Query 012149
Match_columns 470
No_of_seqs 187 out of 682
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 03:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012149.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012149hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rw1a_ c.47.1.12 (A:) Hypothe 27.0 14 0.0011 28.0 2.3 32 419-450 3-34 (114)
2 d1z3ea1 c.47.1.12 (A:1-114) Re 26.9 12 0.00084 28.7 1.6 32 418-449 2-33 (114)
3 d1nm3a1 c.47.1.1 (A:166-239) C 19.8 22 0.0016 24.4 1.8 30 418-447 7-36 (74)
4 d1r7ha_ c.47.1.1 (A:) Glutared 18.4 28 0.0021 23.7 2.2 31 418-448 3-33 (74)
5 d1j9ba_ c.47.1.12 (A:) Arsenat 18.0 33 0.0024 26.9 2.8 31 419-449 3-33 (138)
6 d1h75a_ c.47.1.1 (A:) Glutared 16.3 34 0.0025 23.5 2.2 31 419-449 4-34 (76)
7 d1fova_ c.47.1.1 (A:) Glutared 12.3 36 0.0026 23.7 1.3 31 418-448 3-33 (82)
8 d1egoa_ c.47.1.1 (A:) Glutared 10.7 41 0.003 23.6 1.1 23 418-440 3-25 (85)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 8.2 1.8E+02 0.013 15.9 3.5 24 72-95 5-28 (30)
10 d2fcra_ c.23.5.1 (A:) Flavodox 7.9 94 0.0068 24.9 2.5 24 421-444 98-121 (173)
No 1
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.05 E-value=14 Score=28.01 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=28.6
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehhhh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVETVS 450 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~i~ 450 (470)
-+||.+=|.++|+|.+.+..|+..+-+.|-+-
T Consensus 3 ~iY~~p~Cs~srka~~~L~~~~i~~~~idy~k 34 (114)
T d1rw1a_ 3 VLYGIKACDTMKKARTWLDEHKVAYDFHDYKA 34 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEECCCChHHHHHHHHHHHcCCCeEEEEccc
Confidence 37999999999999999999999999887653
No 2
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=26.92 E-value=12 Score=28.69 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=28.3
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
+-+||.+=|..+|+|.+.++.|+..+...|-.
T Consensus 2 i~ly~~~~C~~~rka~~~L~~~~i~~~~~d~~ 33 (114)
T d1z3ea1 2 VTLYTSPSCTSCRKARAWLEEHEIPFVERNIF 33 (114)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEETT
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCCeEEEeee
Confidence 45899999999999999999999998887654
No 3
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=19.83 E-value=22 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=22.7
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeeh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~ 447 (470)
|-||+++.|+=+++|-+|+.++++.....+
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~~i~~~~~~ 36 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDKGLSFEEII 36 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 346777777778888888999988776554
No 4
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=18.45 E-value=28 Score=23.71 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=24.9
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~ 448 (470)
+-+|+++.|+=++++-++++++++.....+-
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~~i~~~~~~i 33 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRAGLAYNTVDI 33 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEET
T ss_pred EEEEeCCCChhHHHHHHHHHHcCCceEEEEc
Confidence 3478888888888888899999998876653
No 5
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=18.00 E-value=33 Score=26.91 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=27.8
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
-+|+.+=|..+|+|.++++.|+..+-+.|-+
T Consensus 3 ~iY~~p~Cs~srkal~~L~~~~i~~~~idy~ 33 (138)
T d1j9ba_ 3 TIYHNPACGTSRNTLEMIRNSGTEPTIILYL 33 (138)
T ss_dssp EEECCTTCHHHHHHHHHHHHTTCCCEEECTT
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCeEEEeec
Confidence 4789999999999999999999998887754
No 6
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=16.25 E-value=34 Score=23.49 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=25.1
Q ss_pred hccCcchhHHHHHHHHHHHhcccceeeehhh
Q 012149 419 AITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (470)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~~n~~~~~~~~~i 449 (470)
-+|+++.|.-++++-+++.++++.....|--
T Consensus 4 ~iYs~~~C~~C~~ak~~L~~~~i~y~~~~i~ 34 (76)
T d1h75a_ 4 TIYTRNDCVQCHATKRAMENRGFDFEMINVD 34 (76)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCCCEEEETT
T ss_pred EEEeCCCCccHHHHHHHHHhcCceeEEEeec
Confidence 4788888888888888999999988776643
No 7
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}
Probab=12.33 E-value=36 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=23.0
Q ss_pred HhccCcchhHHHHHHHHHHHhcccceeeehh
Q 012149 418 AAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~ 448 (470)
|-||+++.|+=++++-++++++++.....|-
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~~i~y~~~di 33 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPI 33 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEEC
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCeEEEec
Confidence 3467777777777777889999888776653
No 8
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=10.71 E-value=41 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=17.1
Q ss_pred HhccCcchhHHHHHHHHHHHhcc
Q 012149 418 AAITGEAYCSSARMTYELLKRNL 440 (470)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~ 440 (470)
+-||+++.|+=+++|-+|+.+++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~ 25 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLS 25 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcC
Confidence 34677788888888888887755
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.22 E-value=1.8e+02 Score=15.94 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhhcccCccC
Q 012149 72 LFILFVISTFGLGIFSICNKNQNY 95 (470)
Q Consensus 72 lFl~~~~~~i~~~~~~~~~~~~~~ 95 (470)
.|.+.++..++..++++..+.|.|
T Consensus 5 ~yv~ifac~i~lfffaiffreppr 28 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred ehHHHHHHHHHHHHHHHHhcCCCC
Confidence 444444455555555555555543
No 10
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Probab=7.88 E-value=94 Score=24.95 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=21.2
Q ss_pred cCcchhHHHHHHHHHHHhccccee
Q 012149 421 TGEAYCSSARMTYELLKRNLLSAV 444 (470)
Q Consensus 421 ~G~~F~~Sak~a~~L~~~n~~~~~ 444 (470)
|++.||+|+++-.+.++++|...+
T Consensus 98 y~~~F~~a~~~l~~~l~~~GA~~I 121 (173)
T d2fcra_ 98 YPDNFCDAIEEIHDCFAKQGAKPV 121 (173)
T ss_dssp CTTSTTTHHHHHHHHHHHTTCEEE
T ss_pred chhhHHHHHHHHHHHHHhCCCEEe
Confidence 568899999999999999997765
Done!