Query 012150
Match_columns 470
No_of_seqs 244 out of 576
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3grl_A General vesicular trans 34.0 1E+02 0.0035 33.8 8.4 141 142-291 60-245 (651)
2 3dad_A FH1/FH2 domain-containi 24.2 2.3E+02 0.0078 28.6 8.4 131 155-290 130-289 (339)
3 4gof_A Small glutamine-rich te 19.2 52 0.0018 24.5 1.9 27 180-206 8-43 (52)
4 3hts_B Heat shock transcriptio 17.7 1.4E+02 0.0049 24.8 4.6 47 213-264 11-71 (102)
5 2pmi_B PHO85 cyclin PHO80, ami 16.6 1E+02 0.0036 30.5 3.9 43 249-292 70-112 (293)
6 2ldu_A Heat shock factor prote 13.3 3.2E+02 0.011 23.3 5.7 49 211-264 14-76 (125)
7 3si5_X Protein CASC5; BUBR1-bl 12.6 67 0.0023 20.2 0.8 8 257-264 14-21 (24)
8 4asv_A Small glutamine-rich te 12.1 1.1E+02 0.0036 25.4 2.2 26 181-206 26-60 (92)
9 3odn_A Dally-like protein; alp 11.8 5.3E+02 0.018 27.4 7.9 74 140-229 81-159 (506)
10 2lxb_A Small glutamine-rich te 11.3 1.2E+02 0.0041 24.1 2.2 27 180-206 13-48 (74)
No 1
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=34.03 E-value=1e+02 Score=33.83 Aligned_cols=141 Identities=20% Similarity=0.139 Sum_probs=78.2
Q ss_pred HHHHHHHHhccCC-CChhhHHHHHHHhhhhhccccCC---------hhhHhhHHHHhhhcCcchHHHHHHHHHHHHHhcC
Q 012150 142 KFTKAWITFLRLP-LPVDIYKEVLVTLHRAVIPFLSN---------PIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHG 211 (470)
Q Consensus 142 ~~~~awL~~L~~a-l~~~l~k~vL~~L~k~I~pHl~N---------P~lL~DFLtd~~d~gg~isllAL~~LF~L~~~~N 211 (470)
.-....+..|++. -..++.+.+|++|.-..-+.-.. +.-++.+++|.+=.. --.+..|+.++
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~----~~~i~~Ll~lL---- 131 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQ----QENVTLLLSLL---- 131 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHS----THHHHHHHHHT----
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcC----CccHHHHHHHh----
Confidence 3445677778765 56799999999997522221111 112344444433110 01233344443
Q ss_pred CCcchHHHHHHH--hhC------cC-----cccc------------hhHHHHHH---HHHHHhcCCCChHHHHHHH---H
Q 012150 212 LEYPNFYEKLYA--LLV------PS-----IFMA------------KHRAKFFE---LLDSCLRSPLLPAYLAAAF---V 260 (470)
Q Consensus 212 ld~prFY~~LY~--LLd------P~-----l~~s------------k~ra~Fl~---LL~~~Lks~~Lp~~rVAAF---I 260 (470)
+.++||.++|+ +|. |. ++.+ ..|..+-+ ++-..|..++-..+-+.|| .
T Consensus 132 -~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaF 210 (651)
T 3grl_A 132 -EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAF 210 (651)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred -cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccH
Confidence 56889999998 442 11 1100 01111111 2234455666688899999 8
Q ss_pred HHHHHHhccCCh--hHH--HHHHHHHHHHHHhCcc
Q 012150 261 KKLSRLSILVPP--SGA--LVIMALIHNLLRRHPS 291 (470)
Q Consensus 261 KRLlrlaL~aPp--~~~--~~iL~lI~nLLkrhP~ 291 (470)
-||..+--.-.. +++ --||.++.||++-+|.
T Consensus 211 e~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 211 ERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp HHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 999988755333 223 3689999999988763
No 2
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=24.24 E-value=2.3e+02 Score=28.59 Aligned_cols=131 Identities=17% Similarity=0.100 Sum_probs=69.9
Q ss_pred CChhhHHHHHHHhhhhhccccCChhhHhhHHHH-----hhhc----CcchHHHHHHHHHHHHHh---c-CC-CcchHHHH
Q 012150 155 LPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTR-----SYDI----GGVVSVMALSSLFILMTQ---H-GL-EYPNFYEK 220 (470)
Q Consensus 155 l~~~l~k~vL~~L~k~I~pHl~NP~lL~DFLtd-----~~d~----gg~isllAL~~LF~L~~~---~-Nl-d~prFY~~ 220 (470)
-..+-.+.+|-.|.+. | -.++.+.-.|... +.++ .|.+--.+|..+-+||.. . ++ ..+.|-++
T Consensus 130 ~~~~~lr~aLfsLk~~-~--q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ 206 (339)
T 3dad_A 130 SSGPELRRSLFSLKQI-F--QEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQW 206 (339)
T ss_dssp CCHHHHHHHHHHHHHH-H--HTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHH
T ss_pred CCcHHHHHHHHHHHHH-h--hcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHH
Confidence 3455566677666651 1 1455555555431 1111 133444567777777643 1 22 27899999
Q ss_pred HHHhhCcCcccchhHHHHHHHHHHHhcCCCChHHHHHHHHH------------HHHHHhc---cCChhHHHHHHHHHHHH
Q 012150 221 LYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVK------------KLSRLSI---LVPPSGALVIMALIHNL 285 (470)
Q Consensus 221 LY~LLdP~l~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFIK------------RLlrlaL---~aPp~~~~~iL~lI~nL 285 (470)
||++++... ...-..-+.||..+...+.-....|..=|+ +|..+-- .+.+...+-++.+|..+
T Consensus 207 lyslv~s~~--~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 207 LYTLCASLS--RLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKT 284 (339)
T ss_dssp HHHGGGCSC--HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcc--HHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 999998421 111122366666665443223334433333 3333322 34556667778888888
Q ss_pred HHhCc
Q 012150 286 LRRHP 290 (470)
Q Consensus 286 LkrhP 290 (470)
|..-|
T Consensus 285 L~~ap 289 (339)
T 3dad_A 285 LAALP 289 (339)
T ss_dssp HHHCS
T ss_pred HhcCC
Confidence 77655
No 3
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=19.17 E-value=52 Score=24.48 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred hHhhHHHHhhhcCc---------chHHHHHHHHHHH
Q 012150 180 MLCDFLTRSYDIGG---------VVSVMALSSLFIL 206 (470)
Q Consensus 180 lL~DFLtd~~d~gg---------~isllAL~~LF~L 206 (470)
.+.|||..+.+.|. -++++||...|.+
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 35789988887663 2789999998865
No 4
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=17.73 E-value=1.4e+02 Score=24.82 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=28.7
Q ss_pred CcchHHHHHHHhh-CcCc---c---------cchhHHHHHH-HHHHHhcCCCChHHHHHHHHHHHH
Q 012150 213 EYPNFYEKLYALL-VPSI---F---------MAKHRAKFFE-LLDSCLRSPLLPAYLAAAFVKKLS 264 (470)
Q Consensus 213 d~prFY~~LY~LL-dP~l---~---------~sk~ra~Fl~-LL~~~Lks~~Lp~~rVAAFIKRLl 264 (470)
..|.|..+||.|| ||.. . .......|-+ +|-++.+... .++|+..|=
T Consensus 11 ~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~n-----fsSFvRQLN 71 (102)
T 3hts_B 11 ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSN-----FASFVRQLN 71 (102)
T ss_dssp CSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCC-----HHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCc-----HHHHHHHhh
Confidence 4678999999988 4532 1 1123455654 5556665544 677776653
No 5
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=16.57 E-value=1e+02 Score=30.47 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccc
Q 012150 249 PLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSI 292 (470)
Q Consensus 249 ~~Lp~~rVAAFIKRLlrlaL~aPp~~~~~iL~lI~nLLkrhP~l 292 (470)
...|.--+..|+.||.+-|-. ++...+.+|..|..|..++|..
T Consensus 70 ~~~P~ISI~~Yl~RI~k~t~l-s~~~ll~ALvYLdRL~~~~p~~ 112 (293)
T 2pmi_B 70 KIPPNISIFNYFIRLTKFSSL-EHCVLMTSLYYIDLLQTVYPDF 112 (293)
T ss_dssp SSCCSSCHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhhCCCC
Confidence 335666789999999997754 5666777777888898888854
No 6
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=13.31 E-value=3.2e+02 Score=23.34 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=30.6
Q ss_pred CCCcchHHHHHHHhh-CcCcc------------cchhHHHHHH-HHHHHhcCCCChHHHHHHHHHHHH
Q 012150 211 GLEYPNFYEKLYALL-VPSIF------------MAKHRAKFFE-LLDSCLRSPLLPAYLAAAFVKKLS 264 (470)
Q Consensus 211 Nld~prFY~~LY~LL-dP~l~------------~sk~ra~Fl~-LL~~~Lks~~Lp~~rVAAFIKRLl 264 (470)
....+.|..+||.|| ||+.- .......|-+ +|-++.+... .++|+..|-
T Consensus 14 ~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~n-----fsSFvRQLN 76 (125)
T 2ldu_A 14 PSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNN-----MASFVRQLN 76 (125)
T ss_dssp SCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCC-----HHHHHHHHH
T ss_pred CCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCc-----HHHHHHHhc
Confidence 345789999999977 55421 1224455654 5666666554 677776553
No 7
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=12.61 E-value=67 Score=20.16 Aligned_cols=8 Identities=38% Similarity=0.812 Sum_probs=5.4
Q ss_pred HHHHHHHH
Q 012150 257 AAFVKKLS 264 (470)
Q Consensus 257 AAFIKRLl 264 (470)
--|||||-
T Consensus 14 ndFIKRLK 21 (24)
T 3si5_X 14 NDFIKRLK 21 (26)
T ss_pred HHHHHHHh
Confidence 35888873
No 8
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=12.15 E-value=1.1e+02 Score=25.44 Aligned_cols=26 Identities=12% Similarity=0.246 Sum_probs=19.2
Q ss_pred HhhHHHHhhhcCc---------chHHHHHHHHHHH
Q 012150 181 LCDFLTRSYDIGG---------VVSVMALSSLFIL 206 (470)
Q Consensus 181 L~DFLtd~~d~gg---------~isllAL~~LF~L 206 (470)
+.|||..+...|. -++++||...|.+
T Consensus 26 IIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~V 60 (92)
T 4asv_A 26 IVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 60 (92)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 4678888777653 2789999988865
No 9
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=11.80 E-value=5.3e+02 Score=27.38 Aligned_cols=74 Identities=15% Similarity=0.379 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHhhhhhcccc--CChhhHhhHHHHhhh--cCcchHHH-HHHHHHHHHHhcCCCc
Q 012150 140 KSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFL--SNPIMLCDFLTRSYD--IGGVVSVM-ALSSLFILMTQHGLEY 214 (470)
Q Consensus 140 k~~~~~awL~~L~~al~~~l~k~vL~~L~k~I~pHl--~NP~lL~DFLtd~~d--~gg~isll-AL~~LF~L~~~~Nld~ 214 (470)
-++|.+.+...|+. -+..|..|+.+....| .|-.++.||++++.. .|+.+.|. +|+-.|
T Consensus 81 ~~~F~e~F~~LL~~------Se~~l~~mF~~tYg~ly~qn~~~f~~LF~~L~~Yy~g~~v~Lee~v~~Ff---------- 144 (506)
T 3odn_A 81 ATKFKDIFTALLKE------SRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLLEVMDKFF---------- 144 (506)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHTTHHHHHTHHHHHHHHHHHHHHHHHSCSCHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH----------
Confidence 34566666666652 3445555555555444 477788888887543 56655543 232222
Q ss_pred chHHHHHHHhhCcCc
Q 012150 215 PNFYEKLYALLVPSI 229 (470)
Q Consensus 215 prFY~~LY~LLdP~l 229 (470)
++.|.++|.+|+|..
T Consensus 145 ~~Lf~~~f~llnp~~ 159 (506)
T 3odn_A 145 NTLYQKMFTVLNTQY 159 (506)
T ss_dssp HHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHcCCCC
Confidence 333444555677765
No 10
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=11.28 E-value=1.2e+02 Score=24.09 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=20.0
Q ss_pred hHhhHHHHhhhcCc---------chHHHHHHHHHHH
Q 012150 180 MLCDFLTRSYDIGG---------VVSVMALSSLFIL 206 (470)
Q Consensus 180 lL~DFLtd~~d~gg---------~isllAL~~LF~L 206 (470)
.+.|||..+...|. -++++||...|.+
T Consensus 13 sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v 48 (74)
T 2lxb_A 13 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 48 (74)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 35678888877653 2789999988865
Done!