Query 012149
Match_columns 470
No_of_seqs 187 out of 682
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 23:34:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 6.3E-55 1.4E-59 461.6 34.6 321 141-467 149-490 (577)
2 PF04515 Choline_transpo: Plas 100.0 1.3E-49 2.9E-54 404.4 23.7 253 215-467 7-272 (334)
3 PF10110 GPDPase_memb: Membran 54.9 33 0.00072 30.5 6.0 33 412-444 104-136 (149)
4 PF03788 LrgA: LrgA family; I 50.3 41 0.00088 27.9 5.3 33 227-261 30-62 (96)
5 PF01102 Glycophorin_A: Glycop 49.2 20 0.00042 31.3 3.3 26 209-234 69-94 (122)
6 PF05568 ASFV_J13L: African sw 42.2 38 0.00083 30.2 4.1 38 210-247 35-72 (189)
7 cd03036 ArsC_like Arsenate Red 41.3 22 0.00048 30.1 2.5 30 419-448 2-31 (111)
8 PRK13344 spxA transcriptional 36.3 24 0.00052 31.0 2.0 31 418-448 2-32 (132)
9 PF12273 RCR: Chitin synthesis 32.4 30 0.00066 30.2 2.0 13 221-233 16-28 (130)
10 cd03027 GRX_DEP Glutaredoxin ( 32.3 38 0.00083 25.8 2.3 31 419-449 4-34 (73)
11 PRK01655 spxA transcriptional 32.0 29 0.00062 30.4 1.7 32 418-449 2-33 (131)
12 cd02977 ArsC_family Arsenate R 31.8 37 0.0008 28.1 2.3 30 419-448 2-31 (105)
13 PRK12559 transcriptional regul 30.2 34 0.00073 30.0 1.9 32 418-449 2-33 (131)
14 KOG3814 Signaling protein van 30.1 6.7E+02 0.015 26.3 15.1 35 156-191 171-209 (531)
15 cd03035 ArsC_Yffb Arsenate Red 28.0 50 0.0011 27.7 2.5 31 419-449 2-32 (105)
16 cd03418 GRX_GRXb_1_3_like Glut 27.8 55 0.0012 24.8 2.5 31 419-449 3-33 (75)
17 TIGR02189 GlrX-like_plant Glut 27.2 48 0.001 27.4 2.2 30 418-447 10-39 (99)
18 PRK12438 hypothetical protein; 27.1 4.1E+02 0.0088 31.4 10.1 9 352-360 205-213 (991)
19 TIGR01617 arsC_related transcr 27.0 53 0.0011 27.9 2.5 31 419-449 2-32 (117)
20 cd03032 ArsC_Spx Arsenate Redu 24.8 61 0.0013 27.4 2.5 32 418-449 2-33 (115)
21 PRK11200 grxA glutaredoxin 1; 24.2 66 0.0014 25.4 2.4 31 418-448 3-38 (85)
22 TIGR02181 GRX_bact Glutaredoxi 24.2 54 0.0012 25.3 1.9 30 419-448 2-31 (79)
23 TIGR02220 phg_TIGR02220 phage 24.1 52 0.0011 26.3 1.7 39 404-449 2-40 (77)
24 PRK10853 putative reductase; P 24.0 66 0.0014 27.6 2.6 32 418-449 2-33 (118)
25 cd03033 ArsC_15kD Arsenate Red 21.7 71 0.0015 27.2 2.3 31 419-449 3-33 (113)
26 TIGR02194 GlrX_NrdH Glutaredox 21.3 87 0.0019 23.8 2.5 30 420-449 3-32 (72)
27 PF05915 DUF872: Eukaryotic pr 20.9 2.3E+02 0.0051 24.3 5.3 15 206-220 77-91 (115)
28 PF11710 Git3: G protein-coupl 20.5 6.5E+02 0.014 23.6 8.8 20 214-233 180-199 (201)
29 PRK10638 glutaredoxin 3; Provi 20.5 80 0.0017 24.8 2.2 31 418-448 4-34 (83)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-55 Score=461.60 Aligned_cols=321 Identities=26% Similarity=0.427 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HH-HHHhccCC--C--CCChh----hHHHHHH
Q 012149 141 IWVLVITLILSVPICFLLLLLLKHYTKQLVYVALPFFVIVPTFINVY-WF-VACTVSSS--C--SDSLP----LVYRILV 210 (470)
Q Consensus 141 ~~~i~~~~~is~~ls~~~l~llr~~a~~lv~~~i~~~~~~~~~~~i~-~~-~~~~~~~~--~--~~~~~----~~~~~~~ 210 (470)
|.++...+.++.+++.+++.++|++++.++|..+++.+++++..... |+ +....... . ..... ....++.
T Consensus 149 w~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 228 (577)
T KOG1362|consen 149 WYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTLLD 228 (577)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHHHH
Confidence 88899999999999999999999999999999998888776655322 22 22222221 1 00000 1111222
Q ss_pred -HHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCeeeecC
Q 012149 211 -LVFVFLII-GVLVWIFVANWHRIELTVQIIGIASDALSKNLGLFVALPLLTLGLV-VYYAPIVVFLVFARLNGKIVPKE 287 (470)
Q Consensus 211 -~~i~~~i~-~i~i~~~~~~r~rI~~a~~il~~A~~~l~~~~~l~~v~p~~~~~~~-~~~v~~~~~~v~~~~~G~~~~~~ 287 (470)
.+|++.++ .+.+++++.+|+||+++++++|+|++++.+.|+++ +.|..+++.. +++++|+...+++++.| ++
T Consensus 229 ~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~-~~p~~~~~v~~~~i~~wv~~~~~l~t~~---~~- 303 (577)
T KOG1362|consen 229 AVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTL-FPPALTFFVLLLFISLWVFVALFLVTSG---PN- 303 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcc---cc-
Confidence 45555444 45777788999999999999999999999999987 4577776664 56788998889988887 22
Q ss_pred CCCCcceEECCCCchhHHHHHHHHH-HHHHHHHHhhhhhhhhheeeeEEeecCCC-CCCcchHHHHHHHcccccchhHHh
Q 012149 288 SNGEYKCVWKQDSWVPAYFALAILT-MLWSLTSMVEAKAYVISGTIAQWYFSKED-TKPKRSIRSSLRNAFGPSSGSICL 365 (470)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~lf~-~~W~~~fl~~~~~~tiAg~va~WYF~~~~-~~~~~pv~~s~~ra~~~hlGSi~~ 365 (470)
..++..|++..+++. ..++++++. ++|++||+.|++|+++||++++|||++++ +.|..|+..|++|+++||+||+|+
T Consensus 304 ~~gg~~~~~~~~~~~-~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yhlGSi~~ 382 (577)
T KOG1362|consen 304 SEGGCACTYSGGSLR-ILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYHLGSICF 382 (577)
T ss_pred cCCCceeeccCCcch-hHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHhccchhh
Confidence 122112667666633 334455555 99999999999999999999999999985 789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhccCc---c---hHHHHHHHHHHHHHHHHHHhhcHhhhHhHhccCcchhHHHHHHHHHHHhc
Q 012149 366 SGLLICMVRIVRAAVDSARQEDV---P---GFVNLILRCCVNALLSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRN 439 (470)
Q Consensus 366 GSLIvaiv~~lR~il~~~~~~~~---~---~~~~~~~~ccl~cle~~l~~~nk~Ayi~iAi~G~~F~~Sak~a~~L~~~n 439 (470)
|||++++++++|.++++++++.+ + +++.||++||+||+|++++|+|||||+++|||||+||+|||+||+|++||
T Consensus 383 GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N 462 (577)
T KOG1362|consen 383 GSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN 462 (577)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH
Confidence 99999999999999999997643 2 58999999999999999999999999999999999999999999999999
Q ss_pred ccceeeehhhhHHHHHHHHHHHhhheee
Q 012149 440 LLSAVFVETVSTRLLAGIIFVISAVYTI 467 (470)
Q Consensus 440 ~~~~~~~~~i~~~vL~g~~~v~s~~~~~ 467 (470)
..+++..|.++++++|+.++++++..|+
T Consensus 463 v~~vv~~d~vs~~llflgk~l~~~~~g~ 490 (577)
T KOG1362|consen 463 VLRVVDVDLVSDFLLFLGKLLGAIGSGV 490 (577)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999666666655543
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=1.3e-49 Score=404.44 Aligned_cols=253 Identities=24% Similarity=0.487 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCCC----
Q 012149 215 FLIIGVLVWIFVANWHRIELTVQIIGIASDALSKNLGLFVALPLLTLGLVVYYAPIVVFLVFARLNGKIVPKESNG---- 290 (470)
Q Consensus 215 ~~i~~i~i~~~~~~r~rI~~a~~il~~A~~~l~~~~~l~~v~p~~~~~~~~~~v~~~~~~v~~~~~G~~~~~~~~~---- 290 (470)
.+++++.++++++.||||+++++++|+|++++++||++++++++..++.+++.++|+...+++++.|+.+.++.++
T Consensus 7 ~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~~~~~~ 86 (334)
T PF04515_consen 7 LILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCNLPFSS 86 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCccc
Confidence 3344456677788999999999999999999999999997765555555678889999999999999877654322
Q ss_pred --CcceEECCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhheeeeEEeecCCC-CCCcchHHHHHHHcccccchhHHhhh
Q 012149 291 --EYKCVWKQDSWVPAYFALAILTMLWSLTSMVEAKAYVISGTIAQWYFSKED-TKPKRSIRSSLRNAFGPSSGSICLSG 367 (470)
Q Consensus 291 --~~~~~~~~~~~~~~~~~~~lf~~~W~~~fl~~~~~~tiAg~va~WYF~~~~-~~~~~pv~~s~~ra~~~hlGSi~~GS 367 (470)
.+.++++.+++..++.++++|+++|+++|++|++|+++||++++|||++++ ++|+.|+.+|++|+++|||||+|+||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GSi~~gS 166 (334)
T PF04515_consen 87 GSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGSICFGS 166 (334)
T ss_pred ccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHHHHHHH
Confidence 123677888888888899999999999999999999999999999999997 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCc---c---hHHHHHHHHHHHHHHHHHHhhcHhhhHhHhccCcchhHHHHHHHHHHHhccc
Q 012149 368 LLICMVRIVRAAVDSARQEDV---P---GFVNLILRCCVNALLSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRNLL 441 (470)
Q Consensus 368 LIvaiv~~lR~il~~~~~~~~---~---~~~~~~~~ccl~cle~~l~~~nk~Ayi~iAi~G~~F~~Sak~a~~L~~~n~~ 441 (470)
|++++++++|.++++++++.+ | +++.+|++||++|+|+++||+||+||+++||||++||+|||++++|++||+.
T Consensus 167 livaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~L~~~n~~ 246 (334)
T PF04515_consen 167 LIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFELIKRNGL 246 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhch
Confidence 999999999999999988654 2 3778889999999999999999999999999999999999999999999999
Q ss_pred ceeeehhhhHHHHHHHHHHHhhheee
Q 012149 442 SAVFVETVSTRLLAGIIFVISAVYTI 467 (470)
Q Consensus 442 ~~~~~~~i~~~vL~g~~~v~s~~~~~ 467 (470)
++..+|++++.+++...+.+++..|.
T Consensus 247 ~~~~~~~l~~~~l~~~~~~i~~~~~~ 272 (334)
T PF04515_consen 247 RAIIVDGLGSFVLFLGKLFISLLCGL 272 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998555566665553
No 3
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=54.88 E-value=33 Score=30.55 Aligned_cols=33 Identities=9% Similarity=0.317 Sum_probs=29.1
Q ss_pred HhhhHhHhccCcchhHHHHHHHHHHHhccccee
Q 012149 412 KFTINFAAITGEAYCSSARMTYELLKRNLLSAV 444 (470)
Q Consensus 412 k~Ayi~iAi~G~~F~~Sak~a~~L~~~n~~~~~ 444 (470)
-++.-.+.+.++++.+|-|++|++.++|.++..
T Consensus 104 if~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~~ 136 (149)
T PF10110_consen 104 IFVLPLIVLENKSFKEALKESWQLTKGRFWRIL 136 (149)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCcHHHHH
Confidence 356778899999999999999999999988854
No 4
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=50.32 E-value=41 Score=27.92 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=25.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012149 227 ANWHRIELTVQIIGIASDALSKNLGLFVALPLLTL 261 (470)
Q Consensus 227 ~~r~rI~~a~~il~~A~~~l~~~~~l~~v~p~~~~ 261 (470)
..+|+++. +-++.+++.+-+|.+++++++...+
T Consensus 30 L~~~~vk~--~~i~~~a~~Ll~~m~lfFvPa~VGi 62 (96)
T PF03788_consen 30 LMFKIVKL--EWIEPAANFLLKNMALFFVPAGVGI 62 (96)
T ss_pred HHcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777776 8889999999999999988664443
No 5
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.19 E-value=20 Score=31.28 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 012149 209 LVLVFVFLIIGVLVWIFVANWHRIEL 234 (470)
Q Consensus 209 ~~~~i~~~i~~i~i~~~~~~r~rI~~ 234 (470)
.+.|+++.+.++++++.|++|+|++.
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555555556666666664
No 6
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=42.22 E-value=38 Score=30.19 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012149 210 VLVFVFLIIGVLVWIFVANWHRIELTVQIIGIASDALS 247 (470)
Q Consensus 210 ~~~i~~~i~~i~i~~~~~~r~rI~~a~~il~~A~~~l~ 247 (470)
+.+|+..++.++++++||.+++-+.++++-|+..+++.
T Consensus 35 LiaIvVliiiiivli~lcssRKkKaaAAi~eediQfin 72 (189)
T PF05568_consen 35 LIAIVVLIIIIIVLIYLCSSRKKKAAAAIEEEDIQFIN 72 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhcccccC
Confidence 34555555566777788887777777888787766553
No 7
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=41.33 E-value=22 Score=30.07 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=27.0
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVET 448 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~ 448 (470)
-|||.+-|+.+|+|.+++.+|++.+-..|-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGVDYTAIDI 31 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCceEEecc
Confidence 489999999999999999999999888764
No 8
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=36.26 E-value=24 Score=31.00 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=27.9
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~ 448 (470)
+-|||.+-|+.+|+|.+.+.+|++.+-..|-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~ 32 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNL 32 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 4589999999999999999999999888764
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.40 E-value=30 Score=30.15 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=6.2
Q ss_pred HHHHHHHHhhhHH
Q 012149 221 LVWIFVANWHRIE 233 (470)
Q Consensus 221 ~i~~~~~~r~rI~ 233 (470)
++++++..|||.+
T Consensus 16 ~~~~~~~~rRR~r 28 (130)
T PF12273_consen 16 LFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHhh
Confidence 3333444556655
No 10
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=32.33 E-value=38 Score=25.82 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=26.5
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
-+|+.+-|+.+++|.+++.++++.....|--
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~ 34 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLREKGLPYVEINID 34 (73)
T ss_pred EEEecCCChhHHHHHHHHHHCCCceEEEECC
Confidence 4788999999999999999999988776543
No 11
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=31.99 E-value=29 Score=30.40 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=28.2
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-+||.+-|+.+++|.+++.+|++.+-..|-.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 45899999999999999999999998887643
No 12
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=31.82 E-value=37 Score=28.11 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=26.8
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVET 448 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~ 448 (470)
-+||.+-|..+++|.++++++++.+...|-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGIEYEFIDY 31 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEEee
Confidence 479999999999999999999998887764
No 13
>PRK12559 transcriptional regulator Spx; Provisional
Probab=30.18 E-value=34 Score=30.01 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=28.0
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-|||.+-|+.+|+|.+.+.++++.+-..|-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 45899999999999999999999998876643
No 14
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=30.08 E-value=6.7e+02 Score=26.34 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=21.6
Q ss_pred HHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012149 156 FLLLLLLKH----YTKQLVYVALPFFVIVPTFINVYWFVA 191 (470)
Q Consensus 156 ~~~l~llr~----~a~~lv~~~i~~~~~~~~~~~i~~~~~ 191 (470)
-+|.+++|. .+|..+.-++.++.+.++.++ ||.++
T Consensus 171 g~walf~Rk~~A~mPRvf~~RAlll~LV~~~~fa-yWLFY 209 (531)
T KOG3814|consen 171 GIWALFFRKAMADMPRVFVVRALLLVLVFLIVFA-YWLFY 209 (531)
T ss_pred HHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHH-HHHHH
Confidence 345666666 677777777776666655555 44433
No 15
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=27.99 E-value=50 Score=27.69 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=27.7
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
-+||.+=|.++|+|.+.+.+|+..+-..|-.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 3799999999999999999999999887754
No 16
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=27.82 E-value=55 Score=24.77 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=25.9
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
-+|+++.|+-++++-+++.++++.....|--
T Consensus 3 ~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~ 33 (75)
T cd03418 3 EIYTKPNCPYCVRAKALLDKKGVDYEEIDVD 33 (75)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCcEEEEECC
Confidence 4788899999999999999999988776543
No 17
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=27.15 E-value=48 Score=27.37 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=23.5
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeeh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~ 447 (470)
+-+|++++|+-++++.+++.+++.+...+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vd 39 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAVHE 39 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 457888888888888889999988765543
No 18
>PRK12438 hypothetical protein; Provisional
Probab=27.11 E-value=4.1e+02 Score=31.44 Aligned_cols=9 Identities=22% Similarity=-0.001 Sum_probs=5.4
Q ss_pred HHHcccccc
Q 012149 352 LRNAFGPSS 360 (470)
Q Consensus 352 ~~ra~~~hl 360 (470)
+.++-+-|+
T Consensus 205 ~s~~ar~hL 213 (991)
T PRK12438 205 LTQAARVQL 213 (991)
T ss_pred CCHHHHHHH
Confidence 445556677
No 19
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=27.00 E-value=53 Score=27.90 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=27.6
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
-+||.+-|+.+++|.+++.++++.+-..|-.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 3789999999999999999999998887754
No 20
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=24.83 E-value=61 Score=27.44 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=28.1
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-+||.+-|+.+|+|.+.+.+++..+-..|-.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 45899999999999999999999998887643
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=24.22 E-value=66 Score=25.35 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=23.8
Q ss_pred HhccCcchhHHHHHHHHHHHh-----cccceeeehh
Q 012149 418 AAITGEAYCSSARMTYELLKR-----NLLSAVFVET 448 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~-----n~~~~~~~~~ 448 (470)
+-+|+++.|+.+++|.+++.+ ++.....+|-
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi 38 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDI 38 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEEC
Confidence 457888888888888888888 7877766543
No 22
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=24.18 E-value=54 Score=25.27 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=25.0
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVET 448 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~ 448 (470)
-+|+++.|+-++++-+++.++++.....|-
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di 31 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGVTFTEIRV 31 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCCCcEEEEe
Confidence 478889999999999999999988777653
No 23
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=24.08 E-value=52 Score=26.26 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=31.3
Q ss_pred HHHHHhhcHhhhHhHhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 404 LSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 404 e~~l~~~nk~Ayi~iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+.+++|+|+.+ |+.|-.+++.+.++++.+.-+-..++.+
T Consensus 2 ~eii~yLN~kt-------g~~y~~~~k~~~~lI~aR~~eg~~~~df 40 (77)
T TIGR02220 2 KEIIEYLNEKA-------GKSFKHTTAKHKKLIKARWNEGYTLEDF 40 (77)
T ss_pred hHHHHHHHHhc-------CcccccccHhHHHHHHHHHHcCCCHHHH
Confidence 46789999976 9999999999999999877665555444
No 24
>PRK10853 putative reductase; Provisional
Probab=24.01 E-value=66 Score=27.62 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=28.6
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-+||.+=|.++|+|.+.+.+|+..+...|-.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 45899999999999999999999999887754
No 25
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=21.73 E-value=71 Score=27.21 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=28.0
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
-+||.+=|.++|+|.+.+.+|+..+-..|-.
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 4799999999999999999999999887754
No 26
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=21.28 E-value=87 Score=23.78 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=24.8
Q ss_pred ccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 420 ITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 420 i~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+|+.+-|+.++++-+++.++++..-..|--
T Consensus 3 ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~ 32 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEEHGIAFEEINID 32 (72)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCceEEEECC
Confidence 688888889999999999999988776543
No 27
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.91 E-value=2.3e+02 Score=24.31 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 012149 206 YRILVLVFVFLIIGV 220 (470)
Q Consensus 206 ~~~~~~~i~~~i~~i 220 (470)
+.+.+.|+++.+-|+
T Consensus 77 ~~llilG~L~fIPG~ 91 (115)
T PF05915_consen 77 WALLILGILCFIPGF 91 (115)
T ss_pred chHHHHHHHHHhccH
Confidence 344566666666665
No 28
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=20.50 E-value=6.5e+02 Score=23.58 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 012149 214 VFLIIGVLVWIFVANWHRIE 233 (470)
Q Consensus 214 ~~~i~~i~i~~~~~~r~rI~ 233 (470)
.+.+..+...+++.+|+|++
T Consensus 180 ~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 180 IFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHhhhhc
Confidence 33444456666777888876
No 29
>PRK10638 glutaredoxin 3; Provisional
Probab=20.48 E-value=80 Score=24.75 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=26.6
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~ 448 (470)
+-+|+++.|+-++++.+++.++++....+|-
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv 34 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPI 34 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEC
Confidence 4589999999999999999999998877654
Done!