Query 012150
Match_columns 470
No_of_seqs 244 out of 576
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 23:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2154 Predicted nucleolar pr 100.0 2.6E-68 5.6E-73 547.6 27.1 266 130-425 226-492 (505)
2 KOG2038 CAATT-binding transcri 100.0 2.7E-49 5.8E-54 423.9 21.2 254 138-414 468-764 (988)
3 PF03914 CBF: CBF/Mak21 family 100.0 1.7E-40 3.7E-45 306.7 13.2 162 195-370 1-164 (164)
4 COG5593 Nucleic-acid-binding p 100.0 6.9E-32 1.5E-36 281.6 18.0 342 14-424 264-621 (821)
5 COG5117 NOC3 Protein involved 99.9 1.3E-20 2.8E-25 195.1 18.1 205 141-375 406-654 (657)
6 KOG2153 Protein involved in th 99.7 2.6E-17 5.6E-22 176.6 16.9 214 141-406 459-685 (704)
7 KOG2153 Protein involved in th 98.0 1.6E-05 3.4E-10 87.0 8.4 146 201-374 544-700 (704)
8 KOG1058 Vesicle coat complex C 75.1 27 0.00058 40.5 11.2 99 195-296 333-434 (948)
9 PF14500 MMS19_N: Dos2-interac 49.4 2.7E+02 0.0058 28.1 12.0 111 179-290 41-156 (262)
10 PF08167 RIX1: rRNA processing 37.0 97 0.0021 28.8 6.2 79 214-292 65-148 (165)
11 KOG0946 ER-Golgi vesicle-tethe 35.6 8.2E+02 0.018 29.2 14.1 48 232-279 253-304 (970)
12 PF10979 DUF2786: Protein of u 26.4 1.3E+02 0.0028 22.3 4.1 35 256-290 3-39 (43)
13 PF06465 DUF1087: Domain of Un 25.7 66 0.0014 26.3 2.6 39 348-388 23-61 (66)
14 PF09068 EF-hand_2: EF hand; 24.0 1.1E+02 0.0025 27.5 4.2 65 142-206 46-125 (127)
15 PF04499 SAPS: SIT4 phosphatas 22.8 5.9E+02 0.013 28.1 10.1 112 170-290 25-151 (475)
16 cd00183 TFIIS_I N-terminal dom 22.2 74 0.0016 25.9 2.4 21 354-374 49-69 (76)
17 PF08613 Cyclin: Cyclin; Inte 21.7 1.4E+02 0.0031 27.2 4.4 36 251-287 49-84 (149)
18 PF12717 Cnd1: non-SMC mitotic 21.4 6.6E+02 0.014 23.3 12.0 113 155-267 37-159 (178)
19 COG5218 YCG1 Chromosome conden 20.8 4.7E+02 0.01 30.2 8.7 88 196-287 9-98 (885)
20 PF01603 B56: Protein phosphat 20.7 2.3E+02 0.0049 30.4 6.3 63 234-296 106-171 (409)
No 1
>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-68 Score=547.59 Aligned_cols=266 Identities=43% Similarity=0.735 Sum_probs=251.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhccccCChhhHhhHHHHhhh-cCcchHHHHHHHHHHHHH
Q 012150 130 LSAAIISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYD-IGGVVSVMALSSLFILMT 208 (470)
Q Consensus 130 ~~~~~~~~~~k~~~~~awL~~L~~al~~~l~k~vL~~L~k~I~pHl~NP~lL~DFLtd~~d-~gg~isllAL~~LF~L~~ 208 (470)
++.+...++.|+.|+.+|+++++..+|..+++++|.+++++|+||+..|..+|||||++|| .||++||+||+|||+||+
T Consensus 226 p~~~~~~~~~~k~f~~~Wls~l~~~ls~~lykkil~vih~rvip~l~~P~kl~DFLtdsyd~~~g~vslLALngLF~Lm~ 305 (505)
T KOG2154|consen 226 PKQTENEKQIRKSFQNMWLSSLNGELSLKLYKKILLVIHKRVIPHLISPTKLMDFLTDSYDDIGGVVSLLALNGLFILMT 305 (505)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHhccCCchhHHHHhHHHHHHH
Confidence 4556677888999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred hcCCCcchHHHHHHHhhCcCcccchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHh
Q 012150 209 QHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRR 288 (470)
Q Consensus 209 ~~Nld~prFY~~LY~LLdP~l~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFIKRLlrlaL~aPp~~~~~iL~lI~nLLkr 288 (470)
+||++||.||.+||+||+|++||.|||+|||+|+|.||+|+|||+++||||+|||+|+||.+||.+++.+|+||+||++|
T Consensus 306 khNleYP~FY~KLY~Ll~Pslfh~KyRarff~L~D~FLSSTHLpa~LvAsFlKrLaRlaL~APpeA~~~vipfI~Nll~r 385 (505)
T KOG2154|consen 306 KHNLEYPDFYEKLYALLNPSLFHVKYRARFFRLADLFLSSTHLPAYLVASFLKRLARLALEAPPEAIVIVIPFICNLLRR 385 (505)
T ss_pred HcCCCCchHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHHHHHHHhhccChHHHHH
Q 012150 289 HPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRF 368 (470)
Q Consensus 289 hP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HYHPsVa~~ 368 (470)
||+|+.|+|++...+ ...||||+.+.||.+++|++||||||.+||.||||+|+..
T Consensus 386 Hp~c~~lvhr~~~~~-------------------------~~~Dpfd~~EtDP~ks~ALeSSLWEL~~Lq~Hy~p~Va~~ 440 (505)
T KOG2154|consen 386 HPNCQPLVHRSHALS-------------------------LYDDPFDNDETDPKKSGALESSLWELELLQTHYHPEVAKA 440 (505)
T ss_pred CCchhhhhccccccc-------------------------CCCCCCCCCCCChhhhhhHHHHHHHHHHHHHhhcHHHHHH
Confidence 999999999987632 2349999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccccccCcCCCCcHHHHHHHHHhccCCCCCcccccCCCCCCCCC
Q 012150 369 VLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSD 425 (470)
Q Consensus 369 A~~l~~~~~i~~k~~~y~~edflD~sy~~lld~e~~k~~k~~p~~~~~~~p~~lf~~ 425 (470)
|+.+.+++++ ++|+++|++|++|..++|+|++|+.|..|-.+|+ -++++++.
T Consensus 441 A~~~~q~~~k----~ef~~ed~ld~~y~~l~d~el~~kgk~~p~lefe-~~t~~~g~ 492 (505)
T KOG2154|consen 441 ASFFNQSLYK----PEFGLEDGLDSKYSVLQDGELSRKGKRFPPLEFE-RRTGLGGR 492 (505)
T ss_pred HHHHhccCcc----ccccCcchhhhhhHHhhcchhhcccCCCCCcccc-cccccCCc
Confidence 9999998875 6899999999999999999999999966666665 36888876
No 2
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=100.00 E-value=2.7e-49 Score=423.93 Aligned_cols=254 Identities=26% Similarity=0.372 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHhccCCCC-----hhhHHHHHHHhhhhhccccCChhhHhhHHHHhhhcCcchHHHHHHHHHHHHHhcCC
Q 012150 138 KMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGL 212 (470)
Q Consensus 138 ~~k~~~~~awL~~L~~al~-----~~l~k~vL~~L~k~I~pHl~NP~lL~DFLtd~~d~gg~isllAL~~LF~L~~~~Nl 212 (470)
+..+++.+|.|||+|||+| .+.+..++..|++ +.|.+| |+| |||||++|||++....+
T Consensus 468 e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFk--l~HssN------FNT---------sVQaLmLlfQvs~~~~~ 530 (988)
T KOG2038|consen 468 ELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFK--LTHSSN------FNT---------SVQALMLLFQVSKKNDY 530 (988)
T ss_pred hhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHH--HHhhcc------cch---------hHHHHHHHHHHHHhhhh
Confidence 4588999999999999987 5689999999999 999999 997 99999999999999999
Q ss_pred CcchHHHHHHH-hhCcCcccchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCcc
Q 012150 213 EYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPS 291 (470)
Q Consensus 213 d~prFY~~LY~-LLdP~l~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFIKRLlrlaL~aPp~~~~~iL~lI~nLLkrhP~ 291 (470)
.++|||++||+ ||||+++.++++++|++||+++|+.|. ++.||+||||||+|+|++++|+++||+|.++++|++..|.
T Consensus 531 vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~-ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~Karp~ 609 (988)
T KOG2038|consen 531 VSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDI-NIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLKARPT 609 (988)
T ss_pred hHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHHhcch
Confidence 99999999999 999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCC--------CCch--------hHHHHHH---------hhh-----hhc-------ccCCCCCCCCC
Q 012150 292 INCLLHREDGNETHN--------DDSK--------AEKEIVD---------AAT-----VAN-------ISSIKPGIDHF 334 (470)
Q Consensus 292 l~~Ll~~~~~~~~~~--------~~~~--------~ege~~d---------~~~-----~~~-------~~~~~~~~d~Y 334 (470)
++.|+.+.+..+.+. ++.+ .+|..++ +.. ... .-..+...++|
T Consensus 610 l~~lv~~~~~~D~e~dv~~~~e~DD~deek~vd~Dke~~~vdk~~~e~~~~e~ds~s~k~E~~~~~~~d~~~~~~~~~~Y 689 (988)
T KOG2038|consen 610 LRKLVVNSEDIDPEEDVVAQMENDDVDEEKKVDLDKEGKEVDKNGVEEEVEEEDSVSEKKEDLDKKKVDPIGARGAKTPY 689 (988)
T ss_pred HHHHhhCCcccChhhhhhhhhcccccchhhhccccccceeecccccccccccccccccchhhhhhhhccccccccCCCCC
Confidence 999987655432211 0111 1111110 000 000 01123456799
Q ss_pred CCCCCCCcCCCCCcchHHHHHHHhhccChHHHHHHHHhhhcccccccccccccCcCCCCcHHHHHHHHHhccCCCCCccc
Q 012150 335 DDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAF 414 (470)
Q Consensus 335 dp~~rDP~~~nA~~SsLWEL~~L~~HYHPsVa~~A~~l~~~~~i~~k~~~y~~edflD~sy~~lld~e~~k~~k~~p~~~ 414 (470)
||.+|||.+|||..||||||..|.+||||+|+.||+.|.+|..|+ |+++|+.|||+++||||++.|.+|++.-+.
T Consensus 690 D~r~R~P~f~nAd~tslWEl~~ls~HfHPSVa~~Akall~G~~i~-----y~g~~L~dfTL~~FLDrF~yRnPK~~t~~~ 764 (988)
T KOG2038|consen 690 DPRKRNPLFCNADHTSLWELLLLSKHFHPSVATFAKALLEGEEIQ-----YGGPPLNDFTLMAFLDRFAYRNPKQVTKAR 764 (988)
T ss_pred CcccCCccccCCccchHHHHHHHhhhcCchHHHHHHHHhcCceee-----cCCCchhHHHHHHHHHHHHhcCcccccccC
Confidence 999999999999999999999999999999999999999999986 999999999999999999999999887654
No 3
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=100.00 E-value=1.7e-40 Score=306.71 Aligned_cols=162 Identities=41% Similarity=0.702 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHhcCCCcchHHHHHHHhh-CcCcccchhH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCCh
Q 012150 195 VSVMALSSLFILMTQHGLEYPNFYEKLYALL-VPSIFMAKHR-AKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPP 272 (470)
Q Consensus 195 isllAL~~LF~L~~~~Nld~prFY~~LY~LL-dP~l~~sk~r-a~Fl~LL~~~Lks~~Lp~~rVAAFIKRLlrlaL~aPp 272 (470)
++|+||.++|+|++++|+|+++||++||++| +|..++++++ .+||++++++|+++++|..|||||||||+|+|+++||
T Consensus 1 ~~i~al~~l~~l~~~~n~d~~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l~~~~~~~~rvaAFiKRLl~~sl~~~~ 80 (164)
T PF03914_consen 1 TCIQALFLLFQLLSGQNIDLDRFYRALYSLLLDPELFSSSDKSALLLNLLDKSLKSDHLPIQRVAAFIKRLLQLSLHLPP 80 (164)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchhhccccchHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4899999999999999999999999999966 9999998865 5599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHH
Q 012150 273 SGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLW 352 (470)
Q Consensus 273 ~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLW 352 (470)
++++++|.+|++|+++||.|+.|+++++...+ .+.+++++ .....++|+|+++||++|||..|+||
T Consensus 81 ~~~~~~L~~i~~ll~~~p~l~~ll~~~~~~~~--~~~~~~~~------------~~~~~~~Y~p~~~dP~~~~a~~s~lW 146 (164)
T PF03914_consen 81 SFALAILALIRKLLKRHPNLKSLLDNEEKKAD--SGSEEEDE------------EDKSEDKYDPEKRDPEFSNALASSLW 146 (164)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHhcCCccccc--cchhhccc------------ccccccccCcCCCCHhHcCCchhHHH
Confidence 99999999999999999999999988775321 01111111 12355799999999999999999999
Q ss_pred HHHHHhhccChHHHHHHH
Q 012150 353 EIDTLRHHYCPPVSRFVL 370 (470)
Q Consensus 353 EL~~L~~HYHPsVa~~A~ 370 (470)
||.+|++||||+|+.+|+
T Consensus 147 EL~lL~~H~hP~V~~~A~ 164 (164)
T PF03914_consen 147 ELNLLRNHYHPSVRQFAR 164 (164)
T ss_pred HHHHHHHCCCcHHHHHhC
Confidence 999999999999999985
No 4
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=6.9e-32 Score=281.63 Aligned_cols=342 Identities=21% Similarity=0.211 Sum_probs=248.1
Q ss_pred HHHHHHHHhhhhh--------ccchHHHHHHHHHhhcCCCCCCCCCCCCCCcccCchhhHHHHHHHHHHHHHhCC-CCCC
Q 012150 14 GSVTDFLASKYFN--------YFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIP-SMED 84 (470)
Q Consensus 14 ~~~~~~~~~~y~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~~-~~~~ 84 (470)
..+++..+.-||+ ||+.+++....-+..+++.. ..+++.+|.++..|. .+|+
T Consensus 264 ~VV~d~Iedf~f~pn~~~~s~yyalitLnqt~l~~~e~~va-------------------n~lv~vyf~~f~kfl~n~~k 324 (821)
T COG5593 264 EVVLDGIEDFYFKPNDLFRSRYYALITLNQTELENREKAVA-------------------NKLVKVYFSIFRKFLENIPK 324 (821)
T ss_pred HHHHhhhhHheeccccccceeeeeehhhHHHHHhhhHHHHH-------------------HHHHHHHHHHHHHHHhcCch
Confidence 3466677888888 99999998776554432211 355777777776665 3332
Q ss_pred CcchhhhhcccccCCCCcccchHHhhhhhhccccCcchhhccCCcCcHHHHHHHHHHHHHHHHHHhccCCCC-----hhh
Q 012150 85 NNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNALSAAIISKKMKSKFTKAWITFLRLPLP-----VDI 159 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~awL~~L~~al~-----~~l 159 (470)
.. . + +...+++..+++-.+.+ .+++....-.-..+...+..+++.++.|+|+||+.| ...
T Consensus 325 e~--~--------~---~s~~leek~~~~~~Knk--~s~K~~k~e~~rkev~~eknS~~~savLtG~nRa~pfa~l~~~~ 389 (821)
T COG5593 325 EH--R--------V---NSNILEEKLVIGLGKNK--GSEKICKTEIIRKEVHTEKNSFYGSAVLTGCNRAGPFALLFRNA 389 (821)
T ss_pred hh--c--------c---cchhHHHHHHhhhccCC--CCcccccHHHHHHHHHHhhhhHHHHHHHhcccccCchhhhhHHH
Confidence 11 0 0 11223333322211111 111111111111222334578899999999999865 678
Q ss_pred HHHHHHHhhhhhccccCChhhHhhHHHHhhhcCcchHHHHHHHHHHHHHhcCCCcchHHHHHHH-hhCcCcccchhHHHH
Q 012150 160 YKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYA-LLVPSIFMAKHRAKF 238 (470)
Q Consensus 160 ~k~vL~~L~k~I~pHl~NP~lL~DFLtd~~d~gg~isllAL~~LF~L~~~~Nld~prFY~~LY~-LLdP~l~~sk~ra~F 238 (470)
++.++.+|++ +.|-.+ |+| ++|||++++|..-+.-++++|||+.||. |+||.+..++++..+
T Consensus 390 ~~~Hm~tlfk--ith~~~------fnt---------s~qalmli~q~~~~~~l~SdryY~~lYesl~dprls~ssKqgiy 452 (821)
T COG5593 390 VKSHMMTLFK--ITHEFL------FNT---------SEQALMLIDQEFYRFLLDSDRYYTPLYESLIDPRLSESSKQGIY 452 (821)
T ss_pred HHHHHHHHHh--hhhhhh------hhH---------HHHHHHHHHHHHHHHhhccchhhhhHHHHHhhhhhhcccccchh
Confidence 8999999999 999988 886 9999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHH
Q 012150 239 FELLDSCLRSPLLPAYLAAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVD 317 (470)
Q Consensus 239 l~LL~~~Lks~~Lp~~rVAAFIKRLlrlaL~-aPp~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d 317 (470)
++|+++.|+-+. ++.||-||+||++|+|-+ +.++++.+....+.+|-+.-|.++.|+.+.+-+ -+ .+++.+++..
T Consensus 453 lnllykSL~vd~-nV~rv~af~kr~lQv~S~w~~~p~~tg~f~~l~ql~~a~~~lk~l~tn~~vd-~e-~e~d~~eeq~- 528 (821)
T COG5593 453 LNLLYKSLRVDT-NVHRVDAFRKRALQVISGWMVLPFDTGDFMSLLQLEMACGDLKNLLTNTPVD-YE-YESDAEEEQG- 528 (821)
T ss_pred HHHHHHHHHHhc-CchHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHhHHHHHHhcCCCcc-cc-cccchhhhhc-
Confidence 999999999998 899999999999999755 456788888889999999999999999876542 11 1111111110
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHHHHHHHhhccChHHHHHHHHhhhcccccccccccccCcCCCCcHHH
Q 012150 318 AATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYAT 397 (470)
Q Consensus 318 ~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HYHPsVa~~A~~l~~~~~i~~k~~~y~~edflD~sy~~ 397 (470)
. +.+....||..+|||.++||..||||||..+.+||||+|..+|+.+..|..+-.| -|+-=||+..
T Consensus 529 -----d---kd~krkeydgrkrdpk~anae~s~lwei~~finhfhptv~~~a~a~v~ge~~i~k------p~l~l~tl~h 594 (821)
T COG5593 529 -----D---KDIKRKEYDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTYANAYVTGEEQIAK------PDLGLFTLSH 594 (821)
T ss_pred -----c---cchhhhhccCcccCcccccccccchhhhhhhhhhcccHHHHHHHHhhhhhhhhcC------CCcchhhHHH
Confidence 0 1122346999999999999999999999999999999999999999988864222 2344489999
Q ss_pred HHHHHHhccCCCCCcccccCCCCCCCC
Q 012150 398 IFGEEIRRRVKQVPLAFYKTTPTSLFS 424 (470)
Q Consensus 398 lld~e~~k~~k~~p~~~~~~~p~~lf~ 424 (470)
|||+++.|..|+-..+--..|=.-||+
T Consensus 595 fldrf~yr~~kqt~~arg~simqpl~~ 621 (821)
T COG5593 595 FLDRFVYRSAKQTNTARGTSIMQPLFS 621 (821)
T ss_pred HHHHHHhcCcccccccccchhhhhhhc
Confidence 999999999988766543333333443
No 5
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=99.86 E-value=1.3e-20 Score=195.09 Aligned_cols=205 Identities=20% Similarity=0.251 Sum_probs=173.2
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHhhhhhccccCChhhHhhHHHHhhhc---------Cc---chHHHHHHHHHHHHH
Q 012150 141 SKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI---------GG---VVSVMALSSLFILMT 208 (470)
Q Consensus 141 ~~~~~awL~~L~~al~~~l~k~vL~~L~k~I~pHl~NP~lL~DFLtd~~d~---------gg---~isllAL~~LF~L~~ 208 (470)
+..+..||.+|+. --.++++.||+||.| +.|+.||++|+|||..+|.+ |. .-+++|+.+.|.|++
T Consensus 406 kiif~~Yf~vLk~-~~k~lig~vleGl~k--~~~~~n~eflGD~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S 482 (657)
T COG5117 406 KIIFRLYFMVLKG-DRKDLIGYVLEGLVK--YRKIINPEFLGDLLEVLYELLNDNPLDKISSDARRQALLCILTAFEIAS 482 (657)
T ss_pred HHHHHHHHHHHhc-chHHHHHHHHHHHHH--HHhhcCHHHHhHHHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhh
Confidence 4455566777753 335799999999999 99999999999999998853 11 358899999999986
Q ss_pred h-----cCCCcchHHHHHHHhhCc-----Cccc---------------------chhHHHHHHHHHH-HhcCCCChHHHH
Q 012150 209 Q-----HGLEYPNFYEKLYALLVP-----SIFM---------------------AKHRAKFFELLDS-CLRSPLLPAYLA 256 (470)
Q Consensus 209 ~-----~Nld~prFY~~LY~LLdP-----~l~~---------------------sk~ra~Fl~LL~~-~Lks~~Lp~~rV 256 (470)
. .|+|.+.|-..||+++.| ++-- +....+++..++. |+++......|.
T Consensus 483 ~t~ygk~n~Dl~~fVd~lY~~v~p~~l~pD~dLn~k~~RL~DP~~~~~~~~VN~tt~~e~LlK~~~~~Ffksk~~~~~r~ 562 (657)
T COG5117 483 ATLYGKENYDLGGFVDLLYSMVHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNATTDNEELLKIVRLLFFKSKQPVHRRH 562 (657)
T ss_pred hhhhhhccccHHHHHHHHHHHhCcccCCcchhhhhhhhhhcCCcccccCccccccccHHHHHHHHHHHheeccCchHHHH
Confidence 5 589999999999997644 2210 1233567777654 678998888999
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCC
Q 012150 257 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDD 336 (470)
Q Consensus 257 AAFIKRLlrlaL~aPp~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp 336 (470)
.+|-|||+-.|.+.|..+..++|.++..|+.|+|.|..+..++.+ .|.|.|+|
T Consensus 563 ~~f~krl~~c~s~~pe~~~~ail~~~~kl~~rys~~s~l~~sE~~---------------------------ig~g~~~~ 615 (657)
T COG5117 563 VIFKKRLLYCCSRSPEEFKGAILDISAKLDIRYSDCSNLKCSEFD---------------------------IGAGNVDS 615 (657)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhhhhccCccCchhh---------------------------cCCccccc
Confidence 999999999999999999999999999999999999999988765 37799999
Q ss_pred CCCCCcCCCCCcchHHHHHHHhhccChHHHHHHHHhhhc
Q 012150 337 EESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLEND 375 (470)
Q Consensus 337 ~~rDP~~~nA~~SsLWEL~~L~~HYHPsVa~~A~~l~~~ 375 (470)
...||..+|...+.|||-.+|.+||+|.|++-|+.++..
T Consensus 616 ~~~nP~~SN~~tA~l~e~fLlk~hy~P~Vsq~~k~L~~~ 654 (657)
T COG5117 616 IPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQSAKELLKS 654 (657)
T ss_pred CCCCcccCCchhHHHHHHHHHHhhcCHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999998763
No 6
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.6e-17 Score=176.58 Aligned_cols=214 Identities=18% Similarity=0.200 Sum_probs=165.0
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHhhhhhccccCChhhHhhHHHHhhhc------CcchHHHHHHHHHHHHHh----c
Q 012150 141 SKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI------GGVVSVMALSSLFILMTQ----H 210 (470)
Q Consensus 141 ~~~~~awL~~L~~al~~~l~k~vL~~L~k~I~pHl~NP~lL~DFLtd~~d~------gg~isllAL~~LF~L~~~----~ 210 (470)
+..+..|+.+|+...-. ++..+|+||++ +.|++|++++.|++...-.+ +...+++|++++|.|++. .
T Consensus 459 kiVFtiYFrILkn~~~t-ll~~vlEGlak--f~h~invef~~dll~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~l 535 (704)
T KOG2153|consen 459 KIVFTIYFRILKNDRYT-LLGAVLEGLAK--FAHLINVEFLGDLLKVLKELLEDIELSYREALLCVQTAFCILSGQGEKL 535 (704)
T ss_pred HHHHHHHHHHHhcchhh-HHHHHHhhHHH--HhhhccHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceee
Confidence 34455788888866555 99999999999 99999999999998754432 345789999999999986 4
Q ss_pred CCCcchHHHHHHHhhCcCcccch--hHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 012150 211 GLEYPNFYEKLYALLVPSIFMAK--HRAKFFELLDSCL-RSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLR 287 (470)
Q Consensus 211 Nld~prFY~~LY~LLdP~l~~sk--~ra~Fl~LL~~~L-ks~~Lp~~rVAAFIKRLlrlaL~aPp~~~~~iL~lI~nLLk 287 (470)
|+|+..||..||+++-|--.... --.+.++++|..+ ++.. |..+|.+|++||+.+++|.-+...+ .+...+.
T Consensus 536 niD~~~fv~~lY~~l~~~~~~~~~~~~~~ilr~~d~~~~k~r~-~v~~~~~~~~~Ll~~~~h~~~~s~~----~s~~~~~ 610 (704)
T KOG2153|consen 536 NIDLGKFVDHLYKMLFPMNLGPDDDGFAIILRLLDPLLIKIRK-PVVNVITKMERLLKCSLHVFFNSKL----ISKYRDI 610 (704)
T ss_pred ccCHHHHHHHHHHHhcccccCCCcchHHHHHHHhhHhhhhhhh-hHHHHHHHHHHHHHHHHHHhhcccc----hHHHHHH
Confidence 88999999999997766333222 2357899999875 5565 8888999999999999998776555 4555566
Q ss_pred hCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHHHHHHHhhccChHHHH
Q 012150 288 RHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSR 367 (470)
Q Consensus 288 rhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HYHPsVa~ 367 (470)
..+.|..|+.++ -|++|++....|||+.+++ |||.|+.
T Consensus 611 ~fsk~~~~~~~~----------------------------------------~pe~~s~a~~al~e~~l~r--y~~~~~~ 648 (704)
T KOG2153|consen 611 EFSKRLNLLDSE----------------------------------------TPEYCSIASLALFEKLLLR--YHPISRL 648 (704)
T ss_pred Hhhhhhhhhhcc----------------------------------------CccccccccHHHHHHHHHh--cchHHHH
Confidence 666666555432 1999999999999999999 9999999
Q ss_pred HHHHhhhcccccccccccccCcCCCCcHHHHHHHHHhcc
Q 012150 368 FVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRR 406 (470)
Q Consensus 368 ~A~~l~~~~~i~~k~~~y~~edflD~sy~~lld~e~~k~ 406 (470)
||..+.-|.+.- +..-.--++...|-+.+++..+-..
T Consensus 649 ~a~~~~~G~~~~--~~~a~~p~~s~~sa~~L~~~~~~~~ 685 (704)
T KOG2153|consen 649 MASEIAIGVGAT--GEGALPPELSNLSAAELFEQDLLEM 685 (704)
T ss_pred HHHHHhhcCCcc--CcCCCCccccCchHHHHhhhHHHHh
Confidence 999998888762 1122223455578888999877655
No 7
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=1.6e-05 Score=87.02 Aligned_cols=146 Identities=24% Similarity=0.312 Sum_probs=108.3
Q ss_pred HHHHHHHHhcCCC--cchHHHHHHHhhCcCcccch--------hHHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHhcc
Q 012150 201 SSLFILMTQHGLE--YPNFYEKLYALLVPSIFMAK--------HRAKFFELL-DSCLRSPLLPAYLAAAFVKKLSRLSIL 269 (470)
Q Consensus 201 ~~LF~L~~~~Nld--~prFY~~LY~LLdP~l~~sk--------~ra~Fl~LL-~~~Lks~~Lp~~rVAAFIKRLlrlaL~ 269 (470)
.++|.+|-..+++ -+.||.- -+++||.+.... .+-|++.+. ..+..+.....+|..+|-||+.-++.+
T Consensus 544 ~~lY~~l~~~~~~~~~~~~~~i-lr~~d~~~~k~r~~v~~~~~~~~~Ll~~~~h~~~~s~~~s~~~~~~fsk~~~~~~~~ 622 (704)
T KOG2153|consen 544 DHLYKMLFPMNLGPDDDGFAII-LRLLDPLLIKIRKPVVNVITKMERLLKCSLHVFFNSKLISKYRDIEFSKRLNLLDSE 622 (704)
T ss_pred HHHHHHhcccccCCCcchHHHH-HHHhhHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhhhhhhhhhcc
Confidence 4455555444444 3345543 345565432211 122333322 334467778999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcc
Q 012150 270 VPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRS 349 (470)
Q Consensus 270 aPp~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~S 349 (470)
.|....++.++|+-.+|-|++.+-.++..+.. .|.+.|.+...+|+.+|...+
T Consensus 623 ~pe~~s~a~~al~e~~l~ry~~~~~~~a~~~~---------------------------~G~~~~~~~a~~p~~s~~sa~ 675 (704)
T KOG2153|consen 623 TPEYCSIASLALFEKLLLRYHPISRLMASEIA---------------------------IGVGATGEGALPPELSNLSAA 675 (704)
T ss_pred CccccccccHHHHHHHHHhcchHHHHHHHHHh---------------------------hcCCccCcCCCCccccCchHH
Confidence 99999999999999999998887777765543 477899999999999999999
Q ss_pred hHHHHHHHhhccChHHHHHHHHhhh
Q 012150 350 SLWEIDTLRHHYCPPVSRFVLSLEN 374 (470)
Q Consensus 350 sLWEL~~L~~HYHPsVa~~A~~l~~ 374 (470)
.|||-.++..||+|+|..-++.+..
T Consensus 676 ~L~~~~~~~~~~~P~v~~~~kql~~ 700 (704)
T KOG2153|consen 676 ELFEQDLLEMHYNPTVPLSLKQLYK 700 (704)
T ss_pred HHhhhHHHHhccCCCCCchHHHHHH
Confidence 9999999999999999988777654
No 8
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.08 E-value=27 Score=40.49 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHhcCCC-cchHHHHHHH-hhCc-CcccchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCC
Q 012150 195 VSVMALSSLFILMTQHGLE-YPNFYEKLYA-LLVP-SIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVP 271 (470)
Q Consensus 195 isllAL~~LF~L~~~~Nld-~prFY~~LY~-LLdP-~l~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFIKRLlrlaL~aP 271 (470)
+.=-||...+.|++.||++ --.|..+=.. --+. .--.-+||..+.+-+..|-. ..|. ..|.-|-=|+-----..
T Consensus 333 vr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav--~Fp~-~aatvV~~ll~fisD~N 409 (948)
T KOG1058|consen 333 VRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV--KFPE-VAATVVSLLLDFISDSN 409 (948)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh--cChH-HHHHHHHHHHHHhccCC
Confidence 5556777778887777763 2233333222 1111 11123455555554444311 1121 12222222333223355
Q ss_pred hhHHHHHHHHHHHHHHhCccccccc
Q 012150 272 PSGALVIMALIHNLLRRHPSINCLL 296 (470)
Q Consensus 272 p~~~~~iL~lI~nLLkrhP~l~~Ll 296 (470)
+.++.++|.||++.+.+.|+++..|
T Consensus 410 ~~aas~vl~FvrE~iek~p~Lr~~i 434 (948)
T KOG1058|consen 410 EAAASDVLMFVREAIEKFPNLRASI 434 (948)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHH
Confidence 7788999999999999999887654
No 9
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=49.44 E-value=2.7e+02 Score=28.15 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=77.0
Q ss_pred hhHhhHHHHhhhcCcchHHHHHHHHHHHHHhcCCCcc---hHHHHHHHhhCcCcccchhHHHHHHHHHHHhcCCCCh-HH
Q 012150 179 IMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYP---NFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLP-AY 254 (470)
Q Consensus 179 ~lL~DFLtd~~d~gg~isllAL~~LF~L~~~~Nld~p---rFY~~LY~LLdP~l~~sk~ra~Fl~LL~~~Lks~~Lp-~~ 254 (470)
..|.+|+.+.++-.. ...-||.|+..|+...+.... ..-+.++.-.++.....+.|-..++++...+..-.-. ..
T Consensus 41 ~~L~~F~~~rl~D~~-~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~ 119 (262)
T PF14500_consen 41 QVLLDFFCSRLDDHA-CVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS 119 (262)
T ss_pred HHHHHHHHHHhccHh-hHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 345568887664222 234458888888876666444 5556666666777777888999999998888652201 12
Q ss_pred HHHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhCc
Q 012150 255 LAAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRHP 290 (470)
Q Consensus 255 rVAAFIKRLlrlaL~-aPp~~~~~iL~lI~nLLkrhP 290 (470)
.-..|++.+++++=. --|-..+.+.-++..+++..+
T Consensus 120 ~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 120 MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 235799999997754 457788888888888888888
No 10
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=36.98 E-value=97 Score=28.82 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=40.1
Q ss_pred cchHHHHHHHhhCcCcccchhHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHhccCC--hhHHHHHHHHHHHHHHh
Q 012150 214 YPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSP---LLPAYLAAAFVKKLSRLSILVP--PSGALVIMALIHNLLRR 288 (470)
Q Consensus 214 ~prFY~~LY~LLdP~l~~sk~ra~Fl~LL~~~Lks~---~Lp~~rVAAFIKRLlrlaL~aP--p~~~~~iL~lI~nLLkr 288 (470)
+..+.+.|++.|...--..-...-..-|-+.|-... .+....+.-.+.++.+.++... +.....++..+..++++
T Consensus 65 ~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 65 GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPH 144 (165)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 466778888877432111111111222222222211 1111223334444444444433 46777899999999999
Q ss_pred Cccc
Q 012150 289 HPSI 292 (470)
Q Consensus 289 hP~l 292 (470)
||+.
T Consensus 145 ~ptt 148 (165)
T PF08167_consen 145 HPTT 148 (165)
T ss_pred CCcc
Confidence 9964
No 11
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.57 E-value=8.2e+02 Score=29.21 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHhccCChhHHHHHH
Q 012150 232 AKHRAKFFELLDSCLRSP----LLPAYLAAAFVKKLSRLSILVPPSGALVIM 279 (470)
Q Consensus 232 sk~ra~Fl~LL~~~Lks~----~Lp~~rVAAFIKRLlrlaL~aPp~~~~~iL 279 (470)
.+|-+|+..||-.|...+ --+.+||+-++--|--+...++|+-...+.
T Consensus 253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~ 304 (970)
T KOG0946|consen 253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSIT 304 (970)
T ss_pred cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 456677777777777666 457788888887777777666665444433
No 12
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=26.41 E-value=1.3e+02 Score=22.31 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHhCc
Q 012150 256 AAAFVKKLSRLSIL--VPPSGALVIMALIHNLLRRHP 290 (470)
Q Consensus 256 VAAFIKRLlrlaL~--aPp~~~~~iL~lI~nLLkrhP 290 (470)
+..=|++|+.++=. .+++-+-..+.-...|+.+|-
T Consensus 3 il~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 3 ILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44558899999977 777889999999999999884
No 13
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=25.72 E-value=66 Score=26.25 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=30.6
Q ss_pred cchHHHHHHHhhccChHHHHHHHHhhhcccccccccccccC
Q 012150 348 RSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVK 388 (470)
Q Consensus 348 ~SsLWEL~~L~~HYHPsVa~~A~~l~~~~~i~~k~~~y~~e 388 (470)
....||- +|++||+-.-...++.|..|..++ |...|.-+
T Consensus 23 ~~~yWe~-LLr~~ye~~q~e~~~~LGKGKR~R-KqV~y~~~ 61 (66)
T PF06465_consen 23 DPNYWEK-LLRHRYEQQQEEEEKALGKGKRSR-KQVNYAEE 61 (66)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHhccccccc-cccccccc
Confidence 4578995 679999999999999999998876 44556544
No 14
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=24.02 E-value=1.1e+02 Score=27.52 Aligned_cols=65 Identities=22% Similarity=0.374 Sum_probs=38.5
Q ss_pred HHHHHHHHhc-cCCCChhhHHHHHHHhhhhh---ccccCC-h--------hhHhhHHHHhhhcC--cchHHHHHHHHHHH
Q 012150 142 KFTKAWITFL-RLPLPVDIYKEVLVTLHRAV---IPFLSN-P--------IMLCDFLTRSYDIG--GVVSVMALSSLFIL 206 (470)
Q Consensus 142 ~~~~awL~~L-~~al~~~l~k~vL~~L~k~I---~pHl~N-P--------~lL~DFLtd~~d~g--g~isllAL~~LF~L 206 (470)
.|....+... -..++...+..+|..++..+ .|++.+ | +++..||...||.+ |.++++++...+.+
T Consensus 46 ~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 46 AFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 4444444444 23356667777777777211 677665 2 58888999999976 67888887666554
No 15
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.83 E-value=5.9e+02 Score=28.10 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=64.1
Q ss_pred hhccccCChhhHhhHHHHhhhcCcchHHHHHHHHHHHHHhcCCCcchHHHHHHHhhCcCcccch--hHHHHHHHHHHHhc
Q 012150 170 AVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAK--HRAKFFELLDSCLR 247 (470)
Q Consensus 170 ~I~pHl~NP~lL~DFLtd~~d~gg~isllAL~~LF~L~~~~Nld~prFY~~LY~LLdP~l~~sk--~ra~Fl~LL~~~Lk 247 (470)
.++-|+.+| .+||||-.+..... ...=.++.+.+.. .++-.+|.++|+|..-... .-+.||.-+-+.-.
T Consensus 25 ~llkHI~~~-~ImDlLLklIs~d~---~~~~~~ilewL~~-----q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 25 NLLKHIDTP-AIMDLLLKLISTDK---PESPTGILEWLAE-----QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred HHHHhcCCc-HHHHHHHHHHccCc---ccchHHHHHHHHH-----hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 345577665 47899876554321 1111233444433 5677888888887654332 23455553332222
Q ss_pred CCC-------ChHHH-----HHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhCc
Q 012150 248 SPL-------LPAYL-----AAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRHP 290 (470)
Q Consensus 248 s~~-------Lp~~r-----VAAFIKRLlrlaL~-aPp~~~~~iL~lI~nLLkrhP 290 (470)
... -|..+ -..+|.+|+..+|. ..-+.++.++.++-+|+++..
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknn 151 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNN 151 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc
Confidence 111 12222 24689999999995 336778888888999996653
No 16
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=22.21 E-value=74 Score=25.93 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.0
Q ss_pred HHHHhhccChHHHHHHHHhhh
Q 012150 354 IDTLRHHYCPPVSRFVLSLEN 374 (470)
Q Consensus 354 L~~L~~HYHPsVa~~A~~l~~ 374 (470)
+..|++|..|.|+.+|+.|..
T Consensus 49 V~~Lrkh~~~~i~~~A~~Lv~ 69 (76)
T cd00183 49 VNSLRKHSNEKIRKLAKALIK 69 (76)
T ss_pred HHHHHcCCcHHHHHHHHHHHH
Confidence 678999999999999998865
No 17
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=21.70 E-value=1.4e+02 Score=27.20 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 012150 251 LPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLR 287 (470)
Q Consensus 251 Lp~~rVAAFIKRLlrlaL~aPp~~~~~iL~lI~nLLk 287 (470)
+|.--+..|++|+.+-+ ++++...+.++..|..|.+
T Consensus 49 ~p~i~i~~fl~ri~~~~-~~s~~~~i~aliYl~Rl~~ 84 (149)
T PF08613_consen 49 VPSISIRDFLSRILKYT-QCSPECLILALIYLDRLRQ 84 (149)
T ss_dssp --SS-HHHHHHHHHHHT-T--HHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHH
Confidence 46667999999999887 4566667777777888888
No 18
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=21.38 E-value=6.6e+02 Score=23.28 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=70.8
Q ss_pred CChhhHHHHHHHhhhhhccccC--ChhhHhhHHHHhhhcCcchHHHHHHHHHHHHHh--cCCCcchHHHHHHHhhCcCc-
Q 012150 155 LPVDIYKEVLVTLHRAVIPFLS--NPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQ--HGLEYPNFYEKLYALLVPSI- 229 (470)
Q Consensus 155 l~~~l~k~vL~~L~k~I~pHl~--NP~lL~DFLtd~~d~gg~isllAL~~LF~L~~~--~Nld~prFY~~LY~LLdP~l- 229 (470)
-...+.+..|..|.+-|.-.+. .+.++..|+.-.-|....++-.|...+.++... -+..+..|..-++.+-.+.-
T Consensus 37 ~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~ 116 (178)
T PF12717_consen 37 EDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEH 116 (178)
T ss_pred CCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccc
Confidence 4567888888888876655554 445667788766677777888888888888877 34445555555555444321
Q ss_pred -----ccchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 012150 230 -----FMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLS 267 (470)
Q Consensus 230 -----~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFIKRLlrla 267 (470)
.....|..+++.+..+++.+......+.-.+.|++...
T Consensus 117 ~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 117 PVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred ccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 23345556666666666644335555555555555544
No 19
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=20.78 E-value=4.7e+02 Score=30.25 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHhhCcCcccchhHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHhccCChh
Q 012150 196 SVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLR--SPLLPAYLAAAFVKKLSRLSILVPPS 273 (470)
Q Consensus 196 sllAL~~LF~L~~~~Nld~prFY~~LY~LLdP~l~~sk~ra~Fl~LL~~~Lk--s~~Lp~~rVAAFIKRLlrlaL~aPp~ 273 (470)
++.+...+|+=+++---.+..--..|..+++.+-| ..-|++++.+.|. .......||..|+||..-.-+.--|.
T Consensus 9 ~~~s~~~if~k~Q~s~aGhrk~~a~l~~~~t~~~f----~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpe 84 (885)
T COG5218 9 SLESMQLIFNKIQQSSAGHRKSLAELMEMLTAHEF----SEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPE 84 (885)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh----HHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChh
Confidence 44555666665555433333344445555544333 2457888877664 33446678999999888866666677
Q ss_pred HHHHHHHHHHHHHH
Q 012150 274 GALVIMALIHNLLR 287 (470)
Q Consensus 274 ~~~~iL~lI~nLLk 287 (470)
+.=.+-++++.+|+
T Consensus 85 g~~~V~~~~~h~lR 98 (885)
T COG5218 85 GEELVAGTFYHLLR 98 (885)
T ss_pred hhHHHHHHHHHHHh
Confidence 67777777777775
No 20
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=20.67 E-value=2.3e+02 Score=30.43 Aligned_cols=63 Identities=22% Similarity=0.432 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccc
Q 012150 234 HRAKFFELLDSCLRSPLLPA---YLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLL 296 (470)
Q Consensus 234 ~ra~Fl~LL~~~Lks~~Lp~---~rVAAFIKRLlrlaL~aPp~~~~~iL~lI~nLLkrhP~l~~Ll 296 (470)
|-.....++.+++.+..... +.-..|++||+.+--.--|.---.+..+++++..++++++..|
T Consensus 106 HL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I 171 (409)
T PF01603_consen 106 HLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFI 171 (409)
T ss_dssp HHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred hHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44556677777877755444 6778899999988877777777777778888888888776555
Done!