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 97 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP 97 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 301 (470)
.+++++...|.++..+..++.++. ..|++++|+.++++++...|+++.++..+|.++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 98 LLIKVAEANPINFNVRFRLGVALD---------------------NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHhHHHHHHHHHHHH---------------------HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 999999999999999988888877 79999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCccc
Q 012143 302 TGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
.|++++|+.++++++...|++..
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 157 MGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TTCHHHHHHHHHHHHHHHHCCCG
T ss_pred cCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999999888654
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.85 E-value=2.1e-19 Score=151.64 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH---HHHHHHHHHH------------------HcCCHHHHHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD---CIGNLGIAYF------------------QSGDMEQSAKCFQD 225 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~------------------~~g~~~~A~~~~~~ 225 (470)
.+++.+|.++...|++++|+..|+++++.+|+++. +++.+|.++. ..|++++|+..|++
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 34444555555555555555555555555444432 4444444444 47889999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLT 302 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~ 302 (470)
+++..|+++.++..+..+..... ........+|.++...|++++|+..|+++++..|+++ .++..+|.++..+
T Consensus 122 ~l~~~P~~~~a~~a~~~l~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 122 LVRGYPNSQYTTDATKRLVFLKD----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 99999988766543322211100 0011224568888899999999999999999999976 6799999999999
Q ss_pred CChhHHHHHHHHHHhcCCCccc
Q 012143 303 GDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 303 g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
|++++|+..++++....|++..
T Consensus 198 g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 198 QMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp TCHHHHHHHHHHHHHCCSCCCC
T ss_pred CCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999999999988654
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=2.8e-19 Score=146.04 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666665555555555554444
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
..|++++|+.++++++...|.++.++..+|.++...|++++|+.++++++...|+
T Consensus 88 ---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 88 ---------------------QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp ---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------------------HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 4555555555555555555555555555555555555555555555555544444
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.84 E-value=1.2e-20 Score=165.41 Aligned_cols=237 Identities=14% Similarity=0.128 Sum_probs=175.3
Q ss_pred hhcChhhHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHh
Q 012143 53 REEKVSSLKTGLVHVARK--------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH 124 (470)
Q Consensus 53 ~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 124 (470)
..|++++|+..++++++. +|..+.++..+|.++...|++++|+.+|+++++....... ++......++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~ 88 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG----KDHPAVAATL 88 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----TTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC----CcchHHHHHH
Confidence 345556666666666552 3667889999999999999999999999999987522100 1112234455
Q ss_pred hhccccccccCCCccccccCcccHHHHHHHHHHhhhc--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-
Q 012143 125 HAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV- 195 (470)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 195 (470)
..+|.++ ...|++++|+..+++++.. +|....++..+|.++...|++++|+.+|+++++.
T Consensus 89 ~~l~~~~-----------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 89 NNLAVLY-----------GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHHH-----------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5566554 5667789999999999987 5778889999999999999999999999999998
Q ss_pred -------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCChHHHHHHHHHHHhhhcccccccccch
Q 012143 196 -------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK---------DQNHPAALINYAALLLCKYGSVLAGAGANT 259 (470)
Q Consensus 196 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (470)
.|....++..+|.++...|++++|+..+++++.. .+.....+..++......
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 225 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK------------ 225 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT------------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC------------
Confidence 6777889999999999999999999999999986 444555566655555421
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 260 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
........+..+...+.......|..+.++..+|.++...|++++|+.+|+++++..
T Consensus 226 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 226 ---DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ---CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ---CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 111133445566666666655667788899999999999999999999999998753
No 94
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.84 E-value=6.3e-20 Score=138.87 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=107.6
Q ss_pred HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 012143 157 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 236 (470)
Q Consensus 157 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 236 (470)
++..++|+.+..+..+|..++..|+|++|+..|+++++++|.++.++..+|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34457898899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 237 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
+..+|.++. ..|++++|+..|+++++++|++..++..++.++
T Consensus 84 ~~~lg~~~~---------------------~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLV---------------------AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 888888887 689999999999999999999999988888763
No 95
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.83 E-value=3.4e-18 Score=149.10 Aligned_cols=241 Identities=12% Similarity=0.058 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhcccchhhhhcC----------hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChh
Q 012143 23 SRISSKMDSALEFGVDADGDQSGLGTSSSSREEK----------VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPL 92 (470)
Q Consensus 23 ~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 92 (470)
+++ ..+..+|..+|++..+|+..+.+ +...+. ++++..++..++..+|++..+|..++.+....|+.
T Consensus 48 eaL-~~t~~~L~~nP~~ytaWn~Rr~i-L~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~- 124 (331)
T 3dss_A 48 SVL-ELTSQILGANPDFATLWNCRREV-LQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP- 124 (331)
T ss_dssp HHH-HHHHHHHTTCTTCHHHHHHHHHH-HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC-
T ss_pred HHH-HHHHHHHHHCchhHHHHHHHHHH-HHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc-
Confidence 444 66666666666666666666666 544433 45666666666666666666666666666655431
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHH
Q 012143 93 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 172 (470)
Q Consensus 93 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 172 (470)
.+++++.++.+++..+|.+..+|...
T Consensus 125 ------------------------------------------------------~~~~EL~~~~k~l~~dprNy~AW~~R 150 (331)
T 3dss_A 125 ------------------------------------------------------NWARELELCARFLEADERNFHCWDYR 150 (331)
T ss_dssp ------------------------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------------------------------------------------cHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 13566777777777789999999999
Q ss_pred HHHHHHcCC-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCChHHH
Q 012143 173 GLILLKSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS--------------GDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 173 ~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+.+....|. ++++++++.++++.+|.+..+|..++.++... +.++++++++.+++..+|++..+|
T Consensus 151 ~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 151 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 230 (331)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999998 58999999999999999999999999998877 568999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCChhHHHHHHHH
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY---LTGDHRSSGKCLEK 314 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~ 314 (470)
+.+..++....+. ...+ -...+.++++++.+.++++..|++...+..++.+.. ..|..++...++.+
T Consensus 231 ~Y~r~ll~~~~~~--------~~~~--~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (331)
T 3dss_A 231 FYHRWLLGAGSGR--------CELS--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 300 (331)
T ss_dssp HHHHHHHHSSSCG--------GGCC--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhccCc--------cccc--hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 8776666532110 0000 123456899999999999999999666555554433 25778899999999
Q ss_pred HHhcCCCcccHHHHHH
Q 012143 315 AAKLEPNCMSTRYAVA 330 (470)
Q Consensus 315 a~~~~p~~~~~~~~l~ 330 (470)
.++++|....-+..+.
T Consensus 301 l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 301 LKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHCGGGHHHHHHHH
T ss_pred HHHhCcchhhHHHHHH
Confidence 9999999776655443
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.82 E-value=2.9e-19 Score=144.53 Aligned_cols=140 Identities=17% Similarity=0.109 Sum_probs=108.4
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+|...+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++.....++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 3445567788888899999999999999999999999999999999999999999999999999988888 766554444
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.+... ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 81 ~~~~~--------------------~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 81 KLELH--------------------QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHH--------------------HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHH--------------------hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 33221 1222335788888888888888888888888888888888888888888888876
Q ss_pred c
Q 012143 322 C 322 (470)
Q Consensus 322 ~ 322 (470)
.
T Consensus 141 ~ 141 (176)
T 2r5s_A 141 A 141 (176)
T ss_dssp T
T ss_pred c
Confidence 3
No 97
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.4e-20 Score=168.18 Aligned_cols=284 Identities=13% Similarity=0.110 Sum_probs=136.4
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
....|++++|.+.++++ +++.+|..+|..+...|++++|++.|.++-.. . .+...+..
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~----------~-------~y~~V~~~ 70 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP----------S-------SYMEVVQA 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH----------H-------HHHHHHHH
Confidence 55678899999999987 33569999999999999999999999875211 1 11112221
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.+.++. |+ ..+|..+|..+
T Consensus 71 -----------ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~ 132 (449)
T 1b89_A 71 -----------ANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRC 132 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTTC-----C-------------
T ss_pred -----------HHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHH
Confidence 34568889999999998886444 77888999999999999999887753 43 46999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 211 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
...|+|++|+.+|.++ ..|..++.++. +.|++++|++.++++ .++.
T Consensus 133 ~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~---------------------~Lg~yq~AVea~~KA-----~~~~ 178 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNV--------SNFGRLASTLV---------------------HLGEYQAAVDGARKA-----NSTR 178 (449)
T ss_dssp ----CTTTHHHHHHHT--------TCHHHHHHHHH---------------------TTTCHHHHHHHHHHH-----TCHH
T ss_pred HHcCCHHHHHHHHHHh--------hhHHHHHHHHH---------------------HhccHHHHHHHHHHc-----CCch
Confidence 9999999999999987 35666776666 899999999999999 4689
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHH
Q 012143 291 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 370 (470)
Q Consensus 291 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (470)
+|...+.++...|+++.|..+... +...|++
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~------------------------------------------------ 209 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLH-IVVHADE------------------------------------------------ 209 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH------------------------------------------------
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh------------------------------------------------
Confidence 999999999999999999666554 2234432
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhcchh--hhhHhhHHHHHH--HhccHHHHHHHHHHHHhcCC-----CcHHHHHHH
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEENELSKME--ECAGAGESAFLD--QASAVNVAKECLLAALKADP-----KAAHIWANL 441 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l 441 (470)
...+...|.+.|.+++|+..++.++...+ ...+..+|.++. +-++..+.++.|...+.+.| +++..|..+
T Consensus 210 -l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 210 -LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 22366678888999999999998776443 355677777766 46778888888888888877 778889999
Q ss_pred HHHHHHcCChHHHHHHH
Q 012143 442 ANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 442 a~~~~~~g~~~~A~~~~ 458 (470)
..+|...++++.|+...
T Consensus 289 ~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHH
Confidence 99999999999888754
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.81 E-value=4.9e-19 Score=143.21 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=127.8
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHH-HcCCHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF-QSGDMEQSAKC 222 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~ 222 (470)
..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..+...+|+..
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~ 96 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKR 96 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHH
Confidence 445566666677777777888899999999999999999999999999999999 7777666665533 33344568999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYY 300 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~ 300 (470)
++++++.+|+++.+++.+|.++. ..|++++|+..|+++++.+|+. +.++..+|.++.
T Consensus 97 ~~~al~~~P~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 97 LEQELAANPDNFELACELAVQYN---------------------QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 99999999999999999988887 6999999999999999999875 669999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 012143 301 LTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~ 317 (470)
..|+.++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 99999999999998874
No 99
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.81 E-value=2e-17 Score=144.20 Aligned_cols=160 Identities=12% Similarity=0.070 Sum_probs=149.0
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC----------hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC--H
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD--M 216 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~ 216 (470)
++|+..+.+++..+|++..+|...+.++...+. +++++.++..++..+|++..+|...+.++...|+ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 689999999999999999999999999988776 6899999999999999999999999999999994 8
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
++++.++.++++.+|.+..+|...+.++. ..|. ++++++++.++++.+|.+..+|..+
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~---------------------~l~~~~~eel~~~~~~I~~~p~N~SAW~~R 185 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAA---------------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999998887 5676 6999999999999999999999999
Q ss_pred HHHHHHc--------------CChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 296 ANAYYLT--------------GDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 296 a~~~~~~--------------g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
+.++... +.++++++++.+++..+|++..+|+.+
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~ 233 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 233 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999887 558899999999999999999888643
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.81 E-value=7.9e-19 Score=169.69 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=140.9
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (470)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-- 302 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-- 302 (470)
++++.+|++..++..+|.++. ..|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 82 ~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALE---------------------DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999998887 799999999999999999999999999999999999
Q ss_pred -CChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 303 -GDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 303 -g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
|++++|...++++++.+|++...+..++
T Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999888776554
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=5.2e-19 Score=133.77 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=111.8
Q ss_pred HHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC
Q 012143 191 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 270 (470)
Q Consensus 191 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (470)
++..++|+.+..+..+|..+++.|++++|+..|+++++++|.++.++..+|.++. ..|+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------------------~~~~ 62 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT---------------------KLME 62 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTC
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH---------------------hhcc
Confidence 3456899999999999999999999999999999999999999999999998888 7999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 271 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 271 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
+++|+..|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|++..++..++.
T Consensus 63 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 63 FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776653
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.80 E-value=1e-18 Score=154.83 Aligned_cols=159 Identities=11% Similarity=0.108 Sum_probs=122.3
Q ss_pred ccHHHHHHHHHHhhhcCcc------chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHc
Q 012143 146 EELEEILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQS 213 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~ 213 (470)
|++++|+..|.+++...+. ...++..+|.+|..+|++++|+.+|++++++.+.. ..++..+|.+|..
T Consensus 50 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP- 128 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence 3444444444444443321 24577889999999999999999999999874322 4578899999998
Q ss_pred CCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 214 GDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
|++++|+.+|++++.+.|.. ..++..+ |.++...|++++|+.+|++++.+.|+
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l---------------------g~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA---------------------SRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH---------------------HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654 2333444 44555899999999999999998665
Q ss_pred C------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 288 A------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 288 ~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
+ ...+..+|.++..+|++++|+.+|++++ .+|.......
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHH
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHH
Confidence 3 3478889999999999999999999999 9998765543
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.80 E-value=4.1e-18 Score=149.16 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=147.2
Q ss_pred HhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccH
Q 012143 69 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 148 (470)
Q Consensus 69 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (470)
..-|.+...++.+|..+...|++++|+..|++++..
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------------------------------------- 146 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL-------------------------------------------- 146 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------------------------------------------
Confidence 335888888888888888888888888877777765
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
+|+++.+++.+|.++...|++++|+..+++++..+|+........+..+...++.++|+..+++++.
T Consensus 147 -------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~ 213 (287)
T 3qou_A 147 -------------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA 213 (287)
T ss_dssp -------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred -------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh
Confidence 6777888999999999999999999999999999997777777777778888888899999999999
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChh
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYYLTGDHR 306 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~ 306 (470)
.+|+++.+++.+|.++. ..|++++|+..|.++++.+|++ ..++..++.++...|+.+
T Consensus 214 ~~P~~~~~~~~la~~l~---------------------~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 214 ENPEDAALATQLALQLH---------------------QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred cCCccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 99999999999888887 6899999999999999999987 889999999999999999
Q ss_pred HHHHHHHHHHh
Q 012143 307 SSGKCLEKAAK 317 (470)
Q Consensus 307 ~A~~~~~~a~~ 317 (470)
+|...|++++.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999988875
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.80 E-value=1.4e-19 Score=140.78 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=76.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++.
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~--------------------- 81 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ--------------------- 81 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------
Confidence 34555566666666666666666666666666666666666666666666666666665
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
..|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|++++++.|+.
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 46666666666666666666666666666666666666666666666666666664
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.80 E-value=5.2e-19 Score=137.53 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+-.+-..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++..+|++++|+..|++++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34444567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 012143 228 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 289 (470)
.++|+++.+++.+|.++. ..|++++|+.+|++++++.|+.+
T Consensus 98 ~l~P~~~~~~~~lg~~~~---------------------~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQL---------------------RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHSSSCCHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hhCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999888 79999999999999999999854
No 106
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.80 E-value=1.3e-16 Score=153.83 Aligned_cols=399 Identities=10% Similarity=-0.017 Sum_probs=256.2
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC---hhHHHHHH
Q 012143 22 RSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ---PLKAVSSY 98 (470)
Q Consensus 22 ~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~ 98 (470)
.+.+ ..++..|..+|.+...|..+... ....+.+..+...|++++...|.....|...+......|+ ++.+...|
T Consensus 49 ~d~i-~~lE~~l~~np~d~~~W~~yi~~-~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVI-GKLNDMIEEQPTDIFLYVKLLKH-HVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHH-HHHHHHHHHCcCCHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3445 78999999999999999999998 8888999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccC--cccHHHHHHHHHHhhh---c-CccchHHHHHH
Q 012143 99 EKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE--PEELEEILSKLKESMQ---S-DTRQAVVWNTL 172 (470)
Q Consensus 99 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~---~-~p~~~~~~~~l 172 (470)
++++...|.+. ..+.+ ...+......+.. .. .+..+.....|++++. . +|....+|...
T Consensus 127 eRal~~~~~~~----sv~LW------~~Yl~f~~~~~~~-----~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 127 ARCLSKELGNN----DLSLW------LSYITYVRKKNDI-----ITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEY 191 (679)
T ss_dssp HHHTCSSSCCC----CHHHH------HHHHHHHHHHSCS-----TTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred HHHHHhcCCCC----CHHHH------HHHHHHHHHhccc-----ccccchhHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 99998763111 01111 1000000000000 00 0111233345555443 2 34444444444
Q ss_pred HHHHH---------HcCChHHHHHHHHHHhhcCCCCh-------------------------------------------
Q 012143 173 GLILL---------KSGRLQSSISVLSSLLAVDPNNC------------------------------------------- 200 (470)
Q Consensus 173 ~~~~~---------~~~~~~~A~~~~~~a~~~~~~~~------------------------------------------- 200 (470)
..... .+++.+.+..+|++++.+.....
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33322 12334455555555554311111
Q ss_pred -------------------------------HHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 201 -------------------------------DCIGNLGIAYFQSG-------DMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 201 -------------------------------~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
..|......-...+ ..+.....|++++...|.++..|...+.
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~ 351 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMAN 351 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11111111111111 0122345566666666666666666665
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAK-ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE-- 319 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-- 319 (470)
.+. ..|+.++|. .+|++++...|.+...|...+......|++++|...|++++...
T Consensus 352 ~~~---------------------~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 352 YQG---------------------EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHH---------------------HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH---------------------hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 554 678888997 99999999999999999999999999999999999999998752
Q ss_pred ---------CCc-----------ccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHH
Q 012143 320 ---------PNC-----------MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 379 (470)
Q Consensus 320 ---------p~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (470)
|.+ ...|...+ .+.. ...........+....... ++....+|...+.+.
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~--~~er---R~~~l~~AR~vf~~A~~~~------~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYM--NTMK---RIQGLAASRKIFGKCRRLK------KLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH--HHHH---HHHCHHHHHHHHHHHHHTG------GGSCTHHHHHHHHHH
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHH--HHHH---HcCCHHHHHHHHHHHHHhc------CCCChHHHHHHHHHH
Confidence 321 11222221 1111 1111111222222221110 112346777777777
Q ss_pred hccc-cHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCChHH
Q 012143 380 KTHH-EVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADP---KAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 380 ~~~~-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~ 453 (470)
...+ +++.|...|...+. +.....|...+......|+.+.|..+|++++...| ....+|......-...|+.+.
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 6665 48999999999877 44445666777778888999999999999999888 356788888888899999999
Q ss_pred HHHHHHHHHHhhccCC
Q 012143 454 SGKCLEKVLMVYCSSN 469 (470)
Q Consensus 454 A~~~~~~al~~~~~~~ 469 (470)
+.+.++++.+.+|+++
T Consensus 560 ~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHhCCCCc
Confidence 9999999999998753
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.79 E-value=5.6e-18 Score=150.09 Aligned_cols=175 Identities=11% Similarity=0.073 Sum_probs=136.3
Q ss_pred HhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch
Q 012143 87 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA 166 (470)
Q Consensus 87 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 166 (470)
..|++++|.++++++.+..+.. . +...+++++|+..|.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------------------~-----------~~~~~~~~~A~~~~~~a-------- 42 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------------------F-----------MKWKPDYDSAASEYAKA-------- 42 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------------------S-----------SSCSCCHHHHHHHHHHH--------
T ss_pred ccchHHHHHHHHHHHHHHcccc---------------------c-----------cCCCCCHHHHHHHHHHH--------
Confidence 4578889999999998764310 0 01146789999988876
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
|.+|...|++++|+.+|.+++++.+.. ..++..+|.+|..+|++++|+.+|++++.+.+..... ...
T Consensus 43 ------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-~~~ 115 (307)
T 2ifu_A 43 ------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP-DTA 115 (307)
T ss_dssp ------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH-HHH
T ss_pred ------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH-HHH
Confidence 678899999999999999999986532 4588999999999999999999999999885432111 011
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHH
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 314 (470)
+.++ ..+|.++.. |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+.+|++
T Consensus 116 a~~~--------------~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 116 AMAL--------------DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHH--------------HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1121 124555657 99999999999999987653 57899999999999999999999999
Q ss_pred HHhcCCCcc
Q 012143 315 AAKLEPNCM 323 (470)
Q Consensus 315 a~~~~p~~~ 323 (470)
++.+.|.+.
T Consensus 181 al~~~~~~~ 189 (307)
T 2ifu_A 181 EKSMYKEME 189 (307)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999877643
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.79 E-value=2e-17 Score=144.70 Aligned_cols=162 Identities=11% Similarity=0.058 Sum_probs=150.8
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-C-CHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-G-DMEQSAKCFQ 224 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~ 224 (470)
.++|+..+.+++..+|++..+|..++.++...| .+++++..+.+++..+|++..+|...+.++... + +++++++.+.
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 478999999999999999999999999999999 599999999999999999999999999999998 8 9999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN--------VAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
+++..+|.+..+|...+.++.. .|.++ ++++++.++++.+|.+..+|..++
T Consensus 150 k~L~~dpkNy~AW~~R~wvl~~---------------------l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~ 208 (349)
T 3q7a_A 150 GSLLPDPKNYHTWAYLHWLYSH---------------------FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW 208 (349)
T ss_dssp HHTSSCTTCHHHHHHHHHHHHH---------------------HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHH---------------------hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999988863 34444 999999999999999999999999
Q ss_pred HHHHHcCC-------hhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 297 NAYYLTGD-------HRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 297 ~~~~~~g~-------~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
.++...++ ++++++++++++..+|++..+|+.+.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr 249 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLR 249 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999987 78999999999999999999887643
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.78 E-value=1.1e-17 Score=146.36 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=111.0
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
.|.++..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 37788888888888888888888888888888888888888888888888888888888888888888885544444333
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
..+. ..++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|.++++.+|+
T Consensus 193 ~~l~---------------------~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 193 IELL---------------------XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHH---------------------HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHH---------------------hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3333 4666777788888888888888888888888888888888888888888877776
Q ss_pred c
Q 012143 322 C 322 (470)
Q Consensus 322 ~ 322 (470)
+
T Consensus 252 ~ 252 (287)
T 3qou_A 252 A 252 (287)
T ss_dssp G
T ss_pred c
Confidence 4
No 110
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.78 E-value=7.1e-18 Score=147.58 Aligned_cols=253 Identities=12% Similarity=0.050 Sum_probs=183.8
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 129 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (470)
....+..++|...+.+++..+|++..+|..++.+....| .+++++.++.+++..+|++. .+|...+.
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny------------~aW~hR~w 131 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY------------QVWHHRLL 131 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH------------HHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH------------HHHHHHHH
Confidence 445556678888888888888888888888888888888 48888888888888877642 33344444
Q ss_pred ccccc-CCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChH--------HHHHHHHHHhhcCCCCh
Q 012143 130 LPESS-GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ--------SSISVLSSLLAVDPNNC 200 (470)
Q Consensus 130 ~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~~~~~ 200 (470)
++..+ + .++++++..+.+++..+|.+..+|..++.+....|.++ +++++++++++.+|.+.
T Consensus 132 lL~~l~~----------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~ 201 (349)
T 3q7a_A 132 LLDRISP----------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN 201 (349)
T ss_dssp HHHHHCC----------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcC----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence 43332 2 03479999999999999999999999999999999888 99999999999999999
Q ss_pred HHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc-ccccchhhhhHHHhcCCHH
Q 012143 201 DCIGNLGIAYFQSGD-------MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA-GAGANTGEGACLDQASAVN 272 (470)
Q Consensus 201 ~~~~~la~~~~~~g~-------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 272 (470)
.+|..++.++...+. ++++++++++++..+|++..+|..+..++......... -...+..-|... .-...
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 279 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL--NPDIE 279 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccc--cccch
Confidence 999999999999987 79999999999999999999999888777642111000 000000000000 00012
Q ss_pred HHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hcCCCcccHHH
Q 012143 273 VAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAA-KLEPNCMSTRY 327 (470)
Q Consensus 273 ~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~ 327 (470)
.-.......+.. .+.++.++..++.+|...|+.++|.++++... +.+|-....|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 280 TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp ------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 222222222222 25688999999999999999999999999986 56776554443
No 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.78 E-value=9e-19 Score=156.83 Aligned_cols=203 Identities=16% Similarity=0.120 Sum_probs=168.8
Q ss_pred hhhhhhhhHHHHHHHHHH----HHhcCCCCcchhhhcccchhh------------hhcChhhHHHHHHHHHHhCCCChhH
Q 012143 14 KINKLGKCRSRISSKMDS----ALEFGVDADGDQSGLGTSSSS------------REEKVSSLKTGLVHVARKMPKNAHA 77 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~----~l~~~p~~~~~~~~~~~~~~~------------~~~~~~~A~~~~~~~l~~~p~~~~~ 77 (470)
.+.-.+.+++++ ..+.. ++.+.|+. +|...|.. .. ..+++++|+..+++++..+|.++.+
T Consensus 74 ~~~~~~~~e~al-~~~~~Ge~~~l~i~p~~--ayg~~g~~-~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~ 149 (336)
T 1p5q_A 74 NLDLPYGLERAI-QRMEKGEHSIVYLKPSY--AFGSVGKE-KFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTI 149 (336)
T ss_dssp GGTCCHHHHHHH-TTCCTTCEEEEEECTTT--TTTTTCBG-GGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHH
T ss_pred ccccchHHHHHH-hcCCCCCeEEEEECCcc--ccCcCCCC-ccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHH
Confidence 333456788888 88888 89999987 56666654 32 6688899999999999999999999
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHH
Q 012143 78 HFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE 157 (470)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 157 (470)
+..+|.++...|++++|+..|++++.+.|..... . . + .
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------------------------~-~--~-------~ 187 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------------------------S-N--E-------E 187 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------------------------C-S--H-------H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC--------------------------------C-h--H-------H
Confidence 9999999999999999999999999997764210 0 0 1 1
Q ss_pred hhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 158 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 158 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
.....|....++.++|.++..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++
T Consensus 188 ~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 267 (336)
T 1p5q_A 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 22334556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHH-HHHHHHHHh
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA-KECLLAALK 283 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~ 283 (470)
..++.++. ..|++++| ...|.+++.
T Consensus 268 ~~l~~~~~---------------------~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 268 TQLAVCQQ---------------------RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 99988887 57778877 445665553
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=9.7e-18 Score=162.05 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=96.7
Q ss_pred hcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccc
Q 012143 54 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 133 (470)
Q Consensus 54 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (470)
.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------------------- 52 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL----------------------------- 52 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----------------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------
Confidence 467788888888888888888888888888888888888777777777654
Q ss_pred cCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 012143 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 213 (470)
+|+++.++..+|.++..+|++++|+.+|+++++.+|+++.++..+|.++...
T Consensus 53 ----------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 104 (568)
T 2vsy_A 53 ----------------------------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA 104 (568)
T ss_dssp ----------------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ----------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3445556666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhc---CCHHHHHHHHHHHHhcCCCCHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQA---SAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
|++++|++.|+++++.+|++..++..++.++. .. |++++|+..++++++.+|.+..
T Consensus 105 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---------------------~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR---------------------RLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhhccccHHHHHHHHHHHHhcCCcccC
Confidence 66666666666666666666666666655555 35 6666666666666666666555
Q ss_pred HHHHHH
Q 012143 291 IWANLA 296 (470)
Q Consensus 291 ~~~~la 296 (470)
.+..++
T Consensus 164 ~~~~l~ 169 (568)
T 2vsy_A 164 PFAFLS 169 (568)
T ss_dssp HHHHTT
T ss_pred hHHHhC
Confidence 554444
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.77 E-value=2.9e-18 Score=133.80 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=86.8
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 153 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
++.+++.+|.++. ..|++++|+.+|++++++.|+++..
T Consensus 88 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLL---------------------QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 7777777766666 5777777777777777777665544
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.75 E-value=7.2e-17 Score=134.48 Aligned_cols=161 Identities=12% Similarity=0.047 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCC
Q 012143 58 SSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 137 (470)
Q Consensus 58 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (470)
.+|...|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+... ..+++.++.++.. +.
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~--------------~~a~~~lg~~y~~-~g- 64 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD--------------GDALALLAQLKIR-NP- 64 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHTTS-ST-
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHc-CC-
Confidence 3577888888764 7899999999999999999999999999876310 1222333333322 10
Q ss_pred ccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCC--CChHHHHHHHHHHH
Q 012143 138 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYF 211 (470)
Q Consensus 138 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~ 211 (470)
...++++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++++..| .++.+++.+|.+|.
T Consensus 65 ------~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 65 ------QQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp ------TSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 01145555555555532 3445555555555554 5555555555555555544 23455555555555
Q ss_pred H----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 212 Q----SGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 212 ~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
. .+++++|+.+|+++++. |.++.+++.+|.++.
T Consensus 137 ~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 137 SGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 5 55555555555555554 444445555554444
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.75 E-value=4.2e-18 Score=152.51 Aligned_cols=154 Identities=11% Similarity=0.105 Sum_probs=144.3
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---------------hHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGI 208 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~ 208 (470)
..+++++|+..+++++...|.++.++..+|.+++..|++++|+..|++++.++|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999998 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012143 209 AYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 288 (470)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 288 (470)
++..+|++++|+..|+++++++|+++.+++.+|.++. ..|++++|+..|+++++++|++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL---------------------AVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999998887 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHH-HHHHHHHHhc
Q 012143 289 AHIWANLANAYYLTGDHRSS-GKCLEKAAKL 318 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~ 318 (470)
..++..++.++..+|++++| ...|++++..
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 5577777654
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.75 E-value=2.3e-17 Score=139.56 Aligned_cols=211 Identities=10% Similarity=-0.032 Sum_probs=170.7
Q ss_pred hhcChhhHHHHHHHHHHhCCCChhHHHHH-------HHHHHHhCChhHHHHHHHHHHHHHhhhhcccch-hhh-------
Q 012143 53 REEKVSSLKTGLVHVARKMPKNAHAHFLL-------GLMYQRLGQPLKAVSSYEKAEEILLRCEADIAR-PEL------- 117 (470)
Q Consensus 53 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~------- 117 (470)
..++...|...|.+++..+|+.+++|..+ +.++...+++.+++..+++++.+.|..-..... ...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 47899999999999999999999999999 899999999999999999999987765322211 110
Q ss_pred -HHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 012143 118 -LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 196 (470)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 196 (470)
.+--.+...++.+ +...|++++|.+.|...+...|.+. +.+.+|.++.+.++|++|+..|+++....
T Consensus 98 v~~r~dl~LayA~~-----------L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 98 VTSPLAITMGFAAC-----------EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp CSSHHHHHHHHHHH-----------HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred cCCHhHHHHHHHHH-----------HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 0000111112222 4567888999999999999999999 99999999999999999999999887754
Q ss_pred CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH
Q 012143 197 PNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKD--QN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271 (470)
Q Consensus 197 ~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (470)
+.. ..+++.+|.++..+|++++|+..|++++... |. .+.+++.+|.++. +.|+.
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~---------------------~lGr~ 224 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR---------------------SQGNE 224 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH---------------------HHTCH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH---------------------HcCCH
Confidence 221 3589999999999999999999999998543 54 4567777777776 79999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 272 NVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 272 ~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
++|...|++++..+|+ ..++..|..
T Consensus 225 deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 225 SAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 9999999999999999 777766643
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.75 E-value=1.4e-17 Score=129.87 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=114.5
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhH
Q 012143 185 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264 (470)
Q Consensus 185 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 264 (470)
+-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.++..+|.++.
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------------------- 66 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ------------------- 66 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-------------------
Confidence 3457889999999999999999999999999999999999999999999999999998887
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHH
Q 012143 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 326 (470)
Q Consensus 265 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 326 (470)
..|++++|+.+|++++.++|+++.+++.+|.++...|++++|+..|++++++.|+++...
T Consensus 67 --~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 67 --AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp --HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred --HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 799999999999999999999999999999999999999999999999999999877653
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.74 E-value=1.7e-17 Score=128.83 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=89.0
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 153 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
..|++++..+|+++..++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
++.+++.+|.++. ..|++++|+.+|+++++++|+++........+
T Consensus 85 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 85 EPRFPFHAAECHL---------------------QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 7777777776666 57777777777777777777665554444333
No 119
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.74 E-value=1.9e-16 Score=121.71 Aligned_cols=134 Identities=30% Similarity=0.506 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
.+++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.++..+..++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY- 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-
Confidence 5688999999999999999999999999999999999999999999999999999999999999999988888887776
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
..|++++|+.++++++...|.++.++..+|.++...|++++|...+++++..+|+
T Consensus 81 --------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 --------------------KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp --------------------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred --------------------HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7999999999999999999999999999999999999999999999999999886
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.74 E-value=2.1e-17 Score=144.17 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=133.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
|.++..+..+|..+...|++++|+..|++++..+|+++.++..+|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~~~~~~A~~ 59 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQALA 59 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------HhcCHHHHHH
Confidence 4566777778888888888888888888888888888877777777776 5778888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHH
Q 012143 277 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 356 (470)
Q Consensus 277 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
.++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++...+.......+.
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--------------------- 118 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--------------------- 118 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---------------------
Confidence 88888888888888888888888888888888888888888877653221111000000
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHH
Q 012143 357 ILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAH 436 (470)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 436 (470)
......+.. ......+........++.. ..|++++|++.++++++.+|++..
T Consensus 119 ----------------------~~~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~ 170 (281)
T 2c2l_A 119 ----------------------IAKKKRWNS----IEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGH 170 (281)
T ss_dssp ----------------------HHHHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHH
T ss_pred ----------------------HHHHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhh
Confidence 000000000 0001111222222223222 257888999999999999998888
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHHh
Q 012143 437 IWANLANAYYLT-GDHRSSGKCLEKVLMV 464 (470)
Q Consensus 437 ~~~~la~~~~~~-g~~~~A~~~~~~al~~ 464 (470)
....++.++... +.+++|...|.++.+.
T Consensus 171 ~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 171 IRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888777665 7788888888887664
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.73 E-value=1.8e-17 Score=140.18 Aligned_cols=201 Identities=11% Similarity=-0.000 Sum_probs=165.5
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHH-------HHHHHHcCChHHHHHHHHHHhhcCCCCh----------------
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTL-------GLILLKSGRLQSSISVLSSLLAVDPNNC---------------- 200 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------- 200 (470)
..+++..|...|.+++..+|+.+++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 35778999999999999999999999999 8999999999999999999999877643
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 201 -----DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 201 -----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
++...++.++...|++++|.+.|..++...|.+. ..+.++.++. +.+++++|+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~---------------------~~~r~~dA~ 155 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG---------------------AAERWTDVI 155 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH---------------------HTTCHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH---------------------HcCCHHHHH
Confidence 3455588999999999999999999999899888 7788877776 799999999
Q ss_pred HHHHHHHhcCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHH
Q 012143 276 ECLLAALKADPKA--AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 353 (470)
Q Consensus 276 ~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 353 (470)
..|+++....+.. ..+++.+|.++..+|++++|+.+|++++... ..+..
T Consensus 156 ~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~---------------------------- 206 (282)
T 4f3v_A 156 DQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEAC---------------------------- 206 (282)
T ss_dssp HHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTT----------------------------
T ss_pred HHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccc----------------------------
Confidence 9999887753221 4589999999999999999999999998432 21110
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 012143 354 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 433 (470)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 433 (470)
...+++.+|.++.++|+.++|...|++++..+|+
T Consensus 207 ----------------------------------------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 207 ----------------------------------------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred ----------------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 1123444555788888889999999999999998
Q ss_pred cHHHHHHHH
Q 012143 434 AAHIWANLA 442 (470)
Q Consensus 434 ~~~~~~~la 442 (470)
+.++..|.
T Consensus 241 -~~~~~aL~ 248 (282)
T 4f3v_A 241 -PKVAAALK 248 (282)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHh
Confidence 77776664
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.73 E-value=6.2e-16 Score=128.78 Aligned_cols=150 Identities=16% Similarity=0.094 Sum_probs=128.5
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC----CHHHHHHHHH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAKCFQ 224 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~ 224 (470)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4678888888865 67999999999999999999999999999875 678999999999998 7 8999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH-
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYL- 301 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~- 301 (470)
++.. +.++.+++.+|.++.... ...+++++|+.+|+++.+..| .++.++..||.+|..
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~-----------------g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQ-----------------AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGG-----------------GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHH--CCCHHHHHHHHHHHHcCC-----------------CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 9954 678999999998886210 026899999999999999888 458999999999999
Q ss_pred ---cCChhHHHHHHHHHHhcCCCcc
Q 012143 302 ---TGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 302 ---~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.+++++|+.+|+++... |.++
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~-~~~~ 162 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL-SRTG 162 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT-SCTT
T ss_pred CCCCCCHHHHHHHHHHHHHc-CCCH
Confidence 88999999999999987 4444
No 123
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.72 E-value=2.6e-14 Score=137.81 Aligned_cols=380 Identities=11% Similarity=0.043 Sum_probs=259.5
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCC
Q 012143 57 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 136 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (470)
..+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|... .+ |...+..
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~------~l------W~~Yi~~------ 109 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA------NI------WCMRLSL------ 109 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HH------HHHHHHH------
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH------HH------HHHHHHH------
Confidence 45567788999999999999999999999999999999999999999987642 22 2222111
Q ss_pred CccccccCccc---HHHHHHHHHHhhhcCc--cchHHHHHHHHHHHHcCCh----HHH----HHHHHHHhh---c-CCCC
Q 012143 137 NSLDKELEPEE---LEEILSKLKESMQSDT--RQAVVWNTLGLILLKSGRL----QSS----ISVLSSLLA---V-DPNN 199 (470)
Q Consensus 137 ~~~~~~~~~~~---~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~----~~A----~~~~~~a~~---~-~~~~ 199 (470)
..+.++ ++.+..+|++++...| .++..|..........++. +++ ...|++++. . +|.+
T Consensus 110 -----E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s 184 (679)
T 4e6h_A 110 -----EFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKS 184 (679)
T ss_dssp -----HHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred -----HHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccc
Confidence 234455 8999999999999984 6778888877766666554 333 477888776 3 6777
Q ss_pred hHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCC-hH-HHHHHHHHHHh----------------------
Q 012143 200 CDCIGNLGIAYF---------QSGDMEQSAKCFQDLILKDQNH-PA-ALINYAALLLC---------------------- 246 (470)
Q Consensus 200 ~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~-~~-~~~~l~~~~~~---------------------- 246 (470)
..+|........ .+++.+.+...|++++.+ |.. .. .|......-..
T Consensus 185 ~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~ 263 (679)
T 4e6h_A 185 IQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHH
Confidence 777777665543 345678899999999974 432 21 11111110000
Q ss_pred ---h-------hcccccc--------------------cccchhhhhHHHhcC--------CHHHHHHHHHHHHhcCCCC
Q 012143 247 ---K-------YGSVLAG--------------------AGANTGEGACLDQAS--------AVNVAKECLLAALKADPKA 288 (470)
Q Consensus 247 ---~-------~~~~~~~--------------------~~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~p~~ 288 (470)
. ....... ...|..... +.+.. ..+.....|++++...|.+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~-fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR-WESDNKLELSDDLHKARMTYVYMQAAQHVCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH-HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH-HHHhCCccccchhhHHHHHHHHHHHHHHcCCC
Confidence 0 0000000 001111111 11111 1344668899999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHH-HHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhh-------c
Q 012143 289 AHIWANLANAYYLTGDHRSSG-KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR-------E 360 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 360 (470)
+.+|+..+..+...|+.++|. ..|++++...|.+...+...+.... .. ...+.....++.+...+. .
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee--~~---~~~e~aR~iyek~l~~l~~~~~~~~~ 417 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYE--LN---TKIPEIETTILSCIDRIHLDLAALME 417 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HT---TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--Hh---CCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999997 9999999999987665554443221 11 122222333333332211 1
Q ss_pred CCCC--------CCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc-h--hhhhHhhHHHHHHHhc-cHHHHHHHHHHHH
Q 012143 361 GDPV--------QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK-M--EECAGAGESAFLDQAS-AVNVAKECLLAAL 428 (470)
Q Consensus 361 ~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~~-~~~~A~~~~~~al 428 (470)
..+. ......+|...+....+.|..+.|...|.+++.. . ....|...+.+-...+ +++.|...|+.++
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 0000 0023468999999999999999999999998765 2 2345555555555554 4899999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 429 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 429 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+..|+++..|...+......|+.+.|...|++++...+
T Consensus 498 k~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 498 KYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998776
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.71 E-value=1e-16 Score=124.42 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=111.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------------------- 63 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ--------------------- 63 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------
Confidence 57889999999999999999999999999999999999999999999999999998887
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
..|++++|+.+|++++.++|+++.+++.+|.++...|++++|+.+|++++.++|+++....
T Consensus 64 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 64 SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 7999999999999999999999999999999999999999999999999999998876544
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.71 E-value=1e-15 Score=127.94 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
...++.+|.++...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4467889999999999999999999986 33 68899999999999999999999999999999999999999988887
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCChhHHH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA----------------HIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~la~~~~~~g~~~~A~ 309 (470)
..|++++|+..|+++++..|.+. .++..+|.++...|++++|+
T Consensus 83 ---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 83 ---------------------QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 79999999999999999888766 99999999999999999999
Q ss_pred HHHHHHHhcCCCcccHHHHHHHH
Q 012143 310 KCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 310 ~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
..|++++...|++.......+..
T Consensus 142 ~~~~~al~~~p~~~~~~~~~a~~ 164 (213)
T 1hh8_A 142 EQLALATSMKSEPRHSKIDKAME 164 (213)
T ss_dssp HHHHHHHTTCCSGGGGHHHHHHH
T ss_pred HHHHHHHHcCcccccchHHHHHH
Confidence 99999999999876655544443
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=2e-16 Score=137.86 Aligned_cols=137 Identities=9% Similarity=0.039 Sum_probs=100.9
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
.+|+++.++.++|.++...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++...+...
T Consensus 33 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 112 (281)
T 2c2l_A 33 RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112 (281)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH
Confidence 36677888889999999999999999999999999999999999999999999999999999999998888664322211
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
..... ...++..+........|.++.+...++.+. .|++++|++.++++++.+|
T Consensus 113 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p 166 (281)
T 2c2l_A 113 IPSAL------------------------RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHE 166 (281)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTS
T ss_pred HHHHH------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhcccc
Confidence 11111 122233333344456677777777777654 6888888888888888888
Q ss_pred Ccc
Q 012143 321 NCM 323 (470)
Q Consensus 321 ~~~ 323 (470)
++.
T Consensus 167 ~~~ 169 (281)
T 2c2l_A 167 DDG 169 (281)
T ss_dssp CHH
T ss_pred chh
Confidence 754
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.5e-16 Score=118.07 Aligned_cols=118 Identities=18% Similarity=0.089 Sum_probs=98.8
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|..+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45567788888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHH
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYL 301 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~ 301 (470)
++. ..|++++|+..|+++++++ |++..++..++.+...
T Consensus 81 ~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQI---------------------AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHH---------------------HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHH---------------------HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 776 6888888888888888888 8888888777776544
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.70 E-value=2.1e-16 Score=127.91 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=119.0
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHcCCH--HH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA-YFQSGDM--EQ 218 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~--~~ 218 (470)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
|+..+++++..+|+++.++..+|.++. ..|++++|+..|+++++.+|+++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAF---------------------MQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999999999999999999988887 799999999999999999998765443
No 129
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.70 E-value=3.1e-16 Score=118.77 Aligned_cols=117 Identities=13% Similarity=0.189 Sum_probs=99.2
Q ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
+.+.++..+|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++...+..++.+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999887776666666
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
+.. +|.++...|++++|+++|++++...|+ +.....+
T Consensus 86 ~~~--------------lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 86 MSR--------------AGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHH--------------HHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHH--------------HHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 553 566777788888888888888887775 4444333
No 130
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.68 E-value=1.4e-14 Score=124.28 Aligned_cols=211 Identities=8% Similarity=-0.028 Sum_probs=152.2
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCCh-hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNA-HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 129 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (470)
.+..|+|..++.... +..|.+. ...+.+.++|+.+|++.... .+. |.. ..... ++.
T Consensus 23 ~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~-------~~~-~a~~~---la~ 79 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTS-------KLG-KVLDL---YVQ 79 (310)
T ss_dssp HHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSS-------TTH-HHHHH---HHH
T ss_pred HHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC---------CCC-------HHH-HHHHH---HHH
Confidence 456778887777443 3455543 46677788899999987421 011 110 00011 110
Q ss_pred cccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--CChHHHHHHH
Q 012143 130 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--NNCDCIGNLG 207 (470)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la 207 (470)
+.. ..|+..+++.+...+....++..+|.++...|++++|+.++.+.+..+| .+.+++..++
T Consensus 80 ------------~~~----~~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~v 143 (310)
T 3mv2_B 80 ------------FLD----TKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAI 143 (310)
T ss_dssp ------------HHT----TTCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHH
T ss_pred ------------Hhc----ccHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHH
Confidence 111 1278889988887666677778999999999999999999999999987 8899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQN----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
.++..+|+.+.|.+.++++.+.+|+ +......++..+.. +....+++.+|..+|+++..
T Consensus 144 qi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~-----------------l~~g~~~~q~A~~~f~El~~ 206 (310)
T 3mv2_B 144 EVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIK-----------------FATNKETATSNFYYYEELSQ 206 (310)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-----------------HHHTCSTTTHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHH-----------------HHhCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999883 23344455444321 11123489999999999998
Q ss_pred cCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 284 ADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 284 ~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
..|+ .+..+++ ++..+|++++|...++.+++..|
T Consensus 207 ~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 207 TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcc
Confidence 8887 3334444 89999999999999998887743
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.2e-16 Score=152.13 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=175.6
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCC
Q 012143 57 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 136 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (470)
.++|...+.+++..+|++..+|+.++.++...|+..... . +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~----~-~---------------------------------- 85 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPE----E-S---------------------------------- 85 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHH----H-H----------------------------------
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchh----h-h----------------------------------
Confidence 467899999999999999999999999998876532110 0 0
Q ss_pred CccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC--ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC
Q 012143 137 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 214 (470)
Q Consensus 137 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 214 (470)
...+++++..+++++..+|++..+|..++.++...| +++++++.+.++++.+|.+..+|...+.+....|
T Consensus 86 --------~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~ 157 (567)
T 1dce_A 86 --------AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred --------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence 011478888999999999999999999999999999 6799999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 215 -DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 215 -~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
.++++++++.++++.+|.+..+|...+.++........+... +. ...+.++++++++.+++.++|++..+|+
T Consensus 158 ~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~-----~~--~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 158 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ-----GR--LPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC-----CS--SCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred CChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc-----cc--ccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999999999999999999999999998743211000000 00 0125689999999999999999999999
Q ss_pred HHHHHHHHcCChhH------------HHHHHHHHHhcCCCc
Q 012143 294 NLANAYYLTGDHRS------------SGKCLEKAAKLEPNC 322 (470)
Q Consensus 294 ~la~~~~~~g~~~~------------A~~~~~~a~~~~p~~ 322 (470)
.++.++...+++++ |+.+|.+++.++|..
T Consensus 231 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 99999999998776 666678888777763
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.68 E-value=1e-15 Score=123.83 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=119.0
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHhhhcccccc
Q 012143 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL-LLCKYGSVLAG 254 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~~~~~~~~~~~ 254 (470)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.+ +.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~--------- 90 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY--------- 90 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH---------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------
Confidence 45678999999999999999999999999999999999999999999999999999999999999988 54
Q ss_pred cccchhhhhHHHhcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 255 AGANTGEGACLDQASAV--NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
..|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++.....
T Consensus 91 ------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 91 ------------QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp ------------HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred ------------hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 68898 99999999999999999999999999999999999999999999999999876543
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.68 E-value=1.7e-16 Score=130.94 Aligned_cols=153 Identities=15% Similarity=0.089 Sum_probs=128.8
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh----------------HHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC----------------DCIGNLG 207 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~la 207 (470)
..|+++++...+.......+..+..+..+|..++..|++++|+..|++++...|.++ .++..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 456678888888777777777888999999999999999999999999999999887 8999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++..+|++++|+..+++++..+|.+..+++.+|.++. ..|++++|+.+|+++++++|+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM---------------------YFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999988887 799999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHH-HHHHHHHh
Q 012143 288 AAHIWANLANAYYLTGDHRSSG-KCLEKAAK 317 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~ 317 (470)
+..++..++.++...++..++. ..|.+.+.
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999888887 45555544
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.68 E-value=2.7e-15 Score=119.84 Aligned_cols=134 Identities=14% Similarity=0.075 Sum_probs=123.1
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHcCChhHHHHHHHHHHhcC
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN--AYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
. ..|++++|+.+|+++++.+|++..++..++. .+...|++++|+..+.++....
T Consensus 92 ~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 92 M---------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 7 7999999999999999999999988855554 4888999999999999876543
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.67 E-value=1.9e-15 Score=115.29 Aligned_cols=126 Identities=18% Similarity=0.150 Sum_probs=117.7
Q ss_pred hcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 160 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 160 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
..+|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 306 (470)
+|.++. ..|++++|+.+|+++++..|+++.++..++.++...|+++
T Consensus 86 ~~~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 86 MGLALS---------------------SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHH---------------------HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888877 7999999999999999999999999999999999998863
No 136
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.67 E-value=6.8e-15 Score=112.87 Aligned_cols=115 Identities=25% Similarity=0.439 Sum_probs=83.2
Q ss_pred HHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 152 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 100 (136)
T 2fo7_A 21 IEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100 (136)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 33333333334555667777777777778888888888887777777777777778888788888888888888777777
Q ss_pred CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.+...+..++.++. ..|++++|+.++++++..+|+
T Consensus 101 ~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 101 RSAEAWYNLGNAYY---------------------KQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHHHSTT
T ss_pred CChHHHHHHHHHHH---------------------HHccHHHHHHHHHHHHccCCC
Confidence 77777776666665 577788888888777777765
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-15 Score=115.49 Aligned_cols=123 Identities=12% Similarity=0.110 Sum_probs=114.5
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
..|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
|.++. ..|++++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus 91 a~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALE---------------------AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHH---------------------HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88887 69999999999999999999999999999999988774
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.67 E-value=6.9e-15 Score=129.36 Aligned_cols=182 Identities=10% Similarity=-0.027 Sum_probs=130.2
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
|.....+...+..+...|++++|++.+++++...|............+ .+|.++...|++++|+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~A~~ 136 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQY---------------YVAAYVLKKVDYEYCIL 136 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH---------------HHHHHHHTSSCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHH---------------HHHHHHhcCCCHHHHHH
Confidence 344556677788888899999999999998888776544322111111 14556667889999999
Q ss_pred HHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHhhhccCchHHh
Q 012143 277 CLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKL---EPNCMSTRYAVAVSRIKDAERSQEPTEQL 347 (470)
Q Consensus 277 ~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (470)
++++++...+.. ..++..+|.+|...|++++|+.+|++++.. .|++...
T Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~---------------------- 194 (293)
T 2qfc_A 137 ELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF---------------------- 194 (293)
T ss_dssp HHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH----------------------
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc----------------------
Confidence 999998765543 568899999999999999999999999954 3332100
Q ss_pred hhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHH
Q 012143 348 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAA 427 (470)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 427 (470)
...+++++|.+|...|++++|+.+++++
T Consensus 195 ----------------------------------------------------~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 195 ----------------------------------------------------DVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------------------------------------------hHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 0023445555666777777777777777
Q ss_pred HhcCCC------cHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhhcc
Q 012143 428 LKADPK------AAHIWANLANAYYLTGDHRSS-GKCLEKVLMVYCS 467 (470)
Q Consensus 428 l~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~ 467 (470)
+++.++ .+.+++++|.+|..+|++++| ..+|++++.+...
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 765432 267888999999999999999 7778988887754
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.66 E-value=2e-15 Score=120.31 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.++..++.+|.++...|++++|+.+|+++++++|+++.++..+|.++..+|++++|+..|++++.++|++..+++.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555554444444444
Q ss_pred HH
Q 012143 244 LL 245 (470)
Q Consensus 244 ~~ 245 (470)
+.
T Consensus 89 ~~ 90 (164)
T 3sz7_A 89 RF 90 (164)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=3.2e-15 Score=142.39 Aligned_cols=162 Identities=12% Similarity=0.066 Sum_probs=153.9
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC----------hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC--CH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--DM 216 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~ 216 (470)
++|+..+.+++..+|++..+|..++.++...|+ +++++..++++++.+|++..+|...+.++...| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 789999999999999999999999999999998 999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS-AVNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
+++++.+.++++.+|.+..+|...+.++. ..| .++++++++.++++.+|.+..+|..+
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~---------------------~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAA---------------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHH---------------------HcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 99999999999999999999999998887 567 89999999999999999999999999
Q ss_pred HHHHHHc--------------CChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 296 ANAYYLT--------------GDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 296 a~~~~~~--------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
+.++... +.++++++++.+++..+|++..+|+.+..
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ 234 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW 234 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 9999885 56799999999999999999999997765
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.65 E-value=3.8e-15 Score=118.73 Aligned_cols=119 Identities=20% Similarity=0.195 Sum_probs=110.6
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
++.++..++.+|.++...|++++|+..|++++.++|.++.++..+|.++. ..|++++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---------------------~~g~~~~A~ 65 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS---------------------ASGQHEKAA 65 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 45567899999999999999999999999999999999999999998887 799999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q 012143 276 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 335 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 335 (470)
.+|+++++++|+++.+++.+|.++..+|++++|+.+|+++++++|++...++..++....
T Consensus 66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988777665443
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.1e-15 Score=113.42 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
|..+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~---------------------~~~~~~~A~~ 59 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA---------------------KLMSFPEAIA 59 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HhcCHHHHHH
Confidence 4456789999999999999999999999999999999999999998887 7999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC------CCcccHHHHHH
Q 012143 277 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE------PNCMSTRYAVA 330 (470)
Q Consensus 277 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~l~ 330 (470)
.|+++++++|+++.++..+|.++...|++++|+..|+++++++ |++...+..+.
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 77666555443
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.65 E-value=2.3e-16 Score=147.33 Aligned_cols=153 Identities=12% Similarity=0.183 Sum_probs=137.2
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---------------hHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLG 207 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la 207 (470)
...+++++|+..++.++...|..+..+..+|.+++..|+|++|+..|+++++++|.+ ..++.++|
T Consensus 245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999999999998 68999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++..+|++++|+..|++++.++|++..+++.+|.++. ..|++++|+..|+++++++|+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~---------------------~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL---------------------LMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998887 799999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHH-HHHHHH
Q 012143 288 AAHIWANLANAYYLTGDHRSSGK-CLEKAA 316 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~-~~~~a~ 316 (470)
+..++..++.++...|++++|.. .|++++
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 344444
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.64 E-value=1.8e-14 Score=120.29 Aligned_cols=141 Identities=13% Similarity=0.185 Sum_probs=121.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+...|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.
T Consensus 16 ~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 92 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 92 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHH
Confidence 346688899999999996 33 678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCh----------------HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 222 CFQDLILKDQNHP----------------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 222 ~~~~~l~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
.|++++...|.+. .++..+|.++. ..|++++|+..|+++++..
T Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA---------------------KKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHcC
Confidence 9999999888776 77777777766 7999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 286 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
|++.. +..+.|+..+.+....
T Consensus 152 p~~~~------------~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 152 SEPRH------------SKIDKAMECVWKQKLY 172 (213)
T ss_dssp CSGGG------------GHHHHHHHHHHTTCCC
T ss_pred ccccc------------chHHHHHHHHHhcccc
Confidence 98632 3455566555544333
No 145
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.64 E-value=3e-16 Score=146.54 Aligned_cols=181 Identities=17% Similarity=0.142 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHH----HHhcCCCCcchhhhcccch-----------hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHH
Q 012143 20 KCRSRISSKMDS----ALEFGVDADGDQSGLGTSS-----------SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLM 84 (470)
Q Consensus 20 ~~~~a~~~~~~~----~l~~~p~~~~~~~~~~~~~-----------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 84 (470)
.++.++ ..+.+ ++.++|+. +|...|... ....+++++|+..++.++...|..+.++..+|.+
T Consensus 201 ~~e~al-~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~ 277 (457)
T 1kt0_A 201 GIDKAL-EKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTV 277 (457)
T ss_dssp HHHHHH-TTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHH
Confidence 556666 66666 77778864 555555430 2356788899999998888899999999999999
Q ss_pred HHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc
Q 012143 85 YQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR 164 (470)
Q Consensus 85 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 164 (470)
++..|++++|+..|++++++.|..... .+ +. .....+.
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~---------------------------------~~--~~-------~~~~~~~ 315 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGL---------------------------------SE--KE-------SKASESF 315 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSC---------------------------------CH--HH-------HHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccC---------------------------------Ch--HH-------HHHHHHH
Confidence 999999999999999999998764210 00 11 1123345
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
...++.++|.++..+|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred H
Q 012143 245 L 245 (470)
Q Consensus 245 ~ 245 (470)
.
T Consensus 396 ~ 396 (457)
T 1kt0_A 396 K 396 (457)
T ss_dssp H
T ss_pred H
Confidence 7
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.63 E-value=1.1e-14 Score=128.06 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCh---
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLI---LKDQNHP--- 234 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~--- 234 (470)
..++.+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.+|++++ +..|++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 345678999999999999999999999875543 4589999999999999999999999999 4456543
Q ss_pred -HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhH
Q 012143 235 -AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRS 307 (470)
Q Consensus 235 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~ 307 (470)
.++.++|.++ ...|++++|+.++++++.+.++ ...++.++|.++..+|++++
T Consensus 196 ~~~~~nlg~~y---------------------~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 254 (293)
T 2qfc_A 196 VKVRYNHAKAL---------------------YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HHHHHHHHHHH---------------------HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhHHHHH---------------------HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHH
Confidence 3445555544 4899999999999999987543 27889999999999999999
Q ss_pred H-HHHHHHHHhcCC
Q 012143 308 S-GKCLEKAAKLEP 320 (470)
Q Consensus 308 A-~~~~~~a~~~~p 320 (470)
| ..+|++++.+..
T Consensus 255 Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 255 EIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 9 888999987653
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.62 E-value=2.7e-14 Score=107.78 Aligned_cols=121 Identities=31% Similarity=0.445 Sum_probs=105.3
Q ss_pred Cccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 162 DTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 162 ~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
+|.. +.+++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4444 678889999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
+.++. ..|++++|+.++++++..+|+++.++..++.++...|
T Consensus 84 a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYY---------------------KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHH---------------------HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 87776 6889999999999999999999999999998887654
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.62 E-value=2.9e-14 Score=125.40 Aligned_cols=180 Identities=10% Similarity=0.000 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
.+...+..+...|++++|+..+++++...+..+.... ....+. .+|.++...+++++|+.+|+++
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~-~~~~~~--------------~l~~~~~~~~~~~~Ai~~~~~a 141 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ-FLQWQY--------------YVAAYVLKKVDYEYCILELKKL 141 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH-HHHHHH--------------HHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH-HHHHHH--------------HHHHHHHcccCHHHHHHHHHHH
Confidence 3445577788899999999999999987776665421 111111 1355556788999999999999
Q ss_pred HhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHH
Q 012143 282 LKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 355 (470)
Q Consensus 282 ~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (470)
+...+.. ..++.++|.+|...|++++|+.+|+++++.....+...
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------- 192 (293)
T 3u3w_A 142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE----------------------------- 192 (293)
T ss_dssp HHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH-----------------------------
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch-----------------------------
Confidence 9865442 34799999999999999999999999986432210000
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc-
Q 012143 356 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA- 434 (470)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~- 434 (470)
+....+++++|.+|...|++++|+.++++++++.+..
T Consensus 193 ------------------------------------------~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 193 ------------------------------------------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 0112345566667777788888888888888765433
Q ss_pred -----HHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhhcc
Q 012143 435 -----AHIWANLANAYYLTGD-HRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 435 -----~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 467 (470)
+.+++.+|.+|..+|+ +++|+.+|++|+++...
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 7899999999999995 69999999999998754
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.62 E-value=7.5e-15 Score=113.13 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=79.0
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+|.++..++.+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++.++|+++.++..+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45566667777777777777777777777777777777777777777777777777777777777777777666666666
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHH
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AAHIWANLANAYY 300 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~ 300 (470)
.++. ..|++++|+..|++++...|+ +..+...+..+..
T Consensus 85 ~~~~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQL---------------------EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHH---------------------HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 6665 566677777777777666665 4555555554443
No 150
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.62 E-value=6e-15 Score=129.76 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=127.8
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchH------HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh------HHHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAV------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIA 209 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~ 209 (470)
++..|++++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++...+... .++..+|.+
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 35678899999999999987776554 334589999999999999999999999654432 379999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC---CC----hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 210 YFQSGDMEQSAKCFQDLILKDQ---NH----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 210 ~~~~g~~~~A~~~~~~~l~~~p---~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
|..+|++++|+.+|++++.... .+ ..++.++ |.++...|++++|+.++++++
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nl---------------------g~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH---------------------AKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH---------------------HHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999995422 22 2233444 455558999999999999999
Q ss_pred hcCCCC------HHHHHHHHHHHHHcCC-hhHHHHHHHHHHhcC
Q 012143 283 KADPKA------AHIWANLANAYYLTGD-HRSSGKCLEKAAKLE 319 (470)
Q Consensus 283 ~~~p~~------~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 319 (470)
++.+.. +.++..+|.++..+|+ +++|+.+|++++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 876443 7899999999999995 699999999999764
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.61 E-value=1.9e-14 Score=114.93 Aligned_cols=131 Identities=14% Similarity=-0.009 Sum_probs=112.5
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhh
Q 012143 260 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAER 339 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 339 (470)
.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|++..++
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------- 84 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY------------- 84 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH-------------
Confidence 3456666899999999999999999999999999999999999999999999999999998854322
Q ss_pred ccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHH
Q 012143 340 SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNV 419 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 419 (470)
+.+|.++...|++++
T Consensus 85 -----------------------------------------------------------------~~~a~~~~~~~~~~~ 99 (166)
T 1a17_A 85 -----------------------------------------------------------------YRRAASNMALGKFRA 99 (166)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHTTCHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHhccHHH
Confidence 334447778888999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCChHHHHHHHHHHHHhhccC
Q 012143 420 AKECLLAALKADPKAAHIWANLANA--YYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 420 A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|+.+|+++++.+|+++.++..++.+ +...|++++|+..++++.+++++.
T Consensus 100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (166)
T 1a17_A 100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhccc
Confidence 9999999999999999888555555 888999999999999999887654
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.61 E-value=2e-15 Score=115.41 Aligned_cols=112 Identities=9% Similarity=-0.013 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-------NCD-----CIGNLGIAYFQSGDMEQSAKCFQDLILK---- 229 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 229 (470)
...+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999999 443 9999999999999999999999999999
Q ss_pred ---CCCChHHH----HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 230 ---DQNHPAAL----INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 230 ---~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
+|++..+| +++|.++. ..|++++|+..|+++++++|++..+...+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~---------------------~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALD---------------------GLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999 99888887 79999999999999999999876555444433
No 153
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.60 E-value=8.2e-15 Score=109.73 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~- 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT- 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
..|++++|+..|+++++.+|++..
T Consensus 97 --------------------~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 --------------------NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp --------------------HHHHHHHHHHHHHHHHC-------
T ss_pred --------------------HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 689999999999999999987643
No 154
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.60 E-value=7.5e-15 Score=112.21 Aligned_cols=107 Identities=12% Similarity=0.044 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------ChH-----HHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN-------HPA-----ALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
...+...|..++..|++++|+..|+++++++|+ +.. +|.++|.++. .
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~---------------------~ 69 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA---------------------G 69 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH---------------------H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH---------------------H
Confidence 467899999999999999999999999999999 333 5556555555 8
Q ss_pred cCCHHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 268 ASAVNVAKECLLAALKA-------DPKAAHIW----ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
.|++++|+.+|++++++ +|+++.+| +++|.++..+|++++|+..|+++++++|++.....
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999999999999 99999999 99999999999999999999999999999875433
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.60 E-value=1.1e-14 Score=108.97 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++. ..|++++|+..|++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA---------------------ENEKDGLAIIALNH 76 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999888 79999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 281 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 281 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
+++++|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 77 al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999999999999999999999864
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=6.8e-15 Score=111.30 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
...++..+|.+++..|++++|+..|+++++++|+++.++.++|.++. ..|++++|+..|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~---------------------~~~~~~~A~~~~ 65 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF---------------------EEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH---------------------HhhhHHHHHHHH
Confidence 45678899999999999999999999999999999999999998888 799999999999
Q ss_pred HHHHhcCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 279 LAALKADPKA-------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 279 ~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
+++++++|++ ..++..+|.++..+|++++|+.+|++++...|+
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 9999998875 358899999999999999999999999998886
No 157
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.59 E-value=1.6e-13 Score=117.66 Aligned_cols=243 Identities=9% Similarity=0.012 Sum_probs=170.5
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
+=.|+|..++....+.-..++ ....+.+.++|..+|++... .. .+....+...++..+. ++ |+..
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~--~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~---a~~~ 88 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTD--NTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK---NIEE 88 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCC--HHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT---CCHH
T ss_pred HHhhHHHHHHHHHHhcCccch--HHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc---HHHH
Confidence 346788999886554322222 24556677889999998752 11 2222234445554442 32 8999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYY 300 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~ 300 (470)
+++.+...+.....+..+|.++. ..|++++|++++.+.+..+| ++.+++..++.++.
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~---------------------~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQA---------------------ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 99998876666666667776666 79999999999999999987 78999999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCC----cccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHH
Q 012143 301 LTGDHRSSGKCLEKAAKLEPN----CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 376 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 376 (470)
.+|+.+.|.+.++++.+.+|+ +.... ....-+
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l--------------------------------------------~~Laea 183 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMI--------------------------------------------LNLAES 183 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHHHHH--------------------------------------------HHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCccccccchHHH--------------------------------------------HHHHHH
Confidence 999999999999999999883 11111 112222
Q ss_pred HHHhccc--cHHHHHHHHHHHhcchhh--hhHhhHHHHHHHhccHHHHHHHHHHHHhc----------CCCcHHHHHHHH
Q 012143 377 AVQKTHH--EVAAAFETEENELSKMEE--CAGAGESAFLDQASAVNVAKECLLAALKA----------DPKAAHIWANLA 442 (470)
Q Consensus 377 ~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la 442 (470)
++....| ++.+|+..|++.....+. .....+. ++.++|++++|...++.+++. +|++++++.+++
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i 262 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQI 262 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHH
Confidence 2233333 788888888886554432 2222222 788888888888888877766 477888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 443 NAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
.+...+|+ +|.++++++.+..|+.
T Consensus 263 ~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 263 TLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 88888887 7888888888877653
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.59 E-value=8.1e-14 Score=103.96 Aligned_cols=114 Identities=19% Similarity=0.171 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35667778888888888888888888888888888888888888888888888888888888888888777777777766
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
. ..|++++|+.+++++++.+|+++.++..++.+.
T Consensus 83 ~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 E---------------------FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred H---------------------HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 6 577888888888888888888777777777654
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.59 E-value=1.3e-14 Score=115.32 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhc------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAV------------------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
.+..+..+|..++..|+|++|+..|.+++.. +|.+..++.++|.++..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567888999999999999999999999988 4455566667777777777777777777777
Q ss_pred HhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHc
Q 012143 227 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-HIWANLANAYYLT 302 (470)
Q Consensus 227 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~ 302 (470)
+.++|+++.+++.+|.++. ..|++++|+..|++++.++|+++ .+...++.+....
T Consensus 90 l~~~p~~~~a~~~~g~~~~---------------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARI---------------------AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHH---------------------HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 7767766666666666665 56666666666666666666666 4455555554443
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.59 E-value=5.2e-15 Score=121.96 Aligned_cols=146 Identities=14% Similarity=0.047 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh------------
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP------------ 234 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------------ 234 (470)
......+......|++++|.+.+.......+.....+..+|.+++..|++++|+..|++++...|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 34445566777788888888888877777777788999999999999999999999999999999887
Q ss_pred ----HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 012143 235 ----AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 235 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 310 (470)
.++..+|.++. ..|++++|+.++++++..+|+++.+++.+|.++..+|++++|+.
T Consensus 85 ~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 85 NIEISCNLNLATCYN---------------------KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp HHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH
Confidence 55555555555 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHH
Q 012143 311 CLEKAAKLEPNCMSTRYAVAVSR 333 (470)
Q Consensus 311 ~~~~a~~~~p~~~~~~~~l~~~~ 333 (470)
+|++++.++|++..++..++...
T Consensus 144 ~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 144 NLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHH
Confidence 99999999999988877766543
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.58 E-value=2.5e-14 Score=118.37 Aligned_cols=160 Identities=11% Similarity=0.099 Sum_probs=126.5
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHcCCH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~ 216 (470)
+..|++++|...++......+..+.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 56789999999665555434467889999999999999999999999999983 445567899999999999999
Q ss_pred HHHHHHHHHHHhh---CCCCh----HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC--
Q 012143 217 EQSAKCFQDLILK---DQNHP----AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-- 287 (470)
Q Consensus 217 ~~A~~~~~~~l~~---~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-- 287 (470)
++|+..+++++.+ .++++ .++..+| .++...|++++|+.++++++...+.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg---------------------~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVA---------------------TVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH---------------------HHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH---------------------HHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999987 34332 2344444 4445899999999999999976332
Q ss_pred ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 288 ----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 288 ----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
...++..+|.++...|++++|+.++++++.+.....
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 234568999999999999999999999998765443
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.58 E-value=4.1e-14 Score=107.78 Aligned_cols=90 Identities=13% Similarity=0.210 Sum_probs=74.4
Q ss_pred HHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 012143 156 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 156 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 235 (470)
++++...|+++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|++++..+|++..
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 36 GKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 33333356667788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHH
Q 012143 236 ALINYAALLL 245 (470)
Q Consensus 236 ~~~~l~~~~~ 245 (470)
++..++.++.
T Consensus 116 ~~~~l~~~~~ 125 (131)
T 2vyi_A 116 YKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887776
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.1e-14 Score=109.48 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=107.2
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 235 (470)
....|.+...++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|+++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 34567788899999999999999999999999999999987 888999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012143 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300 (470)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 300 (470)
++..+|.++. ..|++++|+.+|++++..+|++..++..++.+..
T Consensus 101 ~~~~~a~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 101 ALYRRSQALE---------------------KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888888777 6899999999999999999999888888877653
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.57 E-value=1.1e-15 Score=143.12 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.++..+|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444555556666666666666666666666666666666666666666666666666666666666666666655555
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCChhHHHHHHH----------
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA--YYLTGDHRSSGKCLE---------- 313 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~---------- 313 (470)
..|++++|+..|+++++++|++..++..++.+ +...|++++|+..++
T Consensus 86 ---------------------~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 86 ---------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp ---------------------HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred ---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence 46666666666666666666666666666666 666677777777777
Q ss_pred -HHHhcCCCccc
Q 012143 314 -KAAKLEPNCMS 324 (470)
Q Consensus 314 -~a~~~~p~~~~ 324 (470)
+++...|+...
T Consensus 145 ~~al~~~~~~~~ 156 (477)
T 1wao_1 145 IESMTIEDEYSG 156 (477)
T ss_dssp TSSCCCCTTCCS
T ss_pred hhhccccccccc
Confidence 66666665433
No 165
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.57 E-value=9.4e-14 Score=106.16 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=108.8
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
.|.++..+..+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~ 70 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT---------------------KLLEFQLAL 70 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT---------------------TTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---------------------HhccHHHHH
Confidence 45678899999999999999999999999999999999999998888876 799999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 012143 276 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 333 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 333 (470)
.+++++++.+|+++.++..+|.++...|++++|+.+|++++..+|.+..++..++...
T Consensus 71 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887776543
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.57 E-value=8.3e-14 Score=107.18 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=100.9
Q ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHH
Q 012143 194 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 273 (470)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (470)
..+|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++. ..|++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~---------------------~~~~~~~ 61 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQ 61 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH---------------------HhcCHHH
Confidence 3567889999999999999999999999999999999999999999998887 7999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 274 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+
T Consensus 62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 62 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999999999999999999999999999988
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.56 E-value=2.9e-15 Score=134.12 Aligned_cols=149 Identities=12% Similarity=0.097 Sum_probs=97.8
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh-----------------HHHHHHHHHHHHcCCHH
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----------------DCIGNLGIAYFQSGDME 217 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~la~~~~~~g~~~ 217 (470)
+...+...+..+..+..+|..++..|++++|+..|++++...|++. .++.++|.++..+|+++
T Consensus 168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 3333444566678899999999999999999999999999999876 48999999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 218 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
+|+..+++++.++|++..+++.+|.++. ..|++++|+..|+++++++|++..++..++.
T Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~---------------------~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 248 EAIGHCNIVLTEEEKNPKALFRRGKAKA---------------------ELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306 (338)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHTTC--------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999999999999998887 7999999999999999999999999999999
Q ss_pred H-HHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 298 A-YYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 298 ~-~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
+ ....+..+++...|.+++...|+++.
T Consensus 307 l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 8 45567788899999999999998653
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.56 E-value=3.4e-14 Score=133.13 Aligned_cols=128 Identities=8% Similarity=0.125 Sum_probs=113.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.+|..+|++++|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH-----------HHHhcCCCC
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL-----------AALKADPKA 288 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-----------~~~~~~p~~ 288 (470)
.|+++++++|++..++..++.+.. +...|++++|++.++ +++.+.|+.
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~~~-------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQECNK-------------------IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHHHH-------------------HHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-------------------HHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999988887722 126789999999999 777777763
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.9e-13 Score=127.46 Aligned_cols=233 Identities=12% Similarity=0.119 Sum_probs=171.8
Q ss_pred CcccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHH
Q 012143 1 MSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFL 80 (470)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 80 (470)
||...+. -.+++.+.+.|++.+|+ ..+.++++..|+........+.. ....+..+ .++..
T Consensus 1 ~s~p~~~-l~~a~~l~~~~~y~eA~-~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~al~~ 60 (434)
T 4b4t_Q 1 MSLPGSK-LEEARRLVNEKQYNEAE-QVYLSLLDKDSSQSSAAAGASVD-DKRRNEQE-----------------TSILE 60 (434)
T ss_dssp CCSTTHH-HHHHHHHHHHTCHHHHH-HHHHHHHHSCCCSSSBSSSSSBC-SHHHHHHH-----------------HHHHH
T ss_pred CCChHHH-HHHHHHHHHCCCHHHHH-HHHHHHHhhCcccchhHHHHHHH-HHHhhhHH-----------------HHHHH
Confidence 4444443 34678889999999999 99999999999888777776666 33333222 24578
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
+|.+|...|++++|++++.+++...+.... ......+...++.++ ...|++++|+..+++++.
T Consensus 61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~-----------~~~~~~~~a~~~~~~~~~ 123 (434)
T 4b4t_Q 61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAK------SKTVKVLKTLIEKFE-----------QVPDSLDDQIFVCEKSIE 123 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHTSCH------HHHHHHHHHHHHHHC-----------SCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988654321 111122233333333 345677999999999886
Q ss_pred cCc------cchHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 161 SDT------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 161 ~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
..+ ....++..+|.++...|+|.+|+..+++++.. .|....++..+|.+|...|++++|...+++++.
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 124 FAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 533 33668899999999999999999999998875 233467899999999999999999999999998
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 284 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 284 (470)
..+.........+.++.. .|.++...|++.+|..+|.+++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~--------------~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 204 AANSIYCPTQTVAELDLM--------------SGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHSCCCHHHHHHHHHH--------------HHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HhhcCCCchHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 755433322333333332 356666899999999999999865
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.55 E-value=1.9e-13 Score=103.91 Aligned_cols=115 Identities=16% Similarity=0.240 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINY 240 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 240 (470)
.+++.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3456677777777777777777777777777766 577777777777777777777777777777776 5556666
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
|.++. ..|++++|+..|++++...|+++.+...+..+....
T Consensus 83 a~~~~---------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 83 GLSQY---------------------GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHH---------------------HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 65555 567777777777777777777666655555444433
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.55 E-value=6.4e-14 Score=103.45 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=59.0
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
+|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~ 60 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY---------------------NLERYEEAV 60 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 34455555555555555555555555555555555555555555554444 455555555
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHHc-CChhHHHHHHHHHHhcCCCc
Q 012143 276 ECLLAALKADPK--AAHIWANLANAYYLT-GDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 276 ~~~~~~~~~~p~--~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~ 322 (470)
.+++++++..|. +..++..+|.++... |++++|+.++++++...|.+
T Consensus 61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 555555555555 555555555555555 56666666666555555543
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=5.8e-14 Score=103.71 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=100.1
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALIN 239 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~ 239 (470)
+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999 9999888
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhc-CCHHHHHHHHHHHHhcCCCCH
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~ 289 (470)
++.++. .. |++++|++++++++...|.++
T Consensus 82 l~~~~~---------------------~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALR---------------------YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHT---------------------TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHH---------------------HHhCCHHHHHHHHHHHhhcccCCC
Confidence 888877 79 999999999999999998753
No 173
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.54 E-value=1.7e-14 Score=109.90 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=90.3
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh----------HHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL----------QSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 212 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 212 (470)
-+.+.+++|+..++++++.+|+++++|.++|.++...+++ ++|+..|+++++++|++..+++++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999876 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 213 SG-----------DMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 213 ~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+| ++++|+.+|+++++++|++...+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 85 899999999999999999876554443
No 174
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=3.3e-13 Score=100.56 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=104.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
.+..++.+|.++...|++++|+..|++++..+|.++..+..+|.++. ..|++++|+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~ 61 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA---------------------KKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH---------------------hhccHHHHHHHH
Confidence 45788999999999999999999999999999999999999988887 699999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
++++...|+++.++..+|.++...|++++|+..++++++.+|+++..+..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877766543
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.54 E-value=1.3e-14 Score=129.88 Aligned_cols=161 Identities=15% Similarity=0.064 Sum_probs=101.1
Q ss_pred hCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHH
Q 012143 70 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 149 (470)
Q Consensus 70 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
..|..+..+..+|..++..|++++|+..|++++...|.... +...+++.
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------------------------~~~~~~~~ 222 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------------------------------FQLYGKYQ 222 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------------------------------HTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------------------------------hhhcccHH
Confidence 34556788999999999999999999999999998765310 11334556
Q ss_pred HHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 150 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
++...+. ..+++++|.++..+|++++|+.+|+++++++|++..+++.+|.++..+|++++|+..|++++++
T Consensus 223 ~~~~~l~---------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 223 DMALAVK---------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHH---------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6554432 3488999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
+|++..++..++.+... ..+..+++...|.+++...|+++.
T Consensus 294 ~p~~~~a~~~L~~l~~~--------------------~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 294 APDDKAIRRELRALAEQ--------------------EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 99999999888877543 467788899999999999887653
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.54 E-value=4.5e-14 Score=107.62 Aligned_cols=103 Identities=13% Similarity=0.144 Sum_probs=93.4
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
..+.+.+++|++.++++++.+|+++++|+.+|.++...++++.+......
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~------------------------------ 61 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM------------------------------ 61 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhH------------------------------
Confidence 56678899999999999999999999999999999999998877764321
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC-----------ChHHHHHHHHHHhhcCCCC
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-----------RLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~ 199 (470)
+++|+..|+++++++|+++.+|+++|.+|..+| ++++|+.+|+++++++|++
T Consensus 62 -----------------~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 62 -----------------IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp -----------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -----------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 389999999999999999999999999999885 8999999999999999997
Q ss_pred h
Q 012143 200 C 200 (470)
Q Consensus 200 ~ 200 (470)
.
T Consensus 125 ~ 125 (158)
T 1zu2_A 125 T 125 (158)
T ss_dssp H
T ss_pred H
Confidence 4
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.53 E-value=1.7e-13 Score=108.81 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCChHHHHHHHHHHHhhhcccccccccchhh
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILK------------------DQNHPAALINYAALLLCKYGSVLAGAGANTGE 261 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 261 (470)
...+...|..++..|++++|+..|.+++.. +|.+..++.++|.++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------- 74 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL---------------- 74 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 567899999999999999999999999998 5555566666666665
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc-cHHHHHH
Q 012143 262 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVA 330 (470)
Q Consensus 262 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~ 330 (470)
..|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|++. .....+.
T Consensus 75 -----~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 75 -----NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp -----HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred -----hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999987 4344333
No 178
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=6.1e-13 Score=100.25 Aligned_cols=116 Identities=31% Similarity=0.499 Sum_probs=105.6
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHH
Q 012143 196 DPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 274 (470)
Q Consensus 196 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 274 (470)
+|.. ..++..+|.++...|++++|+..+++++...|.+...+..++.++. ..|++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A 62 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY---------------------KQGDYDEA 62 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH---------------------HhCCHHHH
Confidence 4555 7889999999999999999999999999999999999888888877 79999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHH
Q 012143 275 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 275 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
+.++++++...|.++.++..+|.++...|++++|+.++++++..+|++..++..++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887776653
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.53 E-value=1.5e-13 Score=104.69 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=103.4
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------hH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-------PA 235 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~ 235 (470)
|..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+ ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999998876 55
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
++..+|.++. ..|++++|+.+|++++...| ++..+..++.+....+
T Consensus 81 ~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 81 AYARIGNSYF---------------------KEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 5555555555 78999999999999999888 5888888887766544
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.51 E-value=9.9e-13 Score=122.66 Aligned_cols=140 Identities=12% Similarity=-0.005 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----------------DCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
|.+....|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667788889999999999999999999887653 3588999999999999999999999998
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHc
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLT 302 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~ 302 (470)
..+.......... +. ..+|.++...|++++|+.++++++...+ ....++..+|.++...
T Consensus 84 ~~~~~~~~~~~~~-~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 84 YMMQFAKSKTVKV-LK--------------TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp HHHTSCHHHHHHH-HH--------------HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHH-HH--------------HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 7766544322111 11 1134455578999999999999887532 3467889999999999
Q ss_pred CChhHHHHHHHHHHhcCC
Q 012143 303 GDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 303 g~~~~A~~~~~~a~~~~p 320 (470)
|++++|...+++++....
T Consensus 149 g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFK 166 (434)
T ss_dssp TCHHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHH
Confidence 999999999999876543
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.3e-13 Score=104.58 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=105.7
Q ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC
Q 012143 194 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 270 (470)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (470)
..+|.+...+..+|..+...|++++|+..|++++..+|++ ...+..++.++. ..|+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~ 80 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL---------------------KLED 80 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH---------------------HTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH---------------------HHcc
Confidence 3467788999999999999999999999999999999987 677777777766 7999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 271 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 271 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
+++|+..+++++..+|+++.++..+|.++...|++++|+.+|++++..+|++...+..+.
T Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887666543
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.51 E-value=5.6e-14 Score=104.74 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=86.8
Q ss_pred cccHHHHHHHHHHhhhc---CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 145 PEELEEILSKLKESMQS---DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.|++++|+..|++++.. +|+++.++..+|.++..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57889999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHH
Q 012143 222 CFQDLILKDQNHPAALI 238 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~ 238 (470)
.+++++...|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999999987654
No 183
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=1.4e-12 Score=107.83 Aligned_cols=124 Identities=18% Similarity=0.156 Sum_probs=96.4
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHhhhc
Q 012143 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD------QNHPAALINYAALLLCKYG 249 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~~~ 249 (470)
.+..|++++|...++......+....++..+|.++...|++++|+..+++++.+. |....++..+|.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~------ 75 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV------ 75 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------
Confidence 3568999999996665555444678899999999999999999999999999843 2333344444444
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKA---DPK----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
+...|++++|+.++++++.. .++ ...++..+|.++...|++++|+.++++++...+
T Consensus 76 ---------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 76 ---------------ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp ---------------HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45899999999999999988 442 356789999999999999999999999987643
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.50 E-value=5.3e-13 Score=120.57 Aligned_cols=130 Identities=11% Similarity=0.056 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
+..+..+|..+...|++++|+..|+++++..+... ....
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------------------------------~~~~ 261 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------------------------------AAAE 261 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------------------------------HHSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------------------------------cccC
Confidence 56789999999999999999999999999754421 0111
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
.......+|.++.++.++|.++..+|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 262 ~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 262 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 33445567888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012143 235 AALINYAALLL 245 (470)
Q Consensus 235 ~~~~~l~~~~~ 245 (470)
.++..++.++.
T Consensus 342 ~~~~~l~~~~~ 352 (370)
T 1ihg_A 342 AIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888876
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.49 E-value=7.9e-14 Score=103.89 Aligned_cols=104 Identities=15% Similarity=0.216 Sum_probs=81.7
Q ss_pred HcCChHHHHHHHHHHhhc---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccc
Q 012143 178 KSGRLQSSISVLSSLLAV---DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 178 ~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (470)
.+|++++|+..|+++++. +|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------- 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY--------- 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH---------
Confidence 468888999999999988 58888889999999999999999999999999999998888888888777
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
..|++++|+..+++++...|+++.+......+....
T Consensus 73 ------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 73 ------------NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp ------------HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred ------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 688899999999999988888877655444333333
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.49 E-value=8e-13 Score=100.40 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHH
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 277 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 277 (470)
.+++.+|.++...|++++|+..|++++..+|+++ .+++.+|.++. ..|++++|+..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~ 61 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY---------------------ATRNFQLAEAQ 61 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH---------------------HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH---------------------HhccHHHHHHH
Confidence 4578899999999999999999999999999988 68888887776 79999999999
Q ss_pred HHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHH
Q 012143 278 LLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 328 (470)
Q Consensus 278 ~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (470)
|++++...|++ +.+++.+|.++...|++++|+..|++++...|++..+...
T Consensus 62 ~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 99999999999 8899999999999999999999999999999997765443
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.49 E-value=3.4e-13 Score=121.88 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhh----------------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLA----------------VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
+..+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+..+++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 56788999999999999999999999998 77778889999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 309 (470)
+|++..+++.+|.++. ..|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 303 ~p~~~~a~~~lg~~~~---------------------~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQ---------------------GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888887 6899999999999999999999999999999999988888775
Q ss_pred HH
Q 012143 310 KC 311 (470)
Q Consensus 310 ~~ 311 (470)
..
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 188
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.48 E-value=5.5e-11 Score=111.55 Aligned_cols=344 Identities=7% Similarity=-0.066 Sum_probs=204.9
Q ss_pred hhc-ChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccc
Q 012143 53 REE-KVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131 (470)
Q Consensus 53 ~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (470)
..| ++..|...|++++...|. |+++.+...|++++...|+.+ .|...+...
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~ps~~-------------LW~~Y~~f~ 57 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSYNLD-------------LWMLYIEYV 57 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCCCHH-------------HHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCCCHH-------------HHHHHHHHH
Confidence 345 488888888888888777 889999999999988655321 111111110
Q ss_pred cccCCCccccccCcccHHHHHHHHHHhhhc---CccchHHHHHHHHHHH----HcCChHHHHHHHHHHhhcCCCChHH-H
Q 012143 132 ESSGDNSLDKELEPEELEEILSKLKESMQS---DTRQAVVWNTLGLILL----KSGRLQSSISVLSSLLAVDPNNCDC-I 203 (470)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~-~ 203 (470)
...+. ..+.....|+.++.. +|.+..+|......+. .+|+.+.+...|++++...+....- |
T Consensus 58 ~~~~~----------~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw 127 (493)
T 2uy1_A 58 RKVSQ----------KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELW 127 (493)
T ss_dssp HHHC--------------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHhCc----------hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHH
Confidence 00110 124456677777763 6777788887776654 3467888899999999853333322 2
Q ss_pred HHHHHHH-------------HHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC
Q 012143 204 GNLGIAY-------------FQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 269 (470)
Q Consensus 204 ~~la~~~-------------~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (470)
......- ...+.+..|...|+.+....+. ....|..+...-.... .+. ...+
T Consensus 128 ~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~------------~~~--~~~~ 193 (493)
T 2uy1_A 128 KDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG------------MKL--GGRP 193 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT------------TCC--CHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC------------ccC--cchh
Confidence 2111111 1112334444445544443222 2223333222211000 000 0000
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhh
Q 012143 270 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSW 349 (470)
Q Consensus 270 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 349 (470)
..+.....|++++...|..+.+|...+..+...|+.++|...|++++.. |.+...+...+.. .+.. ..
T Consensus 194 ~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~--~e~~-------~~-- 261 (493)
T 2uy1_A 194 HESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV--MDEE-------AV-- 261 (493)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH--TTCT-------HH--
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh--cchh-------HH--
Confidence 1455778999999999999999999999999999999999999999999 9987655543322 1000 00
Q ss_pred hHHHHHHHhhcCC------CCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch-hhhhHhhHHHHHHHhc-cHHHHH
Q 012143 350 AGNEMASILREGD------PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-EECAGAGESAFLDQAS-AVNVAK 421 (470)
Q Consensus 350 ~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~ 421 (470)
...+........ ........+|...+....+.+..+.|...|.++..+. ....|...|..-...+ +.+.|.
T Consensus 262 -~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 -YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp -HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred -HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence 111111110000 0011234678888888878888899988888872221 2234544455545455 588999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 422 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 422 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
..|+.+++..|+.+..|...+......|+.+.|...|+++
T Consensus 341 ~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 341 NIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999988888888877777777888888888777765
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.44 E-value=8.5e-13 Score=104.65 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=113.0
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
...++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+..+++++...+......
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~- 86 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA- 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH-
Confidence 356889999999999999999999999998865432 4889999999999999999999999998765432111
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
..+.++. .+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++
T Consensus 87 ~~~~~~~--------------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 87 VEAQSCY--------------SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHH--------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1111111 2355556899999999999999977432 3567899999999999999999999
Q ss_pred HHHHhcCCC
Q 012143 313 EKAAKLEPN 321 (470)
Q Consensus 313 ~~a~~~~p~ 321 (470)
++++++...
T Consensus 153 ~~a~~~~~~ 161 (164)
T 3ro3_A 153 EKHLEISRE 161 (164)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999987554
No 190
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=2.2e-12 Score=98.09 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=99.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHH
Q 012143 198 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 277 (470)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 277 (470)
..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++. ..|++++|+.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~ 60 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF---------------------EKGDYNKCREL 60 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HhccHHHHHHH
Confidence 346789999999999999999999999999999999999998888887 79999999999
Q ss_pred HHHHHhcCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 278 LLAALKADPKA-------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 278 ~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
+++++...|.+ +.++..+|.++...|++++|+.+|++++...|+ +.....+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l 118 (131)
T 1elr_A 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 99999998877 899999999999999999999999999999984 4444433
No 191
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.42 E-value=1.6e-10 Score=108.38 Aligned_cols=366 Identities=8% Similarity=-0.099 Sum_probs=227.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhc-ChhhHHHHHHHHHHh---CCCChhHHHHHHHHHH----
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREE-KVSSLKTGLVHVARK---MPKNAHAHFLLGLMYQ---- 86 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~---- 86 (470)
.+-.|+++.+. ..|++++...| +...|...... ....+ ..+.....|+.++.. +|.++..|......+.
T Consensus 24 ~~P~~~~e~~~-~iferal~~~p-s~~LW~~Y~~f-~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~ 100 (493)
T 2uy1_A 24 LYMSKDYRSLE-SLFGRCLKKSY-NLDLWMLYIEY-VRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIED 100 (493)
T ss_dssp HHHTTCHHHHH-HHHHHHSTTCC-CHHHHHHHHHH-HHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSS
T ss_pred HCCCCCHHHHH-HHHHHHhccCC-CHHHHHHHHHH-HHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchh
Confidence 34447788887 89999999888 77778765555 44433 345677888888864 7888888888887754
Q ss_pred HhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc-c
Q 012143 87 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR-Q 165 (470)
Q Consensus 87 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~ 165 (470)
.+|+.+.+...|++++.. |..........+.......... .+-..+ .-..+.+..|...++.+....+. +
T Consensus 101 ~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~-~~~~~~-------~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 101 EQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKI-TGKKIV-------GDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccc-cHHHHH-------HHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 457788999999999984 4321111111111000000000 000000 00113345556556655544332 3
Q ss_pred hHHHHHHHHHHHHc--CC-----hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 166 AVVWNTLGLILLKS--GR-----LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 166 ~~~~~~l~~~~~~~--~~-----~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
...|......-... |- .......|++++...|..+..|...+..+...|+.++|...|++++.. |.+...+.
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~ 250 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL 250 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH
Confidence 34555544432221 11 345678999999999999999999999999999999999999999999 98877666
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCC-HHHHHHHHHHH------HhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAA------LKADPKAAHIWANLANAYYLTGDHRSSGKC 311 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 311 (470)
..+.... .++ ++.....+... ....+....+|...+....+.+..+.|...
T Consensus 251 ~y~~~~e----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i 308 (493)
T 2uy1_A 251 YYGLVMD----------------------EEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKL 308 (493)
T ss_dssp HHHHHTT----------------------CTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhhcc----------------------hhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5443311 000 01100000000 000111246677778887788889999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccc-cHHHHHH
Q 012143 312 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH-EVAAAFE 390 (470)
Q Consensus 312 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~ 390 (470)
|+++ . .|.. .. .+|...+.+....+ +.+.|..
T Consensus 309 ~~~A-~-~~~~-~~--------------------------------------------~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 309 FIEL-G-NEGV-GP--------------------------------------------HVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp HHHH-T-TSCC-CH--------------------------------------------HHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHh-h-CCCC-Ch--------------------------------------------HHHHHHHHHHHHHCCChHHHHH
Confidence 9998 3 3431 11 13333333333334 4777888
Q ss_pred HHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 391 TEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 391 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+..++. +..+..|...+......|+.+.|...|+++ +.....|......-...|+.+.+...++++++.+.
T Consensus 342 ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 342 IFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 8877665 223344566666777889999999999987 35678888888888888999999999999998664
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.38 E-value=4.7e-12 Score=100.30 Aligned_cols=141 Identities=17% Similarity=0.043 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
..++..+|.++...|++++|+.+++++++..+... +....+.++..++.++ ...|++++|+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~l~~~~-----------~~~g~~~~A~~~ 71 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG------DKAAERIAYSNLGNAY-----------IFLGEFETASEY 71 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHH-----------HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC------CchHHHHHHHHHHHHH-----------HHcCCHHHHHHH
Confidence 45788899999999999999999999998876532 2222334455555554 455667999999
Q ss_pred HHHhhhcCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 155 LKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 155 ~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
+++++...+.. ..++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+..
T Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 72 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 99988765543 568889999999999999999999999987332 256789999999999999999999
Q ss_pred HHHHHhhCCC
Q 012143 223 FQDLILKDQN 232 (470)
Q Consensus 223 ~~~~l~~~p~ 232 (470)
+++++++...
T Consensus 152 ~~~a~~~~~~ 161 (164)
T 3ro3_A 152 AEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999987543
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.30 E-value=3.5e-11 Score=89.12 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=80.8
Q ss_pred HHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 150 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
+|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 012143 230 DQNH 233 (470)
Q Consensus 230 ~p~~ 233 (470)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8743
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.27 E-value=3.9e-11 Score=88.84 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhh
Q 012143 184 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 263 (470)
Q Consensus 184 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (470)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~------------------ 64 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ------------------ 64 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH------------------
Confidence 46677777777777777777777777777777777777777777777777776666666665
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 264 CLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
..|++++|+..|++++.+.|.
T Consensus 65 ---~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 65 ---GQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp ---HHTCHHHHHHHHHHHHHHHHH
T ss_pred ---HcCCHHHHHHHHHHHHHhccc
Confidence 567777777777777766553
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=6.2e-12 Score=92.54 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 233 (470)
.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++.++|++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3444455555555555555555555555555544455555555555555555555555554444444
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.7e-12 Score=93.75 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=79.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHcCC
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGD 215 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~ 215 (470)
+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++ ..++..+|.++...|+
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999999998 8899999999999998
Q ss_pred HHHHHHHHHHH
Q 012143 216 MEQSAKCFQDL 226 (470)
Q Consensus 216 ~~~A~~~~~~~ 226 (470)
++.|+..+++.
T Consensus 94 ~~~a~~~~~~~ 104 (111)
T 2l6j_A 94 VQIPVVEVDEL 104 (111)
T ss_dssp CCCCSSSSSSC
T ss_pred HhhhHhHHHHh
Confidence 88887766543
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.25 E-value=1e-10 Score=82.39 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=79.1
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|.++.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 012143 243 LLL 245 (470)
Q Consensus 243 ~~~ 245 (470)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.22 E-value=1.6e-10 Score=81.30 Aligned_cols=85 Identities=29% Similarity=0.397 Sum_probs=75.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHH
Q 012143 198 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 277 (470)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 277 (470)
.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++. ..|++++|+.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~ 65 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY---------------------KQGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HHhhHHHHHHH
Confidence 456788999999999999999999999999999999988888888877 68999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 278 LLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 278 ~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
|+++++.+|+++.++..+|.++...|
T Consensus 66 ~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 66 YQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999887765
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.20 E-value=1.4e-10 Score=83.24 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=67.4
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 233 (470)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987643
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.14 E-value=1.8e-09 Score=90.10 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=130.7
Q ss_pred hcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC---------------------ChhHHHHHHHHHHHHHhhhhccc
Q 012143 54 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG---------------------QPLKAVSSYEKAEEILLRCEADI 112 (470)
Q Consensus 54 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---------------------~~~~A~~~~~~al~~~~~~~~~~ 112 (470)
.+-+.-....++..+..+|++...+...|..|..-+ ++..|..+|.++.+..-.
T Consensus 45 ~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~r----- 119 (301)
T 3u64_A 45 AQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALS----- 119 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHH-----
Confidence 334455667788888999999887776666654321 244666777766654210
Q ss_pred chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHH-----cCC------
Q 012143 113 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-----SGR------ 181 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-----~~~------ 181 (470)
.+...+..++. .+..++..+-.+ ..-+.+|+++++++..|.+... .|.
T Consensus 120 ------aL~~~~~~~~~------------~~~~~~~~~~~~---~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~ 178 (301)
T 3u64_A 120 ------SLETAYPGFTR------------EVFSGDEQRLHK---VLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDT 178 (301)
T ss_dssp ------HHHHHSTTHHH------------HHTSSCHHHHHH---HHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHH
T ss_pred ------HHHHhCccHHH------------HHHhcchhhHHH---HHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHh
Confidence 00000111110 122332211111 2334578888888887776644 133
Q ss_pred hHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhhhccccc
Q 012143 182 LQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQS-----GDMEQSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLA 253 (470)
Q Consensus 182 ~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~~ 253 (470)
...|...++++++++|+ +..+|..+|.+|... |+.++|.++|+++++++|+. ...++.++..+..
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~------- 251 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI------- 251 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-------
Confidence 57899999999999999 677999999999995 99999999999999999975 9999998888763
Q ss_pred ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 254 GAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
..|++++|..++++++...|.
T Consensus 252 -------------~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 252 -------------PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp -------------TTTCHHHHHHHHHHHHHCCGG
T ss_pred -------------hcCCHHHHHHHHHHHHcCCCC
Confidence 369999999999999998877
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.12 E-value=2.3e-09 Score=81.82 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=104.3
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----cCCHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSA 220 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 220 (470)
.+++++|+.+|+++.+..+ +.+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4678999999999998763 4455 999999999999999999999887 689999999999999 89999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 221 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
.+|+++.+. .++.+.+.++.++..-.+ -.+++++|+.+|+++.+.. ++.+...++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g-----------------~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKG-----------------VVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCC-----------------CCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999876 688999999988872100 1789999999999999874 455555544
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.11 E-value=1e-10 Score=83.90 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCD-CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++.++|++..++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56788899999999999999999999999998 9999999999999999999999999999999887763
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.11 E-value=5e-10 Score=80.29 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=42.0
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++. ..|++++|+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~ 61 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE---------------------RLDRTDDAI 61 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HcCCHHHHH
Confidence 45666666666666666666666666666666666666666666555554 466666666
Q ss_pred HHHHHHHhcCC
Q 012143 276 ECLLAALKADP 286 (470)
Q Consensus 276 ~~~~~~~~~~p 286 (470)
..|++++++.|
T Consensus 62 ~~~~~al~l~~ 72 (100)
T 3ma5_A 62 DTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 66666665543
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.08 E-value=2.7e-10 Score=81.64 Aligned_cols=91 Identities=10% Similarity=0.040 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 204 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
+..|.++...|++++|+..|+++++.+|+++. ++..+|.++. ..|++++|+..|++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR---------------------KLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 56788888888888888888888888888888 8888877776 6888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
+.+|+++.++.. +.+.+++..|+++...+|++.
T Consensus 63 ~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 63 ELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred hcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 888888877644 566777777877777776654
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.07 E-value=6.2e-09 Score=90.95 Aligned_cols=144 Identities=11% Similarity=0.073 Sum_probs=111.1
Q ss_pred hhcCccchHHH--HHHHHHHHHcCC---hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC----HHHHHH----HHH-
Q 012143 159 MQSDTRQAVVW--NTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD----MEQSAK----CFQ- 224 (470)
Q Consensus 159 ~~~~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----~~~A~~----~~~- 224 (470)
....|.++.+| +..|..+...+. ..+|+.+|+++++++|+++.++..++.+|..... ...... .++
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34456666654 446676666554 5889999999999999999999999888863211 111111 222
Q ss_pred -HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 225 -DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 225 -~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
.++..+|.++.++..++..+. ..|++++|+..+++++.++|+ ...+..+|.++...|
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l---------------------~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G 324 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSAL---------------------VKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKG 324 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT
T ss_pred HHhcccCCcCHHHHHHHHHHHH---------------------hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC
Confidence 223567888888888877766 579999999999999999975 778899999999999
Q ss_pred ChhHHHHHHHHHHhcCCCccc
Q 012143 304 DHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~ 324 (470)
++++|++.|++++.++|....
T Consensus 325 ~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 325 MNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH
T ss_pred CHHHHHHHHHHHHhcCCCcCh
Confidence 999999999999999998753
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=6.2e-09 Score=79.41 Aligned_cols=116 Identities=11% Similarity=-0.000 Sum_probs=100.4
Q ss_pred CChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccch
Q 012143 180 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 259 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (470)
+++++|+.+|+++.+..+ +.+. +|.+|...+.+++|+.+|+++.+. .++.+++.+|.++..-.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g---------- 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY---------- 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS----------
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC----------
Confidence 468999999999998864 4444 999999999999999999999886 688999999998873100
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCC
Q 012143 260 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p 320 (470)
-.+++++|+.+|+++.+. .++.++.++|.+|.. .+++++|+.+|+++.+...
T Consensus 73 -------~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 73 -------VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp -------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -------CCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 178999999999999986 679999999999999 9999999999999998753
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.02 E-value=2.8e-08 Score=86.87 Aligned_cols=155 Identities=8% Similarity=-0.008 Sum_probs=112.2
Q ss_pred HHhcCCCCcchh--hhcccchhhh---hcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 012143 32 ALEFGVDADGDQ--SGLGTSSSSR---EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILL 106 (470)
Q Consensus 32 ~l~~~p~~~~~~--~~~~~~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 106 (470)
+....|.+..+| +..|.. +.. ...+.+|+.+|+++++.+|+++.++..++.+|...... .|
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~-~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~ 251 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHD-YLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HP 251 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHH-HHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SC
T ss_pred HhccCCCCHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CC
Confidence 334456665544 455555 443 34567888888899989998888888888888621000 00
Q ss_pred hhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHH
Q 012143 107 RCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSI 186 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 186 (470)
.+ ... ......+... ..++..+|.++.++..++..+...|++++|+
T Consensus 252 ~~------~~~---------------------------~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~ 297 (372)
T 3ly7_A 252 LD------EKQ---------------------------LAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESY 297 (372)
T ss_dssp CC------HHH---------------------------HHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred Cc------hhh---------------------------HHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHH
Confidence 00 000 0001233331 2355678999999999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 235 (470)
..+++++.++|+ ..++..+|.++...|++++|++.|.+++.++|..+.
T Consensus 298 ~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 298 QAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 999999999975 678899999999999999999999999999998764
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.00 E-value=1.7e-09 Score=100.50 Aligned_cols=127 Identities=9% Similarity=-0.009 Sum_probs=102.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHH--
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPAA-- 236 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~-- 236 (470)
.+..+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|+++..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 445577899999999999999975 4444 457899999999999999999999999965 4666554
Q ss_pred -HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCChhH
Q 012143 237 -LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPKA---AHIWANLANAYYLTGDHRS 307 (470)
Q Consensus 237 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~g~~~~ 307 (470)
+.++|.++ ...|++++|+.+|++++++ .|++ ......++.++..++.+++
T Consensus 395 ~l~nLa~~~---------------------~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 395 AVMRAGLTN---------------------WHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHHH---------------------HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 4899999999999999975 4554 4556788999999999999
Q ss_pred HHHHHHHHHhcC
Q 012143 308 SGKCLEKAAKLE 319 (470)
Q Consensus 308 A~~~~~~a~~~~ 319 (470)
|...|.++.+..
T Consensus 454 ae~~~~~~~~~~ 465 (490)
T 3n71_A 454 NEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999986543
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.99 E-value=1.9e-08 Score=84.07 Aligned_cols=158 Identities=7% Similarity=0.024 Sum_probs=116.6
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHc---------------------CChHHHHHHHHHHhh-------------
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKS---------------------GRLQSSISVLSSLLA------------- 194 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------------------~~~~~A~~~~~~a~~------------- 194 (470)
.-.+.+++-.+..+|++...+...|..|..- .++..|...|.++.+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~ 128 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGF 128 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 5566777888889999977665555444321 124455666555432
Q ss_pred ------------------cCCCChHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhhCCC--ChHHHHHHHHH
Q 012143 195 ------------------VDPNNCDCIGNLGIAYFQ-----SG------DMEQSAKCFQDLILKDQN--HPAALINYAAL 243 (470)
Q Consensus 195 ------------------~~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~ 243 (470)
.+|++++.++..|.+... .| ....|...++++++++|+ +..++..+|.+
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~l 208 (301)
T 3u64_A 129 TREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKF 208 (301)
T ss_dssp HHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 134456666666655532 23 357899999999999999 66689988888
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCChhHHHHHHHHHHhcCCC
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYL-TGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~ 321 (470)
|..... ..-|+.++|..+|+++++++|+. ..+++..|..+.. .|++++|..++++++...|.
T Consensus 209 Y~~vPp----------------~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 209 YAAAPE----------------SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHSCT----------------TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHhCCC----------------ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 872100 01499999999999999999975 9999999999988 49999999999999999888
Q ss_pred c
Q 012143 322 C 322 (470)
Q Consensus 322 ~ 322 (470)
.
T Consensus 273 ~ 273 (301)
T 3u64_A 273 S 273 (301)
T ss_dssp G
T ss_pred C
Confidence 4
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.97 E-value=6.9e-09 Score=72.39 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=68.7
Q ss_pred CccchHHHHHHHHHHHHcCC---hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 162 DTRQAVVWNTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..|+++++.+|..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68999999999999987766 79999999999999999999999999999999999999999999999999843
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.96 E-value=5.8e-09 Score=78.49 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=91.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcC-C-CChHHHHHHHHHHHHcCCH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG---RLQSSISVLSSLLAVD-P-NNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~ 216 (470)
....+....+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | +..++++.+|..++++|+|
T Consensus 8 ~l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 456677789999999999989999999999999999998 6679999999999998 7 5689999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
++|+.+++++++.+|++..+......+-
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999998876554443
No 212
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.93 E-value=2.7e-09 Score=99.19 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=100.3
Q ss_pred ccCcccHHHHHHHHHHhhhc--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----CCCC---hHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGN 205 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~ 205 (470)
+..+|++++|+..+++++.. +|....++.++|.+|..+|+|++|+.++++++++ .|++ ...+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44789999999999999874 3444568889999999999999999999999975 4444 557899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILK-----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
+|.+|..+|++++|+..|++++.+ .|+++.....+.. ++.++...+.+++|...|.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~------------------l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAM------------------RMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999964 6777766443321 23445578889999999988
Q ss_pred HHhc
Q 012143 281 ALKA 284 (470)
Q Consensus 281 ~~~~ 284 (470)
+.+.
T Consensus 461 ~~~~ 464 (490)
T 3n71_A 461 MREA 464 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.78 E-value=8.8e-08 Score=66.74 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=66.7
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 309 (470)
+|+++..+..+|.++.... .....++|...++++++.+|+++.++..+|..++..|+|++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~------------------~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLH------------------KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTT------------------TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc------------------CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6889999999998886310 1122799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccc
Q 012143 310 KCLEKAAKLEPNCMS 324 (470)
Q Consensus 310 ~~~~~a~~~~p~~~~ 324 (470)
.++++++..+|.++.
T Consensus 64 ~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 64 DTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHTCCCTTCC
T ss_pred HHHHHHHhhCCCCcc
Confidence 999999999999443
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.73 E-value=1.3e-07 Score=67.91 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=69.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
++.-.+.+|..++..|+|..|+.+|+++++.. +..+.++..+|.++.++|+++.|+..+++++.++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35667899999999999999999999999863 34578999999999999999999999999999999999987
Q ss_pred HHHH
Q 012143 238 INYA 241 (470)
Q Consensus 238 ~~l~ 241 (470)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=1.8e-07 Score=70.43 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHhhhcccccccc
Q 012143 182 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKD-Q-NHPAALINYAALLLCKYGSVLAGAG 256 (470)
Q Consensus 182 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (470)
...+.+.|.+.+..+|.+.++.+++|+++.+.+ +.++++..++.+++.+ | .+.+.++.++..+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~----------- 82 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY----------- 82 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-----------
Confidence 456778888888888999999999999999988 6779999999999998 7 56788888888876
Q ss_pred cchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 257 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
+.|+|++|..+++++++++|++..+....-.+
T Consensus 83 ----------kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 83 ----------RLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp ----------HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 79999999999999999999988776655443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.64 E-value=1.5e-07 Score=86.00 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=79.3
Q ss_pred CcccHHHHHHHHHHhhhc-----Cccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----CCCC---hHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQS-----DTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLG 207 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la 207 (470)
..|++++|+..+++++.+ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++ ...+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999999874 3444 557889999999999999999999999975 4444 55799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCChHHH
Q 012143 208 IAYFQSGDMEQSAKCFQDLILK-----DQNHPAAL 237 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~ 237 (470)
.+|..+|++++|+..|++++++ .|+++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999975 57777654
No 217
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.51 E-value=2.7e-05 Score=73.08 Aligned_cols=157 Identities=12% Similarity=0.017 Sum_probs=124.1
Q ss_pred ccCcccHHHHHHHHHHhhhcC-ccchHHHHHHHHHHHHcCC---------hHHHHHHHHHHhhcC-CCChHHHHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSD-TRQAVVWNTLGLILLKSGR---------LQSSISVLSSLLAVD-PNNCDCIGNLGIAY 210 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 210 (470)
+.+.|++++|+.+|+++.+.. +.+...|..+-.++...+. .++|.+.|++..... +.+..+|..+...+
T Consensus 36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115 (501)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 457899999999999998753 2345667667667665544 688999999887653 23577899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 012143 211 FQSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-A 288 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~ 288 (470)
.+.|++++|...|+++.... +.+...+..+...+. +.|+.++|.++|++..+..-. +
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~---------------------~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC---------------------RKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999988653 235556666665555 799999999999999876322 5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
...|..+..++.+.|+.++|..++++..+..
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999987643
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.48 E-value=5.2e-05 Score=71.11 Aligned_cols=189 Identities=8% Similarity=0.069 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHH
Q 012143 77 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 156 (470)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 156 (470)
.+..+-..+.+.|+.++|+..|+++.+.... |+......+....+. .+. .......+.+++|..+|+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~-------pd~~tyn~Li~~c~~----~~~--~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQ-------LSQYHYNVLLYVCSL----AEA--ATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC-------CCHHHHHHHHHHHTT----CCC--CSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------CCHhHHHHHHHHHHh----CCc--hhhhhhcchHHHHHHHHH
Confidence 3555667888999999999999999876322 222222111111111 111 111345688999999999
Q ss_pred HhhhcC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CC
Q 012143 157 ESMQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ-NH 233 (470)
Q Consensus 157 ~~~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~ 233 (470)
++.... +.+..+|..+...|.+.|++++|...|++..+.. +.+...|..+-..|.+.|+.++|.+.|++..+..- .+
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 987653 2356788999999999999999999999987752 23577889999999999999999999999986532 24
Q ss_pred hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 012143 234 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYY 300 (470)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~ 300 (470)
...+..+...+. +.|+.++|.+++++.-+. .|+ ..++..+-..+.
T Consensus 175 ~~ty~~Li~~~~---------------------~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~ 221 (501)
T 4g26_A 175 EPELAALLKVSM---------------------DTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------------------hCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHHh
Confidence 556666666665 799999999999998764 454 445555544443
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.47 E-value=4.7e-07 Score=82.97 Aligned_cols=97 Identities=11% Similarity=0.017 Sum_probs=80.8
Q ss_pred ccCcccHHHHHHHHHHhhhc-----Cccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----CCCC---hHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQS-----DTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGN 205 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~ 205 (470)
+..+|++++|+..+++++.. .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++ ...+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44678899999999999864 2344 567889999999999999999999999975 3444 457899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHHH
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILK-----DQNHPAALI 238 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~ 238 (470)
+|.+|..+|++++|+..|++++++ .|+++....
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 999999999999999999999965 677776543
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=2.3e-06 Score=61.30 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (470)
++.-++.+|..++..|+|..|+..|+.+++.. +.....+..+|.++. +.|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~---------------------~~g~~ 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY---------------------QQGDL 62 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH---------------------HTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH---------------------HccCH
Confidence 45678899999999999999999999999864 233455556665555 89999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 272 NVAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 272 ~~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
+.|+.+++++++..|++..+..+++
T Consensus 63 ~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 9999999999999999999988877
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.43 E-value=1.4e-06 Score=79.71 Aligned_cols=87 Identities=14% Similarity=0.036 Sum_probs=73.2
Q ss_pred hccccHHHHHHHHHHHhc----------chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCc---HHHHHHH
Q 012143 380 KTHHEVAAAFETEENELS----------KMEECAGAGESAFLDQASAVNVAKECLLAALKA-----DPKA---AHIWANL 441 (470)
Q Consensus 380 ~~~~~~~~A~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l 441 (470)
...|++++|+..+++.+. +.-...+.++|.+|..+|+|++|+.++++++++ .|++ ...+.+|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456789999999888554 222356789999999999999999999999974 3444 5678999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 442 ANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 442 a~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
|.+|..+|++++|..+|++|+++..
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.42 E-value=9.7e-07 Score=80.88 Aligned_cols=108 Identities=12% Similarity=0.022 Sum_probs=82.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHH--
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPAA-- 236 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~-- 236 (470)
...-+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|+++..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 344566789999999999999975 3444 457899999999999999999999999965 4566553
Q ss_pred -HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc-----CCCCHHH---HHHHHHHHH
Q 012143 237 -LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPKAAHI---WANLANAYY 300 (470)
Q Consensus 237 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~~~la~~~~ 300 (470)
+.++|.++ ...|++++|+.++++++++ .|+++.+ ..+|+.+..
T Consensus 373 ~l~nLa~~~---------------------~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 373 QVMKVGKLQ---------------------LHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHH---------------------HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------HhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 44455444 4899999999999999875 5665544 444555543
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.40 E-value=3.8e-06 Score=60.72 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=83.4
Q ss_pred cHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHH---HHHHHHHHhhcC-C-CChHHHHHHHHHHHHcCCHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQS---SISVLSSLLAVD-P-NNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..+...|.+....++....+.+.+|.++....+... ++..++..+..+ | ...+.++.+|..++++|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34677788888888788889999999999999988777 999999999887 5 567899999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~ 242 (470)
+++.+++..|++..+......
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999888654433
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.26 E-value=1.6e-05 Score=58.61 Aligned_cols=116 Identities=13% Similarity=0.053 Sum_probs=72.0
Q ss_pred hCCCChhHHHHHHHHHHHhCCh------hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCcccccc
Q 012143 70 KMPKNAHAHFLLGLMYQRLGQP------LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKEL 143 (470)
Q Consensus 70 ~~p~~~~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (470)
..|++++.|..........|+. ++-++.|++|+...|... .......+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k----~~~wrrYI~--------------------- 62 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK----YGQNESFAR--------------------- 62 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG----GTTCHHHHH---------------------
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc----cccHHHHHH---------------------
Confidence 5799999999999999999999 888999999998766542 122222223
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
.|...|.. ...++.++|.+.|+.++......+.+|...|..-.++|+...|.+.+
T Consensus 63 ------------------------LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkIL 117 (161)
T 4h7y_A 63 ------------------------IQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLL 117 (161)
T ss_dssp ------------------------HHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------HHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 33333322 33355556666666665555555555666666556666666666666
Q ss_pred HHHHhhCCCChH
Q 012143 224 QDLILKDQNHPA 235 (470)
Q Consensus 224 ~~~l~~~p~~~~ 235 (470)
.+++.+.|....
T Consensus 118 g~AiG~~~k~~~ 129 (161)
T 4h7y_A 118 QKAVERGAVPLE 129 (161)
T ss_dssp HHHHHTTCBCHH
T ss_pred HHHhccCCCcHH
Confidence 666665555443
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.13 E-value=8.8e-05 Score=54.78 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=77.0
Q ss_pred cCCCChHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 195 VDPNNCDCIGNLGIAYFQSGDM------EQSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
+.|++++.|..........|+. ++-++.|++++..-|.. ...|..++.+... .+ .+..
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIr--------------YA-~~~e 72 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVR--------------FA-ELKA 72 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHH--------------HH-HHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHH--------------HH-HHHH
Confidence 4667777777777777666776 66777777777655432 1122233333331 01 1134
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.++.++|.+.|+.++..+...+.+|...|..-.++|+...|...+.+++...|...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 57888888888888887777888888888888888888888888888888887744
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.13 E-value=3.8e-05 Score=55.53 Aligned_cols=97 Identities=9% Similarity=-0.008 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CChHHHHHHHHHHHhhhccccccc
Q 012143 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ---SAKCFQDLILKD-Q-NHPAALINYAALLLCKYGSVLAGA 255 (470)
Q Consensus 181 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~l~~~~~~~~~~~~~~~ 255 (470)
....+...|.+....++.+..+.+.+|+++.+..+... ++..++..+..+ | ...+.++.++..+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y---------- 85 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY---------- 85 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH----------
Confidence 34566777777777788889999999999999988777 999999998876 4 44556666666665
Q ss_pred ccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 256 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
+.|+|++|..+++.+++..|++..+......+
T Consensus 86 -----------klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 86 -----------RLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp -----------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----------HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 89999999999999999999998877655444
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.85 E-value=0.00059 Score=50.14 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=79.7
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh---HHHHHHHHHHhhcCC-CChHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL---QSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~ 218 (470)
+...++......|.+-.. ++-.+.+.+++|.++....+. .+++..++..+..+| ...+.++.+|..++++|+|++
T Consensus 17 l~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~ 95 (144)
T 1y8m_A 17 LYPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM 95 (144)
T ss_dssp CCHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHH
Confidence 344555666666665433 345688999999999998765 479999999999888 457899999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|..+.+.+++..|++..+......
T Consensus 96 Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 96 AKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999887654433
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.84 E-value=0.00045 Score=50.04 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=79.5
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh---HHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL---QSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~ 218 (470)
+...++....+.|.+-. ...-.+.+.+++|.++.+..+. .+++..++..++.+|. ..+.++.+|..+.++|+|++
T Consensus 18 ~~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~ 96 (134)
T 3o48_A 18 LYPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM 96 (134)
T ss_dssp CCHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHH
Confidence 34455666666666544 3333578999999999988765 5799999999998884 57899999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
|..+.+.+++..|++..+......+
T Consensus 97 Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 97 AKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 9999999999999999886544433
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.82 E-value=8.2e-05 Score=56.34 Aligned_cols=102 Identities=9% Similarity=0.007 Sum_probs=76.9
Q ss_pred ccCcccHHHHHHHHHHhhhcCccch---------HHHHHHHHHHHHcCChHHHHHHHHHHhhc------CC---------
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQA---------VVWNTLGLILLKSGRLQSSISVLSSLLAV------DP--------- 197 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~--------- 197 (470)
.+..|.|+.|+.....++....+++ .++..+|.+++..|+|..|...|++++.. .|
T Consensus 30 L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 30 MAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 4567888999999988776554433 37889999999999999999999998764 11
Q ss_pred ----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 198 ----------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 198 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+.++.+.++.||..+|++++|+..++.+-. ....+.....+|.+|
T Consensus 110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1126889999999999999999999887532 233455555666554
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.71 E-value=0.00035 Score=52.92 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---------DCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
..+++.-...+...|.|+.|+-....++.+..+++ .++..+|.+++..|+|..|...|++++..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999877643333 37899999999999999999999999865
No 231
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.31 E-value=0.025 Score=50.52 Aligned_cols=198 Identities=9% Similarity=0.040 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHH
Q 012143 76 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 155 (470)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 155 (470)
.+.+.||.+|...|++++-.+++.......+.-. ..... .+...+...+... .+..+.-+..+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----kak~~---k~v~~l~~~~~~~----------~~~~~~~~~~~ 82 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS----KAKAA---KLVRSLVDMFLDM----------DAGTGIEVQLC 82 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC----HHHHH---HHHHHHHHHHTTS----------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----hHHHH---HHHHHHHHHHhcC----------CCcHHHHHHHH
Confidence 4677899999999999988888776654332211 11111 1111111111111 12235555666
Q ss_pred HHhhhcCccchHH------HHHHHHHHHHcCChHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 156 KESMQSDTRQAVV------WNTLGLILLKSGRLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 156 ~~~~~~~p~~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
...++-..+.-.. -..+|..|+..|+|.+|.+.+.+..+.-.. ..+++..-..+|..++++.++...+
T Consensus 83 ~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l 162 (394)
T 3txn_A 83 KDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAAL 162 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6655433222122 237899999999999999999888764221 1356777888999999999999999
Q ss_pred HHHHhhC---CCChHHHHHHHHHHHhhhcccccccccchhhhhHHH-hcCCHHHHHHHHHHHHhcCCCC-----HHHHHH
Q 012143 224 QDLILKD---QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD-QASAVNVAKECLLAALKADPKA-----AHIWAN 294 (470)
Q Consensus 224 ~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~ 294 (470)
.++.... +.+|.. .|.+... -|..+. ..++|..|...|-++++..... ..+...
T Consensus 163 ~~a~~~~~ai~~~p~i---~a~i~~~--------------~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkY 225 (394)
T 3txn_A 163 TSARTTANAIYCPPKV---QGALDLQ--------------SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKY 225 (394)
T ss_dssp HHHHHHHHHSCCCHHH---HHHHHHH--------------HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhhhccCCCCHHH---HHHHHHH--------------hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 9987653 222322 2333322 267777 7999999999999987543321 233444
Q ss_pred HHHHHHHcCChhH
Q 012143 295 LANAYYLTGDHRS 307 (470)
Q Consensus 295 la~~~~~~g~~~~ 307 (470)
++.+-...++..+
T Consensus 226 lvL~aLl~~~r~e 238 (394)
T 3txn_A 226 MLLCKIMLGQSDD 238 (394)
T ss_dssp HHHHHHHTTCGGG
T ss_pred HHHHHHHcCCHHH
Confidence 5555555555433
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.20 E-value=0.012 Score=42.67 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHhhhcCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 147 ELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
+..+++.+++..++.+| ..-+.++.+|..+.+.|+|++|..+.+.+++..|++..+......+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34566777777776677 3477899999999999999999999999999999998876655444
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.13 E-value=0.018 Score=42.37 Aligned_cols=61 Identities=13% Similarity=0.069 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhcCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 149 EEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
.+++.+++..+...| ..-+.++.+|..+.+.|+|.+|..+.+.+++..|++..+......+
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 455566666666566 3567888999999999999999999999999999988776554433
No 234
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.97 E-value=0.041 Score=41.48 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=55.7
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHH
Q 012143 17 KLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 96 (470)
Q Consensus 17 ~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 96 (470)
+-.+++.++ .+... +-|..++-...++.+ +...|.+.++.-.+. .-+...+.+.-+.||....++..|+.
T Consensus 14 kY~dYdt~~--fLsa~--L~~~~~eY~lL~~I~-LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~ 83 (242)
T 3kae_A 14 RYRDYETAI--FLAAC--LLPCKPEYRMLMSIV-LYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIK 83 (242)
T ss_dssp HTTCHHHHH--HHHHH--HC----CTHHHHHHH-HHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccccHHH--HHHHH--HccCChHHHhhhhhh-hhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554 33333 234455666678888 999999999887775 45668889999999999999999999
Q ss_pred HHHHHHH
Q 012143 97 SYEKAEE 103 (470)
Q Consensus 97 ~~~~al~ 103 (470)
.++..+.
T Consensus 84 ~le~il~ 90 (242)
T 3kae_A 84 SLESILE 90 (242)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999984
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.96 E-value=0.049 Score=48.65 Aligned_cols=177 Identities=10% Similarity=-0.046 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhc-cCchHHhhhhHHHHHHHhhcCCCCCCCc
Q 012143 290 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS-QEPTEQLSWAGNEMASILREGDPVQIEP 368 (470)
Q Consensus 290 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (470)
.+...+|.+|...|++++-..++......-+.-+.+........+-+.... ....+.......+.......... ....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r-~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKR-TFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 455788999999999988888887766555555544444333333322222 12221111222222222221111 0000
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhcch--------hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC---CCc---
Q 012143 369 PIAWAGFAAVQKTHHEVAAAFETEENELSKM--------EECAGAGESAFLDQASAVNVAKECLLAALKAD---PKA--- 434 (470)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~--- 434 (470)
...-..++..|...|++.+|...+.+..... -.+.+.....+|...+++.++...+.++.... +.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 0122378999999999999998888744421 11445567778889999999999999887542 122
Q ss_pred -HHHHHHHHHHHH-HcCChHHHHHHHHHHHHhhcc
Q 012143 435 -AHIWANLANAYY-LTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 435 -~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 467 (470)
+.....-|..+. ..++|..|..+|-++++-|.+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 345566788888 899999999999999877654
No 236
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.71 E-value=0.039 Score=45.65 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=54.4
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC 108 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 108 (470)
+++.|++++++..+...++.+|.+......+..+++-.|+++.|...++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 6788999999999999999999999999999999999999999999999999997653
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=96.52 E-value=0.33 Score=41.64 Aligned_cols=80 Identities=8% Similarity=-0.012 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHh----------------h---cCCCChHHHHHHHH-
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL----------------A---VDPNNCDCIGNLGI- 208 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----------------~---~~~~~~~~~~~la~- 208 (470)
.+|+.+-.+.-...-.++..+..+|..+...|++.+|..+|-..- + -.|...+.+...+.
T Consensus 117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 455555554433334678999999999999999999999885321 1 12223344444443
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 012143 209 AYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~l~ 228 (470)
.|...|+...|...+....+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 45678888888888776553
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.48 E-value=0.64 Score=44.47 Aligned_cols=52 Identities=8% Similarity=-0.048 Sum_probs=36.5
Q ss_pred HHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 412 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 412 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
.+.|+++.|..+|+..-...+..+...|.+|..+...|+.++|..+|+++.+
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3457788887777765443334566777888887788888888887777654
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.023 Score=55.34 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=85.2
Q ss_pred HcCC-hHHHHHHHHHHhhcCCCChHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHhh--------CCCChHHHH---HHHH
Q 012143 178 KSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYF--QS-GDMEQSAKCFQDLILK--------DQNHPAALI---NYAA 242 (470)
Q Consensus 178 ~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~--~~-g~~~~A~~~~~~~l~~--------~p~~~~~~~---~l~~ 242 (470)
..++ ++.|+..+++....+|.... ++..+.+.. .. .+--+|+..+.+.++. .+.+..... ..+.
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 57899999999998886543 333333222 12 3445677777776632 333332211 1111
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
++.. .+..+...|+++-|+++.++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~--------------Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNI--------------QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHH--------------HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2221 2555667999999999999999999999999999999999999999999888766
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.43 E-value=0.13 Score=42.61 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=47.3
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 175 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
...+.|..++|+......++.+|.+......+..+++-.|+++.|.+-++.+.+++|......
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 345667777788888777777888877777777777778888888888887777777665443
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.28 Score=45.00 Aligned_cols=196 Identities=11% Similarity=0.019 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhcc
Q 012143 268 ASAVNVAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 341 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 341 (470)
.|+++.|++.+...-+. .+....+...+..++...|+++...+.+.-..........+...+....+.-.....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 35678888776544432 233577888899999999999988777765544433222222211111111111111
Q ss_pred CchHHhhhhHHHHHHHhhcCCC----CCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--------chhhhhHhhHHH
Q 012143 342 EPTEQLSWAGNEMASILREGDP----VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESA 409 (470)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~l~~ 409 (470)
. .+ . .........+..... +..........++.++...|++.+|...+..... ..-.+.+.....
T Consensus 109 ~-~d-~-~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 109 S-LD-L-NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp T-TH-H-HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred c-hh-H-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 0 00 0 000111111111111 1112456678899999999999999998887332 112255667788
Q ss_pred HHHHhccHHHHHHHHHHHHh---cCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 410 FLDQASAVNVAKECLLAALK---ADPKA----AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 410 ~~~~~~~~~~A~~~~~~al~---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
++...+++.+|...+.++.. ..+.. ...+...|.++...++|.+|..+|..+++.+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 89999999999999998743 22333 34667889999999999999999999987654
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.037 Score=53.86 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
..+..-+..+...|+++-|+.+-++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 456667888889999999999999999999999999999999999999999999888876
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.31 E-value=0.09 Score=52.76 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=24.2
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
..|++++|.+..+.. +++..|..+|..+...|+++.|+.+|.++
T Consensus 664 ~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345555555554322 34455666666666666666666666654
No 244
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.22 E-value=0.26 Score=37.26 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=77.1
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C--CCChHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK--D--QNHPAALI 238 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~--p~~~~~~~ 238 (470)
|..++.-..++.++.-.|.|..++-.+.+ -+...+.+.-+.||...+++..|+..++..++- + |+- ++.
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~-d~~- 102 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV-DAR- 102 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-CHH-
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-ccc-
Confidence 34445566677788888888888776643 244666777788888888888888888888832 2 221 111
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH-IWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
+ +..-.+|.+.+ .+..+|.++...|+.++|+.+|.....
T Consensus 103 -~---------------------------------------~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 103 -I---------------------------------------QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp -H---------------------------------------HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -c---------------------------------------ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 0 11123565555 456679999999999999999999998
Q ss_pred cCCCcc
Q 012143 318 LEPNCM 323 (470)
Q Consensus 318 ~~p~~~ 323 (470)
..|-.+
T Consensus 143 ~~~lf~ 148 (242)
T 3kae_A 143 KSFLFS 148 (242)
T ss_dssp HCCCHH
T ss_pred Cccccc
Confidence 887644
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.066 Score=41.39 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=46.8
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.++.|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-. +-.+..+|.-.|+.+.-..
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 34667778888777654 4567788888888888888888888877422 2334445555666655444
Q ss_pred HHHHH
Q 012143 222 CFQDL 226 (470)
Q Consensus 222 ~~~~~ 226 (470)
.-+.+
T Consensus 82 la~iA 86 (177)
T 3mkq_B 82 MQNIA 86 (177)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.01 E-value=0.05 Score=50.35 Aligned_cols=79 Identities=20% Similarity=0.097 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
.+..+|++......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5677999999999999999999999999999999999999999999999999999999998888889998888887764
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.42 Score=36.92 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+++..+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445555544 7889999999988765 568899999999999999999999999874
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.89 E-value=1.3 Score=42.39 Aligned_cols=260 Identities=10% Similarity=-0.009 Sum_probs=135.2
Q ss_pred HHHHHHHhcCCCCcchhhhcccch--hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 27 SKMDSALEFGVDADGDQSGLGTSS--SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
..+...+...|+.+.......... +...+++......+.. .|.+...-+.........|+..+|....+++...
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 456677777888776655444431 2234555555554432 4777777777888888888877777666665432
Q ss_pred HhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHH-------------hhhcCccchH----
Q 012143 105 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE-------------SMQSDTRQAV---- 167 (470)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------~~~~~p~~~~---- 167 (470)
....+.. ...+...+...+.+-...-...+...+..|+...|..+... ++..+|.+..
T Consensus 132 ~~~~p~~-----c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~ 206 (618)
T 1qsa_A 132 GKSQPNA-----CDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFAR 206 (618)
T ss_dssp SSCCCTH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHH
T ss_pred CCCCcHH-----HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHh
Confidence 2111000 00000111100000000000000011222333333222221 1222333221
Q ss_pred ---------HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 168 ---------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD----CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 168 ---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
.....+.......+.+.|...+.+.....+-+.. .+..++.-....+...++...+.+.....++ .
T Consensus 207 ~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~ 285 (618)
T 1qsa_A 207 TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-T 285 (618)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-H
T ss_pred ccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-h
Confidence 1222344444556778888888776543322222 2222333333344355667777765543332 2
Q ss_pred HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 012143 235 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 314 (470)
......+...+ +.|+++.|..+|.++-...+......+.+|.++...|+.++|..+|++
T Consensus 286 ~~~e~~~r~Al---------------------r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 286 SLIERRVRMAL---------------------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp HHHHHHHHHHH---------------------HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------------HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22222222222 579999999999887664445788899999999999999999999999
Q ss_pred HHh
Q 012143 315 AAK 317 (470)
Q Consensus 315 a~~ 317 (470)
+..
T Consensus 345 ~a~ 347 (618)
T 1qsa_A 345 LMQ 347 (618)
T ss_dssp HHT
T ss_pred Hhc
Confidence 985
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.48 E-value=0.13 Score=46.24 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=67.9
Q ss_pred ccHHHHHHHHHHhhhcCccc----------------------hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHH
Q 012143 146 EELEEILSKLKESMQSDTRQ----------------------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCI 203 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 203 (470)
|+.+.|...+.+++...... ..+...++..+...|++.+|+..+..++..+|-+-.++
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 56677777777777653211 12344567788899999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 204 GNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
..+..++...|+..+|+..|+++.+
T Consensus 209 ~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 209 TQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999998754
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.2 Score=45.77 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=87.1
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
..+++.+..+.+-......-..++..+|..|...|++++|.++|.++..... ...+.+.....++...+++..+...
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4455555554442223334456888999999999999999999999887533 3357888889999999999999999
Q ss_pred HHHHHhhCC--CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 223 FQDLILKDQ--NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 223 ~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
+.++-.... .++..... -.++ .|.++...++|..|...|..++....
T Consensus 191 ~~ka~~~~~~~~d~~~~~~-lk~~----------------~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNR-YKTY----------------YGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHH-HHHH----------------HHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhhcCCCHHHHHH-HHHH----------------HHHHHHHhChHHHHHHHHHHHhccCC
Confidence 999875532 23322211 1122 24555678999999999988876543
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.03 E-value=0.65 Score=41.74 Aligned_cols=90 Identities=11% Similarity=0.011 Sum_probs=71.6
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCC--------C--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPN--------N--------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~--------~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
|......|+.+.|...+.+++.+... . ..+...++..+...|++.+|+..+.+++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34444568888899999998886321 1 1234566778889999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
|-+...+..+..++. ..|+..+|+..|+++-.
T Consensus 202 P~~E~~~~~lm~al~---------------------~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 202 PYREPLWTQLITAYY---------------------LSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHH
Confidence 999999988888887 79999999999987643
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.00 E-value=3.1 Score=43.42 Aligned_cols=138 Identities=15% Similarity=0.056 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC--hHHHHHHHHHHHh
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNH--PAALINYAALLLC 246 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~--~~~~~~l~~~~~~ 246 (470)
..+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..- +.. ......+..+...
T Consensus 816 ~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345556777788776654 334567777788999999999999999999999874321 111 1111111111000
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHcCChhHHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-AA----HIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
..........+..+..++.+.+.++.++++.+.+++..+. +. ..|.++-..+...|+|++|...+
T Consensus 892 -~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 892 -YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp -TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred -ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 0000000112223344555666666666666666665432 21 14555566666666666665555
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.90 E-value=2.2 Score=39.02 Aligned_cols=199 Identities=10% Similarity=-0.004 Sum_probs=113.2
Q ss_pred CcccHHHHHHHHHHhhhc------CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH
Q 012143 144 EPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 217 (470)
..|++..|++.+...-+. .+....+...+..++...|+|+...+.+.-..........+...+.....
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~------ 101 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVM------ 101 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHH------
T ss_pred HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------
Confidence 457788888877444322 23345677788889999999998877776555444333333222221111
Q ss_pred HHHHHHHHHHhhCCCC-hHHHHHHHHHHHhh-hccccc---ccccchhhhhHHHhcCCHHHHHHHHHHHHhcC----CC-
Q 012143 218 QSAKCFQDLILKDQNH-PAALINYAALLLCK-YGSVLA---GAGANTGEGACLDQASAVNVAKECLLAALKAD----PK- 287 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----p~- 287 (470)
.+ +...|.. ......+...+... .+...- .+.....++.++...|++.+|...+.....-. +.
T Consensus 102 ---~~----l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~ 174 (445)
T 4b4t_P 102 ---EY----LKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS 174 (445)
T ss_dssp ---HH----HHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH
T ss_pred ---HH----HhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH
Confidence 11 1111111 00111110000000 000000 01112336777889999999999999875321 11
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCC
Q 012143 288 -AAHIWANLANAYYLTGDHRSSGKCLEKAAKL---EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP 363 (470)
Q Consensus 288 -~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (470)
-.+.+....+++...+++.+|...+.++... .+..+. .
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~--l------------------------------------ 216 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES--L------------------------------------ 216 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH--H------------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH--H------------------------------------
Confidence 3567888899999999999999999887431 111111 0
Q ss_pred CCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc
Q 012143 364 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 397 (470)
Q Consensus 364 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 397 (470)
....+...|.++...++|.+|...|.....
T Consensus 217 ----k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 ----KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 123566778888888899988888877544
No 254
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.89 E-value=0.48 Score=47.46 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=68.9
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
....|+++.|.+..+ ..+++..|..+|..+.+.|+++.|+.+|.++-.
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------------------------- 709 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------------------------- 709 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------------------------
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------------------------
Confidence 445667777766653 346677888888888888888888888887532
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
++.+..++.. ..+.+.+..++......|++..|..+|.+. .+ .-....+|
T Consensus 710 -----------------~~~l~~l~~~-----~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~---~~~a~~~~ 759 (814)
T 3mkq_A 710 -----------------LESLFLLHSS-----FNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD---IQGAKDLL 759 (814)
T ss_dssp -----------------HHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC---HHHHHHHH
T ss_pred -----------------hhhhHHHHHH-----cCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC---HHHHHHHH
Confidence 2222222221 234445556677777777777777666542 11 12233456
Q ss_pred HHcCCHHHHHHHHHH
Q 012143 211 FQSGDMEQSAKCFQD 225 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~ 225 (470)
...+++++|+..-++
T Consensus 760 ~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 760 IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHH
Confidence 667777777766554
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.88 E-value=0.45 Score=47.79 Aligned_cols=99 Identities=7% Similarity=-0.017 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNHPAALINY 240 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l 240 (470)
...+..+...|.+.|+.++|...|....+. -.-+...|..+...|.+.|+.++|.+.|+++.... ..+...+..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346778888999999999999999765432 23357788999999999999999999999987643 2345555555
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCC-HHHHHHHHHHHHhcC
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAALKAD 285 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~ 285 (470)
...+. +.|+ .++|.++|++.....
T Consensus 207 I~glc---------------------K~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMG---------------------RQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHH---------------------HHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHH---------------------hCCCcHHHHHHHHHHHHHcC
Confidence 55544 5776 478889999888754
No 256
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.34 E-value=0.37 Score=44.63 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
..+..+|.+......+..|..+|.+|..+.|++...+..+|.+.. ..|+.-+|+-+|.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~---------------------~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS---------------------SKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh---------------------cccccHHHHHHHHH
Confidence 367788999999999999999999999999999999999998887 57888899999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHH
Q 012143 281 ALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 281 ~~~~~p~~~~~~~~la~~~~~ 301 (470)
++......+.+..++...+..
T Consensus 212 sl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 212 SIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHSSSBCCHHHHHHHHHHHHH
T ss_pred HHhcCCCChhHHHHHHHHHHH
Confidence 998777788888888887765
No 257
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.21 E-value=9.5e-05 Score=66.25 Aligned_cols=226 Identities=12% Similarity=0.033 Sum_probs=142.8
Q ss_pred CCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 37 VDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
-+.+..|..+|.. .+..+...+|++.|-+ .+++..+.....+..+.|++++=+.++.-+-+...+ |.
T Consensus 51 ~n~p~VWs~LgkA-qL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke-------~~ 117 (624)
T 3lvg_A 51 CNEPAVWSQLAKA-QLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-------SY 117 (624)
T ss_dssp CCCCCCSSSHHHH-TTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS-------TT
T ss_pred hCCccHHHHHHHH-HHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-------cc
Confidence 3577899999999 9999999999998864 455555666667777889999999988877653211 11
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 196 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 196 (470)
.- ..+..+|...++. ++ ++..+ ..|+.+. ....|.-++..|.|+.|.-.|...
T Consensus 118 ID------teLi~ayAk~~rL--------~e-------lEefl-~~~N~A~-iq~VGDrcf~e~lYeAAKilys~i---- 170 (624)
T 3lvg_A 118 VE------TELIFALAKTNRL--------AE-------LEEFI-NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNV---- 170 (624)
T ss_dssp TT------HHHHHHHHTSCSS--------ST-------TTSTT-SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGS----
T ss_pred cH------HHHHHHHHhhCcH--------HH-------HHHHH-cCCCccc-HHHHHHHHHHccCHHHHHHHHHhC----
Confidence 11 1112222222221 00 00111 1244333 346778888888888777666542
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc---------ccccchhhhhHHHh
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------GAGANTGEGACLDQ 267 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 267 (470)
.-|..|+.++..+|+|..|++.-+++ +++..|...........+..++ .++-...+-..|..
T Consensus 171 ----sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~ 241 (624)
T 3lvg_A 171 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD 241 (624)
T ss_dssp ----CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSST
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHh
Confidence 22345667777777777777666554 3445555555555543333222 24444556677889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
.|.+++-+..++.++.+..-.......||.+|.+- +.++-.+++
T Consensus 242 ~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 242 RGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp TCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 99999999999999998888899999999888753 344444444
No 258
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.08 E-value=0.89 Score=45.75 Aligned_cols=91 Identities=10% Similarity=0.029 Sum_probs=74.3
Q ss_pred ccccCcccHHHHHHHHHHhhhc----CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHcC
Q 012143 140 DKELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSG 214 (470)
Q Consensus 140 ~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 214 (470)
+.+.+.|+.++|..+|..+.+. -..+...|..+...|.+.|+.++|.+.|++..+.. .-+...|..+..++.+.|
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G 214 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Confidence 3577999999999999775432 23457889999999999999999999999987752 235778888888999999
Q ss_pred CH-HHHHHHHHHHHhhC
Q 012143 215 DM-EQSAKCFQDLILKD 230 (470)
Q Consensus 215 ~~-~~A~~~~~~~l~~~ 230 (470)
+. ++|.+.|+++....
T Consensus 215 ~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 215 QDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 84 78899999998754
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.95 E-value=2.1 Score=44.64 Aligned_cols=220 Identities=11% Similarity=0.079 Sum_probs=122.3
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
+...+.++.+.. .+..-|.++...+.+|.++...|++++|..+|+++-.......
T Consensus 822 l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~--------------------- 876 (1139)
T 4fhn_B 822 LFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT--------------------- 876 (1139)
T ss_dssp HHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCC---------------------
T ss_pred HHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccc---------------------
Confidence 445555655544 3345678888889999999999999999999988632100000
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-Ch----HHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-NC----DCIGN 205 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~----~~~~~ 205 (470)
........ ..............+..|..+..++...|.++.+++.-+.|++..+. +. ..|..
T Consensus 877 ------------~l~~~~~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~ 943 (1139)
T 4fhn_B 877 ------------SQFAVLRE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHE 943 (1139)
T ss_dssp ------------CSCSSHHH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred ------------hhhhhhcc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 00000011 11111111112223456777888899999999999999999987543 32 25677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH-hc
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL-KA 284 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~ 284 (470)
+-..+...|+|++|...+...-.. ......+..+...+.....- .. + .-+--.|..++-.+.+..-. ..
T Consensus 944 iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~cLr~LV~~lce~~~~-----~~---L-~~lpf~gl~~~Vd~IL~~kAr~~ 1013 (1139)
T 4fhn_B 944 TLKTACAAGKFDAAHVALMVLSTT-PLKKSCLLDFVNQLTKQGKI-----NQ---L-LNYSMPTLRQDVDNLLERKAFQM 1013 (1139)
T ss_dssp HHHHHHHHCCSGGGGHHHHHHHHS-SSCHHHHHHHHHHHHHHCCH-----HH---H-HHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCCh-----hh---h-hCCCCccHHHHHHHHHHHHHHhC
Confidence 778888999999998888654321 22233444443333321000 00 0 00011344444444443211 11
Q ss_pred -CCC-CHHHHHHHHHHHHHcCChhHHHH-HHHHHHhc
Q 012143 285 -DPK-AAHIWANLANAYYLTGDHRSSGK-CLEKAAKL 318 (470)
Q Consensus 285 -~p~-~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~~ 318 (470)
++. .+..|..|=..+...|++..|.. .|+++.++
T Consensus 1014 ~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 1014 INVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 222 24555556666677888876654 56776654
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.94 E-value=2.8 Score=36.22 Aligned_cols=79 Identities=8% Similarity=0.150 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHh----------------hcCCCChHHHHHHHH-HHH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL----------------AVDPNNCDCIGNLGI-AYF 211 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----------------~~~~~~~~~~~~la~-~~~ 211 (470)
.+|+.+-.+.-...-.++..+..+|..|...+++.+|..+|-..- +..|...+.+...+. .|.
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL 198 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYL 198 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455555554222334678999999999999999999988873210 012333444444443 456
Q ss_pred HcCCHHHHHHHHHHHH
Q 012143 212 QSGDMEQSAKCFQDLI 227 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l 227 (470)
..++...|...+....
T Consensus 199 ~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 199 LVANVRAANTAYRIFT 214 (336)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 7888888888665544
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.64 E-value=1.3 Score=40.82 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=53.4
Q ss_pred HHHHcCChHHHHHHHHHHhh-----------cCCCChHHHHHHHHHHHHcCCHHHHHH----------HHHHHHh-----
Q 012143 175 ILLKSGRLQSSISVLSSLLA-----------VDPNNCDCIGNLGIAYFQSGDMEQSAK----------CFQDLIL----- 228 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~----------~~~~~l~----- 228 (470)
.+...+++++|.++-...+. +++-...+|+..+.++...|+...... .+-.+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34567888888887766551 134456678888888888887765322 2222222
Q ss_pred hCCCChH-HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHH
Q 012143 229 KDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-------AAHIWANLANAYY 300 (470)
Q Consensus 229 ~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~ 300 (470)
.++.... .+..+- ..|...+.++.|..+..++. .|. ....++.+|.++.
T Consensus 225 ~D~~~qa~l~nllL---------------------RnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a 281 (523)
T 4b4t_S 225 HDNETKAMLINLIL---------------------RDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINA 281 (523)
T ss_dssp SSSCHHHHHHHHHH---------------------HHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHH---------------------HHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHH
Confidence 1222111 122222 34457899999999999985 443 2456788899999
Q ss_pred HcCChhHHHHHHHHHHhcCCCcc
Q 012143 301 LTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.+++|.+|..++..|+...|.+.
T Consensus 282 ~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 282 IQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HhccHHHHHHHHHHHHHhCCcch
Confidence 99999999999999999988764
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.01 E-value=1.6 Score=39.76 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=15.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~ 195 (470)
..|.++...++|.+|...|..++.-
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3455566666666666666665543
No 263
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.66 Score=42.73 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
+..+..+-..|...+.+++|.....++. .|.. ...++.+|.++.-+++|.+|.+++..++...|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 4566778889999999999999999985 4432 34577889999999999999999999999887654
No 264
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.81 E-value=18 Score=36.41 Aligned_cols=225 Identities=14% Similarity=0.140 Sum_probs=114.5
Q ss_pred hhhcChhhHHHHHHHHHHhC-CCC----hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhh
Q 012143 52 SREEKVSSLKTGLVHVARKM-PKN----AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHA 126 (470)
Q Consensus 52 ~~~~~~~~A~~~~~~~l~~~-p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 126 (470)
...|+.+++...+.+.+... .++ ..+++.+|.++...+ .+++..+...+......... ........ .+..+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~-~~~~~ir~-gAaLG 460 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGD-EDVDVLLH-GASLG 460 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSC-HHHHHHHH-HHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccc-cccHHHHH-HHHHH
Confidence 35567777777777655421 122 336677777776554 46888888777642100000 00111111 23346
Q ss_pred ccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch--HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHH
Q 012143 127 QCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA--VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG 204 (470)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 204 (470)
+|.++...++ +++...+...+..+.... .+-+.+|.++...|+-+-....+..+.+-..+...-..
T Consensus 461 LGla~~GS~~------------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~a 528 (963)
T 4ady_A 461 IGLAAMGSAN------------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGL 528 (963)
T ss_dssp HHHHSTTCCC------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHhcCCCC------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHH
Confidence 6666554444 577777777776443221 34556788888888866655555555543332222233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc
Q 012143 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 284 (470)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 284 (470)
.+|..+...|+.+.+-...+..... .++.. ..+.++. +|..|...|+...-...+..+..-
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~--~dp~v--Rygaa~a---------------lglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLAS--DESLL--RYGGAFT---------------IALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHC--SCHHH--HHHHHHH---------------HHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhC--CCHHH--HHHHHHH---------------HHHHhcCCCCHHHHHHHHHHhccC
Confidence 4444455677777666665554432 23333 2333322 244555778764444466665543
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHH
Q 012143 285 DPKAAHIWANLANAYYLTGDHRSSGKC 311 (470)
Q Consensus 285 ~p~~~~~~~~la~~~~~~g~~~~A~~~ 311 (470)
..++..-.--+|......|+.+.+...
T Consensus 590 ~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 222333223333333444554433333
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.81 E-value=11 Score=32.42 Aligned_cols=88 Identities=8% Similarity=-0.067 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHH-
Q 012143 365 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN- 443 (470)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~- 443 (470)
...+|..+..+|..+...+++.+|...+-..-+. +...+..+ + .+++++.-.-.|...+.+...+.
T Consensus 130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~-s~~~~a~~---l---------~~w~~~~~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 130 KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD-SMIKYVDL---L---------WDWLCQVDDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHHHHHHH---H---------HHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc-cHHHHHHH---H---------HHHHHhcCCCCcchHHHHHHHHHH
Confidence 4467889999999999999998888766421110 11111100 0 01111100023444566666655
Q ss_pred HHHHcCChHHHHHHHHHHHHhh
Q 012143 444 AYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 444 ~~~~~g~~~~A~~~~~~al~~~ 465 (470)
.|...|+...|...|....+.+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 4578999999999998877665
No 266
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.71 E-value=4.5 Score=29.54 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=52.4
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
.+..++...+..+|+-++..+.+..++...|-+|+.+..+|..|.+.|+..+|-+.+.+|-+.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345555554678889999999999887878888999999999999999999999999999874
No 267
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.91 E-value=0.0071 Score=54.58 Aligned_cols=251 Identities=11% Similarity=0.069 Sum_probs=151.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 91 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 91 (470)
|+..-..|+..+|| +.|-++ +++..+...-.. ..+.|.+++.+..+.-+-+. -..+.+=..|..+|.+.|+.
T Consensus 61 gkAqL~~~~v~eAI-dsyIkA-----~Dps~y~eVi~~-A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 61 AKAQLQKGMVKEAI-DSYIKA-----DDPSSYMEVVQA-ANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRL 132 (624)
T ss_dssp HHHTTTSSSCTTTT-TSSCCC-----SCCCSSSHHHHH-TTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSS
T ss_pred HHHHHccCchHHHH-HHHHhC-----CChHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcH
Confidence 44444455666666 544433 455555555555 67789999999888765433 45556666777888888776
Q ss_pred hHHHHHHHHHHHHHhhhhcccchh------hhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc
Q 012143 92 LKAVSSYEKAEEILLRCEADIARP------ELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 165 (470)
Q Consensus 92 ~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 165 (470)
.+-.+++.. |+.......+ .....+.+.+....=+..+..+ +...|+|..|++..+++ ++
T Consensus 133 ~elEefl~~-----~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAst----LV~L~~yq~AVdaArKA-----ns 198 (624)
T 3lvg_A 133 AELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAST----LVHLGEYQAAVDGARKA-----NS 198 (624)
T ss_dssp STTTSTTSC-----CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSS----SSSCSGGGSSTTTTTTC-----CS
T ss_pred HHHHHHHcC-----CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHH----HHHHHHHHHHHHHHHhc-----CC
Confidence 653333211 1110000000 0000011111111111222222 56777778888877665 56
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+.+|.....++...+++.-|..+--..+- .|+.. -.+...|...|.+++-+..++.++.+..-+......||.+|.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL---~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCC---SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHH---HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 77888999999999999999888777654 33322 234456888999999999999999998889999999998886
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh-c-CCC------CHHHHHHHHHHHHHcCChhHHHH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK-A-DPK------AAHIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~p~------~~~~~~~la~~~~~~g~~~~A~~ 310 (470)
. =++++-.++++--.. + -|. ....|..+..+|..-.+|+.|..
T Consensus 275 K----------------------Y~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 K----------------------FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S----------------------SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred h----------------------cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2 234444444432111 0 011 34567777777887778876653
No 268
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.70 E-value=30 Score=34.85 Aligned_cols=183 Identities=14% Similarity=0.074 Sum_probs=95.3
Q ss_pred hhhhHHHHHHHHHHHHhcC-CCC----cchhhhcccchhhhhcChhhHHHHHHHHHHhCC---C---Ch----hHHHHHH
Q 012143 18 LGKCRSRISSKMDSALEFG-VDA----DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMP---K---NA----HAHFLLG 82 (470)
Q Consensus 18 ~g~~~~a~~~~~~~~l~~~-p~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~---~~----~~~~~l~ 82 (470)
.|+.++.+ ..+.+.+... .++ ..+.+.+|.+ .. |...++...+...+..+. . +. .+-..||
T Consensus 387 ~g~~~~gl-~~L~~yL~~~~s~~~~ik~GAllaLGli-~a--g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 387 KGNLLEGK-KVMAPYLPGSRASSRFIKGGSLYGLGLI-YA--GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp SSCTTTHH-HHHTTTSTTSCCSCHHHHHHHHHHHHHH-TT--TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred cCchHHHH-HHHHHhccccCCCcHHHHHHHHHHHHHh-cC--CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34445555 5565555421 111 1234455555 33 333467787877775432 0 11 3555777
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC
Q 012143 83 LMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 162 (470)
Q Consensus 83 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 162 (470)
.++.-.++ +++.+.+...+..+. . .. ...+-..+|.++..-|+ -+-...++..+....
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~--------~-~~-~~~AalALGli~vGTgn-----------~~ai~~LL~~~~e~~ 520 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS--------A-TS-GEAAALGMGLCMLGTGK-----------PEAIHDMFTYSQETQ 520 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC--------H-HH-HHHHHHHHHHHHTTCCC-----------HHHHHHHHHHHHHCS
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC--------H-HH-HHHHHHHHhhhhcccCC-----------HHHHHHHHHHHhccC
Confidence 77765554 466777777765311 0 11 11233445555444443 233344444444433
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD----CIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.+...-...+|..+...|+.+.+....+..... + ++. +-..+|..|...|+...-...+..+..
T Consensus 521 ~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 521 HGNITRGLAVGLALINYGRQELADDLITKMLAS-D-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-S-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 333333344555566778887777776665543 2 233 334567778899996554446666654
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.98 E-value=22 Score=36.24 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=43.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
.+...+...|.++-|. ..+..-|.++..-+.+|.++...|++++|..+|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3566677788877554 3556677888888999999999999999999999875
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.13 E-value=33 Score=29.66 Aligned_cols=244 Identities=13% Similarity=0.017 Sum_probs=123.0
Q ss_pred ccHHHHHHHHHHhhhcCcc---c--hHHHHHHHHHHHHcCChHHHHHHHHHHhhc---CCCC---hHHHHHHHHHHHHcC
Q 012143 146 EELEEILSKLKESMQSDTR---Q--AVVWNTLGLILLKSGRLQSSISVLSSLLAV---DPNN---CDCIGNLGIAYFQSG 214 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~---~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~---~~~~~~la~~~~~~g 214 (470)
+..++-+.-++.-++.... . -..+..++.-|.++++|++|++.+-..... .... .+.-..+..+|.+.+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~ 89 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 3445555555555554422 1 123445566678889999999876554321 1110 122333335554443
Q ss_pred C--HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 012143 215 D--MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292 (470)
Q Consensus 215 ~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 292 (470)
- -++.+.-+.+++..-|........ =..+|+.+-.+.-...-.++..+
T Consensus 90 ~~~~~~~~~rL~~L~~~~~~~~p~r~~------------------------------fi~~ai~WS~~~g~~~~Gdp~LH 139 (336)
T 3lpz_A 90 QRVDGASRGKLLGCLRLFQPGEPVRKR------------------------------FVKEMIDWSKKFGDYPAGDPELH 139 (336)
T ss_dssp CCCCHHHHHHHHHHHTTSCTTCHHHHH------------------------------HHHHHHHHHHHHSSCTTCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCcHHHH------------------------------HHHHHHHHHhhcCCCCCCCHHHH
Confidence 1 233444444444444432222111 12445555554222233589999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHH
Q 012143 293 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAW 372 (470)
Q Consensus 293 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (470)
..+|..|++.+++.+|..+|- +..+ +.+..+..+....... . .+.....+
T Consensus 140 ~~ig~~~~~e~~~~~Ae~H~i--lg~~-~s~~~~a~mL~ew~~~------------------------~---~~~e~dlf 189 (336)
T 3lpz_A 140 HVVGTLYVEEGEFEAAEKHLV--LGTK-ESPEVLARMEYEWYKQ------------------------D---ESHTAPLY 189 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHT--TSCT-THHHHHHHHHHHHHHT------------------------S---CGGGHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHH--hcCC-chHHHHHHHHHHHHHh------------------------c---CCccHHHH
Confidence 999999999999999998883 2111 1112222221111110 0 01222333
Q ss_pred HHHHH-HHhccccHHHHHHHHHH---Hhc---ch----------------hhhhHh---hHHHHHHHhcc---HHHHHHH
Q 012143 373 AGFAA-VQKTHHEVAAAFETEEN---ELS---KM----------------EECAGA---GESAFLDQASA---VNVAKEC 423 (470)
Q Consensus 373 ~~l~~-~~~~~~~~~~A~~~~~~---~~~---~~----------------~~~~~~---~l~~~~~~~~~---~~~A~~~ 423 (470)
...+. .|...++...|...+.. .+. +. +..... .+-..-++.+. |..-...
T Consensus 190 iaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~ 269 (336)
T 3lpz_A 190 CARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSK 269 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33333 34566677666654433 221 10 111222 22223333442 5666677
Q ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHcC
Q 012143 424 LLAALKADP-KAAHIWANLANAYYLTG 449 (470)
Q Consensus 424 ~~~al~~~p-~~~~~~~~la~~~~~~g 449 (470)
|+..++.+| .....+..+|.+|+...
T Consensus 270 Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 270 YEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp THHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 777888888 77888999999998664
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=77.95 E-value=18 Score=26.51 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=27.8
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
...+|+-++-.+.+...+.-.+-++..+..+|.+|.+.|+..+|-+.+.++-+
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34455555555555554444444555555566666666666655555555543
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.55 E-value=22 Score=28.04 Aligned_cols=72 Identities=7% Similarity=-0.001 Sum_probs=55.2
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 233 (470)
.||....+|...+..+ ..+...++...|.-... +....+..|...|..+...|++.+|.++|+..++.....
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3455566777777765 24446688888887765 456778889999999999999999999999999865433
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=77.45 E-value=3.3 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 439 ANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 439 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
..+|..+...|++++|..+|-+|+.++++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45777777777777888878777777754
No 274
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=75.25 E-value=8.2 Score=26.03 Aligned_cols=30 Identities=20% Similarity=0.073 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRC 108 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 108 (470)
..+|..+...|+++.|+.+|-+|+...|.+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 458999999999999999999999997765
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=71.08 E-value=13 Score=23.70 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChH
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
..+|..+...|++++|..+|-+|+...|.-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34677777777777777777777777766443
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=70.66 E-value=5.2 Score=26.34 Aligned_cols=15 Identities=13% Similarity=-0.292 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHH
Q 012143 91 PLKAVSSYEKAEEIL 105 (470)
Q Consensus 91 ~~~A~~~~~~al~~~ 105 (470)
.++|+.+..+|++.+
T Consensus 16 ~~~Ai~lv~~Ave~D 30 (83)
T 2w2u_A 16 EEMARKYAINAVKAD 30 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888887764
No 277
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=70.47 E-value=6.1 Score=26.67 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 439 ANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 439 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
..+|..+...|+++.|+.+|-+|+.++++
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45777777788888888888888877754
No 278
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.69 E-value=10 Score=25.21 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=11.9
Q ss_pred hHHHHHHHhccHHHHHHHHHHH
Q 012143 406 GESAFLDQASAVNVAKECLLAA 427 (470)
Q Consensus 406 ~l~~~~~~~~~~~~A~~~~~~a 427 (470)
..+..+...|+|++||++.+++
T Consensus 20 RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHH
Confidence 4455555555555555555544
No 279
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=69.35 E-value=34 Score=25.84 Aligned_cols=61 Identities=8% Similarity=0.059 Sum_probs=42.1
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCc---HHHH---HH---HHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 406 GESAFLDQASAVNVAKECLLAALKADPKA---AHIW---AN---LANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 406 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~---~~---la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.-|..++..|+|=+|=+.++.+....+.. ...| .. .|..+.+.|+..-|...+.+++..+.
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34446677788888888888888765443 2222 22 33345678999999999999988764
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.98 E-value=30 Score=35.31 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=63.8
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
+...+.++-+. ..+..-|.++..-|.+|.++...|++++|..+|++|-.-...+.
T Consensus 820 L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~--------------------- 874 (950)
T 4gq2_M 820 LFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT--------------------- 874 (950)
T ss_dssp HHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSC---------------------
T ss_pred HHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCc---------------------
Confidence 44455554433 34455677877788899999999999999999987632100000
Q ss_pred ccccCCCccccccCcccH-HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-CCCCh
Q 012143 131 PESSGDNSLDKELEPEEL-EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNNC 200 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~ 200 (470)
..... ......+. ..+........|.....++...+-++-++...+.|++. .++++
T Consensus 875 -------------~~~~~~~~~~~ll~-~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 875 -------------SQFAVLREFQEIAE-KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp -------------CSCGGGHHHHHHHH-HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred -------------ccccchhhhhhccC-cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 00000 11111111 11111222346667888888888888888888888864 34443
No 281
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=68.87 E-value=5.9 Score=26.08 Aligned_cols=14 Identities=14% Similarity=-0.398 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHH
Q 012143 92 LKAVSSYEKAEEIL 105 (470)
Q Consensus 92 ~~A~~~~~~al~~~ 105 (470)
++|+.+..+|++.+
T Consensus 9 ~~Ai~lv~~Ave~D 22 (83)
T 2v6y_A 9 DMARKYAILAVKAD 22 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47888888888764
No 282
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=64.95 E-value=8.4 Score=24.90 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=12.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 440 NLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 440 ~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
.+|+=|...|+|+.|+.+|+.+++.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3444444455555555555544443
No 283
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=64.86 E-value=9.9 Score=25.20 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=15.5
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHHh
Q 012143 405 AGESAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 405 ~~l~~~~~~~~~~~~A~~~~~~al~ 429 (470)
...|.-.-..|++++|+.+|..+++
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455566667777777776655
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=63.40 E-value=46 Score=25.14 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hH---HHHH---HHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CD---CIGN---LGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~---~~~~---la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
-+.-|..++..|+|-+|-++++.+....+.. .. .+.+ .|....+.|+..-|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3556777888899999999999999876554 22 2223 334556789999999999999863
No 285
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=62.81 E-value=15 Score=24.45 Aligned_cols=30 Identities=23% Similarity=0.088 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
+..+-.++..+...|+|++||++.+++...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345667888999999999999999999865
No 286
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=62.15 E-value=16 Score=24.01 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=8.2
Q ss_pred HcCChHHHHHHHHHHHHh
Q 012143 447 LTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 447 ~~g~~~~A~~~~~~al~~ 464 (470)
..|++++|+.+|.++++.
T Consensus 31 ~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 344444444444444443
No 287
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=62.03 E-value=20 Score=28.47 Aligned_cols=35 Identities=9% Similarity=-0.039 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 200 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 200 (470)
....+.+|.+++..++|.+|.+.+..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 34566778888888888888888888888776553
No 288
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=59.50 E-value=14 Score=24.18 Aligned_cols=18 Identities=22% Similarity=0.052 Sum_probs=8.0
Q ss_pred HHHHhccHHHHHHHHHHH
Q 012143 410 FLDQASAVNVAKECLLAA 427 (470)
Q Consensus 410 ~~~~~~~~~~A~~~~~~a 427 (470)
-.-..|++++|+.+|..+
T Consensus 20 e~D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 20 KADKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHH
Confidence 334444444444444444
No 289
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=59.18 E-value=35 Score=31.08 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=65.3
Q ss_pred CcccHHHHHHHHHHhhhcCcc------------chH----HHHHHHHHHHHcCChHHHHHHHHHHhhcCC--C-------
Q 012143 144 EPEELEEILSKLKESMQSDTR------------QAV----VWNTLGLILLKSGRLQSSISVLSSLLAVDP--N------- 198 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~------------~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~------- 198 (470)
+....+++...+.++....-. .-. ....+-.+|++.|+..-+...++..-...+ .
T Consensus 138 ~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~ 217 (455)
T 3t5v_B 138 SHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLD 217 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHH
T ss_pred chhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCcc
Confidence 345678888888888664211 111 123456789999999999998876543322 1
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 012143 199 -NCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNH 233 (470)
Q Consensus 199 -~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~ 233 (470)
-...++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 1346889999999999999999999999998 7765
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=57.59 E-value=31 Score=27.35 Aligned_cols=42 Identities=7% Similarity=-0.039 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
....+.+|.+++..++|.+|.+.+..|+...|..........
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~I 55 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMI 55 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHH
Confidence 346789999999999999999999999999887654433333
No 291
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=56.71 E-value=54 Score=24.60 Aligned_cols=81 Identities=6% Similarity=-0.055 Sum_probs=46.1
Q ss_pred HHHHhccccHHHHHHHHHH-HhcchhhhhHhhHHHHHHHhccHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 012143 376 AAVQKTHHEVAAAFETEEN-ELSKMEECAGAGESAFLDQASAVN-VAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
+...+-..+|...+..+.. .....|....+.+|.+|.+...+. +..+..-..+.+.. +--+.+-|+|...|++++
T Consensus 15 a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkS---de~yL~YWIyiGRg~~~e 91 (161)
T 2ynq_A 15 STELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKT---DEQYMLYWIYIGRSQSEE 91 (161)
T ss_dssp HHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTS---CHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccC---CHHHHHHHHHHcCCchHH
Confidence 4444556677777777666 444566677777777777766543 22222222222222 123444566667778777
Q ss_pred HHHHHH
Q 012143 454 SGKCLE 459 (470)
Q Consensus 454 A~~~~~ 459 (470)
|+..-+
T Consensus 92 AlDiA~ 97 (161)
T 2ynq_A 92 ALELAR 97 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776644
No 292
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=52.96 E-value=22 Score=22.98 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 012143 78 HFLLGLMYQRLGQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 105 (470)
...+|+-|...|+|+.|+.+|+.++..-
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI 42 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQM 42 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4568999999999999999999999863
No 293
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=50.59 E-value=24 Score=23.77 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=10.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHH
Q 012143 407 ESAFLDQASAVNVAKECLLAAL 428 (470)
Q Consensus 407 l~~~~~~~~~~~~A~~~~~~al 428 (470)
.|.-.-..|+|++|+.+|..++
T Consensus 21 ~Ave~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 21 RAVELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3333444445555555555443
No 294
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=50.50 E-value=23 Score=32.32 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 435 AHIWANLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 435 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
....|.+|.++...+++.+|.+++..|+..
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 345566666666666666666666666665
No 295
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=50.42 E-value=30 Score=22.67 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=11.0
Q ss_pred HHHHHHHhccHHHHHHHHHHHHh
Q 012143 407 ESAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 407 l~~~~~~~~~~~~A~~~~~~al~ 429 (470)
.|.-.-..|++++|+.+|..+++
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444555555555555443
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.32 E-value=92 Score=24.56 Aligned_cols=47 Identities=6% Similarity=-0.035 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 417 VNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 417 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
..++...|.-.... .-..+..|...|..+...|++.+|...|+.+++
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444432 233455555555555555666666555555554
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.56 E-value=1e+02 Score=24.80 Aligned_cols=65 Identities=11% Similarity=0.158 Sum_probs=40.1
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+|....+|...+.. .+++..+|.-+.. +....+..|...|..+...|++.+|..+|+..++..-.
T Consensus 116 D~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 116 DVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 33444455555542 1345555555443 34556677777777788888888888888888776543
No 298
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=49.17 E-value=84 Score=27.34 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHcC--ChHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 166 AVVWNTLGLILLKSG--RLQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
|-++-+||++-...- ....++..|.+++.. .....-.|..+|-.+++.+++.+|+..+..+-.
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 344445555443321 122366777777654 334456788899999999999999999988754
No 299
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=49.07 E-value=58 Score=21.90 Aligned_cols=58 Identities=16% Similarity=-0.125 Sum_probs=39.6
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcH----HHH--HHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 407 ESAFLDQASAVNVAKECLLAALKADPKAA----HIW--ANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 407 l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.|..++..|+|=+|=+.++..-...|+.. ..+ ...|......|+. |...+.+++..+.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~ 70 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLE 70 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHT
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 34466677888888888888887775431 122 2334445567888 9999999988764
No 300
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.62 E-value=18 Score=25.64 Aligned_cols=13 Identities=31% Similarity=0.210 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHH
Q 012143 92 LKAVSSYEKAEEI 104 (470)
Q Consensus 92 ~~A~~~~~~al~~ 104 (470)
+.|+.++.+|++.
T Consensus 16 ~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 16 QKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555544
No 301
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=46.38 E-value=33 Score=24.30 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=13.1
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHh
Q 012143 406 GESAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 406 ~l~~~~~~~~~~~~A~~~~~~al~ 429 (470)
..|.-.-..|+|++|+.+|..+++
T Consensus 23 ~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 23 SKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444455666666666666544
No 302
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=44.45 E-value=67 Score=27.94 Aligned_cols=25 Identities=8% Similarity=-0.086 Sum_probs=12.4
Q ss_pred hHhhHHHHHHHhccHHHHHHHHHHH
Q 012143 403 AGAGESAFLDQASAVNVAKECLLAA 427 (470)
Q Consensus 403 ~~~~l~~~~~~~~~~~~A~~~~~~a 427 (470)
++..+|..+.+.+++.+|+..+..+
T Consensus 298 PYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 298 PYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhhhhhhhhcchHHHHHHHHHHH
Confidence 3444555555555555555544443
No 303
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.15 E-value=21 Score=25.08 Aligned_cols=15 Identities=13% Similarity=0.076 Sum_probs=8.0
Q ss_pred hccHHHHHHHHHHHH
Q 012143 414 ASAVNVAKECLLAAL 428 (470)
Q Consensus 414 ~~~~~~A~~~~~~al 428 (470)
.|+.+.|+.+|++.+
T Consensus 35 ~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGI 49 (116)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555555444
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.66 E-value=1.2e+02 Score=24.27 Aligned_cols=35 Identities=6% Similarity=0.056 Sum_probs=18.1
Q ss_pred hcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhc
Q 012143 396 LSKMEECAGAGESAFLDQASAVNVAKECLLAALKA 430 (470)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 430 (470)
+...-...|...|..+...|++.+|..+|+..++.
T Consensus 145 IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 145 IGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp CSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33333344445555555555555555555555554
No 305
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=40.32 E-value=85 Score=27.90 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
..|..+|-.+++.+++.+|+..+-.+-...
T Consensus 319 YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi 348 (550)
T 3u84_A 319 YPYMYLAGYHCRNRNVREALQAWADTATVI 348 (550)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cceeecchhhhhcchHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 306
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=39.97 E-value=83 Score=21.12 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 205 NLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
..|..++..|+|-+|-+.++......|.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 4566677778888888888888876654
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.76 E-value=1.2e+02 Score=22.94 Aligned_cols=37 Identities=3% Similarity=-0.104 Sum_probs=21.5
Q ss_pred HhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC
Q 012143 395 ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 431 (470)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 431 (470)
.+...-...|...|..+...|++.+|..+|+..++..
T Consensus 90 ~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 90 GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3344444455555666666666666666666666654
No 308
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=37.95 E-value=1.5e+02 Score=26.47 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhc-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 184 SSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 184 ~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.++..|.+++.. .....-.|..+|-.+++.+++.+|+..+..+-.
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 356666666653 233455688899999999999999999987754
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.39 E-value=1.4e+02 Score=22.53 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=35.3
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
|....+|...+... + ++..+|..+.. +....+..|...|..+...|++.+|.++|+..++...
T Consensus 63 ~RyLklWl~ya~~~---~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 63 PRFLNLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 33344555544432 2 24444444433 3445566666667777777777777777777776543
No 310
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=34.87 E-value=1.8e+02 Score=25.99 Aligned_cols=63 Identities=6% Similarity=-0.010 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHcCC--hHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 166 AVVWNTLGLILLKSGR--LQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
|-++.+||.+-.-.-. ...++..|++++.. .....-.|..+|-.+.+.+++.+|+..+..+-.
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 4556666666543322 23467778877764 334456788889999999999999999988754
No 311
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=33.39 E-value=64 Score=31.21 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 214 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 214 (470)
....|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4445666666777777777777777777777777666666666554
No 312
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=32.93 E-value=1.1e+02 Score=20.44 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=27.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
.....|.-....|++++|+..| .+|+++|..++...|+..
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y-------------------------~~Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCY-------------------------QEGIDMLLQVLKGTKESS 56 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-------------------------HHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH-------------------------HHHHHHHHHHHHHCCCHH
Confidence 3445555666778888887774 678888888888776543
No 313
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.76 E-value=47 Score=23.32 Aligned_cols=16 Identities=19% Similarity=-0.155 Sum_probs=11.9
Q ss_pred ChhHHHHHHHHHHHHH
Q 012143 90 QPLKAVSSYEKAEEIL 105 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~ 105 (470)
.+++|..+..++|.++
T Consensus 18 ~h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4567888888888775
No 314
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.57 E-value=1.8e+02 Score=24.85 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 012143 78 HFLLGLMYQRLGQPLKAVSSYEKAEEILL 106 (470)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 106 (470)
....|.-+...|++.+|+..|+.++..-|
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 35668888999999999999999998754
No 315
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.65 E-value=2.7e+02 Score=23.90 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILL 106 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~ 106 (470)
...|.-+...|++.+|+..|+.++..-|
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 4568888999999999999999998754
No 316
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.31 E-value=1.2e+02 Score=19.86 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=27.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 372 WAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
....+.-....|++++|+..| .+|++.|..++...|+.
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY-------------------------~~Aie~ll~alk~e~d~ 56 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCY-------------------------QEGIDLLLQVLKGTKDN 56 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH-------------------------HHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHH-------------------------HHHHHHHHHHHhhCCCH
Confidence 445555667788888888875 56778888888776654
No 317
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=29.30 E-value=1.3e+02 Score=27.35 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 434 AAHIWANLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 434 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
...++..+|++|...|++++|..+.++++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3567888999999999999999999999864
No 318
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.60 E-value=2.3e+02 Score=22.55 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcCccchH--------HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAV--------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 219 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (470)
++.|+..++.+-...+-... +-...-.+++..|.|++|.+.+++.+..+|.+......|..+-....-+..-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~ 167 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPV 167 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHH
Q ss_pred HHHH
Q 012143 220 AKCF 223 (470)
Q Consensus 220 ~~~~ 223 (470)
++.|
T Consensus 168 lqnF 171 (235)
T 3bu8_A 168 IQNF 171 (235)
T ss_dssp HHTC
T ss_pred HHhc
No 319
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=26.90 E-value=1.4e+02 Score=27.18 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 433 KAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 433 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
+...++..+|++|...|++++|....++++..
T Consensus 194 tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 194 NRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33567888999999999999999999998864
No 320
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.42 E-value=97 Score=29.95 Aligned_cols=49 Identities=12% Similarity=-0.048 Sum_probs=42.0
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 012143 404 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 452 (470)
Q Consensus 404 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 452 (470)
....|......|+|.-|.+....++..+|++..+...++.+|.++|...
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 3455667778899999999999999999999999999999998887433
No 321
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=26.36 E-value=1.6e+02 Score=27.01 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 434 AAHIWANLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 434 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
...++..+|++|...|++++|..+.++++..
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3567889999999999999999999999864
No 322
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.88 E-value=1.8e+02 Score=25.95 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
..|..+|-.+.+.+++.+|+..+..+-...
T Consensus 304 YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi 333 (489)
T 4gq4_A 304 YPYMYLAGYHCRNRNVREALQAWADTATVI 333 (489)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cceeecchHHHHhhhHHHHHHHhhhhhhhh
Confidence 334444444444444444444444444433
No 323
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=25.38 E-value=1.7e+02 Score=27.04 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 434 AAHIWANLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 434 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
...++..+|++|...|++++|..+.++++..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3567788899999999999999999888865
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.87 E-value=4e+02 Score=24.34 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=11.3
Q ss_pred HHHHHHHhCChhHHHHHHHHHH
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAE 102 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al 102 (470)
+|.-....+++..|..+|.+-.
T Consensus 347 lA~~lA~R~~LpGAd~L~~~~F 368 (494)
T 1bpo_A 347 LALRMAVRNNLAGAEELFARKF 368 (494)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHH
Confidence 4444445555555555555443
No 325
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=24.04 E-value=3.1e+02 Score=22.67 Aligned_cols=149 Identities=9% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCC-------------------hHHHHHHHHHHHH-----cCCHHHHHHHHH
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------------------CDCIGNLGIAYFQ-----SGDMEQSAKCFQ 224 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------------~~~~~~la~~~~~-----~g~~~~A~~~~~ 224 (470)
+..++.+..+.++|++.+.+.+++.+.++.. ...|..+..+-.+ .......++.|+
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i~~yr 113 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 113 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHHHHHH
Q ss_pred HHH--hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH----------HHHHHHHHHHHhc--------
Q 012143 225 DLI--LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV----------NVAKECLLAALKA-------- 284 (470)
Q Consensus 225 ~~l--~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~-------- 284 (470)
+-+ ++..-.......+-..+...........-.+-..|+.|.-.-.+ +.|...|+.|..+
T Consensus 114 ~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pT 193 (261)
T 3ubw_A 114 QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPT 193 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q ss_pred CCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHh
Q 012143 285 DPKAAHIWANLANAYYL-TGDHRSSGKCLEKAAK 317 (470)
Q Consensus 285 ~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~ 317 (470)
+|-......+.+..|+. +++.++|...-++++.
T Consensus 194 hPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 194 HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 326
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.58 E-value=1.2e+02 Score=23.82 Aligned_cols=39 Identities=8% Similarity=0.210 Sum_probs=20.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
...++.+.|.+++|.+.+++.+..++++......|..+.
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344566677777777777777666655555554444443
No 327
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.55 E-value=3e+02 Score=22.48 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHH-HHcCChHHHHHHHHHHHHh
Q 012143 417 VNVAKECLLAALK-----ADPKAAH---IWANLANAY-YLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 417 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~ 464 (470)
.+.|...|+.|.+ +.|.+|- ...+.+..| .-++++++|...-++|++-
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3667777777764 5677763 233444444 4589999998887777653
No 328
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=23.43 E-value=1.5e+02 Score=26.93 Aligned_cols=48 Identities=17% Similarity=0.070 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHhCCC--------ChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 57 VSSLKTGLVHVARKMPK--------NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
++..+..++.++..-|. ...++..+|++|+..|++++|+...++++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 44555556666554443 2448889999999999999999999999975
No 329
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=23.03 E-value=81 Score=28.85 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLA 194 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 194 (470)
.++..+|.+|+..++|++|....++++.
T Consensus 192 aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 192 VVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3555566666666666666666666664
No 330
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=22.40 E-value=3.1e+02 Score=22.18 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHH-HHcCChHHHHHHHHHHHHh
Q 012143 417 VNVAKECLLAALK-----ADPKAAH---IWANLANAY-YLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 417 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~ 464 (470)
.+.|...|+.|++ +.|.+|- ...+.+..| .-+|++++|...-++++.-
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3577778888774 5677763 233444444 4589999998887777653
No 331
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=22.04 E-value=1.6e+02 Score=26.78 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHhCCC--------ChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 57 VSSLKTGLVHVARKMPK--------NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
++..+..++.++..-|. ...++..+|++|+..|++++|+...++++..
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34455555555554343 2458899999999999999999999999875
No 332
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=21.99 E-value=3.2e+02 Score=22.16 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHH-HHcCChHHHHHHHHHHHH
Q 012143 417 VNVAKECLLAALK-----ADPKAAH---IWANLANAY-YLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 417 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~ 463 (470)
.+.|...|+.|.+ +.|.+|- ...+.+..| .-++++++|...-++|++
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667777777764 5677763 233444444 467999999887777664
No 333
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.69 E-value=85 Score=24.58 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhcCccchH-----HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC
Q 012143 148 LEEILSKLKESMQSDTRQAV-----VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 214 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 214 (470)
++.|+..++.+-...+.-.+ +-...-.+++..|.+++|.+.+++....++.+......|..+-....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 45566666555443331111 12233457889999999999999999988777666666655544433
No 334
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=20.54 E-value=2.2e+02 Score=26.30 Aligned_cols=48 Identities=17% Similarity=-0.019 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHhCCC-----------ChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 57 VSSLKTGLVHVARKMPK-----------NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
++..++.++.++..-|. ...++..+|++|+..|++++|+...++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34445555555554432 2348889999999999999999999999874
Done!