BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012151
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 254 bits (648), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 147/477 (30%), Positives = 243/477 (50%), Gaps = 35/477 (7%)
Query: 18 VILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFS------STNYFSCNYPHFDFH 71
V++ P P QGHINP+ LA +L+ +GF +T ++T++N F + F+F
Sbjct: 11 VVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFD-GFTDFNFE 69
Query: 72 SFPDGFSETEAS---VEDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSP-CCLI 127
S PDG + E +DV ++ + P+ + L ++ + + + P CL+
Sbjct: 70 SIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELL------TRLNHSTNVPPVTCLV 123
Query: 128 TDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPVQDHQ-----SLET 182
+D FT A +F+LP ++ + L + ER +P +D LET
Sbjct: 124 SDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLET 183
Query: 183 PVTEFPPL---RVKDIQ--VLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLG 237
V P L R+KDI + T + + F + ++ + ++ N++ +LE +
Sbjct: 184 KVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVIN 243
Query: 238 LAHQKYLSI-PIFPIGPLHKCSPA--SSGSLSSQDYQRS---ISWLDKQTPKSVVYISFG 291
SI PI P+ L K +P SL S ++ + WL+ + P SVVY++FG
Sbjct: 244 ALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFG 303
Query: 292 SVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWA 351
S + + LE AWG+AN + FLW++RP LV G + F + RG I W
Sbjct: 304 STTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI--FSSEFTNEIADRGLIASWC 361
Query: 352 PQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSE 411
PQ +VL HP++GGF TH GWNST ES+C GVPM+C P+ DQ + R++ + W +G+ +
Sbjct: 362 PQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID 421
Query: 412 WKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468
++R E+ + I V+ +G++M+ + M LK+K + R GG S+ +L ++I +L
Sbjct: 422 TNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 131/472 (27%), Positives = 214/472 (45%), Gaps = 35/472 (7%)
Query: 9 RMVPRNGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIH------TDFNFSSTNYFS 62
M N V + PF H P+L L + ++ VT D FS +N F
Sbjct: 7 EMNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFL 66
Query: 63 CNYPHFDFH-SFPDGFSETEASVEDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDS 121
N +++ H P G+ + E + +F A+ ++ ++ ++ A+ K+
Sbjct: 67 PNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAM--------QENFKHVIDEAVAETGKNI 118
Query: 122 SPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRER-AYLPVQDHQSL 180
+ CL+TDAF++F +A + + L T G L ++RE+ V D +S+
Sbjct: 119 T--CLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSI 176
Query: 181 ETPVTEFPPLRVKDI--QVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGL 238
+ + FP L+ D+ V++ +D + + ++ ++ V NS+ +
Sbjct: 177 DV-LPGFPELKASDLPEGVIKDIDVP-FATMLHKMGLELPRANAVAINSFATIHPLIENE 234
Query: 239 AHQKYLSIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINK 298
+ K+ + +GP + +P S D + WLD+ SVVYISFGSV+
Sbjct: 235 LNSKFKLL--LNVGPFNLTTPQRKVS----DEHGCLEWLDQHENSSVVYISFGSVVTPPP 288
Query: 299 DGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLA 358
+A + PF+W R + E LPKGFLE +G IV WAPQ E+L
Sbjct: 289 HELTALAESLEECGFPFIWSFR------GDPKEKLPKGFLERTKTKGKIVAWAPQVEILK 342
Query: 359 HPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSE-WKLERM 417
H +VG F THSGWNS LE + GVPMI +P+ DQ +N +G+ + L +
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKE 402
Query: 418 EIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469
I++A+ M +G MR +I+ LKE + + G+S LI + S
Sbjct: 403 SIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 176/359 (49%), Gaps = 30/359 (8%)
Query: 123 PCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPVQDHQSLET 182
P L+ D F VA +F +P + + F P L E + + L
Sbjct: 111 PTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSC---EFRELTE 167
Query: 183 PVTEFP---PLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLA 239
P+ P P+ KD +++ Y+++ + + G++ N++ +LE +
Sbjct: 168 PLM-LPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKAL 226
Query: 240 HQKYLSIP-IFPIGPLHKCSPASSGSLSSQDYQRS--ISWLDKQTPKSVVYISFGSVIAI 296
+ L P ++P+GPL + G ++ + S + WLD Q SV+Y+SFGS +
Sbjct: 227 QEPGLDKPPVYPVGPL-----VNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTL 281
Query: 297 NKDGFLEIAWGVANSRMPFLWVVR-PGLVSGAEWVEP---------LPKGFLEMLDGRGC 346
+ E+A G+A+S FLWV+R P ++ + + + LP GFLE RG
Sbjct: 282 TCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGF 341
Query: 347 IVK-WAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWR 405
++ WAPQ +VLAHP+ GGF TH GWNSTLES+ G+P+I P +Q +NA +S R
Sbjct: 342 VIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIR 401
Query: 406 VGLH----SEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSL 460
L + + R E+ R ++ +M EG+ +R ++ LKE L+ G+S ++L
Sbjct: 402 AALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 119/435 (27%), Positives = 200/435 (45%), Gaps = 38/435 (8%)
Query: 44 FSVTIIHTDFNFSSTNYFSCNYPHFDF-HSFPDGFSETEASVEDVAVFFTAINGKCIMPF 102
FS + + S + CN +D P+G+ ED+ +F A
Sbjct: 43 FSTSQSNASIFHDSMHTMQCNIKSYDISDGVPEGYVFAGRPQEDIELFTRAAP------- 95
Query: 103 RDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTA 162
+ + ++ + A+ + S CL+ DAF +F +AA+ + + T G +
Sbjct: 96 -ESFRQGMVMAVAETGRPVS--CLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVY 152
Query: 163 YPILRERAYLPVQDHQSLETPVTEFPP----LRVKDIQVLETMDQENVY--RFVSAIDTQ 216
+RE+ + V Q E + F P +R +D+Q N R + +
Sbjct: 153 IDEIREK--IGVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQV 210
Query: 217 IMASSGVIWNSYRDLEQA---GLGLAHQKYLSIPIFPIGPLHKCSPASSGSLSSQDYQRS 273
+ ++ V NS+ +L+ + L + YL+I F + P ++G L
Sbjct: 211 LPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPFNLITPPPVVPNTTGCLQ------- 263
Query: 274 ISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPL 333
WL ++ P SVVYISFG+V + ++ + SR+PF+W +R + L
Sbjct: 264 --WLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR------DKARVHL 315
Query: 334 PKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQ 393
P+GFLE G G +V WAPQ EVLAH AVG F TH GWNS ES+ GVP+IC+P+ DQ
Sbjct: 316 PEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQ 375
Query: 394 MVNARYVSHFWRVGLHSEWKL-ERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRK 452
+N R V +G+ E + + + +++ + +G+++R + L+E D +
Sbjct: 376 RLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGP 435
Query: 453 GGSSHQSLERLIDHI 467
GSS ++ L+D +
Sbjct: 436 KGSSTENFITLVDLV 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 133/479 (27%), Positives = 214/479 (44%), Gaps = 56/479 (11%)
Query: 17 RVILFPLPFQGHINPMLHLASIL--YSKGFSVTIIHTDFN---FSSTNYFS--CNYPHFD 69
+I P P GH+ L A +L + K +T+ F F+ + S + P
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ 70
Query: 70 FHSFPDGFSETEASVEDVAV---FFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCL 126
P E E +++ F+ + ++P + ++ +K L
Sbjct: 71 LIDLP----EVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKV--------VGL 118
Query: 127 ITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPV-----QDHQSLE 181
+ D F V +F +P+ + T V GFL+ L+ R V +DHQ L
Sbjct: 119 VLDFFCVSMIDVGNEFGIPSYLFLTSNV-GFLSLMLS--LKNRQIEEVFDDSDRDHQLLN 175
Query: 182 TP--VTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLA 239
P + P + D +++ Y + + + G+I N++ DLEQ+ +
Sbjct: 176 IPGISNQVPSNVLPD----ACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDAL 231
Query: 240 HQKYLSIP-IFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSV-IAIN 297
+ IP I+ +GPL + L + + WLD+Q KSVV++ FGS+ ++
Sbjct: 232 YDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFG 291
Query: 298 KDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLE--MLDGRGCIVKWAPQQE 355
EIA G+ +S + FLW S + + P+GFLE L+G+G I WAPQ E
Sbjct: 292 PSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVE 344
Query: 356 VLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLE 415
VLAH A+GGF +H GWNS LESM GVP++ P +Q +NA + W VGL
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404
Query: 416 R-------MEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467
+ EIE+ ++ +M + + ++ +KE + GGSS S+ +LID I
Sbjct: 405 KGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 133/479 (27%), Positives = 214/479 (44%), Gaps = 56/479 (11%)
Query: 17 RVILFPLPFQGHINPMLHLASIL--YSKGFSVTIIHTDFN---FSSTNYFS--CNYPHFD 69
+I P P GH+ L A +L + K +T+ F F+ + S + P
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ 70
Query: 70 FHSFPDGFSETEASVEDVAV---FFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCL 126
P E E +++ F+ + ++P + ++ +K L
Sbjct: 71 LIDLP----EVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKV--------VGL 118
Query: 127 ITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPV-----QDHQSLE 181
+ D F V +F +P+ + T V GFL+ L+ R V +DHQ L
Sbjct: 119 VLDFFCVSMIDVGNEFGIPSYLFLTSNV-GFLSLMLS--LKNRQIEEVFDDSDRDHQLLN 175
Query: 182 TP--VTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLA 239
P + P + D +++ Y + + + G+I N++ DLEQ+ +
Sbjct: 176 IPGISNQVPSNVLPD----ACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDAL 231
Query: 240 HQKYLSIP-IFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSV-IAIN 297
+ IP I+ +GPL + L + + WLD+Q KSVV++ FGS+ ++
Sbjct: 232 YDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFG 291
Query: 298 KDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLE--MLDGRGCIVKWAPQQE 355
EIA G+ +S + FLW S + + P+GFLE L+G+G I WAPQ E
Sbjct: 292 PSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVE 344
Query: 356 VLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLE 415
VLAH A+GGF +H GWNS LESM GVP++ P +Q +NA + W VGL
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404
Query: 416 R-------MEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467
+ EIE+ ++ +M + + ++ +KE + GGSS S+ +LID I
Sbjct: 405 KGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 347 IVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYL---PDQMVNARYVSHF 403
+ KW PQ ++L HP F TH G N E++ G+P + P PD + + +
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAA 131
Query: 404 WRVGLHSEWKLERMEIERAIRRVMVEAEGQE---MRARIMH 441
RV ++ ++ A++RV+ + +E +RI H
Sbjct: 132 VRVDFNTX---SSTDLLNALKRVINDPSYKENVXKLSRIQH 169
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 349 KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGL 408
+W PQ ++L F TH+G ST+E++ VPM+ P + +Q +NA + GL
Sbjct: 311 QWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL---GL 365
Query: 409 HSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKV 446
+++ E+ V+ A + R+ +++++
Sbjct: 366 GRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEI 403
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 1 MEGRNDSCRMVPRNGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52
M + S + PR+ + F +P GH+NP L + L ++G V+ TD
Sbjct: 1 MTSEHRSASVTPRH---ISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITD 49
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 327 AEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMIC 386
A+ ++PLP+G L G+ + P +V+ H H G +TL + EGVP +
Sbjct: 276 AQTLQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVS 325
Query: 387 QPYLPDQMVNARYVSHFWRVGLHSEWKLERME 418
P + + +AR + H G+ W+ +E
Sbjct: 326 VPVIAEVWDSARLL-HAAGAGVEVPWEQAGVE 356
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 327 AEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMIC 386
A+ ++PLP+G L G+ + P +V+ H H G +TL + EGVP +
Sbjct: 275 AQTLQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVS 324
Query: 387 QPYLPDQMVNARYVSHFWRVGLHSEWKLERME 418
P + + +AR + H G+ W+ +E
Sbjct: 325 VPVIAEVWDSARLL-HAAGAGVEVPWEQAGVE 355
>pdb|3NRN|A Chain A, Crystal Structure Of Pf1083 Protein From Pyrococcus
Furiosus, Northeast Structural Genomics Consortium
Target Pfr223
Length = 421
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 368 HSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERM 417
GW LE EG P++ Q Y VN R GLH EW L +
Sbjct: 331 EKGWEELLEIFPEGEPLLAQVYRDGNPVNRT------RAGLHIEWPLNEV 374
>pdb|2F28|A Chain A, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
pdb|2F29|A Chain A, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
In Complex With Dana Inhibitor
pdb|2F29|B Chain B, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
In Complex With Dana Inhibitor
Length = 382
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 189 PLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPI 248
P +V + Q LET + NV R T G W+S RDL A +G A++++ +
Sbjct: 108 PGQVTEQQQLET--RANVTRLCQVTST----DHGRTWSSPRDLTDAAIGPAYREWST--- 158
Query: 249 FPIGPLH 255
F +GP H
Sbjct: 159 FAVGPGH 165
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 350 WAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNA 397
W PQ +L + F TH+G + E + PMI P DQ NA
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 147 IVLQTCGVSGFLAFTAYPILRERAYLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENV 206
I+ Q G+ F T +LR Y Q++ TP+ E PL + I + + ++ +
Sbjct: 41 ILPQDAGLWEFFEATVKSLLRAYGY------QNIRTPIVEHTPLFTRGIGEVTDIVEKEM 94
Query: 207 YRFVSAIDTQ 216
Y FV A++ +
Sbjct: 95 YSFVDALNGE 104
>pdb|1SNT|A Chain A, Structure Of The Human Cytosolic Sialidase Neu2
pdb|1SO7|A Chain A, Maltose-Induced Structure Of The Human Cytolsolic
Sialidase Neu2
pdb|1VCU|A Chain A, Structure Of The Human Cytosolic Sialidase Neu2 In Complex
With The Inhibitor Dana
pdb|1VCU|B Chain B, Structure Of The Human Cytosolic Sialidase Neu2 In Complex
With The Inhibitor Dana
pdb|2F0Z|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Zanamivir Inhibitor
pdb|2F10|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Peramivir Inhibitor
pdb|2F11|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Isobutyl Ether Mimetic Inhibitor
pdb|2F12|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With 3- Hydroxypropyl Ether Mimetic Inhibitor
pdb|2F13|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With 2',3'- Dihydroxypropyl Ether Mimetic Inhibitor
Length = 382
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 189 PLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPI 248
P +V + Q L+T + NV R T G W+S RDL A +G A++++ +
Sbjct: 108 PGQVTEQQQLQT--RANVTRLCQVTST----DHGRTWSSPRDLTDAAIGPAYREWST--- 158
Query: 249 FPIGPLH 255
F +GP H
Sbjct: 159 FAVGPGH 165
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 81/426 (19%), Positives = 153/426 (35%), Gaps = 74/426 (17%)
Query: 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNY----PHFDFH 71
R ++ + GH+ P L L S L +G +T + T FD
Sbjct: 5 RHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFDTF 64
Query: 72 SFPDGFSETEASVEDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAF 131
P+ + +A + V+ R+ +A ++++ + D+ P ++ D F
Sbjct: 65 HVPEVVKQEDAETQLHLVYV-----------RENVA--ILRAAEEALGDNPPDLVVYDVF 111
Query: 132 WFFT-HTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPVQDHQSLETPVTEFPPL 190
F +AA + P + L GF A Y + +E Q H +
Sbjct: 112 PFIAGRLLAARWDRPAVRL----TGGFAANEHYSLFKELWKSNGQRHPA----------- 156
Query: 191 RVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSI---P 247
D++ + ++ + + ++ +DT + W+ L L + Q +
Sbjct: 157 ---DVEAVHSVLVDLLGKY--GVDTPVKE----YWDEIEGLTIVFLPKSFQPFAETFDER 207
Query: 248 IFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWG 307
+GP +L+ +D Q W + V+ +S G+ + + F A
Sbjct: 208 FAFVGP----------TLTGRDGQPG--WQPPRPDAPVLLVSLGNQFNEHPEFFRACAQA 255
Query: 308 VANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWT 367
A++ P+ V G + PLP +W P VLAH T
Sbjct: 256 FADT--PWHVVXAIGGFLDPAVLGPLPPNVEAH--------QWIPFHSVLAH--ARACLT 303
Query: 368 HSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERME---IERAIR 424
H + LE+ GVP++ P+ + A +GL S + +++E I A+
Sbjct: 304 HGTTGAVLEAFAAGVPLVLVPHFATEA--APSAERVIELGLGSVLRPDQLEPASIREAVE 361
Query: 425 RVMVEA 430
R+ ++
Sbjct: 362 RLAADS 367
>pdb|3K11|A Chain A, Crystal Structure Of Putative Glycosyl Hydrolase
(Np_813087.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.80 A Resolution
Length = 445
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 253 PLHKCSPASSGSLSS-------QDYQRSISWLDKQTPKSVVYISFGSVI 294
PLH PA G+ +D R +++DK+TP VV + G VI
Sbjct: 12 PLHLLQPAYQGTYGDLTPEQVKKDIDRVFAYIDKETPARVVDKNTGKVI 60
>pdb|2F26|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant
pdb|2F27|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant In Complex With Dana Inhibitor
pdb|2F27|B Chain B, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant In Complex With Dana Inhibitor
Length = 382
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 189 PLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPI 248
P +V Q L+T + NV R T G W+S RDL A +G A++++ +
Sbjct: 108 PGQVTQEQQLQT--RANVTRLCQVTST----DHGRTWSSPRDLTDAAIGPAYREWST--- 158
Query: 249 FPIGPLH 255
F +GP H
Sbjct: 159 FAVGPGH 165
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 362 VGGFWTHSGWNSTLESMCEGVPMICQPY 389
VGG + + G ++ LE C G+P+I PY
Sbjct: 283 VGGTFVNIGGHNLLEPTCWGIPVIYGPY 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,500,351
Number of Sequences: 62578
Number of extensions: 601824
Number of successful extensions: 1928
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1890
Number of HSP's gapped (non-prelim): 28
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)