BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012145
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
Length = 324
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 125/282 (44%), Gaps = 35/282 (12%)
Query: 64 SCIFTQQGRKGINQDAMIVWEDFMS--EDVTFCGVFDGHGPHGHLVARRVRDALPIKLLS 121
+ IFT G + +D + + +D F GVFDG G + V+D + +L+S
Sbjct: 24 AAIFTDIGGRKHQEDRFTLCPQLVPGRDDCAFFGVFDGTV--GDFASENVKDLVVPQLIS 81
Query: 122 FLLASQSRQNGPGKTCFNGNTKKLEAGDSEKDGPA---EDKSNSLWREAYLKAYKSMDKE 178
+ T+ L + D PA ++K L +A YK+ D E
Sbjct: 82 -------------SPAWQEVTEXLRS-----DVPATEVDEKLPQLLDQAVDDXYKNADNE 123
Query: 179 L-KSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPD 237
L K L+ + ST+VT V + +G++GDSR G + N LTVD KPD
Sbjct: 124 LVKXCEQLNKDYASSTSVTAVLAKGFVAVGHLGDSRIAXGVETPNGLNCEF-LTVDHKPD 182
Query: 238 LPREAERIKRCKGRVFALQDEPEVPRVW---LPFDDAPG-----LAMARAFGDFCLKEYG 289
P E RI R G V L + P + F + G L +RAFG LK YG
Sbjct: 183 XPHEKLRIXRNGGSVEYLHNHNNKPFIRGGDFSFRKSRGEQPXQLQYSRAFGGKDLKXYG 242
Query: 290 VISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSSA 331
+ + P+ +T + + +LA+DG+WDV S + VEI A
Sbjct: 243 LSNQPDVRVVRVTPQHRVXILATDGLWDVXSAAQAVEIAXQA 284
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 113/248 (45%), Gaps = 52/248 (20%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG GH VA RD L F LA + + K G+ +
Sbjct: 67 FFGVYDGHG--GHKVADYCRDRL-----HFALAEEIER-------IKDELSKRNTGEGRQ 112
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELK----------SHPNLDCFCS---GSTAVTIVK 199
W + + + ++D E++ S L+ S GSTAV +
Sbjct: 113 ---------VQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALV 163
Query: 200 QGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEP 259
S++ + GDSRAV+ A+ L+VD KPD E RI+ G+V Q
Sbjct: 164 CSSHIVVSNCGDSRAVLFRGKE-----AMPLSVDHKPDREDEYARIENAGGKVIQWQG-- 216
Query: 260 EVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVL 319
RV+ LAM+R+ GD LK Y VI PE + + D+ ++LASDG+WDV+
Sbjct: 217 --ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVM 267
Query: 320 SNEEVVEI 327
+N+EV EI
Sbjct: 268 NNQEVCEI 275
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 113/248 (45%), Gaps = 52/248 (20%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG GH VA RD L F LA + + K G+ +
Sbjct: 70 FFGVYDGHG--GHKVADYCRDRL-----HFALAEEIER-------IKDELCKRNTGEGRQ 115
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELK----------SHPNLDCFCS---GSTAVTIVK 199
W + + + ++D E++ S L+ S GSTAV +
Sbjct: 116 ---------VQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALV 166
Query: 200 QGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEP 259
S++ + GDSRAV+ A+ L+VD KPD E RI+ G+V Q
Sbjct: 167 CSSHIVVSNCGDSRAVLFRGKE-----AMPLSVDHKPDREDEYARIENAGGKVIQWQG-- 219
Query: 260 EVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVL 319
RV+ LAM+R+ GD LK Y VI PE + + D+ ++LASDG+WDV+
Sbjct: 220 --ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVM 270
Query: 320 SNEEVVEI 327
+N+EV EI
Sbjct: 271 NNQEVCEI 278
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 113/248 (45%), Gaps = 52/248 (20%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG GH VA RD L F LA + + K G+ +
Sbjct: 53 FFGVYDGHG--GHKVADYCRDRL-----HFALAEEIER-------IKDELCKRNTGEGRQ 98
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELK----------SHPNLDCFCS---GSTAVTIVK 199
W + + + ++D E++ S L+ S GSTAV +
Sbjct: 99 ---------VQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALV 149
Query: 200 QGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEP 259
S++ + GDSRAV+ A+ L+VD KPD E RI+ G+V Q
Sbjct: 150 CSSHIVVSNCGDSRAVLFRGKE-----AMPLSVDHKPDREDEYARIENAGGKVIQWQG-- 202
Query: 260 EVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVL 319
RV+ LAM+R+ GD LK Y VI PE + + D+ ++LASDG+WDV+
Sbjct: 203 --ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVM 253
Query: 320 SNEEVVEI 327
+N+EV EI
Sbjct: 254 NNQEVCEI 261
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 113/248 (45%), Gaps = 52/248 (20%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG GH VA RD L F LA + + K G+ +
Sbjct: 64 FFGVYDGHG--GHKVADYCRDRL-----HFALAEEIER-------IKDELCKRNTGEGRQ 109
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELK----------SHPNLDCFCS---GSTAVTIVK 199
W + + + ++D E++ S L+ S GSTAV +
Sbjct: 110 ---------VQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALV 160
Query: 200 QGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEP 259
S++ + GDSRAV+ A+ L+VD KPD E RI+ G+V Q
Sbjct: 161 CSSHIVVSNCGDSRAVLFRGKE-----AMPLSVDHKPDREDEYARIENAGGKVIQWQG-- 213
Query: 260 EVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVL 319
RV+ LAM+R+ GD LK Y VI PE + + D+ ++LASDG+WDV+
Sbjct: 214 --ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVM 264
Query: 320 SNEEVVEI 327
+N+EV EI
Sbjct: 265 NNQEVCEI 272
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 113/248 (45%), Gaps = 52/248 (20%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG GH VA RD L F LA + + K G+ +
Sbjct: 68 FFGVYDGHG--GHKVADYCRDRL-----HFALAEEIER-------IKDELCKRNTGEGRQ 113
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELK----------SHPNLDCFCS---GSTAVTIVK 199
W + + + ++D E++ S L+ S GSTAV +
Sbjct: 114 ---------VQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALV 164
Query: 200 QGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEP 259
S++ + GDSRAV+ A+ L+VD KPD E RI+ G+V Q
Sbjct: 165 CSSHIVVSNCGDSRAVLFRGKE-----AMPLSVDHKPDREDEYARIENAGGKVIQWQG-- 217
Query: 260 EVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVL 319
RV+ LAM+R+ GD LK Y VI PE + + D+ ++LASDG+WDV+
Sbjct: 218 --ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVM 268
Query: 320 SNEEVVEI 327
+N+EV EI
Sbjct: 269 NNQEVCEI 276
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 113/248 (45%), Gaps = 52/248 (20%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG GH VA RD L F LA + + K G+ +
Sbjct: 77 FFGVYDGHG--GHKVADYCRDRL-----HFALAEEIER-------IKDELCKRNTGEGRQ 122
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELK----------SHPNLDCFCS---GSTAVTIVK 199
W + + + ++D E++ S L+ S GSTAV +
Sbjct: 123 ---------VQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALV 173
Query: 200 QGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEP 259
S++ + GDSRAV+ A+ L+VD KPD E RI+ G+V Q
Sbjct: 174 CSSHIVVSNCGDSRAVLFRGKE-----AMPLSVDHKPDREDEYARIENAGGKVIQWQG-- 226
Query: 260 EVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVL 319
RV+ LAM+R+ GD LK Y VI PE + + D+ ++LASDG+WDV+
Sbjct: 227 --ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVM 277
Query: 320 SNEEVVEI 327
+N+EV EI
Sbjct: 278 NNQEVCEI 285
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 28/216 (12%)
Query: 155 PAEDKSNSLWREAYLKAYKSMDKELKSHPNLDC----FCSGSTA-VTIVKQGSNLFMGYI 209
P E +L A+L+ +DK SH L SG+TA V +++ G L + +
Sbjct: 66 PKEKNLETLLTLAFLE----IDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASV 121
Query: 210 GDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFD 269
GDSRA++ K ++LT+D P+ E ERIK+C G F + P V
Sbjct: 122 GDSRAILCRKGK-----PMKLTIDHTPERKDEKERIKKCGG--FVAWNSLGQPHV----- 169
Query: 270 DAPGLAMARAFGDFCLKEYGVISIPEFSH-RLLTDRDQFIVLASDGVWDVLSNEEVVEIV 328
LAM R+ GD LK GVI+ PE +L D F+VL +DG+ +++++E+ + V
Sbjct: 170 -NGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFV 228
Query: 329 SSAPTRSSAARILVDAAAREWKLKYPTSKMDDCAVV 364
+ + AA A E ++Y T VV
Sbjct: 229 NQCHDPNEAAH-----AVTEQAIQYGTEDNSTAVVV 259
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 111/235 (47%), Gaps = 45/235 (19%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG G VA R+ + + L A + + P L GD+
Sbjct: 54 FFGVYDGHG--GSQVANYCRERMHLAL-----AEEIAKEKP----------MLSDGDTWL 96
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDS 212
+ W++A ++ +D E++S + GST+V V S++F+ GDS
Sbjct: 97 EK---------WKKALFNSFLRVDSEIES---VAPETVGSTSVVAVVFPSHIFVANCGDS 144
Query: 213 RAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAP 272
RAV+ + A+ L+VD KPD EA RI+ G+V RV+
Sbjct: 145 RAVLCRGKT-----ALPLSVDHKPDREDEAARIEAAGGKVIQWNGA----RVF------G 189
Query: 273 GLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 327
LAM+R+ GD LK +I PE + D ++LASDGVWDV+++EE E+
Sbjct: 190 VLAMSRSIGDRYLKP-SIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEM 243
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 28/216 (12%)
Query: 155 PAEDKSNSLWREAYLKAYKSMDKELKSHPNLDC----FCSGSTA-VTIVKQGSNLFMGYI 209
P E +L A+L+ +DK SH L SG+TA V +++ G L + +
Sbjct: 180 PKEKNLETLLTLAFLE----IDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASV 235
Query: 210 GDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFD 269
GDSRA++ K ++LT+D P+ E ERIK+C G F + P V
Sbjct: 236 GDSRAILCRKGK-----PMKLTIDHTPERKDEKERIKKCGG--FVAWNSLGQPHV----- 283
Query: 270 DAPGLAMARAFGDFCLKEYGVISIPEFSH-RLLTDRDQFIVLASDGVWDVLSNEEVVEIV 328
LAM R+ GD LK GVI+ PE +L D F+VL +DG+ +++++E+ + V
Sbjct: 284 -NGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFV 342
Query: 329 SSAPTRSSAARILVDAAAREWKLKYPTSKMDDCAVV 364
+ + AA A E ++Y T VV
Sbjct: 343 NQCHDPNEAAH-----AVTEQAIQYGTEDNSTAVVV 373
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 112/235 (47%), Gaps = 45/235 (19%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG G VA R+ + + L A + + P +G+T LE
Sbjct: 57 FFGVYDGHG--GSQVANYCRERMHLAL-----AEEIAKEKP--MLCDGDTW-LEK----- 101
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDS 212
W++A ++ +D E++S + GST+V V S++F+ GDS
Sbjct: 102 -----------WKKALFNSFLRVDSEIES---VAPETVGSTSVVAVVFPSHIFVANCGDS 147
Query: 213 RAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAP 272
RAV+ + A+ L+VD KPD EA RI+ G+V RV+
Sbjct: 148 RAVLCRGKT-----ALPLSVDHKPDREDEAARIEAAGGKVIQWNG----ARVF------G 192
Query: 273 GLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 327
LAM+R+ GD LK +I PE + D ++LASDGVWDV+++EE E+
Sbjct: 193 VLAMSRSIGDRYLKP-SIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEM 246
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 109/235 (46%), Gaps = 45/235 (19%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG G VA R+ + LA + + P +G+T LE
Sbjct: 69 FFGVYDGHG--GSQVANYCRERM-----HLALAEEIAKEKP--MLCDGDTW-LEK----- 113
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDS 212
W++A ++ +D E++S + GST+V V S++F+ GDS
Sbjct: 114 -----------WKKALFNSFLRVDSEIES---VAPETVGSTSVVAVVFPSHIFVANCGDS 159
Query: 213 RAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAP 272
RAV+ + A+ L+VD KPD EA RI+ G+V W
Sbjct: 160 RAVLCRGKT-----ALPLSVDHKPDREDEAARIEAAGGKVIQ----------WNGARVFG 204
Query: 273 GLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 327
LAM+R+ GD LK +I PE + D ++LASDGVWDV+++EE E+
Sbjct: 205 VLAMSRSIGDRYLKP-SIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEM 258
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 43/235 (18%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG G VA R+ + + L ++ + + C
Sbjct: 61 FFGVYDGHG--GSQVANYCRERMHLALTEEIVKEKP------EFC--------------- 97
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDS 212
DG D W++A ++ +D E+++ + GST+V V +++F+ GDS
Sbjct: 98 DG---DTWQEKWKKALFNSFMRVDSEIETVAHAP-ETVGSTSVVAVVFPTHIFVANCGDS 153
Query: 213 RAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAP 272
RAV+ + + L+VD KPD EA RI+ G+V W
Sbjct: 154 RAVLCRGKT-----PLALSVDHKPDRDDEAARIEAAGGKVIR----------WNGARVFG 198
Query: 273 GLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 327
LAM+R+ GD LK VI PE + D ++LASDG+WDV++NEEV ++
Sbjct: 199 VLAMSRSIGDRYLKP-SVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDL 252
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 114/250 (45%), Gaps = 48/250 (19%)
Query: 89 EDVTFCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAG 148
ED +F V+DGH RV + LL + ++ + GK+ G+ +L
Sbjct: 53 EDWSFFAVYDGHA------GSRVANYCSTHLLEHITTNEDFR-AAGKS---GSALELSV- 101
Query: 149 DSEKDGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQGSNLFMGY 208
++ K+G ++ L + Y++ + + + SGSTAV ++ +++
Sbjct: 102 ENVKNGI---RTGFLKIDEYMRNFSDLRNGMDR--------SGSTAVGVMISPKHIYFIN 150
Query: 209 IGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPF 268
GDSRAV+ + V T D KP PRE ERI+ G V + RV
Sbjct: 151 CGDSRAVL----YRNGQVCFS-TQDHKPCNPREKERIQNAGGSVM-------IQRV---- 194
Query: 269 DDAPGLAMARAFGDFCLK--------EYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLS 320
LA++RA GD+ K E V PE L + D+FI+LA DG+WDV+S
Sbjct: 195 --NGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILAXDGIWDVMS 252
Query: 321 NEEVVEIVSS 330
NEE+ E V S
Sbjct: 253 NEELCEYVKS 262
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 120/272 (44%), Gaps = 52/272 (19%)
Query: 68 TQQGRKGINQDAMIVWEDFMSEDVTFCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQ 127
+ QG + +DA +F + +F V+DGHG G VA+ LP +FL +
Sbjct: 29 SMQGWRISQEDAHNCILNF-DDQCSFFAVYDGHG--GAEVAQYCSLHLP----TFLKTVE 81
Query: 128 SRQNGPGKTCFNGNTKKLEAGDSEKDGPAEDKSNSLWREAYLKAYKSMDKELK---SHPN 184
+ G+ F K+ G +L +E ++ K + + + P
Sbjct: 82 AY----GRKEFEKALKEAFLG----------FDATLLQEKVIEELKVLSGDSAGSDAEPG 127
Query: 185 LDCFCSGSTAVTIVKQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAER 244
D SG TAV + G +L++ GDSR V+ A++++ D KP+ E +R
Sbjct: 128 KD---SGCTAVVALLHGKDLYVANAGDSRCVVCRNGK-----ALEMSFDHKPEDTVEYQR 179
Query: 245 IKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLK--------EYGVISIPEF 296
I++ GRV L GL ++RA GD K E + ++P+
Sbjct: 180 IEKAGGRV------------TLDGRVNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDI 227
Query: 297 SHRLLTDRDQFIVLASDGVWDVLSNEEVVEIV 328
+ D+F+VLA DG+W+ +++E+VV+ V
Sbjct: 228 EKITVGPEDEFMVLACDGIWNFMTSEQVVQFV 259
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 55/210 (26%)
Query: 165 REAYLKAYKSMDKELKSH-----PN-------LDCFCSGSTAVTIVKQGSNLFMGYIGDS 212
+EA + A+K +D ++ PN L SG+TA G +L + GDS
Sbjct: 162 KEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDS 221
Query: 213 RAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIK--RCKGRVFALQDEPEVPRVWLPFDD 270
RA++G ++ + S A+ L+ D RE ER+K K ++ + + + +PF
Sbjct: 222 RAMLGVQEEDGSWSAVTLSNDHNAQNEREVERLKLEHPKNEAKSVVKQDRLLGLLMPF-- 279
Query: 271 APGLAMARAFGDFCLK--------------------EYG------------VISIPEFSH 298
RAFGD K EY + + PE ++
Sbjct: 280 -------RAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYYTPPYLTAEPEVTY 332
Query: 299 RLLTDRDQFIVLASDGVWDVLSNEEVVEIV 328
L +D+F+VLA+DG+W+ + ++VV IV
Sbjct: 333 HRLRPQDKFLVLATDGLWETMHRQDVVRIV 362
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 55/210 (26%)
Query: 165 REAYLKAYKSMDKELK-----SHPN-------LDCFCSGSTAVTIVKQGSNLFMGYIGDS 212
+EA + A+K +D ++ PN L SG+TA G +L + GDS
Sbjct: 162 KEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDS 221
Query: 213 RAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIK--RCKGRVFALQDEPEVPRVWLPFDD 270
RA++G ++ + S A+ L+ D RE +R+K K ++ + + + +PF
Sbjct: 222 RAMLGVQEEDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPF-- 279
Query: 271 APGLAMARAFGDFCLK--------------------EYG------------VISIPEFSH 298
RAFGD K EY + + PE ++
Sbjct: 280 -------RAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTY 332
Query: 299 RLLTDRDQFIVLASDGVWDVLSNEEVVEIV 328
L +D+F+VLA+DG+W+ + ++VV IV
Sbjct: 333 HRLRPQDKFLVLATDGLWETMHRQDVVRIV 362
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 190 SGSTAVTIVKQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCK 249
SGSTAV ++ + + GDSR ++ + V T D KP P E ERI+
Sbjct: 125 SGSTAVGVLISPQHTYFINCGDSRGLL----CRNRKVHF-FTQDHKPSNPLEKERIQNAG 179
Query: 250 GRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDF---CLKEYG----VISIPEFSHRL-- 300
G V + RV LA++RA GDF C+ G ++S H +
Sbjct: 180 GSVM-------IQRV------NGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIER 226
Query: 301 LTDRDQFIVLASDGVWDVLSNEEVVEIVSS 330
+ DQFI+LA DG+WDV+ NEE+ + V S
Sbjct: 227 SEEDDQFIILACDGIWDVMGNEELCDFVRS 256
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 71/150 (47%), Gaps = 27/150 (18%)
Query: 190 SGSTAVTIVKQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCK 249
SGSTAV ++ + + GDSR ++ + V T D KP P E ERI+
Sbjct: 125 SGSTAVGVLISPQHTYFINCGDSRGLL----CRNRKVHF-FTQDHKPSNPLEKERIQNAG 179
Query: 250 GRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDF---CLKEYG-----VISIPEFSHRLL 301
G V + RV LA++RA GDF C+ G V PE
Sbjct: 180 GSVM-------IQRV------NGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIER 226
Query: 302 TDRD-QFIVLASDGVWDVLSNEEVVEIVSS 330
++ D QFI+LA DG+WDV+ NEE+ + V S
Sbjct: 227 SEEDDQFIILACDGIWDVMGNEELCDFVRS 256
>pdb|2IRM|A Chain A, Crystal Structure Of Mitogen-Activated Protein Kinase
Kinase Kinase 7 Interacting Protein 1 From Anopheles
Gambiae
Length = 358
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 191 GSTAVTIVKQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKR 247
GS+AV + S+L++G IG+ RA++ D +D++ QL+VD EA R+ R
Sbjct: 154 GSSAVLALIHRSHLYLGNIGNCRALLCKTDEHDTLTVTQLSVDHNLLNAEEAARLFR 210
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 22/95 (23%)
Query: 209 IGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPF 268
IGDSRA + D + +L+ D KP+ P EA RI++ G V +VPRV
Sbjct: 180 IGDSRATLIHSDGGLT----RLSKDHKPNHPTEASRIEKAGGSVETF----DVPRV---- 227
Query: 269 DDAPGLAMARAFGDFCLK--------EYGVISIPE 295
D LA++RAFGD K E VI++P+
Sbjct: 228 DGV--LALSRAFGDSDFKXNPNLPPEEQKVIAVPD 260
>pdb|1OSB|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure.
pdb|1OSB|C Chain C, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure
Length = 293
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 11/137 (8%)
Query: 199 KQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDE 258
K+ L G IG+ +M S DS I L DL P+ G ++
Sbjct: 53 KRFRELLAGNIGEGHRIMRSATRQDSKERIGL--DLTFSAPKSVSLQALVAGDAEIIKAH 110
Query: 259 PEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRD-----QFIVL--- 310
L +A A + G ++ G + I +F H +RD ++L
Sbjct: 111 DRAVARTLEQAEARAQARQKIQGKTRIETTGNLVIGKFRHETSRERDPQLHTHAVILNMT 170
Query: 311 -ASDGVWDVLSNEEVVE 326
SDG W L N+E+V+
Sbjct: 171 KRSDGQWRALKNDEIVK 187
>pdb|2BNU|B Chain B, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNQ|E Chain E, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNR|E Chain E, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2F54|E Chain E, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
pdb|2F54|L Chain L, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
Length = 241
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 7/171 (4%)
Query: 95 GVFD-GHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEKD 153
G+ D G P+G+ V+R + P++LLS + S + + GNT +L G+ +
Sbjct: 51 GITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYF--CASSYVGNTGELFFGEGSRL 108
Query: 154 GPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSG----STAVTIVKQGSNLFMGYI 209
ED N E + + L C +G ++ G + G
Sbjct: 109 TVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVC 168
Query: 210 GDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPE 260
D + + NDS A+ + + ++ RC+ + + L + E
Sbjct: 169 TDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDE 219
>pdb|2F53|E Chain E, Directed Evolution Of Human T-Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Apparent Cross-Reactivity
Length = 243
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 6/166 (3%)
Query: 99 GHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEKDGPAED 158
G P+G+ V+R + P++LLS + S + + GNT +L G+ + ED
Sbjct: 58 GEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYF--CASSYVGNTGELFFGEGSRLTVLED 115
Query: 159 KSNSLWREAYLKAYKSMDKELKSHPNLDCFCSG----STAVTIVKQGSNLFMGYIGDSRA 214
N E + + L C +G ++ G + G D +
Sbjct: 116 LKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQP 175
Query: 215 VMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPE 260
+ NDS A+ + + ++ RC+ + + L + E
Sbjct: 176 LKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDE 221
>pdb|1BG1|A Chain A, Transcription Factor Stat3bDNA COMPLEX
Length = 596
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 26/122 (21%)
Query: 162 SLWREAYLKAYKSMDKE---LKSHPN--------------------LDCFCSGSTAVTIV 198
+LW E Y+ + S ++E L + P ++ SGST + V
Sbjct: 452 ALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSV 511
Query: 199 KQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDE 258
+ + + + + +MG K + + + + V L PD+P+E K C+ Q+
Sbjct: 512 EPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLYPDIPKEEAFGKYCRPES---QEH 568
Query: 259 PE 260
PE
Sbjct: 569 PE 570
>pdb|2PYF|B Chain B, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry
Unbound Tcr Clone 5-1
Length = 241
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 6/166 (3%)
Query: 99 GHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEKDGPAED 158
G P+G+ V+R + P++LLS + S + + GNT +L G+ + ED
Sbjct: 56 GEVPNGYNVSRSTIEDFPLRLLSAAPSQTSVYF--CASSYLGNTGELFFGEGSRLTVLED 113
Query: 159 KSNSLWREAYLKAYKSMDKELKSHPNLDCFCSG----STAVTIVKQGSNLFMGYIGDSRA 214
N E + + L C +G ++ G + G D +
Sbjct: 114 LKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQP 173
Query: 215 VMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPE 260
+ NDS A+ + + ++ RC+ + + L + E
Sbjct: 174 LKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDE 219
>pdb|2PYE|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry Tcr
Clone C5c1 Complexed With Mhc
Length = 242
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 6/166 (3%)
Query: 99 GHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEKDGPAED 158
G P+G+ V+R + P++LLS + S + + GNT +L G+ + ED
Sbjct: 57 GEVPNGYNVSRSTIEDFPLRLLSAAPSQTSVYF--CASSYLGNTGELFFGEGSRLTVLED 114
Query: 159 KSNSLWREAYLKAYKSMDKELKSHPNLDCFCSG----STAVTIVKQGSNLFMGYIGDSRA 214
N E + + L C +G ++ G + G D +
Sbjct: 115 LKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQP 174
Query: 215 VMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPE 260
+ NDS A+ + + ++ RC+ + + L + E
Sbjct: 175 LKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDE 220
>pdb|2P5W|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Reveal Native Diagonal Binding Geometry
Length = 243
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 6/166 (3%)
Query: 99 GHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEKDGPAED 158
G P+G+ V+R + P++LLS + S + + GNT +L G+ + ED
Sbjct: 57 GEVPNGYNVSRSTIEDFPLRLLSAAPSQTSVYF--CASSYLGNTGELFFGEGSRLTVLED 114
Query: 159 KSNSLWREAYLKAYKSMDKELKSHPNLDCFCSG----STAVTIVKQGSNLFMGYIGDSRA 214
N E + + L C +G ++ G + G D +
Sbjct: 115 LKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQP 174
Query: 215 VMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPE 260
+ NDS A+ + + ++ RC+ + + L + E
Sbjct: 175 LKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDE 220
>pdb|2P5E|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Reveal Native Diagonal Binding Geometry
Length = 242
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 6/166 (3%)
Query: 99 GHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEKDGPAED 158
G P+G+ V+R + P++LLS + S + + GNT +L G+ + ED
Sbjct: 56 GEVPNGYNVSRSTIEDFPLRLLSAAPSQTSVYF--CASSYLGNTGELFFGEGSRLTVLED 113
Query: 159 KSNSLWREAYLKAYKSMDKELKSHPNLDCFCSG----STAVTIVKQGSNLFMGYIGDSRA 214
N E + + L C +G ++ G + G D +
Sbjct: 114 LKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQP 173
Query: 215 VMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPE 260
+ NDS A+ + + ++ RC+ + + L + E
Sbjct: 174 LKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDE 219
>pdb|1OMH|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure.
pdb|1QX0|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Bound Structure
pdb|1S6M|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Bound Structure
pdb|1ZM5|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna,
Cooper- Bound Structure
Length = 293
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 11/137 (8%)
Query: 199 KQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDE 258
K+ L G IG+ + S DS I L DL P+ G ++
Sbjct: 53 KRFRELLAGNIGEGHRIXRSATRQDSKERIGL--DLTFSAPKSVSLQALVAGDAEIIKAH 110
Query: 259 PEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRD-----QFIVL--- 310
L +A A + G ++ G + I +F H +RD ++L
Sbjct: 111 DRAVARTLEQAEARAQARQKIQGKTRIETTGNLVIGKFRHETSRERDPQLHTHAVILNXT 170
Query: 311 -ASDGVWDVLSNEEVVE 326
SDG W L N+E+V+
Sbjct: 171 KRSDGQWRALKNDEIVK 187
>pdb|2CDM|A Chain A, The Structure Of Trwc Complexed With A 27-Mer Dna
Comprising The Recognition Hairpin And The Cleavage Site
pdb|2CDM|C Chain C, The Structure Of Trwc Complexed With A 27-Mer Dna
Comprising The Recognition Hairpin And The Cleavage Site
Length = 293
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 11/137 (8%)
Query: 199 KQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDE 258
K+ L G IG+ + S DS I L DL P+ G ++
Sbjct: 53 KRFRELLAGNIGEGHRIXRSATRQDSKERIGL--DLTFSAPKSVSLQALVAGDAEIIKAH 110
Query: 259 PEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRD-----QFIVL--- 310
L +A A + G ++ G + I +F H +RD ++L
Sbjct: 111 DRAVARTLEQAEARAQARQKIQGKTRIETTGNLVIGKFRHETSRERDPQLHTHAVILNXT 170
Query: 311 -ASDGVWDVLSNEEVVE 326
SDG W L N+E+V+
Sbjct: 171 KRSDGQWRALKNDEIVK 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,674,981
Number of Sequences: 62578
Number of extensions: 629488
Number of successful extensions: 1264
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1189
Number of HSP's gapped (non-prelim): 39
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)