Query 012149
Match_columns 470
No_of_seqs 187 out of 682
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 03:44:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fz4_A Putative arsenate reduc 31.9 16 0.00055 30.2 1.3 33 417-449 4-36 (120)
2 3f0i_A Arsenate reductase; str 30.7 29 0.001 28.5 2.8 33 417-449 5-37 (119)
3 3l78_A Regulatory protein SPX; 30.2 19 0.00066 29.6 1.6 32 418-449 2-33 (120)
4 3rdw_A Putative arsenate reduc 29.8 30 0.001 28.5 2.7 32 418-449 7-38 (121)
5 2lqo_A Putative glutaredoxin R 28.8 16 0.00055 28.7 0.8 31 418-448 6-36 (92)
6 1rw1_A Conserved hypothetical 27.2 31 0.001 27.9 2.3 32 418-449 2-33 (114)
7 3gkx_A Putative ARSC family re 26.8 30 0.001 28.5 2.2 32 418-449 6-37 (120)
8 1s3c_A Arsenate reductase; ARS 24.9 41 0.0014 28.5 2.8 32 418-449 4-35 (141)
9 2kok_A Arsenate reductase; bru 24.3 33 0.0011 28.0 2.0 32 418-449 7-38 (120)
10 1aba_A Glutaredoxin; electron 19.2 57 0.0019 24.4 2.3 30 419-448 3-36 (87)
No 1
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=31.90 E-value=16 Score=30.18 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=28.8
Q ss_pred hHhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 417 ~iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
++-+||.+-|+.+|+|.+++++++..+-..|-.
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~~~~di~ 36 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWDYDAIDIK 36 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCCEEEEETT
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCceEEEEec
Confidence 466899999999999999999999998776643
No 2
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=30.69 E-value=29 Score=28.49 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=29.1
Q ss_pred hHhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 417 ~iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
.+-+||.+-|..+|+|.+++++++..+-..|-.
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~ 37 (119)
T 3f0i_A 5 SVVIYHNPKCSKSRETLALLENQGIAPQVIKYL 37 (119)
T ss_dssp CCEEECCTTCHHHHHHHHHHHHTTCCCEEECHH
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCceEEEEec
Confidence 467899999999999999999999988877654
No 3
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=30.20 E-value=19 Score=29.58 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=27.8
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-+||.+-|+.+++|-+++.+++..+-..|-.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~~di~ 33 (120)
T 3l78_A 2 VTLFLSPSCTSCRKARAWLNRHDVVFQEHNIM 33 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCEEEEETT
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 45899999999999999999999988776643
No 4
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=29.80 E-value=30 Score=28.47 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=28.2
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-|||.+-|..+|+|.+++++++..+-..|-.
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~ 38 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITPQVVLYL 38 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCCEEECTT
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 56899999999999999999999988776644
No 5
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=28.85 E-value=16 Score=28.67 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=25.6
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~ 448 (470)
+-||+++.|+-++++-+++.++++.+..+|-
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi 36 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTANRIAYDEVDI 36 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHHTTCCCEEEET
T ss_pred EEEEcCCCCHhHHHHHHHHHhcCCceEEEEc
Confidence 4578888888888888999999998877653
No 6
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=27.20 E-value=31 Score=27.94 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=27.8
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-+||.+-|+.+++|-+++.++++.+-..|-.
T Consensus 2 i~iY~~~~C~~C~kak~~L~~~gi~~~~~di~ 33 (114)
T 1rw1_A 2 YVLYGIKACDTMKKARTWLDEHKVAYDFHDYK 33 (114)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCceEEEeec
Confidence 34899999999999999999999998777654
No 7
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=26.81 E-value=30 Score=28.45 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=28.3
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-+||.+-|..+|+|.+++.+++..+-..|-.
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~ 37 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIEYTNRLIV 37 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEETT
T ss_pred EEEEECCCChHHHHHHHHHHHcCCceEEEecc
Confidence 56899999999999999999999998876643
No 8
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=24.93 E-value=41 Score=28.49 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=28.3
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-|||.+-|..+|+|.+++.+++..+-..|-.
T Consensus 4 itiY~~p~C~~crkak~~L~~~gi~~~~idi~ 35 (141)
T 1s3c_A 4 ITIYHNPASGTSRNTLEMIRNSGTEPTIILYL 35 (141)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCCEEECTT
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCEEEEECC
Confidence 45899999999999999999999998777654
No 9
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=24.26 E-value=33 Score=27.97 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=28.3
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-+||.+.|..+++|.+++.++++.+-..|-.
T Consensus 7 i~iY~~~~C~~C~ka~~~L~~~gi~y~~~di~ 38 (120)
T 2kok_A 7 VTIYGIKNCDTMKKARIWLEDHGIDYTFHDYK 38 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCEEEEEHH
T ss_pred EEEEECCCChHHHHHHHHHHHcCCcEEEEeee
Confidence 56899999999999999999999998777654
No 10
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=19.21 E-value=57 Score=24.42 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=23.7
Q ss_pred hccCcc----hhHHHHHHHHHHHhcccceeeehh
Q 012149 419 AITGEA----YCSSARMTYELLKRNLLSAVFVET 448 (470)
Q Consensus 419 Ai~G~~----F~~Sak~a~~L~~~n~~~~~~~~~ 448 (470)
-+|+++ .|+-+++|.+++.+++++.-..|-
T Consensus 3 ~iY~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI 36 (87)
T 1aba_A 3 KVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINI 36 (87)
T ss_dssp EEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEeCCCCCcCccHHHHHHHHHHcCCCEEEEEe
Confidence 467778 888888888899999988766553
Done!