Query 012148
Match_columns 470
No_of_seqs 129 out of 745
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 03:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m2o_A SEC23, protein transpor 100.0 2.2E-91 7.4E-96 773.0 34.1 437 2-468 1-464 (768)
2 2nut_A Protein transport prote 100.0 2.2E-90 7.7E-95 764.3 36.2 438 1-468 5-469 (769)
3 3eh1_A Protein transport prote 100.0 5E-84 1.7E-88 709.9 35.0 398 5-469 35-452 (751)
4 1pcx_A Protein transport prote 100.0 9.9E-83 3.4E-87 706.1 30.8 409 6-469 59-487 (810)
5 3eh2_A Protein transport prote 100.0 7E-83 2.4E-87 702.9 29.4 408 6-469 39-470 (766)
6 3efo_B SEC24 related gene fami 100.0 2E-82 6.8E-87 699.6 31.3 408 6-469 43-474 (770)
7 1m2v_B SEC24, protein transpor 100.0 1.1E-82 3.6E-87 709.4 29.2 409 6-469 175-603 (926)
8 2yrc_A Protein transport prote 99.6 2.8E-17 9.4E-22 121.2 1.8 52 54-105 5-58 (59)
9 3ibs_A Conserved hypothetical 98.7 4.8E-07 1.6E-11 84.1 18.4 159 128-385 10-199 (218)
10 4fx5_A VON willebrand factor t 98.7 2.8E-06 9.6E-11 88.7 24.3 199 129-435 77-281 (464)
11 2b2x_A Integrin alpha-1; compu 98.3 1.9E-05 6.4E-10 73.8 16.8 161 128-386 21-199 (223)
12 1v7p_C Integrin alpha-2; snake 98.3 2.8E-05 9.4E-10 71.3 16.9 162 128-386 5-183 (200)
13 4b4t_W RPN10, 26S proteasome r 98.3 7.7E-06 2.6E-10 78.9 13.5 147 131-376 5-163 (268)
14 1ijb_A VON willebrand factor; 98.3 3E-05 1E-09 71.3 17.2 163 128-386 12-183 (202)
15 1q0p_A Complement factor B; VO 98.3 2.6E-05 8.9E-10 72.3 16.9 173 128-386 14-207 (223)
16 1atz_A VON willebrand factor; 98.2 8.4E-05 2.9E-09 67.3 18.8 158 128-386 4-172 (189)
17 1pt6_A Integrin alpha-1; cell 98.2 2.1E-05 7.1E-10 72.9 14.7 162 128-386 6-184 (213)
18 1shu_X Anthrax toxin receptor 98.2 0.0001 3.6E-09 65.9 19.0 159 128-385 5-168 (182)
19 4hqf_A Thrombospondin-related 98.2 2.8E-05 9.6E-10 75.4 15.9 165 128-386 20-197 (281)
20 2odp_A Complement C2; C3/C5 co 98.1 3.4E-05 1.2E-09 81.1 15.7 180 128-397 8-210 (509)
21 1rrk_A Complement factor B; BB 98.1 3.8E-05 1.3E-09 80.4 15.7 177 130-397 2-202 (497)
22 1n3y_A Integrin alpha-X; alpha 98.1 5E-05 1.7E-09 69.1 14.1 162 128-386 8-181 (198)
23 2x31_A Magnesium-chelatase 60 98.1 1.2E-06 4.1E-11 79.6 2.6 167 128-384 4-174 (189)
24 3n2n_F Anthrax toxin receptor 98.0 0.00018 6.1E-09 64.6 16.5 158 129-385 7-171 (185)
25 4hqo_A Sporozoite surface prot 98.0 0.00014 4.6E-09 70.1 16.5 164 129-386 18-194 (266)
26 2x5n_A SPRPN10, 26S proteasome 98.0 0.00022 7.5E-09 65.4 16.2 91 244-374 68-159 (192)
27 1mf7_A Integrin alpha M; cell 98.0 2.6E-05 9.1E-10 71.0 10.0 162 128-386 4-177 (194)
28 1mjn_A Integrin alpha-L; rossm 97.8 0.00029 9.8E-09 63.4 13.5 153 129-386 2-167 (179)
29 3hrz_D Complement factor B; se 97.7 0.0002 6.9E-09 78.7 13.5 178 129-386 243-435 (741)
30 3zqk_A VON willebrand factor; 97.6 0.0017 6E-08 59.2 16.4 49 128-176 20-73 (199)
31 2xgg_A Microneme protein 2; A/ 97.6 0.0022 7.6E-08 57.3 16.6 143 128-367 16-168 (178)
32 3k6s_A Integrin alpha-X; cell 97.3 0.00062 2.1E-08 78.1 10.4 159 129-386 130-302 (1095)
33 1jey_B KU80; double-strand DNA 97.2 0.003 1E-07 67.3 14.0 44 130-173 8-62 (565)
34 3rag_A Uncharacterized protein 95.6 0.063 2.1E-06 50.5 10.1 46 128-173 133-182 (242)
35 2ww8_A RRGA, cell WALL surface 95.4 0.064 2.2E-06 60.0 11.0 48 128-175 223-280 (893)
36 1jey_A KU70; double-strand DNA 95.3 0.35 1.2E-05 51.8 16.3 68 268-360 140-208 (609)
37 3fcs_B Integrin beta-3; beta p 95.2 0.39 1.3E-05 52.1 16.0 213 128-383 110-335 (690)
38 3t3p_B Integrin beta-3; integr 93.9 5.3 0.00018 41.0 20.2 194 128-363 110-316 (472)
39 1yvr_A RO autoantigen, 60-kDa 93.9 0.2 7E-06 52.7 10.1 46 128-173 367-418 (538)
40 3vi3_B Integrin beta-1; beta p 93.3 6.7 0.00023 40.0 19.4 192 128-364 121-324 (454)
41 2iue_A Pactolus I-domain; memb 93.1 1.8 6.2E-05 39.7 13.8 45 129-173 3-51 (212)
42 3v4v_B Integrin beta-7; cell a 92.2 12 0.00041 38.7 21.0 210 128-382 131-353 (503)
43 3k6s_B Integrin beta-2; cell r 89.4 5.9 0.0002 42.8 15.1 210 128-383 103-325 (687)
44 2j9u_B VPS36, vacuolar protein 80.9 0.37 1.3E-05 36.4 0.4 19 79-97 16-34 (76)
45 2a20_A Regulating synaptic mem 80.3 0.39 1.3E-05 34.4 0.3 28 57-88 32-59 (62)
46 2nvo_A RO sixty-related protei 77.4 7.2 0.00025 40.8 9.1 48 128-175 361-416 (535)
47 2gmg_A Hypothetical protein PF 76.4 0.79 2.7E-05 37.1 1.0 35 57-96 66-100 (105)
48 1pft_A TFIIB, PFTFIIBN; N-term 72.0 5 0.00017 27.5 4.3 29 58-89 5-33 (50)
49 1gh9_A 8.3 kDa protein (gene M 70.4 1.4 4.9E-05 33.0 1.1 31 57-93 3-33 (71)
50 1vq8_Z 50S ribosomal protein L 66.9 3 0.0001 32.3 2.4 29 59-91 28-56 (83)
51 4gat_A Nitrogen regulatory pro 66.5 2.1 7.2E-05 31.6 1.3 31 57-88 8-38 (66)
52 3rag_A Uncharacterized protein 63.5 24 0.00081 32.9 8.2 44 340-383 29-76 (242)
53 2vut_I AREA, nitrogen regulato 62.6 1.8 6E-05 29.2 0.3 30 58-88 1-30 (43)
54 2hgo_A CASSIICOLIN; toxin, dis 59.8 5 0.00017 23.1 1.8 26 60-86 2-27 (27)
55 6rxn_A Rubredoxin; electron tr 52.6 3.1 0.00011 28.4 0.2 9 80-88 30-38 (46)
56 1gnf_A Transcription factor GA 51.3 2.7 9.3E-05 28.7 -0.3 31 58-89 4-34 (46)
57 1s24_A Rubredoxin 2; electron 51.1 3.6 0.00012 32.1 0.3 31 58-88 35-76 (87)
58 2csz_A Synaptotagmin-like prot 47.1 6.8 0.00023 29.7 1.3 31 59-89 43-73 (76)
59 1yk4_A Rubredoxin, RD; electro 46.4 4.8 0.00016 28.2 0.3 9 80-88 35-43 (52)
60 1x0t_A Ribonuclease P protein 46.2 6.3 0.00021 32.7 1.1 35 59-93 66-107 (120)
61 3j21_g 50S ribosomal protein L 43.9 7.5 0.00026 27.1 1.0 27 57-91 13-39 (51)
62 3j20_Y 30S ribosomal protein S 42.1 12 0.00042 25.8 1.9 26 58-89 19-46 (50)
63 4rxn_A Rubredoxin; electron tr 41.4 7 0.00024 27.6 0.5 9 80-88 36-44 (54)
64 2zet_C Melanophilin; complex, 39.3 6.1 0.00021 34.2 -0.1 32 60-91 87-119 (153)
65 1yuz_A Nigerythrin; rubrythrin 38.8 9.2 0.00032 34.6 1.0 25 58-89 171-195 (202)
66 2v3b_B Rubredoxin 2, rubredoxi 38.0 7.2 0.00025 27.6 0.1 8 81-88 37-44 (55)
67 1dx8_A Rubredoxin; electron tr 37.9 8.4 0.00029 28.7 0.5 9 80-88 40-48 (70)
68 2dj7_A Actin-binding LIM prote 37.9 40 0.0014 25.1 4.5 40 50-89 7-51 (80)
69 1e8j_A Rubredoxin; iron-sulfur 37.5 7.4 0.00025 27.2 0.1 9 80-88 3-11 (52)
70 4hc9_A Trans-acting T-cell-spe 36.6 7.5 0.00026 32.0 0.0 30 58-88 5-34 (115)
71 2kdx_A HYPA, hydrogenase/ureas 35.8 12 0.00042 30.6 1.3 28 58-91 73-101 (119)
72 2k3r_A Ribonuclease P protein 35.2 10 0.00035 31.5 0.7 35 59-93 61-102 (123)
73 2kn9_A Rubredoxin; metalloprot 34.9 7.8 0.00027 29.7 -0.1 8 81-88 61-68 (81)
74 3dfx_A Trans-acting T-cell-spe 34.2 4.8 0.00016 29.4 -1.3 30 58-88 7-36 (63)
75 1zbd_B Rabphilin-3A; G protein 34.1 14 0.00047 31.2 1.3 33 59-91 73-109 (134)
76 2k0a_A PRE-mRNA-splicing facto 33.0 11 0.00039 30.1 0.5 41 59-99 30-76 (109)
77 2apo_B Ribosome biogenesis pro 32.7 20 0.00069 25.8 1.8 28 56-93 4-31 (60)
78 1zso_A Hypothetical protein; s 32.7 17 0.00057 31.8 1.7 35 58-92 37-82 (164)
79 1w7p_D VPS36P, YLR417W; ESCRT- 31.9 9.7 0.00033 40.0 0.0 20 78-97 115-134 (566)
80 1wii_A Hypothetical UPF0222 pr 31.7 10 0.00036 29.3 0.1 15 79-93 22-36 (85)
81 1fp0_A KAP-1 corepressor; PHD 31.6 19 0.00064 28.1 1.6 35 57-92 36-75 (88)
82 2lk0_A RNA-binding protein 5; 30.4 14 0.00048 22.9 0.5 13 79-91 4-16 (32)
83 2l4z_A DNA endonuclease RBBP8, 29.6 52 0.0018 26.9 4.2 33 57-89 60-97 (123)
84 4ayb_P DNA-directed RNA polyme 29.5 15 0.0005 25.0 0.5 9 81-89 24-32 (48)
85 2avu_E Flagellar transcription 28.7 9.8 0.00034 34.1 -0.5 28 57-87 133-161 (192)
86 2jny_A Uncharacterized BCR; st 28.1 52 0.0018 24.1 3.4 32 57-92 9-40 (67)
87 2js4_A UPF0434 protein BB2007; 28.1 50 0.0017 24.4 3.3 32 57-92 7-38 (70)
88 2co8_A NEDD9 interacting prote 27.9 48 0.0016 24.7 3.4 33 57-89 14-51 (82)
89 1nj3_A NPL4; NZF domain, rubre 27.3 21 0.00073 21.7 1.0 15 78-92 4-18 (31)
90 3h0g_L DNA-directed RNA polyme 25.8 29 0.00098 25.2 1.6 28 59-91 22-49 (63)
91 1dl6_A Transcription factor II 25.8 36 0.0012 24.1 2.1 29 58-89 11-39 (58)
92 2jr6_A UPF0434 protein NMA0874 25.0 65 0.0022 23.6 3.5 32 57-92 7-38 (68)
93 4hc9_A Trans-acting T-cell-spe 24.4 18 0.0006 29.7 0.3 31 57-88 58-88 (115)
94 1twf_I B12.6, DNA-directed RNA 24.3 16 0.00055 30.2 0.0 36 58-93 4-39 (122)
95 3a9j_C Mitogen-activated prote 24.2 28 0.00095 21.7 1.1 15 78-92 6-20 (34)
96 2kae_A GATA-type transcription 24.0 11 0.00037 28.2 -1.0 31 58-88 8-38 (71)
97 2k1p_A Zinc finger RAN-binding 24.0 20 0.00067 22.4 0.4 12 80-91 6-17 (33)
98 1a7i_A QCRP2 (LIM1); LIM domai 23.6 64 0.0022 23.8 3.4 32 58-89 7-43 (81)
99 2k4x_A 30S ribosomal protein S 23.3 43 0.0015 23.5 2.1 28 58-89 18-45 (55)
100 3gj3_B Nuclear pore complex pr 22.2 27 0.00091 21.9 0.7 15 79-93 6-20 (33)
101 2iyb_E Testin, TESS, TES; LIM 22.1 71 0.0024 22.4 3.2 31 59-89 3-41 (65)
102 3gj5_B Nuclear pore complex pr 21.5 28 0.00096 22.0 0.7 15 79-93 6-20 (34)
103 1vd4_A Transcription initiatio 21.4 28 0.00096 24.2 0.8 35 57-91 13-50 (62)
104 1wg8_A Predicted S-adenosylmet 21.2 35 0.0012 32.5 1.7 28 144-171 208-235 (285)
105 3a43_A HYPD, hydrogenase nicke 20.9 25 0.00086 29.7 0.6 10 81-90 108-117 (139)
106 1iml_A CRIP, cysteine rich int 20.9 54 0.0019 23.8 2.4 30 59-88 1-35 (76)
107 2akl_A PHNA-like protein PA012 20.9 51 0.0017 27.5 2.4 29 57-90 26-54 (138)
108 1bbo_A Human enhancer-binding 20.3 26 0.00089 23.3 0.4 33 59-91 2-40 (57)
109 3tka_A Ribosomal RNA small sub 20.1 37 0.0013 33.3 1.6 28 144-171 249-276 (347)
No 1
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=2.2e-91 Score=772.99 Aligned_cols=437 Identities=37% Similarity=0.682 Sum_probs=391.6
Q ss_pred CCcccccCCCeeeecCCCCCCCHHHHhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCccccC--CCeeeCCCceEEcCCc
Q 012148 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIVDFAAK 79 (470)
Q Consensus 2 ~~~~~~~~~~~iR~T~~~~P~t~~~~~~~~iPlg~vv~P~~~~~~~~~~ip~v~~~~~RC~~--C~aYiNp~~~~~~~g~ 79 (470)
|||+++|+++|||+||++||.+++++++++||||++|+||++. +++|+++++|+||++ |+|||||||+|+.+|+
T Consensus 1 ~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~ 76 (768)
T 1m2o_A 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAPYNPVVCSGPHCKSILNPYCVIDPRNS 76 (768)
T ss_dssp -CHHHHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCC----TTCCEECSCCCBCCSTTTCCBCCTTSCEETTTT
T ss_pred CCcccccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCC----CCCCcCCCCCCccCCCCCCeEECCceEEeCCCC
Confidence 7899999999999999999999999999999999999999975 579999999999999 9999999999999999
Q ss_pred eEEeCCCCCCCCCCccccCCCCCCCCcccCCCcceEEEeCCCCCCCCCCCCEEEEEEEcccchhhHHHHHHHHHHHhhcC
Q 012148 80 IWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLL 159 (470)
Q Consensus 80 ~w~C~~C~~~N~vp~~y~~~~~~~~~pEL~~~~~tvey~~~~~~~~~~~~p~~vFvID~S~~~~~~~~l~~~l~~~l~~l 159 (470)
+|+||||++.|.+|++|+..+..++|||| +++||||.+++.. +.||+|+||||+|.++++++.++++|+++|+.|
T Consensus 77 ~W~C~~C~~~N~~P~~y~~~~~~~~~pEL--~~~tvEy~~p~~~---~~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~L 151 (768)
T 1m2o_A 77 SWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYITNKPV---TVPPIFFFVVDLTSETENLDSLKESIITSLSLL 151 (768)
T ss_dssp EECCTTTCCCCBCCGGGCC---CCCCGGG--TCSEEEEECSCCC---CSCCEEEEEEECCSCHHHHHHHHHHHHHHHHTS
T ss_pred EEEcccCCCCCCCChHHccCCcccCChhh--ccCCEEEECCCCC---CCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999865667889999 5999999998643 479999999999999999999999999999999
Q ss_pred CCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHHHHh-hcccCCCCCCCccccCc-----cCCCCc--c
Q 012148 160 PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL-NFFIKKPKPSTGVIAGV-----RDGLSS--D 231 (470)
Q Consensus 160 p~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~~~~-~l~~~~~~~~~~~~p~~-----~d~~~~--~ 231 (470)
|++++|||||||+.||||+++ .+. +++++||.|+++++.+++++++ ++++.. +|++ .|++.+ .
T Consensus 152 p~~~~VGlITf~~~V~~y~l~-~~~-~~~~~V~~g~k~~~~~q~~~~l~~l~~~~-------~~~~~~~~~~~~f~p~~~ 222 (768)
T 1m2o_A 152 PPNALIGLITYGNVVQLHDLS-SET-IDRCNVFRGDREYQLEALTEMLTGQKPTG-------PGGAASHLPNAMNKVTPF 222 (768)
T ss_dssp CTTCEEEEEEESSEEEECCCS-SSS-SEEEEEEETTSCCCHHHHHHHHHSCCCC----------------------CCSS
T ss_pred CCCCEEEEEEECCEEEEEECC-CCC-CcceeeecCCccccHHHHHHHHhhccccc-------cCCccccccccccccccC
Confidence 999999999999999999999 776 8999999999999999999998 765410 1111 111111 2
Q ss_pred ccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCceeecC
Q 012148 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSK 311 (470)
Q Consensus 232 ~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~GG~Ii~F~~g~pt~GpG~l~~~ 311 (470)
+.++||+|++||++.|.++|++|++++|++++++++.||+|+||++|..+|+.+..+.||||++|++|+||.|||+|+.+
T Consensus 223 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r 302 (768)
T 1m2o_A 223 SLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNS 302 (768)
T ss_dssp SGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCS
T ss_pred CccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccccc
Confidence 36899999999999999999999998888888899999999999999999997777899999999999999999999999
Q ss_pred CCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChhhchhhhcccCceEEEcCCCCchhhHH
Q 012148 312 NLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKD 391 (470)
Q Consensus 312 ~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~ 391 (470)
+.++++|+|+|++++++++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.+
T Consensus 303 ~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~ 382 (768)
T 1m2o_A 303 ELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQ 382 (768)
T ss_dssp BTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHH
T ss_pred ccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHH
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-cccccceeeEEEEEecccccceeeeecCCeeeeEEEeCceec----------------chhhhHhhhhhhc
Q 012148 392 SVRRVFHS-GDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKK----------------YLLLAKLIYAYMH 454 (470)
Q Consensus 392 ~l~~~l~~-~~~~~~~~~~~~lr~~~~~~~v~~r~S~gl~i~~~~G~~~~~----------------~~~~~~~~~~~~~ 454 (470)
++++++++ ...++++||+|+|| | |||+||+|++++||++.. +.++.++ +..
T Consensus 383 ~l~r~l~~~~~~~~~~gf~a~mr-------V--r~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l---~~~ 450 (768)
T 1m2o_A 383 SYLRLFAKDEEGYLKMAFNGNMA-------V--KTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKM---ASL 450 (768)
T ss_dssp HHHHTTCBCTTSSBSCEEEEEEE-------E--EECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEE---EEE
T ss_pred HHHHHHhhccccccceEEEEEEE-------E--EecCCceEEEeecCccccccccccccCcceeccCCCceEEe---ecC
Confidence 99999954 33456899999999 9 999999999999999953 3344444 568
Q ss_pred CCCccchhhccccc
Q 012148 455 GADSLFQQDLSLSE 468 (470)
Q Consensus 455 ~~~~~~~~~~~~~~ 468 (470)
++|++|+.++++++
T Consensus 451 ~~d~t~~v~f~~~~ 464 (768)
T 1m2o_A 451 SPYHSYAIFFEIAN 464 (768)
T ss_dssp CTTCCEEEEEEECC
T ss_pred CCCCEEEEEEEecc
Confidence 99999999998776
No 2
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=2.2e-90 Score=764.25 Aligned_cols=438 Identities=41% Similarity=0.743 Sum_probs=391.9
Q ss_pred CCCcc----cccCCCeeeecCCCCCCCHHHHhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCccccC--CCeeeCCCceE
Q 012148 1 MTEFM----DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIV 74 (470)
Q Consensus 1 ~~~~~----~~~~~~~iR~T~~~~P~t~~~~~~~~iPlg~vv~P~~~~~~~~~~ip~v~~~~~RC~~--C~aYiNp~~~~ 74 (470)
||||. +||+|+|||+||++||.+++++++++||||++|+||++. +++|+++++|+||++ |+|||||||+|
T Consensus 5 ~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~~pvRC~~~~CrayiNPf~~~ 80 (769)
T 2nut_A 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKER----PDLPPIQYEPVLCSRTTCRAVLNPLCQV 80 (769)
T ss_dssp --CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCC----SCCCCBCSCCCBCSSTTCCCBCCTTSEE
T ss_pred ccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCC----CCCCcCCCCCCcCCCCCCCeEECCceEE
Confidence 78865 579999999999999999999999999999999999975 579999999999999 99999999999
Q ss_pred EcCCceEEeCCCCCCCCCCccccCCCCCCCCcccCCCcceEEEeCCCCCCCCCCCCEEEEEEEcccchhhHHHHHHHHHH
Q 012148 75 DFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQ 154 (470)
Q Consensus 75 ~~~g~~w~C~~C~~~N~vp~~y~~~~~~~~~pEL~~~~~tvey~~~~~~~~~~~~p~~vFvID~S~~~~~~~~l~~~l~~ 154 (470)
+.+|++|+||||++.|.+|++|+..+..++||||.++++||||.++++++ .+|+|+||||+|.++++++.++++|++
T Consensus 81 ~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~p---~pp~~vFvIDvS~~a~~l~~l~~si~~ 157 (769)
T 2nut_A 81 DYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQ---MPLIFLYVVDTCMEDEDLQALKESMQM 157 (769)
T ss_dssp ETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSCC---CCCEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred eCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCCC---CCCEEEEEEECCccHHHHHHHHHHHHH
Confidence 99999999999999999999998666678899998889999999988764 799999999999999999999999999
Q ss_pred HhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHHHHhhcccCCCCCCCccccCc-----cCCCC
Q 012148 155 AIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGV-----RDGLS 229 (470)
Q Consensus 155 ~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~~~~~l~~~~~~~~~~~~p~~-----~d~~~ 229 (470)
+|+.||++++|||||||+.||||+++ .+. +++.+||.|+++++.++++++++++++ .+++ .|++
T Consensus 158 ~L~~Lp~~~~VGlITf~~~v~~y~l~-~~~-~~~~~vf~G~k~~~~~q~~~ml~v~d~--------~~~~~~~~~~~~f- 226 (769)
T 2nut_A 158 SLSLLPPTALVGLITFGRMVQVHELG-CEG-ISKSYVFRGTKDLSAKQLQEMLGLSKV--------PVTQATRGPQVQQ- 226 (769)
T ss_dssp HHTTSCTTCEEEEEEESSEEEEEESS-CCS-SCEEEEEETTSCCCSHHHHHHHC--------------------------
T ss_pred HHHhCCCCceEEEEEeCCEEEEEeCC-CCC-CccceeecCCccccHHHHHHHhCCCCc--------ccccccccccccC-
Confidence 99999999999999999999999999 776 899999999999999999988866431 0011 2222
Q ss_pred ccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCceee
Q 012148 230 SDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIV 309 (470)
Q Consensus 230 ~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~GG~Ii~F~~g~pt~GpG~l~ 309 (470)
+.+.++||+|++++++.|.++|++|+++.|++.+++++.||+|+||++|..+|+.+..+.||||++|++|+||.|||+|+
T Consensus 227 ~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~ 306 (769)
T 2nut_A 227 PPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVV 306 (769)
T ss_dssp --CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSSCCS
T ss_pred CCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCCCCc
Confidence 12348999999999999999999999977878888899999999999999999987778999999999999999999999
Q ss_pred cCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChhhchhhhcccCceEEEcCCCCchhh
Q 012148 310 SKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVF 389 (470)
Q Consensus 310 ~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~ 389 (470)
.++.++++|+|+|+++|++++++++.+||+++|++|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+.++|
T Consensus 307 ~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~ 386 (769)
T 2nut_A 307 GDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLF 386 (769)
T ss_dssp CSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHH
T ss_pred CcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhH
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-cccccceeeEEEEEecccccceeeeecCCeeeeEEEeCcee---------------cchhhhHhhhhhh
Q 012148 390 KDSVRRVFHS-GDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYK---------------KYLLLAKLIYAYM 453 (470)
Q Consensus 390 ~~~l~~~l~~-~~~~~~~~~~~~lr~~~~~~~v~~r~S~gl~i~~~~G~~~~---------------~~~~~~~~~~~~~ 453 (470)
.+++++.+++ ...++++||+|+|| | |||+||+|++++||++. ++.++.++ +.
T Consensus 387 ~~~l~~~~~~~~~~~l~~gf~a~mr-------V--r~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l---~~ 454 (769)
T 2nut_A 387 KQTFQRVFTKDMHGQFKMGFGGTLE-------I--KTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKI---CG 454 (769)
T ss_dssp HHHHHHTTCBCTTSCBSCEEEEEEE-------E--EECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEE---EE
T ss_pred HHHHHHHHhhhcccccceEEEEEEE-------E--EecCCeEEEeeeccccccccccCccccceeccCCCceEEe---ec
Confidence 9999999954 23345799999999 9 99999999999999983 44455555 46
Q ss_pred cCCCccchhhccccc
Q 012148 454 HGADSLFQQDLSLSE 468 (470)
Q Consensus 454 ~~~~~~~~~~~~~~~ 468 (470)
.++|++|+.++++++
T Consensus 455 ~~~d~s~~v~f~~~~ 469 (769)
T 2nut_A 455 LSPTTTLAIYFEVVN 469 (769)
T ss_dssp ECTTCCEEEEEEEC-
T ss_pred CCCCCEEEEEEEecC
Confidence 899999999998776
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=5e-84 Score=709.89 Aligned_cols=398 Identities=21% Similarity=0.345 Sum_probs=349.3
Q ss_pred ccccCCCeeeecCCCCCCCHHHHhhCCCCeEEEEccCCCCCCCCCCCCCCCC-CCccccCCCeeeCCCceEEcCCceEEe
Q 012148 5 MDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY-APLRCRTCRSILNPFSIVDFAAKIWIC 83 (470)
Q Consensus 5 ~~~~~~~~iR~T~~~~P~t~~~~~~~~iPlg~vv~P~~~~~~~~~~ip~v~~-~~~RC~~C~aYiNp~~~~~~~g~~w~C 83 (470)
..||+|+|||+|||+||.+++++++++||||++|+||++. +++|++++ +|+||++|||||||||+|.+ +++|+|
T Consensus 35 ~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~----~~~P~v~~~~p~RC~rCrayiNPf~~f~~-~~~w~C 109 (751)
T 3eh1_A 35 KLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDL----TQLPVITSNTIVRCRSCRTYINPFVSFID-QRRWKC 109 (751)
T ss_dssp HHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCC----SCCCEECCSCCCBCTTTCCBCCTTCEESS-SSEEEC
T ss_pred ccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcC----CCCCccCCCCCCcccCccCEeCCceEEec-CCEEEc
Confidence 3799999999999999999999999999999999999986 57898876 58999999999999999954 689999
Q ss_pred CCCCCCCCCCccccCC------CCCCCCcccCCCcceEEEeCCCCCC-CCCCCCEEEEEEEcccchhhHH---HHHHHHH
Q 012148 84 PFCFQRNHFPPHYASI------TDDNLPAELFPQYTTIEYEPPGPGE-KSSVPPVFMFVVDTCIIEEEMS---FLKSALS 153 (470)
Q Consensus 84 ~~C~~~N~vp~~y~~~------~~~~~~pEL~~~~~tvey~~~~~~~-~~~~~p~~vFvID~S~~~~~~~---~l~~~l~ 153 (470)
|||+..|++|++|... .+.++|||| +++||||.+++++. +++.||+|+||||+|..+++.| .++++|+
T Consensus 110 n~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL--~~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~ 187 (751)
T 3eh1_A 110 NLCYRVNDVPEEFMYNPLTRSYGEPHKRPEV--QNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLL 187 (751)
T ss_dssp TTTCCEEECCGGGC---------CGGGSHHH--HCSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHHHH
T ss_pred ccccCCCCCCHHHhcccccccccCcccCchh--ccceEEEEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHHHH
Confidence 9999999999999531 234679999 49999999987764 4668999999999999999855 5689999
Q ss_pred HHhhcCCCCc--eEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHHHHhhcccCCCCCCCccccCccCCCCcc
Q 012148 154 QAIDLLPDNS--LVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSD 231 (470)
Q Consensus 154 ~~l~~lp~~~--~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~ 231 (470)
++|+.||+++ +|||||||+.||||+++ .+...++|+|+++- ++ |++|
T Consensus 188 ~~L~~lp~~~~~~VG~ITfd~~vh~y~l~-~~~~~~qmlvv~dl--------~d----------------~f~P------ 236 (751)
T 3eh1_A 188 ENLDKLPGDSRTRIGFMTFDSTIHFYNLQ-EGLSQPQMLIVSDI--------DD----------------VFLP------ 236 (751)
T ss_dssp HHTTTSSCCTTCEEEEEEESSSEEEEECC-TTCSSCEEEEESCT--------TC----------------TTSC------
T ss_pred HHHHhcCCCcCcEEEEEEeCCEEEEEECC-CCcccceeeccccc--------cc----------------cCCC------
Confidence 9999999865 99999999999999999 66657888887621 11 2222
Q ss_pred ccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCceeecC
Q 012148 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSK 311 (470)
Q Consensus 232 ~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~GG~Ii~F~~g~pt~GpG~l~~~ 311 (470)
..++||+|++|+++.|.++|++|+.+ +.+++++.+|+|+||++|..+|+ ..||||++|++|+||.|||+|+.|
T Consensus 237 ~~~~~lv~l~e~~~~i~~lL~~Lp~~---~~~~~~~~~~~G~AL~aA~~ll~----~~GGrI~~F~sg~pt~GpG~l~~r 309 (751)
T 3eh1_A 237 TPDSLLVNLYESKELIKDLLNALPNM---FTNTRETHSALGPALQAAFKLMS----PTGGRVSVFQTQLPSLGAGLLQSR 309 (751)
T ss_dssp CGGGTSEETTTTHHHHHHHHHHGGGT---STTCSCCCCCHHHHHHHHHHHHT----TTCEEEEEEECSCCCSSTTCCCCC
T ss_pred ChhhhcccHHHHHHHHHHHHHhhhHh---hcCCCCCccchHHHHHHHHHHhh----cCCCEEEEEecCCCCCCCCccccc
Confidence 24789999999999999999999875 67788999999999999999998 799999999999999999999998
Q ss_pred CCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChhhchhhhcccCceEEEcCCCCch----
Q 012148 312 NLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHA---- 387 (470)
Q Consensus 312 ~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~---- 387 (470)
+..+ .|+| ++| +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.+++.|||.+++|++|+.+
T Consensus 310 ~~~~-~~~~---~ke-~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~ 384 (751)
T 3eh1_A 310 EDPN-QRSS---TKV-VQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPS 384 (751)
T ss_dssp CCSC-GGGG---SSS-CTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHH
T ss_pred cccc-cCCC---chh-hhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchh
Confidence 7544 3554 244 478999999999999999999999999999999999999999999999999999999964
Q ss_pred ---hhHHHHHHHHhccccccceeeEEEEEecccccceeeeecCCeeeeEEEeCceecchhhhHhhhhhhcCCCccchhhc
Q 012148 388 ---VFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQQDL 464 (470)
Q Consensus 388 ---~~~~~l~~~l~~~~~~~~~~~~~~lr~~~~~~~v~~r~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
+|.+++++.++ +++||+|+|| | |||+||+|++++||++.++.++.++ +.+++|++|+.++
T Consensus 385 ~~~~f~~dl~r~l~-----~~~gf~a~mr-------V--R~S~glkv~~~~G~~~~~~t~~~~l---~~i~~d~s~~v~~ 447 (751)
T 3eh1_A 385 QAEKLQKDLKRYLT-----RKIGFEAVMR-------I--RCTKGLSMHTFHGNFFVRSTDLLSL---ANINPDAGFAVQL 447 (751)
T ss_dssp HHHHHHHHHHHHHH-----SCCEEEEEEE-------E--EECTTEEEEEEESSSEECSSSEEEE---EEECTTCCEEEEE
T ss_pred HHHHHHHHHHHHHh-----hhhccceEEE-------E--EecCCeEEEEeeCCeEeCCCCceEe---ccCCCCCEEEEEE
Confidence 67888888884 3689999999 9 9999999999999999999877766 5699999999999
Q ss_pred ccccC
Q 012148 465 SLSEH 469 (470)
Q Consensus 465 ~~~~~ 469 (470)
+++|.
T Consensus 448 ~~~~~ 452 (751)
T 3eh1_A 448 SIEES 452 (751)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 98763
No 4
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=9.9e-83 Score=706.06 Aligned_cols=409 Identities=18% Similarity=0.290 Sum_probs=332.7
Q ss_pred cccCCCeeeecCCCCCCCHHHHhhCCCCeEEEEccCCCCCCCCCCCCCCCCC-CccccCCCeeeCCCceEEcCCceEEeC
Q 012148 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA-PLRCRTCRSILNPFSIVDFAAKIWICP 84 (470)
Q Consensus 6 ~~~~~~~iR~T~~~~P~t~~~~~~~~iPlg~vv~P~~~~~~~~~~ip~v~~~-~~RC~~C~aYiNp~~~~~~~g~~w~C~ 84 (470)
.||+|+|||+||++||.+++++++++||||++|+||++..++++++|+++.+ |+||++|+|||||||+|+++|++|+||
T Consensus 59 ~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~~~g~~W~C~ 138 (810)
T 1pcx_A 59 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 138 (810)
T ss_dssp GSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 6899999999999999999999999999999999999877666789988875 999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCCC------CCcccCCCcceEEEeCCCCCC-CCCCCCEEEEEEEcccchhhHH---HHHHHHHH
Q 012148 85 FCFQRNHFPPHYASITDDN------LPAELFPQYTTIEYEPPGPGE-KSSVPPVFMFVVDTCIIEEEMS---FLKSALSQ 154 (470)
Q Consensus 85 ~C~~~N~vp~~y~~~~~~~------~~pEL~~~~~tvey~~~~~~~-~~~~~p~~vFvID~S~~~~~~~---~l~~~l~~ 154 (470)
||++.|.+|++|+ .+..+ +||||. ++||||.+++++. +++.||+|+||||+|.++++.| .++++|++
T Consensus 139 ~C~~~N~~P~~y~-~~~~~~~~d~~~RpEL~--~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~ 215 (810)
T 1pcx_A 139 FCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQ 215 (810)
T ss_dssp TTCCEEECCGGGG-C-----CCCGGGSHHHH--CSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHH
T ss_pred CCCCcCCCchhhc-cccccCccccccCcccc--CceEEEEcCchhccCCCCCcEEEEEEECChHHHhhhHHHHHHHHHHH
Confidence 9999999999998 43333 359995 9999999998774 4568999999999999998866 67999999
Q ss_pred HhhcCCC---CceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHHHHhhcccCCCCCCCccccCccCCCCcc
Q 012148 155 AIDLLPD---NSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSD 231 (470)
Q Consensus 155 ~l~~lp~---~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~ 231 (470)
+|+.||+ +++|||||||+.||||+++ .+. .|++++ .++ .++ .++++++|++.|
T Consensus 216 ~L~~Lp~~~~~~~VGlITfd~~V~~~~l~-~~~--------~g~k~~-~~q-~~m------------lvv~dl~d~f~P- 271 (810)
T 1pcx_A 216 NLDSIPNHDERTRISILCVDNAIHYFKIP-LDS--------ENNEES-ADQ-INM------------MDIADLEEPFLP- 271 (810)
T ss_dssp HTTTSCCTTSCCEEEEEEESSSEEEEECC-CGG--------GC---------CEE------------ECCCCTTCC----
T ss_pred HHHhCCCCCCCcEEEEEEECCEEEEEecC-ccc--------cCcccc-ccc-hhh------------ccccccccccCC-
Confidence 9999996 6999999999999999999 543 144432 111 122 223334443332
Q ss_pred ccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCceeecC
Q 012148 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSK 311 (470)
Q Consensus 232 ~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~GG~Ii~F~~g~pt~GpG~l~~~ 311 (470)
..++||+|++|+++.|.++|++|+++ +.+++++.||+|+||++|..+|+ ..||||++|++|+||.|||+|+.+
T Consensus 272 ~~~~~Lv~l~e~~~~i~~lL~~L~~~---~~~~~~~~~a~G~AL~~A~~lL~----~~GGrI~~F~sg~pt~GpG~l~~r 344 (810)
T 1pcx_A 272 RPNSMVVSLKACRQNIETLLTKIPQI---FQSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLPNLGIGKLQRR 344 (810)
T ss_dssp --TTTSEETTTTHHHHHHHHHHHHHH---TTTCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCCCSSTTCCCC-
T ss_pred CcccccccHHHHHHHHHHHHHhhhhh---ccCCCCCCccHHHHHHHHHHHHH----hcCCEEEEEecCCCCCCCCccccc
Confidence 34899999999999999999999985 67788999999999999999998 789999999999999999999998
Q ss_pred CCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChhhchhhhcccCceEEEcCCCCchhh--
Q 012148 312 NLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVF-- 389 (470)
Q Consensus 312 ~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~-- 389 (470)
+.+ .|+++++|++++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+++
T Consensus 345 ~~~----~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d 420 (810)
T 1pcx_A 345 NES----GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPND 420 (810)
T ss_dssp -----------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHH
T ss_pred ccc----cccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHH
Confidence 765 36788999877999999999999999999999999999999999999999999999999999999998744
Q ss_pred ----HHHHHHHHhccccccceeeEEEEEecccccceeeeecCCeeeeEEEeCceecchhhhHhhhhhhcCCCccchhhcc
Q 012148 390 ----KDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQQDLS 465 (470)
Q Consensus 390 ----~~~l~~~l~~~~~~~~~~~~~~lr~~~~~~~v~~r~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
..++.+.+ .+++||+|+|| | |||+||+|++++||++.++.++.++ +.+++|++|+.+++
T Consensus 421 ~~~f~~dl~~~l-----~~~~gf~a~mr-------V--R~S~gl~v~~~~G~~~~~~~~~~~l---~~~~~d~s~~v~f~ 483 (810)
T 1pcx_A 421 IVKFSTEFAKHI-----SMDFCMETVMR-------A--RGSTGLRMSRFYGHFFNRSSDLCAF---STMPRDQSYLFEVN 483 (810)
T ss_dssp HHHHHHHHHHHH-----HCCCCEEEEEE-------E--EECTTEEEEEEESSSBCSSSSEEEE---SSCCSSCCEEEEEE
T ss_pred HHHHHHHHHHHh-----hhhcceeEEEE-------E--EcCCCeEEEEeecCccccCcCceEe---ecCCCCCEEEEEEE
Confidence 34444444 34589999999 9 9999999999999999999887666 46899999999999
Q ss_pred cccC
Q 012148 466 LSEH 469 (470)
Q Consensus 466 ~~~~ 469 (470)
++|.
T Consensus 484 ~~~~ 487 (810)
T 1pcx_A 484 VDES 487 (810)
T ss_dssp ECSC
T ss_pred eccC
Confidence 8764
No 5
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=7e-83 Score=702.87 Aligned_cols=408 Identities=20% Similarity=0.300 Sum_probs=353.9
Q ss_pred cccCCCeeeecCCCCCCCHHHHhhCCCCeEEEEccCCCCCCCCCCCCCCCC---CCccccCCCeeeCCCceEEcCCceEE
Q 012148 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY---APLRCRTCRSILNPFSIVDFAAKIWI 82 (470)
Q Consensus 6 ~~~~~~~iR~T~~~~P~t~~~~~~~~iPlg~vv~P~~~~~~~~~~ip~v~~---~~~RC~~C~aYiNp~~~~~~~g~~w~ 82 (470)
.||+|+|||+||++||.+++++++++||||++|+||++..+.|.++|+++. +|+||++|||||||||+|+++|++|+
T Consensus 39 gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~ 118 (766)
T 3eh2_A 39 GNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQ 118 (766)
T ss_dssp SSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEE
T ss_pred CCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEE
Confidence 599999999999999999999999999999999999998777777888864 79999999999999999999999999
Q ss_pred eCCCCCCCCCCccccCC-------CCCCCCcccCCCcceEEEeCCCCCC---CCCCCCEEEEEEEcccchhh---HHHHH
Q 012148 83 CPFCFQRNHFPPHYASI-------TDDNLPAELFPQYTTIEYEPPGPGE---KSSVPPVFMFVVDTCIIEEE---MSFLK 149 (470)
Q Consensus 83 C~~C~~~N~vp~~y~~~-------~~~~~~pEL~~~~~tvey~~~~~~~---~~~~~p~~vFvID~S~~~~~---~~~l~ 149 (470)
||||++.|++|++|++. .+.++||||. .++|||.++.+|. +++.||+|+||||+|..+++ ++.++
T Consensus 119 Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~~~vef~a~~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~ 196 (766)
T 3eh2_A 119 CCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELS--LGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLC 196 (766)
T ss_dssp CTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHH--CSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHH
T ss_pred eccccccCCCCHHHhccccccccccccccCcccc--cCceeeecCHhhccCCCCCCCCEEEEEEECchhhccchHHHHHH
Confidence 99999999999999764 2346799996 7899999988875 56789999999999999875 55679
Q ss_pred HHHHHHhhcCCCC-------ceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHHHHhhcccCCCCCCCcccc
Q 012148 150 SALSQAIDLLPDN-------SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIA 222 (470)
Q Consensus 150 ~~l~~~l~~lp~~-------~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~~~~~l~~~~~~~~~~~~p 222 (470)
++|+++|+.||++ ++|||||||+.||||+++ .+..+++|+|++. ++| +
T Consensus 197 ~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~-~~~~~~q~~vv~d--------l~d----------------~ 251 (766)
T 3eh2_A 197 EELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVK-SSLAQPQMMVVSD--------VAD----------------M 251 (766)
T ss_dssp HHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECC-TTCSSCEEEEECC--------TTT----------------C
T ss_pred HHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECC-CCCCCceEEEecC--------hhh----------------h
Confidence 9999999999965 899999999999999999 6655899998852 222 1
Q ss_pred CccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhccCCCCCcEEEEEecCCCC
Q 012148 223 GVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPST 302 (470)
Q Consensus 223 ~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~GG~Ii~F~~g~pt 302 (470)
++| ..++||+|++||++.|.++|++|+++ +.+.....+|+|+|+++|..+++. .+.||||++|++|+|+
T Consensus 252 f~P------~~~~~lv~l~e~~~~i~~lL~~L~~~---~~~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~~F~s~lP~ 320 (766)
T 3eh2_A 252 FVP------LLDGFLVNVNESRAVITSLLDQIPEM---FADTRETETVFVPVIQAGMEALKA--AECAGKLFLFHTSLPI 320 (766)
T ss_dssp CCC------CCTTSSBCTTTTHHHHHHHHHHHHHH---HTTCCCCCCCSHHHHHHHHHHHHH--TTCCEEEEEEECSCCC
T ss_pred ccc------cccceeEeHHHHHHHHHHHHHhhhhh---ccCCCCCcchHHHHHHHHHHHhcc--CCCCcEEEEEecCCCC
Confidence 222 34789999999999999999999986 344445678899999999999873 2579999999999776
Q ss_pred -CCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChhhchhhhcccCceEEEc
Q 012148 303 -EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLS 381 (470)
Q Consensus 303 -~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~~l~~l~~~TGG~v~~y 381 (470)
.|||+|+.+++++.+|+ ++|+ ++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|
T Consensus 321 t~GpG~l~~r~~~~~~~s----dke~-~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y 395 (766)
T 3eh2_A 321 AEAPGKLKNRDDRKLINT----DKEK-TLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKY 395 (766)
T ss_dssp SSSTTCCCCCCCGGGTTS----TTGG-GGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEEC
T ss_pred cCCCcccccccccccCCC----cchh-hhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEe
Confidence 89999999998877765 4555 78999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHhccccccceeeEEEEEecccccceeeeecCCeeeeEEEeCceecchhhhHhhhhhhcCCCccch
Q 012148 382 DSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQ 461 (470)
Q Consensus 382 ~~f~~~~~~~~l~~~l~~~~~~~~~~~~~~lr~~~~~~~v~~r~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (470)
++|+.+++.+.|.+.+++. ..+++||+|+|| | |||+||+|+++|||+..++.++.++ +.+++|++|+
T Consensus 396 ~~F~~~~d~~~f~~dl~~~-l~~~~gf~a~mr-------V--R~S~glkv~~~~G~~~~~~t~~~~l---~~i~~d~s~~ 462 (766)
T 3eh2_A 396 ASFQVENDQERFLSDLRRD-VQKVVGFDAVMR-------V--RTSTGIRAVDFFGAFYMSNTTDVEL---AGLDGDKTVT 462 (766)
T ss_dssp TTCCHHHHHHHHHHHHHHH-HHSCEEEEEEEE-------E--EECTTEEEEEEEESCBCSSSSCEEE---EEEETTCCEE
T ss_pred CCCcchhHHHHHHHHHHHH-hhhcceeeEEEE-------E--EecCCeEEEEeECCeecCCCCceee---ccCCCCceEE
Confidence 9999887555555544322 145799999999 9 9999999999999999988776655 5699999999
Q ss_pred hhcccccC
Q 012148 462 QDLSLSEH 469 (470)
Q Consensus 462 ~~~~~~~~ 469 (470)
.+++++|.
T Consensus 463 v~f~~~~~ 470 (766)
T 3eh2_A 463 VEFKHDDR 470 (766)
T ss_dssp EEEEESSC
T ss_pred EEEEecCC
Confidence 99998764
No 6
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=2e-82 Score=699.62 Aligned_cols=408 Identities=18% Similarity=0.302 Sum_probs=353.7
Q ss_pred cccCCCeeeecCCCCCCCHHHHhhCCCCeEEEEccCCCCCCCCCCCCCCC---CCCccccCCCeeeCCCceEEcCCceEE
Q 012148 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILP---YAPLRCRTCRSILNPFSIVDFAAKIWI 82 (470)
Q Consensus 6 ~~~~~~~iR~T~~~~P~t~~~~~~~~iPlg~vv~P~~~~~~~~~~ip~v~---~~~~RC~~C~aYiNp~~~~~~~g~~w~ 82 (470)
.||+|+|||+||++||.+++++++++||||++|+||++..++|.++|+++ ++|+||++|||||||||+|+++|++|+
T Consensus 43 gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~ 122 (770)
T 3efo_B 43 GNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQ 122 (770)
T ss_dssp SSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEE
T ss_pred CCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEE
Confidence 59999999999999999999999999999999999999877667788875 479999999999999999999999999
Q ss_pred eCCCCCCCCCCccccCCC-------CCCCCcccCCCcceEEEeCCCCCC---CCCCCCEEEEEEEcccchhh---HHHHH
Q 012148 83 CPFCFQRNHFPPHYASIT-------DDNLPAELFPQYTTIEYEPPGPGE---KSSVPPVFMFVVDTCIIEEE---MSFLK 149 (470)
Q Consensus 83 C~~C~~~N~vp~~y~~~~-------~~~~~pEL~~~~~tvey~~~~~~~---~~~~~p~~vFvID~S~~~~~---~~~l~ 149 (470)
||||+..|++|++|++.. +.++||||. +++|||.++.+|. +++.||+|+||||+|..+++ ++.++
T Consensus 123 Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~ 200 (770)
T 3efo_B 123 CGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELS--LGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLIC 200 (770)
T ss_dssp CTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHH--CSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHH
T ss_pred eccccccCCCchHhhccccccccccccccCcccc--cCceeeecCHHHhccCCCCCCcEEEEEEEcchhhccchHHHHHH
Confidence 999999999999998643 234689996 8999999988775 56789999999999999875 55679
Q ss_pred HHHHHHhhcCCCC-------ceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHHHHhhcccCCCCCCCcccc
Q 012148 150 SALSQAIDLLPDN-------SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIA 222 (470)
Q Consensus 150 ~~l~~~l~~lp~~-------~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~~~~~l~~~~~~~~~~~~p 222 (470)
++|+++|+.||++ ++|||||||+.||||+++ .+...++|+|+++- ++ |
T Consensus 201 ~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~-~~~~q~q~~vv~d~--------~d----------------~ 255 (770)
T 3efo_B 201 EELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVK-SNLAQPQMMVVTDV--------GE----------------V 255 (770)
T ss_dssp HHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECC-TTCSSCEEEEECCT--------TS----------------C
T ss_pred HHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCC-CcccCceEEEeccc--------cc----------------c
Confidence 9999999999964 899999999999999999 66668888887621 11 1
Q ss_pred CccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhccCCCCCcEEEEEecCCCC
Q 012148 223 GVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPST 302 (470)
Q Consensus 223 ~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~GG~Ii~F~~g~pt 302 (470)
++| ..++||+|++||++.|.++|++|+++ +...+...+|+|+||++|..+++. .+.||||++|++|+|+
T Consensus 256 f~P------~~~~~Lv~l~e~~~~i~~lL~~L~~~---~~~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~~F~s~lP~ 324 (770)
T 3efo_B 256 FVP------LLDGFLVNYQESQSVIHNLLDQIPDM---FADSNENETVFAPVIQAGMEALKA--ADCPGKLFIFHSSLPT 324 (770)
T ss_dssp CCC------CSSSSSBCTTTTHHHHHHHHHHHHHH---HHTCCCCCCCCHHHHHHHHHHHHH--HTCCEEEEEEECSCCC
T ss_pred cCC------CccceeeeHHHHHHHHHHHHHhhHhh---ccCCCCCcchHHHHHHHHHHHhcc--CCCCcEEEEEecCCCC
Confidence 222 24789999999999999999999876 334444578899999999999862 2589999999999666
Q ss_pred -CCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChhhchhhhcccCceEEEc
Q 012148 303 -EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLS 381 (470)
Q Consensus 303 -~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~~l~~l~~~TGG~v~~y 381 (470)
.|||+|+.+++++.+|+ ++|+ ++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|
T Consensus 325 t~GpG~l~~r~~~~~~~t----~ke~-~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y 399 (770)
T 3efo_B 325 AEAPGKLKNRDDKKLVNT----DKEK-ILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKY 399 (770)
T ss_dssp SSSTTCCCCCCCCCCSSC----SCGG-GGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEEC
T ss_pred cCCCccccccccccccCC----cchh-hhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEe
Confidence 89999999998887765 4554 68999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHhccccccceeeEEEEEecccccceeeeecCCeeeeEEEeCceecchhhhHhhhhhhcCCCccch
Q 012148 382 DSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQ 461 (470)
Q Consensus 382 ~~f~~~~~~~~l~~~l~~~~~~~~~~~~~~lr~~~~~~~v~~r~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (470)
++|+.+.+.+.|.+.+.+. ..+++||+|+|| | |||+||+|+++|||+..++.+..++ +.+++|++|+
T Consensus 400 ~~F~~~~~~~~f~~dl~~~-l~~~~gf~a~mr-------V--R~S~gl~v~~~~G~~~~~~t~~~~l---~~~~~d~s~~ 466 (770)
T 3efo_B 400 NNFQMHLDRQQFLNDLRND-IEKKIGFDAIMR-------V--RTSTGFRATDFFGGILMNNTTDVEM---AAIDCDKAVT 466 (770)
T ss_dssp TTCCHHHHHHHHHHHHHHH-HHSCEEEEEEEE-------E--EECTTEEEEEEESSCBCSSSSCEEE---EEEESSCCEE
T ss_pred cCCcchhHHHHHHHHHHHh-hhhceeeeEEEE-------E--EecCCeEEEEeECCeeCCCCCceEe---cccCcCceEE
Confidence 9999877666666655332 246799999999 9 9999999999999999988765555 5799999999
Q ss_pred hhcccccC
Q 012148 462 QDLSLSEH 469 (470)
Q Consensus 462 ~~~~~~~~ 469 (470)
.+++++|.
T Consensus 467 v~f~~~~~ 474 (770)
T 3efo_B 467 VEFKHDDK 474 (770)
T ss_dssp EEEEESSC
T ss_pred EEEEecCC
Confidence 99998774
No 7
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=1.1e-82 Score=709.38 Aligned_cols=409 Identities=18% Similarity=0.295 Sum_probs=348.3
Q ss_pred cccCCCeeeecCCCCCCCHHHHhhCCCCeEEEEccCCCCCCCCCCCCCCCCC-CccccCCCeeeCCCceEEcCCceEEeC
Q 012148 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA-PLRCRTCRSILNPFSIVDFAAKIWICP 84 (470)
Q Consensus 6 ~~~~~~~iR~T~~~~P~t~~~~~~~~iPlg~vv~P~~~~~~~~~~ip~v~~~-~~RC~~C~aYiNp~~~~~~~g~~w~C~ 84 (470)
.||+|+|||+||++||.+++++++++||||++|+||++..++++++|+++.+ |+||++|+|||||||+|+++|++|+||
T Consensus 175 gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~g~~W~Cn 254 (926)
T 1m2v_B 175 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 254 (926)
T ss_dssp SSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 6899999999999999999999999999999999999877666789988875 999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCCCC------CcccCCCcceEEEeCCCCCC-CCCCCCEEEEEEEcccchhhHH---HHHHHHHH
Q 012148 85 FCFQRNHFPPHYASITDDNL------PAELFPQYTTIEYEPPGPGE-KSSVPPVFMFVVDTCIIEEEMS---FLKSALSQ 154 (470)
Q Consensus 85 ~C~~~N~vp~~y~~~~~~~~------~pEL~~~~~tvey~~~~~~~-~~~~~p~~vFvID~S~~~~~~~---~l~~~l~~ 154 (470)
||++.|.+|++|+ .+..++ ||||. ++||||.+++++. +++.+|+||||||+|..+++.| .++++|++
T Consensus 255 fC~~~N~~P~~Y~-~~~~~~~~d~~~RpEL~--~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~ 331 (926)
T 1m2v_B 255 FCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQ 331 (926)
T ss_dssp TTCCEEECCGGGT-TTSTTCGGGGGGSHHHH--CSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHH
T ss_pred CCCCCCCCchhhc-cccccCccccccCcccc--CceEEEEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHH
Confidence 9999999999998 433333 59995 9999999998774 4568999999999999998855 68999999
Q ss_pred HhhcCCC---CceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHHHHhhcccCCCCCCCccccCccCCCCcc
Q 012148 155 AIDLLPD---NSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSD 231 (470)
Q Consensus 155 ~l~~lp~---~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~ 231 (470)
+|+.||+ +++|||||||+.||||+++ .+.. |+++ +.++ .+++ ++++++|++.|
T Consensus 332 ~L~~LP~~~~~~~VGlITFds~Vh~y~l~-~~~~--------g~k~-~~~q-~qml------------vvsdl~d~f~P- 387 (926)
T 1m2v_B 332 NLDSIPNHDERTRISILCVDNAIHYFKIP-LDSE--------NNEE-SADQ-INMM------------DIADLEEPFLP- 387 (926)
T ss_dssp TTTTSCCTTSCCEECEEEESSSEEEEECC-CC------------------C-CEEE------------EECCCSSCCCS-
T ss_pred HHHhCCCCCCCcEEEEEEECCEEEEEecC-Cccc--------CCcc-cccc-hhhc------------cccccccccCC-
Confidence 9999996 6999999999999999999 5431 3333 2222 1122 22333343332
Q ss_pred ccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCceeecC
Q 012148 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSK 311 (470)
Q Consensus 232 ~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~GG~Ii~F~~g~pt~GpG~l~~~ 311 (470)
..++||++++||++.|.++|++|+++ +.+++++.||+|+||++|..+|+ ..||||++|++|+||.|||+|+.+
T Consensus 388 ~~~~~Lv~l~e~~~~I~~lLe~L~~~---~~~~~~~~~~~G~AL~aA~~lL~----~~GGrI~~F~sg~Pt~GpG~l~~r 460 (926)
T 1m2v_B 388 RPNSMVVSLKACRQNIETLLTKIPQI---FQSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLPNLGIGKLQRR 460 (926)
T ss_dssp CSSSSSEETTTTHHHHHHHHHHHHHH---TSSCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCCCSSTTCCCCC
T ss_pred CcccccccHHHHHHHHHHHHHhhhhh---hcCCCCCCccHHHHHHHHHHHHH----hhCCEEEEEecCCCCCCCCccccc
Confidence 34899999999999999999999985 67788999999999999999998 789999999999999999999998
Q ss_pred CCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChhhchhhhcccCceEEEcCCCCchhhH-
Q 012148 312 NLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFK- 390 (470)
Q Consensus 312 ~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~- 390 (470)
+++ .|+++++|++++++++.+||++||++|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+.++++
T Consensus 461 e~~----~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d 536 (926)
T 1m2v_B 461 NES----GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPND 536 (926)
T ss_dssp CC--------CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHH
T ss_pred ccc----cccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhH
Confidence 765 367888888669999999999999999999999999999999999999999999999999999999987543
Q ss_pred -----HHHHHHHhccccccceeeEEEEEecccccceeeeecCCeeeeEEEeCceecchhhhHhhhhhhcCCCccchhhcc
Q 012148 391 -----DSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQQDLS 465 (470)
Q Consensus 391 -----~~l~~~l~~~~~~~~~~~~~~lr~~~~~~~v~~r~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
.++.+.+ .+++||+|+|| | |||+||+|+++|||++.++.++.++ +.+++|++|+.+++
T Consensus 537 ~~kf~~dl~~~L-----t~~~gf~a~mr-------V--R~S~glkv~~~~G~~~~~~s~~~~l---~~l~~d~s~av~f~ 599 (926)
T 1m2v_B 537 IVKFSTEFAKHI-----SMDFCMETVMR-------A--RGSTGLRMSRFYGHFFNRSSDLCAF---STMPRDQSYLFEVN 599 (926)
T ss_dssp HHHHHHHHHHHH-----HSCCEEEEEEE-------E--EECTTEEEEEEESSSBCSSTTEEEE---EEECSSCCEEEEEE
T ss_pred HHHHHHHHHHHh-----hhhhceeEEEE-------E--EeCCCcEEEEeecCccccCcCceEe---eccCCCCEEEEEEE
Confidence 3444443 34689999999 9 9999999999999999999887666 46899999999999
Q ss_pred cccC
Q 012148 466 LSEH 469 (470)
Q Consensus 466 ~~~~ 469 (470)
++|.
T Consensus 600 ~~~~ 603 (926)
T 1m2v_B 600 VDES 603 (926)
T ss_dssp ECSB
T ss_pred eccC
Confidence 8874
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.64 E-value=2.8e-17 Score=121.24 Aligned_cols=52 Identities=50% Similarity=1.128 Sum_probs=46.1
Q ss_pred CCCCCccccC--CCeeeCCCceEEcCCceEEeCCCCCCCCCCccccCCCCCCCC
Q 012148 54 LPYAPLRCRT--CRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLP 105 (470)
Q Consensus 54 v~~~~~RC~~--C~aYiNp~~~~~~~g~~w~C~~C~~~N~vp~~y~~~~~~~~~ 105 (470)
.+++|+||++ |+||||||++|+.++++|+|+||++.|.+|++|+.+++.++|
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~nlP 58 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP 58 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHHSC
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCcccCC
Confidence 3578999999 999999999999999999999999999999999876554443
No 9
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=4.8e-07 Score=84.10 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=112.6
Q ss_pred CCCEEEEEEEcccchh-------hHHHHHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCH
Q 012148 128 VPPVFMFVVDTCIIEE-------EMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSK 200 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~-------~~~~l~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~ 200 (470)
.+..++||||+|.+.. .+..+++.+...++.++ +.+||+|+|++..+..-
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~---------------------- 66 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQL---------------------- 66 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEE----------------------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeC----------------------
Confidence 4678999999999865 46778999999999987 77999999997754331
Q ss_pred HHHHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHH
Q 012148 201 DQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS 280 (470)
Q Consensus 201 ~~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ 280 (470)
|+......+..+|+.|.... .......++.||..|..
T Consensus 67 --------------------------------------~~~~~~~~~~~~l~~l~~~~-----~~~g~T~l~~al~~a~~ 103 (218)
T 3ibs_A 67 --------------------------------------PITSDYISAKMFLESISPSL-----ISKQGTAIGEAINLATR 103 (218)
T ss_dssp --------------------------------------EEESCHHHHHHHHHTCCGGG-----CCSCSCCHHHHHHHHHT
T ss_pred --------------------------------------CCCCCHHHHHHHHHhcCccc-----CCCCCCcHHHHHHHHHH
Confidence 00111234566666665321 11234678999999998
Q ss_pred HHhccCCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCC
Q 012148 281 LLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (470)
Q Consensus 281 ll~~~~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~ 360 (470)
++... +.....|++++.|.++.| -..+.+..+.+.||.|..+.+..+
T Consensus 104 ~l~~~-~~~~~~ivllTDG~~~~~--------------------------------~~~~~~~~~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 104 SFTPQ-EGVGRAIIVITDGENHEG--------------------------------GAVEAAKAAAEKGIQVSVLGVGMP 150 (218)
T ss_dssp TSCSC-SSCCEEEEEEECCTTCCS--------------------------------CHHHHHHHHHTTTEEEEEEEESCT
T ss_pred HHhhC-CCCCcEEEEEcCCCCCCC--------------------------------cHHHHHHHHHhcCCEEEEEEecCC
Confidence 87631 234467888888876544 013567777889999988877653
Q ss_pred ------------------------ccChhhchhhhcccCceEEEcCCCC
Q 012148 361 ------------------------QVGVAELKVAVEKTGGLVVLSDSFG 385 (470)
Q Consensus 361 ------------------------~~~l~~l~~l~~~TGG~v~~y~~f~ 385 (470)
..+...|..+|..|||..++..+-.
T Consensus 151 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~ 199 (218)
T 3ibs_A 151 EGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSN 199 (218)
T ss_dssp TCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSS
T ss_pred CCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCCh
Confidence 4677889999999999988887643
No 10
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.70 E-value=2.8e-06 Score=88.67 Aligned_cols=199 Identities=15% Similarity=0.104 Sum_probs=134.2
Q ss_pred CCEEEEEEEcccchh----hHHHHHHHHHHHhhcCCCCceEEEEEECCeEEEEE-cCCCCCCCCceeeecCCcccCHHHH
Q 012148 129 PPVFMFVVDTCIIEE----EMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 129 ~p~~vFvID~S~~~~----~~~~l~~~l~~~l~~lp~~~~VglITfd~~V~~y~-l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
+..++||||+|.+.. .+..++++++..++.|+++.+||||+|++....+- ++ .
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t-~--------------------- 134 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTG-G--------------------- 134 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSS-S---------------------
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCC-c---------------------
Confidence 456999999999876 36678999999999999999999999998876542 11 0
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeec-cchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHH
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPA-FDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~-~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll 282 (470)
.+.+. ...+..+.+.|+.|.. .....++.||..|..++
T Consensus 135 --------------------------------~l~~~~~~~~~~l~~~I~~L~~---------~GgT~l~~aL~~A~~~l 173 (464)
T 4fx5_A 135 --------------------------------QLLRADYQSRAAAKEAVGRLHA---------NGGTAMGRWLAQAGRIF 173 (464)
T ss_dssp --------------------------------SCEECSHHHHHHHHHHHHTCCC---------CSCCCHHHHHHHHHHHH
T ss_pred --------------------------------ccccCCHHHHHHHHHHHHcCCC---------CCCCcHHHHHHHHHHHH
Confidence 00011 1134456666666643 12467999999999998
Q ss_pred hccCCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCcc
Q 012148 283 GACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQV 362 (470)
Q Consensus 283 ~~~~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~ 362 (470)
.. .+.....|++++.|.++.+. + ..... +.+....+|.+..|.+.. ..
T Consensus 174 ~~-~~~~~~~IILLTDG~~~~~~---------------------------~-~~l~~--~~~a~~~~i~i~tiGiG~-~~ 221 (464)
T 4fx5_A 174 DT-APSAIKHAILLTDGKDESET---------------------------P-ADLAR--AIQSSIGNFTADCRGIGE-DW 221 (464)
T ss_dssp TT-CTTSEEEEEEEESSCCTTSC---------------------------H-HHHHH--HHHHHTTTCEEEEEEESS-SS
T ss_pred hc-CCCCCCEEEEEcCCCCCCCC---------------------------h-HHHHH--HHHHhcCCCeEEEEEeCC-cc
Confidence 73 22333578888888765421 0 01111 222345788888887754 47
Q ss_pred ChhhchhhhcccCceEEEcCCCCchhhHHHHHHHHhccccccceeeEEEEEecccccceeeeecCCeeeeEEE
Q 012148 363 GVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTII 435 (470)
Q Consensus 363 ~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~l~~~l~~~~~~~~~~~~~~lr~~~~~~~v~~r~S~gl~i~~~~ 435 (470)
+-..|..++..|||..++.++... +...+.+++... .....-++.++ + ++..|+.+..+.
T Consensus 222 d~~~L~~IA~~tgG~~~~v~d~~~--L~~~f~~i~~~~--~s~~~~dv~l~-------l--~~~~g~~v~~v~ 281 (464)
T 4fx5_A 222 EPKELRKIADALLGTVGIIRDPAT--LAEDFREMTAKS--MGKEVADVALR-------L--WAPKGATIRYVK 281 (464)
T ss_dssp CHHHHHHHHHHTTCCEEEESSGGG--HHHHHHHHHHHH--HTCCEEEEEEE-------E--ECCTTCEEEEEE
T ss_pred CHHHHHHHHHhCCCEEEEcCCHHH--HHHHHHHHHHHh--hchheeeeEEE-------E--EeCCCcEEEEEE
Confidence 788999999999999998887654 344455555332 12345677888 9 999998887663
No 11
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.32 E-value=1.9e-05 Score=73.81 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=106.1
Q ss_pred CCCEEEEEEEcccchhhHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHHHH
Q 012148 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~~~~l~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
.+.-++||||.|.+......+++.++..++.+. ++.+||+|+|++..+.. .+. .
T Consensus 21 ~~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~-~--------------------- 78 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN-K--------------------- 78 (223)
T ss_dssp -CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTT-T---------------------
T ss_pred CcceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecC-C---------------------
Confidence 356799999999988777888999999988874 68999999999876532 111 0
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHH-H
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL-L 282 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~l-l 282 (470)
+ . ....+.+.|+.+... ......+|.||..|... +
T Consensus 79 --------------------------------~----~-~~~~~~~~i~~l~~~-------gG~~T~~~~aL~~a~~~l~ 114 (223)
T 2b2x_A 79 --------------------------------Y----S-STEEVLVAANKIVQR-------GGRQTMTALGIDTARKEAF 114 (223)
T ss_dssp --------------------------------C----C-SHHHHHHHHTTCCCC-------CCSSCCHHHHHHHHHHTTS
T ss_pred --------------------------------C----C-CHHHHHHHHHhhhcc-------CCCCccHHHHHHHHHHHhc
Confidence 0 0 112334444444321 11236789999999876 3
Q ss_pred hc---cCCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccC
Q 012148 283 GA---CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (470)
Q Consensus 283 ~~---~~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~ 359 (470)
.. ........|++++.|.++.|. -..+.++.+.+.||.|..+....
T Consensus 115 ~~~~~~~~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~v~~igvG~ 163 (223)
T 2b2x_A 115 TEARGARRGVKKVMVIVTDGESHDNY-------------------------------RLKQVIQDCEDENIQRFSIAILG 163 (223)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCTTGG-------------------------------GHHHHHHHHHTTTEEEEEEEECG
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecC
Confidence 31 111223457788888765431 02356677778898877776643
Q ss_pred CccC---------hhhchhhhcc-cCceEEEcCCCCc
Q 012148 360 DQVG---------VAELKVAVEK-TGGLVVLSDSFGH 386 (470)
Q Consensus 360 ~~~~---------l~~l~~l~~~-TGG~v~~y~~f~~ 386 (470)
+ .+ ...|..++.. |||.+|..++++.
T Consensus 164 ~-~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~ 199 (223)
T 2b2x_A 164 H-YNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 199 (223)
T ss_dssp G-GC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTG
T ss_pred c-cccccccchhHHHHHHHHhCCCchhcEEEeCCHHH
Confidence 2 22 4788999998 9999999887765
No 12
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.29 E-value=2.8e-05 Score=71.32 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=106.2
Q ss_pred CCCEEEEEEEcccchhhHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHHHH
Q 012148 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~~~~l~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
.+.-++||||+|.+...+..+++.++..++.+. ++.+||+|+|++..+.. .+. .
T Consensus 5 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~-~--------------------- 62 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN-T--------------------- 62 (200)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT-T---------------------
T ss_pred CcccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC-C---------------------
Confidence 356789999999987777788999999998885 68999999999876532 111 0
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHH-H
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL-L 282 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~l-l 282 (470)
+ ..+..+.+.|+.++.. . .....+|.||..|... +
T Consensus 63 --------------------------------~-----~~~~~~~~~i~~l~~~----~---G~~T~~~~al~~a~~~~~ 98 (200)
T 1v7p_C 63 --------------------------------Y-----KTKEEMIVATSQTSQY----G---GDLTNTFGAIQYARKYAY 98 (200)
T ss_dssp --------------------------------C-----SSHHHHHHHHHHCCCC----C---CSCCCHHHHHHHHHHHTT
T ss_pred --------------------------------c-----CCHHHHHHHHHhhhcc----C---CCCCcHHHHHHHHHHhhc
Confidence 0 0122455566666431 0 1236799999999884 4
Q ss_pred hcc---CCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccC
Q 012148 283 GAC---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (470)
Q Consensus 283 ~~~---~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~ 359 (470)
... .+.....|++++.|.++.+. -..+.++++.+.||.|..+....
T Consensus 99 ~~~~g~r~~~~~~ivllTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 99 SAASGGRRSATKVMVVVTDGESHDGS-------------------------------MLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCSCGG-------------------------------GHHHHHHHHHHTTEEEEEEEECH
T ss_pred ccccCCCCCCCeEEEEEccCCCCCcc-------------------------------cHHHHHHHHHHCCCEEEEEEecc
Confidence 311 11222357888888764220 02356777778898777766521
Q ss_pred ----CccC----hhhchhhhcccCce-EEEcCCCCc
Q 012148 360 ----DQVG----VAELKVAVEKTGGL-VVLSDSFGH 386 (470)
Q Consensus 360 ----~~~~----l~~l~~l~~~TGG~-v~~y~~f~~ 386 (470)
..++ ..+|..++..|||. +|..++++.
T Consensus 148 ~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 183 (200)
T 1v7p_C 148 YLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAA 183 (200)
T ss_dssp HHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGG
T ss_pred cccccccchhhHHHHHHHHhCCccHhcEEEcCCHHH
Confidence 2344 56799999999885 566777764
No 13
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=7.7e-06 Score=78.87 Aligned_cols=147 Identities=18% Similarity=0.105 Sum_probs=100.3
Q ss_pred EEEEEEEcccchhh-------HHHHHHHHHHHhh---cCCCCceEEEEEECCe-EEEEEcCCCCCCCCceeeecCCcccC
Q 012148 131 VFMFVVDTCIIEEE-------MSFLKSALSQAID---LLPDNSLVGLITFGTL-VQVHELGGFGQIIPKTYVFKGSKDVS 199 (470)
Q Consensus 131 ~~vFvID~S~~~~~-------~~~l~~~l~~~l~---~lp~~~~VglITfd~~-V~~y~l~~~~~~~~~~~v~~g~~~~t 199 (470)
+.|||||+|.+... +...++++...++ ..++..+||||+|... ..++
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 57999999998642 5566666666555 4456789999999632 2221
Q ss_pred HHHHHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHH
Q 012148 200 KDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA 279 (470)
Q Consensus 200 ~~~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~ 279 (470)
+|+......|...|+.|... ....++.||..|.
T Consensus 63 --------------------------------------~plT~D~~~il~aL~~l~~~---------G~T~l~~gL~~A~ 95 (268)
T 4b4t_W 63 --------------------------------------STFTAEFGKILAGLHDTQIE---------GKLHMATALQIAQ 95 (268)
T ss_dssp --------------------------------------EEEESCHHHHHHHHTTCCCC---------SCCCHHHHHHHHH
T ss_pred --------------------------------------cCCcchHHHHHHHhhhcCcC---------CCCChHHHHHHHH
Confidence 11112234667777766431 2357899999999
Q ss_pred HHHhccCC-CCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeecc
Q 012148 280 SLLGACVP-GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (470)
Q Consensus 280 ~ll~~~~~-~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s 358 (470)
.+|+.... ..--||++|++|+-+. ..+-..++++++.++||.||++.+.
T Consensus 96 ~aLk~~~~k~~~~rIIlf~ds~~~~------------------------------~~~~l~~lak~lkk~gI~v~vIgFG 145 (268)
T 4b4t_W 96 LTLKHRQNKVQHQRIVAFVCSPISD------------------------------SRDELIRLAKTLKKNNVAVDIINFG 145 (268)
T ss_dssp HHHHTCSCTTSEEEEEEEECSCCSS------------------------------CHHHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHhcccCCCceEEEEEECCCCCC------------------------------CHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 99974332 2234799999985210 0234578999999999999999998
Q ss_pred CCccChhhchhhhcccCc
Q 012148 359 LDQVGVAELKVAVEKTGG 376 (470)
Q Consensus 359 ~~~~~l~~l~~l~~~TGG 376 (470)
.+..+-..|..++....|
T Consensus 146 ~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 146 EIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp SCCSSCCHHHHHHHHHCS
T ss_pred CCccchHHHHHHHHHhcC
Confidence 766677778888776655
No 14
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.29 E-value=3e-05 Score=71.33 Aligned_cols=163 Identities=9% Similarity=0.096 Sum_probs=105.9
Q ss_pred CCCEEEEEEEcccchh--hHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHH
Q 012148 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~--~~~~l~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~ 201 (470)
.+.-++||||.|.+.. ....+++.++..++.++ ++.|||+|+|++..+.. .+. .
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~-~------------------- 71 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK-D------------------- 71 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT-C-------------------
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC-C-------------------
Confidence 3567999999999754 45678899999998886 57899999999886542 111 0
Q ss_pred HHHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHH-H
Q 012148 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-S 280 (470)
Q Consensus 202 ~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~-~ 280 (470)
+ ..++.+...|++|+.. ......+|.||..|. .
T Consensus 72 ----------------------------------~-----~~~~~~~~~i~~l~~~-------gg~~T~~~~aL~~a~~~ 105 (202)
T 1ijb_A 72 ----------------------------------R-----KRPSELRRIASQVKYA-------GSQVASTSEVLKYTLFQ 105 (202)
T ss_dssp ----------------------------------C-----CCHHHHHHHHHTCCCC-------CBSCCCHHHHHHHHHHH
T ss_pred ----------------------------------C-----CCHHHHHHHHHhCcCC-------CCCcCcHHHHHHHHHHH
Confidence 0 0123566667766531 112367999999987 4
Q ss_pred HHhcc-CCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccC
Q 012148 281 LLGAC-VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (470)
Q Consensus 281 ll~~~-~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~ 359 (470)
++... .....-.|++++.|.++.|. . +-..+.++.+.+.||.|-.+....
T Consensus 106 ~~~~~~r~~~~~~iillTDG~~~~~~-----~------------------------~~~~~~a~~l~~~gi~i~~igvG~ 156 (202)
T 1ijb_A 106 IFSKIDRPEASRIALLLMASQEPQRM-----S------------------------RNFVRYVQGLKKKKVIVIPVGIGP 156 (202)
T ss_dssp TSSSCSCTTSEEEEEEEECCCCCGGG-----C------------------------TTHHHHHHHHHHTTEEEEEEEEST
T ss_pred HhccCCCCCCCeEEEEEccCCCCccc-----h------------------------HHHHHHHHHHHHCCCEEEEEecCC
Confidence 44311 11222357777888654320 0 011345666777888666655533
Q ss_pred CccChhhchhhhcc-cCceEEEcCCCCc
Q 012148 360 DQVGVAELKVAVEK-TGGLVVLSDSFGH 386 (470)
Q Consensus 360 ~~~~l~~l~~l~~~-TGG~v~~y~~f~~ 386 (470)
.++..+|..++.. +||.+|..++|+.
T Consensus 157 -~~~~~~L~~iA~~~~~~~~~~~~~~~~ 183 (202)
T 1ijb_A 157 -HANLKQIRLIEKQAPENKAFVLSSVDE 183 (202)
T ss_dssp -TSCHHHHHHHHHHCTTCCCEEESSGGG
T ss_pred -cCCHHHHHHHhCCCCcccEEEeCCHHH
Confidence 4788899999984 6889999988865
No 15
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.28 E-value=2.6e-05 Score=72.28 Aligned_cols=173 Identities=15% Similarity=0.103 Sum_probs=105.0
Q ss_pred CCCEEEEEEEcccchhh--HHHHHHHHHHHhhcC---CCCceEEEEEECCeEEEEE-cCCCCCCCCceeeecCCcccCHH
Q 012148 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKD 201 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~--~~~l~~~l~~~l~~l---p~~~~VglITfd~~V~~y~-l~~~~~~~~~~~v~~g~~~~t~~ 201 (470)
.+.-++||||.|.+... +..+++.+...++.+ +++.+||+|+|++..+..- +. .
T Consensus 14 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~-~------------------- 73 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS-E------------------- 73 (223)
T ss_dssp -CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTT-S-------------------
T ss_pred CceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccc-c-------------------
Confidence 46789999999998654 556777777776544 5578999999998865431 11 0
Q ss_pred HHHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHH
Q 012148 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (470)
Q Consensus 202 ~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~l 281 (470)
+.....+.+...|+.|.... ........++.||..|...
T Consensus 74 -------------------------------------~~~~~~~~~~~~i~~l~~~~----~~~~g~T~~~~aL~~a~~~ 112 (223)
T 1q0p_A 74 -------------------------------------ADSSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSM 112 (223)
T ss_dssp -------------------------------------GGGGCHHHHHHHHHTCCTTS----CSCTTCCCHHHHHHHHHHH
T ss_pred -------------------------------------CCCCCHHHHHHHHHhccccc----ccCCCCccHHHHHHHHHHH
Confidence 00112335667777765420 0123457799999999998
Q ss_pred HhccCC-------CCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHH------HHHHHhc
Q 012148 282 LGACVP-------GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDAL------SKQLVHQ 348 (470)
Q Consensus 282 l~~~~~-------~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~l------a~~~~~~ 348 (470)
|..... .....|++++.|.++.|.- + ....+-.+++ ++.+.+.
T Consensus 113 l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~---------~---------------~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
T 1q0p_A 113 MSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD---------P---------------ITVIDEIRDLLYIGKDRKNPRED 168 (223)
T ss_dssp HCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC---------T---------------HHHHHHHHHHTTCSCBTTBCCGG
T ss_pred hhccccccccccccCCeEEEEECCCCCCCCCC---------h---------------HHHHHHHHHHHhhhhhhhhcccC
Confidence 863111 1223578888898876620 0 0000111111 1223456
Q ss_pred CeEEEEeeccCCccChhhchhhhcccCc--eEEEcCCCCc
Q 012148 349 GHVLDLFACALDQVGVAELKVAVEKTGG--LVVLSDSFGH 386 (470)
Q Consensus 349 gisvdlF~~s~~~~~l~~l~~l~~~TGG--~v~~y~~f~~ 386 (470)
||.|..+.+.. .++...|..++..+|| .+|..++++.
T Consensus 169 ~i~i~~igvG~-~~~~~~L~~iA~~~~G~~~~~~~~~~~~ 207 (223)
T 1q0p_A 169 YLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKVKDMEN 207 (223)
T ss_dssp GEEEEEEECSS-CCCHHHHHHHSCCCTTCCCEEETTC---
T ss_pred CcEEEEEEecC-cCCHHHHHHHhcCCCCCceEEEcCCHHH
Confidence 77666665543 5788899999999999 7887776643
No 16
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.24 E-value=8.4e-05 Score=67.32 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=105.2
Q ss_pred CCCEEEEEEEcccchh--hHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHH
Q 012148 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~--~~~~l~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~ 201 (470)
.+.-.+||||.|.+.. ....+++.+...++.++ ++.+||+|+|++..+.. .+. .
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~------------------- 63 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWN-V------------------- 63 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-C-------------------
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecC-C-------------------
Confidence 3567899999999864 36678888888888875 45899999999876532 111 0
Q ss_pred HHHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHH
Q 012148 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (470)
Q Consensus 202 ~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~l 281 (470)
...++.+...++.++.. .....+|.||..|...
T Consensus 64 ---------------------------------------~~~~~~~~~~i~~l~~~--------~g~T~~~~aL~~a~~~ 96 (189)
T 1atz_A 64 ---------------------------------------VPEKAHLLSLVDVMQRE--------GGPSQIGDALGFAVRY 96 (189)
T ss_dssp ---------------------------------------CCCHHHHHHHHHTCCCC--------CCCCCHHHHHHHHHHH
T ss_pred ---------------------------------------CCCHHHHHHHHHhCcCC--------CCcchHHHHHHHHHHH
Confidence 00123566666666431 2346799999999988
Q ss_pred HhccC---CCCCcE-EEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeec
Q 012148 282 LGACV---PGSGAR-ILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (470)
Q Consensus 282 l~~~~---~~~GG~-Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~ 357 (470)
+.... .....+ ++++++|.++.. ..+.++.+.+.||.|..+..
T Consensus 97 l~~~~~g~r~~~~~~vivltdg~~~~~---------------------------------~~~~~~~~~~~gi~v~~igv 143 (189)
T 1atz_A 97 LTSEMHGARPGASKAVVILVTDVSVDS---------------------------------VDAAADAARSNRVTVFPIGI 143 (189)
T ss_dssp HHSCCTTCCTTSEEEEEEEECSCCSSC---------------------------------CHHHHHHHHHTTEEEEEEEE
T ss_pred HhccccCCCCCCCcEEEEEeCCCCCch---------------------------------HHHHHHHHHHCCCEEEEEEc
Confidence 75311 111235 667777643210 13566677788987777766
Q ss_pred cCCccChhhchhhhcccCc-eEEEcCCCCc
Q 012148 358 ALDQVGVAELKVAVEKTGG-LVVLSDSFGH 386 (470)
Q Consensus 358 s~~~~~l~~l~~l~~~TGG-~v~~y~~f~~ 386 (470)
.. ..+...|..++..++| .++...+|+.
T Consensus 144 G~-~~~~~~L~~iA~~~~~~~~~~~~~~~~ 172 (189)
T 1atz_A 144 GD-RYDAAQLRILAGPAGDSNVVKLQRIED 172 (189)
T ss_dssp SS-SSCHHHHHHHTGGGGGGGCEEESSTTH
T ss_pred CC-cCCHHHHHHHHCCCcccCEEEecChhh
Confidence 43 4688899999998875 5777777764
No 17
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.23 E-value=2.1e-05 Score=72.93 Aligned_cols=162 Identities=11% Similarity=0.054 Sum_probs=106.0
Q ss_pred CCCEEEEEEEcccchhhHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHHHH
Q 012148 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~~~~l~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
.+.-++||||.|.+....+.+++.++..++.+. ++.+||+|+|++.++.. .+. .
T Consensus 6 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~-~--------------------- 63 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN-K--------------------- 63 (213)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTT-T---------------------
T ss_pred CCccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEecc-c---------------------
Confidence 367899999999988777888889998888774 78999999999876532 111 0
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHH-
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL- 282 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll- 282 (470)
+ .....+.+.|+.+... ......+|.||..|...+
T Consensus 64 --------------------------------~-----~~~~~~~~~i~~l~~~-------~G~~T~~~~aL~~a~~~l~ 99 (213)
T 1pt6_A 64 --------------------------------Y-----SSTEEVLVAAKKIVQR-------GGRQTMTALGTDTARKEAF 99 (213)
T ss_dssp --------------------------------C-----SSHHHHHHHHHTCCCC-------CCSSCCHHHHHHHHHHTTT
T ss_pred --------------------------------c-----CCHHHHHHHHHhccCC-------CCCcccHHHHHHHHHHHhc
Confidence 0 0122344455554321 111356899999998763
Q ss_pred hc---cCCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccC
Q 012148 283 GA---CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (470)
Q Consensus 283 ~~---~~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~ 359 (470)
.. ........|++++.|.++.|. -+.+.++++.+.||.|..+....
T Consensus 100 ~~~~~~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igig~ 148 (213)
T 1pt6_A 100 TEARGARRGVKKVMVIVTDGESHDNH-------------------------------RLKKVIQDCEDENIQRFSIAILG 148 (213)
T ss_dssp SGGGTCCTTCEEEEEEEESSCCSCSH-------------------------------HHHHHHHHHHHTTEEEEEEEECH
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecc
Confidence 31 111233457788888655331 12456777788898777766543
Q ss_pred Cc----cC----hhhchhhhcc-cCceEEEcCCCCc
Q 012148 360 DQ----VG----VAELKVAVEK-TGGLVVLSDSFGH 386 (470)
Q Consensus 360 ~~----~~----l~~l~~l~~~-TGG~v~~y~~f~~ 386 (470)
+. ++ ...|..++.. |||.+|..++++.
T Consensus 149 ~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~ 184 (213)
T 1pt6_A 149 SYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 184 (213)
T ss_dssp HHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred ccccccccchhhHHHHHHHhCCCchhcEEEeCCHHH
Confidence 21 11 3688899998 7899999988765
No 18
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.22 E-value=0.0001 Score=65.93 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=99.8
Q ss_pred CCCEEEEEEEcccchhhHH-HHHHHHHHHhhc-CCCCceEEEEEECCeEEEEE-cCCCCCCCCceeeecCCcccCHHHHH
Q 012148 128 VPPVFMFVVDTCIIEEEMS-FLKSALSQAIDL-LPDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQLL 204 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~~~-~l~~~l~~~l~~-lp~~~~VglITfd~~V~~y~-l~~~~~~~~~~~v~~g~~~~t~~~i~ 204 (470)
.+.-++|+||.|.+..... ..++.+++.+.. +.++.+||+|+|++..+..- +.
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~------------------------ 60 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT------------------------ 60 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE------------------------
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC------------------------
Confidence 3668999999999865422 123344444433 34689999999998755331 11
Q ss_pred HHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhc
Q 012148 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA 284 (470)
Q Consensus 205 ~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~ 284 (470)
.....+..+|+.|... .+ .....++.||..|...+..
T Consensus 61 -------------------------------------~~~~~~~~~l~~l~~~---~~---~g~T~~~~al~~a~~~l~~ 97 (182)
T 1shu_X 61 -------------------------------------GDRGKISKGLEDLKRV---SP---VGETYIHEGLKLANEQIQK 97 (182)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHTC---CC---CSCCCHHHHHHHHHHHHHH
T ss_pred -------------------------------------CCHHHHHHHHHhcccC---CC---CCCchHHHHHHHHHHHHHh
Confidence 1122455666666532 11 1246789999999998863
Q ss_pred cC-CCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccC
Q 012148 285 CV-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVG 363 (470)
Q Consensus 285 ~~-~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~ 363 (470)
.. ......|++++.|.++.+ ......+.++.+.+.||.|..+... ..+
T Consensus 98 ~~~~~~~~~iiliTDG~~~~~-----------------------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~ 146 (182)
T 1shu_X 98 AGGLKTSSIIIALTDGKLDGL-----------------------------VPSYAEKEAKISRSLGASVYCVGVL--DFE 146 (182)
T ss_dssp HTGGGSCEEEEEEECCCCCTT-----------------------------HHHHHHHHHHHHHHTTCEEEEEECS--SCC
T ss_pred ccCCCCCeEEEEECCCCcCCC-----------------------------CchhHHHHHHHHHhCCCEEEEEeCC--cCC
Confidence 21 134467788888865321 0123356777788899877777664 567
Q ss_pred hhhchhhhcccCceEEEcC-CCC
Q 012148 364 VAELKVAVEKTGGLVVLSD-SFG 385 (470)
Q Consensus 364 l~~l~~l~~~TGG~v~~y~-~f~ 385 (470)
-..|..++..+||. |+.. ++.
T Consensus 147 ~~~L~~ia~~~~~~-~~~~~~~~ 168 (182)
T 1shu_X 147 QAQLERIADSKEQV-FPVKGGFQ 168 (182)
T ss_dssp HHHHHHHSSSGGGE-EESSSTTH
T ss_pred HHHHHHHhCCCCce-EEccCCHH
Confidence 88899999999774 4444 444
No 19
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.21 E-value=2.8e-05 Score=75.41 Aligned_cols=165 Identities=12% Similarity=0.046 Sum_probs=106.9
Q ss_pred CCCEEEEEEEcccchhh--H-HHHHHHHHHHhhcCCC---CceEEEEEECCeEEE-EEcCCCCCCCCceeeecCCcccCH
Q 012148 128 VPPVFMFVVDTCIIEEE--M-SFLKSALSQAIDLLPD---NSLVGLITFGTLVQV-HELGGFGQIIPKTYVFKGSKDVSK 200 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~--~-~~l~~~l~~~l~~lp~---~~~VglITfd~~V~~-y~l~~~~~~~~~~~v~~g~~~~t~ 200 (470)
.+.-++||||.|.+... . ..++++++..++.++. +.+||||+|++.++. +.+. ...
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~-~~~---------------- 82 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLH-SDA---------------- 82 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEEC-SSC----------------
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEcc-ccC----------------
Confidence 46679999999998654 3 5578899999988874 789999999988743 3333 100
Q ss_pred HHHHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHH
Q 012148 201 DQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS 280 (470)
Q Consensus 201 ~~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ 280 (470)
...+..+...|+.|.... .. .....+|.||..|..
T Consensus 83 ----------------------------------------~~~~~~l~~~i~~l~~~~--~~---~G~T~~~~aL~~a~~ 117 (281)
T 4hqf_A 83 ----------------------------------------SKNKEKALIIIKSLLSTN--LP---YGKTSLTDALLQVRK 117 (281)
T ss_dssp ----------------------------------------SSCHHHHHHHHHHHHHTT--GG---GCSCCHHHHHHHHHH
T ss_pred ----------------------------------------ccCHHHHHHHHHHHhhcc--CC---CCCccHHHHHHHHHH
Confidence 001224555555554210 01 124679999999988
Q ss_pred HHhccC--CCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeecc
Q 012148 281 LLGACV--PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (470)
Q Consensus 281 ll~~~~--~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s 358 (470)
.+.... .+....|++++.|.++.+ .-..+.++.+.+.||.|-.+.+.
T Consensus 118 ~l~~~~~r~~~~~~iillTDG~~~d~-------------------------------~~~~~~~~~l~~~gv~i~~igiG 166 (281)
T 4hqf_A 118 HLNDRINRENANQLVVILTDGIPDSI-------------------------------QDSLKESRKLSDRGVKIAVFGIG 166 (281)
T ss_dssp HHHTSCCCTTCEEEEEEEESSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEEES
T ss_pred HHHhccCCCCCCEEEEEEecCCCCCc-------------------------------HHHHHHHHHHHHCCCEEEEEeCC
Confidence 776210 112234777777765411 12245677777889877666654
Q ss_pred CCccChhhchhhhcc--cCc--eEEEcCCCCc
Q 012148 359 LDQVGVAELKVAVEK--TGG--LVVLSDSFGH 386 (470)
Q Consensus 359 ~~~~~l~~l~~l~~~--TGG--~v~~y~~f~~ 386 (470)
. ..+-..|..++.. +|| .+|...+|+.
T Consensus 167 ~-~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 167 Q-GINVAFNRFLVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp S-SCCHHHHHHHTTSCSSSSCCTTEEEECGGG
T ss_pred C-ccCHHHHHhhhCCCCCCCCCceEEecchhh
Confidence 3 3677888888876 676 8888888876
No 20
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.13 E-value=3.4e-05 Score=81.07 Aligned_cols=180 Identities=15% Similarity=0.072 Sum_probs=111.0
Q ss_pred CCCEEEEEEEcccchhh--HHHHHHHHHHHhhcC---CCCceEEEEEECCeEEEEE-cCCCCCCCCceeeecCCcccCHH
Q 012148 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKD 201 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~--~~~l~~~l~~~l~~l---p~~~~VglITfd~~V~~y~-l~~~~~~~~~~~v~~g~~~~t~~ 201 (470)
.+.-++||||.|.+... ...++++++..++.| +++.+||||+|++..+..- +. .
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~------------------- 67 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVL-N------------------- 67 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTT-S-------------------
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEecc-C-------------------
Confidence 36679999999998654 556788888888777 7889999999998766431 11 0
Q ss_pred HHHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHH
Q 012148 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (470)
Q Consensus 202 ~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~l 281 (470)
+.....+.+.+.|+.|.... ........++.||..|..+
T Consensus 68 -------------------------------------~~~~~~~~~~~~l~~l~~~~----~~~~ggT~~~~aL~~a~~~ 106 (509)
T 2odp_A 68 -------------------------------------DNSRDMTEVISSLENANYKD----HENGTGTNTYAALNSVYLM 106 (509)
T ss_dssp -------------------------------------GGGGCHHHHHHHHHTCCGGG----GTTCCSCCHHHHHHHHHHH
T ss_pred -------------------------------------CCCCCHHHHHHHHHhccccc----CCCCCCccHHHHHHHHHHH
Confidence 00012335666677665320 0112456799999999998
Q ss_pred HhccCC----------CCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHH-----HH
Q 012148 282 LGACVP----------GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQ-----LV 346 (470)
Q Consensus 282 l~~~~~----------~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~-----~~ 346 (470)
|..... ..-..|++++.|.++.|. .. .+.-+.+.+. ..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-~~--------------------------~~~~~~~~~~~~~~~~~ 159 (509)
T 2odp_A 107 MNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG-SP--------------------------KTAVDHIREILNINQKR 159 (509)
T ss_dssp HHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-CT--------------------------HHHHHHHHHHTTCCSTT
T ss_pred HhhcccccccccccccccceEEEEECCCCccCCC-Ch--------------------------hHHHHHHHHHhhccccc
Confidence 852110 011357888889877651 00 0001111111 11
Q ss_pred hcCeEEEEeeccCCccChhhchhhhcccCce--EEEcCCCCchhhHHHHHHHH
Q 012148 347 HQGHVLDLFACALDQVGVAELKVAVEKTGGL--VVLSDSFGHAVFKDSVRRVF 397 (470)
Q Consensus 347 ~~gisvdlF~~s~~~~~l~~l~~l~~~TGG~--v~~y~~f~~~~~~~~l~~~l 397 (470)
+.|+.|..+....+..+..+|..++..+||. +++.++++. +.+-+.+++
T Consensus 160 ~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~--l~~~~~~i~ 210 (509)
T 2odp_A 160 NDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKA--LHQVFEHML 210 (509)
T ss_dssp GGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHH--HHHHHHHHE
T ss_pred cCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHH--HHHHHHhhh
Confidence 5677766666654448999999999999998 666665543 334444443
No 21
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.12 E-value=3.8e-05 Score=80.39 Aligned_cols=177 Identities=15% Similarity=0.127 Sum_probs=108.5
Q ss_pred CEEEEEEEcccchh--hHHHHHHHHHHHhhcC---CCCceEEEEEECCeEEEEE-cCCCCCCCCceeeecCCcccCHHHH
Q 012148 130 PVFMFVVDTCIIEE--EMSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 130 p~~vFvID~S~~~~--~~~~l~~~l~~~l~~l---p~~~~VglITfd~~V~~y~-l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
.-++||||.|.+.. .++.+++.++..++.+ +++.+||||+|++..+..- +. .
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~-~--------------------- 59 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS-E--------------------- 59 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-S---------------------
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccc-c---------------------
Confidence 45799999999864 4566777777777654 5679999999998765431 11 0
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHh
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLG 283 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~ 283 (470)
+....++.+.+.|+.|.... ........+|.||..|..++.
T Consensus 60 -----------------------------------~~~~~~~~~~~~l~~l~~~~----~~~~g~T~~~~al~~a~~~l~ 100 (497)
T 1rrk_A 60 -----------------------------------ADSSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSMMS 100 (497)
T ss_dssp -----------------------------------GGGGCHHHHHHHHHHCCGGG----SCCTTCCCHHHHHHHHHHHHC
T ss_pred -----------------------------------ccccCHHHHHHHHHhCcCcc----ccccCccCHHHHHHHHHHHhh
Confidence 00112346677777776321 011235779999999999984
Q ss_pred ccC-------CCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHH---------HHHHHh
Q 012148 284 ACV-------PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDAL---------SKQLVH 347 (470)
Q Consensus 284 ~~~-------~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~l---------a~~~~~ 347 (470)
... ......|++++.|.++.|.... ...+.+ ++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 153 (497)
T 1rrk_A 101 WPDDVPPEGWNRTRHVIILMTDGLHNMGGDPI---------------------------TVIDEIRDLLYIGKDRKNPRE 153 (497)
T ss_dssp CC------CGGGCEEEEEEEECSCCCSSSCTH---------------------------HHHHHHHHHTTCSSCC-CCCG
T ss_pred hhhccccccccccceEEEEEeCCCcccCCChh---------------------------HHHHHHHHHhhhhcccccchh
Confidence 211 1233568889999888764110 000111 111233
Q ss_pred cCeEEEEeeccCCccChhhchhhhcccCc--eEEEcCCCCchhhHHHHHHHH
Q 012148 348 QGHVLDLFACALDQVGVAELKVAVEKTGG--LVVLSDSFGHAVFKDSVRRVF 397 (470)
Q Consensus 348 ~gisvdlF~~s~~~~~l~~l~~l~~~TGG--~v~~y~~f~~~~~~~~l~~~l 397 (470)
.||.|..+... +.++...|..++..+|| .++..++++. +.+-+.+.+
T Consensus 154 ~~i~v~~igvG-~~~~~~~L~~iA~~~~g~~~~~~~~~~~~--l~~~~~~~i 202 (497)
T 1rrk_A 154 DYLDVYVFGVG-PLVNQVNINALASKKDNEQHVCKVKDMEC--LEDVFYQMI 202 (497)
T ss_dssp GGEEEEEEECS-SSCCHHHHHHHSCCCTTCCCEEETTCHHH--HHHHHHHHS
T ss_pred cCeeEEEecCC-CccCHHHHHHHhcCCCCcceEEEeCCHHH--Hhhhhhhcc
Confidence 47766666553 34788999999999999 8887775543 333344433
No 22
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.09 E-value=5e-05 Score=69.09 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=104.4
Q ss_pred CCCEEEEEEEcccchhh--HHHHHHHHHHHhhcC-CCCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHHHH
Q 012148 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~--~~~l~~~l~~~l~~l-p~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
.+.-++||||.|.+... ....++.++..++.+ +++.+||+|+|++.++.. .+. ..
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~---------------------~~ 66 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE---------------------EF 66 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHH---------------------HH
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecC---------------------cc
Confidence 35679999999998654 456788889888888 789999999999886533 111 00
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHH-HHH
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-SLL 282 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~-~ll 282 (470)
.. +..+...|+.+.. ......++.||..|. .++
T Consensus 67 ~~--------------------------------------~~~~~~~i~~l~~--------~~g~T~~~~al~~a~~~l~ 100 (198)
T 1n3y_A 67 RR--------------------------------------SSNPLSLLASVHQ--------LQGFTYTATAIQNVVHRLF 100 (198)
T ss_dssp HH--------------------------------------CSSGGGGGTTCCC--------CCSCBCHHHHHHHHHTTTT
T ss_pred CC--------------------------------------HHHHHHHHhcCcC--------CCCCchHHHHHHHHHHHHh
Confidence 00 0011122223321 113467899999998 444
Q ss_pred hcc---CCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccC
Q 012148 283 GAC---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (470)
Q Consensus 283 ~~~---~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~ 359 (470)
... .......|++++.|.++.++- -+.+.++.+.+.||.|..+....
T Consensus 101 ~~~~~~r~~~~~~iillTDG~~~~~~~------------------------------~~~~~~~~~~~~gi~i~~igvG~ 150 (198)
T 1n3y_A 101 HASYGARRDAAKILIVITDGKKEGDSL------------------------------DYKDVIPMADAAGIIRYAIGVGL 150 (198)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCBSCSS------------------------------CHHHHHHHHHHTTCEEEEEEESG
T ss_pred CcccCCCCCCceEEEEECCCCCCCCcc------------------------------cHHHHHHHHHHCCCEEEEEEccc
Confidence 321 122345688888887763210 02345677788999888777655
Q ss_pred Cc---cChhhchhhhcccCce-EEEcCCCCc
Q 012148 360 DQ---VGVAELKVAVEKTGGL-VVLSDSFGH 386 (470)
Q Consensus 360 ~~---~~l~~l~~l~~~TGG~-v~~y~~f~~ 386 (470)
+. .+...|..++..|||. +|..+++..
T Consensus 151 ~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 181 (198)
T 1n3y_A 151 AFQNRNSWKELNDIASKPSQEHIFKVEDFDA 181 (198)
T ss_dssp GGGSSTTHHHHHHHSCSSSGGGEEEESSGGG
T ss_pred cccccccHHHHHHHHcCCCcccEEEeCCHHH
Confidence 43 3678999999999997 466676654
No 23
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.07 E-value=1.2e-06 Score=79.59 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=97.7
Q ss_pred CCCEEEEEEEcccch--hhHHHHHHHHHHHhhcC-CCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHH
Q 012148 128 VPPVFMFVVDTCIIE--EEMSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (470)
Q Consensus 128 ~~p~~vFvID~S~~~--~~~~~l~~~l~~~l~~l-p~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~ 204 (470)
.+..++||||+|.+. ..+..+++++...++.+ +++.+||+|+|++... . . ++
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~----~---~------~~------------ 58 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAA----Q---V------LL------------ 58 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCC----C---B------CT------------
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCc----e---E------ec------------
Confidence 467899999999986 34567888999888777 8889999999985210 0 0 00
Q ss_pred HHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhc
Q 012148 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA 284 (470)
Q Consensus 205 ~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~ 284 (470)
| .......+...|+.+... ....++.||..|..++..
T Consensus 59 --------------------~--------------~~~~~~~~~~~i~~l~~~---------g~T~~~~al~~a~~~l~~ 95 (189)
T 2x31_A 59 --------------------Q--------------PSRSLTQTKRQLQGLPGG---------GGTPLASGMEMAMVTAKQ 95 (189)
T ss_dssp --------------------T--------------TCSCHHHHHHHHHHCCCC---------BCCCCHHHHHHHHHHHHT
T ss_pred --------------------C--------------CCCCHHHHHHHHhcCCCC---------CCCCHHHHHHHHHHHHHh
Confidence 0 001233566666766431 235689999999998874
Q ss_pred cC-CCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccC
Q 012148 285 CV-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVG 363 (470)
Q Consensus 285 ~~-~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~ 363 (470)
.. +.....|++++.|.++.|+..-...+ + .. +. . .++++.+.+.||.|..+.+... +
T Consensus 96 ~~~~~~~~~ivliTDG~~~~~~~~~~~~~--~-------~~-~~--~--------~~~~~~~~~~gi~v~~ig~g~~--~ 153 (189)
T 2x31_A 96 ARSRGMTPTIALLTDGRGNIALDGTANRE--L-------AG-EQ--A--------TKVARAIRASGMPAVIIDTAMR--P 153 (189)
T ss_dssp CTTTCSSEEEEECCBSCCSSCCTHHHHHG--G-------GT-CC--C--------EEEEECTGGGGSCCTHHHHHHS--S
T ss_pred ccCCCCceEEEEECCCCCCCCCCcccccc--c-------hh-HH--H--------HHHHHHHHHcCCeEEEEecCCC--C
Confidence 22 12345788888899998753100000 0 00 00 0 0011112234443332222222 6
Q ss_pred hhhchhhhcccCceEEEcCCC
Q 012148 364 VAELKVAVEKTGGLVVLSDSF 384 (470)
Q Consensus 364 l~~l~~l~~~TGG~v~~y~~f 384 (470)
...|..++..|||..++.++.
T Consensus 154 ~~~L~~iA~~~~G~~~~~~~~ 174 (189)
T 2x31_A 154 NPALVDLARTMDAHYIALPRA 174 (189)
T ss_dssp CSSSCSTTTEEEESSTTTHHH
T ss_pred HHHHHHHHHhcCCeEEECCCc
Confidence 678999999999986655433
No 24
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.04 E-value=0.00018 Score=64.57 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=99.2
Q ss_pred CCEEEEEEEcccchhh-HHHHHHHHHHHhhc-CCCCceEEEEEECCeEEEEE-cCCCCCCCCceeeecCCcccCHHHHHH
Q 012148 129 PPVFMFVVDTCIIEEE-MSFLKSALSQAIDL-LPDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQLLE 205 (470)
Q Consensus 129 ~p~~vFvID~S~~~~~-~~~l~~~l~~~l~~-lp~~~~VglITfd~~V~~y~-l~~~~~~~~~~~v~~g~~~~t~~~i~~ 205 (470)
+.-++|+||.|.+... ...+++.+++++.. +.++.+||+|+|++..+..- +.
T Consensus 7 ~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~------------------------- 61 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLT------------------------- 61 (185)
T ss_dssp EEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE-------------------------
T ss_pred CeeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccC-------------------------
Confidence 4568999999998643 33345555555544 34689999999998765431 11
Q ss_pred HhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhc-
Q 012148 206 QLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA- 284 (470)
Q Consensus 206 ~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~- 284 (470)
+.++.+...|+.|... .+ .....+|.||..|...+..
T Consensus 62 ------------------------------------~~~~~~~~~i~~l~~~---~~---~g~T~~~~al~~a~~~l~~~ 99 (185)
T 3n2n_F 62 ------------------------------------EDREQIRQGLEELQKV---LP---GGDTYMHEGFERASEQIYYE 99 (185)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHTC---CC---CSCCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------------CCHHHHHHHHHHHhhh---cC---CCCccHHHHHHHHHHHHhhc
Confidence 1233566666776642 11 2346799999999987621
Q ss_pred cC--CCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCcc
Q 012148 285 CV--PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQV 362 (470)
Q Consensus 285 ~~--~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~ 362 (470)
.. ......|++++.|.++.++ ..-..+.++.+.+.||.|..+... ..
T Consensus 100 ~~~~~~~~~~iillTDG~~~~~~-----------------------------~~~~~~~~~~~~~~gi~i~~igvg--~~ 148 (185)
T 3n2n_F 100 NRQGYRTASVIIALTDGELHEDL-----------------------------FFYSEREANRSRDLGAIVYAVGVK--DF 148 (185)
T ss_dssp HTTCBCEEEEEEEEECCCCCHHH-----------------------------HHHHHHHHHHHHHTTEEEEEEECS--SC
T ss_pred cccCCCCCcEEEEEcCCCCCCCc-----------------------------ccchHHHHHHHHHCCCEEEEEEec--cC
Confidence 00 0122467777777543221 001245777888889877766664 67
Q ss_pred ChhhchhhhcccCceEEEcCC-CC
Q 012148 363 GVAELKVAVEKTGGLVVLSDS-FG 385 (470)
Q Consensus 363 ~l~~l~~l~~~TGG~v~~y~~-f~ 385 (470)
+-.+|..++.. +|.+|+..+ |+
T Consensus 149 ~~~~L~~iA~~-~~~~~~~~~~~~ 171 (185)
T 3n2n_F 149 NETQLARIADS-KDHVFPVNDGFQ 171 (185)
T ss_dssp CHHHHTTTSSS-GGGEEEHHHHHH
T ss_pred CHHHHHHHhCC-CCCeEEeccHHH
Confidence 88899999864 578887765 54
No 25
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.03 E-value=0.00014 Score=70.08 Aligned_cols=164 Identities=13% Similarity=0.030 Sum_probs=105.6
Q ss_pred CCEEEEEEEcccchhh--H-HHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHH
Q 012148 129 PPVFMFVVDTCIIEEE--M-SFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (470)
Q Consensus 129 ~p~~vFvID~S~~~~~--~-~~l~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~ 201 (470)
+.-++||||.|.+... . +.+++.++..++.+. ++.+||||+|++.+... .+. .
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~-~------------------- 77 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLG-S------------------- 77 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTT-S-------------------
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecC-C-------------------
Confidence 5678999999998654 3 356888888888886 78999999999886542 121 0
Q ss_pred HHHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHH
Q 012148 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (470)
Q Consensus 202 ~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~l 281 (470)
. . ...+..+...|+.|+... .. .....+|.||..|..+
T Consensus 78 ~-~------------------------------------~~~~~~~~~~i~~l~~~~--~~---~G~T~~~~AL~~a~~~ 115 (266)
T 4hqo_A 78 G-Q------------------------------------SIDKRQALSKVTELRKTY--TP---YGTTSMTAALDEVQKH 115 (266)
T ss_dssp H-H------------------------------------HHCHHHHHHHHHHHHHHC--CC---CSCCCHHHHHHHHHHH
T ss_pred C-C------------------------------------ccCHHHHHHHHHHhhhcc--CC---CCCCCHHHHHHHHHHH
Confidence 0 0 001235666666664100 01 1246799999999988
Q ss_pred Hhcc--CCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccC
Q 012148 282 LGAC--VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (470)
Q Consensus 282 l~~~--~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~ 359 (470)
+... .....-.|++++.|.++. ..-..+.++++.+.||.|-.+.+..
T Consensus 116 l~~~~~r~~~~~~iIllTDG~~~d-------------------------------~~~~~~~a~~l~~~gi~i~~iGiG~ 164 (266)
T 4hqo_A 116 LNDRVNREKAIQLVILMTDGVPNS-------------------------------KYRALEVANKLKQRNVRLAVIGIGQ 164 (266)
T ss_dssp HHTTCSCTTSEEEEEEEECSCCSC-------------------------------HHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred HhhccccCCCCeEEEEEccCCCCC-------------------------------chHHHHHHHHHHHCCCEEEEEecCc
Confidence 8731 011223577777776541 0123467778888998777666643
Q ss_pred CccChhhchhhhccc--Cc--eEEEcCCCCc
Q 012148 360 DQVGVAELKVAVEKT--GG--LVVLSDSFGH 386 (470)
Q Consensus 360 ~~~~l~~l~~l~~~T--GG--~v~~y~~f~~ 386 (470)
..+-..|..++... +| .+|++.+|+.
T Consensus 165 -~~~~~~L~~iA~~~~~~g~~~~~~~~d~~~ 194 (266)
T 4hqo_A 165 -GINHQFNRLIAGCRPREPNCKFYSYADWNE 194 (266)
T ss_dssp -SCCHHHHHHHHTCCTTCSSCTTEECSCHHH
T ss_pred -ccCHHHHHHhhCCCCCCCCCCeEEecCHHH
Confidence 46777778888775 33 7888887754
No 26
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.99 E-value=0.00022 Score=65.38 Aligned_cols=91 Identities=23% Similarity=0.209 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhccC-CCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCC
Q 012148 244 EFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACV-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKD 322 (470)
Q Consensus 244 ~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~-~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~ 322 (470)
...+...|+.+.. . ...++|.||..|..+|+... .....||++|+.+.-+..
T Consensus 68 ~~~i~~~L~~l~~------~---g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~------------------ 120 (192)
T 2x5n_A 68 YGKFLSAMHDLPV------R---GNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVED------------------ 120 (192)
T ss_dssp HHHHHHHHTTCCC------C---SCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSC------------------
T ss_pred HHHHHHHHHcCCC------C---CCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCC------------------
Confidence 4466777776432 1 24679999999999988421 123568888887531100
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChhhchhhhccc
Q 012148 323 LDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKT 374 (470)
Q Consensus 323 ~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~~l~~l~~~T 374 (470)
..-..++++++.+.||.|++..++.+.-+-. |..+++.+
T Consensus 121 ------------~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 121 ------------EKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp ------------HHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred ------------chhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 1124678999999999999998877655556 88888774
No 27
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.98 E-value=2.6e-05 Score=70.95 Aligned_cols=162 Identities=13% Similarity=0.164 Sum_probs=101.7
Q ss_pred CCCEEEEEEEcccchhh--HHHHHHHHHHHhhcC-CCCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHHHH
Q 012148 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~--~~~l~~~l~~~l~~l-p~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
.+.-++||||.|.+... ...+++.++..++.+ +++.+||+|+|++..+.. .+. ..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~---------------------~~ 62 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFK---------------------EF 62 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHH---------------------HH
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecC---------------------Cc
Confidence 35678999999998644 456788888888877 467999999999886532 111 00
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHH-HH
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-LL 282 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~-ll 282 (470)
. .+..+...++.|+.. .....+|.||..|.. ++
T Consensus 63 ~--------------------------------------~~~~~~~~i~~l~~~--------~g~T~~~~aL~~a~~~l~ 96 (194)
T 1mf7_A 63 Q--------------------------------------NNPNPRSLVKPITQL--------LGRTHTATGIRKVVRELF 96 (194)
T ss_dssp H--------------------------------------HSCCHHHHHTTCCCC--------CSCBCHHHHHHHHHHTTT
T ss_pred C--------------------------------------CHHHHHHHHHhCcCC--------CCCchHHHHHHHHHHHhc
Confidence 0 001234455555321 234679999999986 43
Q ss_pred hcc---CCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccC
Q 012148 283 GAC---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (470)
Q Consensus 283 ~~~---~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~ 359 (470)
... .++....|++++.|.++..+- . +.+.++++.+.||.|..+....
T Consensus 97 ~~~~~~r~~~~~~iillTDG~~~~d~~----------------------~--------~~~~~~~~~~~gi~v~~igvG~ 146 (194)
T 1mf7_A 97 NITNGARKNAFKILVVITDGEKFGDPL----------------------G--------YEDVIPEADREGVIRYVIGVGD 146 (194)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCBSCSS----------------------C--------GGGTHHHHHHTTEEEEEEEESG
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCch----------------------h--------hHHHHHHHHHCCCEEEEEEecc
Confidence 310 111224588888888761100 0 0123456677898777766644
Q ss_pred Cc---cChhhchhhhccc-CceEEEcCCCCc
Q 012148 360 DQ---VGVAELKVAVEKT-GGLVVLSDSFGH 386 (470)
Q Consensus 360 ~~---~~l~~l~~l~~~T-GG~v~~y~~f~~ 386 (470)
+. .+..+|..++..+ +|.+|..++++.
T Consensus 147 ~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 177 (194)
T 1mf7_A 147 AFRSEKSRQELNTIASKPPRDHVFQVNNFEA 177 (194)
T ss_dssp GGCSHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred cccccccHHHHHHHhCCCCcccEEEeCCHHH
Confidence 32 1378899999986 588888888765
No 28
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.81 E-value=0.00029 Score=63.38 Aligned_cols=153 Identities=10% Similarity=0.144 Sum_probs=96.0
Q ss_pred CCEEEEEEEcccchhh--HHHHHHHHHHHhhcC-CCCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHHHHH
Q 012148 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (470)
Q Consensus 129 ~p~~vFvID~S~~~~~--~~~l~~~l~~~l~~l-p~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~~i~ 204 (470)
+.-++|+||.|.+... ...+++.++..++.+ +++.+||+|+|++.++.. .+. ...
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~---------------------~~~ 60 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFS---------------------DYV 60 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHH---------------------HHH
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCc---------------------ccC
Confidence 4568999999987543 556788888888888 456899999999887643 111 000
Q ss_pred HHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHH-HHh
Q 012148 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-LLG 283 (470)
Q Consensus 205 ~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~-ll~ 283 (470)
.+..+..+++.|... ...+.+|.||..|.. ++.
T Consensus 61 --------------------------------------~~~~~~~~~~~i~~~--------~g~T~~~~aL~~a~~~~~~ 94 (179)
T 1mjn_A 61 --------------------------------------KRKDPDALLKHVKHM--------LLLTNTFGAINYVATEVFR 94 (179)
T ss_dssp --------------------------------------HHCCHHHHHTTCCCC--------CBCCCHHHHHHHHHHHTSS
T ss_pred --------------------------------------CHHHHHHHHHhcccC--------CCCChHHHHHHHHHHHhcc
Confidence 011245566666542 124679999999985 543
Q ss_pred cc---CCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCC
Q 012148 284 AC---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (470)
Q Consensus 284 ~~---~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~ 360 (470)
.. .+..--.|++++.|.++.|. . . + .+.||.|-.+....
T Consensus 95 ~~~g~r~~~~~~iillTDG~~~~~~-~----------------------~--~------------~~~~i~i~~igvG~- 136 (179)
T 1mjn_A 95 EELGARPDATKVLIIITDGEATDSG-N----------------------I--D------------AAKDIIRYIIGIGK- 136 (179)
T ss_dssp GGGTCCTTSEEEEEEEESSCCSSCS-C----------------------C--G------------GGTTSEEEEEEESG-
T ss_pred cccCCCCCCCeEEEEEcCCCCCCCc-c----------------------h--H------------HHCCCEEEEEEccc-
Confidence 20 01112357888888876542 0 0 0 13566555554433
Q ss_pred ccC----hhhchhhhcccCc-eEEEcCCCCc
Q 012148 361 QVG----VAELKVAVEKTGG-LVVLSDSFGH 386 (470)
Q Consensus 361 ~~~----l~~l~~l~~~TGG-~v~~y~~f~~ 386 (470)
..+ ..+|..++..+|| .+|+.++|+.
T Consensus 137 ~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 137 HFQTKESQETLHKFASKPASEFVKILDTFEK 167 (179)
T ss_dssp GGCSHHHHHTTGGGSCSCHHHHEEEESSGGG
T ss_pred cccccccHHHHHHHhCCccHhcEEEeCCHHH
Confidence 233 4789999999987 5788888764
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.73 E-value=0.0002 Score=78.65 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=106.0
Q ss_pred CCEEEEEEEcccchhh--HHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHHH
Q 012148 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQ 202 (470)
Q Consensus 129 ~p~~vFvID~S~~~~~--~~~l~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~~ 202 (470)
+.-++||||.|.+... +..++++++..++.+. .+.|||||+|++..... .+. ..
T Consensus 243 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~~------------------- 302 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS-EA------------------- 302 (741)
T ss_dssp EEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-SG-------------------
T ss_pred ceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeec-cc-------------------
Confidence 4569999999998643 5667888888877664 56899999999875433 111 00
Q ss_pred HHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHH
Q 012148 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (470)
Q Consensus 203 i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll 282 (470)
. ...++.+.+.|++|... .........+|.||..|...|
T Consensus 303 ------------------------------------~-~~~~~~~~~~i~~l~~~----~~~~~ggT~~~~aL~~a~~~l 341 (741)
T 3hrz_D 303 ------------------------------------D-SSNADWVTKQLNEINYE----DHKLKSGTNTKKALQAVYSMM 341 (741)
T ss_dssp ------------------------------------G-GGCHHHHHHHHTTCCGG----GGSSSCCCCHHHHHHHHHHHH
T ss_pred ------------------------------------C-CcCHHHHHHHHHhcccc----cccCCCChHHHHHHHHHHHHH
Confidence 0 01233566666666421 000123567999999999988
Q ss_pred hccC-CCCC------cEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEe
Q 012148 283 GACV-PGSG------ARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLF 355 (470)
Q Consensus 283 ~~~~-~~~G------G~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF 355 (470)
.... ...+ -.|++++.|.++.|..-.... +.++. .......++.+.+.||.|..+
T Consensus 342 ~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~---~~i~~---------------~~~~~~~a~~~~~~gi~i~~i 403 (741)
T 3hrz_D 342 SWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVI---DEIRD---------------LLYIGKDRKNPREDYLDVYVF 403 (741)
T ss_dssp CCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHH---HHHHH---------------HTTCSSCTTCCCGGGEEEEEE
T ss_pred hhhhhccccchhccCeEEEEECCCccccCCCchHHH---HHHHH---------------HhhcccccccccccCeeEEEE
Confidence 3110 0112 258899999988774111000 00000 000111233445667766666
Q ss_pred eccCCccChhhchhhhcccCce--EEEcCCCCc
Q 012148 356 ACALDQVGVAELKVAVEKTGGL--VVLSDSFGH 386 (470)
Q Consensus 356 ~~s~~~~~l~~l~~l~~~TGG~--v~~y~~f~~ 386 (470)
.+.. .++-.+|..|+..+||. +|..++++.
T Consensus 404 gvG~-~~~~~~L~~ia~~~~g~~~~~~~~~~~~ 435 (741)
T 3hrz_D 404 GVGP-LVNQVNINALASKKDNEQHVFKVKDMEN 435 (741)
T ss_dssp ECSS-SCCHHHHHHHSCCCTTCCCEECBSSHHH
T ss_pred eCCC-cCCHHHHHHHhcCCCCcceEEEeCCHHH
Confidence 5533 47888999999999996 777777543
No 30
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.65 E-value=0.0017 Score=59.18 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=40.5
Q ss_pred CCCEEEEEEEcccchh--hHHHHHHHHHHHhhcC---CCCceEEEEEECCeEEE
Q 012148 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL---PDNSLVGLITFGTLVQV 176 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~--~~~~l~~~l~~~l~~l---p~~~~VglITfd~~V~~ 176 (470)
.+--++|+||.|.+.. ....+++.++..++.+ +++.|||+|+|++.++.
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~ 73 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTV 73 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEE
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccE
Confidence 4667999999999765 3566888999988888 57899999999988664
No 31
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.63 E-value=0.0022 Score=57.34 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=87.1
Q ss_pred CCCEEEEEEEcccchh--hHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHH
Q 012148 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~--~~~~l~~~l~~~l~~lp---~~~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~ 201 (470)
.+.-++||||.|.+.. +...+++.++..++.++ +..+||+|+|++.++.. .+. .
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~-~------------------- 75 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQ-S------------------- 75 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-S-------------------
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCC-C-------------------
Confidence 4678999999998764 45667888888888875 45899999999886532 111 0
Q ss_pred HHHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHH
Q 012148 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (470)
Q Consensus 202 ~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~l 281 (470)
+- ...++.+.+.|+.++.. .....+|.||..|...
T Consensus 76 ----------------------------------~~---~~~~~~~~~~i~~l~~~--------~g~T~~~~aL~~a~~~ 110 (178)
T 2xgg_A 76 ----------------------------------PN---AVDKQLAAHAVLDMPYK--------KGSTNTSDGLKACKQI 110 (178)
T ss_dssp ----------------------------------GG---GSCHHHHHHHHHHCCCC--------CCCCCHHHHHHHHHHH
T ss_pred ----------------------------------CC---ccCHHHHHHHHHhCCCC--------CCCccHHHHHHHHHHH
Confidence 00 00233566667776521 1246799999999987
Q ss_pred Hhcc----CCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeec
Q 012148 282 LGAC----VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (470)
Q Consensus 282 l~~~----~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~ 357 (470)
+... .......|++++.|.++.|. -..+.++++.+.||.|..+..
T Consensus 111 l~~~~~g~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~l~~~gi~v~~igv 159 (178)
T 2xgg_A 111 LFTGSRPGREHVPKLVIGMTDGESDSDF-------------------------------RTVRAAKEIRELGGIVTVLAV 159 (178)
T ss_dssp HHHCCCTTCTTSCEEEEEEESSCCCHHH-------------------------------HHSHHHHHHHHTTCEEEEEEC
T ss_pred hcCcccCCCCCCCEEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEc
Confidence 5321 11233568888888654320 123567777788987766655
Q ss_pred cCCccChhhc
Q 012148 358 ALDQVGVAEL 367 (470)
Q Consensus 358 s~~~~~l~~l 367 (470)
.. .++-..|
T Consensus 160 G~-~~~~~~l 168 (178)
T 2xgg_A 160 GH-YVAAALV 168 (178)
T ss_dssp C---------
T ss_pred CC-cCCHHHH
Confidence 33 3454444
No 32
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.31 E-value=0.00062 Score=78.08 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=101.1
Q ss_pred CCEEEEEEEcccchhh--HHHHHHHHHHHhhcCCCC-ceEEEEEECCeEEEE-EcCCCCCCCCceeeecCCcccCHHHHH
Q 012148 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLPDN-SLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (470)
Q Consensus 129 ~p~~vFvID~S~~~~~--~~~l~~~l~~~l~~lp~~-~~VglITfd~~V~~y-~l~~~~~~~~~~~v~~g~~~~t~~~i~ 204 (470)
+.-++||||.|.+... ...+++.+++.++.+.++ .|||+|+|++.++.. .+. +..
T Consensus 130 ~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt---------------------~~~ 188 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE---------------------EFR 188 (1095)
T ss_dssp CEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSH---------------------HHH
T ss_pred CccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCc---------------------ccC
Confidence 4568999999987554 567899999999988754 899999999886543 111 000
Q ss_pred HHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhc
Q 012148 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA 284 (470)
Q Consensus 205 ~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~ 284 (470)
+ ++.+..+++.|... .....+|.||..|...+-.
T Consensus 189 ~--------------------------------------~~~l~~ai~~i~~~--------gG~T~~g~AL~~a~~~lf~ 222 (1095)
T 3k6s_A 189 R--------------------------------------SSNPLSLLASVHQL--------QGFTYTATAIQNVVHRLFH 222 (1095)
T ss_dssp S--------------------------------------CSCGGGGTTTCCCC--------CSCBCHHHHHHHHHTTTTS
T ss_pred C--------------------------------------HHHHHHHHhhhhcc--------cCCChHHHHHHHHHHhhcc
Confidence 0 00112233344321 1246799999999764321
Q ss_pred cCCCCCc------EEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeecc
Q 012148 285 CVPGSGA------RILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (470)
Q Consensus 285 ~~~~~GG------~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s 358 (470)
...|+ .|++++.|.++..+ .-+.+.++++.+.||.+-.+...
T Consensus 223 --~~~g~R~~~~kviIllTDG~~~~d~------------------------------~~~~~~a~~~r~~GI~i~aIGVG 270 (1095)
T 3k6s_A 223 --ASYGARRDAAKILIVITDGKKEGDS------------------------------LDYKDVIPMADAAGIIRYAIGVG 270 (1095)
T ss_dssp --TTTTCCSSSEEEEEEEESSCCBSCS------------------------------SCHHHHHHHHHHHCEEECCEEBS
T ss_pred --ccccCCCCCCeEEEEEeCCCcCCCc------------------------------hhHHHHHHHHHHCCCEEEEEecc
Confidence 02222 47777777543111 01245677777888876555554
Q ss_pred CCc---cChhhchhhhcccCc-eEEEcCCCCc
Q 012148 359 LDQ---VGVAELKVAVEKTGG-LVVLSDSFGH 386 (470)
Q Consensus 359 ~~~---~~l~~l~~l~~~TGG-~v~~y~~f~~ 386 (470)
..+ ++..+|..++..++| .+|..++|+.
T Consensus 271 ~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 271 LAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp SGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred cccccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 432 588999999999887 7777777764
No 33
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.22 E-value=0.003 Score=67.35 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=34.7
Q ss_pred CEEEEEEEcccchh--------hHHHHHHHHHHHhhc---CCCCceEEEEEECCe
Q 012148 130 PVFMFVVDTCIIEE--------EMSFLKSALSQAIDL---LPDNSLVGLITFGTL 173 (470)
Q Consensus 130 p~~vFvID~S~~~~--------~~~~l~~~l~~~l~~---lp~~~~VglITfd~~ 173 (470)
-..||+||+|.+.. .+..+++++...++. ..++.+||||+|++.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~ 62 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTD 62 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccC
Confidence 46899999998753 356677888888773 567889999999865
No 34
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.59 E-value=0.063 Score=50.51 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=37.8
Q ss_pred CCCEEEEEEEcccchh-hHHHHHHHHHHHhhcCC---CCceEEEEEECCe
Q 012148 128 VPPVFMFVVDTCIIEE-EMSFLKSALSQAIDLLP---DNSLVGLITFGTL 173 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~-~~~~l~~~l~~~l~~lp---~~~~VglITfd~~ 173 (470)
.+..+||+||+|.+.. ++..++++++..+..++ +..+||+|+|+..
T Consensus 133 ~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 133 VALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp SCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 3678999999999853 57788999999888765 5789999999954
No 35
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=95.38 E-value=0.064 Score=59.98 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=37.1
Q ss_pred CCCEEEEEEEcccchhh--------HHHHHHHHHHHhhcCC--CCceEEEEEECCeEE
Q 012148 128 VPPVFMFVVDTCIIEEE--------MSFLKSALSQAIDLLP--DNSLVGLITFGTLVQ 175 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~--------~~~l~~~l~~~l~~lp--~~~~VglITfd~~V~ 175 (470)
.+.-+|||||+|.+... +..++++++..++.|. ++.|||||+|++.+.
T Consensus 223 ~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~ 280 (893)
T 2ww8_A 223 VPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIF 280 (893)
T ss_dssp CCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBC
T ss_pred CCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 46679999999998643 3446788888887663 478999999998653
No 36
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=95.31 E-value=0.35 Score=51.76 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=46.0
Q ss_pred ccchhHHHHHHHHHHhccCCC-CCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHH
Q 012148 268 TRCTGTALSIAASLLGACVPG-SGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLV 346 (470)
Q Consensus 268 ~~~~G~AL~~A~~ll~~~~~~-~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~ 346 (470)
..++|.||.+|+.++...... ..=+|++||.|--+.|. + .....-....|+.+.
T Consensus 140 ~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~--------------------~-----~~~~~~~~~~a~~l~ 194 (609)
T 1jey_A 140 DYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN--------------------D-----SAKASRARTKAGDLR 194 (609)
T ss_dssp CCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTT--------------------C-----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCC--------------------c-----hHHHHHHHHHHHHHH
Confidence 467999999999999843222 24578888887432221 0 111223467899999
Q ss_pred hcCeEEEEeeccCC
Q 012148 347 HQGHVLDLFACALD 360 (470)
Q Consensus 347 ~~gisvdlF~~s~~ 360 (470)
+.||.|.+|.++.+
T Consensus 195 ~~gI~i~~igig~~ 208 (609)
T 1jey_A 195 DTGIFLDLMHLKKP 208 (609)
T ss_dssp HHTEEEEEEEBCCT
T ss_pred hcCcEEEEEecCCC
Confidence 99999999877544
No 37
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=95.15 E-value=0.39 Score=52.09 Aligned_cols=213 Identities=13% Similarity=0.177 Sum_probs=107.6
Q ss_pred CCCEEEEEEEcccchhh-HHHH---HHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHH
Q 012148 128 VPPVFMFVVDTCIIEEE-MSFL---KSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~-~~~l---~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
.|-=.+|++|+|.+..+ ++.| ...|.+.|..+.++.|+||..|-.... . |-....+ +++
T Consensus 110 ~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~----~------P~~~~~p-------~~~ 172 (690)
T 3fcs_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPV----S------PYMYISP-------PEA 172 (690)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSS----T------TTSCCCS-------TTT
T ss_pred CCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeecccc----C------CccccCh-------hhh
Confidence 45678999999998754 4433 455666666777899999999975532 0 1000000 000
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHH--HH
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--SL 281 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~--~l 281 (470)
.. .|-....+...-++ . -+..+++.+....+.+.+..+.-. .+...|...+-+.+++|+ .-
T Consensus 173 ---~~------~pc~~~~~~c~~~f---~-f~~~l~lt~~~~~f~~~v~~~~is----gn~D~PE~g~dAl~qa~~c~~~ 235 (690)
T 3fcs_B 173 ---LE------NPCYDMKTTCLPMF---G-YKHVLTLTDQVTRFNEEVKKQSVS----RNRDAPEGGFDAIMQATVCDEK 235 (690)
T ss_dssp ---TT------CTTSSSSSCCCCCC---S-EEEEEEEESCHHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHHH
T ss_pred ---cc------CCCcCCCCCCCCCc---c-ceeecccCCCHHHHHHHhhceecc----CCCCCCchHHHHHHHHhhcccc
Confidence 00 00000000010001 1 123467777666666666654321 233345555555556663 33
Q ss_pred HhccCCCCCcEEEEEecCCCC--CCCceeecCCCCCcccCCCCCCCCCCCccchhHH--H--HHHHHHHHHhcCeEEEEe
Q 012148 282 LGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK--F--YDALSKQLVHQGHVLDLF 355 (470)
Q Consensus 282 l~~~~~~~GG~Ii~F~~g~pt--~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~--f--Y~~la~~~~~~gisvdlF 355 (470)
+. .+...-|+|+|++-.+. -|.|++...-..+...-|.+ .+. .+..+.. | -.+|++++.+++|.+ +|
T Consensus 236 ig--Wr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~--~~~--~y~~s~~~DypSi~ql~~~l~~~~i~~-if 308 (690)
T 3fcs_B 236 IG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVG--SDN--HYSASTTMDYPSLGLMTEKLSQKNINL-IF 308 (690)
T ss_dssp HT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBC--TTC--BBGGGGTSCCCCHHHHHHHHHHTTCEE-EE
T ss_pred cC--CCCCceEEEEEECCCccccCCCccccceecCCCcceeec--CCC--ccccccccCCCCHHHHHHHHHHcCCeE-EE
Confidence 32 22346789998886665 47777655433333333322 111 1222221 1 467888888899944 66
Q ss_pred eccCCccChhhchhhh-cccCceEEEcCC
Q 012148 356 ACALDQVGVAELKVAV-EKTGGLVVLSDS 383 (470)
Q Consensus 356 ~~s~~~~~l~~l~~l~-~~TGG~v~~y~~ 383 (470)
+......++ -..|+ ..+|+.+-....
T Consensus 309 avt~~~~~~--y~~l~~~i~~s~v~~l~~ 335 (690)
T 3fcs_B 309 AVTENVVNL--YQNYSELIPGTTVGVLSM 335 (690)
T ss_dssp EEEGGGHHH--HHHHHHHSTTCEEEEECT
T ss_pred EEeCCchhh--HHHHHhhcCCceeeeecc
Confidence 655554443 22333 334555555543
No 38
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=93.94 E-value=5.3 Score=41.02 Aligned_cols=194 Identities=14% Similarity=0.164 Sum_probs=105.4
Q ss_pred CCCEEEEEEEcccchhh-HH---HHHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHH-
Q 012148 128 VPPVFMFVVDTCIIEEE-MS---FLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQ- 202 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~-~~---~l~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~- 202 (470)
.|-=.+|++|+|.+..+ +. .+...|...|..+..+.|+||..|-.... .|-... +.+.
T Consensus 110 ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v----------~P~~~~-------~p~~~ 172 (472)
T 3t3p_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPV----------SPYMYI-------SPPEA 172 (472)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSS----------TTTSCC-------CSHHH
T ss_pred CCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeecccc----------CccccC-------Chhhh
Confidence 46778999999998754 33 34566777777788899999999864421 111000 0111
Q ss_pred HHHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHH--H
Q 012148 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--S 280 (470)
Q Consensus 203 i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~--~ 280 (470)
++.-.. . ..+....++ .-+..+++.+....+.+.+..+.-. .+...|...+-+-+++|+ .
T Consensus 173 l~nPc~--~--------~~~~c~p~f----~fr~~l~LT~d~~~F~~~V~~~~iS----Gn~D~PEgg~dAl~qaavC~~ 234 (472)
T 3t3p_B 173 LENPCY--D--------MKTTCLPMF----GYKHVLTLTDQVTRFNEEVKKQSVS----RNRDAPEGGFDAIMQATVCDE 234 (472)
T ss_dssp HHCTTT--T--------TTSCCCCCC----SEEEEEEEESCHHHHHHHHHHCCCC----CCSSSSBCHHHHHHHHHHCHH
T ss_pred hcCCCc--c--------cccCCCCCc----ceeEeeccCCCHHHHHHHHhhcccc----CCCCCCchHHHHHHHHhcchh
Confidence 211100 0 000011001 1233567777777788888775432 233445556666666664 2
Q ss_pred HHhccCCCCCcEEEEEecCCCC--CCCceeecCCCCCcccCCCCCCCCCCCccchhHH----HHHHHHHHHHhcCeEEEE
Q 012148 281 LLGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK----FYDALSKQLVHQGHVLDL 354 (470)
Q Consensus 281 ll~~~~~~~GG~Ii~F~~g~pt--~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~----fY~~la~~~~~~gisvdl 354 (470)
-+. + ....-|+++|++-.+- .|.|++...-..+..+-|-+ .+. .+..+.. -..+|++++.+++|.+ +
T Consensus 235 ~ig-W-R~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~--~~~--~Y~~s~~~DYPSv~ql~~~l~e~nI~~-I 307 (472)
T 3t3p_B 235 KIG-W-RNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVG--SDN--HYSASTTMDYPSLGLMTEKLSQKNINL-I 307 (472)
T ss_dssp HHT-C-CSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBC--TTC--BBTTTTTSCCCCHHHHHHHHHHTTCEE-E
T ss_pred hcC-C-CCCceEEEEEECCCCcCcCCCccccceecCCCCceEEC--CCC--cccccccCCCCCHHHHHHHHHhcCccE-E
Confidence 232 2 2345799999886654 68888765433333333322 111 1111111 2457888888888754 7
Q ss_pred eeccCCccC
Q 012148 355 FACALDQVG 363 (470)
Q Consensus 355 F~~s~~~~~ 363 (470)
|+.......
T Consensus 308 FAVt~~~~~ 316 (472)
T 3t3p_B 308 FAVTENVVN 316 (472)
T ss_dssp EEECGGGHH
T ss_pred EEEeccchh
Confidence 776665443
No 39
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=93.92 E-value=0.2 Score=52.75 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=28.7
Q ss_pred CCCEEEEEEEcccchhh------HHHHHHHHHHHhhcCCCCceEEEEEECCe
Q 012148 128 VPPVFMFVVDTCIIEEE------MSFLKSALSQAIDLLPDNSLVGLITFGTL 173 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~------~~~l~~~l~~~l~~lp~~~~VglITfd~~ 173 (470)
.+..++|+||+|.+... +.....++...+..+.++.+||+|+|++.
T Consensus 367 ~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~ 418 (538)
T 1yvr_A 367 TGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDE 418 (538)
T ss_dssp CCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSS
T ss_pred CCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCC
Confidence 56789999999998642 11222222222333345678999999964
No 40
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=93.25 E-value=6.7 Score=40.05 Aligned_cols=192 Identities=13% Similarity=0.158 Sum_probs=105.9
Q ss_pred CCCEEEEEEEcccchhh-HHH---HHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHH
Q 012148 128 VPPVFMFVVDTCIIEEE-MSF---LKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~-~~~---l~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
.|-=.+|++|+|.+..+ +.. +...|...|..+..+.|+||..|-...- .|-....+ +++
T Consensus 121 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v----------~P~~~t~p-------~~~ 183 (454)
T 3vi3_B 121 YPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTV----------MPYISTTP-------AKL 183 (454)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSS----------TTTSCCST-------TTT
T ss_pred CceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEecccc----------CCcccCCh-------HHh
Confidence 45678999999998754 333 4566777777888899999999864311 11100000 000
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHH--H
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS--L 281 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~--l 281 (470)
.. |- ...+.+..++ .-+..+++.+....+.+.+..+.-. ++...|...+-+-+++|.. -
T Consensus 184 ~n----------PC-~~~~~c~~~f----~fr~~l~LT~d~~~F~~~V~~~~is----Gn~D~PEgg~DAl~Qaavc~~~ 244 (454)
T 3vi3_B 184 RN----------PC-TSEQNCTTPF----SYKNVLSLTNKGEVFNELVGKQRIS----GNLDSPEGGFDAIMQVAVCGSL 244 (454)
T ss_dssp TC----------CS-CSSSCCCCCC----SEEEEEEEESCHHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHHH
T ss_pred cC----------CC-cCccCCCCCc----ceeeeeecCCCHHHHHHHHhhcccc----CCCcCCchhHHHHHHHhccccc
Confidence 00 00 0000011001 1233677777776777777764431 2334455556566666652 2
Q ss_pred HhccCCCCCcEEEEEecCCCC--CCCceeecCCCCCcccCCCCCCCCCCCccchhH--H--HHHHHHHHHHhcCeEEEEe
Q 012148 282 LGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAV--K--FYDALSKQLVHQGHVLDLF 355 (470)
Q Consensus 282 l~~~~~~~GG~Ii~F~~g~pt--~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~--~--fY~~la~~~~~~gisvdlF 355 (470)
+. +. + .-|+++|++-.+- .|.|+|..--..+..+-|-+ ++ .+..+. + -..+|++++.+++|-+ ||
T Consensus 245 ig-WR-~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~---~~--~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IF 315 (454)
T 3vi3_B 245 IG-WR-N-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE---NN--MYTMSHYYDYPSIAHLVQKLSENNIQT-IF 315 (454)
T ss_dssp HT-CC-S-SEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEE---TT--EECCTTTSCCCCHHHHHHHHHHTTEEE-EE
T ss_pred cC-Cc-c-ceEEEEEECCCCcCcCCCccccceecCCCCccEeC---CC--cccccccCCCCCHHHHHHHHHhcCCcE-EE
Confidence 22 22 4 7899999886554 68888866544444444432 11 111111 1 2568889999998854 77
Q ss_pred eccCCccCh
Q 012148 356 ACALDQVGV 364 (470)
Q Consensus 356 ~~s~~~~~l 364 (470)
+.......+
T Consensus 316 AVt~~~~~~ 324 (454)
T 3vi3_B 316 AVTEEFQPV 324 (454)
T ss_dssp EEEGGGHHH
T ss_pred EEcCccchH
Confidence 776665443
No 41
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=93.14 E-value=1.8 Score=39.72 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=31.8
Q ss_pred CCEEEEEEEcccchhh-HHHHHH---HHHHHhhcCCCCceEEEEEECCe
Q 012148 129 PPVFMFVVDTCIIEEE-MSFLKS---ALSQAIDLLPDNSLVGLITFGTL 173 (470)
Q Consensus 129 ~p~~vFvID~S~~~~~-~~~l~~---~l~~~l~~lp~~~~VglITfd~~ 173 (470)
|-=.+|++|+|.+... +..+++ .|.+.|+.+.++.|+||.+|-..
T Consensus 3 pvDl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp CEEEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred ceEEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 3457999999998754 444444 44445555677899999999655
No 42
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=92.24 E-value=12 Score=38.69 Aligned_cols=210 Identities=11% Similarity=0.103 Sum_probs=110.9
Q ss_pred CCCEEEEEEEcccchhh-HHHH---HHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHH
Q 012148 128 VPPVFMFVVDTCIIEEE-MSFL---KSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~-~~~l---~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
.|-=.+|++|+|.+..+ +..+ ...|...|..+..+.|+||..|-.... .|-. ..+.+++
T Consensus 131 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v----------~P~~-------~~~p~~l 193 (503)
T 3v4v_B 131 YPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTV----------LPFV-------STVPSKL 193 (503)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSS----------TTTS-------CCCHHHH
T ss_pred CceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeeccccc----------CCcc-------cCCHHHh
Confidence 46778999999998754 4434 456666777788899999999854421 1110 0112222
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHH--HH
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--SL 281 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~--~l 281 (470)
..-.. . ....+..++ .-+-.+++.+....+.+.+....- ..+...|...+-+-+++|+ .-
T Consensus 194 ~~PC~--~--------~~~~c~p~f----~fr~~l~LT~d~~~F~~~V~~~~i----SGnlD~PEggfDAlmQaavC~~~ 255 (503)
T 3v4v_B 194 RHPCP--T--------RLERCQSPF----SFHHVLSLTGDAQAFEREVGRQSV----SGNLDSPEGGFDAILQAALCQEQ 255 (503)
T ss_dssp HCCSS--C--------SSSCCCCCC----SEEEEEEEESCSHHHHHHHTTCCC----CCCSSSSBCHHHHHHHHHHCHHH
T ss_pred cCCCc--C--------CCCCCCCCc----ceEEEEEecCCHHHHHHHHhhcCc----cCCCCCCchHHHHHHHHhhcccc
Confidence 11000 0 000011001 112346777766667777765432 1233345556666666664 23
Q ss_pred HhccCCCCCcEEEEEecCCCC--CCCceeecCCCCCcccCCCCCCCCCCCccchhHH----HHHHHHHHHHhcCeEEEEe
Q 012148 282 LGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK----FYDALSKQLVHQGHVLDLF 355 (470)
Q Consensus 282 l~~~~~~~GG~Ii~F~~g~pt--~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~----fY~~la~~~~~~gisvdlF 355 (470)
+. +. + ..|+++|++-.+- -|.|++..--..+..+-|-+ .+. .+..+.. -..+|++++.+++|.+ +|
T Consensus 256 Ig-WR-~-a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~--~~~--~Yt~s~~~DYPSv~ql~~kL~ennI~~-IF 327 (503)
T 3v4v_B 256 IG-WR-N-VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLD--SNG--LYSRSTEFDYPSVGQVAQALSAANIQP-IF 327 (503)
T ss_dssp HT-CC-S-SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBC--TTS--BBGGGGGSCCCCHHHHHHHHHHHTEEE-EE
T ss_pred cC-CC-c-ceEEEEEECCCCcCcCCCccccceecCCCCCeEEC--CCC--ccccccccCCCCHHHHHHHHHhcCCeE-EE
Confidence 32 33 3 5799999886554 68887765433333444432 111 1222211 1457888888888844 67
Q ss_pred eccCCccChhhchhhhcc-cCceEEEcC
Q 012148 356 ACALDQVGVAELKVAVEK-TGGLVVLSD 382 (470)
Q Consensus 356 ~~s~~~~~l~~l~~l~~~-TGG~v~~y~ 382 (470)
+.......+ ...|+.. .|+.+-...
T Consensus 328 AVt~~~~~~--Y~~L~~~ip~s~vg~Ls 353 (503)
T 3v4v_B 328 AVTSAALPV--YQELSKLIPKSAVGELS 353 (503)
T ss_dssp EECSSSHHH--HHHHHTTSTTCEEEECC
T ss_pred EEcccchhH--HHHHHHhCCCceeeEcc
Confidence 776665433 3334433 344444443
No 43
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=89.39 E-value=5.9 Score=42.82 Aligned_cols=210 Identities=14% Similarity=0.149 Sum_probs=105.7
Q ss_pred CCCEEEEEEEcccchhh-HHH---HHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHH
Q 012148 128 VPPVFMFVVDTCIIEEE-MSF---LKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~-~~~---l~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i 203 (470)
.|-=.+|++|+|.+..+ ++. +...|.+.|..+.++.|+||.+|-.... ..+. .. .| +++
T Consensus 103 ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~-~P~~-~~--~p-------------~~~ 165 (687)
T 3k6s_B 103 YPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTV-LPFV-NT--HP-------------DKL 165 (687)
T ss_dssp CCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSS-TTSS-CC--SS-------------TTT
T ss_pred CceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeecccc-CCcc-cc--Cc-------------hhc
Confidence 46778999999998754 333 3456666777788899999999975421 0000 00 00 011
Q ss_pred HHHhhcccCCCCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHH--HH
Q 012148 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--SL 281 (470)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~--~l 281 (470)
+. |-........ +...-+..+++.+....+.+.+..+.-. .+...|...+-+.+++|+ .-
T Consensus 166 ~~----------Pc~~~~~~c~----~~f~f~~~l~lt~~~~~F~~~v~~~~is----gn~D~PE~g~dAl~qa~vc~~~ 227 (687)
T 3k6s_B 166 RN----------PCPNKEKECQ----PPFAFRHVLKLTNNSNQFQTEVGKQLIS----GNLDAPEGGLDAMMQVAACPEE 227 (687)
T ss_dssp TC----------CCCSCCCCCC----CCCSCEEEEEEESCSHHHHHHHHTSCCC----CCSSSSCCHHHHHHHHTTCHHH
T ss_pred cC----------CCCCCCCCcC----CcccceeecccCCCHHHHHHHHhhcccc----CCCCCCchHHHHHHHHhhcccc
Confidence 00 0000000000 0011123466777666777777765431 233345555555555552 33
Q ss_pred HhccCCCCCcEEEEEecCCCC--CCCceeecCCCCCcccCCCCCCCCCCCccchhHH--H--HHHHHHHHHhcCeEEEEe
Q 012148 282 LGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK--F--YDALSKQLVHQGHVLDLF 355 (470)
Q Consensus 282 l~~~~~~~GG~Ii~F~~g~pt--~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~--f--Y~~la~~~~~~gisvdlF 355 (470)
+. +. . .-|+|+|++-.+. -|.|+|...-..+..+-|.+ . + .+..+.. | -.+|++++.+++|.+ +|
T Consensus 228 ig-Wr-~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~--~-~--~y~~s~~~DyPS~~ql~~~l~~~~I~~-if 298 (687)
T 3k6s_B 228 IG-WR-N-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLE--D-N--LYKRSNEFDYPSVGQLAHKLAENNIQP-IF 298 (687)
T ss_dssp HC-CC-S-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCS--S-S--BCSSGGGSCCCCGGGHHHHHHHTTCBC-CE
T ss_pred cC-Cc-c-ceEEEEEECCCccccCCCccccceecCCCCccccC--C-C--ccccccccCCCCHHHHHHHHHHcCCeE-EE
Confidence 32 33 4 7899999886664 57777654433333333321 1 1 1111111 1 246777778888843 55
Q ss_pred eccCCccChhhchhhhc-ccCceEEEcCC
Q 012148 356 ACALDQVGVAELKVAVE-KTGGLVVLSDS 383 (470)
Q Consensus 356 ~~s~~~~~l~~l~~l~~-~TGG~v~~y~~ 383 (470)
+.....+++ -..|+. .+|+.+-....
T Consensus 299 avt~~~~~~--y~~l~~~i~~s~v~~L~~ 325 (687)
T 3k6s_B 299 AVTSRMVKT--YEKLTEIIPKSAVGELSE 325 (687)
T ss_dssp EECGGGHHH--HHHHHHHSSSCCEEECCT
T ss_pred EEeccchhh--HHHHHhhcCCceeeeecc
Confidence 554444333 223332 34555555543
No 44
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=80.87 E-value=0.37 Score=36.37 Aligned_cols=19 Identities=26% Similarity=0.957 Sum_probs=16.6
Q ss_pred ceEEeCCCCCCCCCCcccc
Q 012148 79 KIWICPFCFQRNHFPPHYA 97 (470)
Q Consensus 79 ~~w~C~~C~~~N~vp~~y~ 97 (470)
-.|+|++|...|.++.+|.
T Consensus 16 ~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 16 STWVCPICMVSNETQGEFT 34 (76)
T ss_dssp EEEECTTTCCEEEESSCCC
T ss_pred cceECccccccCcCccccC
Confidence 4799999999999997763
No 45
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=80.26 E-value=0.39 Score=34.39 Aligned_cols=28 Identities=18% Similarity=0.606 Sum_probs=20.7
Q ss_pred CCccccCCCeeeCCCceEEcCCceEEeCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 88 (470)
..--|.+|++++.- ....-.|.|++|-+
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhh
Confidence 45668999998765 23446899999964
No 46
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=77.40 E-value=7.2 Score=40.83 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=28.2
Q ss_pred CCCEEEEEEEcccchhh--------HHHHHHHHHHHhhcCCCCceEEEEEECCeEE
Q 012148 128 VPPVFMFVVDTCIIEEE--------MSFLKSALSQAIDLLPDNSLVGLITFGTLVQ 175 (470)
Q Consensus 128 ~~p~~vFvID~S~~~~~--------~~~l~~~l~~~l~~lp~~~~VglITfd~~V~ 175 (470)
..-.++++||+|.+... ...+..+..-++-.+..+.+||+|+|++.+.
T Consensus 361 ~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~ 416 (535)
T 2nvo_A 361 ANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFR 416 (535)
T ss_dssp CCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEE
T ss_pred CCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcce
Confidence 46788999999997643 1112111111222233456999999997543
No 47
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=76.38 E-value=0.79 Score=37.06 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=26.3
Q ss_pred CCccccCCCeeeCCCceEEcCCceEEeCCCCCCCCCCccc
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHY 96 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N~vp~~y 96 (470)
-|.+|.+|+--. .+.-++.-+|+.|+..|..++.|
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCCCE
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCCccCCcce
Confidence 479999999753 23334568999999999877665
No 48
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=72.05 E-value=5 Score=27.52 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=22.6
Q ss_pred CccccCCCeeeCCCceEEcCCceEEeCCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~ 89 (470)
...|..|++ .-..++...+.++|..||..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 467999998 23456777778999999973
No 49
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=70.38 E-value=1.4 Score=33.04 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCccccCCCeeeCCCceEEcCCceEEeCCCCCCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFP 93 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N~vp 93 (470)
-++||. |+++ .-.+.+.+.-+|+ ||..-.+.
T Consensus 3 ~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 3 IIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEET-TSCC----EEEETTCSEEEET-TTEEEECC
T ss_pred EEEECC-CCCE----EEEcCCCcEEECC-CCCeeeec
Confidence 368999 9997 3345556677899 99877654
No 50
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=66.87 E-value=3 Score=32.27 Aligned_cols=29 Identities=21% Similarity=0.581 Sum_probs=21.2
Q ss_pred ccccCCCeeeCCCceEEcCCceEEeCCCCCCCC
Q 012148 59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQRNH 91 (470)
Q Consensus 59 ~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N~ 91 (470)
-.|..|++- ..+......|.|..|++...
T Consensus 28 y~Cp~CG~~----~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 28 HACPNCGED----RVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp EECSSSCCE----EEEEEETTEEEETTTCCEEE
T ss_pred CcCCCCCCc----ceeccCCCeEECCCCCCEec
Confidence 569999983 23444456999999998654
No 51
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=66.53 E-value=2.1 Score=31.65 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=27.9
Q ss_pred CCccccCCCeeeCCCceEEcCCceEEeCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 88 (470)
.+..|.+|++--.|..+-.+.|. ..||.||.
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl 38 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 38 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTE-EECHHHHH
T ss_pred CCCCCCCCCCCCCCcCCcCCCCC-CccHHHHH
Confidence 46889999999999999999886 99999984
No 52
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=63.47 E-value=24 Score=32.90 Aligned_cols=44 Identities=14% Similarity=0.287 Sum_probs=35.6
Q ss_pred HHHHHHHhcCeEEEEeeccC-C---ccChhhchhhhcccCceEEEcCC
Q 012148 340 ALSKQLVHQGHVLDLFACAL-D---QVGVAELKVAVEKTGGLVVLSDS 383 (470)
Q Consensus 340 ~la~~~~~~gisvdlF~~s~-~---~~~l~~l~~l~~~TGG~v~~y~~ 383 (470)
..|+.+.+.||.|+.+.+.. + .-+..+|..++..|||.-|....
T Consensus 29 ~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 29 EAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP 76 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG
T ss_pred HHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH
Confidence 57788889999999988733 3 34568999999999999998744
No 53
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=62.58 E-value=1.8 Score=29.17 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=25.6
Q ss_pred CccccCCCeeeCCCceEEcCCceEEeCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 88 (470)
|..|.+|++--.|..+-.+.|. ..||.||-
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHH
Confidence 4679999999999999888876 89999984
No 54
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=59.84 E-value=5 Score=23.14 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=21.5
Q ss_pred cccCCCeeeCCCceEEcCCceEEeCCC
Q 012148 60 RCRTCRSILNPFSIVDFAAKIWICPFC 86 (470)
Q Consensus 60 RC~~C~aYiNp~~~~~~~g~~w~C~~C 86 (470)
.|-+|--|-|-||.- .-|+.|-|.=|
T Consensus 2 ~cvscv~fgngfcgd-ncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGD-NCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEEC-SSSCEEECSCC
T ss_pred cceEeEeecCccccC-CcCCcccccCC
Confidence 488999999999964 55789999876
No 55
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=52.64 E-value=3.1 Score=28.37 Aligned_cols=9 Identities=44% Similarity=1.232 Sum_probs=6.0
Q ss_pred eEEeCCCCC
Q 012148 80 IWICPFCFQ 88 (470)
Q Consensus 80 ~w~C~~C~~ 88 (470)
.|+|+.||.
T Consensus 30 dw~CP~Cg~ 38 (46)
T 6rxn_A 30 DWCCPVCGV 38 (46)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 477777775
No 56
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=51.28 E-value=2.7 Score=28.69 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=26.5
Q ss_pred CccccCCCeeeCCCceEEcCCceEEeCCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~ 89 (470)
...|.+|++--.|..+-.+.|. ..||.||..
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 34 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGH-YLCNACGLY 34 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCC-ccchHHHHH
Confidence 4679999999999999988885 899999853
No 57
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=51.06 E-value=3.6 Score=32.08 Aligned_cols=31 Identities=26% Similarity=0.528 Sum_probs=16.2
Q ss_pred CccccCCCeeeCCC-----------ceEEcCCceEEeCCCCC
Q 012148 58 PLRCRTCRSILNPF-----------SIVDFAAKIWICPFCFQ 88 (470)
Q Consensus 58 ~~RC~~C~aYiNp~-----------~~~~~~g~~w~C~~C~~ 88 (470)
.-+|..|+-...+- ..|++--..|+|+.|+.
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 46677776444432 22222223477777775
No 58
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.12 E-value=6.8 Score=29.67 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=21.7
Q ss_pred ccccCCCeeeCCCceEEcCCceEEeCCCCCC
Q 012148 59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (470)
Q Consensus 59 ~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~ 89 (470)
..|..|+--+.--|.+...+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 4466666666666666665578999999754
No 59
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=46.39 E-value=4.8 Score=28.17 Aligned_cols=9 Identities=44% Similarity=1.505 Sum_probs=5.2
Q ss_pred eEEeCCCCC
Q 012148 80 IWICPFCFQ 88 (470)
Q Consensus 80 ~w~C~~C~~ 88 (470)
.|+|+.|+.
T Consensus 35 dw~CP~Cg~ 43 (52)
T 1yk4_A 35 DWVCPLCGA 43 (52)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 466666654
No 60
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=46.25 E-value=6.3 Score=32.66 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=25.8
Q ss_pred ccccCCCeeeCCC----ceEEcCC---ceEEeCCCCCCCCCC
Q 012148 59 LRCRTCRSILNPF----SIVDFAA---KIWICPFCFQRNHFP 93 (470)
Q Consensus 59 ~RC~~C~aYiNp~----~~~~~~g---~~w~C~~C~~~N~vp 93 (470)
.-|++|++++=|- +++..++ -.++|..||+....|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 4699999998876 3333332 377899999988765
No 61
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.89 E-value=7.5 Score=27.09 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=20.2
Q ss_pred CCccccCCCeeeCCCceEEcCCceEEeCCCCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNH 91 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N~ 91 (470)
..-.|.+|+|- .+-+.|.|.=||+.|-
T Consensus 13 ~k~iCpkC~a~--------~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGAT--------NPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCE--------ECTTCSSCSSSSSCCC
T ss_pred CCccCCCCCCc--------CCCCceecCCCCCccc
Confidence 44669999986 2235899999998854
No 62
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.06 E-value=12 Score=25.80 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=18.4
Q ss_pred CccccCCCe--eeCCCceEEcCCceEEeCCCCCC
Q 012148 58 PLRCRTCRS--ILNPFSIVDFAAKIWICPFCFQR 89 (470)
Q Consensus 58 ~~RC~~C~a--YiNp~~~~~~~g~~w~C~~C~~~ 89 (470)
---|.+|++ ++- ....+|.|.=||..
T Consensus 19 ~k~CP~CG~~~fm~------~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMA------DHGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEE------ECSSEEECSSSCCE
T ss_pred cccCCCCCCceEEe------cCCCeEECCCCCCE
Confidence 456899998 433 22468999999853
No 63
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=41.43 E-value=7 Score=27.60 Aligned_cols=9 Identities=44% Similarity=1.457 Sum_probs=5.4
Q ss_pred eEEeCCCCC
Q 012148 80 IWICPFCFQ 88 (470)
Q Consensus 80 ~w~C~~C~~ 88 (470)
.|+|+.|+.
T Consensus 36 dw~CP~Cg~ 44 (54)
T 4rxn_A 36 DWVCPLCGV 44 (54)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 466666664
No 64
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=39.32 E-value=6.1 Score=34.25 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=18.3
Q ss_pred cccCCCeeeCCCceE-EcCCceEEeCCCCCCCC
Q 012148 60 RCRTCRSILNPFSIV-DFAAKIWICPFCFQRNH 91 (470)
Q Consensus 60 RC~~C~aYiNp~~~~-~~~g~~w~C~~C~~~N~ 91 (470)
.|..|+-++.--|.. ......|.|.+|...-.
T Consensus 87 ~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 87 QCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp ECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred cCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 344444444444442 22346899999986543
No 65
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=38.77 E-value=9.2 Score=34.64 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=17.0
Q ss_pred CccccCCCeeeCCCceEEcCCceEEeCCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~ 89 (470)
.-+|..|+-.... ..-|+|++|++.
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 4689999854332 234999999964
No 66
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=37.95 E-value=7.2 Score=27.61 Aligned_cols=8 Identities=50% Similarity=1.526 Sum_probs=3.9
Q ss_pred EEeCCCCC
Q 012148 81 WICPFCFQ 88 (470)
Q Consensus 81 w~C~~C~~ 88 (470)
|+|+.|+.
T Consensus 37 w~CP~Cga 44 (55)
T 2v3b_B 37 WVCPDCGV 44 (55)
T ss_dssp CCCTTTCC
T ss_pred CcCCCCCC
Confidence 55555543
No 67
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=37.91 E-value=8.4 Score=28.70 Aligned_cols=9 Identities=33% Similarity=1.095 Sum_probs=5.6
Q ss_pred eEEeCCCCC
Q 012148 80 IWICPFCFQ 88 (470)
Q Consensus 80 ~w~C~~C~~ 88 (470)
.|+|+.|+.
T Consensus 40 dw~CP~Cga 48 (70)
T 1dx8_A 40 SFMCPACRS 48 (70)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 466666665
No 68
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.90 E-value=40 Score=25.13 Aligned_cols=40 Identities=23% Similarity=0.411 Sum_probs=26.2
Q ss_pred CCCCCCCCCccccCCCeeeCCCceEEcCCceE-----EeCCCCCC
Q 012148 50 SMPILPYAPLRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQR 89 (470)
Q Consensus 50 ~ip~v~~~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~~ 89 (470)
..|.-.....+|..|+-.|.+--.+...++.| +|.-|+..
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 51 (80)
T 2dj7_A 7 GKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVI 51 (80)
T ss_dssp CCCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCB
T ss_pred CCCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCC
Confidence 33433335689999999886433344556777 88888753
No 69
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=37.53 E-value=7.4 Score=27.21 Aligned_cols=9 Identities=33% Similarity=1.017 Sum_probs=4.2
Q ss_pred eEEeCCCCC
Q 012148 80 IWICPFCFQ 88 (470)
Q Consensus 80 ~w~C~~C~~ 88 (470)
+|+|..||.
T Consensus 3 ~y~C~~CGy 11 (52)
T 1e8j_A 3 IYVCTVCGY 11 (52)
T ss_dssp CEECSSSCC
T ss_pred cEEeCCCCe
Confidence 344444443
No 70
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=36.58 E-value=7.5 Score=31.97 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=26.2
Q ss_pred CccccCCCeeeCCCceEEcCCceEEeCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 88 (470)
+..|.+|++--.|..+-++.| .+.||-|+.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl 34 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGL 34 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhh
Confidence 467999999999999998877 699999994
No 71
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=35.76 E-value=12 Score=30.63 Aligned_cols=28 Identities=29% Similarity=0.832 Sum_probs=19.0
Q ss_pred CccccCCCeeeCCCceEEcCCceE-EeCCCCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIW-ICPFCFQRNH 91 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w-~C~~C~~~N~ 91 (470)
-.||..|+..... ..... .|+-||..+.
T Consensus 73 ~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 73 ELECKDCSHVFKP------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECSSSSCEECS------CCSTTCCCSSSSSCCC
T ss_pred eEEcCCCCCEEeC------CCCCCCcCccccCCCc
Confidence 3788888876554 23356 7888887754
No 72
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=35.22 E-value=10 Score=31.51 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=25.8
Q ss_pred ccccCCCeeeCCC----ceEEcCC---ceEEeCCCCCCCCCC
Q 012148 59 LRCRTCRSILNPF----SIVDFAA---KIWICPFCFQRNHFP 93 (470)
Q Consensus 59 ~RC~~C~aYiNp~----~~~~~~g---~~w~C~~C~~~N~vp 93 (470)
.-|++|++++=|- +++..++ -.++|..||+....|
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 4699999998876 3343332 367899999988765
No 73
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=34.88 E-value=7.8 Score=29.75 Aligned_cols=8 Identities=50% Similarity=1.377 Sum_probs=4.1
Q ss_pred EEeCCCCC
Q 012148 81 WICPFCFQ 88 (470)
Q Consensus 81 w~C~~C~~ 88 (470)
|+|+.|+.
T Consensus 61 W~CPvCga 68 (81)
T 2kn9_A 61 WSCPDCGA 68 (81)
T ss_dssp CCCTTTCC
T ss_pred CcCCCCCC
Confidence 55555553
No 74
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=34.16 E-value=4.8 Score=29.41 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=26.2
Q ss_pred CccccCCCeeeCCCceEEcCCceEEeCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 88 (470)
...|.+|++--.|..+-.+.|. ..||.||-
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl 36 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGD-PVCNACGL 36 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSC-CCCHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCC-chhhHHHH
Confidence 4679999999999999988886 78999984
No 75
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.13 E-value=14 Score=31.20 Aligned_cols=33 Identities=18% Similarity=0.685 Sum_probs=19.7
Q ss_pred ccccCCCeeeCCCceEEc----CCceEEeCCCCCCCC
Q 012148 59 LRCRTCRSILNPFSIVDF----AAKIWICPFCFQRNH 91 (470)
Q Consensus 59 ~RC~~C~aYiNp~~~~~~----~g~~w~C~~C~~~N~ 91 (470)
..|..|+-.+..-|.... ....|.|.+|...-+
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 345555555555554432 235899999997543
No 76
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.99 E-value=11 Score=30.05 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=31.1
Q ss_pred ccccCCCeeeCCCceEE------cCCceEEeCCCCCCCCCCccccCC
Q 012148 59 LRCRTCRSILNPFSIVD------FAAKIWICPFCFQRNHFPPHYASI 99 (470)
Q Consensus 59 ~RC~~C~aYiNp~~~~~------~~g~~w~C~~C~~~N~vp~~y~~~ 99 (470)
-||.-|-+|+.|...+- .+...=+|-+||....+.+.||+.
T Consensus 30 GkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~ 76 (109)
T 2k0a_A 30 GKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCW 76 (109)
T ss_dssp TCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECH
T ss_pred CcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehH
Confidence 68999999999964432 244467899999777788888863
No 77
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=32.73 E-value=20 Score=25.79 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=20.6
Q ss_pred CCCccccCCCeeeCCCceEEcCCceEEeCCCCCCCCCC
Q 012148 56 YAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFP 93 (470)
Q Consensus 56 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N~vp 93 (470)
..+.+|.+|+.|== +-+|+.||..+..+
T Consensus 4 s~mr~C~~CgvYTL----------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 4 MRMKKCPKCGLYTL----------KEICPKCGEKTVIP 31 (60)
T ss_dssp CCCEECTTTCCEES----------SSBCSSSCSBCBCC
T ss_pred hhceeCCCCCCEec----------cccCcCCCCcCCCC
Confidence 34688999998832 35699999877653
No 78
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=32.70 E-value=17 Score=31.82 Aligned_cols=35 Identities=9% Similarity=-0.008 Sum_probs=27.4
Q ss_pred CccccCCC-----eeeCCCceEEcCC------ceEEeCCCCCCCCC
Q 012148 58 PLRCRTCR-----SILNPFSIVDFAA------KIWICPFCFQRNHF 92 (470)
Q Consensus 58 ~~RC~~C~-----aYiNp~~~~~~~g------~~w~C~~C~~~N~v 92 (470)
-++|.+|+ -|||++-+.+..| -.|+|-+|+..+.+
T Consensus 37 kvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 37 NIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp EEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred EEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 37899998 5799988776432 37999999998774
No 79
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=31.92 E-value=9.7 Score=40.00 Aligned_cols=20 Identities=25% Similarity=0.911 Sum_probs=0.0
Q ss_pred CceEEeCCCCCCCCCCcccc
Q 012148 78 AKIWICPFCFQRNHFPPHYA 97 (470)
Q Consensus 78 g~~w~C~~C~~~N~vp~~y~ 97 (470)
...|+|.+|+..|.+|..+.
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~ 134 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFT 134 (566)
T ss_dssp --------------------
T ss_pred ccceeccccccCCCCCCCCC
Confidence 35899999999999987663
No 80
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=31.69 E-value=10 Score=29.34 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=12.8
Q ss_pred ceEEeCCCCCCCCCC
Q 012148 79 KIWICPFCFQRNHFP 93 (470)
Q Consensus 79 ~~w~C~~C~~~N~vp 93 (470)
..|.|+||++.+.+.
T Consensus 22 t~F~CPfCnh~~sV~ 36 (85)
T 1wii_A 22 TQFTCPFCNHEKSCD 36 (85)
T ss_dssp SCCCCTTTCCSSCEE
T ss_pred CeEcCCCCCCCCeEE
Confidence 579999999998764
No 81
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.60 E-value=19 Score=28.08 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCccccCCCeeeCCCce-----EEcCCceEEeCCCCCCCCC
Q 012148 57 APLRCRTCRSILNPFSI-----VDFAAKIWICPFCFQRNHF 92 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~-----~~~~g~~w~C~~C~~~N~v 92 (470)
..+.|..|-.-.-.+|- -.+. ..|.|+.|.....+
T Consensus 36 ~LL~CD~C~~~fH~~Cl~PpL~~~P~-g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 36 DLVMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLCHVLPDL 75 (88)
T ss_dssp CCEECTTSSCEECTTSSSTTCCCCCS-SSCCCCSCCCCCSS
T ss_pred CEEECCCCCCceecccCCCCCCCCcC-CCcCCccccCCCcc
Confidence 57899999655444432 2333 47999999866543
No 82
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=30.41 E-value=14 Score=22.92 Aligned_cols=13 Identities=31% Similarity=0.892 Sum_probs=11.0
Q ss_pred ceEEeCCCCCCCC
Q 012148 79 KIWICPFCFQRNH 91 (470)
Q Consensus 79 ~~w~C~~C~~~N~ 91 (470)
+-|.|+.|+..|-
T Consensus 4 gDW~C~~C~~~Nf 16 (32)
T 2lk0_A 4 EDWLCNKCCLNNF 16 (32)
T ss_dssp SEEECTTTCCEEE
T ss_pred CCCCcCcCcCCcC
Confidence 3699999998885
No 83
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.55 E-value=52 Score=26.88 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=25.2
Q ss_pred CCccccCCCeeeCCCceEEcCCceE-----EeCCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQR 89 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~~ 89 (470)
...+|.+|+-.|-.-..+...++.| +|.-|+..
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 97 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQ 97 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCB
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCc
Confidence 3589999999988765566677788 68888754
No 84
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=29.50 E-value=15 Score=25.04 Aligned_cols=9 Identities=33% Similarity=0.980 Sum_probs=5.1
Q ss_pred EEeCCCCCC
Q 012148 81 WICPFCFQR 89 (470)
Q Consensus 81 w~C~~C~~~ 89 (470)
-+|+.||..
T Consensus 24 IrCpyCGyr 32 (48)
T 4ayb_P 24 VRCPYCGYK 32 (48)
T ss_dssp SCCTTTCCS
T ss_pred cccCccCcE
Confidence 556666643
No 85
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=28.74 E-value=9.8 Score=34.15 Aligned_cols=28 Identities=14% Similarity=0.469 Sum_probs=19.4
Q ss_pred CCccccCCCe-eeCCCceEEcCCceEEeCCCC
Q 012148 57 APLRCRTCRS-ILNPFSIVDFAAKIWICPFCF 87 (470)
Q Consensus 57 ~~~RC~~C~a-YiNp~~~~~~~g~~w~C~~C~ 87 (470)
...+|.+|++ |+...-. ..+.++|+||.
T Consensus 133 ~l~~C~~Cgg~fv~~~~~---~~~~f~Cp~C~ 161 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAHQ---PVGSFACSLCQ 161 (192)
T ss_dssp EEEECTTTCCEEEEESSC---CSSCCCCTTC-
T ss_pred eeCcCCCCCCCeeCccCC---CCCCCcCCCCC
Confidence 3689999987 4444332 34689999999
No 86
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.12 E-value=52 Score=24.14 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=23.5
Q ss_pred CCccccCCCeeeCCCceEEcCCceEEeCCCCCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N~v 92 (470)
++.+|..|++ |. .++...+.-+|..|+..-++
T Consensus 9 eiL~CP~ck~---~L-~~~~~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 9 EVLACPKDKG---PL-RYLESEQLLVNERLNLAYRI 40 (67)
T ss_dssp CCCBCTTTCC---BC-EEETTTTEEEETTTTEEEEE
T ss_pred HHhCCCCCCC---cC-eEeCCCCEEEcCCCCccccC
Confidence 5789999999 32 34455568999999976554
No 87
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=28.11 E-value=50 Score=24.43 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=23.7
Q ss_pred CCccccCCCeeeCCCceEEcCCceEEeCCCCCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N~v 92 (470)
++..|..|++=+ .++...+.-+|..|+..-++
T Consensus 7 ~iL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 7 DILVCPVCKGRL----EFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCBCTTTCCBE----EEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcC----EEeCCCCEEEcCCCCceecC
Confidence 468999999943 24455568999999976654
No 88
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.91 E-value=48 Score=24.73 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=22.9
Q ss_pred CCccccCCCeeeCCCceEEcCCceE-----EeCCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQR 89 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~~ 89 (470)
...+|.+|+--|-+--.+...++.| +|..|+..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~ 51 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEAT 51 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCB
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCC
Confidence 5689999999886543344456666 78888753
No 89
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=27.35 E-value=21 Score=21.68 Aligned_cols=15 Identities=27% Similarity=0.755 Sum_probs=12.3
Q ss_pred CceEEeCCCCCCCCC
Q 012148 78 AKIWICPFCFQRNHF 92 (470)
Q Consensus 78 g~~w~C~~C~~~N~v 92 (470)
+..|.|+.|...|.-
T Consensus 4 ~~~W~C~~CTf~N~~ 18 (31)
T 1nj3_A 4 SAMWACQHCTFMNQP 18 (31)
T ss_dssp SCCEECSSSCCEECS
T ss_pred CccccCCcccccCCC
Confidence 357999999999964
No 90
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.82 E-value=29 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=20.1
Q ss_pred ccccCCCeeeCCCceEEcCCceEEeCCCCCCCC
Q 012148 59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQRNH 91 (470)
Q Consensus 59 ~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N~ 91 (470)
-+|.+|++-+..- .+..-+|+-||+.--
T Consensus 22 Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 22 YLCADCGARNTIQ-----AKEVIRCRECGHRVM 49 (63)
T ss_dssp CBCSSSCCBCCCC-----SSSCCCCSSSCCCCC
T ss_pred EECCCCCCeeecC-----CCCceECCCCCcEEE
Confidence 6799998877633 245688999987654
No 91
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=25.82 E-value=36 Score=24.13 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=21.4
Q ss_pred CccccCCCeeeCCCceEEcCCceEEeCCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~ 89 (470)
..+|..|++- + ..++.....++|.-||..
T Consensus 11 ~~~Cp~C~~~--~-lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 11 RVTCPNHPDA--I-LVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CCSBTTBSSS--C-CEECSSSCCEECTTTCCE
T ss_pred cccCcCCCCC--c-eeEeCCCCeEEeCCCCCE
Confidence 3589999872 2 455666668999999964
No 92
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.97 E-value=65 Score=23.63 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=23.3
Q ss_pred CCccccCCCeeeCCCceEEcCCceEEeCCCCCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N~v 92 (470)
++.+|..|++=+ .++...+.-+|..|+..-++
T Consensus 7 ~iL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 7 DILVCPVTKGRL----EYHQDKQELWSRQAKLAYPI 38 (68)
T ss_dssp CCCBCSSSCCBC----EEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcC----eEeCCCCEEEcCCCCcEecC
Confidence 468999999833 24455568999999976654
No 93
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=24.35 E-value=18 Score=29.69 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=27.8
Q ss_pred CCccccCCCeeeCCCceEEcCCceEEeCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 88 (470)
....|.+|++-..|..+-.+.| ...||.||.
T Consensus 58 ~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl 88 (115)
T 4hc9_A 58 AGTSCANCQTTTTTLWRRNANG-DPVCNACGL 88 (115)
T ss_dssp TTCCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred ccccCCCcCCCCcceeEECCCC-CCcchHHHH
Confidence 4689999999999999998888 789999994
No 94
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=24.29 E-value=16 Score=30.17 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=25.8
Q ss_pred CccccCCCeeeCCCceEEcCCceEEeCCCCCCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFP 93 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N~vp 93 (470)
..-|..|+..|-|--.-......|.|.-|++...+.
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 357999999987654222345689999999876543
No 95
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=24.20 E-value=28 Score=21.65 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=12.4
Q ss_pred CceEEeCCCCCCCCC
Q 012148 78 AKIWICPFCFQRNHF 92 (470)
Q Consensus 78 g~~w~C~~C~~~N~v 92 (470)
+..|.|..|-..|.-
T Consensus 6 ~~~W~C~~CT~~N~~ 20 (34)
T 3a9j_C 6 GAQWNCTACTFLNHP 20 (34)
T ss_dssp CCCEECTTTCCEECT
T ss_pred CCcCCCCCCccccCC
Confidence 458999999999973
No 96
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=24.01 E-value=11 Score=28.17 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=23.6
Q ss_pred CccccCCCeeeCCCceEEcCCceEEeCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 88 (470)
+..|.+|++--.|..+-..+.....||.||-
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl 38 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEGIQCNACFI 38 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCCccchHHHH
Confidence 5789999999999888732222378999984
No 97
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=23.95 E-value=20 Score=22.40 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=10.6
Q ss_pred eEEeCCCCCCCC
Q 012148 80 IWICPFCFQRNH 91 (470)
Q Consensus 80 ~w~C~~C~~~N~ 91 (470)
-|+|+-|+..|-
T Consensus 6 DW~C~~C~~~Nf 17 (33)
T 2k1p_A 6 DWQCKTCSNVNW 17 (33)
T ss_dssp SCBCSSSCCBCC
T ss_pred CcccCCCCCccc
Confidence 599999999885
No 98
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.64 E-value=64 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.456 Sum_probs=22.7
Q ss_pred CccccCCCeeeCCCceEEcCCceE-----EeCCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQR 89 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~~ 89 (470)
..+|.+|+-.|-+--.+...++.| +|..|+..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~ 43 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKN 43 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCE
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCC
Confidence 478999999886444555667776 68888754
No 99
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=23.30 E-value=43 Score=23.51 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=19.2
Q ss_pred CccccCCCeeeCCCceEEcCCceEEeCCCCCC
Q 012148 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (470)
Q Consensus 58 ~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~ 89 (470)
-..|.+|++-+ ++. ....+|.|.-|+..
T Consensus 18 ~~fCPkCG~~~--~ma--~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGV--FLA--EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTC--CCE--ECSSEEECTTTCCC
T ss_pred cccCcCCCCce--eEe--ccCCEEECCCCCCE
Confidence 35699999844 322 22358999999865
No 100
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=22.20 E-value=27 Score=21.91 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=12.6
Q ss_pred ceEEeCCCCCCCCCC
Q 012148 79 KIWICPFCFQRNHFP 93 (470)
Q Consensus 79 ~~w~C~~C~~~N~vp 93 (470)
.+|.|..|-..|.-.
T Consensus 6 g~W~C~~C~~~N~~~ 20 (33)
T 3gj3_B 6 GTWDCDTCLVQNKPE 20 (33)
T ss_dssp CCEECTTTCCEECTT
T ss_pred CceeCCcccCCCccc
Confidence 479999999999743
No 101
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.14 E-value=71 Score=22.44 Aligned_cols=31 Identities=23% Similarity=0.691 Sum_probs=22.6
Q ss_pred ccccCCCeeeCCC-ceEEcCCceEE-------eCCCCCC
Q 012148 59 LRCRTCRSILNPF-SIVDFAAKIWI-------CPFCFQR 89 (470)
Q Consensus 59 ~RC~~C~aYiNp~-~~~~~~g~~w~-------C~~C~~~ 89 (470)
.+|.+|+-.|-+- ..+...++.|- |..|+..
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~ 41 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKC 41 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCB
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCc
Confidence 5899999999874 45556677886 7777643
No 102
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=21.50 E-value=28 Score=21.99 Aligned_cols=15 Identities=27% Similarity=0.744 Sum_probs=12.8
Q ss_pred ceEEeCCCCCCCCCC
Q 012148 79 KIWICPFCFQRNHFP 93 (470)
Q Consensus 79 ~~w~C~~C~~~N~vp 93 (470)
++|.|..|...|...
T Consensus 6 G~W~C~~C~v~N~~~ 20 (34)
T 3gj5_B 6 GSWDCEVCLVQNKAD 20 (34)
T ss_dssp CCEECTTTCCEECSS
T ss_pred CceECCeeEeECccc
Confidence 479999999999754
No 103
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.43 E-value=28 Score=24.15 Aligned_cols=35 Identities=23% Similarity=0.588 Sum_probs=22.9
Q ss_pred CCccccCCCeeeCC---CceEEcCCceEEeCCCCCCCC
Q 012148 57 APLRCRTCRSILNP---FSIVDFAAKIWICPFCFQRNH 91 (470)
Q Consensus 57 ~~~RC~~C~aYiNp---~~~~~~~g~~w~C~~C~~~N~ 91 (470)
.|-.|..|+.-..- +..+..+.+.|+|..|+....
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 36789999763211 114455667899999997654
No 104
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=21.19 E-value=35 Score=32.50 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhhcCCCCceEEEEEEC
Q 012148 144 EMSFLKSALSQAIDLLPDNSLVGLITFG 171 (470)
Q Consensus 144 ~~~~l~~~l~~~l~~lp~~~~VglITfd 171 (470)
|++.+.++|.++++.|.++.|+++|||-
T Consensus 208 EL~~L~~~L~~a~~~L~~gGrl~visfH 235 (285)
T 1wg8_A 208 ELNALKEFLEQAAEVLAPGGRLVVIAFH 235 (285)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 4777889999999999999999999884
No 105
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=20.94 E-value=25 Score=29.68 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=6.1
Q ss_pred EEeCCCCCCC
Q 012148 81 WICPFCFQRN 90 (470)
Q Consensus 81 w~C~~C~~~N 90 (470)
..|+-||+.+
T Consensus 108 ~~CP~Cgs~~ 117 (139)
T 3a43_A 108 LACPKCGSHD 117 (139)
T ss_dssp CSCSSSSCCC
T ss_pred CcCccccCCc
Confidence 5566666554
No 106
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.94 E-value=54 Score=23.82 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=17.5
Q ss_pred ccccCCCeeeCCCceEEcCCceE-----EeCCCCC
Q 012148 59 LRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQ 88 (470)
Q Consensus 59 ~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~ 88 (470)
++|.+|+--|-+--.+...++.| +|.-|+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~ 35 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGK 35 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCc
Confidence 46777777765433344455555 4666654
No 107
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.88 E-value=51 Score=27.48 Aligned_cols=29 Identities=21% Similarity=0.630 Sum_probs=20.9
Q ss_pred CCccccCCCeeeCCCceEEcCCceEEeCCCCCCC
Q 012148 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRN 90 (470)
Q Consensus 57 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~N 90 (470)
..|.|.+|.+ .|. .. +|..|+|+-|+++-
T Consensus 26 ~lP~CP~C~s---eyt-Ye-Dg~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNS---EYT-YE-DGALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCC---CCC-EE-CSSSEEETTTTEEE
T ss_pred cCCCCCCCCC---cce-Ee-cCCeEECCcccccc
Confidence 3688999986 333 32 35689999999864
No 108
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=20.26 E-value=26 Score=23.30 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=19.0
Q ss_pred ccccCCCeeeCCC------ceEEcCCceEEeCCCCCCCC
Q 012148 59 LRCRTCRSILNPF------SIVDFAAKIWICPFCFQRNH 91 (470)
Q Consensus 59 ~RC~~C~aYiNp~------~~~~~~g~~w~C~~C~~~N~ 91 (470)
-.|..|+.-..-- .+...+.+.|.|..|+....
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 4577776543322 22223446799999987654
No 109
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=20.08 E-value=37 Score=33.32 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhhcCCCCceEEEEEEC
Q 012148 144 EMSFLKSALSQAIDLLPDNSLVGLITFG 171 (470)
Q Consensus 144 ~~~~l~~~l~~~l~~lp~~~~VglITfd 171 (470)
|++.|.++|.++++.|.++.|+++|||-
T Consensus 249 EL~~L~~~L~~a~~~L~~gGRl~VISFH 276 (347)
T 3tka_A 249 ELEEIEQALKSSLNVLAPGGRLSIISFH 276 (347)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 3677888999999999999999999885
Done!