Query 012150
Match_columns 470
No_of_seqs 244 out of 576
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 03:45:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012150.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012150hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wiga1 g.39.1.3 (A:1-32) Acti 27.7 4.2 0.0003 25.6 -0.7 8 358-365 24-31 (32)
2 d1zoqc1 a.153.1.1 (C:2065-2111 22.8 50 0.0036 22.1 4.0 34 146-186 5-38 (47)
3 d1eg3a1 a.39.1.7 (A:85-209) Dy 18.8 63 0.0046 26.1 4.8 36 172-207 81-122 (125)
4 d2gdwa1 a.28.1.2 (A:8-83) Pept 14.5 69 0.0051 22.8 3.6 28 187-215 30-57 (76)
5 d2htsa_ a.4.5.22 (A:) Heat-sho 10.9 1.4E+02 0.01 22.3 4.6 14 215-228 3-17 (92)
6 d1eo0a_ a.48.3.1 (A:) Transcri 9.1 59 0.0043 24.0 1.5 21 354-374 50-70 (77)
7 d2jaka1 a.118.1.20 (A:30-372) 8.9 2.9E+02 0.021 25.3 6.9 20 153-172 56-75 (343)
8 d1dv5a_ a.28.1.3 (A:) apo-D-al 6.1 1.5E+02 0.011 20.9 2.6 30 186-215 28-57 (80)
9 d2jm6b1 f.1.4.1 (B:147-308) EA 5.8 6.2E+02 0.045 19.9 9.7 88 200-289 45-136 (162)
10 d1w53a_ a.186.1.2 (A:) Phospho 5.8 3.7E+02 0.027 19.8 4.8 72 139-212 7-82 (84)
No 1
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.68 E-value=4.2 Score=25.58 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=5.9
Q ss_pred hhccChHH
Q 012150 358 RHHYCPPV 365 (470)
Q Consensus 358 ~~HYHPsV 365 (470)
-+||||+.
T Consensus 24 ~khYHP~C 31 (32)
T d1wiga1 24 EKHYHPSC 31 (32)
T ss_dssp SCCBCTTT
T ss_pred ccccCCCC
Confidence 37899874
No 2
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.78 E-value=50 Score=22.06 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=28.2
Q ss_pred HHHHhccCCCChhhHHHHHHHhhhhhccccCChhhHhhHHH
Q 012150 146 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 186 (470)
Q Consensus 146 awL~~L~~al~~~l~k~vL~~L~k~I~pHl~NP~lL~DFLt 186 (470)
-.+..||.+-++.+-.+||.+|-. ||.+++-|+.
T Consensus 5 ~Ll~tLrsP~sP~QQqQvL~ILks-------NP~lmaaFIk 38 (47)
T d1zoqc1 5 DLLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 357788888888899999988875 9999998874
No 3
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.85 E-value=63 Score=26.06 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=26.3
Q ss_pred ccccCC----hhhHhhHHHHhhhcC--cchHHHHHHHHHHHH
Q 012150 172 IPFLSN----PIMLCDFLTRSYDIG--GVVSVMALSSLFILM 207 (470)
Q Consensus 172 ~pHl~N----P~lL~DFLtd~~d~g--g~isllAL~~LF~L~ 207 (470)
.|+..| ..++..||...||.| |.++++++...+.++
T Consensus 81 ~~~~v~vp~~~dl~LN~LlnvYD~~rtG~i~vls~KvaL~~L 122 (125)
T d1eg3a1 81 HNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISL 122 (125)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHT
T ss_pred CcccCChHHHHHHHHHHHHHHhCCCCCCeeeehHHHHHHHHH
Confidence 667777 345556999999986 678888887666554
No 4
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=14.50 E-value=69 Score=22.76 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=20.9
Q ss_pred HhhhcCcchHHHHHHHHHHHHHhcCCCcc
Q 012150 187 RSYDIGGVVSVMALSSLFILMTQHGLEYP 215 (470)
Q Consensus 187 d~~d~gg~isllAL~~LF~L~~~~Nld~p 215 (470)
+.++.|| .|++|+..+-.|-+.+++..+
T Consensus 30 ~f~~lG~-dSl~a~~l~~~i~~~~~~~l~ 57 (76)
T d2gdwa1 30 NFFQIGG-HSLKAMAVAAQVHREYQVELP 57 (76)
T ss_dssp TSSTTTC-TTHHHHHHHHHHHHTTSSCCT
T ss_pred CHHHcCC-ChHHHHHHHHHHHHHHCCCCC
Confidence 3446665 799999999999888776544
No 5
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=10.93 E-value=1.4e+02 Score=22.26 Aligned_cols=14 Identities=36% Similarity=0.709 Sum_probs=11.3
Q ss_pred chHHHHHHHhh-CcC
Q 012150 215 PNFYEKLYALL-VPS 228 (470)
Q Consensus 215 prFY~~LY~LL-dP~ 228 (470)
|.|..+||.|| +|+
T Consensus 3 P~F~~kL~~~l~~~~ 17 (92)
T d2htsa_ 3 PAFVNKLWSMVNDKS 17 (92)
T ss_dssp CHHHHHHHHHHHCGG
T ss_pred CChHHHHHHHHcCcC
Confidence 67999999988 553
No 6
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.08 E-value=59 Score=24.02 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=18.0
Q ss_pred HHHHhhccChHHHHHHHHhhh
Q 012150 354 IDTLRHHYCPPVSRFVLSLEN 374 (470)
Q Consensus 354 L~~L~~HYHPsVa~~A~~l~~ 374 (470)
+..|+.|-+|.|+.+|+.|..
T Consensus 50 Vn~LRkh~~~~v~~lAk~Lv~ 70 (77)
T d1eo0a_ 50 VNKFKKSTNVEISKLVKKMIS 70 (77)
T ss_dssp HHHCCSSSCTTHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHH
Confidence 567889999999999998875
No 7
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.91 E-value=2.9e+02 Score=25.30 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=13.3
Q ss_pred CCCChhhHHHHHHHhhhhhc
Q 012150 153 LPLPVDIYKEVLVTLHRAVI 172 (470)
Q Consensus 153 ~al~~~l~k~vL~~L~k~I~ 172 (470)
..++.+++..+...+...||
T Consensus 56 ~~l~e~~~~~i~~Mi~~Nif 75 (343)
T d2jaka1 56 NVITEPIYPEVVHMFAVNMF 75 (343)
T ss_dssp SCCCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhC
Confidence 34777777777776666554
No 8
>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]}
Probab=6.06 E-value=1.5e+02 Score=20.89 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=24.2
Q ss_pred HHhhhcCcchHHHHHHHHHHHHHhcCCCcc
Q 012150 186 TRSYDIGGVVSVMALSSLFILMTQHGLEYP 215 (470)
Q Consensus 186 td~~d~gg~isllAL~~LF~L~~~~Nld~p 215 (470)
++.++.||.-|+.++.++..|-..+++.-|
T Consensus 28 ~~l~e~gglDSl~~vel~~~ie~~fgi~i~ 57 (80)
T d1dv5a_ 28 LNLFETGLLDSMGTVQLLLELQSQFGVDAP 57 (80)
T ss_dssp CCSSTTSSCCSHHHHHHHHHHTTTSCCCCC
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 334577888999999999999988888654
No 9
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.82 E-value=6.2e+02 Score=19.91 Aligned_cols=88 Identities=10% Similarity=-0.003 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHhhCcCcccchhHHHHHHHHHHHhcCCCChHHHHHHHH---HHHHHHhccC-ChhHH
Q 012150 200 LSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFV---KKLSRLSILV-PPSGA 275 (470)
Q Consensus 200 L~~LF~L~~~~Nld~prFY~~LY~LLdP~l~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFI---KRLlrlaL~a-Pp~~~ 275 (470)
...|-.+.....-.++.+|+.+.+-|+..- ..-...|.......++....+=-||.|++ =+|+.-|... -+..+
T Consensus 45 ~~~L~~~g~ele~~~~~~f~~~~~~l~i~~--~~~~~~f~~Va~elf~dG~~NWGRIval~~F~~~la~~~~~~~~~~~v 122 (162)
T d2jm6b1 45 LETLRRVGDGVQRNHETAFQGMLRKLDIKN--EGDVKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFI 122 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCSS--TTHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--ccHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHcCChhHH
Confidence 344444444444456777777777543211 12245677777777776555666776644 4555544332 35556
Q ss_pred HHHHHHHHHHHHhC
Q 012150 276 LVIMALIHNLLRRH 289 (470)
Q Consensus 276 ~~iL~lI~nLLkrh 289 (470)
-.++.++...|..|
T Consensus 123 ~~i~~~~~~fl~~~ 136 (162)
T d2jm6b1 123 EPLAETITDVLVRT 136 (162)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777777654
No 10
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=5.80 E-value=3.7e+02 Score=19.80 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhccccCChhhHhhHHHHhhh---cC-cchHHHHHHHHHHHHHhcCC
Q 012150 139 MKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYD---IG-GVVSVMALSSLFILMTQHGL 212 (470)
Q Consensus 139 ~k~~~~~awL~~L~~al~~~l~k~vL~~L~k~I~pHl~NP~lL~DFLtd~~d---~g-g~isllAL~~LF~L~~~~Nl 212 (470)
++.++..+.-.+|...-...++ ....+.|.++-+=+.|+-+.+.=..+.+ .+ ..-...++..|.++|.++++
T Consensus 7 ~~~~Y~~iL~~Yl~~~~E~~Ly--~~~~fsre~iek~IsPEeIV~iHk~~l~el~~~~~e~v~~Sfd~LlEVm~gyG~ 82 (84)
T d1w53a_ 7 IEQRYHQLLSRYIAELTETSLY--QAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYGM 82 (84)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHcCc
Confidence 3444444444444332233444 6678888888888899887777544443 22 23467789999999988764
Done!