Query 012151
Match_columns 470
No_of_seqs 132 out of 1184
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 23:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.1E-67 2.4E-72 525.2 48.6 443 15-470 7-451 (451)
2 PLN02555 limonoid glucosyltran 100.0 3.1E-64 6.8E-69 502.2 47.0 441 14-469 6-469 (480)
3 PLN02562 UDP-glycosyltransfera 100.0 6.6E-64 1.4E-68 499.7 45.9 431 15-468 6-448 (448)
4 PLN02173 UDP-glucosyl transfer 100.0 1.9E-63 4.2E-68 492.5 45.0 422 15-468 5-447 (449)
5 PLN02670 transferase, transfer 100.0 1.6E-63 3.5E-68 495.3 42.6 438 13-470 4-466 (472)
6 PLN02992 coniferyl-alcohol glu 100.0 3.5E-63 7.7E-68 493.2 43.6 434 15-470 5-470 (481)
7 PLN02210 UDP-glucosyl transfer 100.0 6.1E-63 1.3E-67 493.2 45.0 429 14-468 7-454 (456)
8 PLN02448 UDP-glycosyltransfera 100.0 8.8E-63 1.9E-67 495.4 44.7 433 13-469 8-457 (459)
9 PLN02207 UDP-glycosyltransfera 100.0 2E-62 4.3E-67 487.0 45.4 443 15-469 3-465 (468)
10 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.3E-62 4.9E-67 490.5 44.9 442 14-470 8-472 (477)
11 PLN02208 glycosyltransferase f 100.0 1.8E-61 3.8E-66 479.6 43.6 421 15-470 4-440 (442)
12 PLN02152 indole-3-acetate beta 100.0 2.9E-61 6.2E-66 477.8 44.9 428 15-467 3-454 (455)
13 PLN02534 UDP-glycosyltransfera 100.0 2.1E-61 4.5E-66 482.4 43.9 439 14-469 7-486 (491)
14 PLN02554 UDP-glycosyltransfera 100.0 2.5E-61 5.3E-66 486.6 44.8 438 15-469 2-478 (481)
15 PLN00164 glucosyltransferase; 100.0 3.9E-61 8.5E-66 483.2 45.4 438 15-469 3-473 (480)
16 PLN03007 UDP-glucosyltransfera 100.0 3.8E-61 8.2E-66 485.9 45.3 440 14-470 4-481 (482)
17 PLN03015 UDP-glucosyl transfer 100.0 6E-61 1.3E-65 474.5 45.0 436 15-468 3-467 (470)
18 PLN02764 glycosyltransferase f 100.0 3E-61 6.5E-66 475.2 42.7 419 15-470 5-446 (453)
19 PLN03004 UDP-glycosyltransfera 100.0 3.3E-61 7.1E-66 476.8 41.8 429 15-458 3-450 (451)
20 PLN00414 glycosyltransferase f 100.0 6.7E-61 1.4E-65 476.0 42.8 421 14-469 3-440 (446)
21 PLN02167 UDP-glycosyltransfera 100.0 3.4E-60 7.3E-65 477.6 44.2 445 15-469 3-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 8.7E-52 1.9E-56 418.3 27.9 412 15-468 20-466 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.5E-53 3.3E-58 438.3 -5.8 388 17-449 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.1E-45 2.4E-50 368.3 26.2 382 21-469 1-392 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 4.4E-44 9.6E-49 358.3 24.0 376 16-464 1-399 (401)
26 COG1819 Glycosyl transferases, 100.0 6.6E-43 1.4E-47 344.5 19.8 387 15-468 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 4.8E-40 1E-44 338.2 24.0 395 16-448 6-438 (496)
28 PRK12446 undecaprenyldiphospho 99.9 1.1E-24 2.3E-29 212.4 29.4 306 17-429 3-325 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 2.1E-24 4.5E-29 209.3 24.7 305 16-426 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 6.5E-22 1.4E-26 190.6 28.5 321 16-448 1-337 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 2.9E-22 6.2E-27 194.0 21.5 127 282-436 187-318 (321)
32 PRK00726 murG undecaprenyldiph 99.9 3.2E-19 6.8E-24 175.9 27.2 340 16-468 2-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.3E-17 2.9E-22 163.8 28.0 316 17-438 1-330 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.5E-15 3.2E-20 149.2 28.2 321 16-448 1-334 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 1.1E-15 2.5E-20 151.1 21.7 351 17-465 7-384 (385)
36 COG4671 Predicted glycosyl tra 99.7 4.5E-15 9.7E-20 136.6 23.4 334 15-428 9-364 (400)
37 PRK13609 diacylglycerol glucos 99.6 2.6E-14 5.7E-19 142.1 21.6 164 281-467 200-369 (380)
38 TIGR03590 PseG pseudaminic aci 99.6 2.5E-14 5.5E-19 135.1 19.4 104 283-399 170-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.6 1.3E-13 2.9E-18 137.0 22.7 347 16-468 2-376 (380)
40 PF04101 Glyco_tran_28_C: Glyc 99.5 9.2E-16 2E-20 134.0 -1.9 135 285-429 1-144 (167)
41 PRK13608 diacylglycerol glucos 99.5 3.2E-12 6.9E-17 127.3 22.4 165 281-468 200-370 (391)
42 PLN02605 monogalactosyldiacylg 99.5 1.6E-11 3.6E-16 121.9 24.6 114 343-468 265-380 (382)
43 TIGR03492 conserved hypothetic 99.5 4.5E-11 9.8E-16 118.6 27.5 351 24-465 5-394 (396)
44 cd03814 GT1_like_2 This family 99.4 1.6E-09 3.4E-14 106.4 33.2 156 284-467 197-363 (364)
45 PF03033 Glyco_transf_28: Glyc 99.4 6.1E-13 1.3E-17 112.4 5.5 130 18-154 1-132 (139)
46 PLN02871 UDP-sulfoquinovose:DA 99.4 5.5E-09 1.2E-13 106.7 34.4 125 285-429 264-400 (465)
47 cd03823 GT1_ExpE7_like This fa 99.3 2.2E-09 4.7E-14 105.0 29.0 129 283-429 190-329 (359)
48 cd03818 GT1_ExpC_like This fam 99.3 2.7E-08 5.8E-13 99.6 33.7 79 343-429 281-366 (396)
49 COG3980 spsG Spore coat polysa 99.3 9.2E-10 2E-14 98.9 19.1 144 283-443 158-304 (318)
50 cd03801 GT1_YqgM_like This fam 99.2 4.4E-08 9.4E-13 95.6 31.3 339 26-467 14-373 (374)
51 cd04962 GT1_like_5 This family 99.2 5.7E-08 1.2E-12 96.0 30.5 113 343-469 253-370 (371)
52 cd03800 GT1_Sucrose_synthase T 99.2 3.1E-08 6.6E-13 98.9 27.9 79 343-429 283-368 (398)
53 cd03817 GT1_UGDG_like This fam 99.2 1.5E-07 3.3E-12 92.4 32.4 79 342-429 258-343 (374)
54 cd03794 GT1_wbuB_like This fam 99.2 3.6E-08 7.7E-13 97.3 27.4 131 283-429 219-365 (394)
55 PRK10307 putative glycosyl tra 99.2 3.7E-07 8.1E-12 91.8 35.1 164 283-469 228-407 (412)
56 cd03808 GT1_cap1E_like This fa 99.1 2.6E-07 5.6E-12 90.0 32.9 313 17-429 1-329 (359)
57 cd03816 GT1_ALG1_like This fam 99.1 3.4E-08 7.4E-13 99.3 26.4 91 343-443 294-399 (415)
58 cd03798 GT1_wlbH_like This fam 99.1 4.9E-07 1.1E-11 88.5 32.0 161 283-469 201-376 (377)
59 cd03825 GT1_wcfI_like This fam 99.1 7.2E-07 1.6E-11 87.7 31.7 114 342-469 243-364 (365)
60 PRK05749 3-deoxy-D-manno-octul 99.0 1.9E-07 4.1E-12 94.3 27.2 70 354-429 314-388 (425)
61 cd03820 GT1_amsD_like This fam 99.0 6.8E-07 1.5E-11 86.6 29.1 94 343-447 235-334 (348)
62 TIGR03449 mycothiol_MshA UDP-N 99.0 5.1E-07 1.1E-11 90.5 27.9 79 343-429 283-368 (405)
63 cd03795 GT1_like_4 This family 99.0 1.4E-06 3E-11 85.4 30.2 128 284-429 191-332 (357)
64 TIGR02472 sucr_P_syn_N sucrose 99.0 1.5E-06 3.2E-11 88.1 31.0 164 285-467 249-438 (439)
65 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 1.7E-08 3.7E-13 99.6 16.3 159 282-467 197-362 (363)
66 PF04007 DUF354: Protein of un 99.0 3.1E-07 6.8E-12 88.0 23.6 289 27-428 11-309 (335)
67 cd03821 GT1_Bme6_like This fam 98.9 4.7E-06 1E-10 81.6 32.6 78 342-429 261-345 (375)
68 cd03805 GT1_ALG2_like This fam 98.9 2.4E-06 5.2E-11 85.2 30.1 79 342-429 279-364 (392)
69 cd03796 GT1_PIG-A_like This fa 98.9 3.8E-06 8.3E-11 84.1 30.4 77 343-429 250-333 (398)
70 PRK14089 ipid-A-disaccharide s 98.9 2.8E-07 6.1E-12 89.1 20.6 157 284-465 168-346 (347)
71 TIGR00236 wecB UDP-N-acetylglu 98.9 2.6E-07 5.5E-12 91.4 20.7 136 283-440 197-342 (365)
72 TIGR02468 sucrsPsyn_pln sucros 98.8 8.7E-06 1.9E-10 88.0 31.9 374 14-429 168-637 (1050)
73 cd03822 GT1_ecORF704_like This 98.8 3.8E-06 8.3E-11 82.4 27.5 108 343-466 247-364 (366)
74 cd03819 GT1_WavL_like This fam 98.8 3.1E-06 6.8E-11 82.9 26.8 78 343-428 246-329 (355)
75 cd03802 GT1_AviGT4_like This f 98.8 2.8E-06 6.1E-11 82.5 24.2 126 286-429 173-308 (335)
76 cd04955 GT1_like_6 This family 98.8 1.1E-05 2.4E-10 79.3 28.6 155 287-467 196-362 (363)
77 cd03807 GT1_WbnK_like This fam 98.8 1.2E-05 2.6E-10 78.4 28.8 109 343-467 251-364 (365)
78 PRK09922 UDP-D-galactose:(gluc 98.8 3.2E-06 6.9E-11 83.4 24.4 131 284-430 180-325 (359)
79 cd05844 GT1_like_7 Glycosyltra 98.8 9.4E-06 2E-10 80.1 27.6 80 342-429 244-336 (367)
80 cd04951 GT1_WbdM_like This fam 98.7 1.8E-05 3.9E-10 77.6 28.4 158 283-468 187-359 (360)
81 TIGR02149 glgA_Coryne glycogen 98.7 2.5E-05 5.4E-10 77.8 29.5 164 284-469 201-386 (388)
82 cd03799 GT1_amsK_like This is 98.7 2E-05 4.4E-10 77.1 28.0 80 342-429 235-327 (355)
83 cd03811 GT1_WabH_like This fam 98.7 5.9E-06 1.3E-10 80.0 23.9 132 282-429 187-332 (353)
84 PLN02846 digalactosyldiacylgly 98.7 1.2E-05 2.6E-10 80.6 24.9 121 287-429 231-363 (462)
85 PLN02275 transferase, transfer 98.6 8.7E-05 1.9E-09 73.5 30.1 75 343-427 286-371 (371)
86 TIGR02470 sucr_synth sucrose s 98.6 0.00025 5.3E-09 75.3 32.8 79 343-427 619-707 (784)
87 cd03812 GT1_CapH_like This fam 98.6 6.2E-05 1.4E-09 73.8 27.2 83 343-437 249-336 (358)
88 TIGR03088 stp2 sugar transfera 98.5 0.00016 3.4E-09 71.7 29.2 113 343-469 255-372 (374)
89 TIGR03087 stp1 sugar transfera 98.5 0.00016 3.4E-09 72.4 28.9 109 343-467 280-394 (397)
90 KOG3349 Predicted glycosyltran 98.5 8.9E-07 1.9E-11 72.0 8.5 117 284-412 4-134 (170)
91 cd03792 GT1_Trehalose_phosphor 98.5 0.00013 2.9E-09 72.2 25.7 111 343-469 252-371 (372)
92 cd03809 GT1_mtfB_like This fam 98.4 0.00015 3.3E-09 71.0 25.3 92 341-445 251-349 (365)
93 cd03804 GT1_wbaZ_like This fam 98.4 3.5E-05 7.7E-10 75.6 20.0 123 287-429 198-326 (351)
94 cd03806 GT1_ALG11_like This fa 98.4 0.00011 2.4E-09 73.9 23.4 79 342-429 304-392 (419)
95 PRK15179 Vi polysaccharide bio 98.4 0.0013 2.9E-08 69.6 31.4 111 343-467 574-691 (694)
96 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 5.4E-05 1.2E-09 74.6 19.3 131 282-428 200-338 (365)
97 COG1519 KdtA 3-deoxy-D-manno-o 98.3 0.0013 2.8E-08 63.8 27.4 335 18-469 51-417 (419)
98 PLN00142 sucrose synthase 98.3 0.00048 1E-08 73.2 26.6 65 365-438 670-742 (815)
99 PRK01021 lpxB lipid-A-disaccha 98.3 0.0012 2.5E-08 67.7 27.9 185 245-450 380-589 (608)
100 PF02350 Epimerase_2: UDP-N-ac 98.3 1.4E-05 3E-10 78.0 13.3 159 281-468 178-346 (346)
101 TIGR02095 glgA glycogen/starch 98.2 0.00054 1.2E-08 70.2 24.7 162 284-469 291-472 (473)
102 PRK00654 glgA glycogen synthas 98.2 0.00039 8.5E-09 71.1 22.1 135 283-428 281-427 (466)
103 PLN02949 transferase, transfer 98.1 0.0033 7.2E-08 63.9 27.7 80 342-429 334-422 (463)
104 COG0381 WecB UDP-N-acetylgluco 98.1 0.00029 6.3E-09 67.6 18.5 328 19-441 6-350 (383)
105 PRK15484 lipopolysaccharide 1, 98.1 9.7E-05 2.1E-09 73.4 16.2 116 340-469 254-377 (380)
106 PRK15427 colanic acid biosynth 98.1 9.6E-05 2.1E-09 74.1 15.9 162 284-470 222-406 (406)
107 PF02684 LpxB: Lipid-A-disacch 98.1 0.0033 7.1E-08 61.5 25.7 192 245-459 152-367 (373)
108 cd04950 GT1_like_1 Glycosyltra 98.0 0.012 2.7E-07 58.2 29.2 108 343-469 254-371 (373)
109 cd04946 GT1_AmsK_like This fam 98.0 0.0002 4.4E-09 71.8 15.4 160 284-464 230-406 (407)
110 PLN02501 digalactosyldiacylgly 98.0 0.001 2.3E-08 68.8 20.2 122 284-429 548-681 (794)
111 cd03791 GT1_Glycogen_synthase_ 98.0 0.0027 5.9E-08 65.2 23.7 163 283-468 295-475 (476)
112 TIGR02918 accessory Sec system 98.0 0.0035 7.5E-08 64.4 24.0 160 285-469 320-499 (500)
113 PF13844 Glyco_transf_41: Glyc 97.9 0.00022 4.7E-09 71.1 14.4 171 281-469 282-466 (468)
114 PLN02316 synthase/transferase 97.9 0.0038 8.2E-08 68.3 24.4 163 285-468 841-1032(1036)
115 PRK10125 putative glycosyl tra 97.9 0.013 2.9E-07 58.6 25.9 154 286-470 243-405 (405)
116 cd03813 GT1_like_3 This family 97.8 0.0037 8E-08 64.1 22.1 80 343-429 354-442 (475)
117 COG5017 Uncharacterized conser 97.8 0.00021 4.5E-09 57.3 8.8 108 286-412 2-123 (161)
118 PF00534 Glycos_transf_1: Glyc 97.7 0.00033 7.2E-09 61.0 10.8 133 281-429 12-158 (172)
119 COG0763 LpxB Lipid A disacchar 97.6 0.028 6E-07 54.2 21.6 202 245-468 155-380 (381)
120 COG1817 Uncharacterized protei 97.5 0.082 1.8E-06 49.3 22.8 101 27-152 11-113 (346)
121 cd04949 GT1_gtfA_like This fam 97.5 0.018 4E-07 56.8 20.2 82 343-429 261-345 (372)
122 PRK09814 beta-1,6-galactofuran 97.4 0.00099 2.1E-08 64.9 10.2 110 342-465 206-331 (333)
123 PF13692 Glyco_trans_1_4: Glyc 97.3 0.0008 1.7E-08 55.9 6.7 80 342-429 52-135 (135)
124 PF06722 DUF1205: Protein of u 96.7 0.0024 5.2E-08 49.4 4.2 62 273-337 30-96 (97)
125 PRK15490 Vi polysaccharide bio 96.7 0.053 1.1E-06 55.5 14.8 73 343-423 455-532 (578)
126 COG3914 Spy Predicted O-linked 96.6 0.045 9.8E-07 55.1 13.6 131 281-423 427-572 (620)
127 KOG4626 O-linked N-acetylgluco 96.6 0.023 5E-07 57.4 11.3 137 281-429 756-904 (966)
128 cd01635 Glycosyltransferase_GT 96.5 0.35 7.7E-06 43.2 18.4 48 343-392 161-216 (229)
129 PHA01633 putative glycosyl tra 96.5 0.021 4.5E-07 55.2 10.4 101 342-446 200-324 (335)
130 PHA01630 putative group 1 glyc 96.3 0.14 3.1E-06 49.7 14.8 113 349-470 196-331 (331)
131 PF13524 Glyco_trans_1_2: Glyc 96.1 0.052 1.1E-06 41.6 8.7 81 368-464 9-91 (92)
132 PRK10017 colanic acid biosynth 96.0 0.21 4.5E-06 50.2 14.9 178 275-468 226-423 (426)
133 PRK14098 glycogen synthase; Pr 96.0 0.068 1.5E-06 54.9 11.6 134 284-428 307-450 (489)
134 PF13477 Glyco_trans_4_2: Glyc 95.9 0.083 1.8E-06 43.9 10.0 101 17-149 1-105 (139)
135 TIGR02193 heptsyl_trn_I lipopo 95.9 0.5 1.1E-05 45.6 16.6 54 17-74 1-57 (319)
136 PRK10916 ADP-heptose:LPS hepto 95.8 0.94 2E-05 44.3 18.3 103 16-148 1-106 (348)
137 TIGR02400 trehalose_OtsA alpha 95.2 0.17 3.7E-06 51.4 10.7 104 349-469 342-456 (456)
138 PF13579 Glyco_trans_4_4: Glyc 95.1 0.047 1E-06 46.1 5.6 96 31-150 6-103 (160)
139 TIGR02195 heptsyl_trn_II lipop 94.9 2.8 6E-05 40.7 18.3 102 17-148 1-105 (334)
140 TIGR02201 heptsyl_trn_III lipo 94.8 1.3 2.8E-05 43.3 15.7 105 17-148 1-108 (344)
141 PF06258 Mito_fiss_Elm1: Mitoc 94.7 0.48 1E-05 45.4 11.8 39 352-391 221-259 (311)
142 PF01975 SurE: Survival protei 94.6 0.28 6.1E-06 43.5 9.4 43 16-59 1-43 (196)
143 PF12000 Glyco_trans_4_3: Gkyc 94.6 0.36 7.8E-06 41.7 9.7 94 41-150 1-95 (171)
144 COG0859 RfaF ADP-heptose:LPS h 94.1 3.5 7.5E-05 40.1 16.7 105 16-149 2-108 (334)
145 cd03788 GT1_TPS Trehalose-6-Ph 93.8 0.85 1.8E-05 46.5 12.2 102 349-467 347-459 (460)
146 cd03789 GT1_LPS_heptosyltransf 93.7 5.3 0.00012 37.6 16.8 102 17-148 1-105 (279)
147 PRK10422 lipopolysaccharide co 93.2 9.2 0.0002 37.4 21.9 106 15-148 5-113 (352)
148 PLN02939 transferase, transfer 93.0 2.1 4.6E-05 46.9 14.0 134 285-428 780-930 (977)
149 PLN03063 alpha,alpha-trehalose 92.7 1.3 2.9E-05 48.3 12.1 98 355-469 371-477 (797)
150 COG0438 RfaG Glycosyltransfera 92.5 7.9 0.00017 36.5 16.5 79 343-429 257-342 (381)
151 PF08660 Alg14: Oligosaccharid 92.1 0.9 2E-05 39.3 8.2 115 19-151 2-129 (170)
152 PRK13932 stationary phase surv 92.1 4.2 9.1E-05 37.7 12.9 43 14-58 4-46 (257)
153 PRK14099 glycogen synthase; Pr 91.5 2.3 5E-05 43.7 11.9 39 14-52 2-46 (485)
154 PF13439 Glyco_transf_4: Glyco 91.2 2.3 4.9E-05 36.2 10.0 31 27-57 13-43 (177)
155 COG4370 Uncharacterized protei 90.8 0.49 1.1E-05 44.0 5.3 111 343-469 294-409 (412)
156 PRK13933 stationary phase surv 90.2 8 0.00017 35.8 12.8 41 16-58 1-41 (253)
157 TIGR03713 acc_sec_asp1 accesso 89.9 2.6 5.6E-05 43.6 10.5 74 343-429 409-488 (519)
158 TIGR00087 surE 5'/3'-nucleotid 89.7 9.1 0.0002 35.3 12.8 42 16-59 1-42 (244)
159 COG0496 SurE Predicted acid ph 89.0 6.9 0.00015 35.9 11.2 42 16-59 1-42 (252)
160 PRK14501 putative bifunctional 87.8 5.8 0.00013 43.1 12.0 110 347-469 346-462 (726)
161 PRK13935 stationary phase surv 87.4 15 0.00033 33.9 12.6 42 16-59 1-42 (253)
162 TIGR02919 accessory Sec system 87.0 9.8 0.00021 38.5 12.1 133 282-441 282-421 (438)
163 COG3660 Predicted nucleoside-d 86.0 29 0.00062 32.1 19.4 72 304-387 189-271 (329)
164 PRK13934 stationary phase surv 85.1 21 0.00045 33.3 12.2 41 16-58 1-41 (266)
165 PRK02797 4-alpha-L-fucosyltran 85.0 7.7 0.00017 36.8 9.4 80 343-427 206-292 (322)
166 PRK00346 surE 5'(3')-nucleotid 84.9 23 0.00049 32.8 12.4 42 16-59 1-42 (250)
167 PF02951 GSH-S_N: Prokaryotic 84.7 1.7 3.6E-05 35.1 4.4 38 16-53 1-41 (119)
168 PF05159 Capsule_synth: Capsul 84.6 4.9 0.00011 37.7 8.3 81 300-389 142-226 (269)
169 PRK13931 stationary phase surv 82.8 33 0.00072 31.9 12.7 41 17-58 2-45 (261)
170 PF00731 AIRC: AIR carboxylase 82.1 30 0.00064 29.2 12.3 137 285-449 2-149 (150)
171 COG1618 Predicted nucleotide k 81.4 6.1 0.00013 33.6 6.5 56 15-75 5-60 (179)
172 PRK10964 ADP-heptose:LPS hepto 79.3 8.9 0.00019 37.0 8.2 44 16-59 1-46 (322)
173 PF04464 Glyphos_transf: CDP-G 79.2 1.8 3.9E-05 42.7 3.4 110 343-464 252-368 (369)
174 COG2910 Putative NADH-flavin r 79.1 2.5 5.3E-05 36.7 3.6 35 16-54 1-35 (211)
175 TIGR00715 precor6x_red precorr 78.9 22 0.00048 33.0 10.2 35 16-55 1-35 (256)
176 TIGR02398 gluc_glyc_Psyn gluco 78.5 51 0.0011 33.8 13.5 108 346-469 365-482 (487)
177 cd03793 GT1_Glycogen_synthase_ 77.7 7 0.00015 40.6 7.0 75 352-429 467-552 (590)
178 PHA02542 41 41 helicase; Provi 76.9 5.1 0.00011 40.9 5.8 123 17-151 192-352 (473)
179 PRK06904 replicative DNA helic 76.5 8.2 0.00018 39.5 7.2 125 17-150 223-381 (472)
180 PRK08506 replicative DNA helic 76.3 8 0.00017 39.6 7.1 125 17-150 194-349 (472)
181 PRK02261 methylaspartate mutas 75.8 6 0.00013 32.8 5.0 42 14-55 2-43 (137)
182 PF02374 ArsA_ATPase: Anion-tr 74.7 6.6 0.00014 37.6 5.7 43 17-59 2-45 (305)
183 cd02067 B12-binding B12 bindin 73.8 5.2 0.00011 32.1 4.1 36 17-52 1-36 (119)
184 COG0003 ArsA Predicted ATPase 73.3 34 0.00073 33.0 10.1 43 17-59 3-46 (322)
185 PF02441 Flavoprotein: Flavopr 73.2 5.8 0.00013 32.5 4.3 44 16-60 1-44 (129)
186 PF07429 Glyco_transf_56: 4-al 73.0 36 0.00079 32.9 9.9 81 343-428 245-332 (360)
187 KOG0853 Glycosyltransferase [C 72.7 5.7 0.00012 40.3 4.8 60 373-440 381-441 (495)
188 PRK05595 replicative DNA helic 72.5 11 0.00023 38.4 6.8 124 17-150 203-358 (444)
189 TIGR03600 phage_DnaB phage rep 72.2 14 0.00031 37.1 7.7 125 17-150 196-351 (421)
190 PRK06321 replicative DNA helic 71.0 15 0.00033 37.5 7.6 40 17-56 228-268 (472)
191 PF01075 Glyco_transf_9: Glyco 69.6 8.3 0.00018 35.4 5.0 99 281-387 103-208 (247)
192 PRK08006 replicative DNA helic 69.0 17 0.00037 37.1 7.4 125 17-150 226-383 (471)
193 PRK08760 replicative DNA helic 68.5 9.7 0.00021 39.0 5.6 124 17-150 231-386 (476)
194 PRK05986 cob(I)alamin adenolsy 68.2 53 0.0012 28.9 9.3 62 15-77 22-86 (191)
195 PRK08840 replicative DNA helic 68.0 17 0.00037 37.1 7.2 125 17-150 219-376 (464)
196 KOG2941 Beta-1,4-mannosyltrans 67.1 1E+02 0.0023 29.8 11.4 127 14-156 11-142 (444)
197 PRK05636 replicative DNA helic 67.0 9.1 0.0002 39.5 5.0 124 17-150 267-422 (505)
198 cd00561 CobA_CobO_BtuR ATP:cor 66.9 81 0.0018 26.9 10.2 60 17-77 4-66 (159)
199 PF04127 DFP: DNA / pantothena 66.8 6.2 0.00013 34.7 3.3 52 16-74 4-67 (185)
200 PRK06718 precorrin-2 dehydroge 66.5 95 0.0021 27.6 12.4 159 281-464 9-180 (202)
201 cd00984 DnaB_C DnaB helicase C 66.5 22 0.00047 32.5 7.1 42 17-58 15-57 (242)
202 PRK05632 phosphate acetyltrans 66.5 92 0.002 33.6 12.7 102 17-153 4-116 (684)
203 COG0041 PurE Phosphoribosylcar 66.2 79 0.0017 26.6 12.2 139 285-451 4-153 (162)
204 cd00550 ArsA_ATPase Oxyanion-t 65.8 40 0.00086 31.3 8.7 38 18-55 3-40 (254)
205 PF12146 Hydrolase_4: Putative 65.8 12 0.00026 27.6 4.2 36 16-51 16-51 (79)
206 PRK06749 replicative DNA helic 64.9 14 0.0003 37.4 5.7 40 17-56 188-227 (428)
207 COG0541 Ffh Signal recognition 63.6 24 0.00052 35.1 6.8 61 14-74 99-162 (451)
208 TIGR02015 BchY chlorophyllide 63.5 53 0.0012 33.1 9.7 94 17-150 287-380 (422)
209 PRK08305 spoVFB dipicolinate s 62.1 12 0.00026 33.1 4.2 42 15-57 5-47 (196)
210 PF02310 B12-binding: B12 bind 62.0 16 0.00034 29.2 4.7 35 17-51 2-36 (121)
211 PRK08057 cobalt-precorrin-6x r 61.7 91 0.002 28.8 10.1 35 17-56 4-38 (248)
212 smart00851 MGS MGS-like domain 60.6 40 0.00086 25.4 6.4 32 32-70 2-33 (90)
213 PRK09165 replicative DNA helic 60.5 34 0.00073 35.3 7.8 122 17-150 219-390 (497)
214 PRK10964 ADP-heptose:LPS hepto 60.2 27 0.00058 33.6 6.7 119 296-428 194-321 (322)
215 PF06506 PrpR_N: Propionate ca 60.0 12 0.00025 32.6 3.8 71 358-429 31-124 (176)
216 PLN02948 phosphoribosylaminoim 58.7 2.1E+02 0.0046 30.2 13.4 140 284-451 411-561 (577)
217 PRK14077 pnk inorganic polypho 58.2 40 0.00087 31.9 7.3 51 359-429 64-120 (287)
218 PRK06732 phosphopantothenate-- 57.9 28 0.00061 31.7 6.1 30 20-51 19-48 (229)
219 PF02142 MGS: MGS-like domain 57.6 9.4 0.0002 29.3 2.5 84 32-147 2-94 (95)
220 COG2185 Sbm Methylmalonyl-CoA 57.4 18 0.00039 30.1 4.2 38 14-51 11-48 (143)
221 PRK10867 signal recognition pa 56.9 65 0.0014 32.5 8.9 59 15-73 100-162 (433)
222 COG0052 RpsB Ribosomal protein 56.8 29 0.00064 31.7 5.7 31 122-152 156-188 (252)
223 TIGR00665 DnaB replicative DNA 56.6 39 0.00085 34.1 7.5 42 17-58 197-239 (434)
224 TIGR01470 cysG_Nterm siroheme 55.8 1.5E+02 0.0033 26.4 12.1 147 281-449 8-165 (205)
225 PF09314 DUF1972: Domain of un 55.7 23 0.00049 31.1 4.8 45 27-74 17-62 (185)
226 PRK04885 ppnK inorganic polyph 54.9 15 0.00033 34.3 3.8 52 360-429 36-93 (265)
227 KOG0780 Signal recognition par 54.8 53 0.0011 32.3 7.3 59 14-72 100-161 (483)
228 PRK07773 replicative DNA helic 54.7 40 0.00086 37.7 7.6 125 17-151 219-375 (886)
229 PRK07004 replicative DNA helic 54.5 39 0.00084 34.5 7.0 125 17-150 215-371 (460)
230 PRK02649 ppnK inorganic polyph 54.2 17 0.00036 34.8 4.0 50 362-429 69-124 (305)
231 TIGR00959 ffh signal recogniti 53.8 76 0.0017 32.0 8.8 43 15-57 99-142 (428)
232 PRK02155 ppnK NAD(+)/NADH kina 52.7 21 0.00045 33.9 4.4 53 359-429 63-119 (291)
233 TIGR00708 cobA cob(I)alamin ad 52.5 1.2E+02 0.0027 26.2 8.7 61 16-78 6-69 (173)
234 cd01980 Chlide_reductase_Y Chl 52.5 1.2E+02 0.0025 30.6 10.0 27 121-150 349-375 (416)
235 PRK05748 replicative DNA helic 52.2 54 0.0012 33.3 7.7 43 16-58 204-247 (448)
236 PLN02929 NADH kinase 52.2 56 0.0012 31.1 7.1 64 360-429 65-137 (301)
237 cd07039 TPP_PYR_POX Pyrimidine 51.2 1.6E+02 0.0034 25.2 9.4 29 359-389 63-97 (164)
238 PLN03064 alpha,alpha-trehalose 49.8 62 0.0013 36.1 7.9 99 351-468 448-560 (934)
239 cd02070 corrinoid_protein_B12- 49.7 32 0.0007 30.6 5.0 39 15-53 82-120 (201)
240 PF02606 LpxK: Tetraacyldisacc 49.4 1.3E+02 0.0029 29.1 9.4 39 16-54 38-76 (326)
241 PRK13982 bifunctional SbtC-lik 49.0 45 0.00099 34.0 6.3 52 15-73 256-319 (475)
242 PF02571 CbiJ: Precorrin-6x re 48.9 82 0.0018 29.1 7.6 30 16-51 1-30 (249)
243 COG1703 ArgK Putative periplas 48.4 46 0.001 31.5 5.8 45 14-58 50-94 (323)
244 cd01424 MGS_CPS_II Methylglyox 48.3 75 0.0016 24.9 6.4 84 27-148 10-100 (110)
245 TIGR00347 bioD dethiobiotin sy 47.8 58 0.0013 27.6 6.2 29 22-50 5-33 (166)
246 cd01423 MGS_CPS_I_III Methylgl 47.6 80 0.0017 25.0 6.6 87 28-148 11-106 (116)
247 PRK05920 aromatic acid decarbo 47.5 32 0.00068 30.7 4.4 42 16-58 4-45 (204)
248 cd01974 Nitrogenase_MoFe_beta 47.4 1.5E+02 0.0032 30.1 9.9 27 121-150 376-402 (435)
249 PRK01911 ppnK inorganic polyph 47.2 27 0.00058 33.2 4.2 51 359-429 64-120 (292)
250 PF06925 MGDG_synth: Monogalac 47.1 44 0.00095 28.7 5.3 24 28-51 1-25 (169)
251 cd02071 MM_CoA_mut_B12_BD meth 47.1 32 0.00069 27.8 4.1 38 17-54 1-38 (122)
252 TIGR02852 spore_dpaB dipicolin 47.1 27 0.00058 30.7 3.9 38 17-54 2-39 (187)
253 PLN02470 acetolactate synthase 46.3 1.5E+02 0.0033 31.3 10.1 92 289-388 2-109 (585)
254 PRK09620 hypothetical protein; 45.8 39 0.00084 30.8 4.9 37 16-52 4-52 (229)
255 PRK06849 hypothetical protein; 45.2 45 0.00096 33.1 5.7 35 15-53 4-38 (389)
256 PRK04940 hypothetical protein; 45.1 49 0.0011 28.9 5.1 31 122-152 60-91 (180)
257 PRK03378 ppnK inorganic polyph 45.1 27 0.00059 33.1 3.9 51 359-429 63-119 (292)
258 COG1484 DnaC DNA replication p 45.0 34 0.00074 31.7 4.5 42 15-56 105-146 (254)
259 PF01210 NAD_Gly3P_dh_N: NAD-d 44.9 18 0.0004 30.6 2.5 32 17-53 1-32 (157)
260 TIGR02370 pyl_corrinoid methyl 44.7 41 0.0009 29.8 4.8 41 15-55 84-124 (197)
261 COG0299 PurN Folate-dependent 44.3 56 0.0012 28.8 5.3 120 298-444 65-186 (200)
262 PRK04539 ppnK inorganic polyph 44.1 27 0.00059 33.2 3.8 53 359-429 68-124 (296)
263 PRK14099 glycogen synthase; Pr 44.0 35 0.00076 35.1 4.9 131 285-429 296-447 (485)
264 PRK00784 cobyric acid synthase 43.8 2.9E+02 0.0064 28.4 11.5 35 17-51 4-39 (488)
265 COG0801 FolK 7,8-dihydro-6-hyd 43.8 45 0.00098 28.4 4.6 29 285-313 3-31 (160)
266 cd01425 RPS2 Ribosomal protein 43.4 36 0.00078 30.1 4.2 33 121-153 126-160 (193)
267 PF08323 Glyco_transf_5: Starc 42.8 20 0.00044 33.0 2.7 23 30-52 20-42 (245)
268 PF04413 Glycos_transf_N: 3-De 42.7 72 0.0016 28.0 6.0 99 18-151 23-126 (186)
269 KOG1111 N-acetylglucosaminyltr 42.3 3.4E+02 0.0075 26.6 18.1 44 342-387 251-301 (426)
270 PRK11519 tyrosine kinase; Prov 42.0 4.9E+02 0.011 28.3 13.5 42 15-56 525-568 (719)
271 COG1797 CobB Cobyrinic acid a, 41.9 30 0.00066 34.4 3.7 32 18-49 4-35 (451)
272 COG2861 Uncharacterized protei 41.5 1.5E+02 0.0031 27.2 7.6 27 122-148 149-178 (250)
273 TIGR01285 nifN nitrogenase mol 41.5 1.9E+02 0.0041 29.2 9.6 88 15-150 311-398 (432)
274 cd00532 MGS-like MGS-like doma 41.2 78 0.0017 25.0 5.5 39 28-73 10-48 (112)
275 PHA02754 hypothetical protein; 41.0 43 0.00094 22.7 3.2 26 421-449 5-30 (67)
276 PRK05114 hypothetical protein; 40.9 77 0.0017 21.6 4.3 33 433-469 11-43 (59)
277 PRK07313 phosphopantothenoylcy 40.8 28 0.0006 30.5 3.1 42 17-59 3-44 (182)
278 PF03701 UPF0181: Uncharacteri 40.6 86 0.0019 20.8 4.4 33 433-469 11-43 (51)
279 PRK06270 homoserine dehydrogen 40.4 2.1E+02 0.0045 27.9 9.4 59 352-411 80-150 (341)
280 PRK13789 phosphoribosylamine-- 40.3 1E+02 0.0022 31.1 7.4 35 15-54 4-38 (426)
281 PRK14075 pnk inorganic polypho 39.9 60 0.0013 30.2 5.3 49 363-429 43-94 (256)
282 COG1663 LpxK Tetraacyldisaccha 39.8 1.2E+02 0.0027 29.2 7.3 39 17-55 51-89 (336)
283 PRK03372 ppnK inorganic polyph 39.4 34 0.00074 32.7 3.6 53 359-429 72-128 (306)
284 TIGR02482 PFKA_ATP 6-phosphofr 39.3 25 0.00053 33.6 2.6 37 356-392 86-126 (301)
285 COG4088 Predicted nucleotide k 38.6 38 0.00082 30.3 3.4 35 18-52 4-38 (261)
286 PRK12475 thiamine/molybdopteri 38.5 1.3E+02 0.0028 29.3 7.6 33 14-51 23-56 (338)
287 PRK02231 ppnK inorganic polyph 38.3 28 0.00061 32.6 2.8 57 354-428 37-97 (272)
288 TIGR02113 coaC_strep phosphopa 38.3 35 0.00075 29.7 3.2 42 17-59 2-43 (177)
289 PRK01077 cobyrinic acid a,c-di 38.0 1.2E+02 0.0026 30.8 7.6 36 17-52 5-41 (451)
290 COG3195 Uncharacterized protei 37.6 1.5E+02 0.0033 25.3 6.6 96 352-448 64-165 (176)
291 PF07355 GRDB: Glycine/sarcosi 37.5 52 0.0011 31.8 4.4 29 121-149 79-117 (349)
292 PRK12342 hypothetical protein; 37.4 60 0.0013 30.1 4.8 31 122-152 109-145 (254)
293 PRK13604 luxD acyl transferase 37.4 65 0.0014 30.8 5.1 36 15-50 36-71 (307)
294 PRK06555 pyrophosphate--fructo 37.1 29 0.00062 34.5 2.8 65 356-428 107-180 (403)
295 PLN02939 transferase, transfer 37.0 62 0.0013 36.0 5.5 40 14-53 480-525 (977)
296 cd01965 Nitrogenase_MoFe_beta_ 36.9 1.3E+02 0.0027 30.4 7.5 27 121-150 370-396 (428)
297 PRK13010 purU formyltetrahydro 36.9 1.9E+02 0.0042 27.4 8.2 114 303-443 160-275 (289)
298 PF06180 CbiK: Cobalt chelatas 36.7 52 0.0011 30.7 4.3 39 283-321 1-42 (262)
299 PF04244 DPRP: Deoxyribodipyri 36.7 35 0.00076 31.0 3.1 26 28-53 47-72 (224)
300 PRK06276 acetolactate synthase 36.6 1.1E+02 0.0025 32.2 7.4 27 362-388 64-96 (586)
301 PRK13768 GTPase; Provisional 36.6 96 0.0021 28.7 6.1 37 17-53 4-40 (253)
302 PRK01185 ppnK inorganic polyph 36.2 45 0.00098 31.3 3.8 53 359-429 52-105 (271)
303 cd01141 TroA_d Periplasmic bin 36.1 56 0.0012 28.3 4.3 29 122-150 69-99 (186)
304 cd02069 methionine_synthase_B1 36.1 67 0.0015 28.9 4.8 41 14-54 87-127 (213)
305 cd00763 Bacterial_PFK Phosphof 35.7 30 0.00065 33.3 2.6 37 356-392 87-126 (317)
306 cd01421 IMPCH Inosine monophos 35.7 66 0.0014 28.2 4.5 43 30-79 11-55 (187)
307 TIGR01281 DPOR_bchL light-inde 35.4 63 0.0014 30.0 4.8 37 16-52 1-37 (268)
308 PF14626 RNase_Zc3h12a_2: Zc3h 35.4 43 0.00093 26.8 2.9 31 29-59 9-39 (122)
309 PF07905 PucR: Purine cataboli 35.1 2.4E+02 0.0051 22.7 7.6 43 273-319 36-79 (123)
310 PRK01231 ppnK inorganic polyph 35.1 54 0.0012 31.2 4.2 52 360-429 63-118 (295)
311 PRK13011 formyltetrahydrofolat 35.0 2.9E+02 0.0062 26.2 9.1 115 303-444 156-272 (286)
312 PRK07206 hypothetical protein; 34.9 1.6E+02 0.0036 29.3 8.0 32 17-53 4-35 (416)
313 COG3245 CycB Cytochrome c5 [En 34.7 65 0.0014 25.7 3.8 48 378-427 60-122 (126)
314 PRK07710 acetolactate synthase 34.6 1.1E+02 0.0024 32.2 7.0 28 359-388 78-111 (571)
315 cd02032 Bchl_like This family 34.6 65 0.0014 29.9 4.7 37 16-52 1-37 (267)
316 PRK02645 ppnK inorganic polyph 34.4 90 0.002 29.9 5.7 29 359-389 57-89 (305)
317 PRK05647 purN phosphoribosylgl 34.3 2.9E+02 0.0064 24.5 8.6 55 16-74 2-58 (200)
318 PRK06249 2-dehydropantoate 2-r 34.3 59 0.0013 31.1 4.5 47 15-72 5-51 (313)
319 PF07991 IlvN: Acetohydroxy ac 34.2 19 0.0004 30.8 0.8 50 15-74 4-55 (165)
320 PRK12446 undecaprenyldiphospho 34.1 1.3E+02 0.0028 29.5 6.9 97 284-388 3-121 (352)
321 TIGR00421 ubiX_pad polyprenyl 34.0 47 0.001 29.0 3.4 41 18-59 2-42 (181)
322 PF07894 DUF1669: Protein of u 33.9 61 0.0013 30.4 4.2 48 98-152 131-183 (284)
323 cd03466 Nitrogenase_NifN_2 Nit 33.8 1.9E+02 0.0041 29.2 8.2 27 121-150 371-397 (429)
324 PRK06719 precorrin-2 dehydroge 33.6 59 0.0013 27.6 3.8 36 14-54 12-47 (157)
325 CHL00072 chlL photochlorophyll 33.2 77 0.0017 30.0 5.0 40 16-55 1-40 (290)
326 cd02034 CooC The accessory pro 33.2 98 0.0021 24.7 4.9 37 17-53 1-37 (116)
327 cd07025 Peptidase_S66 LD-Carbo 33.1 69 0.0015 30.2 4.6 30 294-323 44-73 (282)
328 PRK08322 acetolactate synthase 33.0 1.3E+02 0.0028 31.5 7.1 27 362-388 64-96 (547)
329 PRK01175 phosphoribosylformylg 32.9 3E+02 0.0065 25.6 8.7 57 15-78 3-59 (261)
330 PRK03501 ppnK inorganic polyph 32.8 49 0.0011 30.9 3.5 53 360-429 40-97 (264)
331 COG0297 GlgA Glycogen synthase 32.8 1.2E+02 0.0027 31.1 6.6 120 337-468 343-476 (487)
332 TIGR02483 PFK_mixed phosphofru 32.5 37 0.00081 32.8 2.7 37 356-392 89-128 (324)
333 cd01121 Sms Sms (bacterial rad 32.4 3.7E+02 0.0081 26.5 9.7 41 16-56 83-123 (372)
334 PF03853 YjeF_N: YjeF-related 32.2 82 0.0018 27.1 4.6 36 15-51 25-60 (169)
335 PLN02935 Bifunctional NADH kin 32.2 55 0.0012 33.4 3.9 52 362-429 263-318 (508)
336 PTZ00445 p36-lilke protein; Pr 31.8 2.3E+02 0.0049 25.6 7.2 28 27-54 74-102 (219)
337 TIGR01380 glut_syn glutathione 31.7 59 0.0013 31.2 4.0 40 16-55 1-43 (312)
338 COG2210 Peroxiredoxin family p 31.6 98 0.0021 25.5 4.6 35 17-51 4-39 (137)
339 PF09001 DUF1890: Domain of un 31.6 52 0.0011 27.1 3.0 33 27-59 11-43 (139)
340 PF13450 NAD_binding_8: NAD(P) 31.5 59 0.0013 23.0 3.0 21 32-52 8-28 (68)
341 TIGR01162 purE phosphoribosyla 31.2 3.3E+02 0.0072 23.1 12.5 135 288-450 3-148 (156)
342 PRK03359 putative electron tra 31.0 88 0.0019 29.1 4.8 31 122-152 112-148 (256)
343 COG3140 Uncharacterized protei 30.9 1.3E+02 0.0028 20.3 4.1 32 434-469 12-43 (60)
344 PRK14071 6-phosphofructokinase 30.7 40 0.00086 33.1 2.6 37 356-392 102-142 (360)
345 PRK00771 signal recognition pa 30.7 1E+02 0.0022 31.2 5.6 42 15-56 95-136 (437)
346 PRK14092 2-amino-4-hydroxy-6-h 30.5 1.2E+02 0.0026 26.0 5.1 32 281-312 5-36 (163)
347 cd07035 TPP_PYR_POX_like Pyrim 30.1 60 0.0013 27.2 3.4 29 360-390 60-94 (155)
348 PRK03708 ppnK inorganic polyph 30.0 59 0.0013 30.6 3.6 51 363-429 59-112 (277)
349 TIGR03029 EpsG chain length de 29.8 4.5E+02 0.0098 24.3 12.0 37 16-52 103-141 (274)
350 PF01695 IstB_IS21: IstB-like 29.4 1E+02 0.0022 26.8 4.7 39 15-53 47-85 (178)
351 KOG1250 Threonine/serine dehyd 29.3 5.8E+02 0.013 25.4 13.6 59 365-429 248-316 (457)
352 PRK03202 6-phosphofructokinase 29.3 42 0.00091 32.4 2.5 37 356-392 88-127 (320)
353 cd07062 Peptidase_S66_mccF_lik 29.2 87 0.0019 30.0 4.7 28 296-323 50-77 (308)
354 PRK00207 sulfur transfer compl 29.2 1.2E+02 0.0026 24.7 4.8 24 28-51 16-40 (128)
355 COG0859 RfaF ADP-heptose:LPS h 29.1 1.1E+02 0.0024 29.6 5.4 99 16-152 176-279 (334)
356 TIGR02700 flavo_MJ0208 archaeo 29.0 58 0.0013 29.8 3.3 34 27-60 10-46 (234)
357 PF03720 UDPG_MGDP_dh_C: UDP-g 28.9 67 0.0015 25.1 3.2 23 30-52 17-39 (106)
358 cd03412 CbiK_N Anaerobic cobal 28.8 94 0.002 25.3 4.2 37 283-319 1-39 (127)
359 cd00861 ProRS_anticodon_short 28.6 1.1E+02 0.0023 22.9 4.3 35 16-50 2-38 (94)
360 cd01983 Fer4_NifH The Fer4_Nif 28.5 1.3E+02 0.0028 22.0 4.8 33 18-50 2-34 (99)
361 PF07565 Band_3_cyto: Band 3 c 28.3 1.2E+02 0.0026 28.2 5.2 43 413-466 203-245 (257)
362 TIGR00355 purH phosphoribosyla 28.0 94 0.002 31.8 4.7 43 30-79 11-55 (511)
363 PRK06522 2-dehydropantoate 2-r 28.0 73 0.0016 30.1 3.9 31 16-51 1-31 (304)
364 COG0059 IlvC Ketol-acid reduct 27.9 54 0.0012 31.1 2.8 54 14-75 17-70 (338)
365 PRK12921 2-dehydropantoate 2-r 27.8 62 0.0014 30.7 3.5 31 16-51 1-31 (305)
366 PF12695 Abhydrolase_5: Alpha/ 27.8 1.4E+02 0.003 24.0 5.2 33 19-51 2-34 (145)
367 PF00289 CPSase_L_chain: Carba 27.8 1.1E+02 0.0024 24.1 4.3 69 298-378 11-89 (110)
368 TIGR02195 heptsyl_trn_II lipop 27.7 3.5E+02 0.0076 25.9 8.7 99 16-151 175-278 (334)
369 PRK06029 3-octaprenyl-4-hydrox 27.6 86 0.0019 27.5 3.9 42 17-59 3-45 (185)
370 PRK13185 chlL protochlorophyll 27.6 1.1E+02 0.0023 28.5 4.9 36 17-52 4-39 (270)
371 PRK06988 putative formyltransf 27.5 3.6E+02 0.0077 25.9 8.5 32 16-52 3-34 (312)
372 TIGR00521 coaBC_dfp phosphopan 27.4 85 0.0018 31.2 4.3 44 15-59 3-46 (390)
373 PRK12315 1-deoxy-D-xylulose-5- 27.4 4.8E+02 0.01 27.6 10.1 53 367-427 524-580 (581)
374 COG1763 MobB Molybdopterin-gua 27.4 1.4E+02 0.003 25.6 5.0 37 17-53 4-40 (161)
375 PRK05579 bifunctional phosphop 27.3 5.1E+02 0.011 25.9 9.8 136 282-428 6-182 (399)
376 TIGR01918 various_sel_PB selen 27.3 88 0.0019 31.2 4.2 30 121-150 75-114 (431)
377 COG1327 Predicted transcriptio 27.3 80 0.0017 26.4 3.4 56 370-427 36-92 (156)
378 PRK07313 phosphopantothenoylcy 27.3 4.2E+02 0.0091 23.1 9.8 48 380-428 112-179 (182)
379 cd08194 Fe-ADH6 Iron-containin 27.3 2E+02 0.0044 28.3 7.1 12 380-391 121-132 (375)
380 TIGR00064 ftsY signal recognit 27.3 1.4E+02 0.0031 28.0 5.6 41 15-55 72-112 (272)
381 COG0569 TrkA K+ transport syst 27.2 78 0.0017 28.7 3.8 31 17-52 2-32 (225)
382 TIGR01917 gly_red_sel_B glycin 27.2 88 0.0019 31.2 4.2 30 121-150 75-114 (431)
383 TIGR00655 PurU formyltetrahydr 27.1 2.8E+02 0.0061 26.1 7.6 115 302-443 150-266 (280)
384 PLN00141 Tic62-NAD(P)-related 27.1 1.8E+02 0.0038 26.6 6.2 34 14-51 16-49 (251)
385 PRK14076 pnk inorganic polypho 27.0 68 0.0015 33.8 3.7 52 362-429 349-404 (569)
386 PF02572 CobA_CobO_BtuR: ATP:c 26.8 2.1E+02 0.0046 24.8 6.1 101 16-132 4-106 (172)
387 PRK08155 acetolactate synthase 26.7 2E+02 0.0044 30.1 7.3 90 289-388 3-109 (564)
388 cd07766 DHQ_Fe-ADH Dehydroquin 26.7 2.4E+02 0.0053 27.1 7.4 29 362-391 79-114 (332)
389 PRK04761 ppnK inorganic polyph 26.5 41 0.00089 31.0 1.8 27 363-389 27-57 (246)
390 TIGR00345 arsA arsenite-activa 26.5 2.7E+02 0.0059 26.2 7.5 26 33-58 3-28 (284)
391 PF00448 SRP54: SRP54-type pro 26.5 1.2E+02 0.0025 26.9 4.7 40 17-56 3-42 (196)
392 PRK04148 hypothetical protein; 26.5 1.3E+02 0.0028 24.9 4.5 31 15-51 17-47 (134)
393 cd02065 B12-binding_like B12 b 26.4 1.1E+02 0.0023 24.3 4.2 34 18-51 2-35 (125)
394 PF00070 Pyr_redox: Pyridine n 26.2 1E+02 0.0023 22.3 3.7 24 31-54 10-33 (80)
395 COG1066 Sms Predicted ATP-depe 26.0 57 0.0012 32.4 2.7 44 15-59 93-136 (456)
396 PRK13869 plasmid-partitioning 25.9 1.1E+02 0.0023 30.7 4.8 40 15-54 120-161 (405)
397 PF01380 SIS: SIS domain SIS d 25.8 1.3E+02 0.0027 24.0 4.5 36 25-60 62-97 (131)
398 PF02702 KdpD: Osmosensitive K 25.8 1.1E+02 0.0024 27.3 4.1 38 15-52 5-42 (211)
399 TIGR00640 acid_CoA_mut_C methy 25.7 1.4E+02 0.003 24.5 4.7 38 15-52 2-39 (132)
400 TIGR00118 acolac_lg acetolacta 25.5 2.1E+02 0.0045 30.0 7.1 27 362-388 65-97 (558)
401 TIGR01501 MthylAspMutase methy 25.5 1.4E+02 0.0031 24.6 4.6 39 16-54 2-40 (134)
402 COG0205 PfkA 6-phosphofructoki 25.5 2.9E+02 0.0063 27.0 7.4 47 273-322 58-104 (347)
403 PRK11914 diacylglycerol kinase 25.5 3E+02 0.0064 26.2 7.7 27 364-390 67-97 (306)
404 TIGR01425 SRP54_euk signal rec 25.5 1.3E+02 0.0028 30.4 5.2 42 15-56 100-141 (429)
405 COG2874 FlaH Predicted ATPases 25.4 60 0.0013 29.2 2.5 37 18-54 31-67 (235)
406 PRK05282 (alpha)-aspartyl dipe 25.3 3.1E+02 0.0067 25.1 7.2 42 273-316 24-65 (233)
407 cd03789 GT1_LPS_heptosyltransf 25.2 1.8E+02 0.0038 27.1 6.0 99 17-151 123-225 (279)
408 COG1435 Tdk Thymidine kinase [ 25.2 4.9E+02 0.011 23.1 9.1 38 18-55 6-44 (201)
409 COG4081 Uncharacterized protei 25.0 1.2E+02 0.0025 24.8 3.7 41 18-58 6-47 (148)
410 PF05225 HTH_psq: helix-turn-h 24.7 86 0.0019 20.2 2.6 26 415-442 1-26 (45)
411 PRK00048 dihydrodipicolinate r 24.6 4.2E+02 0.0091 24.5 8.2 58 351-412 52-115 (257)
412 COG2230 Cfa Cyclopropane fatty 24.6 27 0.00058 32.9 0.2 39 368-407 80-121 (283)
413 PF01372 Melittin: Melittin; 24.5 13 0.00028 20.4 -1.1 17 370-386 1-17 (26)
414 PRK14072 6-phosphofructokinase 24.3 52 0.0011 33.1 2.2 37 356-392 98-143 (416)
415 PF13460 NAD_binding_10: NADH( 24.2 87 0.0019 26.8 3.4 43 24-74 5-47 (183)
416 TIGR00147 lipid kinase, YegS/R 24.1 2.5E+02 0.0055 26.4 6.9 28 363-390 59-92 (293)
417 PF05728 UPF0227: Uncharacteri 23.9 1.7E+02 0.0037 25.6 5.2 29 125-153 62-91 (187)
418 PRK09841 cryptic autophosphory 23.8 9.2E+02 0.02 26.3 11.8 40 15-54 530-571 (726)
419 cd06559 Endonuclease_V Endonuc 23.8 93 0.002 27.9 3.5 29 122-150 93-128 (208)
420 PLN03050 pyridoxine (pyridoxam 23.8 1.3E+02 0.0028 27.8 4.5 33 16-51 61-95 (246)
421 PRK14974 cell division protein 23.7 1.7E+02 0.0037 28.4 5.6 41 15-55 140-180 (336)
422 PRK13181 hisH imidazole glycer 23.7 3.1E+02 0.0067 24.1 6.9 28 285-318 2-29 (199)
423 cd03115 SRP The signal recogni 23.7 1.8E+02 0.0038 24.8 5.3 40 17-56 2-41 (173)
424 cd07038 TPP_PYR_PDC_IPDC_like 23.7 1.1E+02 0.0023 26.1 3.8 28 360-389 60-93 (162)
425 PLN02884 6-phosphofructokinase 23.4 64 0.0014 32.3 2.6 37 356-392 138-183 (411)
426 PRK00005 fmt methionyl-tRNA fo 23.4 5.7E+02 0.012 24.4 9.1 32 16-52 1-32 (309)
427 PRK08199 thiamine pyrophosphat 23.4 3.2E+02 0.007 28.6 8.0 27 362-388 72-104 (557)
428 PRK13055 putative lipid kinase 23.1 2.7E+02 0.0058 27.0 6.9 28 363-390 61-94 (334)
429 PRK10916 ADP-heptose:LPS hepto 23.0 1.9E+02 0.004 28.1 5.8 28 122-151 261-288 (348)
430 PRK05579 bifunctional phosphop 22.9 1.3E+02 0.0028 30.1 4.7 44 15-59 6-49 (399)
431 COG2894 MinD Septum formation 22.7 1.5E+02 0.0032 27.0 4.4 38 17-54 3-42 (272)
432 PRK07525 sulfoacetaldehyde ace 22.6 5.8E+02 0.013 26.9 9.8 27 362-388 69-101 (588)
433 PRK05858 hypothetical protein; 22.5 3.9E+02 0.0084 27.9 8.4 28 359-388 67-100 (542)
434 cd03146 GAT1_Peptidase_E Type 22.5 2.6E+02 0.0056 25.0 6.2 44 273-318 20-66 (212)
435 PRK04946 hypothetical protein; 22.3 70 0.0015 27.9 2.3 58 300-375 111-169 (181)
436 COG0062 Uncharacterized conser 22.2 2.3E+02 0.0049 25.3 5.6 37 15-54 49-87 (203)
437 COG0503 Apt Adenine/guanine ph 22.2 1.1E+02 0.0023 26.8 3.5 29 121-149 52-82 (179)
438 PF01497 Peripla_BP_2: Peripla 22.2 1.1E+02 0.0024 27.4 3.9 32 122-153 60-93 (238)
439 PLN00016 RNA-binding protein; 22.2 1.1E+02 0.0024 30.2 4.1 36 15-52 52-89 (378)
440 PRK11889 flhF flagellar biosyn 22.2 1.9E+02 0.0042 28.9 5.5 41 15-55 241-281 (436)
441 PRK06027 purU formyltetrahydro 22.1 2.8E+02 0.0061 26.2 6.6 114 303-443 156-271 (286)
442 PF06506 PrpR_N: Propionate ca 22.1 1.2E+02 0.0026 26.2 3.8 108 27-152 17-152 (176)
443 COG0305 DnaB Replicative DNA h 22.1 2.8E+02 0.0061 28.0 6.8 125 17-150 198-353 (435)
444 PRK14619 NAD(P)H-dependent gly 22.0 1.2E+02 0.0026 29.0 4.2 33 15-52 4-36 (308)
445 TIGR02329 propionate_PrpR prop 21.9 5.8E+02 0.013 26.6 9.3 109 27-152 37-172 (526)
446 COG3349 Uncharacterized conser 21.8 97 0.0021 31.6 3.5 32 16-52 1-32 (485)
447 PRK06835 DNA replication prote 21.8 1.5E+02 0.0033 28.7 4.8 38 16-53 184-221 (329)
448 KOG2380 Prephenate dehydrogena 21.7 70 0.0015 30.8 2.3 41 15-60 52-92 (480)
449 COG0125 Tmk Thymidylate kinase 21.7 5.7E+02 0.012 22.8 8.1 40 15-54 3-42 (208)
450 PRK08527 acetolactate synthase 21.6 2.9E+02 0.0063 29.0 7.3 27 362-388 67-99 (563)
451 PF00982 Glyco_transf_20: Glyc 21.5 3.4E+02 0.0074 27.9 7.5 105 349-468 359-473 (474)
452 COG0552 FtsY Signal recognitio 21.5 1.5E+02 0.0033 28.6 4.6 60 14-73 138-200 (340)
453 cd01147 HemV-2 Metal binding p 21.5 1.4E+02 0.0031 27.3 4.5 37 106-151 67-106 (262)
454 PF02826 2-Hacid_dh_C: D-isome 21.5 3.9E+02 0.0084 23.0 7.0 102 281-424 35-142 (178)
455 cd01743 GATase1_Anthranilate_S 21.5 2.9E+02 0.0063 23.8 6.2 27 286-318 2-28 (184)
456 PF02780 Transketolase_C: Tran 21.3 1.6E+02 0.0035 23.5 4.2 35 15-51 9-43 (124)
457 PRK08229 2-dehydropantoate 2-r 21.2 1.2E+02 0.0025 29.4 4.0 32 16-52 3-34 (341)
458 CHL00194 ycf39 Ycf39; Provisio 21.2 1.8E+02 0.0038 27.8 5.2 33 16-52 1-33 (317)
459 cd01075 NAD_bind_Leu_Phe_Val_D 21.0 1.3E+02 0.0029 26.6 4.0 30 15-49 28-57 (200)
460 PF05693 Glycogen_syn: Glycoge 21.0 1.7E+02 0.0037 30.8 5.0 72 373-445 485-565 (633)
461 PRK05246 glutathione synthetas 21.0 1.3E+02 0.0027 29.0 4.1 40 16-55 2-44 (316)
462 PRK09219 xanthine phosphoribos 20.9 2.2E+02 0.0047 25.1 5.2 30 121-150 49-80 (189)
463 PRK06718 precorrin-2 dehydroge 20.8 1.4E+02 0.003 26.6 4.0 34 15-53 10-43 (202)
464 PRK13973 thymidylate kinase; P 20.8 6E+02 0.013 22.5 8.9 39 15-53 3-41 (213)
465 COG4394 Uncharacterized protei 20.8 7.3E+02 0.016 23.6 12.1 29 24-52 12-41 (370)
466 TIGR02699 archaeo_AfpA archaeo 20.7 1.1E+02 0.0025 26.4 3.3 34 26-59 9-44 (174)
467 PRK00881 purH bifunctional pho 20.7 1.6E+02 0.0036 30.2 4.9 52 17-79 6-59 (513)
468 PRK00652 lpxK tetraacyldisacch 20.6 1.6E+02 0.0035 28.5 4.6 38 17-54 51-90 (325)
469 PRK03094 hypothetical protein; 20.4 93 0.002 23.0 2.3 20 32-51 10-29 (80)
470 COG2084 MmsB 3-hydroxyisobutyr 20.4 1.4E+02 0.0031 28.2 4.1 31 17-52 2-32 (286)
471 cd05014 SIS_Kpsf KpsF-like pro 20.4 2.9E+02 0.0064 21.9 5.7 36 24-59 55-90 (128)
472 PF02776 TPP_enzyme_N: Thiamin 20.3 2.4E+02 0.0051 24.1 5.3 30 359-390 64-99 (172)
473 cd07037 TPP_PYR_MenD Pyrimidin 20.3 64 0.0014 27.6 1.7 29 359-389 60-94 (162)
474 COG1090 Predicted nucleoside-d 20.3 4.5E+02 0.0098 24.8 7.1 22 33-54 12-33 (297)
475 cd01840 SGNH_hydrolase_yrhL_li 20.2 1.9E+02 0.0042 23.9 4.6 39 282-321 50-88 (150)
476 PLN02496 probable phosphopanto 20.2 1.4E+02 0.003 26.8 3.8 44 15-60 19-62 (209)
477 PF01591 6PF2K: 6-phosphofruct 20.1 2.9E+02 0.0063 25.1 5.9 118 14-155 11-134 (222)
478 TIGR02356 adenyl_thiF thiazole 20.0 3.3E+02 0.0071 24.1 6.3 33 14-51 20-53 (202)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-67 Score=525.15 Aligned_cols=443 Identities=41% Similarity=0.787 Sum_probs=350.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHH
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAI 94 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...... ...++++..+|+++|++.........++..+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~---~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~ 83 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSD---DFTDFQFVTIPESLPESDFKNLGPIEFLHKL 83 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccccc---CCCCeEEEeCCCCCCcccccccCHHHHHHHH
Confidence 5699999999999999999999999999999999999866421111 2247999999988887421122344556656
Q ss_pred HhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccC-CC
Q 012151 95 NGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAY-LP 173 (470)
Q Consensus 95 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~-~p 173 (470)
...+...+.+.++++..... .+++|||+|.+..|+..+|.++|||.+.|+++++.....+.+++....... .|
T Consensus 84 ~~~~~~~~~~~L~~l~~~~~------~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~ 157 (451)
T PLN02410 84 NKECQVSFKDCLGQLVLQQG------NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAP 157 (451)
T ss_pred HHHhHHHHHHHHHHHHhccC------CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCC
Confidence 66677778888877643222 367999999999999999999999999999999988876665433222111 12
Q ss_pred CCCC-CCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCCCeeeec
Q 012151 174 VQDH-QSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIFPIG 252 (470)
Q Consensus 174 ~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~~vG 252 (470)
.... ......+|+++.++..+++.........+...+.... ....++.+++||+.+||..+++.+ +..+++++++||
T Consensus 158 ~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l-~~~~~~~v~~vG 235 (451)
T PLN02410 158 LKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRL-QQQLQIPVYPIG 235 (451)
T ss_pred ccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHH-HhccCCCEEEec
Confidence 1110 1112247888777777777532222223333332222 346788999999999999999998 887767899999
Q ss_pred cCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCC
Q 012151 253 PLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEP 332 (470)
Q Consensus 253 pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~ 332 (470)
|++...+. +.+....+ .++.+||++++++++|||||||....+.+++.+++.+|+.++.+|||+++.+...+.+|...
T Consensus 236 pl~~~~~~-~~~~~~~~-~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~ 313 (451)
T PLN02410 236 PLHLVASA-PTSLLEEN-KSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIES 313 (451)
T ss_pred ccccccCC-Cccccccc-hHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhc
Confidence 99864321 11112222 45889999998899999999999999999999999999999999999998542222233345
Q ss_pred CchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC
Q 012151 333 LPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW 412 (470)
Q Consensus 333 ~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 412 (470)
+|++++++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.+|+|+.++.
T Consensus 314 lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~ 393 (451)
T PLN02410 314 LPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEG 393 (451)
T ss_pred CChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999874699999976
Q ss_pred cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 012151 413 KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILSF 470 (470)
Q Consensus 413 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (470)
.+++++|+++|+++|.+++|++||++|++|++++++++.+||+|.++++++++.++++
T Consensus 394 ~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 394 DLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred cccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 7899999999999998866789999999999999999999999999999999999875
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=3.1e-64 Score=502.15 Aligned_cols=441 Identities=29% Similarity=0.524 Sum_probs=347.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCccccc---cc----CC--CCCeeEEecCCCCCCCcccc
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNY---FS----CN--YPHFDFHSFPDGFSETEASV 84 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~---~~----~~--~~gi~~~~~~~~~~~~~~~~ 84 (470)
.+.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+ +. .. ...+.|..+|+++|.+.+..
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~ 85 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRR 85 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCcccc
Confidence 35799999999999999999999999999999999999865543321 00 00 12367777888887654323
Q ss_pred cCHHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhch
Q 012151 85 EDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYP 164 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~ 164 (470)
.++..++..+...+.+.++++++++.... .+++|||+|.+..|+..+|+++|||.+.|+++++.....+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 86 QDLDLYLPQLELVGKREIPNLVKRYAEQG-------RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHHhccC-------CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 34555666666567778888877764221 24599999999999999999999999999999998888776642
Q ss_pred hhhhccCCCCCCC--CCCcccCCCCCCCCccccCcccc--cCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHh
Q 012151 165 ILRERAYLPVQDH--QSLETPVTEFPPLRVKDIQVLET--MDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAH 240 (470)
Q Consensus 165 ~~~~~~~~p~~~~--~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~ 240 (470)
. ...+.... ......+|++|.++..+++.+.. .....+++.+.+.......++.+++||+.+||..+++.+
T Consensus 159 ~----~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l- 233 (480)
T PLN02555 159 H----GLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYM- 233 (480)
T ss_pred h----cCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH-
Confidence 1 11121110 11223488998888888886432 123344455555555667788999999999999999888
Q ss_pred hccCCCCeeeeccCCCCCCC--CC--CCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEE
Q 012151 241 QKYLSIPIFPIGPLHKCSPA--SS--GSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFL 316 (470)
Q Consensus 241 ~~~~~~~v~~vGpl~~~~~~--~~--~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i 316 (470)
+... +++.|||+...... .. ......+ +++.+||++++++++|||||||+...+.+++.+++.+|+.++.+||
T Consensus 234 ~~~~--~v~~iGPl~~~~~~~~~~~~~~~~~~~-~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~fl 310 (480)
T PLN02555 234 SKLC--PIKPVGPLFKMAKTPNSDVKGDISKPA-DDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFL 310 (480)
T ss_pred hhCC--CEEEeCcccCccccccccccccccccc-hhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEE
Confidence 7643 49999999753211 00 1112233 5699999998888999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhh
Q 012151 317 WVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVN 396 (470)
Q Consensus 317 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n 396 (470)
|++......+....+.+|++++++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.|
T Consensus 311 W~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~N 390 (480)
T PLN02555 311 WVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTD 390 (480)
T ss_pred EEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHH
Confidence 99974321100001248889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhheeEEcC-----C-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 397 ARYVSHFWRVGLHSE-----W-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 397 a~rv~~~~G~G~~l~-----~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
|+++++.+|+|+.+. . .+++++|.++|+++|.+++|+.+|+||++|+++.++++.+||+|.+++++|++++.+
T Consensus 391 a~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 391 AVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred HHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 999988679999993 3 589999999999999887789999999999999999999999999999999999864
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6.6e-64 Score=499.70 Aligned_cols=431 Identities=28% Similarity=0.459 Sum_probs=336.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHH
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAI 94 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
+.||+++|++++||++|++.||+.|+++|+.||+++++.+.+.+.+......+++++.+|++++.+. ..++..++..+
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~~l~~a~ 83 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFFSIENSM 83 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHHHHHHHH
Confidence 5699999999999999999999999999999999999877654443111123799999998765332 12344444455
Q ss_pred HhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCCCC
Q 012151 95 NGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPV 174 (470)
Q Consensus 95 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 174 (470)
...+.+.++++++++... .+++|||+|.+..|+..+|+++|||.+.|+++++.....+.+.+........+.
T Consensus 84 ~~~~~~~l~~ll~~l~~~--------~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 84 ENTMPPQLERLLHKLDED--------GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred HHhchHHHHHHHHHhcCC--------CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 546777777777776321 145899999999999999999999999999998877766555443222221111
Q ss_pred CCCC---CCcccCCCCCCCCccccCcccccC--chhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhcc----CC
Q 012151 175 QDHQ---SLETPVTEFPPLRVKDIQVLETMD--QENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKY----LS 245 (470)
Q Consensus 175 ~~~~---~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~----~~ 245 (470)
.+.. .....+|+++.++..+++...... ....++.+.+.......++.+++||+.+||+.++..+ +.. ..
T Consensus 156 ~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~-~~~~~~~~~ 234 (448)
T PLN02562 156 TGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNH-QASYNNGQN 234 (448)
T ss_pred ccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHH-HhhhccccC
Confidence 1100 011147888778888887643211 2233455555555667788999999999999887765 531 23
Q ss_pred CCeeeeccCCCCCCCC--CCCCCccchhhhhhhcCCCCCCeEEEEEcCccc-ccCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 012151 246 IPIFPIGPLHKCSPAS--SGSLSSQDYQRSISWLDKQTPKSVVYISFGSVI-AINKDGFLEIAWGVANSRMPFLWVVRPG 322 (470)
Q Consensus 246 ~~v~~vGpl~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~-~~~~~~~~~i~~al~~~~~~~i~~~~~~ 322 (470)
++++.|||++...... ....++.+ .++.+||++++++++|||||||+. ..+.++++.++.+|++++.+|||++..+
T Consensus 235 ~~v~~iGpl~~~~~~~~~~~~~~~~~-~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~ 313 (448)
T PLN02562 235 PQILQIGPLHNQEATTITKPSFWEED-MSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV 313 (448)
T ss_pred CCEEEecCcccccccccCCCccccch-HHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 6799999998653210 01123444 557899999888899999999986 5789999999999999999999999653
Q ss_pred CCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHh
Q 012151 323 LVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSH 402 (470)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~ 402 (470)
. .+.+|++++++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++
T Consensus 314 ~------~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~ 387 (448)
T PLN02562 314 W------REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVD 387 (448)
T ss_pred c------hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHH
Confidence 2 1248889999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 403 FWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 403 ~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
.+|+|+.+.. +++++|+++|+++|.| ++||+||+++++++++. .+||+|.+++++|+++++
T Consensus 388 ~~g~g~~~~~-~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 388 VWKIGVRISG-FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HhCceeEeCC-CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 4699988875 8999999999999998 89999999999999887 678999999999999874
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.9e-63 Score=492.50 Aligned_cols=422 Identities=29% Similarity=0.494 Sum_probs=337.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCC-cccccCHHHHHHH
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSET-EASVEDVAVFFTA 93 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~-~~~~~~~~~~~~~ 93 (470)
+.||+++|++++||++|+++||+.|+.+|+.|||++++.+...... ....++++..+|+++|++ .+...+...++..
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~--~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~ 82 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHL--DPSSPISIATISDGYDQGGFSSAGSVPEYLQN 82 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhccc--CCCCCEEEEEcCCCCCCcccccccCHHHHHHH
Confidence 4699999999999999999999999999999999999876544321 012469999999988873 2333356667777
Q ss_pred HHhhcchHHHHHHHHHHhcccCCCCCCCCC-cEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCC
Q 012151 94 INGKCIMPFRDCLAEILMKSKADQNKDSSP-CCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYL 172 (470)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p-Dlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (470)
+...+.+.++++++++... .+| +|||+|.+..|+..+|+++|||.+.|+++++.....+.+ ... ..
T Consensus 83 ~~~~~~~~~~~~l~~~~~~--------~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~--- 149 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQST--------DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NN--- 149 (449)
T ss_pred HHHhhhHHHHHHHHHhhcc--------CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-cc---
Confidence 7767888888888776432 145 999999999999999999999999999988777654432 111 00
Q ss_pred CCCCCCCCcccCCCCCCCCccccCccccc--CchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCCCeee
Q 012151 173 PVQDHQSLETPVTEFPPLRVKDIQVLETM--DQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIFP 250 (470)
Q Consensus 173 p~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~~ 250 (470)
......+++++.++..+++.+... ........+.+.......++.+++||+.+||..+++.+ +.. .+++.
T Consensus 150 -----~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~-~~~--~~v~~ 221 (449)
T PLN02173 150 -----GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELL-SKV--CPVLT 221 (449)
T ss_pred -----CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHH-Hhc--CCeeE
Confidence 012223678887888888764321 22223444444445567788999999999999999888 764 47999
Q ss_pred eccCCCCC-----C-CCCC---CCC--ccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEE
Q 012151 251 IGPLHKCS-----P-ASSG---SLS--SQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVV 319 (470)
Q Consensus 251 vGpl~~~~-----~-~~~~---~~~--~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~ 319 (470)
|||+.... . .... +.+ +.+ +++.+||+.++.+++|||||||+...+.+++.+++.+| .+.+|||++
T Consensus 222 VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvv 298 (449)
T PLN02173 222 IGPTVPSMYLDQQIKSDNDYDLNLFDLKEA-ALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVV 298 (449)
T ss_pred EcccCchhhccccccccccccccccccccc-hHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEE
Confidence 99997421 0 0000 111 223 45899999998899999999999999999999999999 677899999
Q ss_pred cCCCCCCCcccCCCchhHHHHh-cCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHH
Q 012151 320 RPGLVSGAEWVEPLPKGFLEML-DGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNAR 398 (470)
Q Consensus 320 ~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 398 (470)
..+. .+.+|++++++. ++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 299 r~~~------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~ 372 (449)
T PLN02173 299 RASE------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAK 372 (449)
T ss_pred eccc------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHH
Confidence 7531 123888888887 588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhheeEEcCC-----cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 399 YVSHFWRVGLHSEW-----KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 399 rv~~~~G~G~~l~~-----~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
++++.||+|+.+.. .++.++|+++|+++|.+++|+.+|++|++++++.++++.+||+|.++++++++++.
T Consensus 373 ~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 373 YIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 99975699988853 26999999999999998778999999999999999999999999999999999874
No 5
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.6e-63 Score=495.28 Aligned_cols=438 Identities=25% Similarity=0.399 Sum_probs=329.3
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCC-CCCeeEEecC----CCCCCCcccccCH
Q 012151 13 RNGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCN-YPHFDFHSFP----DGFSETEASVEDV 87 (470)
Q Consensus 13 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~-~~gi~~~~~~----~~~~~~~~~~~~~ 87 (470)
..+.||+++|++++||++|++.||+.|++||+.|||++++.+.....+.... ..+++++.+| +++|++.+...+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~ 83 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDV 83 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCccccccc
Confidence 3467999999999999999999999999999999999998776444421111 2368999988 6677654322233
Q ss_pred H----HHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhc
Q 012151 88 A----VFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAY 163 (470)
Q Consensus 88 ~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~ 163 (470)
. .++....+.+.+.++++++++ +++|||+|.+..|+..+|+++|||++.|+++++.....+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~ 151 (472)
T PLN02670 84 PYTKQQLLKKAFDLLEPPLTTFLETS------------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPP 151 (472)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhC------------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhh
Confidence 2 233344444555555555442 689999999999999999999999999999888777765432
Q ss_pred hhhhhccCCCCCCCCCCcccCCCC----C--CCCccccCcccc--cCchhHHHHHHHHHhhhccccEEEEcChHHhhHHH
Q 012151 164 PILRERAYLPVQDHQSLETPVTEF----P--PLRVKDIQVLET--MDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAG 235 (470)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~~~i~~~----~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~ 235 (470)
.........+... ... ..+++. + .++..+++.+.. .........+.+.......++.+++||+.+||..+
T Consensus 152 ~~~~~~~~~~~~~-~~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~ 229 (472)
T PLN02670 152 SSLMEGGDLRSTA-EDF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEW 229 (472)
T ss_pred HhhhhcccCCCcc-ccc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHH
Confidence 2111111111111 111 113332 1 244455554321 11112233333333445678899999999999999
Q ss_pred HHHHhhccCCCCeeeeccCCCC-CCCCCCCCCc-cchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCC
Q 012151 236 LGLAHQKYLSIPIFPIGPLHKC-SPASSGSLSS-QDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRM 313 (470)
Q Consensus 236 ~~~~~~~~~~~~v~~vGpl~~~-~~~~~~~~~~-~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~ 313 (470)
++.+ +..++++++.|||+... .........+ ..|+++.+||++++++++|||||||+...+.+++.+++.+|+.++.
T Consensus 230 l~~l-~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~ 308 (472)
T PLN02670 230 FDLL-SDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSET 308 (472)
T ss_pred HHHH-HHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCC
Confidence 9998 88665689999999752 1110001011 1125699999998889999999999999999999999999999999
Q ss_pred CEEEEEcCCCCCCCcccCCCchhHHHHhcCCceee-eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccc
Q 012151 314 PFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPD 392 (470)
Q Consensus 314 ~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~D 392 (470)
+|||++...........+.+|++++++..+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.|
T Consensus 309 ~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 388 (472)
T PLN02670 309 PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNE 388 (472)
T ss_pred CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhc
Confidence 99999975321110102248999999998888875 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhheeEEcCC-----cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 393 QMVNARYVSHFWRVGLHSEW-----KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 393 Q~~na~rv~~~~G~G~~l~~-----~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
|+.||+++++ +|+|+.++. .+++++|+++|+++|.+++|++||+||+++++.+++. ++..++++.|++.|
T Consensus 389 Q~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~~~~~~l 463 (472)
T PLN02670 389 QGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVDELVHYL 463 (472)
T ss_pred cHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHHHHHHHH
Confidence 9999999999 699999964 3899999999999999877789999999999999998 99999999999998
Q ss_pred HcC
Q 012151 468 LSF 470 (470)
Q Consensus 468 ~~~ 470 (470)
.++
T Consensus 464 ~~~ 466 (472)
T PLN02670 464 REN 466 (472)
T ss_pred HHh
Confidence 764
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.5e-63 Score=493.21 Aligned_cols=434 Identities=32% Similarity=0.531 Sum_probs=332.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCCcccccccCCCCCeeEEecCC----CCCCCcccccCHHH
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILY-SKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPD----GFSETEASVEDVAV 89 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~----~~~~~~~~~~~~~~ 89 (470)
+.||+++|++++||++|++.||+.|+ ++|+.|||++++.+...+........++.+..+|. ++++.. .+...
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~~~~ 81 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AHVVT 81 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---ccHHH
Confidence 46999999999999999999999998 78999999999876544321000123689998884 443111 12222
Q ss_pred HHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhc
Q 012151 90 FFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRER 169 (470)
Q Consensus 90 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 169 (470)
.+......+.+.++++++++. .+|+|||+|.+..|+..+|+++|||++.|+++++..+..+.+.+.....
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~----------~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 82 KIGVIMREAVPTLRSKIAEMH----------QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred HHHHHHHHhHHHHHHHHHhcC----------CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 232333345566666665541 3789999999999999999999999999999988877665544321111
Q ss_pred cCCCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhcc--C---
Q 012151 170 AYLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKY--L--- 244 (470)
Q Consensus 170 ~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~--~--- 244 (470)
.-.+... ......+|+++.++..+++.....+....+..+.+.......++.+++||+.+||..+++.+ +.. +
T Consensus 152 ~~~~~~~-~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l-~~~~~~~~~ 229 (481)
T PLN02992 152 IKEEHTV-QRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSL-QDPKLLGRV 229 (481)
T ss_pred ccccccc-CCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH-hhccccccc
Confidence 0000000 01123478887788888874322233334445555555567788999999999999999887 642 1
Q ss_pred -CCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012151 245 -SIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGL 323 (470)
Q Consensus 245 -~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~ 323 (470)
+++++.|||+...... . ..+ +++.+||++++++++|||||||...++.+++++++.+|+.++.+|||++....
T Consensus 230 ~~~~v~~VGPl~~~~~~---~--~~~-~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~ 303 (481)
T PLN02992 230 ARVPVYPIGPLCRPIQS---S--KTD-HPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPV 303 (481)
T ss_pred cCCceEEecCccCCcCC---C--cch-HHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 2579999999754211 1 233 55999999988899999999999999999999999999999999999996431
Q ss_pred CCC-------------Cc-ccCCCchhHHHHhcCCceee-eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCC
Q 012151 324 VSG-------------AE-WVEPLPKGFLEMLDGRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQP 388 (470)
Q Consensus 324 ~~~-------------~~-~~~~~p~~~~~~~~~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P 388 (470)
..+ .+ ..+.+|++++++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P 383 (481)
T PLN02992 304 DGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWP 383 (481)
T ss_pred ccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecC
Confidence 100 00 01248899999998877665 9999999999999999999999999999999999999999
Q ss_pred CccchhhhHHHHH-hhhheeEEcCC---cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHh--cCCChHHHHHH
Q 012151 389 YLPDQMVNARYVS-HFWRVGLHSEW---KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLR--KGGSSHQSLER 462 (470)
Q Consensus 389 ~~~DQ~~na~rv~-~~~G~G~~l~~---~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~~~ 462 (470)
++.||+.||++++ + +|+|+.++. .++.++|+++|+++|.+++|+.++++++++++.+++++. +||+|.+++++
T Consensus 384 ~~~DQ~~na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~ 462 (481)
T PLN02992 384 LFAEQNMNAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCR 462 (481)
T ss_pred ccchhHHHHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 9999999999995 7 799999965 489999999999999887788999999999999999994 69999999999
Q ss_pred HHHHHHcC
Q 012151 463 LIDHILSF 470 (470)
Q Consensus 463 ~~~~l~~~ 470 (470)
+++.++.+
T Consensus 463 ~v~~~~~~ 470 (481)
T PLN02992 463 VTKECQRF 470 (481)
T ss_pred HHHHHHHH
Confidence 99998753
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.1e-63 Score=493.19 Aligned_cols=429 Identities=28% Similarity=0.484 Sum_probs=332.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHH--HHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHH
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASI--LYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFF 91 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~ 91 (470)
++.||+++|+|++||++|++.||++ |++||+.|||++++.+.+.+.........+++..+|++++++.. .+...++
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~~~~~~~ 84 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--RAPETLL 84 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--cCHHHHH
Confidence 4679999999999999999999999 55999999999999876554432222356888888888876642 2344555
Q ss_pred HHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccC
Q 012151 92 TAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAY 171 (470)
Q Consensus 92 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 171 (470)
..+.+.+.+.+.+.+++ .+|||||+|.+..|+..+|+++|||.+.|+++++..+..+.+.+... ..
T Consensus 85 ~~~~~~~~~~l~~~l~~------------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~ 150 (456)
T PLN02210 85 KSLNKVGAKNLSKIIEE------------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NS 150 (456)
T ss_pred HHHHHhhhHHHHHHHhc------------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CC
Confidence 55555555555555443 27999999999999999999999999999999888877665532211 11
Q ss_pred CCCCCCCCCcccCCCCCCCCccccCcccccCchhHH-HHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCCCeee
Q 012151 172 LPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVY-RFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIFP 250 (470)
Q Consensus 172 ~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~~ 250 (470)
.+..........+|+++.++..+++..........+ ....+.......++.+++||+.++|..+++.+ ++ . +++++
T Consensus 151 ~~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l-~~-~-~~v~~ 227 (456)
T PLN02210 151 FPDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESM-AD-L-KPVIP 227 (456)
T ss_pred CCcccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHH-hh-c-CCEEE
Confidence 121110001124777877788887754322222222 22223434456678999999999999999887 76 3 57999
Q ss_pred eccCCCC----CCCC---C---CCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEc
Q 012151 251 IGPLHKC----SPAS---S---GSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVR 320 (470)
Q Consensus 251 vGpl~~~----~~~~---~---~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~ 320 (470)
|||+... .... . .+.+..+ +++.+|++.++++++|||||||....+.++++.++.+|+.++.+|||+++
T Consensus 228 VGPl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~ 306 (456)
T PLN02210 228 IGPLVSPFLLGDDEEETLDGKNLDMCKSD-DCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIR 306 (456)
T ss_pred EcccCchhhcCcccccccccccccccccc-hHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999742 1000 0 0112334 56899999888899999999999999999999999999999999999997
Q ss_pred CCCCCCCcccCCCchhHHHHh-cCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHH
Q 012151 321 PGLVSGAEWVEPLPKGFLEML-DGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARY 399 (470)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 399 (470)
.+.. ...+..+.++. ++++++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||++
T Consensus 307 ~~~~------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~ 380 (456)
T PLN02210 307 PKEK------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARL 380 (456)
T ss_pred CCcc------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHH
Confidence 4321 11345566665 4788889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhheeEEcCC-----cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 400 VSHFWRVGLHSEW-----KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 400 v~~~~G~G~~l~~-----~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
+++.+|+|+.+.. .+++++|+++|+++|.+++|+.+|+||++|++..++++.+||+|.++++++++.++
T Consensus 381 ~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 381 LVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 9864699999853 48999999999999998778899999999999999999999999999999999875
No 8
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.8e-63 Score=495.38 Aligned_cols=433 Identities=28% Similarity=0.487 Sum_probs=337.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHH
Q 012151 13 RNGRRVILFPLPFQGHINPMLHLASILYSK--GFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVF 90 (470)
Q Consensus 13 ~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 90 (470)
+++.||+++|+|++||++|++.||++|++| ||+|||++++.+...+.+.. ...+++|+.+|++++.+.....+...+
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-~~~gi~fv~lp~~~p~~~~~~~~~~~~ 86 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-KPDNIRFATIPNVIPSELVRAADFPGF 86 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-CCCCEEEEECCCCCCCccccccCHHHH
Confidence 357899999999999999999999999999 99999999998776665411 124899999997666543323345555
Q ss_pred HHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhcc
Q 012151 91 FTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERA 170 (470)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 170 (470)
+..+...+.+.++++++++. .++||||+|.++.|+..+|+++|||+|.++++++..+..+.+.+......
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~----------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~ 156 (459)
T PLN02448 87 LEAVMTKMEAPFEQLLDRLE----------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNG 156 (459)
T ss_pred HHHHHHHhHHHHHHHHHhcC----------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhcc
Confidence 55555456666666666552 26899999999999999999999999999999987776665543322111
Q ss_pred CCCCCCC---CCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCCC
Q 012151 171 YLPVQDH---QSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIP 247 (470)
Q Consensus 171 ~~p~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~ 247 (470)
..|.... ......+|+++.++..+++.+........++.+.........++.+++||+.+||+.+++.+ +..++.+
T Consensus 157 ~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l-~~~~~~~ 235 (459)
T PLN02448 157 HFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDAL-KSKFPFP 235 (459)
T ss_pred CCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHH-HhhcCCc
Confidence 1121110 01111367777777777775433333333444445455556678999999999999999888 8877668
Q ss_pred eeeeccCCCCCCC--CCCC-CC-ccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012151 248 IFPIGPLHKCSPA--SSGS-LS-SQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGL 323 (470)
Q Consensus 248 v~~vGpl~~~~~~--~~~~-~~-~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~ 323 (470)
++.|||+...... .... .. +.+ .++.+|++.++++++|||||||+...+.++++.++.+|+.++.+|||++..+
T Consensus 236 ~~~iGP~~~~~~~~~~~~~~~~~~~~-~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~- 313 (459)
T PLN02448 236 VYPIGPSIPYMELKDNSSSSNNEDNE-PDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE- 313 (459)
T ss_pred eEEecCcccccccCCCccccccccch-hHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc-
Confidence 9999999753110 0000 01 122 3588999988889999999999988889999999999999999999987532
Q ss_pred CCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhh
Q 012151 324 VSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHF 403 (470)
Q Consensus 324 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~ 403 (470)
..++.+..++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.
T Consensus 314 ----------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 383 (459)
T PLN02448 314 ----------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVED 383 (459)
T ss_pred ----------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHH
Confidence 1234444557889999999999999999999999999999999999999999999999999999999875
Q ss_pred hheeEEcCC------cccHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 404 WRVGLHSEW------KLERMEIERAIRRVMVE--AEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 404 ~G~G~~l~~------~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
||+|+.+.. .+++++|+++|+++|.+ ++|+.||++|++|++++++++.+||+|.++++++++.+++
T Consensus 384 ~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 384 WKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred hCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 688888742 47999999999999986 3578999999999999999999999999999999999874
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2e-62 Score=487.00 Aligned_cols=443 Identities=25% Similarity=0.419 Sum_probs=333.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCC-ccccc----ccCCCCCeeEEecCCCCCCCc-ccccC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKG--FSVTIIHTDFNF-SSTNY----FSCNYPHFDFHSFPDGFSETE-ASVED 86 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~-~~~~~----~~~~~~gi~~~~~~~~~~~~~-~~~~~ 86 (470)
+.||+++|++++||++|++.||+.|+++| ..|||++++.+. ..... ......+++|..+|+...... ....+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 82 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQS 82 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccC
Confidence 45999999999999999999999999998 999999998654 21111 111224699999996432111 11234
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhh
Q 012151 87 VAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPIL 166 (470)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~ 166 (470)
...++..+...+.+.+.+.+++++..... .+.+++|||+|.+..|+..+|+++|||++.|+++++.....+.+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 83 VEAYVYDVIEKNIPLVRNIVMDILSSLAL---DGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhcc---CCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 44444444445655555555555432110 001349999999999999999999999999999998877776654432
Q ss_pred hhcc-CCCCCCCCCCcccCCCC-CCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhcc-
Q 012151 167 RERA-YLPVQDHQSLETPVTEF-PPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKY- 243 (470)
Q Consensus 167 ~~~~-~~p~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~- 243 (470)
.... ..+... ......+|++ +.++..+++...... .. +..+.+.......++.+++||+++||++++..+ +..
T Consensus 160 ~~~~~~~~~~~-~~~~~~vPgl~~~l~~~dlp~~~~~~-~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~-~~~~ 235 (468)
T PLN02207 160 HSKDTSVFVRN-SEEMLSIPGFVNPVPANVLPSALFVE-DG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHF-LDEQ 235 (468)
T ss_pred cccccccCcCC-CCCeEECCCCCCCCChHHCcchhcCC-cc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH-Hhcc
Confidence 1111 011101 0111347888 578888888643211 11 333334444567789999999999999988877 652
Q ss_pred CCCCeeeeccCCCCCCCCCC-CCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 012151 244 LSIPIFPIGPLHKCSPASSG-SLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPG 322 (470)
Q Consensus 244 ~~~~v~~vGpl~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~ 322 (470)
..++++.|||++........ .....+ +++.+||++++++++|||||||....+.+++++++.+|+.++++|||+++..
T Consensus 236 ~~p~v~~VGPl~~~~~~~~~~~~~~~~-~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~ 314 (468)
T PLN02207 236 NYPSVYAVGPIFDLKAQPHPEQDLARR-DELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTE 314 (468)
T ss_pred CCCcEEEecCCcccccCCCCccccchh-hHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 22679999999864321000 011122 4599999998889999999999999999999999999999999999999853
Q ss_pred CCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHh
Q 012151 323 LVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSH 402 (470)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~ 402 (470)
.... .+.+|++++++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++
T Consensus 315 ~~~~---~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~ 391 (468)
T PLN02207 315 EVTN---DDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVK 391 (468)
T ss_pred Cccc---cccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHH
Confidence 2111 1238899999999999999999999999999999999999999999999999999999999999999998666
Q ss_pred hhheeEEcC------C--cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 403 FWRVGLHSE------W--KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 403 ~~G~G~~l~------~--~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
.+|+|+.+. . .+++++|+++|+++|.+ ++++||+||++|++.+++++.+||+|.+++++++++++.
T Consensus 392 ~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 392 ELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 469999662 1 35999999999999973 348999999999999999999999999999999999864
No 10
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.3e-62 Score=490.52 Aligned_cols=442 Identities=26% Similarity=0.451 Sum_probs=330.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecC----CCCCCCcccccCH--
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFP----DGFSETEASVEDV-- 87 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~----~~~~~~~~~~~~~-- 87 (470)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.+.+.+........++++..+| +++|.+.+...++
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~ 87 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLPP 87 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcch
Confidence 5789999999999999999999999999999999999998765554321122467777654 2455443322221
Q ss_pred --HHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchh
Q 012151 88 --AVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPI 165 (470)
Q Consensus 88 --~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~ 165 (470)
...+......+.+.+.+.+++. . .+|+|||+|.+..|+..+|+++|||++.|+++++..+..+.+...
T Consensus 88 ~~~~~~~~a~~~~~~~~~~~l~~~----~------~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 88 SGFPLMIHALGELYAPLLSWFRSH----P------SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHhC----C------CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 1222223333444444544442 1 368999999999999999999999999999999999888776432
Q ss_pred hhhccCCCCCCCCCC-cccCCCCCCCCccccCcccc--cCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhc
Q 012151 166 LRERAYLPVQDHQSL-ETPVTEFPPLRVKDIQVLET--MDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQK 242 (470)
Q Consensus 166 ~~~~~~~p~~~~~~~-~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~ 242 (470)
..+....+....... ...+|+++.++..+++.... ...+.....+.+.......++.+++||+.+||..++..+ +.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~-~~ 236 (477)
T PLN02863 158 EMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHL-KK 236 (477)
T ss_pred cccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHH-Hh
Confidence 110000000000111 11367877788888875422 112223334444444455677899999999999999998 88
Q ss_pred cCC-CCeeeeccCCCCCCCC------CCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCE
Q 012151 243 YLS-IPIFPIGPLHKCSPAS------SGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPF 315 (470)
Q Consensus 243 ~~~-~~v~~vGpl~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~ 315 (470)
.++ ++++.|||+....... ..+....+ +++.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~-~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~f 315 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSV-DDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHF 315 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccH-HHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcE
Confidence 665 5799999997532100 00011123 569999999888999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCcccCCCchhHHHHhcCCce-eeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchh
Q 012151 316 LWVVRPGLVSGAEWVEPLPKGFLEMLDGRGC-IVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQM 394 (470)
Q Consensus 316 i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~ 394 (470)
||+++........ ...+|++++++..++.. +.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+
T Consensus 316 lw~~~~~~~~~~~-~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~ 394 (477)
T PLN02863 316 IWCVKEPVNEESD-YSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQF 394 (477)
T ss_pred EEEECCCcccccc-hhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccch
Confidence 9999754321111 12488999888765554 459999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhheeEEcCC----cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 012151 395 VNARYVSHFWRVGLHSEW----KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILSF 470 (470)
Q Consensus 395 ~na~rv~~~~G~G~~l~~----~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (470)
.||+++++.+|+|+++.. .++.+++.++|+++|.+ ++.||+||+++++.+++++.+||+|.++++++++.++++
T Consensus 395 ~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 395 VNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred hhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 999997643899999932 36899999999999942 289999999999999999999999999999999998763
No 11
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.8e-61 Score=479.62 Aligned_cols=421 Identities=23% Similarity=0.379 Sum_probs=313.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEec--C--CCCCCCcccccCHHHH
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSF--P--DGFSETEASVEDVAVF 90 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~--~--~~~~~~~~~~~~~~~~ 90 (470)
+.||+++|++++||++|++.||+.|+++||+|||++++.+...+.+.+....++.+..+ + ++++.+.....++...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~ 83 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPIS 83 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhHH
Confidence 67999999999999999999999999999999999998776655432111124556554 3 4566654322223222
Q ss_pred HHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhcc
Q 012151 91 FTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERA 170 (470)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 170 (470)
+..+.......+.+.++++.+. .++||||+| +..|+..+|+++|||++.|+++++.... +.+.+. .
T Consensus 84 l~~~~~~~~~~~~~~l~~~L~~--------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~ 149 (442)
T PLN02208 84 MDNLLSEALDLTRDQVEAAVRA--------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----G 149 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----c
Confidence 2222212222333334444332 378999999 5789999999999999999999887543 333221 0
Q ss_pred CCCCCCCCCCcccCCCCCC----CCccccCcccccCchhHHHHHH-HHHhhhccccEEEEcChHHhhHHHHHHHhhccCC
Q 012151 171 YLPVQDHQSLETPVTEFPP----LRVKDIQVLETMDQENVYRFVS-AIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLS 245 (470)
Q Consensus 171 ~~p~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~ 245 (470)
. ....++++|. ++..+++.+. .....+..+. +.......++.+++||+.+||..+++.+ +..++
T Consensus 150 ~--------~~~~~pglp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~-~~~~~ 218 (442)
T PLN02208 150 K--------LGVPPPGYPSSKVLFRENDAHALA--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYI-SRQYH 218 (442)
T ss_pred c--------cCCCCCCCCCcccccCHHHcCccc--ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHH-HhhcC
Confidence 0 0012355543 3455555331 1122233332 2334556789999999999999999888 77666
Q ss_pred CCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 012151 246 IPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVS 325 (470)
Q Consensus 246 ~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~ 325 (470)
++++.|||++...+. ....+ +++.+||+.++++++|||||||...++.+++.+++.+++..+.+++|+++.+...
T Consensus 219 ~~v~~vGpl~~~~~~--~~~~~---~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 219 KKVLLTGPMFPEPDT--SKPLE---EQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred CCEEEEeecccCcCC--CCCCH---HHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Confidence 789999999865321 12233 4499999998889999999999999899999999999988899999999754211
Q ss_pred CCcccCCCchhHHHHhcCCceee-eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhh
Q 012151 326 GAEWVEPLPKGFLEMLDGRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFW 404 (470)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~ 404 (470)
. ...+.+|++++++..++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.+
T Consensus 294 ~-~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~ 372 (442)
T PLN02208 294 S-TVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEF 372 (442)
T ss_pred c-chhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHh
Confidence 1 012348999999987655555 99999999999999999999999999999999999999999999999999876647
Q ss_pred heeEEcCC-c---ccHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 012151 405 RVGLHSEW-K---LERMEIERAIRRVMVEA--EGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILSF 470 (470)
Q Consensus 405 G~G~~l~~-~---~~~~~l~~ai~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (470)
|+|+.++. + +++++|+++|+++|+++ +|+.+|++++++++.+.+ +|+|.++++++++.++++
T Consensus 373 g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 373 EVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQEY 440 (442)
T ss_pred ceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHh
Confidence 99999976 3 89999999999999763 378899999999999855 489999999999999764
No 12
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.9e-61 Score=477.80 Aligned_cols=428 Identities=28% Similarity=0.445 Sum_probs=332.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCC-Ccc-cccccCCCCCeeEEecCCCCCCCcc-cccCHHHH
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYS-KGFSVTIIHTDFN-FSS-TNYFSCNYPHFDFHSFPDGFSETEA-SVEDVAVF 90 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~-~~~-~~~~~~~~~gi~~~~~~~~~~~~~~-~~~~~~~~ 90 (470)
+.||+++|++++||++|++.||+.|++ +|+.|||++++.+ .+. .... ....+++|+.++++++.+.. ...+...+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~-~~~~~i~~~~i~dglp~g~~~~~~~~~~~ 81 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH-NNVENLSFLTFSDGFDDGVISNTDDVQNR 81 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC-CCCCCEEEEEcCCCCCCccccccccHHHH
Confidence 359999999999999999999999996 7999999999853 221 1110 01236999999988877542 23355556
Q ss_pred HHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhcc
Q 012151 91 FTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERA 170 (470)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 170 (470)
+..+...+.+.+.++++++.... .+++|||+|.+..|+..+|+++|||.+.|+++++.....+.+.....
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~-------~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~--- 151 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGD-------SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN--- 151 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccC-------CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC---
Confidence 66677778888888888764321 24699999999999999999999999999999998887766533110
Q ss_pred CCCCCCCCCCcccCCCCCCCCccccCccccc--CchhHHHHHHHHHhhhc--cccEEEEcChHHhhHHHHHHHhhccCCC
Q 012151 171 YLPVQDHQSLETPVTEFPPLRVKDIQVLETM--DQENVYRFVSAIDTQIM--ASSGVIWNSYRDLEQAGLGLAHQKYLSI 246 (470)
Q Consensus 171 ~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~p~~~~~~~~~~~~ 246 (470)
+ ....+|+++.++..+++.+... ....+.+.+.+..+... .++.+++||+.+||..+++.+ +. .
T Consensus 152 -----~---~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l-~~---~ 219 (455)
T PLN02152 152 -----N---SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAI-PN---I 219 (455)
T ss_pred -----C---CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhh-hc---C
Confidence 0 1124788877888888765321 12222333333333322 246899999999999998887 65 3
Q ss_pred CeeeeccCCCCCC--CCC-CC--C-CccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEc
Q 012151 247 PIFPIGPLHKCSP--ASS-GS--L-SSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVR 320 (470)
Q Consensus 247 ~v~~vGpl~~~~~--~~~-~~--~-~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~ 320 (470)
+++.|||+..... ... .. . ...+ .++.+||++++.+++|||||||+..++.+++++++.+|+.++.+|||++.
T Consensus 220 ~v~~VGPL~~~~~~~~~~~~~~~~~~~~~-~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r 298 (455)
T PLN02152 220 EMVAVGPLLPAEIFTGSESGKDLSVRDQS-SSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVIT 298 (455)
T ss_pred CEEEEcccCccccccccccCccccccccc-hHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 6999999975321 100 01 1 1223 46999999988899999999999999999999999999999999999997
Q ss_pred CCCCC-----CC-cccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchh
Q 012151 321 PGLVS-----GA-EWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQM 394 (470)
Q Consensus 321 ~~~~~-----~~-~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~ 394 (470)
.+... +. .....+|++++++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 378 (455)
T PLN02152 299 DKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQP 378 (455)
T ss_pred cCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccch
Confidence 53211 00 0001357899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhheeEEcC--C--cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 395 VNARYVSHFWRVGLHSE--W--KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 395 ~na~rv~~~~G~G~~l~--~--~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
.||+++++.+|+|+.+. . .+++++|+++|+++|+| ++..||+||++|++++++++.+||+|.++++++++++
T Consensus 379 ~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 379 ANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999988456666653 2 36999999999999985 3467999999999999999999999999999999986
No 13
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.1e-61 Score=482.44 Aligned_cols=439 Identities=27% Similarity=0.460 Sum_probs=324.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccC----CCCCeeEEecC-----CCCCCCcccc
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSC----NYPHFDFHSFP-----DGFSETEASV 84 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~----~~~gi~~~~~~-----~~~~~~~~~~ 84 (470)
++.||+++|++++||++|++.||+.|+++|+.|||++++.+......... ....++|+.+| +++|++.+..
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 36799999999999999999999999999999999999876544332110 11248999987 5777654322
Q ss_pred cCHH--HHHHH---HHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHH
Q 012151 85 EDVA--VFFTA---INGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLA 159 (470)
Q Consensus 85 ~~~~--~~~~~---~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~ 159 (470)
.++. .++.. ....+.+.+++++++. . .+|+|||+|.+..|+..+|+++|||.+.|++++++....
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~------~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~ 156 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQA----K------PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLS 156 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhc----C------CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHH
Confidence 2111 22222 2223444444444332 1 368999999999999999999999999999998877765
Q ss_pred HHhchhhhhccCCCCCCCCCCcccCCCCCC---CCccccCcccccCchhHHHHHH-HHHhhhccccEEEEcChHHhhHHH
Q 012151 160 FTAYPILRERAYLPVQDHQSLETPVTEFPP---LRVKDIQVLETMDQENVYRFVS-AIDTQIMASSGVIWNSYRDLEQAG 235 (470)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~p~ 235 (470)
...+... .+ ..+... ......+|+++. ++..+++...... .....+. ........++.+++||+.+||+.+
T Consensus 157 ~~~~~~~-~~-~~~~~~-~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (491)
T PLN02534 157 SHNIRLH-NA-HLSVSS-DSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGC 231 (491)
T ss_pred HHHHHHh-cc-cccCCC-CCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHH
Confidence 4332111 11 111111 111234677753 6666666432111 1122222 222233456789999999999999
Q ss_pred HHHHhhccCCCCeeeeccCCCCCCCC--C---CCCCc-cchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHH
Q 012151 236 LGLAHQKYLSIPIFPIGPLHKCSPAS--S---GSLSS-QDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVA 309 (470)
Q Consensus 236 ~~~~~~~~~~~~v~~vGpl~~~~~~~--~---~~~~~-~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~ 309 (470)
++.+ +..++++++.|||+....... . ..... ++ +++.+||++++++++|||||||.....++++.+++.+|+
T Consensus 232 l~~l-~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~-~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~ 309 (491)
T PLN02534 232 AEAY-EKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDE-TQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLE 309 (491)
T ss_pred HHHH-HhhcCCcEEEECcccccccccccccccCCccccch-HHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 9998 887767899999997531100 0 00011 22 458999999988999999999999999999999999999
Q ss_pred hCCCCEEEEEcCCCCCCCcccCCCchhHHHHhc-CCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCC
Q 012151 310 NSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLD-GRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQP 388 (470)
Q Consensus 310 ~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P 388 (470)
.++.+|||++..+..........+|+++.++.. .++++.+|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 310 ~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P 389 (491)
T PLN02534 310 ASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWP 389 (491)
T ss_pred hCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecc
Confidence 999999999974321110001136889987754 5555669999999999999999999999999999999999999999
Q ss_pred CccchhhhHHHHHhhhheeEEcC-------------C-cccHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHhc
Q 012151 389 YLPDQMVNARYVSHFWRVGLHSE-------------W-KLERMEIERAIRRVMV--EAEGQEMRARIMHLKEKVDFCLRK 452 (470)
Q Consensus 389 ~~~DQ~~na~rv~~~~G~G~~l~-------------~-~~~~~~l~~ai~~vl~--~~~~~~~~~~a~~l~~~~~~~~~~ 452 (470)
++.||+.||+++++.||+|+.+. . .+++++|+++|+++|. +++|+.+|+||++|++++++++.+
T Consensus 390 ~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~ 469 (491)
T PLN02534 390 LFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMEL 469 (491)
T ss_pred ccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999986699999873 1 2789999999999997 456789999999999999999999
Q ss_pred CCChHHHHHHHHHHHHc
Q 012151 453 GGSSHQSLERLIDHILS 469 (470)
Q Consensus 453 ~~~~~~~~~~~~~~l~~ 469 (470)
||+|.+++++|++++++
T Consensus 470 GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 470 GGSSHINLSILIQDVLK 486 (491)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 99999999999999864
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.5e-61 Score=486.57 Aligned_cols=438 Identities=28% Similarity=0.449 Sum_probs=330.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCCcc-------cccccCC-CCCeeEEecCCCCCCCcccc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKG--FSVTIIHTDFNFSS-------TNYFSCN-YPHFDFHSFPDGFSETEASV 84 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~~~-------~~~~~~~-~~gi~~~~~~~~~~~~~~~~ 84 (470)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+... +...... ..+++++.+|++.+.+...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~- 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTED- 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccc-
Confidence 46999999999999999999999999998 88999999866431 1111001 2369999999765432111
Q ss_pred cCHHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCC-CcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhc
Q 012151 85 EDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSS-PCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAY 163 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~-pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~ 163 (470)
. .+..+...+...+++.++++...... ...+ ++|||+|.+..|+..+|+++|||++.|+++++..+..+.+.
T Consensus 81 ---~-~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~ 153 (481)
T PLN02554 81 ---P-TFQSYIDNQKPKVRDAVAKLVDDSST---PSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHV 153 (481)
T ss_pred ---h-HHHHHHHHHHHHHHHHHHHHHhhhcc---CCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhh
Confidence 1 22223334556666666666432100 0013 48999999999999999999999999999999888887765
Q ss_pred hhhhhccCCCCC--CCCCCcccCCCCC-CCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHh
Q 012151 164 PILRERAYLPVQ--DHQSLETPVTEFP-PLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAH 240 (470)
Q Consensus 164 ~~~~~~~~~p~~--~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~ 240 (470)
+......-.+.. ........+|+++ +++..+++..... ..+...+.+.......++.+++||+.+||..+...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l- 230 (481)
T PLN02554 154 QMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFF- 230 (481)
T ss_pred hhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH-
Confidence 443211101111 1011112377874 6777777754322 133444445555667789999999999999888777
Q ss_pred hcc--CCCCeeeeccCC-CCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEE
Q 012151 241 QKY--LSIPIFPIGPLH-KCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLW 317 (470)
Q Consensus 241 ~~~--~~~~v~~vGpl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~ 317 (470)
... ..++++.|||+. ...+. .....+.+ +++.+||++++++++|||||||+...+.+++..++.+|+.++.+|||
T Consensus 231 ~~~~~~~~~v~~vGpl~~~~~~~-~~~~~~~~-~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 231 SGSSGDLPPVYPVGPVLHLENSG-DDSKDEKQ-SEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred HhcccCCCCEEEeCCCccccccc-cccccccc-hHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 652 226799999994 33211 00001222 45999999988889999999999889999999999999999999999
Q ss_pred EEcCCCCC------C--CcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCC
Q 012151 318 VVRPGLVS------G--AEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPY 389 (470)
Q Consensus 318 ~~~~~~~~------~--~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~ 389 (470)
+++..... + .+..+.+|++++++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~ 388 (481)
T PLN02554 309 SLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPL 388 (481)
T ss_pred EEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCc
Confidence 99753210 0 000123699999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhH-HHHHhhhheeEEcC------------CcccHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHhcCCC
Q 012151 390 LPDQMVNA-RYVSHFWRVGLHSE------------WKLERMEIERAIRRVMV-EAEGQEMRARIMHLKEKVDFCLRKGGS 455 (470)
Q Consensus 390 ~~DQ~~na-~rv~~~~G~G~~l~------------~~~~~~~l~~ai~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~~~ 455 (470)
++||+.|| .++++ +|+|+.++ ..+++++|+++|+++|+ | ++||+||+++++++++++.+||+
T Consensus 389 ~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGs 464 (481)
T PLN02554 389 YAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGS 464 (481)
T ss_pred cccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCh
Confidence 99999999 55778 79999985 15899999999999997 6 89999999999999999999999
Q ss_pred hHHHHHHHHHHHHc
Q 012151 456 SHQSLERLIDHILS 469 (470)
Q Consensus 456 ~~~~~~~~~~~l~~ 469 (470)
|.+++++++++++.
T Consensus 465 s~~~l~~lv~~~~~ 478 (481)
T PLN02554 465 SHTALKKFIQDVTK 478 (481)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 15
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.9e-61 Score=483.22 Aligned_cols=438 Identities=29% Similarity=0.432 Sum_probs=335.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEeCCCCCc----cccc-cc---CCCCCeeEEecCCCCCCCcc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKG----FSVTIIHTDFNFS----STNY-FS---CNYPHFDFHSFPDGFSETEA 82 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~V~~~~~~~~~~----~~~~-~~---~~~~gi~~~~~~~~~~~~~~ 82 (470)
+.||+++|++++||++|++.||+.|+.+| +.|||++++.... .+.. +. ....++.+..+|+..++..
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~- 81 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD- 81 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc-
Confidence 45999999999999999999999999997 7999999875422 1111 00 0112699999996643211
Q ss_pred cccCHHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHh
Q 012151 83 SVEDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTA 162 (470)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~ 162 (470)
..+...++..+...+.+.+++.++++. .+++|||+|.+..|+..+|+++|||++.|+++++.....+.+
T Consensus 82 -~e~~~~~~~~~~~~~~~~l~~~L~~l~----------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 150 (480)
T PLN00164 82 -AAGVEEFISRYIQLHAPHVRAAIAGLS----------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLR 150 (480)
T ss_pred -cccHHHHHHHHHHhhhHHHHHHHHhcC----------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhh
Confidence 123334555555566777777766551 256999999999999999999999999999999988877766
Q ss_pred chhhhhccCCCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhc
Q 012151 163 YPILRERAYLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQK 242 (470)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~ 242 (470)
.+......-.+..+ ......+|+++.++..+++.....+.+..+..+....+....++.+++||+.+||..++..+ +.
T Consensus 151 ~~~~~~~~~~~~~~-~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~-~~ 228 (480)
T PLN00164 151 LPALDEEVAVEFEE-MEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAI-AD 228 (480)
T ss_pred hhhhcccccCcccc-cCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHH-Hh
Confidence 54321111001111 00112378888888888885432222222333333345567788999999999999999888 76
Q ss_pred cC------CCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEE
Q 012151 243 YL------SIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFL 316 (470)
Q Consensus 243 ~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i 316 (470)
.. .++++.|||+....+. ....+.+ +++.+||++++++++|||||||+...+.+++.+++.+|+.++.+||
T Consensus 229 ~~~~~~~~~~~v~~vGPl~~~~~~--~~~~~~~-~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~fl 305 (480)
T PLN00164 229 GRCTPGRPAPTVYPIGPVISLAFT--PPAEQPP-HECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFL 305 (480)
T ss_pred ccccccCCCCceEEeCCCcccccc--CCCccch-HHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 42 1479999999743211 1112334 5699999999889999999999988999999999999999999999
Q ss_pred EEEcCCCCCC------CcccCCCchhHHHHhcCCceee-eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCC
Q 012151 317 WVVRPGLVSG------AEWVEPLPKGFLEMLDGRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPY 389 (470)
Q Consensus 317 ~~~~~~~~~~------~~~~~~~p~~~~~~~~~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~ 389 (470)
|++......+ .+..+.+|++++++..+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 306 Wv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~ 385 (480)
T PLN00164 306 WVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPL 385 (480)
T ss_pred EEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCc
Confidence 9998543211 0111248899999988888777 99999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHhhhheeEEcCC------cccHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 012151 390 LPDQMVNARYVSHFWRVGLHSEW------KLERMEIERAIRRVMVEA--EGQEMRARIMHLKEKVDFCLRKGGSSHQSLE 461 (470)
Q Consensus 390 ~~DQ~~na~rv~~~~G~G~~l~~------~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 461 (470)
++||+.||+++++.+|+|+.+.. .+++++|+++|+++|.++ +|+.+|++|++|++++++++.+||+|.++++
T Consensus 386 ~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~ 465 (480)
T PLN00164 386 YAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQ 465 (480)
T ss_pred cccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999887543799999852 269999999999999863 4789999999999999999999999999999
Q ss_pred HHHHHHHc
Q 012151 462 RLIDHILS 469 (470)
Q Consensus 462 ~~~~~l~~ 469 (470)
++++.+++
T Consensus 466 ~~v~~~~~ 473 (480)
T PLN00164 466 RLAREIRH 473 (480)
T ss_pred HHHHHHHh
Confidence 99999874
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.8e-61 Score=485.89 Aligned_cols=440 Identities=29% Similarity=0.501 Sum_probs=323.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCC----CC----CeeEEecC---CCCCCCcc
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCN----YP----HFDFHSFP---DGFSETEA 82 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~----~~----gi~~~~~~---~~~~~~~~ 82 (470)
++.||+++|+|++||++|++.||+.|++|||+|||++++.+...+.+.+.. .. .+.+.++| +++|.+.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 467999999999999999999999999999999999999776544431110 11 45556666 45665432
Q ss_pred ccc--------CHHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccH
Q 012151 83 SVE--------DVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGV 154 (470)
Q Consensus 83 ~~~--------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~ 154 (470)
... +...++..+. .....+.+.++++.+. .+|||||+|.++.|+..+|+++|||++.|+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~--------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a 154 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET--------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGY 154 (482)
T ss_pred cccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc--------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccH
Confidence 211 1223333333 2334455555665543 3789999999999999999999999999999888
Q ss_pred HHHHHHHhchhhhhccCCCCCCCCCCcccCCCCC---CCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHh
Q 012151 155 SGFLAFTAYPILRERAYLPVQDHQSLETPVTEFP---PLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDL 231 (470)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l 231 (470)
+............+....+... ....+++++ .++..+++.. .....+.+.+....+....++.+++||+.+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~l 229 (482)
T PLN03007 155 FSLCASYCIRVHKPQKKVASSS---EPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYEL 229 (482)
T ss_pred HHHHHHHHHHhcccccccCCCC---ceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHH
Confidence 7766554322111111111100 111256664 2333333321 1222234445555556777889999999999
Q ss_pred hHHHHHHHhhccCCCCeeeeccCCCCCCCC-----CCCCCc-cchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHH
Q 012151 232 EQAGLGLAHQKYLSIPIFPIGPLHKCSPAS-----SGSLSS-QDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIA 305 (470)
Q Consensus 232 e~p~~~~~~~~~~~~~v~~vGpl~~~~~~~-----~~~~~~-~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~ 305 (470)
|.++++.+ ++..+.++++|||+....... .....+ .+ +++.+||+.++++++|||||||+...+.+++..++
T Consensus 230 e~~~~~~~-~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~-~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~ 307 (482)
T PLN03007 230 ESAYADFY-KSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDE-QECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIA 307 (482)
T ss_pred HHHHHHHH-HhccCCCEEEEccccccccccccccccCCccccch-hHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHH
Confidence 99988888 776656799999986432110 001111 12 45899999988899999999999888899999999
Q ss_pred HHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhc-CCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCce
Q 012151 306 WGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLD-GRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPM 384 (470)
Q Consensus 306 ~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~ 384 (470)
.+|+.++.+|||+++.+....+. .+.+|++++++.. .|+++.+|+||.+||+|+++++||||||+||++||+++||||
T Consensus 308 ~~l~~~~~~flw~~~~~~~~~~~-~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~ 386 (482)
T PLN03007 308 AGLEGSGQNFIWVVRKNENQGEK-EEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPM 386 (482)
T ss_pred HHHHHCCCCEEEEEecCCcccch-hhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCe
Confidence 99999999999999864211111 1248889888765 455566999999999999999999999999999999999999
Q ss_pred ecCCCccchhhhHHHHHhhhheeEEc--------CC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCC
Q 012151 385 ICQPYLPDQMVNARYVSHFWRVGLHS--------EW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGS 455 (470)
Q Consensus 385 v~~P~~~DQ~~na~rv~~~~G~G~~l--------~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~ 455 (470)
|++|+++||+.||+++++.+++|+.+ +. .+++++|+++|+++|.+++|+.||+||++|++.+++++.+||+
T Consensus 387 v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGs 466 (482)
T PLN03007 387 VTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGS 466 (482)
T ss_pred eeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999887434555443 33 5899999999999999877789999999999999999999999
Q ss_pred hHHHHHHHHHHHHcC
Q 012151 456 SHQSLERLIDHILSF 470 (470)
Q Consensus 456 ~~~~~~~~~~~l~~~ 470 (470)
|.++++++++.+.++
T Consensus 467 S~~~l~~~v~~~~~~ 481 (482)
T PLN03007 467 SFNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 17
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6e-61 Score=474.45 Aligned_cols=436 Identities=25% Similarity=0.407 Sum_probs=330.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCCccc--cc-ccC--CCCCeeEEecCCCCCCCc-ccccCH
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSK-GFSVTIIHTDFNFSST--NY-FSC--NYPHFDFHSFPDGFSETE-ASVEDV 87 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~~--~~-~~~--~~~gi~~~~~~~~~~~~~-~~~~~~ 87 (470)
+.||+++|++++||++|++.||+.|+++ |..|||+++....... .. ... ...++++..+|.....+. ....+.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 4599999999999999999999999987 9999999887544322 11 000 012599999984332221 000133
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCC-eEEEecccHHHHHHHHhchhh
Q 012151 88 AVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLP-TIVLQTCGVSGFLAFTAYPIL 166 (470)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP-~v~~~~~~~~~~~~~~~~~~~ 166 (470)
...+....+.+.+.++++++++. .+|+|||+|.+..|+..+|+++||| .+.++++.+.....+.+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~----------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~ 152 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMK----------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVL 152 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcC----------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhh
Confidence 33334444466777777776653 2689999999999999999999999 588888877776565554432
Q ss_pred hhccCCCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccC--
Q 012151 167 RERAYLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYL-- 244 (470)
Q Consensus 167 ~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~-- 244 (470)
....-....+ ......+|+++.++..+++.....+....+..+.+.......++.+++||+.+||..++..+ +..+
T Consensus 153 ~~~~~~~~~~-~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l-~~~~~~ 230 (470)
T PLN03015 153 DTVVEGEYVD-IKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAAL-REDMEL 230 (470)
T ss_pred hcccccccCC-CCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH-Hhhccc
Confidence 1110000001 01112478888899998885432222222333334444577899999999999999999888 7642
Q ss_pred ----CCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEc
Q 012151 245 ----SIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVR 320 (470)
Q Consensus 245 ----~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~ 320 (470)
+++++.|||+..... ....+ +++.+||++++++++|||||||....+.+++.+++.+|+.++.+|||++.
T Consensus 231 ~~~~~~~v~~VGPl~~~~~-----~~~~~-~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r 304 (470)
T PLN03015 231 NRVMKVPVYPIGPIVRTNV-----HVEKR-NSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLR 304 (470)
T ss_pred ccccCCceEEecCCCCCcc-----cccch-HHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 256999999984311 11122 45999999998899999999999999999999999999999999999997
Q ss_pred CCCC-------CCCcccCCCchhHHHHhcCCceee-eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccc
Q 012151 321 PGLV-------SGAEWVEPLPKGFLEMLDGRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPD 392 (470)
Q Consensus 321 ~~~~-------~~~~~~~~~p~~~~~~~~~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~D 392 (470)
.+.. ..++..+.+|++++++..+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~D 384 (470)
T PLN03015 305 RPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAE 384 (470)
T ss_pred cCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccc
Confidence 4311 000012248999999999888765 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhheeEEcC----C-cccHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012151 393 QMVNARYVSHFWRVGLHSE----W-KLERMEIERAIRRVMVE--AEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLID 465 (470)
Q Consensus 393 Q~~na~rv~~~~G~G~~l~----~-~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
|+.||+++++.+|+|+.+. . .+++++|+++|+++|.+ ++|+.+|+||++|+++.++++.+||+|.++++++++
T Consensus 385 Q~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~ 464 (470)
T PLN03015 385 QWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAK 464 (470)
T ss_pred hHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999954489999995 2 58999999999999963 568999999999999999999999999999999998
Q ss_pred HHH
Q 012151 466 HIL 468 (470)
Q Consensus 466 ~l~ 468 (470)
.++
T Consensus 465 ~~~ 467 (470)
T PLN03015 465 RCY 467 (470)
T ss_pred hcc
Confidence 863
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=3e-61 Score=475.23 Aligned_cols=419 Identities=24% Similarity=0.373 Sum_probs=319.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCC--CCeeEEecC--CCCCCCcccccCHH--
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNY--PHFDFHSFP--DGFSETEASVEDVA-- 88 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~--~gi~~~~~~--~~~~~~~~~~~~~~-- 88 (470)
++||+++|++++||++|++.||+.|+++|+.|||++++.+...+....... ..+.+.++| +++|++.+...+..
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~ 84 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPVT 84 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCChh
Confidence 679999999999999999999999999999999999987655444321011 237777787 67776533221111
Q ss_pred --HHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhh
Q 012151 89 --VFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPIL 166 (470)
Q Consensus 89 --~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~ 166 (470)
..+......+.+.++++++++ +|||||+|. ..|+..+|+++|||++.|+++++.....+.. +.
T Consensus 85 ~~~~~~~a~~~~~~~~~~~l~~~------------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~- 149 (453)
T PLN02764 85 SADLLMSAMDLTRDQVEVVVRAV------------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG- 149 (453)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhC------------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc-
Confidence 222223333445555555442 689999995 8899999999999999999998877766542 10
Q ss_pred hhccCCCCCCCCCCcccCCCCC----CCCccccCcccc----cCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHH
Q 012151 167 RERAYLPVQDHQSLETPVTEFP----PLRVKDIQVLET----MDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGL 238 (470)
Q Consensus 167 ~~~~~~p~~~~~~~~~~i~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~ 238 (470)
...+ ..+|++| .++..+++.+.. ...................++.+++||+.+||..+++.
T Consensus 150 ---~~~~--------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~ 218 (453)
T PLN02764 150 ---GELG--------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDY 218 (453)
T ss_pred ---ccCC--------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHH
Confidence 0000 1124444 244444443211 11112223333333456678899999999999999999
Q ss_pred HhhccCCCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEE
Q 012151 239 AHQKYLSIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWV 318 (470)
Q Consensus 239 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~ 318 (470)
+ +...+++++.|||+...... .. ..+ +++.+||++++++++|||||||....+.+++.+++.+|+..+.+++|+
T Consensus 219 ~-~~~~~~~v~~VGPL~~~~~~--~~--~~~-~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv 292 (453)
T PLN02764 219 I-EKHCRKKVLLTGPVFPEPDK--TR--ELE-ERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVA 292 (453)
T ss_pred H-HhhcCCcEEEeccCccCccc--cc--cch-hHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 8 87555679999999754211 01 112 459999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcccCCCchhHHHHhcCCceee-eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhH
Q 012151 319 VRPGLVSGAEWVEPLPKGFLEMLDGRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNA 397 (470)
Q Consensus 319 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na 397 (470)
+..+...... .+.+|++++++..+++.++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||
T Consensus 293 ~r~~~~~~~~-~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na 371 (453)
T PLN02764 293 VKPPRGSSTI-QEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNT 371 (453)
T ss_pred EeCCCCCcch-hhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHH
Confidence 9853211111 2359999999988888777 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhheeEEcCC----cccHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 012151 398 RYVSHFWRVGLHSEW----KLERMEIERAIRRVMVE--AEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILSF 470 (470)
Q Consensus 398 ~rv~~~~G~G~~l~~----~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (470)
+++++.+|+|+.+.. .+++++|+++|+++|++ ++|+.+|++++++++++++. |+|.++++++++.++.+
T Consensus 372 ~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~----GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 372 RLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASP----GLLTGYVDNFIESLQDL 446 (453)
T ss_pred HHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHh
Confidence 999644799999743 48999999999999987 44788999999999999776 99999999999998753
No 19
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-61 Score=476.85 Aligned_cols=429 Identities=28% Similarity=0.461 Sum_probs=323.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEE--EeCCCCCccc----ccccCCCCCeeEEecCCCCCCCc--ccc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKG--FSVTI--IHTDFNFSST----NYFSCNYPHFDFHSFPDGFSETE--ASV 84 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~--~~~~~~~~~~----~~~~~~~~gi~~~~~~~~~~~~~--~~~ 84 (470)
+-||+++|++++||++|++.||+.|+++| +.||+ ..+..+.... .......++++++.+|+..+... ...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 35999999999999999999999999998 55665 4443322211 11111224799999997764222 111
Q ss_pred cCHHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhch
Q 012151 85 EDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYP 164 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~ 164 (470)
.+....+......+...+.+.++++... .+++|||+|.+..|+..+|+++|||++.|+++++..+..+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 83 HHHESLLLEILCFSNPSVHRTLFSLSRN--------FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHhcCCC--------CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 2333344444456777777777766321 24699999999999999999999999999999998888877654
Q ss_pred hhhhccCCCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccC
Q 012151 165 ILRERAYLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYL 244 (470)
Q Consensus 165 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~ 244 (470)
......-..... ......+|+++.++..+++.....+....+..+.........++.+++||+.+||..++..+ ++.+
T Consensus 155 ~~~~~~~~~~~~-~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l-~~~~ 232 (451)
T PLN03004 155 TIDETTPGKNLK-DIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAI-TEEL 232 (451)
T ss_pred hccccccccccc-cCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHH-HhcC
Confidence 321110000000 11113478888888888886543333334445555555567788999999999999999988 7754
Q ss_pred C-CCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012151 245 S-IPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGL 323 (470)
Q Consensus 245 ~-~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~ 323 (470)
. ++++.|||+...... .......+ +++.+||++++++++|||||||+..++.+++++++.+|+.++.+|||++....
T Consensus 233 ~~~~v~~vGPl~~~~~~-~~~~~~~~-~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~ 310 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRI-EDRNDNKA-VSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPP 310 (451)
T ss_pred CCCCEEEEeeeccCccc-cccccchh-hHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCc
Confidence 3 579999999753211 00111223 45899999998899999999999999999999999999999999999998531
Q ss_pred CCCC--cccC-CCchhHHHHhcCCce-eeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHH
Q 012151 324 VSGA--EWVE-PLPKGFLEMLDGRGC-IVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARY 399 (470)
Q Consensus 324 ~~~~--~~~~-~~p~~~~~~~~~~~~-~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 399 (470)
.... .... .+|++++++..++.. +.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||++
T Consensus 311 ~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~ 390 (451)
T PLN03004 311 ELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVM 390 (451)
T ss_pred cccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHH
Confidence 1000 0012 288999999886554 55999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhheeEEcCC----cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHH
Q 012151 400 VSHFWRVGLHSEW----KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQ 458 (470)
Q Consensus 400 v~~~~G~G~~l~~----~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 458 (470)
+++.+|+|+.++. .+++++|+++|+++|+| ++|+++++++++..+.++.+||+|.+
T Consensus 391 ~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 391 IVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9754799999964 37999999999999998 89999999999999999999999875
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=6.7e-61 Score=476.01 Aligned_cols=421 Identities=23% Similarity=0.324 Sum_probs=312.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEec--C--CCCCCCcccccCHHH
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSF--P--DGFSETEASVEDVAV 89 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~--~--~~~~~~~~~~~~~~~ 89 (470)
++.||+++|++++||++|++.||+.|+++|++|||++++.+...+........++.|..+ | +++|++.+...++..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 467999999999999999999999999999999999998776555432111235788554 3 677766433223322
Q ss_pred HHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhc
Q 012151 90 FFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRER 169 (470)
Q Consensus 90 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 169 (470)
........+...+.+.++++... .+|||||+|. ..|+..+|+++|||++.|+++++.....+.+ +. ..
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~~--------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~--~~ 150 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVRA--------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR--AE 150 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc--------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH--hh
Confidence 11111222223444444544432 3789999995 8899999999999999999999887776554 11 00
Q ss_pred cCCCCCCCCCCcccCCCCCC----CCcccc--CcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhcc
Q 012151 170 AYLPVQDHQSLETPVTEFPP----LRVKDI--QVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKY 243 (470)
Q Consensus 170 ~~~p~~~~~~~~~~i~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~ 243 (470)
. ...+++++. ++..+. +.+... ....+.+..+....++.+++||+.+||..+++.+ +..
T Consensus 151 -~---------~~~~pg~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~-~~~ 215 (446)
T PLN00414 151 -L---------GFPPPDYPLSKVALRGHDANVCSLFAN----SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFI-ERQ 215 (446)
T ss_pred -c---------CCCCCCCCCCcCcCchhhcccchhhcc----cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHH-HHh
Confidence 0 001233332 111111 111110 1123333344556788999999999999999988 876
Q ss_pred CCCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012151 244 LSIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGL 323 (470)
Q Consensus 244 ~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~ 323 (470)
++++++.|||+...... ......+ +++.+||++++++++|||||||....+.+++.+++.+|+.++.+|+|++....
T Consensus 216 ~~~~v~~VGPl~~~~~~--~~~~~~~-~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~ 292 (446)
T PLN00414 216 CQRKVLLTGPMLPEPQN--KSGKPLE-DRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPK 292 (446)
T ss_pred cCCCeEEEcccCCCccc--ccCcccH-HHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 65679999999754211 0111122 45899999999999999999999999999999999999999999999997632
Q ss_pred CCCCcccCCCchhHHHHhcCCceee-eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHh
Q 012151 324 VSGAEWVEPLPKGFLEMLDGRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSH 402 (470)
Q Consensus 324 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~ 402 (470)
..+. ..+.+|++++++..++++++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++
T Consensus 293 ~~~~-~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~ 371 (446)
T PLN00414 293 GSST-VQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTE 371 (446)
T ss_pred Cccc-chhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHH
Confidence 1111 12358999999999999887 999999999999999999999999999999999999999999999999999964
Q ss_pred hhheeEEcCC----cccHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 403 FWRVGLHSEW----KLERMEIERAIRRVMVE--AEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 403 ~~G~G~~l~~----~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
.+|+|+.+.. .+++++|+++++++|.+ +.|+.+|++++++++.+.+. ||+...++++++.+++
T Consensus 372 ~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~----gg~ss~l~~~v~~~~~ 440 (446)
T PLN00414 372 ELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP----GLLSGYADKFVEALEN 440 (446)
T ss_pred HhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHH
Confidence 3799999964 38999999999999976 34678999999999998544 5534559999999875
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.4e-60 Score=477.58 Aligned_cols=445 Identities=26% Similarity=0.435 Sum_probs=326.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC---CeEEEEeCCCCCc-----ccccccCCCCCeeEEecCCCCCC-Cccc-c
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKG---FSVTIIHTDFNFS-----STNYFSCNYPHFDFHSFPDGFSE-TEAS-V 84 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rG---h~V~~~~~~~~~~-----~~~~~~~~~~gi~~~~~~~~~~~-~~~~-~ 84 (470)
+.||+++|++++||++|++.||+.|+.+| +.||++++..... .+.......++|+|+.+|+...+ +.+. .
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~~ 82 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELFV 82 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccccc
Confidence 56999999999999999999999999998 3567777543211 11111112246999999965422 1110 1
Q ss_pred cCHHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhch
Q 012151 85 EDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYP 164 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~ 164 (470)
......+..+...+...+++.++++...... + .+.+++|||+|.+..|+..+|+++|||++.|+++++..+..+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~-~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 83 KASEAYILEFVKKMVPLVRDALSTLVSSRDE-S-DSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccc-c-CCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 1122233334445666777777776432100 0 0014599999999999999999999999999999998877766544
Q ss_pred hhhhccCCCCCCCC-CCcccCCCC-CCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhc
Q 012151 165 ILRERAYLPVQDHQ-SLETPVTEF-PPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQK 242 (470)
Q Consensus 165 ~~~~~~~~p~~~~~-~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~ 242 (470)
.............. .....+|++ +.++..+++...... ..+..+.+..+....++.+++||+.+||..++..+ +.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l-~~ 237 (475)
T PLN02167 161 ERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYF-SR 237 (475)
T ss_pred HhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHH-Hh
Confidence 32111000000000 111237787 357777776432211 11333334445567788999999999999999887 66
Q ss_pred c---CCCCeeeeccCCCCCCCCCCCCCc-cchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEE
Q 012151 243 Y---LSIPIFPIGPLHKCSPASSGSLSS-QDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWV 318 (470)
Q Consensus 243 ~---~~~~v~~vGpl~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~ 318 (470)
. + +++++|||+...... .....+ .+.+++.+||+.++.+++|||||||+...+.+++.+++.+|+.++.+|||+
T Consensus 238 ~~~~~-p~v~~vGpl~~~~~~-~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~ 315 (475)
T PLN02167 238 LPENY-PPVYPVGPILSLKDR-TSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWS 315 (475)
T ss_pred hcccC-CeeEEeccccccccc-cCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 3 3 579999999864221 001111 111469999999888999999999998889999999999999999999999
Q ss_pred EcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHH
Q 012151 319 VRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNAR 398 (470)
Q Consensus 319 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 398 (470)
++.+........+.+|++++++..+++++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+
T Consensus 316 ~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~ 395 (475)
T PLN02167 316 IRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAF 395 (475)
T ss_pred EecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHH
Confidence 97532110000124899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H-HHhhhheeEEcCC--------cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 399 Y-VSHFWRVGLHSEW--------KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 399 r-v~~~~G~G~~l~~--------~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
+ +++ +|+|+.+.. .+++++|+++|+++|.++ +.||++|+++++++++++.+||+|.++++++++.++.
T Consensus 396 ~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 396 TMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 6 667 799998852 369999999999999862 4899999999999999999999999999999999863
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=8.7e-52 Score=418.33 Aligned_cols=412 Identities=18% Similarity=0.162 Sum_probs=288.8
Q ss_pred CCEEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCc---ccc------
Q 012151 15 GRRVILF-PLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETE---ASV------ 84 (470)
Q Consensus 15 ~~~il~~-~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~------ 84 (470)
..||+++ |.++.+|+.-+.+|+++|++|||+||++++......-.. ...+++.+.++...+... ...
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASH---LCGNITEIDASLSVEYFKKLVKSSAVFRKR 96 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccC---CCCCEEEEEcCCChHHHHHHHhhhhHHHhh
Confidence 3467755 888999999999999999999999999988532111110 125677666541111100 000
Q ss_pred c---CH----HHHHHHHHhhcchHHHH-HHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhc-CCCeEEEecccHH
Q 012151 85 E---DV----AVFFTAINGKCIMPFRD-CLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADF-KLPTIVLQTCGVS 155 (470)
Q Consensus 85 ~---~~----~~~~~~~~~~~~~~l~~-~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~-giP~v~~~~~~~~ 155 (470)
. +. ......+...|...+.+ .+.++++. ++.++|+||+|.+..|+..+|+++ ++|.|.+++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~------~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 97 GVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN------KNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc------CCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 0 00 01112223456555543 33344431 115899999998889999999999 9999888886554
Q ss_pred HHHHHHhch-hhhhccCCCCCCC-----CCCcccCCCCCCCCcccc-CcccccCchhHHHHH-H----HHHhhhccccEE
Q 012151 156 GFLAFTAYP-ILRERAYLPVQDH-----QSLETPVTEFPPLRVKDI-QVLETMDQENVYRFV-S----AIDTQIMASSGV 223 (470)
Q Consensus 156 ~~~~~~~~~-~~~~~~~~p~~~~-----~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~ 223 (470)
..... ..+ .+.+++|+|.... +.+..++.++.......+ ........+.+.+.. . ...+.....+.+
T Consensus 171 ~~~~~-~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~ 249 (507)
T PHA03392 171 AENFE-TMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLL 249 (507)
T ss_pred hhHHH-hhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEE
Confidence 33222 234 6777888886432 222223333210000000 000002223333222 1 245566778899
Q ss_pred EEcChHHhhHHHHHHHhhccCCCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccc---cCHHH
Q 012151 224 IWNSYRDLEQAGLGLAHQKYLSIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIA---INKDG 300 (470)
Q Consensus 224 l~~s~~~le~p~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~---~~~~~ 300 (470)
|+|+.+.+|+| ++ +++++++|||++.+... ..+++++ +.+|++.. ++++|||||||+.. .+.++
T Consensus 250 lvns~~~~d~~------rp-~~p~v~~vGgi~~~~~~--~~~l~~~---l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~ 316 (507)
T PHA03392 250 FVNVHPVFDNN------RP-VPPSVQYLGGLHLHKKP--PQPLDDY---LEEFLNNS-TNGVVYVSFGSSIDTNDMDNEF 316 (507)
T ss_pred EEecCccccCC------CC-CCCCeeeecccccCCCC--CCCCCHH---HHHHHhcC-CCcEEEEECCCCCcCCCCCHHH
Confidence 99999999998 76 45889999999875311 2345555 99999854 45899999999864 57889
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhc
Q 012151 301 FLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCE 380 (470)
Q Consensus 301 ~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~ 380 (470)
++.+++|+++++.++||+++... .+ ...++|+++.+|+||.+||+|+.+++||||||+||++||+++
T Consensus 317 ~~~~l~a~~~l~~~viw~~~~~~---------~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~ 383 (507)
T PHA03392 317 LQMLLRTFKKLPYNVLWKYDGEV---------EA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDA 383 (507)
T ss_pred HHHHHHHHHhCCCeEEEEECCCc---------Cc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHc
Confidence 99999999999999999986432 11 123566699999999999999999999999999999999999
Q ss_pred CCceecCCCccchhhhHHHHHhhhheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 012151 381 GVPMICQPYLPDQMVNARYVSHFWRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQS 459 (470)
Q Consensus 381 GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 459 (470)
|||||++|+..||+.||+|+++ +|+|+.+++ ++++++|.++|+++++| ++|+++|+++++.+++. +..+..++
T Consensus 384 GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~~--p~~~~~~a 457 (507)
T PHA03392 384 LVPMVGLPMMGDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRHQ--PMTPLHKA 457 (507)
T ss_pred CCCEEECCCCccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 9999999999999999999999 599999998 89999999999999999 99999999999999974 22356666
Q ss_pred HHHHHHHHH
Q 012151 460 LERLIDHIL 468 (470)
Q Consensus 460 ~~~~~~~l~ 468 (470)
+.-++.-++
T Consensus 458 v~~iE~v~r 466 (507)
T PHA03392 458 IWYTEHVIR 466 (507)
T ss_pred HHHHHHHHh
Confidence 665554443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.5e-53 Score=438.31 Aligned_cols=388 Identities=26% Similarity=0.341 Sum_probs=235.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCccc--cc---------
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEAS--VE--------- 85 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~--~~--------- 85 (470)
||+++|+ ++||+.++..|+++|++|||+||++++......-.. ...++++..++...+..... ..
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPS---KPSNIRFETYPDPYPEEEFEEIFPEFISKFFSE 77 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT---------S-CCEEEE-----TT------TTHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccc---cccceeeEEEcCCcchHHHhhhhHHHHHHHhhh
Confidence 5888885 779999999999999999999999998532221111 22566676666444332200 00
Q ss_pred -----CHHHHHH-------HHHhhcchHHH--HHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEec
Q 012151 86 -----DVAVFFT-------AINGKCIMPFR--DCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQT 151 (470)
Q Consensus 86 -----~~~~~~~-------~~~~~~~~~l~--~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~ 151 (470)
+....+. .....|...+. ++++.+.. .++|++|+|.+..|+..+|+.+++|.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---------~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 78 SSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---------EKFDLVISDAFDPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp HCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---------HHHCT-EEEEEESSHHHHHHHHHHTHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---------hccccceEeeccchhHHHHHHhcCCeEEEec
Confidence 1111111 11123432222 12233332 2799999999889999999999999988654
Q ss_pred ccHHHHHHHHhchhhhhccCCCCCCC-----CCCcccCCCCCC-CCccccCcccccCchhHH----HHHHHHHhhhcccc
Q 012151 152 CGVSGFLAFTAYPILRERAYLPVQDH-----QSLETPVTEFPP-LRVKDIQVLETMDQENVY----RFVSAIDTQIMASS 221 (470)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 221 (470)
............+.+.+++|.|.... ..+..++.++.. +....+.......++.+. .......+.+...+
T Consensus 149 ~~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
T PF00201_consen 149 STPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNAS 228 (500)
T ss_dssp CCSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHH
T ss_pred ccccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHH
Confidence 33221111111134556777775431 122222222210 000000000000011110 00011223334567
Q ss_pred EEEEcChHHhhHHHHHHHhhccCCCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccc-cCHHH
Q 012151 222 GVIWNSYRDLEQAGLGLAHQKYLSIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIA-INKDG 300 (470)
Q Consensus 222 ~~l~~s~~~le~p~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~-~~~~~ 300 (470)
.+++|+.+.+++| ++.. +++++||+++... ..+++.+ +.+|++...++++|||||||... ++.+.
T Consensus 229 l~l~ns~~~ld~p------rp~~-p~v~~vGgl~~~~----~~~l~~~---~~~~~~~~~~~~vv~vsfGs~~~~~~~~~ 294 (500)
T PF00201_consen 229 LVLINSHPSLDFP------RPLL-PNVVEVGGLHIKP----AKPLPEE---LWNFLDSSGKKGVVYVSFGSIVSSMPEEK 294 (500)
T ss_dssp HCCSSTEEE----------HHHH-CTSTTGCGC-S--------TCHHH---HHHHTSTTTTTEEEEEE-TSSSTT-HHHH
T ss_pred HHhhhccccCcCC------cchh-hcccccCcccccc----ccccccc---cchhhhccCCCCEEEEecCcccchhHHHH
Confidence 7889999999998 7754 7899999998873 3456666 89999965678999999999976 45555
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhc
Q 012151 301 FLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCE 380 (470)
Q Consensus 301 ~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~ 380 (470)
.+.+++|+++++.++||++.+. .+.++ ++|+++++|+||.+||+|+++++||||||+||++||+++
T Consensus 295 ~~~~~~~~~~~~~~~iW~~~~~----------~~~~l----~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~ 360 (500)
T PF00201_consen 295 LKEIAEAFENLPQRFIWKYEGE----------PPENL----PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYH 360 (500)
T ss_dssp HHHHHHHHHCSTTEEEEEETCS----------HGCHH----HTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHC
T ss_pred HHHHHHHHhhCCCccccccccc----------ccccc----cceEEEeccccchhhhhcccceeeeeccccchhhhhhhc
Confidence 8889999999999999999542 22333 577799999999999999999999999999999999999
Q ss_pred CCceecCCCccchhhhHHHHHhhhheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 012151 381 GVPMICQPYLPDQMVNARYVSHFWRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFC 449 (470)
Q Consensus 381 GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~ 449 (470)
|||||++|+++||+.||+|++++ |+|+.++. ++|+++|.++|+++|+| ++|++||+++++.+++.
T Consensus 361 gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 361 GVPMLGIPLFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLEN---PSYKENAKRLSSLFRDR 426 (500)
T ss_dssp T--EEE-GCSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHS---HHHHHHHHHHHHTTT--
T ss_pred cCCccCCCCcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhcC
Confidence 99999999999999999999995 99999998 99999999999999999 99999999999999875
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.1e-45 Score=368.34 Aligned_cols=382 Identities=16% Similarity=0.237 Sum_probs=267.8
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCccc-c---cCHHHHHHHHHh
Q 012151 21 FPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEAS-V---EDVAVFFTAING 96 (470)
Q Consensus 21 ~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~ 96 (470)
+.+|++||++|+++||++|+++||+|+|++++.+.+.++. .|+.|.+++...+..... . .+....+..+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-----AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLD 75 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcCccccccccccCcchHHHHHHHHH
Confidence 3578999999999999999999999999999999988887 899999998654331110 0 233333444443
Q ss_pred hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCCCCCC
Q 012151 97 KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPVQD 176 (470)
Q Consensus 97 ~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 176 (470)
.+...+.++++.+ .. .+||+||+|.+++++..+|+.+|||+|.+++.+.... ..+... .|...
T Consensus 76 ~~~~~~~~l~~~~-~~--------~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~----~~~~~ 138 (392)
T TIGR01426 76 EAEDVLPQLEEAY-KG--------DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMV----SPAGE 138 (392)
T ss_pred HHHHHHHHHHHHh-cC--------CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccccc----cccch
Confidence 3333433333222 21 5899999999888999999999999999865432110 001000 01000
Q ss_pred CCCCcccCCCCCCCCccccCcccccCchhHHHHHH----HHHhh-hccccEEEEcChHHhhHHHHHHHhhccCCCCeeee
Q 012151 177 HQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVS----AIDTQ-IMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIFPI 251 (470)
Q Consensus 177 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~~v 251 (470)
...... ....+.+..+ ....+.+++.+. ..... .......+..+.+.|+++ ++.++++++++
T Consensus 139 --~~~~~~----~~~~~~~~~~-~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~ 205 (392)
T TIGR01426 139 --GSAEEG----AIAERGLAEY-VARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA------GETFDDSFTFV 205 (392)
T ss_pred --hhhhhh----ccccchhHHH-HHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC------ccccCCCeEEE
Confidence 000000 0000000000 000111111110 00001 122334677777888776 66787889999
Q ss_pred ccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccC
Q 012151 252 GPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVE 331 (470)
Q Consensus 252 Gpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~ 331 (470)
||+..... + ...|.....++++||+|+||+.....+.+..+++++++.+.+++|.++.+..
T Consensus 206 Gp~~~~~~---------~---~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~------- 266 (392)
T TIGR01426 206 GPCIGDRK---------E---DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD------- 266 (392)
T ss_pred CCCCCCcc---------c---cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC-------
Confidence 99876421 1 2236665667889999999987666678888999999999999988754321
Q ss_pred CCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcC
Q 012151 332 PLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSE 411 (470)
Q Consensus 332 ~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 411 (470)
...+ ...++|+.+.+|+|+.++|+++++ +|||||.||++||+++|+|+|++|...||+.||+++++ +|+|..+.
T Consensus 267 --~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~ 340 (392)
T TIGR01426 267 --PADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLP 340 (392)
T ss_pred --hhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEec
Confidence 0111 123567789999999999999887 99999999999999999999999999999999999999 69999998
Q ss_pred C-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 412 W-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 412 ~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
. .+++++|.++|+++++| ++|+++++++++.++.. ++..++++.|++.+.+
T Consensus 341 ~~~~~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~~~----~~~~~aa~~i~~~~~~ 392 (392)
T TIGR01426 341 PEEVTAEKLREAVLAVLSD---PRYAERLRKMRAEIREA----GGARRAADEIEGFLAE 392 (392)
T ss_pred cccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHc----CCHHHHHHHHHHhhcC
Confidence 7 89999999999999999 99999999999999987 8888888888776653
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.4e-44 Score=358.34 Aligned_cols=376 Identities=17% Similarity=0.148 Sum_probs=253.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCccc-----------c
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEAS-----------V 84 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~-----------~ 84 (470)
|||+|+++|+.||++|+++||++|++|||+|+|++++.+...+.. .|++|.++++..+..... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-----AGLEFVPVGGDPDELLASPERNAGLLLLGP 75 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-----cCCceeeCCCCHHHHHhhhhhcccccccch
Confidence 689999999999999999999999999999999999988887776 899999998543321110 0
Q ss_pred cCHHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhch
Q 012151 85 EDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYP 164 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~ 164 (470)
.........+...+...+.++++.+.+ ++||+||+|.+.+++..+|+++|||+|.+++++....... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~---~ 143 (401)
T cd03784 76 GLLLGALRLLRREAEAMLDDLVAAARD---------WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF---P 143 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---------cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC---C
Confidence 111222233333344444444443322 5999999999888999999999999999987654321100 0
Q ss_pred hhhhccCCCCCCCCCCcccCCCCCCCCccccCcccccCc-hhHHHHHHHHHhhh---------ccccEEEEcChHHhhHH
Q 012151 165 ILRERAYLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQ-ENVYRFVSAIDTQI---------MASSGVIWNSYRDLEQA 234 (470)
Q Consensus 165 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~l~~s~~~le~p 234 (470)
|... ......+........ .............. ......+....+.+.++
T Consensus 144 --------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 203 (401)
T cd03784 144 --------PPLG------------RANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP 203 (401)
T ss_pred --------Cccc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC
Confidence 0000 000000000000000 00000011111100 01122333333444433
Q ss_pred HHHHHhhccCCCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccc-cCHHHHHHHHHHHHhCCC
Q 012151 235 GLGLAHQKYLSIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIA-INKDGFLEIAWGVANSRM 313 (470)
Q Consensus 235 ~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~-~~~~~~~~i~~al~~~~~ 313 (470)
++.++++..++|......+. ....+ .++..|++. ++++||||+||+.. ...+.+..++++++..+.
T Consensus 204 ------~~~~~~~~~~~g~~~~~~~~----~~~~~-~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~ 270 (401)
T cd03784 204 ------PPDWPRFDLVTGYGFRDVPY----NGPPP-PELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQ 270 (401)
T ss_pred ------CCCccccCcEeCCCCCCCCC----CCCCC-HHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCC
Confidence 56666677787633322111 11223 447788863 57899999999976 345677889999999999
Q ss_pred CEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccch
Q 012151 314 PFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQ 393 (470)
Q Consensus 314 ~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ 393 (470)
++||+++...... ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||
T Consensus 271 ~~i~~~g~~~~~~------------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ 336 (401)
T cd03784 271 RAILSLGWGGLGA------------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQ 336 (401)
T ss_pred eEEEEccCccccc------------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCc
Confidence 9999986543110 123466799999999999999888 99999999999999999999999999999
Q ss_pred hhhHHHHHhhhheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012151 394 MVNARYVSHFWRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLI 464 (470)
Q Consensus 394 ~~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
+.||+++++ +|+|+.++. .+++++|.++|++++++ + ++++++++++.+++. ++..++++.+.
T Consensus 337 ~~~a~~~~~-~G~g~~l~~~~~~~~~l~~al~~~l~~---~-~~~~~~~~~~~~~~~----~g~~~~~~~ie 399 (401)
T cd03784 337 PFWAARVAE-LGAGPALDPRELTAERLAAALRRLLDP---P-SRRRAAALLRRIREE----DGVPSAADVIE 399 (401)
T ss_pred HHHHHHHHH-CCCCCCCCcccCCHHHHHHHHHHHhCH---H-HHHHHHHHHHHHHhc----cCHHHHHHHHh
Confidence 999999999 699999987 78999999999999997 4 556677777777665 66666665554
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-43 Score=344.49 Aligned_cols=387 Identities=18% Similarity=0.201 Sum_probs=250.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCc--ccccCHHHHHH
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETE--ASVEDVAVFFT 92 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~--~~~~~~~~~~~ 92 (470)
+|||+++..|+.||++|+++||++|.++||+|+|++++.+.+.+++ .|+.|..++....+.. ....+....+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-----ag~~f~~~~~~~~~~~~~~~~~~~~~~~~ 75 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-----AGLAFVAYPIRDSELATEDGKFAGVKSFR 75 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-----hCcceeeccccCChhhhhhhhhhccchhH
Confidence 3689999999999999999999999999999999999999999987 7888888874322111 11111111111
Q ss_pred HHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCC
Q 012151 93 AINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYL 172 (470)
Q Consensus 93 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (470)
...........+.++-+.+ ..||+++.|.....+ .+++..++|++.......+....... +. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~e---------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~ 138 (406)
T COG1819 76 RLLQQFKKLIRELLELLRE---------LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL------PL-P 138 (406)
T ss_pred HHhhhhhhhhHHHHHHHHh---------cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc------Cc-c
Confidence 1122222222333333433 379999999655444 88999999999865553332222110 00 0
Q ss_pred CCCCCCCCcccCCCCCCCCccccCcccccCc---------hhHHHHH-HHHHhhhccccEEEEcChHHhhHHHHHHHhhc
Q 012151 173 PVQDHQSLETPVTEFPPLRVKDIQVLETMDQ---------ENVYRFV-SAIDTQIMASSGVIWNSYRDLEQAGLGLAHQK 242 (470)
Q Consensus 173 p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~ 242 (470)
+....... .++.. .+...........+. ...+... .+............+...+...+| ..
T Consensus 139 ~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 209 (406)
T COG1819 139 PVGIAGKL--PIPLY-PLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPP------GD 209 (406)
T ss_pred cccccccc--ccccc-ccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCC------CC
Confidence 00000000 00000 000000000000000 0000000 001111111111111111111110 01
Q ss_pred cCCCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 012151 243 YLSIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPG 322 (470)
Q Consensus 243 ~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~ 322 (470)
.+|....++||+...... +...|. ..++++||+|+||.... .++++.+++|++.++.++|+.+..
T Consensus 210 ~~p~~~~~~~~~~~~~~~-----------~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~- 274 (406)
T COG1819 210 RLPFIGPYIGPLLGEAAN-----------ELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG- 274 (406)
T ss_pred CCCCCcCccccccccccc-----------cCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-
Confidence 223446777777765221 133343 35678999999999976 889999999999999999998855
Q ss_pred CCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHh
Q 012151 323 LVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSH 402 (470)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~ 402 (470)
.... ...+|.|+ ++.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||++||.|+++
T Consensus 275 ~~~~---~~~~p~n~--------~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~ 341 (406)
T COG1819 275 ARDT---LVNVPDNV--------IVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE 341 (406)
T ss_pred cccc---cccCCCce--------EEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH
Confidence 2111 23355554 99999999999999998 99999999999999999999999999999999999999
Q ss_pred hhheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 403 FWRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 403 ~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
+|+|..+.. .++++.|+++|+++|+| +.|+++++++++.++.. ++..++.+.|.+..+
T Consensus 342 -~G~G~~l~~~~l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~~~----~g~~~~a~~le~~~~ 400 (406)
T COG1819 342 -LGAGIALPFEELTEERLRAAVNEVLAD---DSYRRAAERLAEEFKEE----DGPAKAADLLEEFAR 400 (406)
T ss_pred -cCCceecCcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhhc----ccHHHHHHHHHHHHh
Confidence 699999998 89999999999999999 99999999999999997 776556666655444
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.8e-40 Score=338.25 Aligned_cols=395 Identities=31% Similarity=0.454 Sum_probs=259.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCee--------EEecCCCCCCCcccc-cC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFD--------FHSFPDGFSETEASV-ED 86 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~--------~~~~~~~~~~~~~~~-~~ 86 (470)
.+++++++|++||++|+..||+.|+++||+||++++.......... .....+. +...++.++...... .+
T Consensus 6 ~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 6 AHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred ceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 4788888889999999999999999999999999997654443320 0111111 111111222221110 11
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcC-CCeEEEecccHHHHHHHHhchh
Q 012151 87 VAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFK-LPTIVLQTCGVSGFLAFTAYPI 165 (470)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~g-iP~v~~~~~~~~~~~~~~~~~~ 165 (470)
.......+...|...+.+.+..+..... .++|++|+|.+..+...+|.... ++...+.+........ +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----g~ 154 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKS------EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLAL----GL 154 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhc------CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhc----CC
Confidence 1222445556677777775555544332 24999999987666666676664 8877777665544333 22
Q ss_pred hhhccCCCCCCC------CCCcccCCCCCCCCccccCccccc-----CchhHHHHH--------HHHHhhhccccEEEEc
Q 012151 166 LRERAYLPVQDH------QSLETPVTEFPPLRVKDIQVLETM-----DQENVYRFV--------SAIDTQIMASSGVIWN 226 (470)
Q Consensus 166 ~~~~~~~p~~~~------~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------~~~~~~~~~~~~~l~~ 226 (470)
+.+..+.|.... ..+..+..+ +....++..... ........+ ....+........++|
T Consensus 155 ~~~~~~~p~~~~~~~~~~~~~~~~~~n---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln 231 (496)
T KOG1192|consen 155 PSPLSYVPSPFSLSSGDDMSFPERVPN---LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLN 231 (496)
T ss_pred cCcccccCcccCccccccCcHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEc
Confidence 223334444321 001111111 011111100000 000011110 1122444556678888
Q ss_pred ChHHhhH-HHHHHHhhccCCCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCC--eEEEEEcCccc---ccCHHH
Q 012151 227 SYRDLEQ-AGLGLAHQKYLSIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPK--SVVYISFGSVI---AINKDG 300 (470)
Q Consensus 227 s~~~le~-p~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~I~vs~Gs~~---~~~~~~ 300 (470)
+.+.+++ + ++ ..+++++|||+...... ..... ..+|++..+.. ++|||||||+. .++.++
T Consensus 232 ~~~~~~~~~------~~-~~~~v~~IG~l~~~~~~----~~~~~---~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~ 297 (496)
T KOG1192|consen 232 SNPLLDFEP------RP-LLPKVIPIGPLHVKDSK----QKSPL---PLEWLDILDESRHSVVYISFGSMVNSADLPEEQ 297 (496)
T ss_pred cCcccCCCC------CC-CCCCceEECcEEecCcc----ccccc---cHHHHHHHhhccCCeEEEECCcccccccCCHHH
Confidence 8877776 3 33 34789999999987322 11112 45677655554 89999999998 699999
Q ss_pred HHHHHHHHHhC-CCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhh-hccCCcceeecccCchhhHHhh
Q 012151 301 FLEIAWGVANS-RMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEV-LAHPAVGGFWTHSGWNSTLESM 378 (470)
Q Consensus 301 ~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~l-L~~~~~~~~I~HGG~gs~~eal 378 (470)
.+.++.|++.+ +..|||++...... .+++++.++.++|+...+|+||.++ |+|+++++||||||+|||+|++
T Consensus 298 ~~~l~~~l~~~~~~~FiW~~~~~~~~------~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~ 371 (496)
T KOG1192|consen 298 KKELAKALESLQGVTFLWKYRPDDSI------YFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESI 371 (496)
T ss_pred HHHHHHHHHhCCCceEEEEecCCcch------hhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHH
Confidence 99999999999 88899999664211 0233332112346778899999998 5999999999999999999999
Q ss_pred hcCCceecCCCccchhhhHHHHHhhhheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 012151 379 CEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDF 448 (470)
Q Consensus 379 ~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 448 (470)
++|||||++|+++||+.||++++++ |.|..+.+ +++.+.+..++..++++ ++|+++++++++.+++
T Consensus 372 ~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~---~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 372 YSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN---EEYKEAAKRLSEILRD 438 (496)
T ss_pred hcCCceecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC---hHHHHHHHHHHHHHHc
Confidence 9999999999999999999999997 77777777 67776799999999999 9999999999998874
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=1.1e-24 Score=212.41 Aligned_cols=306 Identities=12% Similarity=0.094 Sum_probs=193.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCc--ccccccCCCCCeeEEecCC-CCCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFS--STNYFSCNYPHFDFHSFPD-GFSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~--~~~~~~~~~~gi~~~~~~~-~~~~~~~~~~~~~~~~~~ 93 (470)
+|++.+.++.||++|.++||++|.++||+|+|++.....+ .+.+ .|+.+..++. ++... .....+..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~-----~g~~~~~~~~~~l~~~-----~~~~~~~~ 72 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK-----ENIPYYSISSGKLRRY-----FDLKNIKD 72 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc-----cCCcEEEEeccCcCCC-----chHHHHHH
Confidence 6899999999999999999999999999999999764432 2222 5788887762 22111 11122323
Q ss_pred HHhhcchHHH--HHHHHHHhcccCCCCCCCCCcEEEeCCCcc--chHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhc
Q 012151 94 INGKCIMPFR--DCLAEILMKSKADQNKDSSPCCLITDAFWF--FTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRER 169 (470)
Q Consensus 94 ~~~~~~~~l~--~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~--~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 169 (470)
..+.....+. .++++ .+||+|+...... .+..+|..+++|+++.....
T Consensus 73 ~~~~~~~~~~~~~i~~~------------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~---------------- 124 (352)
T PRK12446 73 PFLVMKGVMDAYVRIRK------------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM---------------- 124 (352)
T ss_pred HHHHHHHHHHHHHHHHh------------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC----------------
Confidence 2222222221 12333 4999999986453 36799999999998843221
Q ss_pred cCCCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCC-CCe
Q 012151 170 AYLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLS-IPI 248 (470)
Q Consensus 170 ~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~-~~v 248 (470)
++++ . .+. ..+.++.++. ++++ . ...++ .++
T Consensus 125 --------------~~g~---~---------------nr~------~~~~a~~v~~-~f~~---~------~~~~~~~k~ 156 (352)
T PRK12446 125 --------------TPGL---A---------------NKI------ALRFASKIFV-TFEE---A------AKHLPKEKV 156 (352)
T ss_pred --------------CccH---H---------------HHH------HHHhhCEEEE-Eccc---h------hhhCCCCCe
Confidence 1111 0 000 0111222332 2322 1 22232 468
Q ss_pred eeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Q 012151 249 FPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINK-DGFLEIAWGVANSRMPFLWVVRPGLVSGA 327 (470)
Q Consensus 249 ~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~-~~~~~i~~al~~~~~~~i~~~~~~~~~~~ 327 (470)
.++|+...+.-. ..+.+...+-+.-.+++++|+|..||...... +.+..++..+.. +.+++|+++.+.
T Consensus 157 ~~tG~Pvr~~~~------~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---- 225 (352)
T PRK12446 157 IYTGSPVREEVL------KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---- 225 (352)
T ss_pred EEECCcCCcccc------cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch----
Confidence 899987755211 11101122223333567899999999986333 223333333322 477888886542
Q ss_pred cccCCCchhHHHHhcCCceeeecc-C-hHhhhccCCcceeecccCchhhHHhhhcCCceecCCCc-----cchhhhHHHH
Q 012151 328 EWVEPLPKGFLEMLDGRGCIVKWA-P-QQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYL-----PDQMVNARYV 400 (470)
Q Consensus 328 ~~~~~~p~~~~~~~~~~~~~~~~~-p-~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~-----~DQ~~na~rv 400 (470)
+.+.. ... .+..+.+|+ + ..++|.++++ +|||||.+|++|++++|+|+|++|+. .||..||+++
T Consensus 226 -----~~~~~-~~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l 296 (352)
T PRK12446 226 -----LDDSL-QNK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF 296 (352)
T ss_pred -----HHHHH-hhc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH
Confidence 11111 111 234566787 4 4468989998 99999999999999999999999984 4899999999
Q ss_pred HhhhheeEEcCC-cccHHHHHHHHHHHhcc
Q 012151 401 SHFWRVGLHSEW-KLERMEIERAIRRVMVE 429 (470)
Q Consensus 401 ~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~ 429 (470)
++ .|+|..+.. +++++.|.+++.++++|
T Consensus 297 ~~-~g~~~~l~~~~~~~~~l~~~l~~ll~~ 325 (352)
T PRK12446 297 ER-QGYASVLYEEDVTVNSLIKHVEELSHN 325 (352)
T ss_pred HH-CCCEEEcchhcCCHHHHHHHHHHHHcC
Confidence 99 599999987 89999999999999987
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=2.1e-24 Score=209.31 Aligned_cols=305 Identities=16% Similarity=0.186 Sum_probs=190.6
Q ss_pred CEEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHH
Q 012151 16 RRVILFPLP-FQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAI 94 (470)
Q Consensus 16 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
|||++...+ |.||+..+++||++| |||+|++++.........+ .+....+++..........+........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP------RFPVREIPGLGPIQENGRLDRWKTVRNN 72 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc------ccCEEEccCceEeccCCccchHHHHHHH
Confidence 578888777 669999999999999 6999999999755545442 2456556532111111122222222222
Q ss_pred Hh---hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccC
Q 012151 95 NG---KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAY 171 (470)
Q Consensus 95 ~~---~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 171 (470)
.. .....++++++.+.+ .+||+||+| +.+.+..+|+..|||++.+........ + ...
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~---------~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~------~----~~~ 132 (318)
T PF13528_consen 73 IRWLARLARRIRREIRWLRE---------FRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH------P----NFW 132 (318)
T ss_pred HHhhHHHHHHHHHHHHHHHh---------cCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc------c----cCC
Confidence 21 122333344443433 589999999 455677889999999999876532210 0 000
Q ss_pred CCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHh--hhccccEEEEcChHHhhHHHHHHHhhccCCCCee
Q 012151 172 LPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDT--QIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIF 249 (470)
Q Consensus 172 ~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~ 249 (470)
.+. ...+.....+... ........+.-++. ... .. ..++.
T Consensus 133 ~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-------~~--~~~~~ 174 (318)
T PF13528_consen 133 LPW----------------------------DQDFGRLIERYIDRYHFPPADRRLALSFY-PPL-------PP--FFRVP 174 (318)
T ss_pred cch----------------------------hhhHHHHHHHhhhhccCCcccceecCCcc-ccc-------cc--ccccc
Confidence 000 0001111111111 12333333433333 111 11 13466
Q ss_pred eeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCc
Q 012151 250 PIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSR-MPFLWVVRPGLVSGAE 328 (470)
Q Consensus 250 ~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~-~~~i~~~~~~~~~~~~ 328 (470)
++||+..+... . .. ..+++.|+|+||..... .++++++..+ ..+++. +...
T Consensus 175 ~~~p~~~~~~~------~--------~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~----- 226 (318)
T PF13528_consen 175 FVGPIIRPEIR------E--------LP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA----- 226 (318)
T ss_pred ccCchhccccc------c--------cC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc-----
Confidence 78887754211 0 00 12345799999988642 6678888877 455544 3331
Q ss_pred ccCCCchhHHHHhcCCceeeecc--ChHhhhccCCcceeecccCchhhHHhhhcCCceecCCC--ccchhhhHHHHHhhh
Q 012151 329 WVEPLPKGFLEMLDGRGCIVKWA--PQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPY--LPDQMVNARYVSHFW 404 (470)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~~~~~~--p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~~~~ 404 (470)
.+.. .+|+.+.++. ...++|+.+++ +|+|||+||++|++++|+|+|++|. ..||..||+++++ +
T Consensus 227 -~~~~--------~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~ 294 (318)
T PF13528_consen 227 -ADPR--------PGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-L 294 (318)
T ss_pred -cccc--------CCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-C
Confidence 0111 4566888875 56679988887 9999999999999999999999999 7899999999999 6
Q ss_pred heeEEcCC-cccHHHHHHHHHHH
Q 012151 405 RVGLHSEW-KLERMEIERAIRRV 426 (470)
Q Consensus 405 G~G~~l~~-~~~~~~l~~ai~~v 426 (470)
|+|..++. +++++.|+++|+++
T Consensus 295 G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 295 GLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred CCeEEcccccCCHHHHHHHHhcC
Confidence 99999987 89999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=6.5e-22 Score=190.60 Aligned_cols=321 Identities=16% Similarity=0.156 Sum_probs=197.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHH
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGF-SVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAI 94 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh-~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
++|++...++-||+.|.++|+++|.++|+ +|.++.+....+.... ...++.++.++.+-...... .. .+...
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~---~~~~~~~~~I~~~~~~~~~~---~~-~~~~~ 73 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV---KQYGIEFELIPSGGLRRKGS---LK-LLKAP 73 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec---cccCceEEEEecccccccCc---HH-HHHHH
Confidence 36888888888999999999999999999 5777766544333322 33588888887433222111 11 22222
Q ss_pred Hhhcc--hHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCc--cchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhcc
Q 012151 95 NGKCI--MPFRDCLAEILMKSKADQNKDSSPCCLITDAFW--FFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERA 170 (470)
Q Consensus 95 ~~~~~--~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 170 (470)
.+.+. .....+++++ +||+|+.-..+ ..+..+|..++||++..-.-
T Consensus 74 ~~~~~~~~~a~~il~~~------------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn------------------ 123 (357)
T COG0707 74 FKLLKGVLQARKILKKL------------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN------------------ 123 (357)
T ss_pred HHHHHHHHHHHHHHHHc------------CCCEEEecCCccccHHHHHHHhCCCCEEEEecC------------------
Confidence 22222 1223345554 99999996555 44678899999999984221
Q ss_pred CCCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccC-CCCee
Q 012151 171 YLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYL-SIPIF 249 (470)
Q Consensus 171 ~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~-~~~v~ 249 (470)
..+++ .++.+ ...++. +..+++..+ ... +.++.
T Consensus 124 ------------~~~G~---ank~~---------------------~~~a~~-V~~~f~~~~---------~~~~~~~~~ 157 (357)
T COG0707 124 ------------AVPGL---ANKIL---------------------SKFAKK-VASAFPKLE---------AGVKPENVV 157 (357)
T ss_pred ------------CCcch---hHHHh---------------------HHhhce-eeecccccc---------ccCCCCceE
Confidence 11111 00000 011111 222332211 111 13477
Q ss_pred eeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCC
Q 012151 250 PIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSR--MPFLWVVRPGLVSGA 327 (470)
Q Consensus 250 ~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~--~~~i~~~~~~~~~~~ 327 (470)
++|-...+.-. . .+.. -...... .++++|+|.-||+... .+-+.+.+++..+. ..++..++.+.
T Consensus 158 ~tG~Pvr~~~~---~-~~~~---~~~~~~~-~~~~~ilV~GGS~Ga~--~ln~~v~~~~~~l~~~~~v~~~~G~~~---- 223 (357)
T COG0707 158 VTGIPVRPEFE---E-LPAA---EVRKDGR-LDKKTILVTGGSQGAK--ALNDLVPEALAKLANRIQVIHQTGKND---- 223 (357)
T ss_pred EecCcccHHhh---c-cchh---hhhhhcc-CCCcEEEEECCcchhH--HHHHHHHHHHHHhhhCeEEEEEcCcch----
Confidence 88865543111 1 1111 1122221 2678999999999752 12233444444443 56666664431
Q ss_pred cccCCCchhHHHHhc-CC-ceeeeccChHh-hhccCCcceeecccCchhhHHhhhcCCceecCCCc----cchhhhHHHH
Q 012151 328 EWVEPLPKGFLEMLD-GR-GCIVKWAPQQE-VLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYL----PDQMVNARYV 400 (470)
Q Consensus 328 ~~~~~~p~~~~~~~~-~~-~~~~~~~p~~~-lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~----~DQ~~na~rv 400 (470)
.+.+...+. .+ +.+.+|...+. +|+.+++ +||++|.+|+.|++++|+|+|.+|.. .||..||+.+
T Consensus 224 ------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l 295 (357)
T COG0707 224 ------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL 295 (357)
T ss_pred ------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH
Confidence 122222222 22 56779988666 9988888 99999999999999999999999964 3899999999
Q ss_pred HhhhheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 012151 401 SHFWRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDF 448 (470)
Q Consensus 401 ~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 448 (470)
+++ |.|..++. ++|.+.|.+.|.+++++ .++..+|++..++
T Consensus 296 ~~~-gaa~~i~~~~lt~~~l~~~i~~l~~~------~~~l~~m~~~a~~ 337 (357)
T COG0707 296 EKA-GAALVIRQSELTPEKLAELILRLLSN------PEKLKAMAENAKK 337 (357)
T ss_pred HhC-CCEEEeccccCCHHHHHHHHHHHhcC------HHHHHHHHHHHHh
Confidence 995 99999998 99999999999999997 3445555555544
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=2.9e-22 Score=194.01 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=92.3
Q ss_pred CCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccC--hHhhhcc
Q 012151 282 PKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAP--QQEVLAH 359 (470)
Q Consensus 282 ~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p--~~~lL~~ 359 (470)
+++.|++.+|+.. ...+++++++.+. +.+++.... .... ..++|+.+.+|.| ..+.|+.
T Consensus 187 ~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~--------~~~~----~~~~~v~~~~~~~~~~~~~l~~ 247 (321)
T TIGR00661 187 GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYE--------VAKN----SYNENVEIRRITTDNFKELIKN 247 (321)
T ss_pred CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCC--------CCcc----ccCCCEEEEECChHHHHHHHHh
Confidence 3456777778763 2456777877753 222322111 0111 2245668889997 4557777
Q ss_pred CCcceeecccCchhhHHhhhcCCceecCCCcc--chhhhHHHHHhhhheeEEcCC-cccHHHHHHHHHHHhccchhHHHH
Q 012151 360 PAVGGFWTHSGWNSTLESMCEGVPMICQPYLP--DQMVNARYVSHFWRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMR 436 (470)
Q Consensus 360 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~ 436 (470)
+++ +|||||.+|++||+++|+|+|++|... ||..||+.+++ +|+|+.++. ++ ++.+++.++++| +.|+
T Consensus 248 ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~---~~~~~~~~~~~~---~~~~ 318 (321)
T TIGR00661 248 AEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL---RLLEAILDIRNM---KRYK 318 (321)
T ss_pred CCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH---HHHHHHHhcccc---cccc
Confidence 777 999999999999999999999999855 89999999999 599999988 44 667777788887 5554
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.85 E-value=3.2e-19 Score=175.86 Aligned_cols=340 Identities=14% Similarity=0.101 Sum_probs=202.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC--cccccccCCCCCeeEEecCCC-CCCCcccccCHHHHHH
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF--SSTNYFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFT 92 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~--~~~~~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (470)
|||+|+..+..||...++.||+.|.++||+|++++.+... ..... .|++++.++.. .... .....+.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~-----~~~~~l~ 71 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK-----AGIEFHFIPSGGLRRK-----GSLANLK 71 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc-----CCCcEEEEeccCcCCC-----ChHHHHH
Confidence 4699999888899999999999999999999999985521 12221 47777766521 1111 1111111
Q ss_pred HHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCc--cchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhcc
Q 012151 93 AINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFW--FFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERA 170 (470)
Q Consensus 93 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 170 (470)
..... ...+..+ .++.++ .+||+|++.... +.+..++...++|+|.......
T Consensus 72 ~~~~~-~~~~~~~-~~~ik~--------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---------------- 125 (357)
T PRK00726 72 APFKL-LKGVLQA-RKILKR--------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV---------------- 125 (357)
T ss_pred HHHHH-HHHHHHH-HHHHHh--------cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC----------------
Confidence 11111 1111112 222221 489999999532 4455678888999986311100
Q ss_pred CCCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCCCeee
Q 012151 171 YLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIFP 250 (470)
Q Consensus 171 ~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~~ 250 (470)
++ ...+.. ...++.++..+...+. . .-+.++.+
T Consensus 126 --------------~~------------------~~~r~~------~~~~d~ii~~~~~~~~--------~-~~~~~i~v 158 (357)
T PRK00726 126 --------------PG------------------LANKLL------ARFAKKVATAFPGAFP--------E-FFKPKAVV 158 (357)
T ss_pred --------------cc------------------HHHHHH------HHHhchheECchhhhh--------c-cCCCCEEE
Confidence 00 000000 0112223332222111 1 11256888
Q ss_pred eccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCC--CEEEEEcCCCCCCCc
Q 012151 251 IGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRM--PFLWVVRPGLVSGAE 328 (470)
Q Consensus 251 vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~--~~i~~~~~~~~~~~~ 328 (470)
+|........ . .+.. -.+ +...++.++|++..|+.. .......+.+|+++... .+++.++.+.
T Consensus 159 i~n~v~~~~~---~-~~~~---~~~-~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~~~~~~~~~~~~G~g~----- 223 (357)
T PRK00726 159 TGNPVREEIL---A-LAAP---PAR-LAGREGKPTLLVVGGSQG--ARVLNEAVPEALALLPEALQVIHQTGKGD----- 223 (357)
T ss_pred ECCCCChHhh---c-ccch---hhh-ccCCCCCeEEEEECCcHh--HHHHHHHHHHHHHHhhhCcEEEEEcCCCc-----
Confidence 8866543211 0 0000 011 121234456766555543 12223334477766543 3444554432
Q ss_pred ccCCCchhHHHH--hcCCceeeecc-ChHhhhccCCcceeecccCchhhHHhhhcCCceecCCC----ccchhhhHHHHH
Q 012151 329 WVEPLPKGFLEM--LDGRGCIVKWA-PQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPY----LPDQMVNARYVS 401 (470)
Q Consensus 329 ~~~~~p~~~~~~--~~~~~~~~~~~-p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~ 401 (470)
. +.+.+. .+-++.+.+|+ +..++|+.+++ +|+|+|.++++||+++|+|+|++|. ..+|..|+..+.
T Consensus 224 ----~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~ 296 (357)
T PRK00726 224 ----L-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALV 296 (357)
T ss_pred ----H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH
Confidence 1 222211 22236677888 45679988888 9999999999999999999999997 468999999999
Q ss_pred hhhheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 402 HFWRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 402 ~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
+. |.|..++. +++++.|+++|+++++| ++++++..+-++++.+. .+..+.++.+++.++
T Consensus 297 ~~-~~g~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 297 DA-GAALLIPQSDLTPEKLAEKLLELLSD---PERLEAMAEAARALGKP----DAAERLADLIEELAR 356 (357)
T ss_pred HC-CCEEEEEcccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcCCc----CHHHHHHHHHHHHhh
Confidence 95 99999987 77899999999999999 77776666655555444 777778887777765
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.81 E-value=1.3e-17 Score=163.83 Aligned_cols=316 Identities=16% Similarity=0.113 Sum_probs=184.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCC-CCCCcccccCHHHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFTAIN 95 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (470)
+|++...++.||....+.||+.|.++||+|++++.......... ...++++..++-. .... .....+....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 72 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLV---PKAGIPLHTIPVGGLRRK-----GSLKKLKAPF 72 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcc---cccCCceEEEEecCcCCC-----ChHHHHHHHH
Confidence 48888888889999999999999999999999987543211110 1246777666521 1111 1111111111
Q ss_pred hh--cchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCc--cchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccC
Q 012151 96 GK--CIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFW--FFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAY 171 (470)
Q Consensus 96 ~~--~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 171 (470)
.. ....+...+++ .+||+|+++... ..+..+|...++|++......
T Consensus 73 ~~~~~~~~~~~~i~~------------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------------------ 122 (350)
T cd03785 73 KLLKGVLQARKILKK------------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------------------ 122 (350)
T ss_pred HHHHHHHHHHHHHHh------------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC------------------
Confidence 10 11122222332 489999987432 445677889999998621100
Q ss_pred CCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCCCeeee
Q 012151 172 LPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIFPI 251 (470)
Q Consensus 172 ~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~~v 251 (470)
. ++ .... . ....++.++..+....+. . . +.++.++
T Consensus 123 --------~----~~-------------------~~~~---~--~~~~~~~vi~~s~~~~~~-----~-~---~~~~~~i 157 (350)
T cd03785 123 --------V----PG-------------------LANR---L--LARFADRVALSFPETAKY-----F-P---KDKAVVT 157 (350)
T ss_pred --------C----cc-------------------HHHH---H--HHHhhCEEEEcchhhhhc-----C-C---CCcEEEE
Confidence 0 00 0000 0 012245555555433221 0 1 2457788
Q ss_pred ccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCc
Q 012151 252 GPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSGAE 328 (470)
Q Consensus 252 Gpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~~~ 328 (470)
|........ . +.+ ..+.+...+++++|++..|+... ......+.++++.+ +..+++.++.+.
T Consensus 158 ~n~v~~~~~---~--~~~---~~~~~~~~~~~~~i~~~~g~~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G~g~----- 222 (350)
T cd03785 158 GNPVREEIL---A--LDR---ERARLGLRPGKPTLLVFGGSQGA--RAINEAVPEALAELLRKRLQVIHQTGKGD----- 222 (350)
T ss_pred CCCCchHHh---h--hhh---hHHhcCCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhccCeEEEEEcCCcc-----
Confidence 865433110 0 011 01222222345566666666642 22222233444443 334455554431
Q ss_pred ccCCCchhHHHHhcCCceeeecc-ChHhhhccCCcceeecccCchhhHHhhhcCCceecCCC----ccchhhhHHHHHhh
Q 012151 329 WVEPLPKGFLEMLDGRGCIVKWA-PQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPY----LPDQMVNARYVSHF 403 (470)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~~~~~~-p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~~~ 403 (470)
.+.+.+.+.+ ..+|+.+.+|+ +..++|+.+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+.
T Consensus 223 -~~~l~~~~~~-~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~ 298 (350)
T cd03785 223 -LEEVKKAYEE-LGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA 298 (350)
T ss_pred -HHHHHHHHhc-cCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC
Confidence 1112222211 13678888998 56669988888 9999999999999999999999986 46799999999994
Q ss_pred hheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHH
Q 012151 404 WRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRAR 438 (470)
Q Consensus 404 ~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~ 438 (470)
|.|..++. +.+.++|.++|+++++| ++.+++
T Consensus 299 -g~g~~v~~~~~~~~~l~~~i~~ll~~---~~~~~~ 330 (350)
T cd03785 299 -GAAVLIPQEELTPERLAAALLELLSD---PERLKA 330 (350)
T ss_pred -CCEEEEecCCCCHHHHHHHHHHHhcC---HHHHHH
Confidence 99999987 56899999999999998 554443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.74 E-value=1.5e-15 Score=149.18 Aligned_cols=321 Identities=16% Similarity=0.125 Sum_probs=175.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHH
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAIN 95 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (470)
|+|+|++.+..||+.....||++|.++||+|++++.+.....-.. ...|++++.++-.-... .+....+....
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~---~~~g~~~~~i~~~~~~~----~~~~~~l~~~~ 73 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLV---PKAGIEFYFIPVGGLRR----KGSFRLIKTPL 73 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccc---ccCCCceEEEeccCcCC----CChHHHHHHHH
Confidence 479999999999999888999999999999999987432111000 12577777665211111 11222222111
Q ss_pred hhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCc--cchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCCC
Q 012151 96 GKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFW--FFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLP 173 (470)
Q Consensus 96 ~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 173 (470)
.. ...+..+ .++.++ .+||+|++.... ..+..++...++|++.......
T Consensus 74 ~~-~~~~~~l-~~~i~~--------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------- 124 (348)
T TIGR01133 74 KL-LKAVFQA-RRILKK--------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV------------------- 124 (348)
T ss_pred HH-HHHHHHH-HHHHHh--------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC-------------------
Confidence 11 1111112 222222 489999997543 3345578888999974211000
Q ss_pred CCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCCCeeeecc
Q 012151 174 VQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIFPIGP 253 (470)
Q Consensus 174 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~~vGp 253 (470)
++. ..+. .....+.++..+... +..+ ...++|.
T Consensus 125 -----------~~~------------------~~~~------~~~~~d~ii~~~~~~----------~~~~--~~~~i~n 157 (348)
T TIGR01133 125 -----------PGL------------------TNKL------LSRFAKKVLISFPGA----------KDHF--EAVLVGN 157 (348)
T ss_pred -----------ccH------------------HHHH------HHHHhCeeEECchhH----------hhcC--CceEEcC
Confidence 000 0000 012244455544322 1111 2345554
Q ss_pred CCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCccc
Q 012151 254 LHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSGAEWV 330 (470)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~~~~~ 330 (470)
-...... ..+.. .+++...+++++|.+..|+... ......+.+|++.+ +..+++..+.+.
T Consensus 158 ~v~~~~~----~~~~~----~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~------- 220 (348)
T TIGR01133 158 PVRQEIR----SLPVP----RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND------- 220 (348)
T ss_pred CcCHHHh----cccch----hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch-------
Confidence 3322100 00001 1122212234455444455432 22223334555443 345554443221
Q ss_pred CCCchhHHHHhcCC--ceeeecc--ChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCc---cchhhhHHHHHhh
Q 012151 331 EPLPKGFLEMLDGR--GCIVKWA--PQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYL---PDQMVNARYVSHF 403 (470)
Q Consensus 331 ~~~p~~~~~~~~~~--~~~~~~~--p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~---~DQ~~na~rv~~~ 403 (470)
. +.+.+...+. ..++.|. +..++|+.+++ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+.+
T Consensus 221 --~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~- 294 (348)
T TIGR01133 221 --L-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED- 294 (348)
T ss_pred --H-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-
Confidence 1 2222222211 1233343 55678988888 99999988999999999999999864 478889999999
Q ss_pred hheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 012151 404 WRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDF 448 (470)
Q Consensus 404 ~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 448 (470)
.|.|..++. +.++++|+++++++++| ++.++ +|++..++
T Consensus 295 ~~~G~~~~~~~~~~~~l~~~i~~ll~~---~~~~~---~~~~~~~~ 334 (348)
T TIGR01133 295 LGAGLVIRQKELLPEKLLEALLKLLLD---PANLE---AMAEAARK 334 (348)
T ss_pred CCCEEEEecccCCHHHHHHHHHHHHcC---HHHHH---HHHHHHHh
Confidence 599999877 66899999999999998 55544 34444443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.71 E-value=1.1e-15 Score=151.14 Aligned_cols=351 Identities=11% Similarity=-0.020 Sum_probs=195.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHh
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAING 96 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (470)
+|+|...++.||+.|. +|+++|.++|++|+|+..... ..++.+.. .++.+..++ ...+.+.+..+.+
T Consensus 7 ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-~~~~~~~l~---------v~G~~~~l~~~~~ 73 (385)
T TIGR00215 7 TIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-VLYSMEELS---------VMGLREVLGRLGR 73 (385)
T ss_pred eEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-cccChHHhh---------hccHHHHHHHHHH
Confidence 7999999999999999 999999999999999987432 22220000 123333332 1122222222221
Q ss_pred hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCc-cchHH--HHhhcCCCeEEEecccHHHHHHHHhchhhhhccCCC
Q 012151 97 KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFW-FFTHT--VAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLP 173 (470)
Q Consensus 97 ~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~-~~~~~--vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 173 (470)
....+....+.+.+ .+||+||.-... +.... .|+.+|||++.+.+.-. +++
T Consensus 74 -~~~~~~~~~~~l~~---------~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~--------------waw-- 127 (385)
T TIGR00215 74 -LLKIRKEVVQLAKQ---------AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQV--------------WAW-- 127 (385)
T ss_pred -HHHHHHHHHHHHHh---------cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcH--------------hhc--
Confidence 11222233333332 499999864432 22223 78899999997532100 000
Q ss_pred CCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCCCeeeecc
Q 012151 174 VQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIFPIGP 253 (470)
Q Consensus 174 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~~vGp 253 (470)
. .++ .+.+. ...+.++..+..+-++ + +. .+.+..++|.
T Consensus 128 -----------------~--------~~~----~r~l~------~~~d~v~~~~~~e~~~--~----~~-~g~~~~~vGn 165 (385)
T TIGR00215 128 -----------------R--------KWR----AKKIE------KATDFLLAILPFEKAF--Y----QK-KNVPCRFVGH 165 (385)
T ss_pred -----------------C--------cch----HHHHH------HHHhHhhccCCCcHHH--H----Hh-cCCCEEEECC
Confidence 0 000 01111 1122222222222221 1 22 2246778885
Q ss_pred CCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCc
Q 012151 254 LHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANS-----RMPFLWVVRPGLVSGAE 328 (470)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~-----~~~~i~~~~~~~~~~~~ 328 (470)
...+... ...+.. ....+-+.-.+++++|.+--||....-......+++|++.+ +.++++...... +
T Consensus 166 Pv~~~~~---~~~~~~-~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~--~-- 237 (385)
T TIGR00215 166 PLLDAIP---LYKPDR-KSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK--R-- 237 (385)
T ss_pred chhhhcc---ccCCCH-HHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch--h--
Confidence 5533111 000111 11222233234567888878888652233455566665543 233444332210 0
Q ss_pred ccCCCchhHHHHhcCCceeeecc-ChHhhhccCCcceeecccCchhhHHhhhcCCceecC----CCcc---------chh
Q 012151 329 WVEPLPKGFLEMLDGRGCIVKWA-PQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQ----PYLP---------DQM 394 (470)
Q Consensus 329 ~~~~~p~~~~~~~~~~~~~~~~~-p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~----P~~~---------DQ~ 394 (470)
...-+.+.+....+..+..+. +...+|..+++ +|+-+|..|+ |++++|+|+|++ |+.. .|.
T Consensus 238 --~~~~~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~ 312 (385)
T TIGR00215 238 --RLQFEQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYI 312 (385)
T ss_pred --HHHHHHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCee
Confidence 000011222221122232221 34458888888 9999999888 999999999999 7642 388
Q ss_pred hhHHHHHhhhheeEEcCC-cccHHHHHHHHHHHhccchhH----HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012151 395 VNARYVSHFWRVGLHSEW-KLERMEIERAIRRVMVEAEGQ----EMRARIMHLKEKVDFCLRKGGSSHQSLERLID 465 (470)
Q Consensus 395 ~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~----~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
.|+..+..+ ++...+.. +.|++.|.+.+.++++| + +++++.++--+++++.+.+.+.+.++.+.+++
T Consensus 313 ~~~nil~~~-~~~pel~q~~~~~~~l~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 313 SLPNILANR-LLVPELLQEECTPHPLAIALLLLLEN---GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred eccHHhcCC-ccchhhcCCCCCHHHHHHHHHHHhcC---CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 899999995 99999876 89999999999999999 6 56655555555555555555778888877765
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.71 E-value=4.5e-15 Score=136.56 Aligned_cols=334 Identities=15% Similarity=0.161 Sum_probs=197.8
Q ss_pred CCEEEEEcCCCc--cChHHHHHHHHHHHhC--CCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCC--CcccccCHH
Q 012151 15 GRRVILFPLPFQ--GHINPMLHLASILYSK--GFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSE--TEASVEDVA 88 (470)
Q Consensus 15 ~~~il~~~~~~~--GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~--~~~~~~~~~ 88 (470)
.+||+|++.-.. ||+..++.+|++|++. |.+|++++......-.. ...|++|+.+|..... ++....+..
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~----~~~gVd~V~LPsl~k~~~G~~~~~d~~ 84 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP----GPAGVDFVKLPSLIKGDNGEYGLVDLD 84 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC----CcccCceEecCceEecCCCceeeeecC
Confidence 459999998765 8999999999999998 99999999865544443 2279999999943222 111111111
Q ss_pred HHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhh
Q 012151 89 VFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRE 168 (470)
Q Consensus 89 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 168 (470)
--...+.+.-...+....+. .+||++|+|.+-++. -.++ .|+. .+.. .
T Consensus 85 ~~l~e~~~~Rs~lil~t~~~------------fkPDi~IVd~~P~Gl---r~EL-~ptL-----------~yl~-----~ 132 (400)
T COG4671 85 GDLEETKKLRSQLILSTAET------------FKPDIFIVDKFPFGL---RFEL-LPTL-----------EYLK-----T 132 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHh------------cCCCEEEEeccccch---hhhh-hHHH-----------HHHh-----h
Confidence 11222332222333333333 499999999755441 1111 0111 0110 0
Q ss_pred ccCCCCCCCCCCcccCCCCCCCCccccCcc--cccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCC
Q 012151 169 RAYLPVQDHQSLETPVTEFPPLRVKDIQVL--ETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSI 246 (470)
Q Consensus 169 ~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~ 246 (470)
.+ ...+-++ -..++.+.. ...+.+...+... ...+.+++...|.|--+.-..-+.+....
T Consensus 133 ~~----------t~~vL~l--r~i~D~p~~~~~~w~~~~~~~~I~------r~yD~V~v~GdP~f~d~~~~~~~~~~i~~ 194 (400)
T COG4671 133 TG----------TRLVLGL--RSIRDIPQELEADWRRAETVRLIN------RFYDLVLVYGDPDFYDPLTEFPFAPAIRA 194 (400)
T ss_pred cC----------Ccceeeh--HhhhhchhhhccchhhhHHHHHHH------HhheEEEEecCccccChhhcCCccHhhhh
Confidence 00 0000000 000111111 0111122222222 22455666666665533111000222225
Q ss_pred CeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhC-CCC--EEEEEcCCC
Q 012151 247 PIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANS-RMP--FLWVVRPGL 323 (470)
Q Consensus 247 ~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~-~~~--~i~~~~~~~ 323 (470)
.+.|+|.+... . +....|.. . .+.+..|+||-|... ...+.+...++|-... +.+ .++++++.
T Consensus 195 k~~ytG~vq~~--~-~~~~~p~~--------~-~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~- 260 (400)
T COG4671 195 KMRYTGFVQRS--L-PHLPLPPH--------E-APEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPF- 260 (400)
T ss_pred heeEeEEeecc--C-cCCCCCCc--------C-CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCC-
Confidence 69999999221 1 01111211 1 133457889988776 3566777777776553 333 55555543
Q ss_pred CCCCcccCCCch----hHHHHhc--CCceeeeccChH-hhhccCCcceeecccCchhhHHhhhcCCceecCCCcc---ch
Q 012151 324 VSGAEWVEPLPK----GFLEMLD--GRGCIVKWAPQQ-EVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLP---DQ 393 (470)
Q Consensus 324 ~~~~~~~~~~p~----~~~~~~~--~~~~~~~~~p~~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~---DQ 393 (470)
.|. .+....+ +++.+.+|-.+. .++..++. +|+-||+||++|-|.+|+|.|++|... ||
T Consensus 261 ---------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQ 329 (400)
T COG4671 261 ---------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQ 329 (400)
T ss_pred ---------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHH
Confidence 553 3334444 667888887655 48867777 999999999999999999999999864 89
Q ss_pred hhhHHHHHhhhheeEEcCC-cccHHHHHHHHHHHhc
Q 012151 394 MVNARYVSHFWRVGLHSEW-KLERMEIERAIRRVMV 428 (470)
Q Consensus 394 ~~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl~ 428 (470)
-.-|.|+++ +|+--++-. ++++..|+++|...++
T Consensus 330 liRA~Rl~~-LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 330 LIRAQRLEE-LGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HHHHHHHHh-cCcceeeCcccCChHHHHHHHHhccc
Confidence 999999999 899999887 8999999999999988
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.64 E-value=2.6e-14 Score=142.05 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=109.9
Q ss_pred CCCeEEEEEcCcccccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCcccCCCchhHH---HHhcCCceeeeccChH-h
Q 012151 281 TPKSVVYISFGSVIAINKDGFLEIAWGVANS-RMPFLWVVRPGLVSGAEWVEPLPKGFL---EMLDGRGCIVKWAPQQ-E 355 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~p~~-~ 355 (470)
+++++|++..|+... .+.+..+++++.+. +.+++++.+.+. .+.+.+. +..++++.+.+|+++. +
T Consensus 200 ~~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~--------~~~~~l~~~~~~~~~~v~~~g~~~~~~~ 269 (380)
T PRK13609 200 PNKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNE--------ALKQSLEDLQETNPDALKVFGYVENIDE 269 (380)
T ss_pred CCCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCH--------HHHHHHHHHHhcCCCcEEEEechhhHHH
Confidence 345677777787753 22456677777654 456666554321 0112222 2223578888999864 6
Q ss_pred hhccCCcceeecccCchhhHHhhhcCCceecC-CCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHH
Q 012151 356 VLAHPAVGGFWTHSGWNSTLESMCEGVPMICQ-PYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQE 434 (470)
Q Consensus 356 lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~ 434 (470)
++..+++ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+.+. |+|+.. -+.++|.++|.++++| ++
T Consensus 270 l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~---~~~~~l~~~i~~ll~~---~~ 340 (380)
T PRK13609 270 LFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI---RDDEEVFAKTEALLQD---DM 340 (380)
T ss_pred HHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE---CCHHHHHHHHHHHHCC---HH
Confidence 9988888 99999988999999999999985 6777788999999994 998764 3678999999999998 55
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 435 MRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 435 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
.+++ |++..++. ....+..+.++.+++.+
T Consensus 341 ~~~~---m~~~~~~~-~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 341 KLLQ---MKEAMKSL-YLPEPADHIVDDILAEN 369 (380)
T ss_pred HHHH---HHHHHHHh-CCCchHHHHHHHHHHhh
Confidence 5443 33333332 12245555555555543
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.63 E-value=2.5e-14 Score=135.09 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=77.9
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcccCCCchhHHHHh--cCCceeeeccChH-hhh
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANS--RMPFLWVVRPGLVSGAEWVEPLPKGFLEML--DGRGCIVKWAPQQ-EVL 357 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~p~~-~lL 357 (470)
.+.|+++||..-. ......+++++++. +.++.++++... ...+.+.+.. ..|+.+..+++++ ++|
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~--------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN--------PNLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC--------cCHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 3578999996653 33556677888765 456777775542 1222232222 3577888999976 699
Q ss_pred ccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHH
Q 012151 358 AHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARY 399 (470)
Q Consensus 358 ~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 399 (470)
..+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 88998 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.60 E-value=1.3e-13 Score=137.03 Aligned_cols=347 Identities=12% Similarity=0.046 Sum_probs=173.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHH
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAIN 95 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (470)
|+|+|+..++.||+.|.. ++++|.++++++.++..... ....... . .++.++.++ ...+.+.+..+.
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~l~---------~~g~~~~~~~~~ 68 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP-RMQAAGC-E-SLFDMEELA---------VMGLVEVLPRLP 68 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH-HHHhCCC-c-cccCHHHhh---------hccHHHHHHHHH
Confidence 579999999999999999 99999998888888775332 1111100 0 122222222 112222222221
Q ss_pred hh--cchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCC-ccch--HHHHhhcCCCeEEEecccHHHHHHHHhchhhhhcc
Q 012151 96 GK--CIMPFRDCLAEILMKSKADQNKDSSPCCLITDAF-WFFT--HTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERA 170 (470)
Q Consensus 96 ~~--~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~-~~~~--~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 170 (470)
.. ....+...+++ .+||+|+.-.. ..+. ...|...|||++.......
T Consensus 69 ~~~~~~~~~~~~l~~------------~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~---------------- 120 (380)
T PRK00025 69 RLLKIRRRLKRRLLA------------EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV---------------- 120 (380)
T ss_pred HHHHHHHHHHHHHHH------------cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch----------------
Confidence 11 11122223333 48999876432 2333 3346778999886421100
Q ss_pred CCCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCCCeee
Q 012151 171 YLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIFP 250 (470)
Q Consensus 171 ~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~~ 250 (470)
+ ...++ ..+. ....++.++..+...-+. + .. .+.++.+
T Consensus 121 ---------~-~~~~~-------------------~~~~------~~~~~d~i~~~~~~~~~~--~----~~-~g~~~~~ 158 (380)
T PRK00025 121 ---------W-AWRQG-------------------RAFK------IAKATDHVLALFPFEAAF--Y----DK-LGVPVTF 158 (380)
T ss_pred ---------h-hcCch-------------------HHHH------HHHHHhhheeCCccCHHH--H----Hh-cCCCeEE
Confidence 0 00000 0000 112233444434322221 1 22 2234778
Q ss_pred eccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCC
Q 012151 251 IGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANS-----RMPFLWVVRPGLVS 325 (470)
Q Consensus 251 vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~-----~~~~i~~~~~~~~~ 325 (470)
+|....+... ..+.. ....+-+.-.+++++|++..||...........++++++.+ +.+++++.+.+.
T Consensus 159 ~G~p~~~~~~----~~~~~-~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~-- 231 (380)
T PRK00025 159 VGHPLADAIP----LLPDR-AAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK-- 231 (380)
T ss_pred ECcCHHHhcc----cccCh-HHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh--
Confidence 8844332110 00111 11323333223455666766765432122344556665443 234555543110
Q ss_pred CCcccCCCchhHHHHhcC----CceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCcc--------ch
Q 012151 326 GAEWVEPLPKGFLEMLDG----RGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLP--------DQ 393 (470)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~----~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--------DQ 393 (470)
..+.+.+...+ ++.+.. -.-..+++.+++ +|+.+|.+++ ||+++|+|+|++|... .|
T Consensus 232 -------~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~ 300 (380)
T PRK00025 232 -------RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRL 300 (380)
T ss_pred -------hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHH
Confidence 11222222211 222222 124568888888 9999998887 9999999999985432 22
Q ss_pred hhh-----HHHHHhhhheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 394 MVN-----ARYVSHFWRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 394 ~~n-----a~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
..| +..+.+. +++..+.. ..+++.|++++.++++| ++.+++..+-.+.+++.. ..+++.+.++.+.+.+
T Consensus 301 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 301 VKVPYVSLPNLLAGR-ELVPELLQEEATPEKLARALLPLLAD---GARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred HcCCeeehHHHhcCC-CcchhhcCCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 222 2344442 44444443 67899999999999999 555443333322222222 2266667777766655
Q ss_pred H
Q 012151 468 L 468 (470)
Q Consensus 468 ~ 468 (470)
+
T Consensus 376 ~ 376 (380)
T PRK00025 376 K 376 (380)
T ss_pred h
Confidence 4
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.51 E-value=9.2e-16 Score=133.96 Aligned_cols=135 Identities=18% Similarity=0.179 Sum_probs=95.7
Q ss_pred EEEEEcCccccc-CHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccC-hHhhhccC
Q 012151 285 VVYISFGSVIAI-NKDGFLEIAWGVANS--RMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAP-QQEVLAHP 360 (470)
Q Consensus 285 ~I~vs~Gs~~~~-~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p-~~~lL~~~ 360 (470)
+|+|+.||.... -.+.+..++..+... ..+++++++...... ....+ ...+.++.+.+|.+ ..+++..+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~------~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEE------LKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHH------HCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHH------HHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 489999988642 111222233333332 467888876652111 11111 11125678899999 77799999
Q ss_pred CcceeecccCchhhHHhhhcCCceecCCCcc----chhhhHHHHHhhhheeEEcCC-cccHHHHHHHHHHHhcc
Q 012151 361 AVGGFWTHSGWNSTLESMCEGVPMICQPYLP----DQMVNARYVSHFWRVGLHSEW-KLERMEIERAIRRVMVE 429 (470)
Q Consensus 361 ~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~----DQ~~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~ 429 (470)
++ +|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+.. ..+.+.|.++|.+++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCHHHHHHHHHHHHcC
Confidence 98 999999999999999999999999998 999999999995 99999987 77899999999999998
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.50 E-value=3.2e-12 Score=127.29 Aligned_cols=165 Identities=15% Similarity=0.204 Sum_probs=111.3
Q ss_pred CCCeEEEEEcCcccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcccCCCchhHHHHh--cCCceeeeccChH-h
Q 012151 281 TPKSVVYISFGSVIAINKDGFLEIAWGVANS--RMPFLWVVRPGLVSGAEWVEPLPKGFLEML--DGRGCIVKWAPQQ-E 355 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~p~~-~ 355 (470)
+++++|++..|+... ...+..+++++.+. +.+++++.+.+. .+-+.+.+.. .+++.+.+|.++. +
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--------~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--------ELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--------HHHHHHHHHhccCCCeEEEeccchHHH
Confidence 456788888888862 23455555554332 345655554321 0112222222 2567888998654 4
Q ss_pred hhccCCcceeecccCchhhHHhhhcCCceecC-CCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHH
Q 012151 356 VLAHPAVGGFWTHSGWNSTLESMCEGVPMICQ-PYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQE 434 (470)
Q Consensus 356 lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~ 434 (470)
++..+++ +|+.+|..|+.||+++|+|+|++ |..+.|..|+..+++. |+|+... +.+++.++|.++++| ++
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~---~~~~l~~~i~~ll~~---~~ 340 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD---TPEEAIKIVASLTNG---NE 340 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC---CHHHHHHHHHHHhcC---HH
Confidence 8988888 99988888999999999999998 7767778999999995 9998754 678899999999998 43
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 435 MRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 435 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
..++|++.+++. ....+..+.++.+++.+.
T Consensus 341 ---~~~~m~~~~~~~-~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 341 ---QLTNMISTMEQD-KIKYATQTICRDLLDLIG 370 (391)
T ss_pred ---HHHHHHHHHHHh-cCCCCHHHHHHHHHHHhh
Confidence 334455555443 222555666666666554
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.47 E-value=1.6e-11 Score=121.93 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=83.6
Q ss_pred CCceeeeccChHh-hhccCCcceeecccCchhhHHhhhcCCceecCCCccchh-hhHHHHHhhhheeEEcCCcccHHHHH
Q 012151 343 GRGCIVKWAPQQE-VLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQM-VNARYVSHFWRVGLHSEWKLERMEIE 420 (470)
Q Consensus 343 ~~~~~~~~~p~~~-lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~-~na~rv~~~~G~G~~l~~~~~~~~l~ 420 (470)
.++.+.+|+++.. +|..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -++++|.
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---~~~~~la 338 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---ESPKEIA 338 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec---CCHHHHH
Confidence 4577889988544 8988888 999999999999999999999998777776 699999995 999865 4789999
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 421 RAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 421 ~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
++|.++++|. + +..++|++..++. ....++.+.++.+.+.+.
T Consensus 339 ~~i~~ll~~~--~---~~~~~m~~~~~~~-~~~~a~~~i~~~l~~~~~ 380 (382)
T PLN02605 339 RIVAEWFGDK--S---DELEAMSENALKL-ARPEAVFDIVHDLHELVR 380 (382)
T ss_pred HHHHHHHcCC--H---HHHHHHHHHHHHh-cCCchHHHHHHHHHHHhh
Confidence 9999999861 2 2233444444432 111445555566555543
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.47 E-value=4.5e-11 Score=118.55 Aligned_cols=351 Identities=11% Similarity=0.045 Sum_probs=192.9
Q ss_pred CCccChHHHHHHHHHHHh--CCCeEE---EEeCCCCCc--ccccccCCCCCeeEEecCC-CCCCCcccccCHHHHHHHHH
Q 012151 24 PFQGHINPMLHLASILYS--KGFSVT---IIHTDFNFS--STNYFSCNYPHFDFHSFPD-GFSETEASVEDVAVFFTAIN 95 (470)
Q Consensus 24 ~~~GH~~p~l~La~~L~~--rGh~V~---~~~~~~~~~--~~~~~~~~~~gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 95 (470)
-++|-=.-.++||++|.+ .|++|. ++......+ .+.. .| .+..+|. ++. ..+....+....
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~-----~g-~~~~~~sgg~~-----~~~~~~~~~~~~ 73 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI-----IG-PTKELPSGGFS-----YQSLRGLLRDLR 73 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce-----eC-CCCCCCCCCcc-----CCCHHHHHHHHH
Confidence 355666778899999998 699999 988863322 2222 34 5555552 222 123444444444
Q ss_pred h-hcchHHHH--HHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCC
Q 012151 96 G-KCIMPFRD--CLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYL 172 (470)
Q Consensus 96 ~-~~~~~l~~--~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (470)
+ .....+.. +++++.+ +||+||.-.-+. ...+|...|+|++++.+.-...... . .+..
T Consensus 74 ~gl~~~~~~~~~~~~~~~~----------~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~-----~--~~~~- 134 (396)
T TIGR03492 74 AGLVGLTLGQWRALRKWAK----------KGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWE-----S--GPRR- 134 (396)
T ss_pred hhHHHHHHHHHHHHHHHhh----------cCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeec-----C--CCCC-
Confidence 3 22222222 3444422 899999875444 8888999999999976641111000 0 0000
Q ss_pred CCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCCCeeeec
Q 012151 173 PVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSIPIFPIG 252 (470)
Q Consensus 173 p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~~v~~vG 252 (470)
+. .......++... ..+ +. ..-....++.++..+.. ...++ +. .+.++.++|
T Consensus 135 ~~---~~~~~~~~G~~~-----------~p~-e~------n~l~~~~a~~v~~~~~~--t~~~l----~~-~g~k~~~vG 186 (396)
T TIGR03492 135 SP---SDEYHRLEGSLY-----------LPW-ER------WLMRSRRCLAVFVRDRL--TARDL----RR-QGVRASYLG 186 (396)
T ss_pred cc---chhhhccCCCcc-----------CHH-HH------HHhhchhhCEEeCCCHH--HHHHH----HH-CCCeEEEeC
Confidence 11 112222222210 111 00 01111334444444422 22211 32 235799999
Q ss_pred cCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCCc
Q 012151 253 PLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANS----RMPFLWVVRPGLVSGAE 328 (470)
Q Consensus 253 pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~----~~~~i~~~~~~~~~~~~ 328 (470)
-...+.-. ... . .-+ .+++++|.+--||-.......+..++++++.+ +..+++.+.++..
T Consensus 187 nPv~d~l~------~~~-~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~---- 250 (396)
T TIGR03492 187 NPMMDGLE------PPE-R---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS---- 250 (396)
T ss_pred cCHHhcCc------ccc-c---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC----
Confidence 76655211 111 0 001 23346788888888653334455677777664 4567776633310
Q ss_pred ccCCCchhHHHHhc-------------------CCceeeecc-ChHhhhccCCcceeecccCchhhHHhhhcCCceecCC
Q 012151 329 WVEPLPKGFLEMLD-------------------GRGCIVKWA-PQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQP 388 (470)
Q Consensus 329 ~~~~~p~~~~~~~~-------------------~~~~~~~~~-p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P 388 (470)
.+.+.+... +++.+..+. +..+++..+++ +|+-+|..| .|++..|+|+|++|
T Consensus 251 -----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip 322 (396)
T TIGR03492 251 -----LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLP 322 (396)
T ss_pred -----HHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEe
Confidence 111111111 123444554 34569988888 999999766 99999999999999
Q ss_pred CccchhhhHHHHHhhh----heeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012151 389 YLPDQMVNARYVSHFW----RVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLI 464 (470)
Q Consensus 389 ~~~DQ~~na~rv~~~~----G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
....|. ||...++ . |.++.+.. .+.+.|.+++.++++| ++..++.. +..++.+.+.+.+.+.++.+.
T Consensus 323 ~~~~q~-na~~~~~-~~~l~g~~~~l~~-~~~~~l~~~l~~ll~d---~~~~~~~~---~~~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 323 GKGPQF-TYGFAEA-QSRLLGGSVFLAS-KNPEQAAQVVRQLLAD---PELLERCR---RNGQERMGPPGASARIAESIL 393 (396)
T ss_pred CCCCHH-HHHHHHh-hHhhcCCEEecCC-CCHHHHHHHHHHHHcC---HHHHHHHH---HHHHHhcCCCCHHHHHHHHHH
Confidence 877776 9877666 3 66666655 4569999999999998 55544333 222222223355555555554
Q ss_pred H
Q 012151 465 D 465 (470)
Q Consensus 465 ~ 465 (470)
+
T Consensus 394 ~ 394 (396)
T TIGR03492 394 K 394 (396)
T ss_pred H
Confidence 4
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.40 E-value=1.6e-09 Score=106.37 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=98.4
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhCC----CCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHh---h
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANSR----MPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQE---V 356 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~~----~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~---l 356 (470)
+.+++..|+... .+....++++++.+. ..++ .++.+. ..+.+. ...+++.+.+++++.+ +
T Consensus 197 ~~~i~~~G~~~~--~k~~~~~i~~~~~l~~~~~~~l~-i~G~~~---------~~~~~~-~~~~~v~~~g~~~~~~~~~~ 263 (364)
T cd03814 197 RPVLLYVGRLAP--EKNLEALLDADLPLRRRPPVRLV-IVGDGP---------ARARLE-ARYPNVHFLGFLDGEELAAA 263 (364)
T ss_pred CeEEEEEecccc--ccCHHHHHHHHHHhhhcCCceEE-EEeCCc---------hHHHHh-ccCCcEEEEeccCHHHHHHH
Confidence 456667777643 233444555555542 3333 333221 111111 3346778899998766 7
Q ss_pred hccCCcceeecccC----chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchh
Q 012151 357 LAHPAVGGFWTHSG----WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEG 432 (470)
Q Consensus 357 L~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~ 432 (470)
+..+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+++ .+.|...+. -+.++++++|.++++|
T Consensus 264 ~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~-~~~g~~~~~-~~~~~l~~~i~~l~~~--- 332 (364)
T cd03814 264 YASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTD-GENGLLVEP-GDAEAFAAALAALLAD--- 332 (364)
T ss_pred HHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcC-CcceEEcCC-CCHHHHHHHHHHHHcC---
Confidence 877887 887654 47899999999999986644 46667777 489988877 5778899999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 433 QEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 433 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
++.+++..+-+.+..+. -+..+..+++++.+
T Consensus 333 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 363 (364)
T cd03814 333 PELRRRMAARARAEAER----RSWEAFLDNLLEAY 363 (364)
T ss_pred HHHHHHHHHHHHHHHhh----cCHHHHHHHHHHhh
Confidence 55444333333222222 55566666666544
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.37 E-value=6.1e-13 Score=112.38 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=81.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHhh
Q 012151 18 VILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAINGK 97 (470)
Q Consensus 18 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (470)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++ .|++|.+++.. ..... .......+....+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 73 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-----AGLEFVPIPGD-SRLPR-SLEPLANLRRLARL 73 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-----TT-EEEESSSC-GGGGH-HHHHHHHHHCHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-----cCceEEEecCC-cCcCc-ccchhhhhhhHHHH
Confidence 7899999999999999999999999999999999999998888 99999999855 00000 00011111111110
Q ss_pred --cchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccH
Q 012151 98 --CIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGV 154 (470)
Q Consensus 98 --~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~ 154 (470)
....+.+.+++.....-.+-.....+|+++.+.....+..+|++++||.+.....+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 74 IRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 011111222222211000000013678888887778899999999999999766543
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.35 E-value=5.5e-09 Score=106.69 Aligned_cols=125 Identities=13% Similarity=0.085 Sum_probs=82.9
Q ss_pred EEEEEcCcccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCcccCCCchhHHHHh-cCCceeeeccChHh---hhcc
Q 012151 285 VVYISFGSVIAINKDGFLEIAWGVANSR-MPFLWVVRPGLVSGAEWVEPLPKGFLEML-DGRGCIVKWAPQQE---VLAH 359 (470)
Q Consensus 285 ~I~vs~Gs~~~~~~~~~~~i~~al~~~~-~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~p~~~---lL~~ 359 (470)
.+++..|+.. ..+.+..++++++..+ .+++ .++.+. ..+.+.+.. ..++.+.+++++.+ +|..
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~-ivG~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLA-FVGDGP---------YREELEKMFAGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEE-EEeCCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHHHH
Confidence 4455668875 3445667788887764 4444 333221 222232222 24677889998665 7777
Q ss_pred CCcceeecccC----chhhHHhhhcCCceecCCCccchhhhHHHHHh---hhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 360 PAVGGFWTHSG----WNSTLESMCEGVPMICQPYLPDQMVNARYVSH---FWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 360 ~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~---~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
+++ +|.-.. ..++.||+++|+|+|+.... .....+++ . +.|...+. -+.++++++|.++++|
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-GDVDDCVEKLETLLAD 400 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-CCHHHHHHHHHHHHhC
Confidence 887 885443 34788999999999986543 33444554 4 78888876 5789999999999998
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.33 E-value=2.2e-09 Score=105.03 Aligned_cols=129 Identities=18% Similarity=0.113 Sum_probs=82.4
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHh---h
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQE---V 356 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~---l 356 (470)
++.+++..|+... .+....++++++.+ +.++++ ++..... ..........+++.+.+++++.+ +
T Consensus 190 ~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i-~G~~~~~-------~~~~~~~~~~~~v~~~g~~~~~~~~~~ 259 (359)
T cd03823 190 GRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVI-VGNGLEL-------EEESYELEGDPRVEFLGAYPQEEIDDF 259 (359)
T ss_pred CceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEE-EcCchhh-------hHHHHhhcCCCeEEEeCCCCHHHHHHH
Confidence 4466677787753 23344555665554 344433 3322100 00000002346778889997666 5
Q ss_pred hccCCcceeecc----cC-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 357 LAHPAVGGFWTH----SG-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 357 L~~~~~~~~I~H----GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
+..+++ +|+. .| ..++.||+++|+|+|+.+. ..+...+.+. +.|...+. -+.+++++++.++++|
T Consensus 260 ~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 260 YAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-GDAEDLAAALERLIDD 329 (359)
T ss_pred HHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-CCHHHHHHHHHHHHhC
Confidence 777777 7732 33 4479999999999998554 4566777773 68888877 4689999999999998
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.27 E-value=2.7e-08 Score=99.55 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=61.0
Q ss_pred CCceeeeccChHh---hhccCCcceeec---ccC-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCccc
Q 012151 343 GRGCIVKWAPQQE---VLAHPAVGGFWT---HSG-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLE 415 (470)
Q Consensus 343 ~~~~~~~~~p~~~---lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 415 (470)
+++.+.+++|+.+ +|..+++ +|. +.| ..++.||+++|+|+|+. |.......+.+. ..|..++. -+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~-~~G~lv~~-~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDG-ENGLLVDF-FD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccC-CceEEcCC-CC
Confidence 5788889999776 5667787 653 223 24899999999999985 445566677763 67887776 57
Q ss_pred HHHHHHHHHHHhcc
Q 012151 416 RMEIERAIRRVMVE 429 (470)
Q Consensus 416 ~~~l~~ai~~vl~~ 429 (470)
+++++++|.++++|
T Consensus 353 ~~~la~~i~~ll~~ 366 (396)
T cd03818 353 PDALAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999998
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=9.2e-10 Score=98.92 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=108.4
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhc--CCceeeeccC-hHhhhcc
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLD--GRGCIVKWAP-QQEVLAH 359 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~p-~~~lL~~ 359 (470)
+.-|+||+|..- +......++..+.+.+..+-++++. ..+.++++.++.. +|+.+..... ...++..
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs--------~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke 227 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGS--------SNPTLKNLRKRAEKYPNINLYIDTNDMAELMKE 227 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecC--------CCcchhHHHHHHhhCCCeeeEecchhHHHHHHh
Confidence 345999998773 4456777888888888666666652 1234455555544 5555555555 4449988
Q ss_pred CCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHH
Q 012151 360 PAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARI 439 (470)
Q Consensus 360 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a 439 (470)
+++ .|+.|| .|+.|++.-|+|.+++|+...|---|...+. +|+-..+...++++.....+.++.+| ...+++.
T Consensus 228 ~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l 300 (318)
T COG3980 228 ADL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNL 300 (318)
T ss_pred cch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhh
Confidence 888 999888 5999999999999999999999999999999 69988888667888888888899998 6666554
Q ss_pred HHHH
Q 012151 440 MHLK 443 (470)
Q Consensus 440 ~~l~ 443 (470)
-.-.
T Consensus 301 ~~~~ 304 (318)
T COG3980 301 SFGS 304 (318)
T ss_pred hhcc
Confidence 4433
No 50
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.22 E-value=4.4e-08 Score=95.62 Aligned_cols=339 Identities=15% Similarity=0.054 Sum_probs=176.6
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHhhcchHHHHH
Q 012151 26 QGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAINGKCIMPFRDC 105 (470)
Q Consensus 26 ~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (470)
.|+...+..|++.|.+.||+|++++.......... .......... .. ........... .....+...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~---~~~~~~~~~~-----~~----~~~~~~~~~~~-~~~~~~~~~ 80 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEE---EVGGIVVVRP-----PP----LLRVRRLLLLL-LLALRLRRL 80 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCcee---eecCcceecC-----Cc----ccccchhHHHH-HHHHHHHHH
Confidence 58899999999999999999999998654433321 0011110000 00 00000000000 011111222
Q ss_pred HHHHHhcccCCCCCCCCCcEEEeCCCccchH--HHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCCCCCCCCCCccc
Q 012151 106 LAEILMKSKADQNKDSSPCCLITDAFWFFTH--TVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPVQDHQSLETP 183 (470)
Q Consensus 106 l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~--~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 183 (470)
+++ .++|+|+......... ..+...++|++.......... .. .
T Consensus 81 ~~~------------~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-----------~~-----~------- 125 (374)
T cd03801 81 LRR------------ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGR-----------PG-----N------- 125 (374)
T ss_pred hhh------------cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhc-----------cc-----c-------
Confidence 222 3899999886664433 478889999987543311110 00 0
Q ss_pred CCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCC---CeeeeccCCCCCCC
Q 012151 184 VTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSI---PIFPIGPLHKCSPA 260 (470)
Q Consensus 184 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~---~v~~vGpl~~~~~~ 260 (470)
. . ..................+.++..+....+.- ....+. ++..+..-.....-
T Consensus 126 -----~---~---------~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~ 182 (374)
T cd03801 126 -----E---L---------GLLLKLARALERRALRRADRIIAVSEATREEL------RELGGVPPEKITVIPNGVDTERF 182 (374)
T ss_pred -----c---h---------hHHHHHHHHHHHHHHHhCCEEEEecHHHHHHH------HhcCCCCCCcEEEecCccccccc
Confidence 0 0 00000011112223455677777776655532 333322 45555543322110
Q ss_pred CCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCC---CEEEEEcCCCCCCCcccCCCchhH
Q 012151 261 SSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRM---PFLWVVRPGLVSGAEWVEPLPKGF 337 (470)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~---~~i~~~~~~~~~~~~~~~~~p~~~ 337 (470)
...+.. ...-.. ...+..+++.+|+.. ....+..+++++..... .+-+.+-++. .....+
T Consensus 183 ---~~~~~~---~~~~~~-~~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~--------~~~~~~ 245 (374)
T cd03801 183 ---RPAPRA---ARRRLG-IPEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIVGDG--------PLREEL 245 (374)
T ss_pred ---CccchH---HHhhcC-CcCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEEeCc--------HHHHHH
Confidence 000000 001111 123345667778775 33345555666654321 2322222211 011222
Q ss_pred HH-----HhcCCceeeeccChHh---hhccCCcceeec----ccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhh
Q 012151 338 LE-----MLDGRGCIVKWAPQQE---VLAHPAVGGFWT----HSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWR 405 (470)
Q Consensus 338 ~~-----~~~~~~~~~~~~p~~~---lL~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G 405 (470)
.+ ..++++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+. ...+..+.+. +
T Consensus 246 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~ 318 (374)
T cd03801 246 EALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-E 318 (374)
T ss_pred HHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-c
Confidence 11 1346788889997555 6777777 773 3557799999999999998555 5567777764 8
Q ss_pred eeEEcCCcccHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 406 VGLHSEWKLERMEIERAIRRVMVEAEGQEMR-ARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 406 ~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~-~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
.|...+. .+.+++.++|.+++++ +... +..+...+.+.+. -+..+..+++++.+
T Consensus 319 ~g~~~~~-~~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 373 (374)
T cd03801 319 TGLLVPP-GDPEALAEAILRLLDD---PELRRRLGEAARERVAER----FSWDRVAARTEEVY 373 (374)
T ss_pred ceEEeCC-CCHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHhh
Confidence 8888877 5689999999999998 4433 3333333334443 55555556655543
No 51
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.18 E-value=5.7e-08 Score=96.05 Aligned_cols=113 Identities=13% Similarity=0.076 Sum_probs=75.1
Q ss_pred CCceeeeccCh-HhhhccCCcceeecc----cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHH
Q 012151 343 GRGCIVKWAPQ-QEVLAHPAVGGFWTH----SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERM 417 (470)
Q Consensus 343 ~~~~~~~~~p~-~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 417 (470)
+++.+.++.+. ..++..+++ +|.- |...++.||+++|+|+|+. |....+..+++. ..|...+. -+.+
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s----~~~~~~e~i~~~-~~G~~~~~-~~~~ 324 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVAS----NAGGIPEVVKHG-ETGFLVDV-GDVE 324 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEe----CCCCchhhhcCC-CceEEcCC-CCHH
Confidence 56777777764 347877777 6632 3356999999999999994 444566777773 67877766 5789
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 418 EIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 418 ~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
++++++.+++++ +..+++.. +..++.+.+.-+....++++++.+++
T Consensus 325 ~l~~~i~~l~~~---~~~~~~~~---~~~~~~~~~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 325 AMAEYALSLLED---DELWQEFS---RAARNRAAERFDSERIVPQYEALYRR 370 (371)
T ss_pred HHHHHHHHHHhC---HHHHHHHH---HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999998 44333322 22222212225566677777776654
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.17 E-value=3.1e-08 Score=98.89 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=62.3
Q ss_pred CCceeeeccChHh---hhccCCcceeeccc----CchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCccc
Q 012151 343 GRGCIVKWAPQQE---VLAHPAVGGFWTHS----GWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLE 415 (470)
Q Consensus 343 ~~~~~~~~~p~~~---lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 415 (470)
+++.+.+++|+.+ ++..+++ +++.+ -..++.||+++|+|+|+... ......+++ -+.|...+. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~-~~~g~~~~~-~~ 354 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVD-GVTGLLVDP-RD 354 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccC-CCCeEEeCC-CC
Confidence 5678889999876 5777777 77542 24689999999999998654 345666777 378988877 57
Q ss_pred HHHHHHHHHHHhcc
Q 012151 416 RMEIERAIRRVMVE 429 (470)
Q Consensus 416 ~~~l~~ai~~vl~~ 429 (470)
.++++++|.+++++
T Consensus 355 ~~~l~~~i~~l~~~ 368 (398)
T cd03800 355 PEALAAALRRLLTD 368 (398)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999998
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.17 E-value=1.5e-07 Score=92.38 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=60.9
Q ss_pred cCCceeeeccChHh---hhccCCcceeecc----cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcc
Q 012151 342 DGRGCIVKWAPQQE---VLAHPAVGGFWTH----SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKL 414 (470)
Q Consensus 342 ~~~~~~~~~~p~~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 414 (470)
.+++.+.+++|+.+ ++..+++ +|.. |...++.||+++|+|+|+.. ....+..+.+. +.|..++. -
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~-~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPP-G 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCC-C
Confidence 36778889998766 6777887 7743 33578999999999999854 44566777774 88888877 2
Q ss_pred cHHHHHHHHHHHhcc
Q 012151 415 ERMEIERAIRRVMVE 429 (470)
Q Consensus 415 ~~~~l~~ai~~vl~~ 429 (470)
+. ++.+++.+++++
T Consensus 330 ~~-~~~~~i~~l~~~ 343 (374)
T cd03817 330 DE-ALAEALLRLLQD 343 (374)
T ss_pred CH-HHHHHHHHHHhC
Confidence 22 899999999998
No 54
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.15 E-value=3.6e-08 Score=97.30 Aligned_cols=131 Identities=18% Similarity=0.118 Sum_probs=79.5
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHh---
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANS----RMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQE--- 355 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~----~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~--- 355 (470)
++.+++..|+... .+....+++++..+ +.++++ ++.+.. ...+.+.+.....+++.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~--~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~~-----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 290 (394)
T cd03794 219 DKFVVLYAGNIGR--AQGLDTLLEAAALLKDRPDIRFLI-VGDGPE-----KEELKELAKALGLDNVTFLGRVPKEELPE 290 (394)
T ss_pred CcEEEEEecCccc--ccCHHHHHHHHHHHhhcCCeEEEE-eCCccc-----HHHHHHHHHHcCCCcEEEeCCCChHHHHH
Confidence 4567777788754 33344445554443 334333 332210 00011111122236788889998665
Q ss_pred hhccCCcceeecccC---------chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHH
Q 012151 356 VLAHPAVGGFWTHSG---------WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRV 426 (470)
Q Consensus 356 lL~~~~~~~~I~HGG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~v 426 (470)
++..+++ +|.... .+++.||+++|+|+|+.+....+ ..+.. .+.|...+. -+.++++++|.++
T Consensus 291 ~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~----~~~~~-~~~g~~~~~-~~~~~l~~~i~~~ 362 (394)
T cd03794 291 LLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA----ELVEE-AGAGLVVPP-GDPEALAAAILEL 362 (394)
T ss_pred HHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch----hhhcc-CCcceEeCC-CCHHHHHHHHHHH
Confidence 6777777 664332 23479999999999997766543 34444 367777766 4789999999999
Q ss_pred hcc
Q 012151 427 MVE 429 (470)
Q Consensus 427 l~~ 429 (470)
++|
T Consensus 363 ~~~ 365 (394)
T cd03794 363 LDD 365 (394)
T ss_pred HhC
Confidence 987
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.15 E-value=3.7e-07 Score=91.82 Aligned_cols=164 Identities=12% Similarity=0.081 Sum_probs=92.6
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhCC--CCEEE-EEcCCCCCCCcccCCCchhHHHH----hcCCceeeeccChHh
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANSR--MPFLW-VVRPGLVSGAEWVEPLPKGFLEM----LDGRGCIVKWAPQQE 355 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~--~~~i~-~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~~~~~p~~~ 355 (470)
++.+++..|+.. ..+.+..+++|++.+. .++-+ .++.+. ..+.+.+. .-+|+.+.+++|+.+
T Consensus 228 ~~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~ivG~g~---------~~~~l~~~~~~~~l~~v~f~G~~~~~~ 296 (412)
T PRK10307 228 GKKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVICGQGG---------GKARLEKMAQCRGLPNVHFLPLQPYDR 296 (412)
T ss_pred CCEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEEECCCh---------hHHHHHHHHHHcCCCceEEeCCCCHHH
Confidence 345566678875 4445666777776542 12333 333221 22222211 114678889998765
Q ss_pred ---hhccCCcceeecccCc------hhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHH
Q 012151 356 ---VLAHPAVGGFWTHSGW------NSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRV 426 (470)
Q Consensus 356 ---lL~~~~~~~~I~HGG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~v 426 (470)
++..+++-.+.+..+. +.+.|++++|+|+|+....+.. ....+. +.|..++. -+.++|+++|.++
T Consensus 297 ~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~-~d~~~la~~i~~l 370 (412)
T PRK10307 297 LPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP-ESVEALVAAIAAL 370 (412)
T ss_pred HHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-CCHHHHHHHHHHH
Confidence 6778887444444332 2368999999999997654311 112222 56777766 5789999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 427 MVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 427 l~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
++| +..+ .+|++..++.+.+.-+....++.+++.+++
T Consensus 371 ~~~---~~~~---~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 371 ARQ---ALLR---PKLGTVAREYAERTLDKENVLRQFIADIRG 407 (412)
T ss_pred HhC---HHHH---HHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 987 3322 222222222222224455666666665554
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.15 E-value=2.6e-07 Score=89.98 Aligned_cols=313 Identities=16% Similarity=0.082 Sum_probs=161.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHh
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAING 96 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (470)
+|++++....|+...+..++++|.++||+|++++......... ...++.+..++.... . ......+....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~----~~~~~~~~~~~- 70 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEEL----EALGVKVIPIPLDRR-G----INPFKDLKALL- 70 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccc----ccCCceEEecccccc-c----cChHhHHHHHH-
Confidence 4777777777899999999999999999999999865544211 226777777763211 0 01111111111
Q ss_pred hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCcc--chHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCCCC
Q 012151 97 KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWF--FTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPV 174 (470)
Q Consensus 97 ~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~--~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 174 (470)
.+...+++ .+||+|++..... .+..++...+.|.+.......... . .
T Consensus 71 ----~~~~~~~~------------~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~-----------~ 119 (359)
T cd03808 71 ----RLYRLLRK------------ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV----F-----------T 119 (359)
T ss_pred ----HHHHHHHh------------cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh----h-----------c
Confidence 11222222 3899998875432 234445545666555432211000 0 0
Q ss_pred CCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCC---CCeeee
Q 012151 175 QDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLS---IPIFPI 251 (470)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~---~~v~~v 251 (470)
. . .. ......... ......++.++..+....+.- ..... .....+
T Consensus 120 -~---------~--~~------------~~~~~~~~~--~~~~~~~d~ii~~s~~~~~~~------~~~~~~~~~~~~~~ 167 (359)
T cd03808 120 -S---------G--GL------------KRRLYLLLE--RLALRFTDKVIFQNEDDRDLA------LKLGIIKKKKTVLI 167 (359)
T ss_pred -c---------c--hh------------HHHHHHHHH--HHHHhhccEEEEcCHHHHHHH------HHhcCCCcCceEEe
Confidence 0 0 00 001111111 111234567777776554432 22111 122233
Q ss_pred ccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhC---CCCE-EEEEcCCCCCCC
Q 012151 252 GPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANS---RMPF-LWVVRPGLVSGA 327 (470)
Q Consensus 252 Gpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~-i~~~~~~~~~~~ 327 (470)
.+...+... .... . .. ...++.+++..|+... .+....++++++.+ +.++ ++.++......
T Consensus 168 ~~~~~~~~~-----~~~~---~-~~---~~~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~- 232 (359)
T cd03808 168 PGSGVDLDR-----FSPS---P-EP---IPEDDPVFLFVARLLK--DKGIDELLEAARILKAKGPNVRLLLVGDGDEEN- 232 (359)
T ss_pred cCCCCChhh-----cCcc---c-cc---cCCCCcEEEEEecccc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcch-
Confidence 232222100 0001 0 00 1234567777888753 23344445555443 2333 22333321110
Q ss_pred cccCCCchhHHHH--hcCCceeeeccC-hHhhhccCCcceeecccC----chhhHHhhhcCCceecCCCccchhhhHHHH
Q 012151 328 EWVEPLPKGFLEM--LDGRGCIVKWAP-QQEVLAHPAVGGFWTHSG----WNSTLESMCEGVPMICQPYLPDQMVNARYV 400 (470)
Q Consensus 328 ~~~~~~p~~~~~~--~~~~~~~~~~~p-~~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv 400 (470)
........+ ..+++.+.++.. ...++..+++ +|..+. .+++.||+++|+|+|+.+. ..+...+
T Consensus 233 ----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~----~~~~~~i 302 (359)
T cd03808 233 ----PAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDV----PGCREAV 302 (359)
T ss_pred ----hhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecC----CCchhhh
Confidence 000000111 125567777644 3448888887 775543 6789999999999999544 3455667
Q ss_pred HhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 401 SHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 401 ~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
++. +.|...+. -+.+++.++|.++++|
T Consensus 303 ~~~-~~g~~~~~-~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 303 IDG-VNGFLVPP-GDAEALADAIERLIED 329 (359)
T ss_pred hcC-cceEEECC-CCHHHHHHHHHHHHhC
Confidence 763 78888776 5789999999999988
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.13 E-value=3.4e-08 Score=99.29 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=62.6
Q ss_pred CCceee-eccChHh---hhccCCcceeec-c------cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcC
Q 012151 343 GRGCIV-KWAPQQE---VLAHPAVGGFWT-H------SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSE 411 (470)
Q Consensus 343 ~~~~~~-~~~p~~~---lL~~~~~~~~I~-H------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 411 (470)
+++.+. +|+|..+ +|..+++ +|. + |--+++.||+++|+|+|+.. .......+++. +.|..++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~----~~~~~eiv~~~-~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALD----FKCIDELVKHG-ENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeC----CCCHHHHhcCC-CCEEEEC
Confidence 445544 6888666 5777888 663 1 12447999999999999944 34566777774 7898873
Q ss_pred CcccHHHHHHHHHHHhcc---ch-hHHHHHHHHHHH
Q 012151 412 WKLERMEIERAIRRVMVE---AE-GQEMRARIMHLK 443 (470)
Q Consensus 412 ~~~~~~~l~~ai~~vl~~---~~-~~~~~~~a~~l~ 443 (470)
+.++|+++|.++++| .+ -..+++++++..
T Consensus 367 ---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 ---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred ---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 789999999999987 22 234444444433
No 58
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.09 E-value=4.9e-07 Score=88.48 Aligned_cols=161 Identities=18% Similarity=0.140 Sum_probs=96.7
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCcccCCCchhHHHH-----hcCCceeeeccChH
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSGAEWVEPLPKGFLEM-----LDGRGCIVKWAPQQ 354 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~~~~~p~~ 354 (470)
+..+++..|+... .+....++++++.. +..+.+.+.+... ..+.+.+. ..+++.+.+++++.
T Consensus 201 ~~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~ 270 (377)
T cd03798 201 DKKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGDGP--------LREALEALAAELGLEDRVTFLGAVPHE 270 (377)
T ss_pred CceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCc--------chHHHHHHHHhcCCcceEEEeCCCCHH
Confidence 3466677787754 33344455555443 2244444433210 11112111 23677888999876
Q ss_pred h---hhccCCcceeec----ccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHh
Q 012151 355 E---VLAHPAVGGFWT----HSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVM 427 (470)
Q Consensus 355 ~---lL~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl 427 (470)
+ ++..+++ +|. -|..+++.||+++|+|+|+-+. ......+.+ .+.|...+. -+.+++.++|.+++
T Consensus 271 ~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~-~~~g~~~~~-~~~~~l~~~i~~~~ 342 (377)
T cd03798 271 EVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITD-GENGLLVPP-GDPEALAEAILRLL 342 (377)
T ss_pred HHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcC-CcceeEECC-CCHHHHHHHHHHHh
Confidence 4 6767777 663 3556789999999999998554 345566777 377887776 68899999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 428 VEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 428 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
++ +.. +..++..+.+.+. -+.....+++.+.+++
T Consensus 343 ~~---~~~-~~~~~~~~~~~~~----~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 343 AD---PWL-RLGRAARRRVAER----FSWENVAERLLELYRE 376 (377)
T ss_pred cC---cHH-HHhHHHHHHHHHH----hhHHHHHHHHHHHHhh
Confidence 98 442 2222233333332 3344556666666554
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.05 E-value=7.2e-07 Score=87.75 Aligned_cols=114 Identities=14% Similarity=0.076 Sum_probs=75.3
Q ss_pred cCCceeeeccC-hH---hhhccCCcceeeccc----CchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCc
Q 012151 342 DGRGCIVKWAP-QQ---EVLAHPAVGGFWTHS----GWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWK 413 (470)
Q Consensus 342 ~~~~~~~~~~p-~~---~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 413 (470)
.+++.+.+|++ +. .++..+++ +|.-. ..+++.||+++|+|+|+... ......+.+. +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC-
Confidence 45667789988 43 36877777 77753 35799999999999998543 3334455552 57777766
Q ss_pred ccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 414 LERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 414 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
.+.+++++++.+++++ +...+ ++++..++.+.+.-+..+.++++++.+++
T Consensus 315 ~~~~~~~~~l~~l~~~---~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 315 GDPEDLAEGIEWLLAD---PDERE---ELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred CCHHHHHHHHHHHHhC---HHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 5789999999999998 44222 22222222222225566777777776654
No 60
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.04 E-value=1.9e-07 Score=94.33 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=54.8
Q ss_pred HhhhccCCcceeecc-----cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhc
Q 012151 354 QEVLAHPAVGGFWTH-----SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMV 428 (470)
Q Consensus 354 ~~lL~~~~~~~~I~H-----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~ 428 (470)
..+++.+++ ++.. ||..++.||+++|+|+|+-|...++.+....+.+. |+++.. -++++|+++|.++++
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~---~d~~~La~~l~~ll~ 387 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV---EDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE---CCHHHHHHHHHHHhc
Confidence 347777776 4432 34446999999999999999988888888887774 776653 367999999999999
Q ss_pred c
Q 012151 429 E 429 (470)
Q Consensus 429 ~ 429 (470)
|
T Consensus 388 ~ 388 (425)
T PRK05749 388 D 388 (425)
T ss_pred C
Confidence 8
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.01 E-value=6.8e-07 Score=86.60 Aligned_cols=94 Identities=20% Similarity=0.200 Sum_probs=63.3
Q ss_pred CCceeeeccC-hHhhhccCCcceeecccC----chhhHHhhhcCCceecCCCccchhhhHHHHHhhhh-eeEEcCCcccH
Q 012151 343 GRGCIVKWAP-QQEVLAHPAVGGFWTHSG----WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWR-VGLHSEWKLER 416 (470)
Q Consensus 343 ~~~~~~~~~p-~~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~ 416 (470)
+++.+.++.. ...++..+++ +|.-+. .+++.||+++|+|+|+.+....+ ..+... | .|...+. .+.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~-~~~ 306 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN-GDV 306 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC-CCH
Confidence 3455556522 3448877777 776542 57899999999999986554433 233343 5 8888776 578
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 012151 417 MEIERAIRRVMVEAEGQEMRARIMHLKEKVD 447 (470)
Q Consensus 417 ~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 447 (470)
++++++|.++++| ++.+++..+-+..+.
T Consensus 307 ~~~~~~i~~ll~~---~~~~~~~~~~~~~~~ 334 (348)
T cd03820 307 EALAEALLRLMED---EELRKRMGANARESA 334 (348)
T ss_pred HHHHHHHHHHHcC---HHHHHHHHHHHHHHH
Confidence 9999999999998 665554444333333
No 62
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.99 E-value=5.1e-07 Score=90.55 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=60.8
Q ss_pred CCceeeeccChHh---hhccCCcceeec---ccC-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCccc
Q 012151 343 GRGCIVKWAPQQE---VLAHPAVGGFWT---HSG-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLE 415 (470)
Q Consensus 343 ~~~~~~~~~p~~~---lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 415 (470)
+++.+.+++|..+ +|..+++ +|. +.| ..++.||+++|+|+|+... ......+.+. +.|..++. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d 354 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG-HD 354 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC-CC
Confidence 5688889998654 6878887 663 223 4589999999999999554 3455566673 78888776 57
Q ss_pred HHHHHHHHHHHhcc
Q 012151 416 RMEIERAIRRVMVE 429 (470)
Q Consensus 416 ~~~l~~ai~~vl~~ 429 (470)
.++++++|.+++++
T Consensus 355 ~~~la~~i~~~l~~ 368 (405)
T TIGR03449 355 PADWADALARLLDD 368 (405)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999998
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.98 E-value=1.4e-06 Score=85.43 Aligned_cols=128 Identities=22% Similarity=0.196 Sum_probs=83.3
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCcccCCCchhHHH-----HhcCCceeeeccChHh--
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANSR-MPFLWVVRPGLVSGAEWVEPLPKGFLE-----MLDGRGCIVKWAPQQE-- 355 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~~-~~~i~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~~~~p~~~-- 355 (470)
..+++..|+.. ..+....+++|++... .++++.-.+. ....+.+ ...+|+.+.+|+|+.+
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~----------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP----------LEAELEALAAALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh----------hHHHHHHHHHhcCCcceEEEcCCCCHHHHH
Confidence 45667778775 3345667888888876 4444332211 1122221 2236788999999754
Q ss_pred -hhccCCcceeec---ccCc-hhhHHhhhcCCceecCCCccchhhhHHHHH-hhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 356 -VLAHPAVGGFWT---HSGW-NSTLESMCEGVPMICQPYLPDQMVNARYVS-HFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 356 -lL~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~-~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
++..+++-++.+ +.|. .++.||+++|+|+|+........ .+. +. +.|...+. -+.++++++|.++++|
T Consensus 259 ~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~-~~g~~~~~-~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 259 ALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHG-VTGLVVPP-GDPAALAEAIRRLLED 332 (357)
T ss_pred HHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCC-CceEEeCC-CCHHHHHHHHHHHHHC
Confidence 776778732223 2343 47999999999999965554443 333 33 77877766 5789999999999998
No 64
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.98 E-value=1.5e-06 Score=88.15 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=95.3
Q ss_pred EEEEEcCcccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCcccCCCch-------hH---HHH--hcCCcee
Q 012151 285 VVYISFGSVIAINKDGFLEIAWGVANS-----RMPFLWVVRPGLVSGAEWVEPLPK-------GF---LEM--LDGRGCI 347 (470)
Q Consensus 285 ~I~vs~Gs~~~~~~~~~~~i~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~p~-------~~---~~~--~~~~~~~ 347 (470)
.++++.|... +.+.+..+++|++.. ..+++++++.+... ..+.. .+ .++ ..+++.+
T Consensus 249 ~~i~~vGrl~--~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~-----~~l~~~~~~~~~~~~~~~~~~~l~~~V~f 321 (439)
T TIGR02472 249 PPILAISRPD--RRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDI-----RKMESQQREVLQKVLLLIDRYDLYGKVAY 321 (439)
T ss_pred cEEEEEcCCc--ccCCHHHHHHHHHhChhhhhhccEEEEeCCcccc-----ccccHHHHHHHHHHHHHHHHcCCCceEEe
Confidence 4556668775 445577778887642 13344444432110 11111 11 111 2356677
Q ss_pred eeccChHhh---hccC--Ccceeeccc---C-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHH
Q 012151 348 VKWAPQQEV---LAHP--AVGGFWTHS---G-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERME 418 (470)
Q Consensus 348 ~~~~p~~~l---L~~~--~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 418 (470)
.+++++.++ +..+ ++++||..+ | ..++.||+++|+|+|+... ..+...+.+. ..|..++. -++++
T Consensus 322 ~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv~~-~d~~~ 395 (439)
T TIGR02472 322 PKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLVDV-LDLEA 395 (439)
T ss_pred cCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEeCC-CCHHH
Confidence 777776664 5544 123387654 3 4599999999999999544 4455666663 67888776 57899
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 419 IERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 419 l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
|+++|.++++| +..+ ++|++..++.+.+.-+-...++++++.|
T Consensus 396 la~~i~~ll~~---~~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 396 IASALEDALSD---SSQW---QLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999998 5433 3344443333322244455555555443
No 65
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.97 E-value=1.7e-08 Score=99.64 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=97.2
Q ss_pred CCeEEEEEcCccccc-CHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCcccCCCchhHHHHh--cCCceeeeccChH---
Q 012151 282 PKSVVYISFGSVIAI-NKDGFLEIAWGVANSRM-PFLWVVRPGLVSGAEWVEPLPKGFLEML--DGRGCIVKWAPQQ--- 354 (470)
Q Consensus 282 ~~~~I~vs~Gs~~~~-~~~~~~~i~~al~~~~~-~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~p~~--- 354 (470)
+++.|++++|..... ..+.+..+++|++.... ++.++...+.. . ...+.+...+.. .+++.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~-~---~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR-T---RPRIREAGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC-h---HHHHHHHHHhhccCCCCEEEECCcCHHHHH
Confidence 456788888876542 45667888888887643 24444433210 0 001111111111 3567777665544
Q ss_pred hhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHH
Q 012151 355 EVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQE 434 (470)
Q Consensus 355 ~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~ 434 (470)
.++..+++ ||+.+| |.+.||+++|+|+|+++...+ +..+.+. |++..+.. +.++|.++|.+++++ +.
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~-g~~~~~~~--~~~~i~~~i~~ll~~---~~ 339 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVES-GTNVLVGT--DPEAILAAIEKLLSD---EF 339 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhhe-eeEEecCC--CHHHHHHHHHHHhcC---ch
Confidence 46767787 999999 888899999999999874322 3345553 77766643 589999999999998 44
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 435 MRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 435 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
.+++ ++ ... .+...+.++|++.|
T Consensus 340 ~~~~---~~---~~~----~~~~~a~~~I~~~l 362 (363)
T cd03786 340 AYSL---MS---INP----YGDGNASERIVEIL 362 (363)
T ss_pred hhhc---CC---CCC----CCCCHHHHHHHHHh
Confidence 4332 22 222 34446666666654
No 66
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.96 E-value=3.1e-07 Score=88.01 Aligned_cols=289 Identities=14% Similarity=0.048 Sum_probs=152.1
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCCC--CcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHhhcchHHHH
Q 012151 27 GHINPMLHLASILYSKGFSVTIIHTDFN--FSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAINGKCIMPFRD 104 (470)
Q Consensus 27 GH~~p~l~La~~L~~rGh~V~~~~~~~~--~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (470)
-|+.-+..+.++|.++||+|.+.+-+.. .+... ..|+.+..+...- . +........... ...+..
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~-----~yg~~y~~iG~~g-~------~~~~Kl~~~~~R-~~~l~~ 77 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLD-----LYGIDYIVIGKHG-D------SLYGKLLESIER-QYKLLK 77 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHH-----HcCCCeEEEcCCC-C------CHHHHHHHHHHH-HHHHHH
Confidence 4999999999999999999999887532 22333 3789999987321 1 222222221111 112222
Q ss_pred HHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCCCCCCCCCCcccC
Q 012151 105 CLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPVQDHQSLETPV 184 (470)
Q Consensus 105 ~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i 184 (470)
++++ .+||++|+- ....+..+|..+|+|+|.+.-+...... +....|..
T Consensus 78 ~~~~------------~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~---------~~Lt~Pla--------- 126 (335)
T PF04007_consen 78 LIKK------------FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQ---------NRLTLPLA--------- 126 (335)
T ss_pred HHHh------------hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcc---------ceeehhcC---------
Confidence 2333 489999976 4678888999999999998654211110 01111111
Q ss_pred CCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCC--Cee-eeccCCCCCCCC
Q 012151 185 TEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSI--PIF-PIGPLHKCSPAS 261 (470)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~--~v~-~vGpl~~~~~~~ 261 (470)
+.++.+....-+. ...++. ++. |=| +..-.-
T Consensus 127 ------------------------------------~~i~~P~~~~~~~-------~~~~G~~~~i~~y~G-~~E~ay-- 160 (335)
T PF04007_consen 127 ------------------------------------DVIITPEAIPKEF-------LKRFGAKNQIRTYNG-YKELAY-- 160 (335)
T ss_pred ------------------------------------CeeECCcccCHHH-------HHhcCCcCCEEEECC-eeeEEe--
Confidence 1111111100000 000111 122 111 100000
Q ss_pred CCCCCccchhhhhhhcCCCCCCeEEEEEcCcccc----cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhH
Q 012151 262 SGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIA----INKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGF 337 (470)
Q Consensus 262 ~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~----~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~ 337 (470)
-.+..++ ++..+-+. ..+++.|++-+-+..+ .....+..+++.+++.+..+++...... .++ +
T Consensus 161 -l~~F~Pd-~~vl~~lg-~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~---------~~~-~ 227 (335)
T PF04007_consen 161 -LHPFKPD-PEVLKELG-LDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED---------QRE-L 227 (335)
T ss_pred -ecCCCCC-hhHHHHcC-CCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc---------hhh-H
Confidence 0001122 22334444 2345677777666433 2334566789999988776444332211 111 1
Q ss_pred HHHhcCCceee-eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccH
Q 012151 338 LEMLDGRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLER 416 (470)
Q Consensus 338 ~~~~~~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 416 (470)
.++. ++.+. +-++..++|.++++ +|+-|| ....||...|+|.|.+ +.++-...-+.+.+. |. ... ..+.
T Consensus 228 ~~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~~-~~~~ 297 (335)
T PF04007_consen 228 FEKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LYH-STDP 297 (335)
T ss_pred Hhcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eEe-cCCH
Confidence 1111 12333 55666689999998 999888 7889999999999985 333322333556663 65 222 2466
Q ss_pred HHHHHHHHHHhc
Q 012151 417 MEIERAIRRVMV 428 (470)
Q Consensus 417 ~~l~~ai~~vl~ 428 (470)
+++.+.+++.+.
T Consensus 298 ~ei~~~v~~~~~ 309 (335)
T PF04007_consen 298 DEIVEYVRKNLG 309 (335)
T ss_pred HHHHHHHHHhhh
Confidence 777776655444
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.95 E-value=4.7e-06 Score=81.65 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=57.1
Q ss_pred cCCceeeeccChHh---hhccCCcceeeccc----CchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcc
Q 012151 342 DGRGCIVKWAPQQE---VLAHPAVGGFWTHS----GWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKL 414 (470)
Q Consensus 342 ~~~~~~~~~~p~~~---lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 414 (470)
.+++.+.+|+++.+ ++..+++ +|.-. -..++.||+++|+|+|+.+. ......+.. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc--CceEEeCC--
Confidence 36778889999655 5777777 65433 25689999999999999653 333444444 67766665
Q ss_pred cHHHHHHHHHHHhcc
Q 012151 415 ERMEIERAIRRVMVE 429 (470)
Q Consensus 415 ~~~~l~~ai~~vl~~ 429 (470)
+.+++.++|.+++++
T Consensus 331 ~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 DVDALAAALRRALEL 345 (375)
T ss_pred ChHHHHHHHHHHHhC
Confidence 449999999999998
No 68
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.93 E-value=2.4e-06 Score=85.21 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=59.3
Q ss_pred cCCceeeeccChHh---hhccCCcceeeccc---C-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcc
Q 012151 342 DGRGCIVKWAPQQE---VLAHPAVGGFWTHS---G-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKL 414 (470)
Q Consensus 342 ~~~~~~~~~~p~~~---lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 414 (470)
.+++.+.+++|..+ +|..+++ ++... | ..++.||+++|+|+|+.-. ......+... +.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeCC--
Confidence 46788999999764 6777787 66422 2 3578999999999999643 3344556663 67877654
Q ss_pred cHHHHHHHHHHHhcc
Q 012151 415 ERMEIERAIRRVMVE 429 (470)
Q Consensus 415 ~~~~l~~ai~~vl~~ 429 (470)
+.++++++|.+++++
T Consensus 350 ~~~~~a~~i~~l~~~ 364 (392)
T cd03805 350 TPEEFAEAMLKLAND 364 (392)
T ss_pred CHHHHHHHHHHHHhC
Confidence 789999999999998
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.90 E-value=3.8e-06 Score=84.08 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCceeeeccChHh---hhccCCcceeecc---cCch-hhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCccc
Q 012151 343 GRGCIVKWAPQQE---VLAHPAVGGFWTH---SGWN-STLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLE 415 (470)
Q Consensus 343 ~~~~~~~~~p~~~---lL~~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 415 (470)
+++.+.+|+|+.+ +|+.+++ +|.- -|.| ++.||+++|+|+|+.+..+ ....+.+ |.+.... .+
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--~~ 319 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--PD 319 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC--CC
Confidence 5678889998655 7777777 6643 2443 9999999999999966542 3344444 4443333 37
Q ss_pred HHHHHHHHHHHhcc
Q 012151 416 RMEIERAIRRVMVE 429 (470)
Q Consensus 416 ~~~l~~ai~~vl~~ 429 (470)
.+++++++.+++++
T Consensus 320 ~~~l~~~l~~~l~~ 333 (398)
T cd03796 320 VESIVRKLEEAISI 333 (398)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999986
No 70
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.88 E-value=2.8e-07 Score=89.06 Aligned_cols=157 Identities=15% Similarity=0.066 Sum_probs=98.6
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCCcccCCCchhHHHHhcC--CceeeeccChHhhhccC
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANSRMP-FLWVVRPGLVSGAEWVEPLPKGFLEMLDG--RGCIVKWAPQQEVLAHP 360 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~-~i~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~p~~~lL~~~ 360 (470)
++|.+--||-...-...+..++++...+..+ ..+.+.... + . +.+.+...+ ...+.+ .-.+++..+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~--~------~-~~i~~~~~~~~~~~~~~--~~~~~m~~a 236 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF--K------G-KDLKEIYGDISEFEISY--DTHKALLEA 236 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC--c------H-HHHHHHHhcCCCcEEec--cHHHHHHhh
Confidence 6888989998763334555556666655322 222322110 0 1 222222221 222222 335688888
Q ss_pred CcceeecccCchhhHHhhhcCCceecCCCc--cchhhhHHHHH---hhhheeEEc-------------CC-cccHHHHHH
Q 012151 361 AVGGFWTHSGWNSTLESMCEGVPMICQPYL--PDQMVNARYVS---HFWRVGLHS-------------EW-KLERMEIER 421 (470)
Q Consensus 361 ~~~~~I~HGG~gs~~eal~~GvP~v~~P~~--~DQ~~na~rv~---~~~G~G~~l-------------~~-~~~~~~l~~ 421 (470)
++ .|+-+|..|+ |+..+|+|||+ ++. .-|+.||+++. . .|+.-.+ -. +.|++.|++
T Consensus 237 Dl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~ 311 (347)
T PRK14089 237 EF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLK 311 (347)
T ss_pred hH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHH
Confidence 88 9999999999 99999999999 543 46999999998 5 3655444 22 689999999
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012151 422 AIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLID 465 (470)
Q Consensus 422 ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
++.+ ... +.+++...++++.+.. +++.++++.+.|
T Consensus 312 ~i~~-~~~---~~~~~~~~~l~~~l~~-----~a~~~~A~~i~~ 346 (347)
T PRK14089 312 AYKE-MDR---EKFFKKSKELREYLKH-----GSAKNVAKILKE 346 (347)
T ss_pred HHHH-HHH---HHHHHHHHHHHHHhcC-----CHHHHHHHHHhc
Confidence 9988 222 4566666666665532 667776665544
No 71
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.88 E-value=2.6e-07 Score=91.41 Aligned_cols=136 Identities=11% Similarity=0.129 Sum_probs=84.3
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCcccCCCchhHHHHh--cCCceeeeccChH-
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANS-----RMPFLWVVRPGLVSGAEWVEPLPKGFLEML--DGRGCIVKWAPQQ- 354 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~p~~- 354 (470)
+.+|+++.+-.... .+.+..+++|+..+ +.++++...++. .....+.+.. .+++.+.+.+++.
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP--------VVREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh--------HHHHHHHHHhCCCCCEEEECCCChHH
Confidence 35676665433211 23467777777664 345555433221 0111122222 2567777766654
Q ss_pred --hhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchh
Q 012151 355 --EVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEG 432 (470)
Q Consensus 355 --~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~ 432 (470)
.++..+++ +|+.+|.. +.||+++|+|+|.++...+++. +... |.+..+. .++++|.+++.++++|
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~--~d~~~i~~ai~~ll~~--- 334 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG--TDKENITKAAKRLLTD--- 334 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC--CCHHHHHHHHHHHHhC---
Confidence 46667776 99987744 7999999999999976555553 3343 7776654 4789999999999998
Q ss_pred HHHHHHHH
Q 012151 433 QEMRARIM 440 (470)
Q Consensus 433 ~~~~~~a~ 440 (470)
+..+++..
T Consensus 335 ~~~~~~~~ 342 (365)
T TIGR00236 335 PDEYKKMS 342 (365)
T ss_pred hHHHHHhh
Confidence 66655443
No 72
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.84 E-value=8.7e-06 Score=87.98 Aligned_cols=374 Identities=11% Similarity=0.088 Sum_probs=184.8
Q ss_pred CCCEEEEEcCCCc---------------cChHHHHHHHHHHHhCC--CeEEEEeCCCCCccc--------cccc------
Q 012151 14 NGRRVILFPLPFQ---------------GHINPMLHLASILYSKG--FSVTIIHTDFNFSST--------NYFS------ 62 (470)
Q Consensus 14 ~~~~il~~~~~~~---------------GH~~p~l~La~~L~~rG--h~V~~~~~~~~~~~~--------~~~~------ 62 (470)
+++.|++++.-+. |+..=.+.||++|+++| |+|.++|-....+.+ +.+.
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 5788888764332 35555799999999998 899999975332211 0000
Q ss_pred -----CCCCCeeEEecCCCCCCCcccccCHHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCc--cch
Q 012151 63 -----CNYPHFDFHSFPDGFSETEASVEDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFW--FFT 135 (470)
Q Consensus 63 -----~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~--~~~ 135 (470)
....|+..+.+|-+-.........++.++..+...+...+..+-+.+.++.+. ..+..||+|-+.... ..+
T Consensus 248 ~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~--~~~~~pDvIHaHyw~sG~aa 325 (1050)
T TIGR02468 248 DGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGS--GHPVWPYVIHGHYADAGDSA 325 (1050)
T ss_pred ccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc--ccCCCCCEEEECcchHHHHH
Confidence 02247888887744222223334455555555544443333211111111000 001259999888433 456
Q ss_pred HHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCCCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHh
Q 012151 136 HTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDT 215 (470)
Q Consensus 136 ~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (470)
..+++.+|||+|.-..+.......... ..+..+ ...+... -.+...+..-..
T Consensus 326 ~~L~~~lgVP~V~T~HSLgr~K~~~ll-----~~g~~~-------~~~~~~~----------------y~~~~Ri~~Ee~ 377 (1050)
T TIGR02468 326 ALLSGALNVPMVLTGHSLGRDKLEQLL-----KQGRMS-------KEEINST----------------YKIMRRIEAEEL 377 (1050)
T ss_pred HHHHHhhCCCEEEECccchhhhhhhhc-----cccccc-------ccccccc----------------cchHHHHHHHHH
Confidence 788899999988744331100000000 000000 0000000 000111111122
Q ss_pred hhccccEEEEcChHHhhHHHHHH--Hhhcc------------------CCCCeeeeccCCCC------CCCC--------
Q 012151 216 QIMASSGVIWNSYRDLEQAGLGL--AHQKY------------------LSIPIFPIGPLHKC------SPAS-------- 261 (470)
Q Consensus 216 ~~~~~~~~l~~s~~~le~p~~~~--~~~~~------------------~~~~v~~vGpl~~~------~~~~-------- 261 (470)
.+..++.++.+|..+.+.-+--+ + .+. ..+++..|.|=... ....
T Consensus 378 ~l~~Ad~VIasT~qE~~eq~~lY~~~-~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~ 456 (1050)
T TIGR02468 378 SLDASEIVITSTRQEIEEQWGLYDGF-DVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNE 456 (1050)
T ss_pred HHHhcCEEEEeCHHHHHHHHHHhccC-CchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccc
Confidence 35678888888888776321000 0 100 01233333221110 0000
Q ss_pred --CCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCC-----CCEEEEEcCCCCCCCccc---C
Q 012151 262 --SGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSR-----MPFLWVVRPGLVSGAEWV---E 331 (470)
Q Consensus 262 --~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~-----~~~i~~~~~~~~~~~~~~---~ 331 (470)
.....+.-+..+..|+. .++++ +++..|... +.+-+..+++|++.+. ..+.++++...... ... .
T Consensus 457 ~~~~~~~~~~~~~l~r~~~-~pdkp-vIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d-~l~~~~~ 531 (1050)
T TIGR02468 457 EHPAKPDPPIWSEIMRFFT-NPRKP-MILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDID-EMSSGSS 531 (1050)
T ss_pred cccccccchhhHHHHhhcc-cCCCc-EEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhh-hhhccch
Confidence 00011111134566665 23344 445567775 4455677788887652 23444454321100 000 0
Q ss_pred CCchhH---HHHh--cCCceeeeccChHh---hhccCC--cceeecc---cC-chhhHHhhhcCCceecCCCccchhhhH
Q 012151 332 PLPKGF---LEML--DGRGCIVKWAPQQE---VLAHPA--VGGFWTH---SG-WNSTLESMCEGVPMICQPYLPDQMVNA 397 (470)
Q Consensus 332 ~~p~~~---~~~~--~~~~~~~~~~p~~~---lL~~~~--~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na 397 (470)
..-..+ .++. .+++.+.+++++.+ ++..++ .++||.- =| ..++.||+++|+|+|+-... ...
T Consensus 532 ~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~ 607 (1050)
T TIGR02468 532 SVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPV 607 (1050)
T ss_pred HHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcH
Confidence 000111 1222 25667778888765 455442 1237765 23 35899999999999996543 344
Q ss_pred HHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 398 RYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 398 ~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
..++.. .-|+.++. -++++|+++|.++++|
T Consensus 608 EII~~g-~nGlLVdP-~D~eaLA~AL~~LL~D 637 (1050)
T TIGR02468 608 DIHRVL-DNGLLVDP-HDQQAIADALLKLVAD 637 (1050)
T ss_pred HHhccC-CcEEEECC-CCHHHHHHHHHHHhhC
Confidence 455553 67888877 6889999999999998
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.84 E-value=3.8e-06 Score=82.38 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCceee-eccChHh---hhccCCcceeecc------cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC
Q 012151 343 GRGCIV-KWAPQQE---VLAHPAVGGFWTH------SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW 412 (470)
Q Consensus 343 ~~~~~~-~~~p~~~---lL~~~~~~~~I~H------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 412 (470)
+++.+. .|+|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+.+... ...+... +.|...+.
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcC
Confidence 566777 4588654 7767777 6632 34568999999999999976544 3445563 77877776
Q ss_pred cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012151 413 KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDH 466 (470)
Q Consensus 413 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 466 (470)
-+.+++++++.+++++ ++.++ ++++..++..++ -+..+.++++.+.
T Consensus 319 -~d~~~~~~~l~~l~~~---~~~~~---~~~~~~~~~~~~-~s~~~~~~~~~~~ 364 (366)
T cd03822 319 -GDPAALAEAIRRLLAD---PELAQ---ALRARAREYARA-MSWERVAERYLRL 364 (366)
T ss_pred -CCHHHHHHHHHHHHcC---hHHHH---HHHHHHHHHHhh-CCHHHHHHHHHHH
Confidence 4689999999999998 43332 333333333222 4444555555544
No 74
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.84 E-value=3.1e-06 Score=82.94 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=56.3
Q ss_pred CCceeeeccC-hHhhhccCCcceeeccc----C-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccH
Q 012151 343 GRGCIVKWAP-QQEVLAHPAVGGFWTHS----G-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLER 416 (470)
Q Consensus 343 ~~~~~~~~~p-~~~lL~~~~~~~~I~HG----G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 416 (470)
+++.+.++.+ ...+|..+++ +|+-+ | .+++.||+++|+|+|+.. -......+.+. +.|..++. -+.
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i~~~-~~g~~~~~-~~~ 317 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETVRPG-ETGLLVPP-GDA 317 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHHhCC-CceEEeCC-CCH
Confidence 5678888854 3448888888 55322 3 459999999999999854 33455667673 68888876 688
Q ss_pred HHHHHHHHHHhc
Q 012151 417 MEIERAIRRVMV 428 (470)
Q Consensus 417 ~~l~~ai~~vl~ 428 (470)
++++++|..++.
T Consensus 318 ~~l~~~i~~~~~ 329 (355)
T cd03819 318 EALAQALDQILS 329 (355)
T ss_pred HHHHHHHHHHHh
Confidence 999999976654
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.78 E-value=2.8e-06 Score=82.55 Aligned_cols=126 Identities=12% Similarity=0.020 Sum_probs=79.3
Q ss_pred EEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHH--hcCCceeeeccChHh---hhccC
Q 012151 286 VYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEM--LDGRGCIVKWAPQQE---VLAHP 360 (470)
Q Consensus 286 I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~p~~~---lL~~~ 360 (470)
+.+..|... ..+....++++++..+.++++.-.+.. . ..+-....+. ..+++.+.+++++.+ +++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~-~-----~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD-P-----DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC-H-----HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 334457764 344556678888888777655432211 0 0011111112 257788899999764 67777
Q ss_pred Ccceeec----ccC-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 361 AVGGFWT----HSG-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 361 ~~~~~I~----HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
++ ++. +-| ..++.||+++|+|+|+... ..+...+.+. ..|...+. .+++++++.+++..
T Consensus 245 d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~~~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 245 RA--LLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLVDS---VEELAAAVARADRL 308 (335)
T ss_pred cE--EEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEeCC---HHHHHHHHHHHhcc
Confidence 77 553 234 3589999999999998544 3444555552 46776654 89999999998765
No 76
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.78 E-value=1.1e-05 Score=79.31 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=86.0
Q ss_pred EEEcCcccccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCcccCCCchhHH--HHhcCCceeeeccChHh---hhcc
Q 012151 287 YISFGSVIAINKDGFLEIAWGVANSR--MPFLWVVRPGLVSGAEWVEPLPKGFL--EMLDGRGCIVKWAPQQE---VLAH 359 (470)
Q Consensus 287 ~vs~Gs~~~~~~~~~~~i~~al~~~~--~~~i~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~p~~~---lL~~ 359 (470)
++..|+.. ..+.+..+++|++.+. .+++ .++..... ..+-+.+. ....+++.+.+++++.+ ++..
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~-ivG~~~~~-----~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLV-IVGNADHN-----TPYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEE-EEcCCCCc-----chHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 34568775 3445666778887764 3433 33332111 01112222 12236788889999875 4555
Q ss_pred CCcceeecccCc-----hhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHH
Q 012151 360 PAVGGFWTHSGW-----NSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQE 434 (470)
Q Consensus 360 ~~~~~~I~HGG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~ 434 (470)
+++ ++.++-. +++.||+++|+|+|+..... +...+... |.. .+. . +.++++|.+++++ +.
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~~--~~~--~-~~l~~~i~~l~~~---~~ 332 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AIY--FKV--G-DDLASLLEELEAD---PE 332 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-eeE--ecC--c-hHHHHHHHHHHhC---HH
Confidence 666 6554433 47999999999999865442 22223332 333 232 1 1299999999998 43
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 435 MRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 435 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
.. .++++..++.+.+.-+....++++++.+
T Consensus 333 ~~---~~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 333 EV---SAMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 32 3344444433333345566666666554
No 77
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.78 E-value=1.2e-05 Score=78.43 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=67.7
Q ss_pred CCceeeeccC-hHhhhccCCcceeecccC----chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHH
Q 012151 343 GRGCIVKWAP-QQEVLAHPAVGGFWTHSG----WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERM 417 (470)
Q Consensus 343 ~~~~~~~~~p-~~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 417 (470)
+++.+.+... ...++..+++ +|..+. .+++.||+++|+|+|+.. ...+...+.+ .|..++. -+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~-~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPP-GDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCC-CCHH
Confidence 4455555443 3458888887 776544 479999999999999844 4445555555 3444554 4689
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 418 EIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 418 ~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
++.++|.+++++ +.. .+++++..++.+.+.-+..+.++.+++.+
T Consensus 321 ~l~~~i~~l~~~---~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 321 ALAEAIEALLAD---PAL---RQALGEAARERIEENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHHhC---hHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999998 422 22233333333222255566666665543
No 78
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.77 E-value=3.2e-06 Score=83.40 Aligned_cols=131 Identities=14% Similarity=0.094 Sum_probs=80.9
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCcccCCCchhHHH-----HhcCCceeeeccCh--Hh
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANSRMPF-LWVVRPGLVSGAEWVEPLPKGFLE-----MLDGRGCIVKWAPQ--QE 355 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~-i~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~~~~p~--~~ 355 (470)
+.+++..|.......+.+..+++|+......+ ++.++.+. ..+.+.+ ..++++.+.+|.++ ..
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~---------~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~ 250 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS---------DFEKCKAYSRELGIEQRIIWHGWQSQPWEV 250 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc---------cHHHHHHHHHHcCCCCeEEEecccCCcHHH
Confidence 35566777765323345667778887764333 23333221 1122222 12467888888754 22
Q ss_pred ---hhccCCcceeecc----cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhc
Q 012151 356 ---VLAHPAVGGFWTH----SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMV 428 (470)
Q Consensus 356 ---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~ 428 (470)
.+..+++ +|.. |-..++.||+++|+|+|+.-. .......+++. ..|..++. -+.++++++|.++++
T Consensus 251 ~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv~~-~d~~~la~~i~~l~~ 323 (359)
T PRK09922 251 VQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELYTP-GNIDEFVGKLNKVIS 323 (359)
T ss_pred HHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEECC-CCHHHHHHHHHHHHh
Confidence 3444565 6653 336799999999999998651 22233456663 67877776 688999999999999
Q ss_pred cc
Q 012151 429 EA 430 (470)
Q Consensus 429 ~~ 430 (470)
|.
T Consensus 324 ~~ 325 (359)
T PRK09922 324 GE 325 (359)
T ss_pred Cc
Confidence 83
No 79
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.76 E-value=9.4e-06 Score=80.05 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=62.7
Q ss_pred cCCceeeeccChHh---hhccCCcceeecc----------cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeE
Q 012151 342 DGRGCIVKWAPQQE---VLAHPAVGGFWTH----------SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGL 408 (470)
Q Consensus 342 ~~~~~~~~~~p~~~---lL~~~~~~~~I~H----------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~ 408 (470)
.+++.+.+++|+.+ ++..+++ +|.. |-.+++.||+++|+|+|+-+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 46778889998765 5777887 6642 2357899999999999986653 466777774 8898
Q ss_pred EcCCcccHHHHHHHHHHHhcc
Q 012151 409 HSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 409 ~l~~~~~~~~l~~ai~~vl~~ 429 (470)
.++. -+.++++++|.++++|
T Consensus 317 ~~~~-~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVPE-GDVAALAAALGRLLAD 336 (367)
T ss_pred EECC-CCHHHHHHHHHHHHcC
Confidence 8876 5779999999999998
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.73 E-value=1.8e-05 Score=77.62 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=91.6
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCcccCCCchhHHH---H--hcCCceeeeccC
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANS-----RMPFLWVVRPGLVSGAEWVEPLPKGFLE---M--LDGRGCIVKWAP 352 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~p~~~~~---~--~~~~~~~~~~~p 352 (470)
+..+++..|+... .+....++++++.. +.+++++ +.+. ..+.+.+ . ..+++.+.++..
T Consensus 187 ~~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~-G~g~---------~~~~~~~~~~~~~~~~~v~~~g~~~ 254 (360)
T cd04951 187 DTFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIA-GDGP---------LRATLERLIKALGLSNRVKLLGLRD 254 (360)
T ss_pred CCEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEE-cCCC---------cHHHHHHHHHhcCCCCcEEEecccc
Confidence 3466777787653 33444555555443 3444443 2221 1122221 1 225677777765
Q ss_pred h-HhhhccCCcceeecccC----chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHh
Q 012151 353 Q-QEVLAHPAVGGFWTHSG----WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVM 427 (470)
Q Consensus 353 ~-~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl 427 (470)
+ ..+|..+++ +|.-.. .+++.||+++|+|+|+ .|...+...+++ .|... +. -+.+++++++.+++
T Consensus 255 ~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~----~~~~~~~e~i~~-~g~~~--~~-~~~~~~~~~i~~ll 324 (360)
T cd04951 255 DIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVA----TDAGGVREVVGD-SGLIV--PI-SDPEALANKIDEIL 324 (360)
T ss_pred cHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEE----ecCCChhhEecC-CceEe--CC-CCHHHHHHHHHHHH
Confidence 4 458888887 665432 5789999999999997 455556666666 35543 33 57889999999998
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 428 VEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 428 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
++. +.+++...+-++.+.+. -+....++++.+.++
T Consensus 325 ~~~--~~~~~~~~~~~~~~~~~----~s~~~~~~~~~~~y~ 359 (360)
T cd04951 325 KMS--GEERDIIGARRERIVKK----FSINSIVQQWLTLYT 359 (360)
T ss_pred hCC--HHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHhh
Confidence 431 45554444334444443 455555566555443
No 81
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.73 E-value=2.5e-05 Score=77.77 Aligned_cols=164 Identities=14% Similarity=0.100 Sum_probs=95.4
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcccCCCchhHHHH---hc---CCceee-eccChH
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANS--RMPFLWVVRPGLVSGAEWVEPLPKGFLEM---LD---GRGCIV-KWAPQQ 354 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~---~~---~~~~~~-~~~p~~ 354 (470)
.++++..|... +.+.+..+++|++.+ +.+++++.++.... .+-+.+.+. .. +++... +++++.
T Consensus 201 ~~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (388)
T TIGR02149 201 RPYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPDTP------EVAEEVRQAVALLDRNRTGIIWINKMLPKE 272 (388)
T ss_pred ceEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCCcH------HHHHHHHHHHHHhccccCceEEecCCCCHH
Confidence 34556667775 344566777777765 34555544332100 011222211 11 224433 667755
Q ss_pred h---hhccCCcceeecc----cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccH------HHHHH
Q 012151 355 E---VLAHPAVGGFWTH----SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLER------MEIER 421 (470)
Q Consensus 355 ~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~------~~l~~ 421 (470)
+ ++..+++ +|.- |...++.||+++|+|+|+... ......+++. +.|..++. -+. +++.+
T Consensus 273 ~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 273 ELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPP-DNSDADGFQAELAK 344 (388)
T ss_pred HHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCC-CCCcccchHHHHHH
Confidence 4 6778887 7653 224577999999999999543 4566677774 78888876 233 89999
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 422 AIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 422 ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
+|.++++| +.-+ ++|++..++.+.+.-+....++++++.+++
T Consensus 345 ~i~~l~~~---~~~~---~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 345 AINILLAD---PELA---KKMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHhC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999998 4332 233333333222224555666676666654
No 82
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.71 E-value=2e-05 Score=77.08 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=60.1
Q ss_pred cCCceeeeccChHh---hhccCCcceeec----------ccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeE
Q 012151 342 DGRGCIVKWAPQQE---VLAHPAVGGFWT----------HSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGL 408 (470)
Q Consensus 342 ~~~~~~~~~~p~~~---lL~~~~~~~~I~----------HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~ 408 (470)
++++.+.+++|+.+ ++..+++ +|. =|..+++.||+++|+|+|+.+.. .....+++. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceE
Confidence 46778889998655 6667777 665 23357899999999999986543 233455552 5888
Q ss_pred EcCCcccHHHHHHHHHHHhcc
Q 012151 409 HSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 409 ~l~~~~~~~~l~~ai~~vl~~ 429 (470)
..+. -+.++++++|.+++++
T Consensus 308 ~~~~-~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVPP-GDPEALADAIERLLDD 327 (355)
T ss_pred EeCC-CCHHHHHHHHHHHHhC
Confidence 7776 5889999999999998
No 83
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.71 E-value=5.9e-06 Score=80.03 Aligned_cols=132 Identities=18% Similarity=0.210 Sum_probs=78.1
Q ss_pred CCeEEEEEcCcccccCHHHHHHHHHHHHhCC---CCEEEE-EcCCCCCCCcccCCCchhHHHHh--cCCceeeeccCh-H
Q 012151 282 PKSVVYISFGSVIAINKDGFLEIAWGVANSR---MPFLWV-VRPGLVSGAEWVEPLPKGFLEML--DGRGCIVKWAPQ-Q 354 (470)
Q Consensus 282 ~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~---~~~i~~-~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~p~-~ 354 (470)
.++.+++..|+... .+....++++++.+. ..+-+. ++.+... ..+ ....++. .+++.+.++.+. .
T Consensus 187 ~~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~-----~~~-~~~~~~~~~~~~v~~~g~~~~~~ 258 (353)
T cd03811 187 PDGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVILGDGPLR-----EEL-EALAKELGLADRVHFLGFQSNPY 258 (353)
T ss_pred CCceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEEcCCccH-----HHH-HHHHHhcCCCccEEEecccCCHH
Confidence 34567777788753 334455556655542 233233 2221100 001 1111222 256677777664 3
Q ss_pred hhhccCCcceeecc----cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHH---HHHHHHHh
Q 012151 355 EVLAHPAVGGFWTH----SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEI---ERAIRRVM 427 (470)
Q Consensus 355 ~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l---~~ai~~vl 427 (470)
+++..+++ +|.- |..+++.||+++|+|+|+... ......+++. +.|...+. -+.+.+ .+++.+++
T Consensus 259 ~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-~~~~~~~~~~~~i~~~~ 330 (353)
T cd03811 259 PYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILEDG-ENGLLVPV-GDEAALAAAALALLDLL 330 (353)
T ss_pred HHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcCC-CceEEECC-CCHHHHHHHHHHHHhcc
Confidence 48878887 6643 335689999999999998543 3666778884 88988877 566777 56666666
Q ss_pred cc
Q 012151 428 VE 429 (470)
Q Consensus 428 ~~ 429 (470)
++
T Consensus 331 ~~ 332 (353)
T cd03811 331 LD 332 (353)
T ss_pred CC
Confidence 66
No 84
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.67 E-value=1.2e-05 Score=80.58 Aligned_cols=121 Identities=13% Similarity=0.117 Sum_probs=74.3
Q ss_pred EEEcCcccccCHHHHHHHHHHHHhCC---CCE-EEEEcCCCCCCCcccCCCchhHHHHhcC---Cce-eeeccChHhhhc
Q 012151 287 YISFGSVIAINKDGFLEIAWGVANSR---MPF-LWVVRPGLVSGAEWVEPLPKGFLEMLDG---RGC-IVKWAPQQEVLA 358 (470)
Q Consensus 287 ~vs~Gs~~~~~~~~~~~i~~al~~~~---~~~-i~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~-~~~~~p~~~lL~ 358 (470)
.+..|-.. ..+-+..+++|++.+. ..+ +++++.+. ..+.+++..++ +.. +.++.+..+++.
T Consensus 231 ~l~vGRL~--~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp---------~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~ 299 (462)
T PLN02846 231 AYYIGKMV--WSKGYKELLKLLHKHQKELSGLEVDLYGSGE---------DSDEVKAAAEKLELDVRVYPGRDHADPLFH 299 (462)
T ss_pred EEEEecCc--ccCCHHHHHHHHHHHHhhCCCeEEEEECCCc---------cHHHHHHHHHhcCCcEEEECCCCCHHHHHH
Confidence 34456665 4555777777776531 123 44444432 22333333322 222 346667777998
Q ss_pred cCCcceeeccc----CchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 359 HPAVGGFWTHS----GWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 359 ~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
..++ ||.-+ =..++.||+++|+|+|+.-... + ..+.+. +-|... -+.+++.+++.++|++
T Consensus 300 ~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~---~~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 300 DYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY---DDGKGFVRATLKALAE 363 (462)
T ss_pred hCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec---CCHHHHHHHHHHHHcc
Confidence 8887 88774 3568999999999999965443 2 344442 455444 2678999999999986
No 85
>PLN02275 transferase, transferring glycosyl groups
Probab=98.64 E-value=8.7e-05 Score=73.50 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=54.1
Q ss_pred CCceeee-ccChHh---hhccCCcceeec-c-----cC-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcC
Q 012151 343 GRGCIVK-WAPQQE---VLAHPAVGGFWT-H-----SG-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSE 411 (470)
Q Consensus 343 ~~~~~~~-~~p~~~---lL~~~~~~~~I~-H-----GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 411 (470)
+|+.+.. |+|..+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ..+...+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4455554 788766 4878888 763 1 12 3579999999999999643 3466777774 7898876
Q ss_pred CcccHHHHHHHHHHHh
Q 012151 412 WKLERMEIERAIRRVM 427 (470)
Q Consensus 412 ~~~~~~~l~~ai~~vl 427 (470)
++++|+++|.+++
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 4789999998875
No 86
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.59 E-value=0.00025 Score=75.26 Aligned_cols=79 Identities=16% Similarity=0.102 Sum_probs=53.6
Q ss_pred CCceeeecc-Ch---Hhhhcc-CC-cceeeccc---C-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC
Q 012151 343 GRGCIVKWA-PQ---QEVLAH-PA-VGGFWTHS---G-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW 412 (470)
Q Consensus 343 ~~~~~~~~~-p~---~~lL~~-~~-~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 412 (470)
+++.+.++. +. .+++.+ ++ .++||.-. | .-|+.||+++|+|+|+- +....+..|++. .-|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT----~~GG~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFAT----RFGGPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCC-CcEEEeCC
Confidence 566666653 32 235542 22 12277432 3 45999999999999994 444566777774 77988887
Q ss_pred cccHHHHHHHHHHHh
Q 012151 413 KLERMEIERAIRRVM 427 (470)
Q Consensus 413 ~~~~~~l~~ai~~vl 427 (470)
-++++++++|.+++
T Consensus 694 -~D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 -YHGEEAAEKIVDFF 707 (784)
T ss_pred -CCHHHHHHHHHHHH
Confidence 57899999998876
No 87
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.58 E-value=6.2e-05 Score=73.80 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=58.0
Q ss_pred CCceeeeccCh-HhhhccCCcceeecc----cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHH
Q 012151 343 GRGCIVKWAPQ-QEVLAHPAVGGFWTH----SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERM 417 (470)
Q Consensus 343 ~~~~~~~~~p~-~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 417 (470)
+++.+.++..+ .+++..+++ +|+- |-..++.||+++|+|+|+.... .....+.+ +.|..... -+++
T Consensus 249 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~----~~~~~i~~--~~~~~~~~-~~~~ 319 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTI----TKEVDLTD--LVKFLSLD-ESPE 319 (358)
T ss_pred CcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCC----chhhhhcc--CccEEeCC-CCHH
Confidence 56677776443 448877777 6654 4467999999999999985543 34444555 44544444 3679
Q ss_pred HHHHHHHHHhccchhHHHHH
Q 012151 418 EIERAIRRVMVEAEGQEMRA 437 (470)
Q Consensus 418 ~l~~ai~~vl~~~~~~~~~~ 437 (470)
+++++|.++++| +..++
T Consensus 320 ~~a~~i~~l~~~---~~~~~ 336 (358)
T cd03812 320 IWAEEILKLKSE---DRRER 336 (358)
T ss_pred HHHHHHHHHHhC---cchhh
Confidence 999999999998 55444
No 88
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.55 E-value=0.00016 Score=71.68 Aligned_cols=113 Identities=14% Similarity=0.039 Sum_probs=72.3
Q ss_pred CCceeeeccC-hHhhhccCCcceeec--c--cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHH
Q 012151 343 GRGCIVKWAP-QQEVLAHPAVGGFWT--H--SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERM 417 (470)
Q Consensus 343 ~~~~~~~~~p-~~~lL~~~~~~~~I~--H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 417 (470)
+++.+.++.. ...+|..+++ +|. + |-..++.||+++|+|+|+... ..+...+++. ..|..++. -+.+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~-~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP-GDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC-CCHH
Confidence 3445555433 3458888888 663 2 446699999999999999554 4456667673 67887776 5789
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 418 EIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 418 ~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
+++++|.+++++ +..++ ++++..++.+.+.-+....++++++.+++
T Consensus 327 ~la~~i~~l~~~---~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 327 ALARALQPYVSD---PAARR---AHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHHhC---HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999988 43322 22222222222225555666666665543
No 89
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.53 E-value=0.00016 Score=72.43 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=69.8
Q ss_pred CCceeeeccChH-hhhccCCcceee--cc--cCch-hhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccH
Q 012151 343 GRGCIVKWAPQQ-EVLAHPAVGGFW--TH--SGWN-STLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLER 416 (470)
Q Consensus 343 ~~~~~~~~~p~~-~lL~~~~~~~~I--~H--GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 416 (470)
+++.+.++++.. .++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+.. .+.. |.|..+. -++
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~--~~~ 349 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA--ADP 349 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC--CCH
Confidence 567888998854 37878888 66 32 3543 6999999999999987643221 1232 6676665 488
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 417 MEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 417 ~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
++++++|.++++| +..++ +|++..++.+.+.-+-...++.+.+.+
T Consensus 350 ~~la~ai~~ll~~---~~~~~---~~~~~ar~~v~~~fsw~~~~~~~~~~l 394 (397)
T TIGR03087 350 ADFAAAILALLAN---PAERE---ELGQAARRRVLQHYHWPRNLARLDALL 394 (397)
T ss_pred HHHHHHHHHHHcC---HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999998 54332 233333332222245555566655544
No 90
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.47 E-value=8.9e-07 Score=72.01 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=81.6
Q ss_pred eEEEEEcCcccccCHHHH-----HHHHHHHHhCCC-CEEEEEcCCCCCCCcccCCCchhHHHH-hcCCceee--eccCh-
Q 012151 284 SVVYISFGSVIAINKDGF-----LEIAWGVANSRM-PFLWVVRPGLVSGAEWVEPLPKGFLEM-LDGRGCIV--KWAPQ- 353 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~-----~~i~~al~~~~~-~~i~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~--~~~p~- 353 (470)
..+|||-||... ++.+ ....+.+.+.|. +.|++++.++.- .++..... ..+.+.+. +|-|-
T Consensus 4 ~~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 4 MTVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSL 74 (170)
T ss_pred eEEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccH
Confidence 479999999975 2222 235667777774 678888776321 11111111 11222333 67775
Q ss_pred HhhhccCCcceeecccCchhhHHhhhcCCceecCC----CccchhhhHHHHHhhhheeEEcCC
Q 012151 354 QEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQP----YLPDQMVNARYVSHFWRVGLHSEW 412 (470)
Q Consensus 354 ~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P----~~~DQ~~na~rv~~~~G~G~~l~~ 412 (470)
.+....+++ +|+|+|.||++|.|..|+|.|+++ +...|-.-|..+++ .|.=.....
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~p 134 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCTP 134 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEeec
Confidence 567767888 999999999999999999999999 45689999999999 587777665
No 91
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.45 E-value=0.00013 Score=72.21 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=70.0
Q ss_pred CCceeeecc--ChH---hhhccCCcceeeccc---C-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCc
Q 012151 343 GRGCIVKWA--PQQ---EVLAHPAVGGFWTHS---G-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWK 413 (470)
Q Consensus 343 ~~~~~~~~~--p~~---~lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 413 (470)
+++.+..+. +.. .+++.+++ |+.-+ | ..++.||+++|+|+|+.... .....+... ..|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--
Confidence 566777776 433 36777777 77543 2 44999999999999996533 334456663 6676554
Q ss_pred ccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 414 LERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 414 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
+.+.++.+|.+++++ ++.+++..+ ..++.+.+.-+....++++++.+++
T Consensus 323 -~~~~~a~~i~~ll~~---~~~~~~~~~---~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 -TVEEAAVRILYLLRD---PELRRKMGA---NAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred -CcHHHHHHHHHHHcC---HHHHHHHHH---HHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 356788899999988 554433222 2222222225666777777777654
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.42 E-value=0.00015 Score=70.97 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=61.6
Q ss_pred hcCCceeeeccChHh---hhccCCcceeecc----cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCc
Q 012151 341 LDGRGCIVKWAPQQE---VLAHPAVGGFWTH----SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWK 413 (470)
Q Consensus 341 ~~~~~~~~~~~p~~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 413 (470)
..+++.+.+++|+.+ +|..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeCC-
Confidence 346778889998765 6777777 5533 3356899999999999985542 22222333 2444444
Q ss_pred ccHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 012151 414 LERMEIERAIRRVMVEAEGQEMRARIMHLKEK 445 (470)
Q Consensus 414 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~ 445 (470)
-+.+++.++|.++++| +..+.+..+-+..
T Consensus 321 ~~~~~~~~~i~~l~~~---~~~~~~~~~~~~~ 349 (365)
T cd03809 321 LDPEALAAAIERLLED---PALREELRERGLA 349 (365)
T ss_pred CCHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence 4789999999999998 6655554444433
No 93
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.40 E-value=3.5e-05 Score=75.61 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=86.4
Q ss_pred EEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHh---hhccCCcc
Q 012151 287 YISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQE---VLAHPAVG 363 (470)
Q Consensus 287 ~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~---lL~~~~~~ 363 (470)
++..|+.. ..+....+++|++.++.+++++-.+. ..+.+.+...+|+.+.+++|+.+ ++..+++
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~----------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~- 264 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP----------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA- 264 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh----------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE-
Confidence 44567765 34457778888888886665543221 22344445568899999999854 6777887
Q ss_pred eeec--ccCc-hhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 364 GFWT--HSGW-NSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 364 ~~I~--HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
+|. .-|. .++.||+++|+|+|+....+ ....+++. +.|..++. -+.++|+++|.++++|
T Consensus 265 -~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-~~~~~la~~i~~l~~~ 326 (351)
T cd03804 265 -FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-QTVESLAAAVERFEKN 326 (351)
T ss_pred -EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-CCHHHHHHHHHHHHhC
Confidence 553 3343 35789999999999975433 44556663 78888877 5789999999999998
No 94
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.38 E-value=0.00011 Score=73.93 Aligned_cols=79 Identities=16% Similarity=0.089 Sum_probs=55.1
Q ss_pred cCCceeeeccChHh---hhccCCcceeeccc---C-chhhHHhhhcCCceecCCCccchhhhHHHHH---hhhheeEEcC
Q 012151 342 DGRGCIVKWAPQQE---VLAHPAVGGFWTHS---G-WNSTLESMCEGVPMICQPYLPDQMVNARYVS---HFWRVGLHSE 411 (470)
Q Consensus 342 ~~~~~~~~~~p~~~---lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~---~~~G~G~~l~ 411 (470)
.+++.+.+++|+.+ +|..+++ +|+-. | .-++.||+++|+|+|+.-..+. ....++ .. ..|...+
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~~ 377 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLAS 377 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEeC
Confidence 46788889998776 6777777 66422 2 3488999999999998554321 112233 32 5676642
Q ss_pred CcccHHHHHHHHHHHhcc
Q 012151 412 WKLERMEIERAIRRVMVE 429 (470)
Q Consensus 412 ~~~~~~~l~~ai~~vl~~ 429 (470)
++++++++|.+++++
T Consensus 378 ---d~~~la~ai~~ll~~ 392 (419)
T cd03806 378 ---TAEEYAEAIEKILSL 392 (419)
T ss_pred ---CHHHHHHHHHHHHhC
Confidence 889999999999986
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=0.0013 Score=69.55 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=71.3
Q ss_pred CCceeeeccChH-hhhccCCcceeec---ccC-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC-cccH
Q 012151 343 GRGCIVKWAPQQ-EVLAHPAVGGFWT---HSG-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW-KLER 416 (470)
Q Consensus 343 ~~~~~~~~~p~~-~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~~~ 416 (470)
+++.+.+|.+.. .+|..+++ ||. +.| .+++.||+++|+|+|+... ......|++. ..|..++. +.+.
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~~d~~~ 646 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPADTVTA 646 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCCCCCCh
Confidence 667888887743 37878887 665 445 5689999999999999654 3455667673 57888876 5666
Q ss_pred HHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 417 MEIERAIRRVMVEAE-GQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 417 ~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
+++++++.+++.+.. .+.+++++++.. .+. -+....+++.++.+
T Consensus 647 ~~La~aL~~ll~~l~~~~~l~~~ar~~a---~~~----FS~~~~~~~~~~lY 691 (694)
T PRK15179 647 PDVAEALARIHDMCAADPGIARKAADWA---SAR----FSLNQMIASTVRCY 691 (694)
T ss_pred HHHHHHHHHHHhChhccHHHHHHHHHHH---HHh----CCHHHHHHHHHHHh
Confidence 677777766654210 055665554433 222 44555666665544
No 96
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.33 E-value=5.4e-05 Score=74.58 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=80.1
Q ss_pred CCeEEEEEcCccc--c-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHh--cCCceeeeccC---h
Q 012151 282 PKSVVYISFGSVI--A-INKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEML--DGRGCIVKWAP---Q 353 (470)
Q Consensus 282 ~~~~I~vs~Gs~~--~-~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~p---~ 353 (470)
+++.|++++=... . ...+.+..+++++...+.+++++..... ++ ...+.+.+.+.. .+++.+.+-++ .
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~---~~~i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AG---SRIINEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CC---chHHHHHHHHHhcCCCCEEEECCCChHHH
Confidence 3468878875432 2 4567899999999888766666543221 11 001112222222 35677776555 4
Q ss_pred HhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhc
Q 012151 354 QEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMV 428 (470)
Q Consensus 354 ~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~ 428 (470)
..++.++++ +|+.++.|. .||.+.|+|+|.+- +.+ .-+ +. |-.+.+- ..++++|.+++.++++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~~-g~nvl~v-g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-LR-ADSVIDV-DPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-hh-cCeEEEe-CCCHHHHHHHHHHHhC
Confidence 458878888 999886665 99999999999774 211 111 21 3332211 3588999999999544
No 97
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=0.0013 Score=63.78 Aligned_cols=335 Identities=13% Similarity=0.113 Sum_probs=178.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEe-CCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHH
Q 012151 18 VILFPLPFQGHINPMLHLASILYSK--GFSVTIIH-TDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAI 94 (470)
Q Consensus 18 il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
.+-+-.-+-|-++-..+|.++|.++ +..+++-+ ++-..+.+.+.. ...+...-+|=++ ..
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~--~~~v~h~YlP~D~----------~~----- 113 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF--GDSVIHQYLPLDL----------PI----- 113 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc--CCCeEEEecCcCc----------hH-----
Confidence 4455555669999999999999999 77777766 444444444310 1124444444111 11
Q ss_pred HhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCc--cchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhccCC
Q 012151 95 NGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFW--FFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERAYL 172 (470)
Q Consensus 95 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (470)
.+...++. ++||++|.-..- +....-++..|+|.+.+.-= +...++
T Consensus 114 ------~v~rFl~~------------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------LS~rS~- 161 (419)
T COG1519 114 ------AVRRFLRK------------WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------LSDRSF- 161 (419)
T ss_pred ------HHHHHHHh------------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------echhhh-
Confidence 11223444 489988765444 44556678899999986421 111111
Q ss_pred CCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCC-CCeeee
Q 012151 173 PVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLS-IPIFPI 251 (470)
Q Consensus 173 p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~-~~v~~v 251 (470)
.++..+-.. ....+..-+.++..+-..-+- + .. ++ ++|...
T Consensus 162 ----------------------------~~y~k~~~~---~~~~~~~i~li~aQse~D~~R--f----~~-LGa~~v~v~ 203 (419)
T COG1519 162 ----------------------------ARYAKLKFL---ARLLFKNIDLILAQSEEDAQR--F----RS-LGAKPVVVT 203 (419)
T ss_pred ----------------------------HHHHHHHHH---HHHHHHhcceeeecCHHHHHH--H----Hh-cCCcceEEe
Confidence 011111111 112234455666666443321 1 11 22 348888
Q ss_pred ccCCCCCCCCCCCCCccchhhhhhhcCCCCC-CeEEEEEcCcccccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCc
Q 012151 252 GPLHKCSPASSGSLSSQDYQRSISWLDKQTP-KSVVYISFGSVIAINKDGFLEIAWGVANSR--MPFLWVVRPGLVSGAE 328 (470)
Q Consensus 252 Gpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~--~~~i~~~~~~~~~~~~ 328 (470)
|-+-..... .+..-.....|-..-+. ++ +.+..+|.. ...+.+.....++.+.. ...||+ ..+.
T Consensus 204 GNlKfd~~~-----~~~~~~~~~~~r~~l~~~r~-v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlV-PRHp----- 270 (419)
T COG1519 204 GNLKFDIEP-----PPQLAAELAALRRQLGGHRP-VWVAASTHE-GEEEIILDAHQALKKQFPNLLLILV-PRHP----- 270 (419)
T ss_pred cceeecCCC-----ChhhHHHHHHHHHhcCCCCc-eEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEe-cCCh-----
Confidence 887655221 11110112223222122 33 445555543 34454555666666543 344444 2221
Q ss_pred ccCCCchhHHHHhc------------------CCceeeeccC-hHhhhccCCc----ceeecccCchhhHHhhhcCCcee
Q 012151 329 WVEPLPKGFLEMLD------------------GRGCIVKWAP-QQEVLAHPAV----GGFWTHSGWNSTLESMCEGVPMI 385 (470)
Q Consensus 329 ~~~~~p~~~~~~~~------------------~~~~~~~~~p-~~~lL~~~~~----~~~I~HGG~gs~~eal~~GvP~v 385 (470)
+..+ .+++... .++.+.+-+- ...++.-+++ +-++.+||+| ..|++++|+|+|
T Consensus 271 --ERf~-~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi 346 (419)
T COG1519 271 --ERFK-AVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVI 346 (419)
T ss_pred --hhHH-HHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEE
Confidence 1111 1111111 1334444333 2223433433 1145699988 679999999999
Q ss_pred cCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012151 386 CQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLID 465 (470)
Q Consensus 386 ~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
.=|+..-|.+-++++.++ |.|+.++. ++.|.+++..+++| +..+++..+-...+-+. -..++++.++
T Consensus 347 ~Gp~~~Nf~ei~~~l~~~-ga~~~v~~---~~~l~~~v~~l~~~---~~~r~~~~~~~~~~v~~------~~gal~r~l~ 413 (419)
T COG1519 347 FGPYTFNFSDIAERLLQA-GAGLQVED---ADLLAKAVELLLAD---EDKREAYGRAGLEFLAQ------NRGALARTLE 413 (419)
T ss_pred eCCccccHHHHHHHHHhc-CCeEEECC---HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHH------hhHHHHHHHH
Confidence 999999999999999996 99999876 68889999999887 44333332222222221 1236666666
Q ss_pred HHHc
Q 012151 466 HILS 469 (470)
Q Consensus 466 ~l~~ 469 (470)
.|++
T Consensus 414 ~l~~ 417 (419)
T COG1519 414 ALKP 417 (419)
T ss_pred Hhhh
Confidence 6654
No 98
>PLN00142 sucrose synthase
Probab=98.31 E-value=0.00048 Score=73.24 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=45.8
Q ss_pred eecc---cCch-hhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHH----hccchhHHHH
Q 012151 365 FWTH---SGWN-STLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRV----MVEAEGQEMR 436 (470)
Q Consensus 365 ~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~v----l~~~~~~~~~ 436 (470)
||.- -|.| ++.||+++|+|+|+.. .......|++. .-|..++. -++++++++|.++ ++| +..+
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATd----vGG~~EIV~dG-~tG~LV~P-~D~eaLA~aI~~lLekLl~D---p~lr 740 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATC----QGGPAEIIVDG-VSGFHIDP-YHGDEAANKIADFFEKCKED---PSYW 740 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEEEeCC-CCHHHHHHHHHHHHHHhcCC---HHHH
Confidence 7653 4544 8999999999999954 44556677773 67988887 5778888887665 466 5444
Q ss_pred HH
Q 012151 437 AR 438 (470)
Q Consensus 437 ~~ 438 (470)
++
T Consensus 741 ~~ 742 (815)
T PLN00142 741 NK 742 (815)
T ss_pred HH
Confidence 33
No 99
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.29 E-value=0.0012 Score=67.65 Aligned_cols=185 Identities=13% Similarity=0.030 Sum_probs=97.9
Q ss_pred CCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHH--hC--CCCEEEEEc
Q 012151 245 SIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVA--NS--RMPFLWVVR 320 (470)
Q Consensus 245 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~--~~--~~~~i~~~~ 320 (470)
+.++.|||--..+.-. ..+.. ++..+-+.-.+++++|-+--||-...-...+..+++|.+ .. +.++++...
T Consensus 380 gv~v~yVGHPL~d~i~----~~~~~-~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a 454 (608)
T PRK01021 380 PLRTVYLGHPLVETIS----SFSPN-LSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSA 454 (608)
T ss_pred CCCeEEECCcHHhhcc----cCCCH-HHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecC
Confidence 5789999965554211 11111 223333333346678989899987644445566777776 43 334444321
Q ss_pred CCCCCCCcccCCCchhHHHHhcC-C---ceeeeccChHhhhccCCcceeecccCchhhHHhhhcCCceecCC-Cccchhh
Q 012151 321 PGLVSGAEWVEPLPKGFLEMLDG-R---GCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQP-YLPDQMV 395 (470)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~~~-~---~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P-~~~DQ~~ 395 (470)
.. ...+.+++...+ + +.++.--...+++..+++ .+.-+| ..|.|+..+|+|||++= ...=-+.
T Consensus 455 ~~---------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~ 522 (608)
T PRK01021 455 NP---------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDTF 522 (608)
T ss_pred ch---------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHHH
Confidence 11 011222222211 1 122211012578878887 888887 46789999999999853 2222333
Q ss_pred hHHHHHh---h--------h--heeEEcC--C-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q 012151 396 NARYVSH---F--------W--RVGLHSE--W-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCL 450 (470)
Q Consensus 396 na~rv~~---~--------~--G~G~~l~--~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~ 450 (470)
.|+++.+ . + .+=..+- . +.|++.|++++ ++|.| +..+++.++=-+++++.+
T Consensus 523 Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d---~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 523 LAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKT---SQSKEKQKDACRDLYQAM 589 (608)
T ss_pred HHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcC---HHHHHHHHHHHHHHHHHh
Confidence 4455444 0 0 1111122 2 57899999997 88887 544444443333333333
No 100
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.27 E-value=1.4e-05 Score=77.96 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=87.7
Q ss_pred CCCeEEEEEcCcccccC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCCCCcccCCCchhHHHHhc--CCceeeeccCh
Q 012151 281 TPKSVVYISFGSVIAIN-K---DGFLEIAWGVANS-RMPFLWVVRPGLVSGAEWVEPLPKGFLEMLD--GRGCIVKWAPQ 353 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~-~---~~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~p~ 353 (470)
.+++.|++++=...... + +.+..++.++.+. +.++||.+.+.... ...+.+... +|+++++-+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~--------~~~i~~~l~~~~~v~~~~~l~~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRG--------SDIIIEKLKKYDNVRLIEPLGY 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHH--------HHHHHHHHTT-TTEEEE----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchH--------HHHHHHHhcccCCEEEECCCCH
Confidence 56789999984444433 3 4555567777766 67888888543211 122222222 47788766654
Q ss_pred ---HhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccc
Q 012151 354 ---QEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEA 430 (470)
Q Consensus 354 ---~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~ 430 (470)
..+|.++++ +|+.+| |-.-||.+.|+|+|.+= |+...=.-+.. |..+.+. .++++|.+++++++++
T Consensus 250 ~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR---~~geRqe~r~~--~~nvlv~--~~~~~I~~ai~~~l~~- 318 (346)
T PF02350_consen 250 EEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIR---DSGERQEGRER--GSNVLVG--TDPEAIIQAIEKALSD- 318 (346)
T ss_dssp HHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECS---SS-S-HHHHHT--TSEEEET--SSHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEec---CCCCCHHHHhh--cceEEeC--CCHHHHHHHHHHHHhC-
Confidence 458888888 999999 55559999999999992 22222222222 5555433 6899999999999987
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 431 EGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 431 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
..+.++...... . .|..++.++|++.|+
T Consensus 319 --~~~~~~~~~~~n----p----YgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 319 --KDFYRKLKNRPN----P----YGDGNASERIVEILK 346 (346)
T ss_dssp --HHHHHHHHCS------T----T-SS-HHHHHHHHHH
T ss_pred --hHHHHhhccCCC----C----CCCCcHHHHHHHhhC
Confidence 455544333222 2 333455566665553
No 101
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.23 E-value=0.00054 Score=70.24 Aligned_cols=162 Identities=13% Similarity=0.055 Sum_probs=90.9
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChH---hhh
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQ---EVL 357 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~---~lL 357 (470)
..+++..|.... .+.+..+++|++.+ +.+++++ +.+. +. .+..-..+.++.++++.+....+.. .++
T Consensus 291 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~-G~g~-~~---~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 291 VPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVL-GTGD-PE---LEEALRELAERYPGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEE-CCCC-HH---HHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Confidence 355566677763 33455556665543 4444443 3221 00 0001112223445566666555544 377
Q ss_pred ccCCcceeeccc---Cch-hhHHhhhcCCceecCCCccchhhhHHHHHhhh------heeEEcCCcccHHHHHHHHHHHh
Q 012151 358 AHPAVGGFWTHS---GWN-STLESMCEGVPMICQPYLPDQMVNARYVSHFW------RVGLHSEWKLERMEIERAIRRVM 427 (470)
Q Consensus 358 ~~~~~~~~I~HG---G~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~------G~G~~l~~~~~~~~l~~ai~~vl 427 (470)
+.+++ ++.-. |.| +.+||+++|+|+|+-...+ ....|.+ - +.|...+. -++++|+++|.+++
T Consensus 364 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~-~~~~~~~~~G~l~~~-~d~~~la~~i~~~l 435 (473)
T TIGR02095 364 AGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVD-GDPEAESGTGFLFEE-YDPGALLAALSRAL 435 (473)
T ss_pred HhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEec-CCCCCCCCceEEeCC-CCHHHHHHHHHHHH
Confidence 77777 77542 444 7899999999999865432 2222222 2 67888777 67899999999998
Q ss_pred c----cchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 428 V----EAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 428 ~----~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
. + ++.+ +++++... .+.-+-.+.+++.++.+++
T Consensus 436 ~~~~~~---~~~~---~~~~~~~~---~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 436 RLYRQD---PSLW---EALQKNAM---SQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHhcC---HHHH---HHHHHHHh---ccCCCcHHHHHHHHHHHHh
Confidence 7 4 3322 23333222 1225566667777776655
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.17 E-value=0.00039 Score=71.08 Aligned_cols=135 Identities=11% Similarity=0.138 Sum_probs=75.3
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCcee-eeccChH--hh
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCI-VKWAPQQ--EV 356 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~p~~--~l 356 (470)
+..+++..|... +.+.+..+++|++.+ +.+++++ +.+... ....-....++.++++.+ ..+-... .+
T Consensus 281 ~~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lviv-G~g~~~----~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 281 DAPLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLL-GTGDPE----LEEAFRALAARYPGKVGVQIGYDEALAHRI 353 (466)
T ss_pred CCcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEE-ecCcHH----HHHHHHHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 345666677775 334455566666543 4555544 322100 000011223344455544 3553222 46
Q ss_pred hccCCcceeecc---cCch-hhHHhhhcCCceecCCCcc--chhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhc
Q 012151 357 LAHPAVGGFWTH---SGWN-STLESMCEGVPMICQPYLP--DQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMV 428 (470)
Q Consensus 357 L~~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~ 428 (470)
++.+++ +|.- -|.| +.+||+++|+|.|+....+ |.-.+...-... +.|..++. -++++|+++|.++++
T Consensus 354 ~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-~d~~~la~~i~~~l~ 427 (466)
T PRK00654 354 YAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-FNAEDLLRALRRALE 427 (466)
T ss_pred HhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHHH
Confidence 778887 7753 3544 8899999999999865432 211111000232 77888877 678999999999886
No 103
>PLN02949 transferase, transferring glycosyl groups
Probab=98.13 E-value=0.0033 Score=63.87 Aligned_cols=80 Identities=19% Similarity=0.116 Sum_probs=52.4
Q ss_pred cCCceeeeccChHh---hhccCCcceeec---ccCch-hhHHhhhcCCceecCCCccchhhhHHHHHh-hhh-eeEEcCC
Q 012151 342 DGRGCIVKWAPQQE---VLAHPAVGGFWT---HSGWN-STLESMCEGVPMICQPYLPDQMVNARYVSH-FWR-VGLHSEW 412 (470)
Q Consensus 342 ~~~~~~~~~~p~~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~-~~G-~G~~l~~ 412 (470)
.+++.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.. .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 46788889998766 6767776 763 23444 799999999999997654310 011111 001 23322
Q ss_pred cccHHHHHHHHHHHhcc
Q 012151 413 KLERMEIERAIRRVMVE 429 (470)
Q Consensus 413 ~~~~~~l~~ai~~vl~~ 429 (470)
-+.++++++|.+++++
T Consensus 407 -~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 -TTVEEYADAILEVLRM 422 (463)
T ss_pred -CCHHHHHHHHHHHHhC
Confidence 2789999999999984
No 104
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=0.00029 Score=67.57 Aligned_cols=328 Identities=14% Similarity=0.117 Sum_probs=173.0
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCC-CeEEEEeCCCCC--cccccccCCCCCeeEEecC-CCCCCCc-ccccCHHHHHHH
Q 012151 19 ILFPLPFQGHINPMLHLASILYSKG-FSVTIIHTDFNF--SSTNYFSCNYPHFDFHSFP-DGFSETE-ASVEDVAVFFTA 93 (470)
Q Consensus 19 l~~~~~~~GH~~p~l~La~~L~~rG-h~V~~~~~~~~~--~~~~~~~~~~~gi~~~~~~-~~~~~~~-~~~~~~~~~~~~ 93 (470)
+++-++++=.+.-+-+|.++|.+.+ .+..++.+.... +.... -++...++ ..+..+. ....+..+..
T Consensus 6 v~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~------~le~~~i~~pdy~L~i~~~~~tl~~~t-- 77 (383)
T COG0381 6 VLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQ------VLELFGIRKPDYDLNIMKPGQTLGEIT-- 77 (383)
T ss_pred EEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHH------HHHHhCCCCCCcchhccccCCCHHHHH--
Confidence 4445678889999999999999987 777777776554 33221 11111111 1111110 1112233322
Q ss_pred HHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCC--Cc-cchHHHHhhcCCCeEEEecccHHHHHHHHhchhhhhcc
Q 012151 94 INGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDA--FW-FFTHTVAADFKLPTIVLQTCGVSGFLAFTAYPILRERA 170 (470)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~--~~-~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 170 (470)
..+...+.+++++. +||+|++.. .. ++++.+|.+.+||+.-+-.. ......
T Consensus 78 --~~~i~~~~~vl~~~------------kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAG------------lRt~~~ 131 (383)
T COG0381 78 --GNIIEGLSKVLEEE------------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAG------------LRTGDL 131 (383)
T ss_pred --HHHHHHHHHHHHhh------------CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecc------------cccCCC
Confidence 22334555566654 899998653 22 66789999999999875322 000000
Q ss_pred CCCCCCCCCCcccCCCCCCCCccccCcccccCchhHHHHHHHHHhhhccccEEEEcChHHhhHHHHHHHhhccCCC-Cee
Q 012151 171 YLPVQDHQSLETPVTEFPPLRVKDIQVLETMDQENVYRFVSAIDTQIMASSGVIWNSYRDLEQAGLGLAHQKYLSI-PIF 249 (470)
Q Consensus 171 ~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~p~~~~~~~~~~~~-~v~ 249 (470)
+.| .+..+...+ .-++..+.++--.-+ +.+ +...++ ++.
T Consensus 132 ~~P------------------------------EE~NR~l~~-----~~S~~hfapte~ar~----nLl-~EG~~~~~If 171 (383)
T COG0381 132 YFP------------------------------EEINRRLTS-----HLSDLHFAPTEIARK----NLL-REGVPEKRIF 171 (383)
T ss_pred CCc------------------------------HHHHHHHHH-----HhhhhhcCChHHHHH----HHH-HcCCCccceE
Confidence 001 111111111 112222333322211 122 443434 377
Q ss_pred eeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCC
Q 012151 250 PIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSG 326 (470)
Q Consensus 250 ~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~ 326 (470)
.+|-...+.-.........++......+. ...+..|++|+=-..... +-+..+.+|+.+. ...+.+++..+..+.
T Consensus 172 vtGnt~iDal~~~~~~~~~~~~~~~~~~~-~~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~~ 249 (383)
T COG0381 172 VTGNTVIDALLNTRDRVLEDSKILAKGLD-DKDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRPR 249 (383)
T ss_pred EeCChHHHHHHHHHhhhccchhhHHhhhc-cccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCChh
Confidence 77754432100000011111011111122 244568888864444332 4555666655442 123444544432211
Q ss_pred CcccCCCchhHHHHhcC--Cceee---eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHH
Q 012151 327 AEWVEPLPKGFLEMLDG--RGCIV---KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVS 401 (470)
Q Consensus 327 ~~~~~~~p~~~~~~~~~--~~~~~---~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~ 401 (470)
+.+-...++.+ ++.+. +|.+...++.++-+ ++|-+| |-.-||-..|+|++++=...+++. +++
T Consensus 250 ------v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~ 317 (383)
T COG0381 250 ------VRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVE 317 (383)
T ss_pred ------hhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---cee
Confidence 11111234443 36665 67788889989988 999988 567899999999999999999998 333
Q ss_pred hhhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHH
Q 012151 402 HFWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMH 441 (470)
Q Consensus 402 ~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~ 441 (470)
. |.-+.+. .+.+.|.+++.+++++ +++.++...
T Consensus 318 a--gt~~lvg--~~~~~i~~~~~~ll~~---~~~~~~m~~ 350 (383)
T COG0381 318 A--GTNILVG--TDEENILDAATELLED---EEFYERMSN 350 (383)
T ss_pred c--CceEEeC--ccHHHHHHHHHHHhhC---hHHHHHHhc
Confidence 2 4443333 5779999999999999 666654443
No 105
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.12 E-value=9.7e-05 Score=73.41 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=78.1
Q ss_pred HhcCCceeeeccChHh---hhccCCcceeecc----cCc-hhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcC
Q 012151 340 MLDGRGCIVKWAPQQE---VLAHPAVGGFWTH----SGW-NSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSE 411 (470)
Q Consensus 340 ~~~~~~~~~~~~p~~~---lL~~~~~~~~I~H----GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 411 (470)
+.+.++.+.+++|+.+ +|+.+++ +|.. .|. .++.||+++|+|+|+... ..+...+++. ..|..+.
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~ 326 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLA 326 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEe
Confidence 3456778889998655 5877888 7653 333 577899999999999654 3455566663 6787553
Q ss_pred CcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 412 WKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 412 ~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
...+.++++++|.++++| +..++ +++..++.+.+.-+-...++++++.|++
T Consensus 327 ~~~d~~~la~~I~~ll~d---~~~~~----~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 327 EPMTSDSIISDINRTLAD---PELTQ----IAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCCCHHHHHHHHHHHHcC---HHHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 325889999999999998 55433 3333333222225666777777776654
No 106
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.11 E-value=9.6e-05 Score=74.06 Aligned_cols=162 Identities=13% Similarity=0.152 Sum_probs=100.6
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEE-EcCCCCCCCcccCCCchhHH---HH--hcCCceeeeccChH
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWV-VRPGLVSGAEWVEPLPKGFL---EM--LDGRGCIVKWAPQQ 354 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~-~~~~~~~~~~~~~~~p~~~~---~~--~~~~~~~~~~~p~~ 354 (470)
++.+++.|... ..+.+..+++|++.+ +.++-+. ++.+. ..+.+. ++ ..+++.+.+|+|+.
T Consensus 222 ~~~il~vGrl~--~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~---------~~~~l~~~~~~~~l~~~V~~~G~~~~~ 290 (406)
T PRK15427 222 PLEIISVARLT--EKKGLHVAIEACRQLKEQGVAFRYRILGIGP---------WERRLRTLIEQYQLEDVVEMPGFKPSH 290 (406)
T ss_pred CeEEEEEeCcc--hhcCHHHHHHHHHHHHhhCCCEEEEEEECch---------hHHHHHHHHHHcCCCCeEEEeCCCCHH
Confidence 45556667775 334455566666543 3333333 33221 112222 12 23667888999987
Q ss_pred h---hhccCCcceeecc---------cCc-hhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHH
Q 012151 355 E---VLAHPAVGGFWTH---------SGW-NSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIER 421 (470)
Q Consensus 355 ~---lL~~~~~~~~I~H---------GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ 421 (470)
+ ++..+++ +|.- -|. .+++||+++|+|+|+.... .....+++. ..|..++. -+.+++++
T Consensus 291 el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~lv~~-~d~~~la~ 362 (406)
T PRK15427 291 EVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGWLVPE-NDAQALAQ 362 (406)
T ss_pred HHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceEEeCC-CCHHHHHH
Confidence 6 6767777 7653 244 5789999999999996443 345566663 67887776 57899999
Q ss_pred HHHHHhc-cchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 012151 422 AIRRVMV-EAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILSF 470 (470)
Q Consensus 422 ai~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (470)
+|.++++ | ++. .++|++..++.+.+.-+....++++.+.++++
T Consensus 363 ai~~l~~~d---~~~---~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 363 RLAAFSQLD---TDE---LAPVVKRAREKVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred HHHHHHhCC---HHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 9999999 8 432 23333444433333366777788888777653
No 107
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.10 E-value=0.0033 Score=61.48 Aligned_cols=192 Identities=17% Similarity=0.127 Sum_probs=110.0
Q ss_pred CCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhC-----CCCEEEEE
Q 012151 245 SIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANS-----RMPFLWVV 319 (470)
Q Consensus 245 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~-----~~~~i~~~ 319 (470)
+.++.|||--..+.-. ....+ ....+.+ -.+++++|-+--||-..--...+..++++.+.+ +.++++.+
T Consensus 152 g~~~~~VGHPl~d~~~----~~~~~-~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~ 225 (373)
T PF02684_consen 152 GVPVTYVGHPLLDEVK----PEPDR-AEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPV 225 (373)
T ss_pred CCCeEEECCcchhhhc----cCCCH-HHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4679999965554221 11111 1222333 235677999999998763333444556665442 34455444
Q ss_pred cCCCCCCCcccCCCch---hHHHHhcCCceee-eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCC-ccchh
Q 012151 320 RPGLVSGAEWVEPLPK---GFLEMLDGRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPY-LPDQM 394 (470)
Q Consensus 320 ~~~~~~~~~~~~~~p~---~~~~~~~~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~-~~DQ~ 394 (470)
.... ..+ ........++.+. ..-.-.++|..+++ .+.-+| ..|.|+...|+|||++=- ..=-+
T Consensus 226 a~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~ 293 (373)
T PF02684_consen 226 APEV---------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTY 293 (373)
T ss_pred CCHH---------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHH
Confidence 2210 111 1111122223332 22245557877887 777777 568899999999998642 22344
Q ss_pred hhHHHHHhhhheeEEc-------------CC-cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 012151 395 VNARYVSHFWRVGLHS-------------EW-KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQS 459 (470)
Q Consensus 395 ~na~rv~~~~G~G~~l-------------~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 459 (470)
..|+++.. ... +.+ -. +.|++.|++++.+++.| +..++......+.+++....+..+..+
T Consensus 294 ~iak~lvk-~~~-isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 294 FIAKRLVK-VKY-ISLPNIIAGREVVPELIQEDATPENIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred HHHHHhhc-CCE-eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 45566544 232 121 11 58999999999999999 655666667777777766655655544
No 108
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.03 E-value=0.012 Score=58.21 Aligned_cols=108 Identities=15% Similarity=0.072 Sum_probs=65.1
Q ss_pred CCceeeeccChHh---hhccCCcceee------cccCc-hhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC
Q 012151 343 GRGCIVKWAPQQE---VLAHPAVGGFW------THSGW-NSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW 412 (470)
Q Consensus 343 ~~~~~~~~~p~~~---lL~~~~~~~~I------~HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 412 (470)
+|+.+.+++|+.+ .+.++++..+- +.++. +.+.|++++|+|+|+.++ ...++. .+.+....
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~~~~~~~- 324 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-EDEVVLIA- 324 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cCcEEEeC-
Confidence 7789999999776 57677872221 22332 458999999999998753 223344 24233333
Q ss_pred cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 413 KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 413 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
-+.+++.++|++++.+.+....++ + .+ +.+. .+-...++++++.|++
T Consensus 325 -~d~~~~~~ai~~~l~~~~~~~~~~-~---~~-~~~~----~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 325 -DDPEEFVAAIEKALLEDGPARERR-R---LR-LAAQ----NSWDARAAEMLEALQE 371 (373)
T ss_pred -CCHHHHHHHHHHHHhcCCchHHHH-H---HH-HHHH----CCHHHHHHHHHHHHHh
Confidence 378999999999876421112221 1 11 3332 5556666666666654
No 109
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.97 E-value=0.0002 Score=71.84 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=96.2
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCcccCCCchhHHHH---h--cCCceeeeccCh
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANS-----RMPFLWVVRPGLVSGAEWVEPLPKGFLEM---L--DGRGCIVKWAPQ 353 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~p~~~~~~---~--~~~~~~~~~~p~ 353 (470)
+..+++.|.... .+.+..+++|+... +.++.|++-++.. ..+.+.+. . .+++.+.+|+++
T Consensus 230 ~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--------~~~~l~~~~~~~~~~~~V~f~G~v~~ 299 (407)
T cd04946 230 TLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGP--------LEDTLKELAESKPENISVNFTGELSN 299 (407)
T ss_pred CEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--------HHHHHHHHHHhcCCCceEEEecCCCh
Confidence 455666777763 33455556666543 2356565433210 11122211 1 245778899997
Q ss_pred Hh---hhccCCcceeecccC----chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHH
Q 012151 354 QE---VLAHPAVGGFWTHSG----WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRV 426 (470)
Q Consensus 354 ~~---lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~v 426 (470)
.+ ++..+++.+||...- ..+++||+++|+|+|+.. .......+.+. +.|..++..-+.++++++|.++
T Consensus 300 ~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~-~~G~l~~~~~~~~~la~~I~~l 374 (407)
T cd04946 300 SEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNG-GNGLLLSKDPTPNELVSSLSKF 374 (407)
T ss_pred HHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCC-CcEEEeCCCCCHHHHHHHHHHH
Confidence 75 444444445776553 568999999999999844 44566777773 5898887645889999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012151 427 MVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLI 464 (470)
Q Consensus 427 l~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
++| +..+ .+|++..++.+.+.-+.....++++
T Consensus 375 l~~---~~~~---~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 375 IDN---EEEY---QTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HhC---HHHH---HHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 997 4333 3344444444333355555555443
No 110
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.97 E-value=0.001 Score=68.79 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=72.5
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhCC---CCE-EEEEcCCCCCCCcccCCCchhHHHHhcC---CceeeeccChH-h
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANSR---MPF-LWVVRPGLVSGAEWVEPLPKGFLEMLDG---RGCIVKWAPQQ-E 355 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~~---~~~-i~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~p~~-~ 355 (470)
.++|+ |-.. ..+.+..+++|++.+. ..+ +++++.+. .-+.+....++ ++.+.++.++. +
T Consensus 548 giLfV--GRLa--~EKGld~LLeAla~L~~~~pnvrLvIVGDGP---------~reeLe~la~eLgL~V~FLG~~dd~~~ 614 (794)
T PLN02501 548 GAYFL--GKMV--WAKGYRELIDLLAKHKNELDGFNLDVFGNGE---------DAHEVQRAAKRLDLNLNFLKGRDHADD 614 (794)
T ss_pred ceEEE--Eccc--ccCCHHHHHHHHHHHHhhCCCeEEEEEcCCc---------cHHHHHHHHHHcCCEEEecCCCCCHHH
Confidence 35554 5443 4556777777776531 122 33444331 22333322222 24455666655 4
Q ss_pred hhccCCcceeeccc---C-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 356 VLAHPAVGGFWTHS---G-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 356 lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
+++..++ ||.-+ | ..++.||+++|+|+|+....+.. . +.+. +-|. +. -+.++++++|.+++++
T Consensus 615 lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V~~g-~nGl-l~--~D~EafAeAI~~LLsd 681 (794)
T PLN02501 615 SLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-FRSF-PNCL-TY--KTSEDFVAKVKEALAN 681 (794)
T ss_pred HHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-Eeec-CCeE-ec--CCHHHHHHHHHHHHhC
Confidence 8888887 87643 2 56899999999999997765422 1 3331 2332 22 3689999999999998
No 111
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.96 E-value=0.0027 Score=65.15 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=86.7
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCcccCCCchh---HHHHhcCCceeeeccChH--
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSGAEWVEPLPKG---FLEMLDGRGCIVKWAPQQ-- 354 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~p~~-- 354 (470)
+..+++..|... ..+.+..+++|++.+ +.+++++- .+. ....+. ..++.++++.+....++.
T Consensus 295 ~~~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~~~lvi~G-~g~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 364 (476)
T cd03791 295 DAPLFGFVGRLT--EQKGIDLLLEALPELLELGGQLVILG-SGD-------PEYEEALRELAARYPGRVAVLIGYDEALA 364 (476)
T ss_pred CCCEEEEEeecc--ccccHHHHHHHHHHHHHcCcEEEEEe-cCC-------HHHHHHHHHHHHhCCCcEEEEEeCCHHHH
Confidence 345566677776 333455555665543 44444432 221 001111 222234666655333433
Q ss_pred -hhhccCCcceeeccc---Cc-hhhHHhhhcCCceecCCCccchhhhHHHHHhh-----hheeEEcCCcccHHHHHHHHH
Q 012151 355 -EVLAHPAVGGFWTHS---GW-NSTLESMCEGVPMICQPYLPDQMVNARYVSHF-----WRVGLHSEWKLERMEIERAIR 424 (470)
Q Consensus 355 -~lL~~~~~~~~I~HG---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~-----~G~G~~l~~~~~~~~l~~ai~ 424 (470)
.++..+++ ++.-. |. .+.+||+++|+|+|+....+ ....|.+. -|.|..++. -++++|.++|.
T Consensus 365 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg----~~e~v~~~~~~~~~~~G~~~~~-~~~~~l~~~i~ 437 (476)
T cd03791 365 HLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGG----LADTVIDYNEDTGEGTGFVFEG-YNADALLAALR 437 (476)
T ss_pred HHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCC----ccceEeCCcCCCCCCCeEEeCC-CCHHHHHHHHH
Confidence 36777777 77532 22 47899999999999865432 11222220 258888887 67899999999
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 425 RVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 425 ~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
++++.. .-++...++++...+ ..-+-.+.+++.++.++
T Consensus 438 ~~l~~~---~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 438 RALALY---RDPEAWRKLQRNAMA---QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHH---cCHHHHHHHHHHHhc---cCCChHHHHHHHHHHHh
Confidence 998641 112223333333322 22344555566655543
No 112
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.95 E-value=0.0035 Score=64.41 Aligned_cols=160 Identities=9% Similarity=0.054 Sum_probs=95.5
Q ss_pred EEEEEcCcccccCHHHHHHHHHHHHhC---CCCE-EEEEcCCCCCCCcccCCCchhHHHH---h--cCCceeeeccChHh
Q 012151 285 VVYISFGSVIAINKDGFLEIAWGVANS---RMPF-LWVVRPGLVSGAEWVEPLPKGFLEM---L--DGRGCIVKWAPQQE 355 (470)
Q Consensus 285 ~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~-i~~~~~~~~~~~~~~~~~p~~~~~~---~--~~~~~~~~~~p~~~ 355 (470)
.++++.|... +.+.+..+++|++.. ...+ +..++.+. ..+.+.+. . .+++.+.++.+..+
T Consensus 320 ~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~---------~~~~l~~~i~~~~l~~~V~f~G~~~~~~ 388 (500)
T TIGR02918 320 FSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGG---------EKQKLQKIINENQAQDYIHLKGHRNLSE 388 (500)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECch---------hHHHHHHHHHHcCCCCeEEEcCCCCHHH
Confidence 4556668875 445666677777543 1223 23343321 12222222 1 35677788888888
Q ss_pred hhccCCcceeecc---cC-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC---ccc----HHHHHHHHH
Q 012151 356 VLAHPAVGGFWTH---SG-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW---KLE----RMEIERAIR 424 (470)
Q Consensus 356 lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~---~~~----~~~l~~ai~ 424 (470)
++..+++ +|.- -| ..+++||+++|+|+|+.... ..+...++.. .-|..++. .-+ .++|+++|.
T Consensus 389 ~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~ 462 (500)
T TIGR02918 389 VYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIV 462 (500)
T ss_pred HHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHH
Confidence 9988888 7753 33 45899999999999995432 1344556563 56777652 122 788999999
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 425 RVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 425 ~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
+++++..-..+.+++++.++.+ +....++...+.+++
T Consensus 463 ~ll~~~~~~~~~~~a~~~a~~f--------s~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 463 EYFNSNDIDAFHEYSYQIAEGF--------LTANIIEKWKKLVRE 499 (500)
T ss_pred HHhChHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhh
Confidence 9996522234555555544443 344555555555544
No 113
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.94 E-value=0.00022 Score=71.07 Aligned_cols=171 Identities=17% Similarity=0.146 Sum_probs=92.3
Q ss_pred CCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHh------cCCceeeeccChH
Q 012151 281 TPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEML------DGRGCIVKWAPQQ 354 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~~~~~p~~ 354 (470)
+.+.++|.||.......++.+..-++-|++.+.-.+|....... + ..++.+.. ++++.+.++.|..
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-~-------~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-G-------EARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-H-------HHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-H-------HHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 56679999999999999999999999999999888888754321 0 12222222 2566777877766
Q ss_pred hhh---ccCCcceee---cccCchhhHHhhhcCCceecCCCcc-chhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHh
Q 012151 355 EVL---AHPAVGGFW---THSGWNSTLESMCEGVPMICQPYLP-DQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVM 427 (470)
Q Consensus 355 ~lL---~~~~~~~~I---~HGG~gs~~eal~~GvP~v~~P~~~-DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl 427 (470)
+-| ...++ ++ ..+|..|++|||+.|||+|.+|-.. =...-|..+.. +|+..-+-. +.++-.+.--++-
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~--s~~eYv~~Av~La 428 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD--SEEEYVEIAVRLA 428 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S--SHHHHHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC--CHHHHHHHHHHHh
Confidence 543 33554 43 5678899999999999999999543 33444566666 688755444 4455444444666
Q ss_pred ccchhHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 428 VEAEGQEMRARIM-HLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 428 ~~~~~~~~~~~a~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
+| +.++++.+ ++++.+.++ +-....+.+..+++.+++
T Consensus 429 ~D---~~~l~~lR~~Lr~~~~~S--pLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 429 TD---PERLRALRAKLRDRRSKS--PLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp H----HHHHHHHHHHHHHHHHHS--GGG-HHHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHH
Confidence 77 44433322 233333221 124455566666655543
No 114
>PLN02316 synthase/transferase
Probab=97.91 E-value=0.0038 Score=68.26 Aligned_cols=163 Identities=8% Similarity=-0.024 Sum_probs=88.4
Q ss_pred EEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCcccCCCch---hHHHH----hcCCceeeeccChH
Q 012151 285 VVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSGAEWVEPLPK---GFLEM----LDGRGCIVKWAPQQ 354 (470)
Q Consensus 285 ~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~~~~~~~~p~---~~~~~----~~~~~~~~~~~p~~ 354 (470)
.++...|-.. ..+.+..+++|+..+ +.++++ ++.+... .+-. .+.++ .++++.+....+..
T Consensus 841 plVg~VGRL~--~qKGvdlLi~Al~~ll~~~~qlVI-vG~Gpd~------~~e~~l~~La~~Lg~~~~~rV~f~g~~de~ 911 (1036)
T PLN02316 841 PLVGIITRLT--HQKGIHLIKHAIWRTLERNGQVVL-LGSAPDP------RIQNDFVNLANQLHSSHHDRARLCLTYDEP 911 (1036)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHhhcCcEEEE-EeCCCCH------HHHHHHHHHHHHhCccCCCeEEEEecCCHH
Confidence 3444556665 344566666776653 455544 4433110 0111 12222 23456665444443
Q ss_pred ---hhhccCCcceeeccc---C-chhhHHhhhcCCceecCCCccchhhhHHHHHh----------h--hheeEEcCCccc
Q 012151 355 ---EVLAHPAVGGFWTHS---G-WNSTLESMCEGVPMICQPYLPDQMVNARYVSH----------F--WRVGLHSEWKLE 415 (470)
Q Consensus 355 ---~lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~----------~--~G~G~~l~~~~~ 415 (470)
.+++.+++ |+.-+ | ..+.+||+++|+|.|+-...+ ....|.+ . -+-|...+. .+
T Consensus 912 lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGG----L~DtV~d~d~~~~~~~~~g~~~tGflf~~-~d 984 (1036)
T PLN02316 912 LSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGG----LFDTVFDVDHDKERAQAQGLEPNGFSFDG-AD 984 (1036)
T ss_pred HHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCC----cHhhccccccccccccccccCCceEEeCC-CC
Confidence 47877777 88543 2 358999999999888754432 1222211 0 146777776 68
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 416 RMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 416 ~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
++.|..+|.+++.+ |......+++..++.+...-+-.+.+++.++.++
T Consensus 985 ~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 985 AAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred HHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 89999999999985 2233333444444444333455555555554443
No 115
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.86 E-value=0.013 Score=58.61 Aligned_cols=154 Identities=10% Similarity=0.017 Sum_probs=82.5
Q ss_pred EEEEcCcccccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccC-h---HhhhccC
Q 012151 286 VYISFGSVIAINKDGFLEIAWGVANSRMPF-LWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAP-Q---QEVLAHP 360 (470)
Q Consensus 286 I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~-i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p-~---~~lL~~~ 360 (470)
+++..|.........+..+++|+...+.++ ++.++.+. ...+ +++...++.. + .++++.+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~-------~~~~--------~~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS-------PFTA--------GNVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC-------cccc--------cceEEecCcCCHHHHHHHHHhC
Confidence 334445432223344577888888875444 33343321 0011 2334445542 2 3356567
Q ss_pred Ccceeeccc----CchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHHHH
Q 012151 361 AVGGFWTHS----GWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMR 436 (470)
Q Consensus 361 ~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~ 436 (470)
++ ||.-+ -..++.||+++|+|+|+....+ ....+ .+ +-|..++. -+.++|+++++..+.+ ..+.
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~-~d~~~La~~~~~~~~~---~~~~ 375 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSE-EEVLQLAQLSKPEIAQ---AVFG 375 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECC-CCHHHHHhccCHHHHH---Hhhh
Confidence 76 77643 3568999999999999977654 22333 33 67888877 4778888754332222 1111
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 012151 437 ARIMHLKEKVDFCLRKGGSSHQSLERLIDHILSF 470 (470)
Q Consensus 437 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (470)
+.....++...+. -+...-+++.++.++++
T Consensus 376 ~~~~~~r~~~~~~----fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 376 TTLAEFSQRSRAA----YSGQQMLEEYVNFYQNL 405 (405)
T ss_pred hHHHHHHHHHHHh----CCHHHHHHHHHHHHHhC
Confidence 1111222232332 55667777777766553
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.84 E-value=0.0037 Score=64.11 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=59.8
Q ss_pred CCceeeeccChHhhhccCCcceeecc----cCchhhHHhhhcCCceecCCCccchhhhHHHHHhh----h-heeEEcCCc
Q 012151 343 GRGCIVKWAPQQEVLAHPAVGGFWTH----SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHF----W-RVGLHSEWK 413 (470)
Q Consensus 343 ~~~~~~~~~p~~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~----~-G~G~~l~~~ 413 (470)
+++.+.+.....+++..+++ +|.- |-..++.||+++|+|+|+- |.......+++. + ..|..++.
T Consensus 354 ~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~- 426 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP- 426 (475)
T ss_pred CeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC-
Confidence 67788886666778887887 6644 3356899999999999994 444455555551 0 26777776
Q ss_pred ccHHHHHHHHHHHhcc
Q 012151 414 LERMEIERAIRRVMVE 429 (470)
Q Consensus 414 ~~~~~l~~ai~~vl~~ 429 (470)
.+.++++++|.++++|
T Consensus 427 ~d~~~la~ai~~ll~~ 442 (475)
T cd03813 427 ADPEALARAILRLLKD 442 (475)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 6889999999999998
No 117
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00021 Score=57.33 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=71.4
Q ss_pred EEEEcCcccccCHHHHHHH-HHHHHhC-CCCEEEEEcCCCCCCCcccCCCc-hhHHHHhcCCceeeec--cC-hHhhhcc
Q 012151 286 VYISFGSVIAINKDGFLEI-AWGVANS-RMPFLWVVRPGLVSGAEWVEPLP-KGFLEMLDGRGCIVKW--AP-QQEVLAH 359 (470)
Q Consensus 286 I~vs~Gs~~~~~~~~~~~i-~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~--~p-~~~lL~~ 359 (470)
||||-||....-...+..+ ..-+.+. ..++|++++.+ +..| .++ ++.+| -+ .+.+...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~--------d~kpvagl--------~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG--------DIKPVAGL--------RVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC--------Cccccccc--------EEEeechHHHHHHHhhc
Confidence 7899999953111111111 2222333 45788888764 2233 222 45544 34 3446655
Q ss_pred CCcceeecccCchhhHHhhhcCCceecCCCcc--------chhhhHHHHHhhhheeEEcCC
Q 012151 360 PAVGGFWTHSGWNSTLESMCEGVPMICQPYLP--------DQMVNARYVSHFWRVGLHSEW 412 (470)
Q Consensus 360 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~rv~~~~G~G~~l~~ 412 (470)
+++ +|+|+|.||+..++..++|.+++|-.. .|-.-|..+++ ++.=+....
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp 123 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP 123 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC
Confidence 565 999999999999999999999999543 58888888988 688777765
No 118
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.73 E-value=0.00033 Score=60.97 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=85.4
Q ss_pred CCCeEEEEEcCcccccCHHHHHHHHHHHHhC----CCC-EEEEEcCCCCCCCcccCCCchhHHH--HhcCCceeeeccCh
Q 012151 281 TPKSVVYISFGSVIAINKDGFLEIAWGVANS----RMP-FLWVVRPGLVSGAEWVEPLPKGFLE--MLDGRGCIVKWAPQ 353 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~----~~~-~i~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~p~ 353 (470)
..++.+++..|.... ...+..+++++..+ ... .++.++... . ...+ ....+ ...+++.+.++.++
T Consensus 12 ~~~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~-~----~~~~-~~~~~~~~~~~~i~~~~~~~~ 83 (172)
T PF00534_consen 12 PDKKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE-Y----KKEL-KNLIEKLNLKENIIFLGYVPD 83 (172)
T ss_dssp -TTSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCC-H----HHHH-HHHHHHTTCGTTEEEEESHSH
T ss_pred CCCCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEcccc-c----cccc-ccccccccccccccccccccc
Confidence 345566677888764 34455555555542 233 344443110 0 0001 11111 13367788899883
Q ss_pred H---hhhccCCcceeecc----cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHH
Q 012151 354 Q---EVLAHPAVGGFWTH----SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRV 426 (470)
Q Consensus 354 ~---~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~v 426 (470)
. .++..+++ +|+. |...++.||+++|+|+|+ .+...+...+... +.|..++. -+.+++.++|.++
T Consensus 84 ~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~~-~~g~~~~~-~~~~~l~~~i~~~ 155 (172)
T PF00534_consen 84 DELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIINDG-VNGFLFDP-NDIEELADAIEKL 155 (172)
T ss_dssp HHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGTT-TSEEEEST-TSHHHHHHHHHHH
T ss_pred ccccccccccee--ccccccccccccccccccccccceee----ccccCCceeeccc-cceEEeCC-CCHHHHHHHHHHH
Confidence 3 37878887 8877 667799999999999998 5667777778884 77999988 4999999999999
Q ss_pred hcc
Q 012151 427 MVE 429 (470)
Q Consensus 427 l~~ 429 (470)
+++
T Consensus 156 l~~ 158 (172)
T PF00534_consen 156 LND 158 (172)
T ss_dssp HHH
T ss_pred HCC
Confidence 998
No 119
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.028 Score=54.17 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=108.6
Q ss_pred CCCeeeeccCCCCCCCCCCCCCccchhhhhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhC-----CCCEEEEE
Q 012151 245 SIPIFPIGPLHKCSPASSGSLSSQDYQRSISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANS-----RMPFLWVV 319 (470)
Q Consensus 245 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~-----~~~~i~~~ 319 (470)
+-+..|||--..+.- ...+.. +...+-+....+++++.+--||-...-......+.+|..++ +.++++-+
T Consensus 155 g~~~~yVGHpl~d~i----~~~~~r-~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~ 229 (381)
T COG0763 155 GLPCTYVGHPLADEI----PLLPDR-EAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPL 229 (381)
T ss_pred CCCeEEeCChhhhhc----cccccH-HHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 345999996554421 111222 22334444445677899999998762223333344444432 46676665
Q ss_pred cCCCCCCCcccCCCchhHHHHhcCCc-eeeecc-ChH--hhhccCCcceeecccCchhhHHhhhcCCceecCCC-ccchh
Q 012151 320 RPGLVSGAEWVEPLPKGFLEMLDGRG-CIVKWA-PQQ--EVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPY-LPDQM 394 (470)
Q Consensus 320 ~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~-p~~--~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~-~~DQ~ 394 (470)
..... +.+.... ...+. ...-++ ++. .++..+++ .+.-+|- -+.|+..+|+|||+.=- ..=-+
T Consensus 230 ~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~ 297 (381)
T COG0763 230 VNAKY------RRIIEEA---LKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITY 297 (381)
T ss_pred CcHHH------HHHHHHH---hhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHH
Confidence 33210 0011111 11111 122222 222 26666776 7777774 56899999999998421 11112
Q ss_pred hhHHHHHhhhhee------------EEcCC-cccHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 012151 395 VNARYVSHFWRVG------------LHSEW-KLERMEIERAIRRVMVEAE-GQEMRARIMHLKEKVDFCLRKGGSSHQSL 460 (470)
Q Consensus 395 ~na~rv~~~~G~G------------~~l~~-~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 460 (470)
..|+++.. +... ..+-. ..+++.|++++..++.|+. -+.+++...+|.+.++. +..+..++
T Consensus 298 ~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA 372 (381)
T COG0763 298 FIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAA 372 (381)
T ss_pred HHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHH
Confidence 23333333 1211 11111 5789999999999999831 12455566666666654 35888888
Q ss_pred HHHHHHHH
Q 012151 461 ERLIDHIL 468 (470)
Q Consensus 461 ~~~~~~l~ 468 (470)
+.+++.++
T Consensus 373 ~~vl~~~~ 380 (381)
T COG0763 373 QAVLELLL 380 (381)
T ss_pred HHHHHHhc
Confidence 88887764
No 120
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.50 E-value=0.082 Score=49.29 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=66.3
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCCC--CcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHhhcchHHHH
Q 012151 27 GHINPMLHLASILYSKGFSVTIIHTDFN--FSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAINGKCIMPFRD 104 (470)
Q Consensus 27 GH~~p~l~La~~L~~rGh~V~~~~~~~~--~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (470)
-|+.-+..|-++|.++||+|.+-+-+.. .+.... .||.+..+...-. .++.+.+..... -...|.+
T Consensus 11 ~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk~g~------~tl~~Kl~~~~e-R~~~L~k 78 (346)
T COG1817 11 PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL-----YGFPYKSIGKHGG------VTLKEKLLESAE-RVYKLSK 78 (346)
T ss_pred chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH-----hCCCeEeecccCC------ccHHHHHHHHHH-HHHHHHH
Confidence 5788899999999999999988665322 233333 7899998873210 112211111111 1122333
Q ss_pred HHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecc
Q 012151 105 CLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTC 152 (470)
Q Consensus 105 ~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~ 152 (470)
++.+ .+||+.+. -..+.+..+|..+|+|.|++.-.
T Consensus 79 i~~~------------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 79 IIAE------------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHhh------------cCCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 4444 49999999 56788999999999999998654
No 121
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.46 E-value=0.018 Score=56.81 Aligned_cols=82 Identities=12% Similarity=0.065 Sum_probs=58.8
Q ss_pred CCceeeeccChH-hhhccCCcceeecc--cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHH
Q 012151 343 GRGCIVKWAPQQ-EVLAHPAVGGFWTH--SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEI 419 (470)
Q Consensus 343 ~~~~~~~~~p~~-~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l 419 (470)
+++.+.++.++. .++..+++-.+.++ |...++.||+++|+|+|+..... .....++.. ..|..++. -+.+++
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-~d~~~l 335 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-GDIEAL 335 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-CcHHHH
Confidence 556666765544 48888888334443 33568999999999999954321 234556663 78888776 688999
Q ss_pred HHHHHHHhcc
Q 012151 420 ERAIRRVMVE 429 (470)
Q Consensus 420 ~~ai~~vl~~ 429 (470)
+++|.++++|
T Consensus 336 a~~i~~ll~~ 345 (372)
T cd04949 336 AEAIIELLND 345 (372)
T ss_pred HHHHHHHHcC
Confidence 9999999998
No 122
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.41 E-value=0.00099 Score=64.92 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=79.5
Q ss_pred cCCceeeeccChHhhh---ccCCcceeeccc-------C------chhhHHhhhcCCceecCCCccchhhhHHHHHhhhh
Q 012151 342 DGRGCIVKWAPQQEVL---AHPAVGGFWTHS-------G------WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWR 405 (470)
Q Consensus 342 ~~~~~~~~~~p~~~lL---~~~~~~~~I~HG-------G------~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G 405 (470)
.+|+.+.+|+|+.++. .. +.+++...- . -+-+.++|++|+|+|+ .++...+..|++. +
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~----~~~~~~~~~V~~~-~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV----WSKAAIADFIVEN-G 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEE----CCCccHHHHHHhC-C
Confidence 3677899999988754 33 433333221 1 1227778999999998 4567788999995 9
Q ss_pred eeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012151 406 VGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLID 465 (470)
Q Consensus 406 ~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
+|..++ +.+++.+++.++. +++...++++++++++++++. .-..+++++++.
T Consensus 280 ~G~~v~---~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~g----~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD---SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRNG----YFTKKALVDAIK 331 (333)
T ss_pred ceEEeC---CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHh
Confidence 999998 4578999998854 433467899999999999875 666677766654
No 123
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.26 E-value=0.0008 Score=55.90 Aligned_cols=80 Identities=23% Similarity=0.224 Sum_probs=49.2
Q ss_pred cCCceeeeccCh-HhhhccCCcceeecc---cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHH
Q 012151 342 DGRGCIVKWAPQ-QEVLAHPAVGGFWTH---SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERM 417 (470)
Q Consensus 342 ~~~~~~~~~~p~-~~lL~~~~~~~~I~H---GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 417 (470)
.+++.+.+|++. .+++..+++....+. |-.+++.|++++|+|+|+.+. .....++.. +.|..+. -+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~~--~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLVA--NDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-T--T-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEEC--CCHH
Confidence 468889999863 337888888444332 234899999999999999665 123344443 8888773 4899
Q ss_pred HHHHHHHHHhcc
Q 012151 418 EIERAIRRVMVE 429 (470)
Q Consensus 418 ~l~~ai~~vl~~ 429 (470)
++.++|+++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 124
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.69 E-value=0.0024 Score=49.43 Aligned_cols=62 Identities=11% Similarity=0.208 Sum_probs=48.2
Q ss_pred hhhhcCCCCCCeEEEEEcCccccc---CH--HHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhH
Q 012151 273 SISWLDKQTPKSVVYISFGSVIAI---NK--DGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGF 337 (470)
Q Consensus 273 l~~~l~~~~~~~~I~vs~Gs~~~~---~~--~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~ 337 (470)
+.+|+...+.++.|++|+||.... .. ..+..+++|++.++..+++.+....... .+.+|+|+
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~---lg~lP~nV 96 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAE---LGELPDNV 96 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGG---CCS-TTTE
T ss_pred CCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHh---hCCCCCCC
Confidence 778998888999999999999873 22 4788899999999999999997664332 34566654
No 125
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.68 E-value=0.053 Score=55.53 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=51.2
Q ss_pred CCceeeeccCh-HhhhccCCcceeecc---cC-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHH
Q 012151 343 GRGCIVKWAPQ-QEVLAHPAVGGFWTH---SG-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERM 417 (470)
Q Consensus 343 ~~~~~~~~~p~-~~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 417 (470)
+++.+.+|... ..+|..+++ ||.. -| .+++.||+++|+|+|+... ..+...+.+. ..|..++. -+.+
T Consensus 455 d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~-~D~~ 526 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD-AQTV 526 (578)
T ss_pred CcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC-CChh
Confidence 66788887543 347888888 8753 44 5699999999999998544 4566777774 78888876 3344
Q ss_pred HHHHHH
Q 012151 418 EIERAI 423 (470)
Q Consensus 418 ~l~~ai 423 (470)
.+.+++
T Consensus 527 aLa~ai 532 (578)
T PRK15490 527 NLDQAC 532 (578)
T ss_pred hHHHHH
Confidence 454444
No 126
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.045 Score=55.10 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=85.8
Q ss_pred CCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhc------CCceeeeccChH
Q 012151 281 TPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLD------GRGCIVKWAPQQ 354 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~------~~~~~~~~~p~~ 354 (470)
+++.+||+||+-.....++.+..-+.-++..+--++|..+++... .+...++.... +++++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~------~~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDA------EINARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcH------HHHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 567799999999999999999999999999999999988764211 12222222211 455666666644
Q ss_pred h---hhccCCcceeec---ccCchhhHHhhhcCCceecCCCccchhh--hH-HHHHhhhheeEEcCCcccHHHHHHHH
Q 012151 355 E---VLAHPAVGGFWT---HSGWNSTLESMCEGVPMICQPYLPDQMV--NA-RYVSHFWRVGLHSEWKLERMEIERAI 423 (470)
Q Consensus 355 ~---lL~~~~~~~~I~---HGG~gs~~eal~~GvP~v~~P~~~DQ~~--na-~rv~~~~G~G~~l~~~~~~~~l~~ai 423 (470)
+ -+.-+++ |.. =||..|+.|+|..|||+|..+ ++|+. |+ ..+.. +|+-..+-. -.++-++.+|
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~-agi~e~vA~-s~~dYV~~av 572 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATN-AGIPELVAD-SRADYVEKAV 572 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHh-cCCchhhcC-CHHHHHHHHH
Confidence 4 3444666 664 599999999999999999865 55553 22 23333 355444433 2334444444
No 127
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.60 E-value=0.023 Score=57.41 Aligned_cols=137 Identities=19% Similarity=0.214 Sum_probs=90.3
Q ss_pred CCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHH------hcCCceeeeccChH
Q 012151 281 TPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEM------LDGRGCIVKWAPQQ 354 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~p~~ 354 (470)
+.+.+||++|--....+|+.++.-++-|...+..++|....+-... .++... .++++.+.+-+...
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--------~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--------QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--------HHHHHHHHHhCCCccceeeccccchH
Confidence 4567999999988889999999999999999999999986553221 112111 12455555555544
Q ss_pred h-----hhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhH-HHHHhhhheeEEcCCcccHHHHHHHHHHHhc
Q 012151 355 E-----VLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNA-RYVSHFWRVGLHSEWKLERMEIERAIRRVMV 428 (470)
Q Consensus 355 ~-----lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na-~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~ 428 (470)
+ .|..-.++-+.++ |..|.++.|+.|||||.+|.-.--..-| -.+.. +|+|..+.+ +.++-.+.--++-+
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak--~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK--NREEYVQIAVRLAT 903 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh--hHHHHHHHHHHhhc
Confidence 3 2323333335554 6789999999999999999765433333 45566 799986655 44444333335555
Q ss_pred c
Q 012151 429 E 429 (470)
Q Consensus 429 ~ 429 (470)
|
T Consensus 904 d 904 (966)
T KOG4626|consen 904 D 904 (966)
T ss_pred C
Confidence 6
No 128
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.54 E-value=0.35 Score=43.25 Aligned_cols=48 Identities=27% Similarity=0.196 Sum_probs=34.5
Q ss_pred CCceeeeccChHh----hhccCCcceeecccC----chhhHHhhhcCCceecCCCccc
Q 012151 343 GRGCIVKWAPQQE----VLAHPAVGGFWTHSG----WNSTLESMCEGVPMICQPYLPD 392 (470)
Q Consensus 343 ~~~~~~~~~p~~~----lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~D 392 (470)
+|+.+.++++..+ ++..+++ +|+-.. .+++.||+++|+|+|+.+....
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 5567777753222 3333666 888776 7899999999999999876554
No 129
>PHA01633 putative glycosyl transferase group 1
Probab=96.53 E-value=0.021 Score=55.23 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=62.0
Q ss_pred cCCceee---eccChH---hhhccCCcceeeccc---C-chhhHHhhhcCCceecCCCc------cch------hhhHHH
Q 012151 342 DGRGCIV---KWAPQQ---EVLAHPAVGGFWTHS---G-WNSTLESMCEGVPMICQPYL------PDQ------MVNARY 399 (470)
Q Consensus 342 ~~~~~~~---~~~p~~---~lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~------~DQ------~~na~r 399 (470)
++++.+. +++++. ++++.+++ ||.-+ | ..++.||+++|+|+|+--.. +|+ .++..-
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4566777 445554 46777887 88643 4 45789999999999986332 232 233322
Q ss_pred HH--hhhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 012151 400 VS--HFWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKV 446 (470)
Q Consensus 400 v~--~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~ 446 (470)
.. .+ |.|...+. .++++++++|.+++...+-+....++++.++++
T Consensus 278 ~~~~~~-g~g~~~~~-~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 278 YYDKEH-GQKWKIHK-FQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred hcCccc-CceeeecC-CCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 22 33 67767666 799999999999955321122333444444443
No 130
>PHA01630 putative group 1 glycosyl transferase
Probab=96.28 E-value=0.14 Score=49.66 Aligned_cols=113 Identities=6% Similarity=0.062 Sum_probs=65.9
Q ss_pred eccChHh---hhccCCcceeec---ccC-chhhHHhhhcCCceecCCCcc--chh---hhHHHHHh-----------hhh
Q 012151 349 KWAPQQE---VLAHPAVGGFWT---HSG-WNSTLESMCEGVPMICQPYLP--DQM---VNARYVSH-----------FWR 405 (470)
Q Consensus 349 ~~~p~~~---lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~--DQ~---~na~rv~~-----------~~G 405 (470)
.++|+.+ ++..+++ ++. ..| ..++.||+++|+|+|+.-..+ |.- .|+..+.. . +
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 3466555 6777887 653 232 558999999999999976433 211 11111110 1 2
Q ss_pred eeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 012151 406 VGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILSF 470 (470)
Q Consensus 406 ~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (470)
+|..++. +.+++.+++.+++.|.+-+.++++.+.-++...+. -+....++++++.++++
T Consensus 273 ~G~~v~~--~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~----fs~~~ia~k~~~l~~~~ 331 (331)
T PHA01630 273 VGYFLDP--DIEDAYQKLLEALANWTPEKKKENLEGRAILYREN----YSYNAIAKMWEKILEKY 331 (331)
T ss_pred cccccCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcC
Confidence 4544444 66888888888887621123444444444444443 66667777787777653
No 131
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.08 E-value=0.052 Score=41.62 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=52.8
Q ss_pred ccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhh-eeEEcCCcccHHHHHHHHHHHhccchhHH-HHHHHHHHHHH
Q 012151 368 HSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWR-VGLHSEWKLERMEIERAIRRVMVEAEGQE-MRARIMHLKEK 445 (470)
Q Consensus 368 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~l~~ai~~vl~~~~~~~-~~~~a~~l~~~ 445 (470)
+|-..-+.|++++|+|+|+-.. ......+.. | -++..+ +.+++.++|+.+++| +. .++-+++-.+.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~---~~~el~~~i~~ll~~---~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN---DPEELAEKIEYLLEN---PEERRRIAKNARER 76 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC---CHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
Confidence 5556789999999999999654 333333333 3 333333 889999999999998 43 33333334444
Q ss_pred HHHHHhcCCChHHHHHHHH
Q 012151 446 VDFCLRKGGSSHQSLERLI 464 (470)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~ 464 (470)
+++ .-+....++.|+
T Consensus 77 v~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 77 VLK----RHTWEHRAEQIL 91 (92)
T ss_pred HHH----hCCHHHHHHHHH
Confidence 443 377777777665
No 132
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.05 E-value=0.21 Score=50.16 Aligned_cols=178 Identities=12% Similarity=0.155 Sum_probs=99.6
Q ss_pred hhcCCCCCCeEEEEEcCcccc----------cCHHHHHHHHHHHHhCCCCEEEEEcCCCCC--CCcccCCCchhHHHHhc
Q 012151 275 SWLDKQTPKSVVYISFGSVIA----------INKDGFLEIAWGVANSRMPFLWVVRPGLVS--GAEWVEPLPKGFLEMLD 342 (470)
Q Consensus 275 ~~l~~~~~~~~I~vs~Gs~~~----------~~~~~~~~i~~al~~~~~~~i~~~~~~~~~--~~~~~~~~p~~~~~~~~ 342 (470)
.|+.....+++|-+|.-.... ...+.+..+++.+.+.+.++++........ ..+ ....-..+.+.++
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~d-D~~~~~~l~~~~~ 304 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKD-DRMVALNLRQHVS 304 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCc-hHHHHHHHHHhcc
Confidence 455433345677777543321 112334445555555588877664321110 000 0001123334433
Q ss_pred C--Cceee--eccChH--hhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEE-cCC-cc
Q 012151 343 G--RGCIV--KWAPQQ--EVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLH-SEW-KL 414 (470)
Q Consensus 343 ~--~~~~~--~~~p~~--~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~-l~~-~~ 414 (470)
. +..++ ++-+.+ .+++++++ +|..= .=++.-|+..|||++.+++. +-....++. +|.... .+. .+
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y~---~K~~~~~~~-lg~~~~~~~~~~l 377 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINYE---HKSAGIMQQ-LGLPEMAIDIRHL 377 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeeeh---HHHHHHHHH-cCCccEEechhhC
Confidence 2 23333 333433 57777765 77532 33466789999999999993 344445577 788766 444 78
Q ss_pred cHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 415 ERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 415 ~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
+.++|.+.+.++++|. +.++++.++--++++.. +.+.+.++++.+-
T Consensus 378 ~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~ 423 (426)
T PRK10017 378 LDGSLQAMVADTLGQL--PALNARLAEAVSRERQT------GMQMVQSVLERIG 423 (426)
T ss_pred CHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhc
Confidence 9999999999999985 45666666555555542 4455555655543
No 133
>PRK14098 glycogen synthase; Provisional
Probab=96.00 E-value=0.068 Score=54.92 Aligned_cols=134 Identities=7% Similarity=-0.091 Sum_probs=76.1
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChH---hhh
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQ---EVL 357 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~---~lL 357 (470)
..++...|.... .+.+..+++|+..+ +.++++ ++.+...- .+.+ ..+.++.++++.+....+.. .++
T Consensus 307 ~~~i~~vgRl~~--~KG~d~li~a~~~l~~~~~~lvi-vG~G~~~~---~~~l-~~l~~~~~~~V~~~g~~~~~~~~~~~ 379 (489)
T PRK14098 307 TPLVGVIINFDD--FQGAELLAESLEKLVELDIQLVI-CGSGDKEY---EKRF-QDFAEEHPEQVSVQTEFTDAFFHLAI 379 (489)
T ss_pred CCEEEEeccccc--cCcHHHHHHHHHHHHhcCcEEEE-EeCCCHHH---HHHH-HHHHHHCCCCEEEEEecCHHHHHHHH
Confidence 345566676653 33455555555543 444433 33321000 0001 22333446778888888765 478
Q ss_pred ccCCcceeeccc---Cc-hhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhc
Q 012151 358 AHPAVGGFWTHS---GW-NSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMV 428 (470)
Q Consensus 358 ~~~~~~~~I~HG---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~ 428 (470)
+.+++ |+.-+ |. .+.+||+++|+|.|+....+-...-....++. +.|...+. -++++|+++|.++++
T Consensus 380 a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~~-~d~~~la~ai~~~l~ 450 (489)
T PRK14098 380 AGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFHD-YTPEALVAKLGEALA 450 (489)
T ss_pred HhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeCC-CCHHHHHHHHHHHHH
Confidence 77887 77543 22 37789999999888866533111000111233 67877776 678999999998763
No 134
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.94 E-value=0.083 Score=43.90 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=62.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHh
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAING 96 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (470)
+|++++.....| ...+++.|.++||+|++++......... ...++.+..++... .....++. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~----~~~~i~~~~~~~~~-------k~~~~~~~-~-- 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYE----IIEGIKVIRLPSPR-------KSPLNYIK-Y-- 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhh----HhCCeEEEEecCCC-------CccHHHHH-H--
Confidence 467777666555 5678999999999999999955432322 23788888885221 11112221 1
Q ss_pred hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCcc---chHHHHhhcC-CCeEEE
Q 012151 97 KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWF---FTHTVAADFK-LPTIVL 149 (470)
Q Consensus 97 ~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~---~~~~vA~~~g-iP~v~~ 149 (470)
. . +.++..+ .+||+|.+..... .+..++...+ +|+|.-
T Consensus 64 --~-~----l~k~ik~--------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 64 --F-R----LRKIIKK--------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred --H-H----HHHHhcc--------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 1 2 2333222 4899998775443 2445667888 888863
No 135
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.90 E-value=0.5 Score=45.62 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=43.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCcccccccCCCCCee-EEecC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSK--GFSVTIIHTDFNFSSTNYFSCNYPHFD-FHSFP 74 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~gi~-~~~~~ 74 (470)
||+++-....|++.-+.++.+.|+++ +.+|++++.+.+....+ ..+.++ ++.++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~----~~p~vd~v~~~~ 57 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR----LHPAVDEVIPVA 57 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh----cCCCccEEEEec
Confidence 58999999999999999999999997 89999999987776665 335564 44443
No 136
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.80 E-value=0.94 Score=44.33 Aligned_cols=103 Identities=10% Similarity=0.008 Sum_probs=70.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCcccccccCCCCCeeEEe-cCCCCCCCcccccCHHHHHH
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSK--GFSVTIIHTDFNFSSTNYFSCNYPHFDFHS-FPDGFSETEASVEDVAVFFT 92 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~gi~~~~-~~~~~~~~~~~~~~~~~~~~ 92 (470)
||||++-..+.|++.-+.++.+.|+++ +.+|++++.+......+ ..+.++.+- ++.. .. ... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~----~~P~vd~vi~~~~~--~~------~~~-~- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLS----RMPEVNEAIPMPLG--HG------ALE-I- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHh----cCCccCEEEecccc--cc------hhh-h-
Confidence 479999999999999999999999986 89999999987777666 335555433 2211 00 000 0
Q ss_pred HHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEE
Q 012151 93 AINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIV 148 (470)
Q Consensus 93 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~ 148 (470)
..+..+++++.+ .++|++|.=....-...++...|+|.-+
T Consensus 67 -------~~~~~l~~~lr~---------~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 -------GERRRLGHSLRE---------KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -------HHHHHHHHHHHh---------cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112234555654 4899999765556667778888888665
No 137
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=95.15 E-value=0.17 Score=51.40 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=72.1
Q ss_pred eccChHh---hhccCCcceeecc---cCch-hhHHhhhcCCc----eecCCCccchhhhHHHHHhhhheeEEcCCcccHH
Q 012151 349 KWAPQQE---VLAHPAVGGFWTH---SGWN-STLESMCEGVP----MICQPYLPDQMVNARYVSHFWRVGLHSEWKLERM 417 (470)
Q Consensus 349 ~~~p~~~---lL~~~~~~~~I~H---GG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 417 (470)
..+++.+ ++..+++ ++.- =|+| +..||+++|+| +|+--+.+-. . . ++-|+.++. .+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~---~-l~~gllVnP-~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----Q---E-LNGALLVNP-YDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----H---H-hCCcEEECC-CCHH
Confidence 4556665 5667777 7753 3644 78899999999 6664444322 2 1 234666666 6889
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 418 EIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 418 ~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
+++++|.++++... ++.+++.+++.+.+.+ .+...-++.++++|.+
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhC
Confidence 99999999998422 4566667777777655 7888889998888753
No 138
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.05 E-value=0.047 Score=46.09 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHhhcchHHHHHHHHHH
Q 012151 31 PMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAINGKCIMPFRDCLAEIL 110 (470)
Q Consensus 31 p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 110 (470)
-+..|+++|.++||+|+++++......... ...++.+..++-..... ......+. ..+...+ ..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~l-~~- 69 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEE---EEDGVRVHRLPLPRRPW---PLRLLRFL--------RRLRRLL-AA- 69 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SE---EETTEEEEEE--S-SSS---GGGHCCHH--------HHHHHHC-HH-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccc---ccCCceEEeccCCccch---hhhhHHHH--------HHHHHHH-hh-
Confidence 467899999999999999998655443221 23678888776221111 00011111 1112222 11
Q ss_pred hcccCCCCCCCCCcEEEeCCCc-cchHHHHh-hcCCCeEEEe
Q 012151 111 MKSKADQNKDSSPCCLITDAFW-FFTHTVAA-DFKLPTIVLQ 150 (470)
Q Consensus 111 ~~~~~~~~~~~~pDlvi~D~~~-~~~~~vA~-~~giP~v~~~ 150 (470)
.. .+||+|.+.... .....++. ..++|+|.-.
T Consensus 70 ~~--------~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 70 RR--------ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp CT-----------SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred hc--------cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 11 499999987633 22233444 8899998843
No 139
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.91 E-value=2.8 Score=40.70 Aligned_cols=102 Identities=9% Similarity=0.045 Sum_probs=67.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCcccccccCCCCCeeEE-ecCCCCCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSK--GFSVTIIHTDFNFSSTNYFSCNYPHFDFH-SFPDGFSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~gi~~~-~~~~~~~~~~~~~~~~~~~~~~ 93 (470)
|||++-..+.|++.-+.++.+.|++. +.+|++++.+...+..+ ..+.++-+ .++.. .. ...+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~----~~p~id~v~~~~~~--~~------~~~~--- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLE----RMPEIRQAIDMPLG--HG------ALEL--- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHh----cCchhceeeecCCc--cc------chhh---
Confidence 58999999999999999999999886 89999999877666655 33444332 22211 00 0000
Q ss_pred HHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEE
Q 012151 94 INGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIV 148 (470)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~ 148 (470)
.....+++++.+ .++|++|.-........++...++|.-+
T Consensus 66 ------~~~~~~~~~lr~---------~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 ------TERRRLGRSLRE---------ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ------hHHHHHHHHHhh---------cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 011234455544 4899999876566667777777888654
No 140
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.85 E-value=1.3 Score=43.30 Aligned_cols=105 Identities=7% Similarity=0.057 Sum_probs=69.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCcccccccCCCCCee-EEecCCCCCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSK--GFSVTIIHTDFNFSSTNYFSCNYPHFD-FHSFPDGFSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (470)
|||++-..+.|++.-+.++.+.|+++ +.+|++++.+.+.+..+ ..+.+. ++.++..... .... .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~----~~p~vd~vi~~~~~~~~-----~~~~----~ 67 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILS----ENPDINALYGLDRKKAK-----AGER----K 67 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHh----cCCCccEEEEeChhhhc-----chHH----H
Confidence 58999999999999999999999886 78999999987776665 335554 3334311100 0000 0
Q ss_pred HHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEE
Q 012151 94 INGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIV 148 (470)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~ 148 (470)
+. .+..++.++.. .++|++|.-.....+..++...|.|.-+
T Consensus 68 ~~-----~~~~l~~~lr~---------~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 68 LA-----NQFHLIKVLRA---------NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HH-----HHHHHHHHHHh---------CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11 11234455544 4899999665456677888888999765
No 141
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.69 E-value=0.48 Score=45.41 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=33.3
Q ss_pred ChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCcc
Q 012151 352 PQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLP 391 (470)
Q Consensus 352 p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~ 391 (470)
|+...|+.++. .|||---.+-+.||+..|+|+.+++...
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 67888988876 4667667888999999999999999886
No 142
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.64 E-value=0.28 Score=43.50 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=31.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
||||+.-=-+. +---+..|+++|.+.||+|+++.|...++-..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g 43 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTG 43 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTST
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcc
Confidence 56777665554 55568899999977789999999976665543
No 143
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.62 E-value=0.36 Score=41.67 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=55.6
Q ss_pred hCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHhhcchHHHHHHHHHHhcccCCCCCC
Q 012151 41 SKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAINGKCIMPFRDCLAEILMKSKADQNKD 120 (470)
Q Consensus 41 ~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 120 (470)
++||+|++++....... . .|++...+...-..... ..-....++...... ..+...+.+|+++.
T Consensus 1 q~gh~v~fl~~~~~~~~-~------~GV~~~~y~~~~~~~~~-~~~~~~~~e~~~~rg-~av~~a~~~L~~~G------- 64 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI-P------PGVRVVRYRPPRGPTPG-THPYVRDFEAAVLRG-QAVARAARQLRAQG------- 64 (171)
T ss_pred CCCCEEEEEecCCCCCC-C------CCcEEEEeCCCCCCCCC-CCcccccHHHHHHHH-HHHHHHHHHHHHcC-------
Confidence 47999999995333332 1 47888887531111100 000111121111111 22333456676663
Q ss_pred CCCcEEEeCCCccchHHHHhhc-CCCeEEEe
Q 012151 121 SSPCCLITDAFWFFTHTVAADF-KLPTIVLQ 150 (470)
Q Consensus 121 ~~pDlvi~D~~~~~~~~vA~~~-giP~v~~~ 150 (470)
+.||+|+....+..+..+-+.+ ++|.+.+.
T Consensus 65 f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 7999999999888889999999 99998853
No 144
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.12 E-value=3.5 Score=40.13 Aligned_cols=105 Identities=11% Similarity=0.002 Sum_probs=71.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHH
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKG--FSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTA 93 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (470)
++|+++-....|++.-.+++-+.|+++. .++++++...+.+... ..+.++-+..-.. .. ..
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~----~~p~I~~vi~~~~--~~----~~------- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILK----LNPEIDKVIIIDK--KK----KG------- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHh----cChHhhhhccccc--cc----cc-------
Confidence 5799999999999999999999999984 9999999987777665 2233333322111 00 00
Q ss_pred HHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEE
Q 012151 94 INGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVL 149 (470)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~ 149 (470)
........+.+.+.+ .++|+||.=...+-...++...++|.-.-
T Consensus 65 ---~~~~~~~~l~~~lr~---------~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 65 ---LGLKERLALLRTLRK---------ERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred ---cchHHHHHHHHHhhc---------cCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 111223334555544 37999998876777778888888887763
No 145
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=93.78 E-value=0.85 Score=46.54 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=63.8
Q ss_pred eccChHh---hhccCCcceeec---ccCch-hhHHhhhcCCc----eecCCCccchhhhHHHHHhhhheeEEcCCcccHH
Q 012151 349 KWAPQQE---VLAHPAVGGFWT---HSGWN-STLESMCEGVP----MICQPYLPDQMVNARYVSHFWRVGLHSEWKLERM 417 (470)
Q Consensus 349 ~~~p~~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 417 (470)
+++++.+ ++..+++ ||. +-|+| ++.||+++|+| +|+--..+ ... . ..-|..++. .+.+
T Consensus 347 g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~~~------~-~~~g~lv~p-~d~~ 415 (460)
T cd03788 347 RSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-AAE------E-LSGALLVNP-YDID 415 (460)
T ss_pred CCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-chh------h-cCCCEEECC-CCHH
Confidence 6677766 5767777 764 34544 77999999999 54432222 111 1 133556666 5789
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012151 418 EIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHI 467 (470)
Q Consensus 418 ~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 467 (470)
+++++|.+++++.. +..+++.++..+.+.+ -+...-++.++++|
T Consensus 416 ~la~ai~~~l~~~~-~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 416 EVADAIHRALTMPL-EERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 99999999998621 2333344444444433 67777788877765
No 146
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.66 E-value=5.3 Score=37.57 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=65.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCCcccccccCCCCCeeEE-ecCCCCCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKG--FSVTIIHTDFNFSSTNYFSCNYPHFDFH-SFPDGFSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~~~~~~~~~~~~gi~~~-~~~~~~~~~~~~~~~~~~~~~~ 93 (470)
|||++-..+.|++.-+.++.++|+++. -+|++++.+......+. .+.++-+ .++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~----~p~id~v~~~~~~~-----~~~~~------ 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL----MPEVDRVIVLPKKH-----GKLGL------ 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc----CCccCEEEEcCCcc-----cccch------
Confidence 589999999999999999999999974 89999999877666652 2444332 222110 00011
Q ss_pred HHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEE
Q 012151 94 INGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIV 148 (470)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~ 148 (470)
..+..++.++.. .++|+++.-........++...+++...
T Consensus 66 ------~~~~~~~~~l~~---------~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 ------GARRRLARALRR---------RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ------HHHHHHHHHHhh---------cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 122234455544 3899998776555555566666666554
No 147
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=93.17 E-value=9.2 Score=37.43 Aligned_cols=106 Identities=8% Similarity=0.082 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCcccccccCCCCCeeE-EecCCCCCCCcccccCHHHHH
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSK--GFSVTIIHTDFNFSSTNYFSCNYPHFDF-HSFPDGFSETEASVEDVAVFF 91 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~gi~~-~~~~~~~~~~~~~~~~~~~~~ 91 (470)
.++||++-....|++.-+.++.+.|+++ +.+|++++.+.+.+..+ ..+.++- +.++.. . ......+
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~----~~P~id~vi~~~~~-~------~~~~~~~ 73 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILS----ENPEINALYGIKNK-K------AGASEKI 73 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhc----cCCCceEEEEeccc-c------ccHHHHH
Confidence 4589999999999999999999999987 89999999987777665 3355543 233311 0 0000001
Q ss_pred HHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEE
Q 012151 92 TAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIV 148 (470)
Q Consensus 92 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~ 148 (470)
..+..+++++.+ .++|++|.-........++...+.|..+
T Consensus 74 --------~~~~~l~~~lr~---------~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 74 --------KNFFSLIKVLRA---------NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred --------HHHHHHHHHHhh---------CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 112234555654 4899999665445556677777887755
No 148
>PLN02939 transferase, transferring glycosyl groups
Probab=93.04 E-value=2.1 Score=46.87 Aligned_cols=134 Identities=12% Similarity=0.110 Sum_probs=74.2
Q ss_pred EEEEEcCcccccCHHHHHHHHHHHHh---CCCCEEEEEcCCCCCCCcccCCCchhHHHHh--cCCceeeeccChH---hh
Q 012151 285 VVYISFGSVIAINKDGFLEIAWGVAN---SRMPFLWVVRPGLVSGAEWVEPLPKGFLEML--DGRGCIVKWAPQQ---EV 356 (470)
Q Consensus 285 ~I~vs~Gs~~~~~~~~~~~i~~al~~---~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~p~~---~l 356 (470)
+++...|... +.+.+..+++|+.. .+.++++ ++.+.... ....-..+.++. .+++.+..+.+.. .+
T Consensus 780 pLIg~VGRL~--~QKGiDlLleA~~~Ll~~dvqLVI-vGdGp~~~---~e~eL~~La~~l~l~drV~FlG~~de~lah~I 853 (977)
T PLN02939 780 PLVGCITRLV--PQKGVHLIRHAIYKTAELGGQFVL-LGSSPVPH---IQREFEGIADQFQSNNNIRLILKYDEALSHSI 853 (977)
T ss_pred eEEEEeecCC--cccChHHHHHHHHHHhhcCCEEEE-EeCCCcHH---HHHHHHHHHHHcCCCCeEEEEeccCHHHHHHH
Confidence 4555566665 33445556666654 2444433 33321000 000001222233 2567777777764 47
Q ss_pred hccCCcceeeccc---C-chhhHHhhhcCCceecCCCcc--chhh--hHHHH-HhhhheeEEcCCcccHHHHHHHHHHHh
Q 012151 357 LAHPAVGGFWTHS---G-WNSTLESMCEGVPMICQPYLP--DQMV--NARYV-SHFWRVGLHSEWKLERMEIERAIRRVM 427 (470)
Q Consensus 357 L~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~--DQ~~--na~rv-~~~~G~G~~l~~~~~~~~l~~ai~~vl 427 (470)
++.+++ ||.-+ | ..+.+||+++|+|.|+....+ |--. +...+ ++. +-|...+. -+++.|+.+|.+++
T Consensus 854 YAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf~~-~D~eaLa~AL~rAL 929 (977)
T PLN02939 854 YAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTFLT-PDEQGLNSALERAF 929 (977)
T ss_pred HHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEecC-CCHHHHHHHHHHHH
Confidence 878887 88642 2 358999999999999866543 2111 01111 222 56766666 58889999998877
Q ss_pred c
Q 012151 428 V 428 (470)
Q Consensus 428 ~ 428 (470)
.
T Consensus 930 ~ 930 (977)
T PLN02939 930 N 930 (977)
T ss_pred H
Confidence 5
No 149
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=92.66 E-value=1.3 Score=48.33 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=65.3
Q ss_pred hhhccCCcceeeccc---Cch-hhHHhhhcCCc---eecCCCccchhhhHHHHHhhhh-eeEEcCCcccHHHHHHHHHHH
Q 012151 355 EVLAHPAVGGFWTHS---GWN-STLESMCEGVP---MICQPYLPDQMVNARYVSHFWR-VGLHSEWKLERMEIERAIRRV 426 (470)
Q Consensus 355 ~lL~~~~~~~~I~HG---G~g-s~~eal~~GvP---~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~l~~ai~~v 426 (470)
+++..+++ |+.-. |+| +..|++++|+| ++++.-. -..+.. +| -|+.+++ .+.++++++|.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~~----l~~~allVnP-~D~~~lA~AI~~a 440 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQS----LGAGALLVNP-WNITEVSSAIKEA 440 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchhh----hcCCeEEECC-CCHHHHHHHHHHH
Confidence 47777887 77554 776 67799999999 4444322 222221 23 4777777 7889999999999
Q ss_pred hc-cchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 427 MV-EAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 427 l~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
|+ +. +..+++.+++.+.++. .....-++.+++.|++
T Consensus 441 L~m~~--~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 441 LNMSD--EERETRHRHNFQYVKT-----HSAQKWADDFMSELND 477 (797)
T ss_pred HhCCH--HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHH
Confidence 98 41 3445556666666655 5666777777776653
No 150
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.48 E-value=7.9 Score=36.54 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=53.1
Q ss_pred CCceeeeccC---hHhhhccCCcceeecc---cCch-hhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCccc
Q 012151 343 GRGCIVKWAP---QQEVLAHPAVGGFWTH---SGWN-STLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLE 415 (470)
Q Consensus 343 ~~~~~~~~~p---~~~lL~~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 415 (470)
+++.+..+++ ...++..+++ ++.. .|.| ++.||+++|+|+|.. +.......+.. -+.|. +....+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~----~~~~~~e~~~~-~~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIAS----DVGGIPEVVED-GETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEEC----CCCChHHHhcC-CCceE-ecCCCC
Confidence 5567778888 3336666666 6666 3554 459999999999774 44444444555 23466 433136
Q ss_pred HHHHHHHHHHHhcc
Q 012151 416 RMEIERAIRRVMVE 429 (470)
Q Consensus 416 ~~~l~~ai~~vl~~ 429 (470)
.+++..++..++++
T Consensus 329 ~~~~~~~i~~~~~~ 342 (381)
T COG0438 329 VEELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999998
No 151
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.12 E-value=0.9 Score=39.33 Aligned_cols=115 Identities=13% Similarity=0.093 Sum_probs=58.1
Q ss_pred EEEcCCCccChHHHHHHHHHH-HhC-CCeEEEEeCCCCCccc--ccccCC-CCCeeEEecCCCCCCCcccccCHHHHHHH
Q 012151 19 ILFPLPFQGHINPMLHLASIL-YSK-GFSVTIIHTDFNFSST--NYFSCN-YPHFDFHSFPDGFSETEASVEDVAVFFTA 93 (470)
Q Consensus 19 l~~~~~~~GH~~p~l~La~~L-~~r-Gh~V~~~~~~~~~~~~--~~~~~~-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (470)
+++..+| ||+.=|+.|.+.+ .++ .++..+++.....+.. ..+... ....++..+|...........+....+..
T Consensus 2 l~v~gsG-GHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~ 80 (170)
T PF08660_consen 2 LVVLGSG-GHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRA 80 (170)
T ss_pred EEEEcCc-HHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHH
Confidence 4455444 9999999999999 334 4555556554433322 111001 01113444442211111111111111111
Q ss_pred HHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCcc--chHHHHhhc------CCCeEEEec
Q 012151 94 INGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWF--FTHTVAADF------KLPTIVLQT 151 (470)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~--~~~~vA~~~------giP~v~~~~ 151 (470)
+ + ..+.-+.. .+||+||+..-.. ....+|..+ |.++|.+-+
T Consensus 81 ~-------~-~~~~il~r---------~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 81 F-------L-QSLRILRR---------ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred H-------H-HHHHHHHH---------hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 1 1 11222222 3899999996554 356778888 999998754
No 152
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=92.10 E-value=4.2 Score=37.66 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSST 58 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 58 (470)
++||||+.-=-+. |---+.+|+++|.+.| +|+++.|...++-.
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 46 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGM 46 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCC
Confidence 3678887665543 4456888999998888 79999997655544
No 153
>PRK14099 glycogen synthase; Provisional
Probab=91.51 E-value=2.3 Score=43.68 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCC------ccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 14 NGRRVILFPLPF------QGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 14 ~~~~il~~~~~~------~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
++|+|++++.-. .|=-.-.-+|.++|+++||+|.+++|.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 368899887532 133344678889999999999999994
No 154
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.21 E-value=2.3 Score=36.24 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=23.7
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCCCCcc
Q 012151 27 GHINPMLHLASILYSKGFSVTIIHTDFNFSS 57 (470)
Q Consensus 27 GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 57 (470)
|=-.-+..|+++|+++||+|+++++......
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~ 43 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKDPI 43 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TTS-
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCccc
Confidence 6667789999999999999999988544443
No 155
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.81 E-value=0.49 Score=44.04 Aligned_cols=111 Identities=12% Similarity=0.116 Sum_probs=64.7
Q ss_pred CCceee-eccChHhhhccCCcceeecccCchhhH-HhhhcCCceecCCCccchhhhH--HHHHhhhheeEEcCCcccHHH
Q 012151 343 GRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTL-ESMCEGVPMICQPYLPDQMVNA--RYVSHFWRVGLHSEWKLERME 418 (470)
Q Consensus 343 ~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~-eal~~GvP~v~~P~~~DQ~~na--~rv~~~~G~G~~l~~~~~~~~ 418 (470)
+|..+. .|-.+.++|-++++ .|-- .||.. +++-.|+|+|.+|-.+-|+.-. .|-.+-+|+.+.+-. -.+..
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~ 368 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQA 368 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-Cchhh
Confidence 344433 55555556655554 3333 33433 4578899999999999997655 444444677766655 23333
Q ss_pred HHHHHHHHhccchhHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 419 IERAIRRVMVEAEGQEMRARIMH-LKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 419 l~~ai~~vl~~~~~~~~~~~a~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
-..+..+++.| +++..++++ =++++-+. | ++..|-+.+.+
T Consensus 369 a~~~~q~ll~d---p~r~~air~nGqrRiGqa----G----aa~rIAe~l~e 409 (412)
T COG4370 369 AAQAVQELLGD---PQRLTAIRHNGQRRIGQA----G----AARRIAEELGE 409 (412)
T ss_pred HHHHHHHHhcC---hHHHHHHHhcchhhccCc----c----hHHHHHHHHHH
Confidence 33444449999 887776662 33333332 3 55555555554
No 156
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=90.23 E-value=8 Score=35.78 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=27.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSST 58 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 58 (470)
||||+.-=-+. |---+.+|+++|.+ +|+|+++.|...++-.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~ 41 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSAS 41 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 45666544433 33348889999964 7899999997665543
No 157
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.93 E-value=2.6 Score=43.65 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=54.7
Q ss_pred CCceeeeccCh---HhhhccCCcceeeccc---CchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccH
Q 012151 343 GRGCIVKWAPQ---QEVLAHPAVGGFWTHS---GWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLER 416 (470)
Q Consensus 343 ~~~~~~~~~p~---~~lL~~~~~~~~I~HG---G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 416 (470)
+++.+.++.+. ..++..+.+ +|.=+ |.++.+||+.+|+|+| .+.....|+. ..=|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEe---CCH
Confidence 45666677763 336766666 88776 6789999999999999 4444556666 3666555 267
Q ss_pred HHHHHHHHHHhcc
Q 012151 417 MEIERAIRRVMVE 429 (470)
Q Consensus 417 ~~l~~ai~~vl~~ 429 (470)
.+|.++|..+|++
T Consensus 476 ~~l~~al~~~L~~ 488 (519)
T TIGR03713 476 SELLKALDYYLDN 488 (519)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999998
No 158
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=89.73 E-value=9.1 Score=35.26 Aligned_cols=42 Identities=21% Similarity=0.109 Sum_probs=28.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
||||+.-=-+ =|---+.+|+++|.+.| +|+++.|...++-+.
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g 42 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTG 42 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccc
Confidence 3566544333 24445788999999888 899999976665543
No 159
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=88.97 E-value=6.9 Score=35.93 Aligned_cols=42 Identities=26% Similarity=0.212 Sum_probs=29.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
||||+.-=-+ =|---+.+|++.|. .+++|+++.|+..++-+.
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s 42 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGAS 42 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccc
Confidence 3555544333 35556788899997 999999999987666554
No 160
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=87.84 E-value=5.8 Score=43.08 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=66.9
Q ss_pred eeeccChHh---hhccCCcceeeccc---C-chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHH
Q 012151 347 IVKWAPQQE---VLAHPAVGGFWTHS---G-WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEI 419 (470)
Q Consensus 347 ~~~~~p~~~---lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l 419 (470)
+.+++++.+ +++.+++ ++.-+ | ..++.||+++|+|-.+.|...+--.-+. + +.-|+.+++ .+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-NDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-CCHHHH
Confidence 336777776 6666777 76542 5 4488999999775222222221111111 2 233677777 678999
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 420 ERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 420 ~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
+++|.++++... ++.+++.+++.+.+++ .+...-++.+++.+++
T Consensus 419 a~ai~~~l~~~~-~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 419 AAAIKRALEMPE-EEQRERMQAMQERLRR-----YDVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHH
Confidence 999999998411 3445555556555543 6777777777777653
No 161
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=87.40 E-value=15 Score=33.90 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=28.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
||||+.-=-+. |---+.+|+++|. .+|+|+++.|...++-..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~-~~~~V~VvAP~~~qSg~g 42 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLS-EKHEVFVVAPDKERSATG 42 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHH-hCCcEEEEccCCCCcccc
Confidence 45666554443 4445788889996 468999999976655443
No 162
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=87.00 E-value=9.8 Score=38.46 Aligned_cols=133 Identities=10% Similarity=0.054 Sum_probs=79.6
Q ss_pred CCeEEEEEcCcccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceee-eccC--hHhhh
Q 012151 282 PKSVVYISFGSVIAINKDGFLEIAWGVANSR-MPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIV-KWAP--QQEVL 357 (470)
Q Consensus 282 ~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~-~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~p--~~~lL 357 (470)
...++++| +.+.+..+....++++ ..+=+...... ...+ ..+ ++. +|+.+. .+.+ ..+++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~------s~kL-~~L-~~y-~nvvly~~~~~~~l~~ly 345 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM------SSKL-MSL-DKY-DNVKLYPNITTQKIQELY 345 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc------cHHH-HHH-Hhc-CCcEEECCcChHHHHHHH
Confidence 34467666 2556666666666653 44432222110 0001 122 344 666655 6666 34599
Q ss_pred ccCCcceeecccC--chhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHH-
Q 012151 358 AHPAVGGFWTHSG--WNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQE- 434 (470)
Q Consensus 358 ~~~~~~~~I~HGG--~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~- 434 (470)
..+++-+-|+||+ ..++.||+.+|+|+++.=...... ..+.. |-.... -+.+++.++|.++|++ ++
T Consensus 346 ~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~~-~~~~~m~~~i~~lL~d---~~~ 414 (438)
T TIGR02919 346 QTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFEH-NEVDQLISKLKDLLND---PNQ 414 (438)
T ss_pred HhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----CceecC-CCHHHHHHHHHHHhcC---HHH
Confidence 9999988999987 679999999999999965432211 11111 333333 4679999999999998 64
Q ss_pred HHHHHHH
Q 012151 435 MRARIMH 441 (470)
Q Consensus 435 ~~~~a~~ 441 (470)
++++..+
T Consensus 415 ~~~~~~~ 421 (438)
T TIGR02919 415 FRELLEQ 421 (438)
T ss_pred HHHHHHH
Confidence 4444433
No 163
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.02 E-value=29 Score=32.12 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=46.0
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCce----e------eeccChHhhhccCCcceee-cccCch
Q 012151 304 IAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGC----I------VKWAPQQEVLAHPAVGGFW-THSGWN 372 (470)
Q Consensus 304 i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~------~~~~p~~~lL~~~~~~~~I-~HGG~g 372 (470)
+...+++.+..+++..+ ..-|+.+...+..|+. + .++=|+-+.|+.++. +| |--..+
T Consensus 189 l~k~l~~~g~~~lisfS----------RRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSin 256 (329)
T COG3660 189 LVKILENQGGSFLISFS----------RRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSIN 256 (329)
T ss_pred HHHHHHhCCceEEEEee----------cCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhh
Confidence 44555666777777763 3345544444443322 1 134588999977765 55 455578
Q ss_pred hhHHhhhcCCceecC
Q 012151 373 STLESMCEGVPMICQ 387 (470)
Q Consensus 373 s~~eal~~GvP~v~~ 387 (470)
-+.||++.|+|+-++
T Consensus 257 M~sEAasTgkPv~~~ 271 (329)
T COG3660 257 MCSEAASTGKPVFIL 271 (329)
T ss_pred hhHHHhccCCCeEEE
Confidence 889999999998764
No 164
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=85.06 E-value=21 Score=33.29 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=28.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSST 58 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 58 (470)
||||+.-=-+. |---+.+|++.|.+.| +|+++.|...++-.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~ 41 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSAT 41 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccc
Confidence 35555544442 4566889999998887 79999997655443
No 165
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=84.97 E-value=7.7 Score=36.75 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=57.9
Q ss_pred CCceee-eccChH---hhhccCCcceeecc--cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC-ccc
Q 012151 343 GRGCIV-KWAPQQ---EVLAHPAVGGFWTH--SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW-KLE 415 (470)
Q Consensus 343 ~~~~~~-~~~p~~---~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~~ 415 (470)
+++.+. +++|.+ ++|+.++++.|+|+ =|.||+.-.+..|+|+++- .+-+.|....++ |+=+-.+. .++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e~--gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTEQ--GLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHhC--CCeEEecCCccc
Confidence 566654 777755 49999999888876 4899999999999999973 344555554444 77775555 688
Q ss_pred HHHHHHHHHHHh
Q 012151 416 RMEIERAIRRVM 427 (470)
Q Consensus 416 ~~~l~~ai~~vl 427 (470)
...+.++=+++.
T Consensus 281 ~~~v~e~~rql~ 292 (322)
T PRK02797 281 EDIVREAQRQLA 292 (322)
T ss_pred HHHHHHHHHHHH
Confidence 888877755543
No 166
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=84.93 E-value=23 Score=32.80 Aligned_cols=42 Identities=24% Similarity=0.154 Sum_probs=28.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
||||+.-=-+. |---+.+|+++|.+. |+|+++.|...++-+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g 42 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGAS 42 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCc
Confidence 35555544432 444588899999888 7999999976655443
No 167
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=84.67 E-value=1.7 Score=35.07 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=27.0
Q ss_pred CEEEEEcCCCcc---ChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 16 RRVILFPLPFQG---HINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 16 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
|+|+|+.-|-.+ .-..+++|+.+-++|||+|.++.+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 578888877644 34568999999999999999999853
No 168
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=84.59 E-value=4.9 Score=37.68 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhC-CCCEEEEEcCCCCCCCcccCCCchhHHHHh---cCCceeeeccChHhhhccCCcceeecccCchhhH
Q 012151 300 GFLEIAWGVANS-RMPFLWVVRPGLVSGAEWVEPLPKGFLEML---DGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTL 375 (470)
Q Consensus 300 ~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~ 375 (470)
+...+.++.+.. +..++++..+....... ....+.. ...+.+.+-++-.+++.+++. +||-.+ .+-.
T Consensus 142 ~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGl 212 (269)
T PF05159_consen 142 FLDMLESFAKENPDAKLVVKPHPDERGGNK------YSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINS-TVGL 212 (269)
T ss_pred HHHHHHHHHHHCCCCEEEEEECchhhCCCC------hhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECC-HHHH
Confidence 344455555554 56666666553222111 1111121 122334477888899988887 888776 4889
Q ss_pred HhhhcCCceecCCC
Q 012151 376 ESMCEGVPMICQPY 389 (470)
Q Consensus 376 eal~~GvP~v~~P~ 389 (470)
||+.+|+|++++..
T Consensus 213 EAll~gkpVi~~G~ 226 (269)
T PF05159_consen 213 EALLHGKPVIVFGR 226 (269)
T ss_pred HHHHcCCceEEecC
Confidence 99999999999764
No 169
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=82.83 E-value=33 Score=31.92 Aligned_cols=41 Identities=15% Similarity=-0.002 Sum_probs=25.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC---CCeEEEEeCCCCCccc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSK---GFSVTIIHTDFNFSST 58 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~r---Gh~V~~~~~~~~~~~~ 58 (470)
|||+.-=-+ =|---+.+|++.|.+. |++|++++|...++-.
T Consensus 2 ~ILlTNDDG-I~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ 45 (261)
T PRK13931 2 RILITNDDG-INAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGV 45 (261)
T ss_pred eEEEEcCCC-CCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCC
Confidence 444443322 2444567788888763 3799999997665544
No 170
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=82.07 E-value=30 Score=29.19 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=73.7
Q ss_pred EEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcce
Q 012151 285 VVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGG 364 (470)
Q Consensus 285 ~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~ 364 (470)
.|-|-+||.+ +....+.+...|++.+..+-+.+... .+.|+.+.+.. .-+.+..++.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa--------HR~p~~l~~~~-------------~~~~~~~~~v 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA--------HRTPERLLEFV-------------KEYEARGADV 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T--------TTSHHHHHHHH-------------HHTTTTTESE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec--------cCCHHHHHHHH-------------HHhccCCCEE
Confidence 4556677776 67788889999999987665555332 23555442111 1111122333
Q ss_pred eecccCch----hhHHhhhcCCceecCCCccchhhhHH---HHHh-hhheeEEcCC---cccHHHHHHHHHHHhccchhH
Q 012151 365 FWTHSGWN----STLESMCEGVPMICQPYLPDQMVNAR---YVSH-FWRVGLHSEW---KLERMEIERAIRRVMVEAEGQ 433 (470)
Q Consensus 365 ~I~HGG~g----s~~eal~~GvP~v~~P~~~DQ~~na~---rv~~-~~G~G~~l~~---~~~~~~l~~ai~~vl~~~~~~ 433 (470)
||.=.|.. ++..++- -.|+|.+|...++..... -+.+ =-|+++..-. ..++..++-.|-. +.| +
T Consensus 59 iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa-~~d---~ 133 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILA-LKD---P 133 (150)
T ss_dssp EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHH-TT----H
T ss_pred EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHh-cCC---H
Confidence 88877743 4444444 799999999877553332 2222 0134333222 3444444444432 245 7
Q ss_pred HHHHHHHHHHHHHHHH
Q 012151 434 EMRARIMHLKEKVDFC 449 (470)
Q Consensus 434 ~~~~~a~~l~~~~~~~ 449 (470)
+++++.+..++++++.
T Consensus 134 ~l~~kl~~~~~~~~~~ 149 (150)
T PF00731_consen 134 ELREKLRAYREKMKEK 149 (150)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 8999999999888764
No 171
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.37 E-value=6.1 Score=33.62 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=44.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPD 75 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 75 (470)
.|+|++.-.|+.|-..-.+.+++.|.++|++|-=+.++.-.+--.. -||+.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR-----~GF~Ivdl~t 60 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR-----IGFKIVDLAT 60 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE-----eeeEEEEccC
Confidence 4699999999999999999999999999999976666443322222 5788888763
No 172
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=79.31 E-value=8.9 Score=36.95 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=39.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCcccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSK--GFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~ 59 (470)
|||+++-..+.|++.-+.++.+.|+++ +.+|++++.+.+.+..+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 579999999999999999999999887 89999999977766554
No 173
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=79.18 E-value=1.8 Score=42.66 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=67.0
Q ss_pred CCceee-eccChHhhhccCCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC------ccc
Q 012151 343 GRGCIV-KWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW------KLE 415 (470)
Q Consensus 343 ~~~~~~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~------~~~ 415 (470)
+++..+ +..+..++|..+++ +||=-. +.+.|.+..+.|+|......|.+... .|.-..... .-+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeCC
Confidence 444554 44568889989998 999884 58999999999999888777766322 143333211 357
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012151 416 RMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLI 464 (470)
Q Consensus 416 ~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
.++|.++|+.++++. ..++++.++..+++-. ...|.++.+.++.|+
T Consensus 323 ~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 899999999999862 3456667777777754 344455555555443
No 174
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=79.11 E-value=2.5 Score=36.69 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=25.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
|+|.++.-.+. +- -.|+++..+|||+||.++-...
T Consensus 1 mKIaiIgAsG~--~G--s~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASGK--AG--SRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCch--hH--HHHHHHHHhCCCeeEEEEeChH
Confidence 46777766554 22 3578999999999999987433
No 175
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=78.94 E-value=22 Score=33.00 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=25.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
|+|+++...+. -..|++.|.++||+|+..+.....
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCc
Confidence 35666644332 678999999999999987765443
No 176
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=78.53 E-value=51 Score=33.81 Aligned_cols=108 Identities=14% Similarity=0.200 Sum_probs=73.1
Q ss_pred eeeeccChHh---hhccCCcceeec--ccCchhh-HHhhhcCC----ceecCCCccchhhhHHHHHhhhheeEEcCCccc
Q 012151 346 CIVKWAPQQE---VLAHPAVGGFWT--HSGWNST-LESMCEGV----PMICQPYLPDQMVNARYVSHFWRVGLHSEWKLE 415 (470)
Q Consensus 346 ~~~~~~p~~~---lL~~~~~~~~I~--HGG~gs~-~eal~~Gv----P~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 415 (470)
.+...+|+.+ ++..+++ ++|| .-|+|-+ .|.++++. |+|+--+.+ |. ++ +.-++.+++ .+
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP-~d 434 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP-YD 434 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC-CC
Confidence 4457788777 5556777 3333 3588854 59999977 544432221 11 34 455677777 78
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 416 RMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 416 ~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
.++++++|.+.|+... ++-+++.++|.+.++. .....=++.+++.|++
T Consensus 435 ~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 435 PVRMDETIYVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 8999999999998632 4556777777777776 6777778888887764
No 177
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=77.68 E-value=7 Score=40.57 Aligned_cols=75 Identities=9% Similarity=0.018 Sum_probs=47.0
Q ss_pred ChHhhhccCCcceeec---ccCc-hhhHHhhhcCCceecCCCcc-chhhhHHHHHhhhheeEEcCC------cccHHHHH
Q 012151 352 PQQEVLAHPAVGGFWT---HSGW-NSTLESMCEGVPMICQPYLP-DQMVNARYVSHFWRVGLHSEW------KLERMEIE 420 (470)
Q Consensus 352 p~~~lL~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~-DQ~~na~rv~~~~G~G~~l~~------~~~~~~l~ 420 (470)
+..+++..+++ +|. +=|+ -++.||+++|+|+|+....+ ..... ..+......|+.+.. .-+.++|+
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 46667766777 666 3454 48999999999999976643 22211 112210014666642 34678888
Q ss_pred HHHHHHhcc
Q 012151 421 RAIRRVMVE 429 (470)
Q Consensus 421 ~ai~~vl~~ 429 (470)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 889888864
No 178
>PHA02542 41 41 helicase; Provisional
Probab=76.89 E-value=5.1 Score=40.91 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=72.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc-cccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN-YFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAIN 95 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~-~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (470)
-+++..-|+.|-..-.+.+|...++.|+.|.|++-+-...... .+.+...++....+-. +..+ ++......+.
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~~~i~~~~l~~-l~~~-----~~~~~~~~~~ 265 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRIDANLLDVSLDDIDD-LSKA-----EYKAKMEKLR 265 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCCHHHHhh-cCHH-----HHHHHHHHHH
Confidence 4677788889999999999999988899999999875544322 1211223344333321 1111 1111111111
Q ss_pred h---------------hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccch----------------------HHH
Q 012151 96 G---------------KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFT----------------------HTV 138 (470)
Q Consensus 96 ~---------------~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~----------------------~~v 138 (470)
. .....+...++++..+.+ .++|+||.|.+.... -.+
T Consensus 266 ~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g------~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~l 339 (473)
T PHA02542 266 SKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKN------FKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGL 339 (473)
T ss_pred HHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcC------CCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHH
Confidence 0 012355566666654322 359999999766321 146
Q ss_pred HhhcCCCeEEEec
Q 012151 139 AADFKLPTIVLQT 151 (470)
Q Consensus 139 A~~~giP~v~~~~ 151 (470)
|..++||++.++-
T Consensus 340 Akel~vpVi~lsQ 352 (473)
T PHA02542 340 AVEHDVVVWTAAQ 352 (473)
T ss_pred HHHhCCeEEEEEe
Confidence 8889999998753
No 179
>PRK06904 replicative DNA helicase; Validated
Probab=76.48 E-value=8.2 Score=39.46 Aligned_cols=125 Identities=10% Similarity=0.160 Sum_probs=72.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCCcccc-cccCCCCCeeEEecCCC--CCCCcccccCHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYS-KGFSVTIIHTDFNFSSTN-YFSCNYPHFDFHSFPDG--FSETEASVEDVAVFFT 92 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~~~-~~~~~~~gi~~~~~~~~--~~~~~~~~~~~~~~~~ 92 (470)
=|++...|+.|-..-++.+|...+. .|+.|.|++.+-....+. .+.+...++....+..+ +..+ ....+...+.
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~--e~~~~~~a~~ 300 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQ--DWAKISSTVG 300 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCCCHH--HHHHHHHHHH
Confidence 4677888899999999999998865 599999999875544332 23334456655554322 2111 1111111122
Q ss_pred HHHh-----------hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccch-------------------HHHHhhc
Q 012151 93 AING-----------KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFT-------------------HTVAADF 142 (470)
Q Consensus 93 ~~~~-----------~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~-------------------~~vA~~~ 142 (470)
.+.. .....++..++++.... .+.|+||.|.+.... -.+|..+
T Consensus 301 ~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~-------~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 373 (472)
T PRK06904 301 MFKQKPNLYIDDSSGLTPTELRSRARRVYREN-------GGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKEL 373 (472)
T ss_pred HHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-------CCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 2211 11224444555554432 158999999754210 1347888
Q ss_pred CCCeEEEe
Q 012151 143 KLPTIVLQ 150 (470)
Q Consensus 143 giP~v~~~ 150 (470)
+||+|.++
T Consensus 374 ~ipVi~ls 381 (472)
T PRK06904 374 KVPVVALS 381 (472)
T ss_pred CCeEEEEE
Confidence 99999875
No 180
>PRK08506 replicative DNA helicase; Provisional
Probab=76.34 E-value=8 Score=39.56 Aligned_cols=125 Identities=13% Similarity=0.172 Sum_probs=72.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc-cccCCCCCeeEEecCCC-CCCCcccccCHHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN-YFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFTAI 94 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~-~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~~ 94 (470)
=+++...|+.|-..-.+.+|....+.|+.|.|++.+-....+. .+.+...++.+..+..+ +..+ ....+......+
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~--e~~~~~~a~~~l 271 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDD--EWERLSDACDEL 271 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHH--HHHHHHHHHHHH
Confidence 5677888888999999999999888999999999875544332 23223345555444321 1111 011111111212
Q ss_pred Hh----------hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccc-------------------hHHHHhhcCCC
Q 012151 95 NG----------KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFF-------------------THTVAADFKLP 145 (470)
Q Consensus 95 ~~----------~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~-------------------~~~vA~~~giP 145 (470)
.. .....+.+.++++.... .+.++||.|.+..- ...+|..++||
T Consensus 272 ~~~~l~I~d~~~~ti~~I~~~~r~l~~~~-------~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ip 344 (472)
T PRK08506 272 SKKKLFVYDSGYVNIHQVRAQLRKLKSQH-------PEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDIP 344 (472)
T ss_pred HcCCeEEECCCCCCHHHHHHHHHHHHHhC-------CCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 11 01224444555554432 15899999986421 11358889999
Q ss_pred eEEEe
Q 012151 146 TIVLQ 150 (470)
Q Consensus 146 ~v~~~ 150 (470)
++.++
T Consensus 345 Vi~ls 349 (472)
T PRK08506 345 IIALS 349 (472)
T ss_pred EEEEe
Confidence 99875
No 181
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=75.77 E-value=6 Score=32.84 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
++.+|++.+.++-+|-.-..-++..|.++|++|+++...-..
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~ 43 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQ 43 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 367899999999999999999999999999999999986443
No 182
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=74.73 E-value=6.6 Score=37.59 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=32.9
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 17 RVILFPL-PFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 17 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
|++|+.. ||-|-..-..++|-.++++|++|.+++++...+.-.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHH
Confidence 4555555 455999999999999999999999999986655433
No 183
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=73.78 E-value=5.2 Score=32.14 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=32.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
+|++.+.++-.|.....-++..|.++|++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 488999999999999999999999999999887764
No 184
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=73.34 E-value=34 Score=32.98 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=33.1
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 17 RVILFPLP-FQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 17 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
||+|++.= |-|-..-..++|-.|++.|.+|.+++++.-.+.-.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d 46 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGD 46 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHh
Confidence 56666654 55998899999999999999988888875555443
No 185
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=73.15 E-value=5.8 Score=32.46 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=33.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCccccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNY 60 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 60 (470)
+||++...++.+=.. ...+.++|.++|++|.++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 467777777755555 99999999999999999999766666553
No 186
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=73.01 E-value=36 Score=32.88 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=60.1
Q ss_pred CCceee-eccChHh---hhccCCcceeecc--cCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC-ccc
Q 012151 343 GRGCIV-KWAPQQE---VLAHPAVGGFWTH--SGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW-KLE 415 (470)
Q Consensus 343 ~~~~~~-~~~p~~~---lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~~ 415 (470)
+++.+. +++|.++ +|..+++..|.|. =|.|++.-.|..|+|+++- .+-+.| +-+.+ .|+=+.-.. .++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~-~~l~~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFW-QDLKE-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHH-HHHHh-CCCeEEeccccCC
Confidence 356654 7888655 8999999777764 5899999999999999982 333343 44555 377766555 799
Q ss_pred HHHHHHHHHHHhc
Q 012151 416 RMEIERAIRRVMV 428 (470)
Q Consensus 416 ~~~l~~ai~~vl~ 428 (470)
...|+++=+++.+
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888865
No 187
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=72.72 E-value=5.7 Score=40.27 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=44.5
Q ss_pred hhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC-cccHHHHHHHHHHHhccchhHHHHHHHH
Q 012151 373 STLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW-KLERMEIERAIRRVMVEAEGQEMRARIM 440 (470)
Q Consensus 373 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~ 440 (470)
++.||+++|+|+|+. ++..=+.-|+. .--|...++ .-....++.++.++..| ++++.++.
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp~~e~~~~~a~~~~kl~~~---p~l~~~~~ 441 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDPGQEAVAELADALLKLRRD---PELWARMG 441 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCCchHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence 789999999999994 44445555666 467777777 23334799999999999 77765544
No 188
>PRK05595 replicative DNA helicase; Provisional
Probab=72.48 E-value=11 Score=38.41 Aligned_cols=124 Identities=16% Similarity=0.273 Sum_probs=70.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCCcccc-cccCCCCCeeEEecCCC-CCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILY-SKGFSVTIIHTDFNFSSTN-YFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~~~-~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (470)
=+++...|+.|-..-.+.+|..++ +.|+.|.|++.+-....+. .+.+...++....+..+ +..+ ....+......
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~~~~~~~l~~~--e~~~~~~~~~~ 280 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDK--DWENIARASGP 280 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHH--HHHHHHHHHHH
Confidence 466788888899999999998775 5699999999875543332 23333355555444321 1111 00111111111
Q ss_pred HHh----------hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccc-------------------hHHHHhhcCC
Q 012151 94 ING----------KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFF-------------------THTVAADFKL 144 (470)
Q Consensus 94 ~~~----------~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~-------------------~~~vA~~~gi 144 (470)
+.. .....+...++++... .++|+||.|.+..- ...+|..++|
T Consensus 281 l~~~~l~i~d~~~~t~~~i~~~~r~~~~~--------~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i 352 (444)
T PRK05595 281 LAAAKIFIDDTAGVSVMEMRSKCRRLKIE--------HGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEMEC 352 (444)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHh--------cCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCC
Confidence 110 0113344455555443 37999999975421 1134788999
Q ss_pred CeEEEe
Q 012151 145 PTIVLQ 150 (470)
Q Consensus 145 P~v~~~ 150 (470)
|++.++
T Consensus 353 ~vi~ls 358 (444)
T PRK05595 353 PVIALS 358 (444)
T ss_pred eEEEee
Confidence 999864
No 189
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=72.17 E-value=14 Score=37.14 Aligned_cols=125 Identities=12% Similarity=0.210 Sum_probs=70.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCCcccc-cccCCCCCeeEEecCCC-CCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILY-SKGFSVTIIHTDFNFSSTN-YFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~~~-~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (470)
=+++...|+.|-..-++.+|..++ +.|+.|.|++.+.....+. .+.+...++....+..+ +..+ ....+...+..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~--~~~~~~~~~~~ 273 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDS--DFNRLLNAVDR 273 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHH--HHHHHHHHHHH
Confidence 467778888899999999998887 6799999999875544332 22223345555444321 1110 01111111111
Q ss_pred HHh----------hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccc------------------hHHHHhhcCCC
Q 012151 94 ING----------KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFF------------------THTVAADFKLP 145 (470)
Q Consensus 94 ~~~----------~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~------------------~~~vA~~~giP 145 (470)
+.. .....+...++++.... .++|+||.|.+... ...+|..+++|
T Consensus 274 l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~-------~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~ 346 (421)
T TIGR03600 274 LSEKDLYIDDTGGLTVAQIRSIARRIKRKK-------GGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVP 346 (421)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHhc-------CCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 111 11223344455554332 16899999986421 12367889999
Q ss_pred eEEEe
Q 012151 146 TIVLQ 150 (470)
Q Consensus 146 ~v~~~ 150 (470)
++.++
T Consensus 347 Vi~ls 351 (421)
T TIGR03600 347 VVLLA 351 (421)
T ss_pred EEEec
Confidence 99865
No 190
>PRK06321 replicative DNA helicase; Provisional
Probab=70.98 E-value=15 Score=37.47 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=32.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCCc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYS-KGFSVTIIHTDFNFS 56 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~ 56 (470)
=+++...|+.|-..-.+.+|...+. .|..|.|++-+-...
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ 268 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVD 268 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 4677888899999999999998874 599999999875443
No 191
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=69.55 E-value=8.3 Score=35.39 Aligned_cols=99 Identities=8% Similarity=0.065 Sum_probs=51.7
Q ss_pred CCCeEEEEEcCcccc---cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCce-eeeccC---h
Q 012151 281 TPKSVVYISFGSVIA---INKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGC-IVKWAP---Q 353 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~---~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~p---~ 353 (470)
.+++.|.+..|+... .+.+.+..+++.+.+.+.++++..++... . +..-..+.+..++++. +.+-.+ .
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-E----KEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-H----HHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-H----HHHHHHHHHhcccceEeecCCCCHHHH
Confidence 345677777777654 77788999999998888665544422210 0 0000111111111122 223233 3
Q ss_pred HhhhccCCcceeecccCchhhHHhhhcCCceecC
Q 012151 354 QEVLAHPAVGGFWTHSGWNSTLESMCEGVPMICQ 387 (470)
Q Consensus 354 ~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 387 (470)
..++.++++ +|+.- .|.++=|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 347878886 77765 48999999999999998
No 192
>PRK08006 replicative DNA helicase; Provisional
Probab=69.00 E-value=17 Score=37.13 Aligned_cols=125 Identities=11% Similarity=0.155 Sum_probs=72.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCCccc-ccccCCCCCeeEEecCCC-CCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILY-SKGFSVTIIHTDFNFSST-NYFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~~-~~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (470)
=|++..-|+.|-..-.+.+|...+ +.|+.|.|++.+-....+ ..+.+...++....+..+ +..+ ....+...+..
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~--e~~~~~~a~~~ 303 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDE--DWARISGTMGI 303 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHH--HHHHHHHHHHH
Confidence 467788889999999999998887 459999999987544333 233334456665555422 1111 11111111222
Q ss_pred H-Hh----------hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccch-------------------HHHHhhcC
Q 012151 94 I-NG----------KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFT-------------------HTVAADFK 143 (470)
Q Consensus 94 ~-~~----------~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~-------------------~~vA~~~g 143 (470)
+ .+ .....+...++++.... .+.|+||+|.+.... -.+|..++
T Consensus 304 ~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~-------~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ 376 (471)
T PRK08006 304 LLEKRNMYIDDSSGLTPTEVRSRARRIFREH-------GGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQ 376 (471)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-------CCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 2 11 11234444555554432 158999999754210 13577899
Q ss_pred CCeEEEe
Q 012151 144 LPTIVLQ 150 (470)
Q Consensus 144 iP~v~~~ 150 (470)
||+|.++
T Consensus 377 ipVi~Ls 383 (471)
T PRK08006 377 VPVVALS 383 (471)
T ss_pred CeEEEEE
Confidence 9999875
No 193
>PRK08760 replicative DNA helicase; Provisional
Probab=68.48 E-value=9.7 Score=39.01 Aligned_cols=124 Identities=13% Similarity=0.162 Sum_probs=70.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCCccc-ccccCCCCCeeEEecCCC-CCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYS-KGFSVTIIHTDFNFSST-NYFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~~-~~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (470)
=+++...|+.|-..-.+.+|...+. .|+.|.|++.+-....+ ..+.+...++....+..+ +..+ ....+...+..
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~--e~~~~~~a~~~ 308 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDE--DWARVTGAIKM 308 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHH--HHHHHHHHHHH
Confidence 5677888899999999999998865 59999999987554333 222223344444433322 1110 01111111111
Q ss_pred HHhh----------cchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccc---h----------------HHHHhhcCC
Q 012151 94 INGK----------CIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFF---T----------------HTVAADFKL 144 (470)
Q Consensus 94 ~~~~----------~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~---~----------------~~vA~~~gi 144 (470)
+... ....+...++++... .++|+||.|.+... . -.+|..++|
T Consensus 309 l~~~~l~I~d~~~~t~~~I~~~~r~l~~~--------~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~i 380 (476)
T PRK08760 309 LKETKIFIDDTPGVSPEVLRSKCRRLKRE--------HDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNV 380 (476)
T ss_pred HhcCCEEEeCCCCCCHHHHHHHHHHHHHh--------cCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCC
Confidence 1110 123444455555543 37899999965421 0 126788999
Q ss_pred CeEEEe
Q 012151 145 PTIVLQ 150 (470)
Q Consensus 145 P~v~~~ 150 (470)
|++.++
T Consensus 381 pVi~ls 386 (476)
T PRK08760 381 PVIALS 386 (476)
T ss_pred EEEEee
Confidence 999865
No 194
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=68.18 E-value=53 Score=28.95 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC---cccccccCCCCCeeEEecCCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF---SSTNYFSCNYPHFDFHSFPDGF 77 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~---~~~~~~~~~~~gi~~~~~~~~~ 77 (470)
+-.|.+++..+.|-....+.+|-..+.+|++|.++-.-... .... ......++.+...+.++
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~-~l~~l~~v~~~~~g~~~ 86 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERN-LLEFGGGVEFHVMGTGF 86 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHH-HHhcCCCcEEEECCCCC
Confidence 45899999999999999999999999999999997652211 1111 11123578888887653
No 195
>PRK08840 replicative DNA helicase; Provisional
Probab=67.95 E-value=17 Score=37.05 Aligned_cols=125 Identities=11% Similarity=0.157 Sum_probs=72.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCCcccc-cccCCCCCeeEEecCCC-CCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYS-KGFSVTIIHTDFNFSSTN-YFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~~~-~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (470)
=+++..-|+.|-..-.+.+|...+. .|+.|.|++.+-....+. .+.+...++....+..+ +..+ ....+...+..
T Consensus 219 LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~--e~~~~~~a~~~ 296 (464)
T PRK08840 219 LIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDE--DWARISSTMGI 296 (464)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCCHH--HHHHHHHHHHH
Confidence 4667788899999999999998874 599999999875544332 23334456655444322 1111 11111111222
Q ss_pred HHh-----------hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccc---h----------------HHHHhhcC
Q 012151 94 ING-----------KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFF---T----------------HTVAADFK 143 (470)
Q Consensus 94 ~~~-----------~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~---~----------------~~vA~~~g 143 (470)
+.. .....++..++++.... .+.|+||.|.+..- + -.+|..++
T Consensus 297 l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~-------~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ 369 (464)
T PRK08840 297 LMEKKNMYIDDSSGLTPTEVRSRARRIAREH-------GGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELN 369 (464)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-------CCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhC
Confidence 211 11234445555554432 14899999975421 1 13577899
Q ss_pred CCeEEEe
Q 012151 144 LPTIVLQ 150 (470)
Q Consensus 144 iP~v~~~ 150 (470)
||+|.++
T Consensus 370 ipVi~Ls 376 (464)
T PRK08840 370 VPVVALS 376 (464)
T ss_pred CeEEEEE
Confidence 9999875
No 196
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.14 E-value=1e+02 Score=29.84 Aligned_cols=127 Identities=17% Similarity=0.081 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHH
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTA 93 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (470)
++.|++++..+--||-=.|.-=|..|++.|.+|.++.........+-+ +.++|+++.++.. +.......-+.-.++.
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~--~hprI~ih~m~~l-~~~~~~p~~~~l~lKv 87 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL--NHPRIRIHGMPNL-PFLQGGPRVLFLPLKV 87 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh--cCCceEEEeCCCC-cccCCCchhhhhHHHH
Confidence 467899999999999999999999999999999999876554433321 4689999999732 2111111111111222
Q ss_pred HHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCC-CccchHHHHh----hcCCCeEEEecccHHH
Q 012151 94 INGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDA-FWFFTHTVAA----DFKLPTIVLQTCGVSG 156 (470)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~-~~~~~~~vA~----~~giP~v~~~~~~~~~ 156 (470)
+.. +-.++-.+... .++|.++.-. -......++. ..|...++=|....+.
T Consensus 88 f~Q-----fl~Ll~aL~~~--------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 88 FWQ-----FLSLLWALFVL--------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred HHH-----HHHHHHHHHhc--------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 221 11222222221 4889988763 2344445554 4477788766655444
No 197
>PRK05636 replicative DNA helicase; Provisional
Probab=67.04 E-value=9.1 Score=39.45 Aligned_cols=124 Identities=14% Similarity=0.176 Sum_probs=70.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCCccc-ccccCCCCCeeEEecCCC-CCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILY-SKGFSVTIIHTDFNFSST-NYFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~~-~~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (470)
=|++...|+.|-..-.+.+|...+ +.|..|.|++.+-....+ ..+.+...++....+..+ +..+ ....+...+..
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~--e~~~~~~a~~~ 344 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDED--AWEKLVQRLGK 344 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHH--HHHHHHHHHHH
Confidence 467788888899999999998876 458999999887554333 222223344544333221 1111 11111111111
Q ss_pred HHhh----------cchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccch-------------------HHHHhhcCC
Q 012151 94 INGK----------CIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFT-------------------HTVAADFKL 144 (470)
Q Consensus 94 ~~~~----------~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~-------------------~~vA~~~gi 144 (470)
+... ....++..++++... .++|+||+|.+..-. ..+|..++|
T Consensus 345 l~~~~l~I~d~~~~ti~~I~~~~r~~~~~--------~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~i 416 (505)
T PRK05636 345 IAQAPIFIDDSANLTMMEIRSKARRLKQK--------HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDV 416 (505)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHh--------cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 1110 112344455555443 378999999765221 137889999
Q ss_pred CeEEEe
Q 012151 145 PTIVLQ 150 (470)
Q Consensus 145 P~v~~~ 150 (470)
|+|.++
T Consensus 417 pVi~ls 422 (505)
T PRK05636 417 PLIAIS 422 (505)
T ss_pred eEEEEe
Confidence 999975
No 198
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=66.86 E-value=81 Score=26.91 Aligned_cols=60 Identities=17% Similarity=0.353 Sum_probs=41.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe---CCCCCcccccccCCCCCeeEEecCCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIH---TDFNFSSTNYFSCNYPHFDFHSFPDGF 77 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~---~~~~~~~~~~~~~~~~gi~~~~~~~~~ 77 (470)
-|.+++.++.|-....+.+|-....+|++|.++- ......... .....+++++.....+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~-~l~~l~~v~~~~~g~~~ 66 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELK-ALERLPNIEIHRMGRGF 66 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHH-HHHhCCCcEEEECCCCC
Confidence 5788899999999999999999999999999943 321111111 11133588888877543
No 199
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=66.80 E-value=6.2 Score=34.66 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=30.5
Q ss_pred CEEEEEcCCCccChHH------------HHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecC
Q 012151 16 RRVILFPLPFQGHINP------------MLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFP 74 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 74 (470)
.+|++...+++-.+.| -..||+++..+|++|+++..+.... .. .+++.+.+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~--~p-----~~~~~i~v~ 67 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP--PP-----PGVKVIRVE 67 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-----------TTEEEEE-S
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc--cc-----ccceEEEec
Confidence 3566655555544444 4789999999999999999973211 12 567666653
No 200
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=66.55 E-value=95 Score=27.62 Aligned_cols=159 Identities=9% Similarity=0.056 Sum_probs=82.7
Q ss_pred CCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhc-CCceeeeccChHhhhcc
Q 012151 281 TPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLD-GRGCIVKWAPQQEVLAH 359 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~p~~~lL~~ 359 (470)
.++.++.|..|.++ ...+..|.+.+..+.++- .. +.+.+.+..+ ..+..........-+..
T Consensus 9 ~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 9 SNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE----------LTENLVKLVEEGKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC----------CCHHHHHHHhCCCEEEEecCCChhhcCC
Confidence 45678888777665 234455555676665442 21 2233322222 22344444444556666
Q ss_pred CCcceeecccCchhhHHhhh----cCCceecCCCccchhhhH-----HHHHhh-hheeEEcCC--cccHHHHHHHHHHHh
Q 012151 360 PAVGGFWTHSGWNSTLESMC----EGVPMICQPYLPDQMVNA-----RYVSHF-WRVGLHSEW--KLERMEIERAIRRVM 427 (470)
Q Consensus 360 ~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na-----~rv~~~-~G~G~~l~~--~~~~~~l~~ai~~vl 427 (470)
+++ +|.--+.-.+.+.++ .|+++-++ |.+..+ ..+.+. +-+|+.-.. ..-+..|++.|++++
T Consensus 71 adl--ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~ 144 (202)
T PRK06718 71 AFL--VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALY 144 (202)
T ss_pred ceE--EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHc
Confidence 676 888888776666654 45555442 332222 222332 233333332 233466777777777
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012151 428 VEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLI 464 (470)
Q Consensus 428 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
.. +...+-+.+.++++.+++.+.......+..+.++
T Consensus 145 ~~-~~~~~~~~~~~~R~~~k~~~~~~~~R~~~~~~~~ 180 (202)
T PRK06718 145 DE-SYESYIDFLYECRQKIKELQIEKREKQILLQEVL 180 (202)
T ss_pred ch-hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 43 2245667777777777765333333444444444
No 201
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=66.53 E-value=22 Score=32.50 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=34.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCCccc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSK-GFSVTIIHTDFNFSST 58 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~~ 58 (470)
-+++...++.|-..-++.++..++.+ |+.|.|++.+.....+
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~ 57 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQL 57 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHH
Confidence 46677777889999999999888877 9999999997655433
No 202
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=66.50 E-value=92 Score=33.65 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=60.6
Q ss_pred EEEEEcCCC-ccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHH
Q 012151 17 RVILFPLPF-QGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAIN 95 (470)
Q Consensus 17 ~il~~~~~~-~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (470)
.|.+.+..+ .|-..-.+.|++.|.++|.+|.++-|-... | +. .........
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~------------------p--~~--------~~~~~~~~~ 55 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQP------------------P--LT--------MSEVEALLA 55 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccC------------------C--CC--------HHHHHHHHh
Confidence 466664444 589999999999999999999998752221 1 00 000001111
Q ss_pred h-hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCcc---------chHHHHhhcCCCeEEEeccc
Q 012151 96 G-KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWF---------FTHTVAADFKLPTIVLQTCG 153 (470)
Q Consensus 96 ~-~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~---------~~~~vA~~~giP~v~~~~~~ 153 (470)
. .....+..+++.+.... .+.|+||+|...+ ....+|+.++.|++.+....
T Consensus 56 ~~~~~~~~~~I~~~~~~l~-------~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 56 SGQLDELLEEIVARYHALA-------KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred ccCChHHHHHHHHHHHHhc-------cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 0 11222333333332222 3789999775432 23677999999999988653
No 203
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=66.23 E-value=79 Score=26.59 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=85.7
Q ss_pred EEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcce
Q 012151 285 VVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGG 364 (470)
Q Consensus 285 ~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~ 364 (470)
.|-|-+||.+ +.+..+..++.|++++.++-..+-.. ++.|+...+.. .-.....++.
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSA--------HRTPe~m~~ya-------------~~a~~~g~~v 60 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSA--------HRTPEKMFEYA-------------EEAEERGVKV 60 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEec--------cCCHHHHHHHH-------------HHHHHCCCeE
Confidence 4667799987 67788889999999988765544222 23555432111 1122344555
Q ss_pred eecccCch---hhHHhhhcCCceecCCCcc---chhhhHHHHHhhhheeEEcCC-----cccHHHHHHHHHHHhccchhH
Q 012151 365 FWTHSGWN---STLESMCEGVPMICQPYLP---DQMVNARYVSHFWRVGLHSEW-----KLERMEIERAIRRVMVEAEGQ 433 (470)
Q Consensus 365 ~I~HGG~g---s~~eal~~GvP~v~~P~~~---DQ~~na~rv~~~~G~G~~l~~-----~~~~~~l~~ai~~vl~~~~~~ 433 (470)
+|.-.|.- .=+-|-.-=+|++++|... +-.+--.-+.+ +--|+-+.. ..|..-|+..|-. +.| +
T Consensus 61 iIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPVaTvaIg~a~NAallAa~ILa-~~d---~ 135 (162)
T COG0041 61 IIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPVATVAIGNAANAALLAAQILA-IKD---P 135 (162)
T ss_pred EEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhc-CCCCCeeEEEeecchhhHHHHHHHHHc-CCC---H
Confidence 66655521 1122344478999999874 44455566777 677775533 3455555544422 335 8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012151 434 EMRARIMHLKEKVDFCLR 451 (470)
Q Consensus 434 ~~~~~a~~l~~~~~~~~~ 451 (470)
.++++..++++..++.+.
T Consensus 136 ~l~~kl~~~r~~~~~~V~ 153 (162)
T COG0041 136 ELAEKLAEFREAQTEEVL 153 (162)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 204
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=65.80 E-value=40 Score=31.28 Aligned_cols=38 Identities=18% Similarity=0.050 Sum_probs=32.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 18 VILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 18 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
+++..-++-|...-...+|..++++|++|.++..+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 45555677799999999999999999999999987643
No 205
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=65.77 E-value=12 Score=27.61 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=31.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
.-++++..+...|......+|+.|.++|..|...=.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 468888888889999999999999999999986544
No 206
>PRK06749 replicative DNA helicase; Provisional
Probab=64.88 E-value=14 Score=37.35 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=34.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFS 56 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 56 (470)
=|++...|+.|-..-.+.+|...+.+|..|.|++.+-...
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ 227 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSK 227 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHH
Confidence 4677888899999999999999998899999999875543
No 207
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=63.64 E-value=24 Score=35.14 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCccccc-c--cCCCCCeeEEecC
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNY-F--SCNYPHFDFHSFP 74 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~-~--~~~~~gi~~~~~~ 74 (470)
++..|+++-.-+.|-...+-.||+.|.++|+.|.+++.+-+++.... + ++...++.|....
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~ 162 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG 162 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCC
Confidence 46789999999999999999999999999999999999877664432 1 1233577776653
No 208
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=63.54 E-value=53 Score=33.07 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=54.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHh
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAING 96 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (470)
|+.++..+.. .+.+++.|.+-|-+|..+.+........+ ..... + +.+......
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~---~~~~~----~-~~~~~~v~~------------- 340 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA---EDKRW----L-EMLGVEVKY------------- 340 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH---HHHHH----H-HhcCCCcee-------------
Confidence 7777777765 88899999999999998877532111110 00000 0 000000000
Q ss_pred hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEe
Q 012151 97 KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQ 150 (470)
Q Consensus 97 ~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~ 150 (470)
...+.+.++.+.+ .+||++|... .+..+|+++|||++.+.
T Consensus 341 --~~dl~~~~~~l~~---------~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 341 --RASLEDDMEAVLE---------FEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred --ccCHHHHHHHHhh---------CCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 0122222233322 3899999883 46678999999999854
No 209
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=62.13 E-value=12 Score=33.11 Aligned_cols=42 Identities=17% Similarity=0.025 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEeCCCCCcc
Q 012151 15 GRRVILFPLPFQGHINP-MLHLASILYSKGFSVTIIHTDFNFSS 57 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p-~l~La~~L~~rGh~V~~~~~~~~~~~ 57 (470)
..||++--.|+ ....- ...|+++|.++||+|.++.++...+.
T Consensus 5 ~k~IllgVTGs-iaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~ 47 (196)
T PRK08305 5 GKRIGFGLTGS-HCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTT 47 (196)
T ss_pred CCEEEEEEcCH-HHHHHHHHHHHHHHHhCcCEEEEEECHhHHHH
Confidence 34676666665 45555 79999999999999999998655443
No 210
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=61.99 E-value=16 Score=29.18 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=32.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
++++.+.+..-|-.-+.-||..|.++||+|.++-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 68999999999999999999999999999998854
No 211
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=61.68 E-value=91 Score=28.82 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=25.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFS 56 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 56 (470)
+|+++...+-| ..||+.|.++|+.|++.+...+..
T Consensus 4 ~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~ 38 (248)
T PRK08057 4 RILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG 38 (248)
T ss_pred eEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC
Confidence 68887766655 578999999999988866544433
No 212
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=60.62 E-value=40 Score=25.39 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeE
Q 012151 32 MLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDF 70 (470)
Q Consensus 32 ~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~ 70 (470)
++.+++.|.+.|+++. ++. ......++ .|+.+
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~-gTa~~L~~-----~Gi~~ 33 (90)
T smart00851 2 LVELAKRLAELGFELV-ATG-GTAKFLRE-----AGLPV 33 (90)
T ss_pred HHHHHHHHHHCCCEEE-Ecc-HHHHHHHH-----CCCcc
Confidence 4689999999999983 444 44444444 66665
No 213
>PRK09165 replicative DNA helicase; Provisional
Probab=60.54 E-value=34 Score=35.32 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=70.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC---------------CCeEEEEeCCCCCcccc-cccCCCCCeeEEecCCCCCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSK---------------GFSVTIIHTDFNFSSTN-YFSCNYPHFDFHSFPDGFSET 80 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~V~~~~~~~~~~~~~-~~~~~~~gi~~~~~~~~~~~~ 80 (470)
=+++...|+.|-..-.+.+|...+.+ |..|.|++.+-....+. .+.+...++....+..+
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~---- 294 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRG---- 294 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcC----
Confidence 46777888889999999999888653 78999999875554332 22223345544443221
Q ss_pred cccccCHHHHHHHHHhh-------------cchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccc-------------
Q 012151 81 EASVEDVAVFFTAINGK-------------CIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFF------------- 134 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-------------~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~------------- 134 (470)
.....++..+....... ....+...++++... .++|+||.|.+..-
T Consensus 295 ~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~--------~~~~lvvIDyLqli~~~~~~~~~~r~~ 366 (497)
T PRK09165 295 KISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQ--------HGLDLLVVDYLQLIRGSSKRSSDNRVQ 366 (497)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHh--------cCCCEEEEcchHhccCCCCCCCCchHH
Confidence 11111222222211111 123444455555443 37999999975411
Q ss_pred --------hHHHHhhcCCCeEEEe
Q 012151 135 --------THTVAADFKLPTIVLQ 150 (470)
Q Consensus 135 --------~~~vA~~~giP~v~~~ 150 (470)
...+|..++||++.++
T Consensus 367 ev~~is~~LK~lAkel~ipVi~ls 390 (497)
T PRK09165 367 EISEITQGLKALAKELNIPVIALS 390 (497)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEee
Confidence 0245788899999864
No 214
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=60.23 E-value=27 Score=33.63 Aligned_cols=119 Identities=12% Similarity=-0.038 Sum_probs=66.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeecc--C-hHhhhccCCcceeecccCch
Q 012151 296 INKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWA--P-QQEVLAHPAVGGFWTHSGWN 372 (470)
Q Consensus 296 ~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--p-~~~lL~~~~~~~~I~HGG~g 372 (470)
.+.+.+.++++.+.+.+.++++..++.. ....-+.+.+.. .++.+.+-. . -..++.++++ +|+.- .|
T Consensus 194 Wp~e~~a~li~~l~~~~~~ivl~~G~~~------e~~~~~~i~~~~-~~~~l~g~~sL~elaali~~a~l--~I~nD-SG 263 (322)
T PRK10964 194 WPEAHWRELIGLLAPSGLRIKLPWGAEH------EEQRAKRLAEGF-PYVEVLPKLSLEQVARVLAGAKA--VVSVD-TG 263 (322)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEeCCCHH------HHHHHHHHHccC-CcceecCCCCHHHHHHHHHhCCE--EEecC-Cc
Confidence 6777888888888766666654433221 000111221111 122233222 2 3348888887 88865 48
Q ss_pred hhHHhhhcCCceecCCCccchhhhH------HHHHhhhheeEEcCCcccHHHHHHHHHHHhc
Q 012151 373 STLESMCEGVPMICQPYLPDQMVNA------RYVSHFWRVGLHSEWKLERMEIERAIRRVMV 428 (470)
Q Consensus 373 s~~eal~~GvP~v~~P~~~DQ~~na------~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~ 428 (470)
.++=|.+.|+|+|++=-..+-..++ ..+.- .+..+. .++++.+.++++++|+
T Consensus 264 p~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~---~~~cm~-~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 264 LSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS---PGKSMA-DLSAETVFQKLETLIS 321 (322)
T ss_pred HHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC---CCcccc-cCCHHHHHHHHHHHhh
Confidence 9999999999999874333322111 11110 011111 5888999888888764
No 215
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=60.03 E-value=12 Score=32.62 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=41.3
Q ss_pred ccCCcceeecccCchhhHHhhhcCCceecCCCcc-----------------------chhhhHHHHHhhhheeEEcCCcc
Q 012151 358 AHPAVGGFWTHSGWNSTLESMCEGVPMICQPYLP-----------------------DQMVNARYVSHFWRVGLHSEWKL 414 (470)
Q Consensus 358 ~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~-----------------------DQ~~na~rv~~~~G~G~~l~~~~ 414 (470)
.+.+++.+|++||...+..... ++|+|-+|... ....+...+.+-+|+-+..-.--
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~ 109 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYD 109 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEES
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEEC
Confidence 3455555999999999888877 99999999843 23334555555444433333334
Q ss_pred cHHHHHHHHHHHhcc
Q 012151 415 ERMEIERAIRRVMVE 429 (470)
Q Consensus 415 ~~~~l~~ai~~vl~~ 429 (470)
+.+++...|.++..+
T Consensus 110 ~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 110 SEEEIEAAIKQAKAE 124 (176)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 667777777776543
No 216
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=58.66 E-value=2.1e+02 Score=30.16 Aligned_cols=140 Identities=11% Similarity=0.083 Sum_probs=71.4
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcc
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVG 363 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~ 363 (470)
+.|-|-+||.+ +....+.....|+.++..+-+.+.. ..+.|+.+.+. +-... ...++
T Consensus 411 ~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~s--------ahr~~~~~~~~----------~~~~~---~~~~~ 467 (577)
T PLN02948 411 PLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVS--------AHRTPERMFSY----------ARSAH---SRGLQ 467 (577)
T ss_pred CeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEEC--------CccCHHHHHHH----------HHHHH---HCCCC
Confidence 44555555554 4455566666666666555444322 12344433211 11111 11233
Q ss_pred eeecccCchhhHHh---hhcCCceecCCCccc---hhhhHHHHHhhh--heeEEc---CCcccHHHHHHHHHHHhccchh
Q 012151 364 GFWTHSGWNSTLES---MCEGVPMICQPYLPD---QMVNARYVSHFW--RVGLHS---EWKLERMEIERAIRRVMVEAEG 432 (470)
Q Consensus 364 ~~I~HGG~gs~~ea---l~~GvP~v~~P~~~D---Q~~na~rv~~~~--G~G~~l---~~~~~~~~l~~ai~~vl~~~~~ 432 (470)
.||.-.|.-.-+-. -..-+|+|++|.... -.+--.-+.+ + |+.+.. +...++.-++..|-. +.|
T Consensus 468 v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i~~~~~aa~~a~~i~~-~~~--- 542 (577)
T PLN02948 468 VIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAIGNATNAGLLAVRMLG-ASD--- 542 (577)
T ss_pred EEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEecCChHHHHHHHHHHHh-cCC---
Confidence 37777774322222 223589999998642 2332244555 5 532221 224455555544422 235
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 012151 433 QEMRARIMHLKEKVDFCLR 451 (470)
Q Consensus 433 ~~~~~~a~~l~~~~~~~~~ 451 (470)
+.++++.+..++++++.+.
T Consensus 543 ~~~~~~~~~~~~~~~~~~~ 561 (577)
T PLN02948 543 PDLLDKMEAYQEDMRDMVL 561 (577)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7889999988888887644
No 217
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.24 E-value=40 Score=31.92 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=35.6
Q ss_pred cCCcceeecccCchhhHHhhh----cCCceecCCCccchhhhHHHHHhhhheeEEcCC--cccHHHHHHHHHHHhcc
Q 012151 359 HPAVGGFWTHSGWNSTLESMC----EGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW--KLERMEIERAIRRVMVE 429 (470)
Q Consensus 359 ~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~--~~~~~~l~~ai~~vl~~ 429 (470)
.+++ +|+-||-||+..|+. .++|++++- .| ++.. .++.+++.+++++++++
T Consensus 64 ~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN-----------------~G-~lGFLt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 64 ISDF--LISLGGDGTLISLCRKAAEYDKFVLGIH-----------------AG-HLGFLTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred CCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEe-----------------CC-CcccCCcCCHHHHHHHHHHHHcC
Confidence 4555 999999999998765 478888743 23 1222 45677888888887765
No 218
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=57.94 E-value=28 Score=31.71 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=21.3
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 20 LFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 20 ~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
+++..+.|-+ -.+||++|.++||+|+++..
T Consensus 19 ~itN~SSG~i--G~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 19 GITNHSTGQL--GKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred eecCccchHH--HHHHHHHHHhCCCEEEEEEC
Confidence 3444444432 36788999999999999874
No 219
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=57.55 E-value=9.4 Score=29.29 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHhhcchHHHHHHHHHHh
Q 012151 32 MLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAINGKCIMPFRDCLAEILM 111 (470)
Q Consensus 32 ~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 111 (470)
++.+|+.|.+.|+++ ++++.......+ .|+....+-+....+.....+. ++++.+..
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~-----~Gi~~~~v~~~~~~~~~~~g~~----------------~i~~~i~~ 58 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKE-----HGIEVTEVVNKIGEGESPDGRV----------------QIMDLIKN 58 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHH-----TT--EEECCEEHSTG-GGTHCH----------------HHHHHHHT
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHH-----cCCCceeeeeecccCccCCchh----------------HHHHHHHc
Confidence 578999999999765 445555555555 7888665542211110000011 22333332
Q ss_pred cccCCCCCCCCCcEEEeCCCccc---------hHHHHhhcCCCeE
Q 012151 112 KSKADQNKDSSPCCLITDAFWFF---------THTVAADFKLPTI 147 (470)
Q Consensus 112 ~~~~~~~~~~~pDlvi~D~~~~~---------~~~vA~~~giP~v 147 (470)
.+.|+||..+.... -..+|..++||++
T Consensus 59 ---------~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 59 ---------GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---------TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---------CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 48999997754422 1456888899876
No 220
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.41 E-value=18 Score=30.08 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
++.||++.+.+.-||-.-.--+++.|++.|.+|.....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 36799999999889999999999999999999998654
No 221
>PRK10867 signal recognition particle protein; Provisional
Probab=56.90 E-value=65 Score=32.53 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCCcccc-cc--cCCCCCeeEEec
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSK-GFSVTIIHTDFNFSSTN-YF--SCNYPHFDFHSF 73 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~~~-~~--~~~~~gi~~~~~ 73 (470)
+..|+++..++.|-..-...||..|+++ |+.|.++..+.++.... .+ .++..++.+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPS 162 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEec
Confidence 4567788888889999999999999999 99999999987665432 11 012356666554
No 222
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=56.75 E-value=29 Score=31.67 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCcEEE-eCCCc-cchHHHHhhcCCCeEEEecc
Q 012151 122 SPCCLI-TDAFW-FFTHTVAADFKLPTIVLQTC 152 (470)
Q Consensus 122 ~pDlvi-~D~~~-~~~~~vA~~~giP~v~~~~~ 152 (470)
-||+++ +|+.. --+..=|.++|||+|.+.-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 499885 56555 45667789999999998655
No 223
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=56.56 E-value=39 Score=34.13 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=34.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCCccc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYS-KGFSVTIIHTDFNFSST 58 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~~ 58 (470)
-+++...|+.|-..-++.+|..++. .|+.|.|++.+.....+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 5677778888999999999998875 59999999987655443
No 224
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=55.78 E-value=1.5e+02 Score=26.41 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=73.5
Q ss_pred CCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhc-CCceeeeccChHhhhcc
Q 012151 281 TPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLD-GRGCIVKWAPQQEVLAH 359 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~p~~~lL~~ 359 (470)
.+++++.|..|... ..-+..|.+.+..+.++- +. .-+.+.+-.. .++....--.+...+..
T Consensus 8 ~gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvs-p~----------~~~~l~~l~~~~~i~~~~~~~~~~dl~~ 69 (205)
T TIGR01470 8 EGRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIA-EE----------LESELTLLAEQGGITWLARCFDADILEG 69 (205)
T ss_pred CCCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEc-CC----------CCHHHHHHHHcCCEEEEeCCCCHHHhCC
Confidence 34568888777664 223455556777765543 21 1122221111 24444322223445666
Q ss_pred CCcceeecccCchhhHH-----hhhcCCceec--CCCccchhhhHHHHHhh-hheeEEcCC--cccHHHHHHHHHHHhcc
Q 012151 360 PAVGGFWTHSGWNSTLE-----SMCEGVPMIC--QPYLPDQMVNARYVSHF-WRVGLHSEW--KLERMEIERAIRRVMVE 429 (470)
Q Consensus 360 ~~~~~~I~HGG~gs~~e-----al~~GvP~v~--~P~~~DQ~~na~rv~~~-~G~G~~l~~--~~~~~~l~~ai~~vl~~ 429 (470)
+.+ +|..-|...+.+ |-..|+|+-+ -|-..| +..-..+.+. +-+|+.-.. ..-+..|++.|++++..
T Consensus 70 ~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~ 146 (205)
T TIGR01470 70 AFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLPP 146 (205)
T ss_pred cEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcch
Confidence 666 888888764443 4457888833 332222 1111222231 233433332 23346678888888764
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 012151 430 AEGQEMRARIMHLKEKVDFC 449 (470)
Q Consensus 430 ~~~~~~~~~a~~l~~~~~~~ 449 (470)
.. ..+-+.+.++++.+++.
T Consensus 147 ~~-~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 147 SL-GDLATLAATWRDAVKKR 165 (205)
T ss_pred hH-HHHHHHHHHHHHHHHhh
Confidence 22 34556666666666554
No 225
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=55.74 E-value=23 Score=31.09 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=31.3
Q ss_pred cChHH-HHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecC
Q 012151 27 GHINP-MLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFP 74 (470)
Q Consensus 27 GH~~p-~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 74 (470)
|=+.- .-.|+..|+++||+|++++.......... .+.|++...+|
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~---~y~gv~l~~i~ 62 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF---EYNGVRLVYIP 62 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc---ccCCeEEEEeC
Confidence 44444 34577778888999999987655443333 56788888886
No 226
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.90 E-value=15 Score=34.29 Aligned_cols=52 Identities=12% Similarity=0.248 Sum_probs=35.5
Q ss_pred CCcceeecccCchhhHHhhh------cCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 360 PAVGGFWTHSGWNSTLESMC------EGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 360 ~~~~~~I~HGG~gs~~eal~------~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
+++ +|+-||-||+..|++ .++|++++-.. .+|-.. +.+++++.+++++++++
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT--DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc--cCCHHHHHHHHHHHHcC
Confidence 455 999999999999976 48898885431 111111 35667777777777764
No 227
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.82 E-value=53 Score=32.31 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc-cc--cCCCCCeeEEe
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN-YF--SCNYPHFDFHS 72 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~-~~--~~~~~gi~~~~ 72 (470)
++.-|+|+-.-+.|-...+-.||..++++|..+.+++.+-++.-.. .+ .+...++.|+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe
Confidence 4567888889999999999999999999999999999876654332 11 11235666654
No 228
>PRK07773 replicative DNA helicase; Validated
Probab=54.70 E-value=40 Score=37.67 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=72.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCCcccc-cccCCCCCeeEEecCCC-CCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSK-GFSVTIIHTDFNFSSTN-YFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~~~-~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (470)
-+++..-|+.|-..-.+.+|...+.+ |..|.|++-+.....+. .+.+...++....+..+ +... ....+......
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~~g~l~~~--~~~~~~~a~~~ 296 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMRSGRMSDD--DWTRLARAMGE 296 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHH--HHHHHHHHHHH
Confidence 47778888999999999999988754 88999999875554333 22223344544433221 1110 00001111111
Q ss_pred HHh----------hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccc-------------------hHHHHhhcCC
Q 012151 94 ING----------KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFF-------------------THTVAADFKL 144 (470)
Q Consensus 94 ~~~----------~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~-------------------~~~vA~~~gi 144 (470)
+.. .....+...++++... .+.|+||.|.+..- ...+|..++|
T Consensus 297 l~~~~i~i~d~~~~~i~~i~~~~r~~~~~--------~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~v 368 (886)
T PRK07773 297 ISEAPIFIDDTPNLTVMEIRAKARRLRQE--------ANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEV 368 (886)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHh--------cCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 111 1123344445555543 37899999986522 1246889999
Q ss_pred CeEEEec
Q 012151 145 PTIVLQT 151 (470)
Q Consensus 145 P~v~~~~ 151 (470)
|++.++-
T Consensus 369 pvi~lsQ 375 (886)
T PRK07773 369 PVVALSQ 375 (886)
T ss_pred cEEEecc
Confidence 9999763
No 229
>PRK07004 replicative DNA helicase; Provisional
Probab=54.53 E-value=39 Score=34.49 Aligned_cols=125 Identities=13% Similarity=0.211 Sum_probs=70.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCCccc-ccccCCCCCeeEEecCCC-CCCCcccccCHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYS-KGFSVTIIHTDFNFSST-NYFSCNYPHFDFHSFPDG-FSETEASVEDVAVFFTA 93 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~~-~~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (470)
=+++...|+.|-..-++.+|..++. .|+.|.|++.+-....+ ..+.+...++....+..+ +..+ ....+......
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~--e~~~~~~a~~~ 292 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDE--DWPKLTHAVQK 292 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHH--HHHHHHHHHHH
Confidence 4677888899999999999988764 69999999987554433 222223344444443322 1111 11111111222
Q ss_pred HHhh----------cchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccch-------------------HHHHhhcCC
Q 012151 94 INGK----------CIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFT-------------------HTVAADFKL 144 (470)
Q Consensus 94 ~~~~----------~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~-------------------~~vA~~~gi 144 (470)
+... ....+...++++.... .++|+||.|.+..-. ..+|..++|
T Consensus 293 l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~-------~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~i 365 (460)
T PRK07004 293 MSEAQLFIDETGGLNPMELRSRARRLARQC-------GKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDV 365 (460)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHhC-------CCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 2211 0123344455554432 158999999765221 135778999
Q ss_pred CeEEEe
Q 012151 145 PTIVLQ 150 (470)
Q Consensus 145 P~v~~~ 150 (470)
|++.++
T Consensus 366 pVi~ls 371 (460)
T PRK07004 366 PVIALS 371 (460)
T ss_pred eEEEEe
Confidence 999865
No 230
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.22 E-value=17 Score=34.79 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=36.9
Q ss_pred cceeecccCchhhHHhhhc----CCceecCCCccchhhhHHHHHhhhheeEEcCC--cccHHHHHHHHHHHhcc
Q 012151 362 VGGFWTHSGWNSTLESMCE----GVPMICQPYLPDQMVNARYVSHFWRVGLHSEW--KLERMEIERAIRRVMVE 429 (470)
Q Consensus 362 ~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~--~~~~~~l~~ai~~vl~~ 429 (470)
++++|+=||-||+..|.+. ++|++++- .| ++.. ..+.+++.+++++++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN-----------------~G-~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTIN-----------------TG-HLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEe-----------------CC-CCcccccCCHHHHHHHHHHHHcC
Confidence 3449999999999999764 78988853 23 2222 45678888888888875
No 231
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=53.83 E-value=76 Score=32.00 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=36.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCCcc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILY-SKGFSVTIIHTDFNFSS 57 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~ 57 (470)
+..++++..+|.|-..-...||..|. ++|..|.++..+.++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 45778888888899999999999997 58999999999876653
No 232
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=52.68 E-value=21 Score=33.93 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=36.1
Q ss_pred cCCcceeecccCchhhHHhhhc----CCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 359 HPAVGGFWTHSGWNSTLESMCE----GVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 359 ~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
.+++ +|+-||-||+.+++.. ++|++++-+. .+|-.. ..+.+++.+++++++++
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT--DIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc--cCCHHHHHHHHHHHHcC
Confidence 3555 9999999999999763 6788775421 111111 35667888888888765
No 233
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=52.54 E-value=1.2e+02 Score=26.20 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=41.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC---CCCCcccccccCCCCCeeEEecCCCCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT---DFNFSSTNYFSCNYPHFDFHSFPDGFS 78 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~---~~~~~~~~~~~~~~~gi~~~~~~~~~~ 78 (470)
--|.+++..+.|-..-.+.+|-..+.+|++|.++-. .........+. . .++.+.....++.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~-~-~~~~~~~~g~g~~ 69 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFE-P-HGVEFQVMGTGFT 69 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHH-h-cCcEEEECCCCCe
Confidence 468888889999999999999999999999976532 21111111110 1 2788888776543
No 234
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=52.48 E-value=1.2e+02 Score=30.60 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=22.5
Q ss_pred CCCcEEEeCCCccchHHHHhhcCCCeEEEe
Q 012151 121 SSPCCLITDAFWFFTHTVAADFKLPTIVLQ 150 (470)
Q Consensus 121 ~~pDlvi~D~~~~~~~~vA~~~giP~v~~~ 150 (470)
.+||++|... .+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 3899999883 57789999999998854
No 235
>PRK05748 replicative DNA helicase; Provisional
Probab=52.23 E-value=54 Score=33.33 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=34.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCCccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYS-KGFSVTIIHTDFNFSST 58 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~~ 58 (470)
--+++...|+.|-..-.+.+|...+. .|+.|.|++.+-....+
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 35778888899999999999998764 59999999987555433
No 236
>PLN02929 NADH kinase
Probab=52.21 E-value=56 Score=31.12 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=43.2
Q ss_pred CCcceeecccCchhhHHhhh---cCCceecCCCcc------chhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 360 PAVGGFWTHSGWNSTLESMC---EGVPMICQPYLP------DQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 360 ~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~------DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
+++ +|+-||-||+..|.. .++|++++-... .++.|... +. .-+|-..+ .+.+++.+++.+++++
T Consensus 65 ~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~~--~~~~~~~~~L~~il~g 137 (301)
T PLN02929 65 VDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLCA--ATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCcccccc--CCHHHHHHHHHHHHcC
Confidence 455 999999999999854 478998876642 23333322 11 12443333 4678999999999986
No 237
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=51.23 E-value=1.6e+02 Score=25.19 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=23.3
Q ss_pred cCCcceeecccCch------hhHHhhhcCCceecCCC
Q 012151 359 HPAVGGFWTHSGWN------STLESMCEGVPMICQPY 389 (470)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 389 (470)
.+.+ +++|+|-| .+.+|...++|+|++.-
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3555 88888855 67899999999999963
No 238
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=49.82 E-value=62 Score=36.09 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=60.7
Q ss_pred cChHh---hhccCCcceeecc---cCch-hhHHhhhcCC-----ceecCCCccchhhhHHHHHhhhh-eeEEcCCcccHH
Q 012151 351 APQQE---VLAHPAVGGFWTH---SGWN-STLESMCEGV-----PMICQPYLPDQMVNARYVSHFWR-VGLHSEWKLERM 417 (470)
Q Consensus 351 ~p~~~---lL~~~~~~~~I~H---GG~g-s~~eal~~Gv-----P~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~ 417 (470)
+|+.+ ++..++| ++.- -|+| +..|+++++. ++| + |=-.-|. . +| -|+.+++ .+.+
T Consensus 448 l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLIL--S---EfaGaa~---~-L~~~AllVNP-~D~~ 515 (934)
T PLN03064 448 LDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLIL--S---EFAGAAQ---S-LGAGAILVNP-WNIT 515 (934)
T ss_pred CCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEE--e---CCCchHH---H-hCCceEEECC-CCHH
Confidence 55554 5666777 5544 4777 5569999954 333 2 2111222 2 33 4567777 7889
Q ss_pred HHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 418 EIERAIRRVMV-EAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 418 ~l~~ai~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
+++++|.+.|+ +. +.-+++.+++.+.+.. .....-++.+++.|.
T Consensus 516 ~vA~AI~~AL~M~~--~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~ 560 (934)
T PLN03064 516 EVAASIAQALNMPE--EEREKRHRHNFMHVTT-----HTAQEWAETFVSELN 560 (934)
T ss_pred HHHHHHHHHHhCCH--HHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHH
Confidence 99999999987 41 3445555555555554 566666777666664
No 239
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=49.71 E-value=32 Score=30.56 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
+.+|++.+.++-.|-....-++..|.++|++|+++...-
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~ 120 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDV 120 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCC
Confidence 568999999999999999999999999999999887653
No 240
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=49.37 E-value=1.3e+02 Score=29.05 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=33.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
.-|.=++.++.|-.=-.+.|++.|.++|++|.+++-...
T Consensus 38 IsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 38 ISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred EEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 456667888999999999999999999999999988544
No 241
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=48.99 E-value=45 Score=33.99 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEec
Q 012151 15 GRRVILFPLPFQGHINPM------------LHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSF 73 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~------------l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~ 73 (470)
..+|++...|++=.+.|. .+||+++..+|++||+++.+.... . ..+++++.+
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~--~-----p~~v~~i~V 319 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA--D-----PQGVKVIHV 319 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC--C-----CCCceEEEe
Confidence 568999988888877774 689999999999999999754321 1 156666554
No 242
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=48.95 E-value=82 Score=29.14 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=22.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
|+|+++...+-| ..||+.|.++|+ |++-+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~ 30 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVA 30 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEE
Confidence 568887666554 579999999999 665443
No 243
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=48.45 E-value=46 Score=31.51 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=38.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSST 58 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 58 (470)
++.+|.+.-.|+-|--.-.-.|.++|.++||.|-+++-+...+..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T 94 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT 94 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC
Confidence 356899999999999999999999999999999999876665544
No 244
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=48.26 E-value=75 Score=24.91 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=52.0
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHhhcchHHHHHH
Q 012151 27 GHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAINGKCIMPFRDCL 106 (470)
Q Consensus 27 GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 106 (470)
++-.-++.+++.|.+.|+++. + ++.......+ .|+.+..+... . + ..+.+.+.+
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~-a-T~gT~~~l~~-----~gi~~~~v~~~-~-~-----------------~~~~i~~~i 63 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV-A-TEGTAKYLQE-----AGIPVEVVNKV-S-E-----------------GRPNIVDLI 63 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE-E-chHHHHHHHH-----cCCeEEEEeec-C-C-----------------CchhHHHHH
Confidence 355678899999999999984 3 4444455554 67766554311 0 0 112233333
Q ss_pred HHHHhcccCCCCCCCCCcEEEeCCC-------ccchHHHHhhcCCCeEE
Q 012151 107 AEILMKSKADQNKDSSPCCLITDAF-------WFFTHTVAADFKLPTIV 148 (470)
Q Consensus 107 ~~l~~~~~~~~~~~~~pDlvi~D~~-------~~~~~~vA~~~giP~v~ 148 (470)
++ .++|+||..+. .+.....|-.+|||++.
T Consensus 64 ~~------------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 64 KN------------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred Hc------------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 32 38999998532 24456778999999995
No 245
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=47.76 E-value=58 Score=27.64 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=24.7
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 012151 22 PLPFQGHINPMLHLASILYSKGFSVTIIH 50 (470)
Q Consensus 22 ~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 50 (470)
+.++-|-..-.+.|++.|.++|.+|.++-
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k 33 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK 33 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence 34556888999999999999999999963
No 246
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=47.60 E-value=80 Score=25.03 Aligned_cols=87 Identities=20% Similarity=0.118 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHHHhhcchHHHHHHH
Q 012151 28 HINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAINGKCIMPFRDCLA 107 (470)
Q Consensus 28 H~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 107 (470)
+-.-+..+|+.|.+.|++|. + ++.......+ .|+.+..+......+ ..+ .+.+.++++
T Consensus 11 dk~~~~~~a~~l~~~G~~i~-a-T~gTa~~L~~-----~gi~~~~v~~~~~~~---~~~------------~~~i~~~i~ 68 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY-A-TEGTADFLLE-----NGIPVTPVAWPSEEP---QND------------KPSLRELLA 68 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE-E-ccHHHHHHHH-----cCCCceEeeeccCCC---CCC------------chhHHHHHH
Confidence 44568899999999999984 3 4344444444 566555542110000 000 123333333
Q ss_pred HHHhcccCCCCCCCCCcEEEeCCC---------ccchHHHHhhcCCCeEE
Q 012151 108 EILMKSKADQNKDSSPCCLITDAF---------WFFTHTVAADFKLPTIV 148 (470)
Q Consensus 108 ~l~~~~~~~~~~~~~pDlvi~D~~---------~~~~~~vA~~~giP~v~ 148 (470)
+ .++|+||.-+. .+.....|-.++||++.
T Consensus 69 ~------------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 69 E------------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred c------------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 3 38999998532 24456778899999973
No 247
>PRK05920 aromatic acid decarboxylase; Validated
Probab=47.48 E-value=32 Score=30.75 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=32.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSST 58 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 58 (470)
+||++.-.++ ....=...+.+.|.+.||+|+++.+..-.+.+
T Consensus 4 krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 3677665555 44578999999999999999999997655544
No 248
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=47.37 E-value=1.5e+02 Score=30.05 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=22.5
Q ss_pred CCCcEEEeCCCccchHHHHhhcCCCeEEEe
Q 012151 121 SSPCCLITDAFWFFTHTVAADFKLPTIVLQ 150 (470)
Q Consensus 121 ~~pDlvi~D~~~~~~~~vA~~~giP~v~~~ 150 (470)
.+||++|... ....+|.++|||++.+.
T Consensus 376 ~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 3899999985 46788999999998764
No 249
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.22 E-value=27 Score=33.21 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=37.4
Q ss_pred cCCcceeecccCchhhHHhhh----cCCceecCCCccchhhhHHHHHhhhheeEEcCC--cccHHHHHHHHHHHhcc
Q 012151 359 HPAVGGFWTHSGWNSTLESMC----EGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW--KLERMEIERAIRRVMVE 429 (470)
Q Consensus 359 ~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~--~~~~~~l~~ai~~vl~~ 429 (470)
.+++ +|+=||-||+..|+. .++|++++-+ |- +.. ..+++++.+++++++++
T Consensus 64 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~-----------------G~-lGFLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 64 SADM--VISIGGDGTFLRTATYVGNSNIPILGINT-----------------GR-LGFLATVSKEEIEETIDELLNG 120 (292)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec-----------------CC-CCcccccCHHHHHHHHHHHHcC
Confidence 4555 999999999999877 3788887533 31 222 46778888888888875
No 250
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=47.12 E-value=44 Score=28.66 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHh-CCCeEEEEeC
Q 012151 28 HINPMLHLASILYS-KGFSVTIIHT 51 (470)
Q Consensus 28 H~~p~l~La~~L~~-rGh~V~~~~~ 51 (470)
|.....+|+++|.+ +|.++.+..-
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 77888999999988 5665555544
No 251
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.06 E-value=32 Score=27.75 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=34.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
||++.+.++-.|-.-..-++.-|..+|++|.+......
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 58899999999999999999999999999999887533
No 252
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=47.06 E-value=27 Score=30.69 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=30.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
||++.-.++.|=+.-.+.+.++|.+.|++|+++.++.-
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 56666666666666667999999999999999998654
No 253
>PLN02470 acetolactate synthase
Probab=46.26 E-value=1.5e+02 Score=31.32 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=51.5
Q ss_pred EcCcccccCH--HHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeecc-Ch----Hh---hhc
Q 012151 289 SFGSVIAINK--DGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWA-PQ----QE---VLA 358 (470)
Q Consensus 289 s~Gs~~~~~~--~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-p~----~~---lL~ 358 (470)
+|||...... ...+.+++.|++.+.+.++-+.++.... +-+.+.+ .++++.+.-- -+ ++ -..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~------l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASME------IHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHH------HHHHHhc--cCCceEEEeccHHHHHHHHHHHHHH
Confidence 4666655222 2356788888888888888775542110 1111210 1123333111 01 11 111
Q ss_pred cCCcceeecccCch------hhHHhhhcCCceecCC
Q 012151 359 HPAVGGFWTHSGWN------STLESMCEGVPMICQP 388 (470)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (470)
+..+.++++|.|-| .+.+|...++|||++.
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 22344588998855 7889999999999995
No 254
>PRK09620 hypothetical protein; Provisional
Probab=45.84 E-value=39 Score=30.82 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccChHH------------HHHHHHHHHhCCCeEEEEeCC
Q 012151 16 RRVILFPLPFQGHINP------------MLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~V~~~~~~ 52 (470)
.+|++...|+.=.+.| -..||++|.++|++|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4666665554433322 368999999999999999764
No 255
>PRK06849 hypothetical protein; Provisional
Probab=45.15 E-value=45 Score=33.13 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
+++||+..... ...+.+|+.|.++||+|+++....
T Consensus 4 ~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 67888885333 368999999999999999987753
No 256
>PRK04940 hypothetical protein; Provisional
Probab=45.14 E-value=49 Score=28.87 Aligned_cols=31 Identities=0% Similarity=0.055 Sum_probs=25.2
Q ss_pred CCcEEEeCCCc-cchHHHHhhcCCCeEEEecc
Q 012151 122 SPCCLITDAFW-FFTHTVAADFKLPTIVLQTC 152 (470)
Q Consensus 122 ~pDlvi~D~~~-~~~~~vA~~~giP~v~~~~~ 152 (470)
++++||-..+. +++.-+|+++|+|.|.+.|+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 45677766555 89999999999999998775
No 257
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.05 E-value=27 Score=33.13 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=36.8
Q ss_pred cCCcceeecccCchhhHHhhh----cCCceecCCCccchhhhHHHHHhhhheeEEcCC--cccHHHHHHHHHHHhcc
Q 012151 359 HPAVGGFWTHSGWNSTLESMC----EGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW--KLERMEIERAIRRVMVE 429 (470)
Q Consensus 359 ~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~--~~~~~~l~~ai~~vl~~ 429 (470)
.+++ +|+=||-||+..|+. +++|++.+-. |- +.. .++++++.+++++++++
T Consensus 63 ~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~-----------------G~-lGFl~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 63 QADL--AIVVGGDGNMLGAARVLARYDIKVIGINR-----------------GN-LGFLTDLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEEC-----------------CC-CCcccccCHHHHHHHHHHHHcC
Confidence 3555 999999999999974 3778877432 21 111 45678888899888875
No 258
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=45.02 E-value=34 Score=31.73 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFS 56 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 56 (470)
...++++-.+|.|-..=..++|.+|.++|+.|+|++.+....
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 347999999999988889999999998899999998854433
No 259
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=44.86 E-value=18 Score=30.63 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=24.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
+|.++..+..|+ ++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 355555555454 79999999999999999863
No 260
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=44.73 E-value=41 Score=29.80 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
+.+|++.+.++-.|-....-++..|..+|++|+++...-..
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~ 124 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPI 124 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCH
Confidence 46899999999999999999999999999999999876443
No 261
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=44.27 E-value=56 Score=28.77 Aligned_cols=120 Identities=12% Similarity=0.028 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHh
Q 012151 298 KDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLES 377 (470)
Q Consensus 298 ~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~ea 377 (470)
.++=..+++.+.+.+..+++..++- ..+.+.|.++.+.++.- -||++ .=.++|..+..+|
T Consensus 65 ~~~d~~l~~~l~~~~~dlvvLAGyM--------rIL~~~fl~~~~grIlN----------IHPSL--LP~f~G~h~~~~A 124 (200)
T COG0299 65 EAFDRALVEALDEYGPDLVVLAGYM--------RILGPEFLSRFEGRILN----------IHPSL--LPAFPGLHAHEQA 124 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcchH--------HHcCHHHHHHhhcceEe----------cCccc--ccCCCCchHHHHH
Confidence 3345568999999998888776543 44667776665553321 27888 8889999999999
Q ss_pred hhcCCceecCCCcc--chhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 012151 378 MCEGVPMICQPYLP--DQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKE 444 (470)
Q Consensus 378 l~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~ 444 (470)
+.+|+..-++-.+. +..+-+-.+.++ -+ -+...-|.+.|.+.|... +- .-|-+..+.+.+
T Consensus 125 ~~aG~k~sG~TVH~V~e~vD~GpII~Q~-~V--pv~~~Dt~etl~~RV~~~-Eh---~lyp~~v~~~~~ 186 (200)
T COG0299 125 LEAGVKVSGCTVHFVTEGVDTGPIIAQA-AV--PVLPGDTAETLEARVLEQ-EH---RLYPLAVKLLAE 186 (200)
T ss_pred HHcCCCccCcEEEEEccCCCCCCeEEEE-ee--eecCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHh
Confidence 99999998877653 444433344442 11 111234888888888653 22 455555554444
No 262
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.12 E-value=27 Score=33.21 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=37.2
Q ss_pred cCCcceeecccCchhhHHhhh----cCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 359 HPAVGGFWTHSGWNSTLESMC----EGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 359 ~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
.+++ +|+=||=||+..|.+ .++|++++-... +|-.. .++.+++.+++++++++
T Consensus 68 ~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGFL~--~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 68 YCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQGH--------------LGFLT--QIPREYMTDKLLPVLEG 124 (296)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecCC--------------CeEee--ccCHHHHHHHHHHHHcC
Confidence 4555 999999999999964 478988854211 11111 45778888888888875
No 263
>PRK14099 glycogen synthase; Provisional
Probab=44.04 E-value=35 Score=35.09 Aligned_cols=131 Identities=11% Similarity=0.140 Sum_probs=66.4
Q ss_pred EEEEEcCcccccCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCcccCCCchhH---HHHhcCCc-eeeeccChHh-h
Q 012151 285 VVYISFGSVIAINKDGFLEIAWGVANS---RMPFLWVVRPGLVSGAEWVEPLPKGF---LEMLDGRG-CIVKWAPQQE-V 356 (470)
Q Consensus 285 ~I~vs~Gs~~~~~~~~~~~i~~al~~~---~~~~i~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~-~~~~~~p~~~-l 356 (470)
+++...|... +.+.+..+++|++.+ +.+++++ +.+. ..+.+.+ .++.++++ .+.++-.... +
T Consensus 296 ~li~~VgRL~--~~KG~d~Li~A~~~l~~~~~~lviv-G~G~-------~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~ 365 (485)
T PRK14099 296 LLLGVISRLS--WQKGLDLLLEALPTLLGEGAQLALL-GSGD-------AELEARFRAAAQAYPGQIGVVIGYDEALAHL 365 (485)
T ss_pred cEEEEEecCC--ccccHHHHHHHHHHHHhcCcEEEEE-ecCC-------HHHHHHHHHHHHHCCCCEEEEeCCCHHHHHH
Confidence 4444456654 334455566666543 4444443 3221 0011122 22334444 3456532222 2
Q ss_pred h-ccCCcceeec---ccCch-hhHHhhhcCCceecCCCcc--chhhhHHH---HHhhhheeEEcCCcccHHHHHHHHHH-
Q 012151 357 L-AHPAVGGFWT---HSGWN-STLESMCEGVPMICQPYLP--DQMVNARY---VSHFWRVGLHSEWKLERMEIERAIRR- 425 (470)
Q Consensus 357 L-~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~r---v~~~~G~G~~l~~~~~~~~l~~ai~~- 425 (470)
+ +.+++ |+. +=|.| +.+||+++|+|.|+....+ |--....- .+.. +.|...+. -++++|+++|.+
T Consensus 366 ~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~-~d~~~La~ai~~a 441 (485)
T PRK14099 366 IQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP-VTADALAAALRKT 441 (485)
T ss_pred HHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC-CCHHHHHHHHHHH
Confidence 3 34566 775 34444 7789999997766654322 21111000 0111 46877777 688999999997
Q ss_pred --Hhcc
Q 012151 426 --VMVE 429 (470)
Q Consensus 426 --vl~~ 429 (470)
+++|
T Consensus 442 ~~l~~d 447 (485)
T PRK14099 442 AALFAD 447 (485)
T ss_pred HHHhcC
Confidence 5666
No 264
>PRK00784 cobyric acid synthase; Provisional
Probab=43.83 E-value=2.9e+02 Score=28.41 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=27.9
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 17 RVILFPL-PFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 17 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
.|++..- ..-|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 3555534 3459999999999999999999998765
No 265
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=43.80 E-value=45 Score=28.39 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=25.4
Q ss_pred EEEEEcCcccccCHHHHHHHHHHHHhCCC
Q 012151 285 VVYISFGSVIAINKDGFLEIAWGVANSRM 313 (470)
Q Consensus 285 ~I~vs~Gs~~~~~~~~~~~i~~al~~~~~ 313 (470)
.+|+++||......+.++..+.++++.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999998887888889999988864
No 266
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=43.43 E-value=36 Score=30.08 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=24.1
Q ss_pred CCCcEEEeCCCc--cchHHHHhhcCCCeEEEeccc
Q 012151 121 SSPCCLITDAFW--FFTHTVAADFKLPTIVLQTCG 153 (470)
Q Consensus 121 ~~pDlvi~D~~~--~~~~~vA~~~giP~v~~~~~~ 153 (470)
..||+||.-.-. ..+..=|.++|||+|.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 489998755423 455666889999999987653
No 267
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=42.76 E-value=20 Score=33.00 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 012151 30 NPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 30 ~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
.-.-.|+++|+++||+|++++|.
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHHhcCCeEEEEEcc
Confidence 34678999999999999999984
No 268
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=42.69 E-value=72 Score=27.99 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=46.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCC-CCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHH
Q 012151 18 VILFPLPFQGHINPMLHLASILYSK--GFSVTIIHTD-FNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAI 94 (470)
Q Consensus 18 il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~-~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
++-+-..+-|-++-..+|+++|.++ |+.|.+-++. ...+...+.. ...+...-+|-+ ..
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~--~~~v~~~~~P~D----------~~------ 84 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL--PDRVDVQYLPLD----------FP------ 84 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG---GGG-SEEE---S----------SH------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC--CCCeEEEEeCcc----------CH------
Confidence 4444445569999999999999987 8888886653 3333333200 012333333311 11
Q ss_pred HhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccch--HHHHhhcCCCeEEEec
Q 012151 95 NGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFT--HTVAADFKLPTIVLQT 151 (470)
Q Consensus 95 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~--~~vA~~~giP~v~~~~ 151 (470)
..++..++.+ +||++|.-....|. ...|++.|||++.+.-
T Consensus 85 -----~~~~rfl~~~------------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 85 -----WAVRRFLDHW------------RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----HHHHHHHHHH--------------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -----HHHHHHHHHh------------CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 1223345665 88888866555554 4567788999999753
No 269
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=42.27 E-value=3.4e+02 Score=26.61 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=34.2
Q ss_pred cCCceeeeccChHh---hhccCCcceeecccC----chhhHHhhhcCCceecC
Q 012151 342 DGRGCIVKWAPQQE---VLAHPAVGGFWTHSG----WNSTLESMCEGVPMICQ 387 (470)
Q Consensus 342 ~~~~~~~~~~p~~~---lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~ 387 (470)
.+++.+.+-+|++. +|...++ |++-+= .-++.||..+|.|+|..
T Consensus 251 ~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 251 QDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred cCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 48888899999877 6777777 776543 34688999999999973
No 270
>PRK11519 tyrosine kinase; Provisional
Probab=41.97 E-value=4.9e+02 Score=28.34 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=32.3
Q ss_pred CCEEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 012151 15 GRRVILFPL--PFQGHINPMLHLASILYSKGFSVTIIHTDFNFS 56 (470)
Q Consensus 15 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 56 (470)
+.++++++. ++-|-..-...||..|+..|++|.++-.+....
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~ 568 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKG 568 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 345666555 466899999999999999999999997754433
No 271
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=41.88 E-value=30 Score=34.43 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=25.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 012151 18 VILFPLPFQGHINPMLHLASILYSKGFSVTII 49 (470)
Q Consensus 18 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~ 49 (470)
|+--+..+.|-..-++.|.+.|.+||++|.-+
T Consensus 4 vIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 4 VIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 33445556699999999999999999998653
No 272
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.54 E-value=1.5e+02 Score=27.20 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCcEEEeCCCccc---hHHHHhhcCCCeEE
Q 012151 122 SPCCLITDAFWFF---THTVAADFKLPTIV 148 (470)
Q Consensus 122 ~pDlvi~D~~~~~---~~~vA~~~giP~v~ 148 (470)
+-++.+.|..+.. +..+|...|||++.
T Consensus 149 ~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 149 ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 5699999987744 46889999999997
No 273
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=41.46 E-value=1.9e+02 Score=29.22 Aligned_cols=88 Identities=18% Similarity=0.261 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHH
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAI 94 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
..++++...+ .....+++.|.+-|-+|..+......+.... ++ .+.....|..
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~------------~~----~~~~~~~D~~------ 363 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK------------LP----VETVVIGDLE------ 363 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh------------CC----cCcEEeCCHH------
Confidence 4577776533 4678889999999999988777544332111 11 1100001111
Q ss_pred HhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEe
Q 012151 95 NGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQ 150 (470)
Q Consensus 95 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~ 150 (470)
.+++.+++ .++|++|... ....+|+++|||++.+.
T Consensus 364 ------~l~~~i~~------------~~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 ------DLEDLACA------------AGADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred ------HHHHHHhh------------cCCCEEEECc---chHHHHHHcCCCEEEec
Confidence 22233333 3899999885 45789999999999753
No 274
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=41.16 E-value=78 Score=25.00 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEec
Q 012151 28 HINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSF 73 (470)
Q Consensus 28 H~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~ 73 (470)
+=.-++.+|+.|.+.|+++. + ++.......+ .|+.+..+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~-A-T~gTa~~L~~-----~Gi~~~~v 48 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF-A-TGGTSRVLAD-----AGIPVRAV 48 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE-E-CcHHHHHHHH-----cCCceEEE
Confidence 34557899999999999983 4 4444455544 67776655
No 275
>PHA02754 hypothetical protein; Provisional
Probab=41.00 E-value=43 Score=22.73 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=20.5
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 012151 421 RAIRRVMVEAEGQEMRARIMHLKEKVDFC 449 (470)
Q Consensus 421 ~ai~~vl~~~~~~~~~~~a~~l~~~~~~~ 449 (470)
+.|.+++.+ ++|++..++++..+...
T Consensus 5 eEi~k~i~e---K~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 5 EEIPKAIME---KDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHH---hHHHHHHHHHHHHHhhC
Confidence 445666677 89999999999988764
No 276
>PRK05114 hypothetical protein; Provisional
Probab=40.93 E-value=77 Score=21.64 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 433 QEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 433 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
+.-.++++++.+.+.+. -||.+|+..+-+.|++
T Consensus 11 eeQQ~AVErIq~LMaqG----mSsgEAI~~VA~eiRe 43 (59)
T PRK05114 11 EQQQKAVERIQELMAQG----MSSGEAIALVAEELRA 43 (59)
T ss_pred HHHHHHHHHHHHHHHcc----ccHHHHHHHHHHHHHH
Confidence 34455666666666654 7777777777666653
No 277
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=40.85 E-value=28 Score=30.48 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=32.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
||++.-.++.|= .-...+.+.|.++|++|.++.++.-.+.+.
T Consensus 3 ~Ill~vtGsiaa-~~~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 3 NILLAVSGSIAA-YKAADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred EEEEEEeChHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 577766666454 458999999999999999999976655554
No 278
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=40.65 E-value=86 Score=20.78 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 433 QEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 433 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
+.-.+.++++.+.+.+. -|+.+|+..+-+.|++
T Consensus 11 eeQQ~AvE~Iq~LMaqG----mSsgEAI~~VA~~iRe 43 (51)
T PF03701_consen 11 EEQQQAVERIQELMAQG----MSSGEAIAIVAQEIRE 43 (51)
T ss_pred HHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHH
Confidence 34455666666666664 7777777777776664
No 279
>PRK06270 homoserine dehydrogenase; Provisional
Probab=40.45 E-value=2.1e+02 Score=27.88 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=38.1
Q ss_pred ChHhhhccCCcceeec------ccC---chhhHHhhhcCCceec---CCCccchhhhHHHHHhhhheeEEcC
Q 012151 352 PQQEVLAHPAVGGFWT------HSG---WNSTLESMCEGVPMIC---QPYLPDQMVNARYVSHFWRVGLHSE 411 (470)
Q Consensus 352 p~~~lL~~~~~~~~I~------HGG---~gs~~eal~~GvP~v~---~P~~~DQ~~na~rv~~~~G~G~~l~ 411 (470)
+..++|..+++..+|- |+| ..-+.+||.+|+++|+ -|+...-..-.+..+++ |+....+
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEEe
Confidence 5677887666555766 443 4456899999999999 47654333334445553 7766653
No 280
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=40.33 E-value=1e+02 Score=31.08 Aligned_cols=35 Identities=14% Similarity=-0.022 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
.||||++-.+++-| +|++.|.+-++-..+++.+.+
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 57899999999776 689999888865455444444
No 281
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.90 E-value=60 Score=30.16 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=34.8
Q ss_pred ceeecccCchhhHHhhh-cCCceecCCCccchhhhHHHHHhhhheeEEcCC--cccHHHHHHHHHHHhcc
Q 012151 363 GGFWTHSGWNSTLESMC-EGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW--KLERMEIERAIRRVMVE 429 (470)
Q Consensus 363 ~~~I~HGG~gs~~eal~-~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~--~~~~~~l~~ai~~vl~~ 429 (470)
.++|+=||-||+..|+. .++|++++- .| ++.. ..+.+++.+++++++++
T Consensus 43 d~vi~iGGDGT~L~a~~~~~~Pilgin-----------------~G-~lGfl~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 43 DLIIVVGGDGTVLKAAKKVGTPLVGFK-----------------AG-RLGFLSSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CEEEEECCcHHHHHHHHHcCCCEEEEe-----------------CC-CCccccccCHHHHHHHHHHHHcC
Confidence 34999999999999976 577777643 22 1222 45678888888888775
No 282
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=39.81 E-value=1.2e+02 Score=29.21 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=33.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
-|.=++.++.|-.--.+.||+.|++||..|.+++-....
T Consensus 51 ~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 51 CVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 455577889999999999999999999999999875443
No 283
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.35 E-value=34 Score=32.71 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=37.5
Q ss_pred cCCcceeecccCchhhHHhhhc----CCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 359 HPAVGGFWTHSGWNSTLESMCE----GVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 359 ~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
.+++ +|+=||-||+..|... ++|++++.+. .+|-.. ...++++.+++++++++
T Consensus 72 ~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA--EAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec--cCCHHHHHHHHHHHHcC
Confidence 4555 9999999999998653 8898886541 112111 35678888888888875
No 284
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=39.34 E-value=25 Score=33.60 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=31.3
Q ss_pred hhccCCcceeecccCchhhHHhhh----cCCceecCCCccc
Q 012151 356 VLAHPAVGGFWTHSGWNSTLESMC----EGVPMICQPYLPD 392 (470)
Q Consensus 356 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~D 392 (470)
.|..-+++++|.=||.+|...|.. +++|+|++|-+.|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 566778899999999999977753 7999999998766
No 285
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=38.65 E-value=38 Score=30.30 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=31.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 18 VILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 18 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
|++..+|+.|-.--.-.||++|.+++|+|...+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 67788899999999999999999999999876653
No 286
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=38.52 E-value=1.3e+02 Score=29.26 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeC
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGF-SVTIIHT 51 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~V~~~~~ 51 (470)
+..+|+++-.++-| -.+|+.|++.|+ +++++=.
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 35689999998876 678999999998 6666544
No 287
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.32 E-value=28 Score=32.64 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=37.2
Q ss_pred HhhhccCCcceeecccCchhhHHhhh----cCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhc
Q 012151 354 QEVLAHPAVGGFWTHSGWNSTLESMC----EGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMV 428 (470)
Q Consensus 354 ~~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~ 428 (470)
.++...+++ +|+=||-||+..|.+ .++|++++-.. .+|-.. ..+++++.+++.++++
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT--DIDPKNAYEQLEACLE 97 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc--cCCHHHHHHHHHHHHh
Confidence 444444566 999999999998755 36888875431 122111 3566777777777776
No 288
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=38.25 E-value=35 Score=29.74 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=30.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
||++.-.++ +...-...+.+.|.++|++|.++.++.-.+.+.
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 455555555 455667799999999999999999876555544
No 289
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=37.96 E-value=1.2e+02 Score=30.84 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=28.5
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 17 RVILFPL-PFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 17 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
+|++... .+.|-..-...|++.|+++|++|..+-+.
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 3555543 34589999999999999999999998663
No 290
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.63 E-value=1.5e+02 Score=25.27 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=62.0
Q ss_pred ChHhhh-ccCCcceeecccC---chhhHHhhhcCCceecCC-CccchhhhHHHHHhhhheeEEcCC-cccHHHHHHHHHH
Q 012151 352 PQQEVL-AHPAVGGFWTHSG---WNSTLESMCEGVPMICQP-YLPDQMVNARYVSHFWRVGLHSEW-KLERMEIERAIRR 425 (470)
Q Consensus 352 p~~~lL-~~~~~~~~I~HGG---~gs~~eal~~GvP~v~~P-~~~DQ~~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~ 425 (470)
+|..|+ .||++.+-+--.| .-|+.|.-.+|.=.+.== +..=+..|+++.++ .|.=-.+-- ..+.++|.++.++
T Consensus 64 ~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~r-FgfPfI~aVkg~~k~~Il~a~~~ 142 (176)
T COG3195 64 ERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVER-FGFPFIIAVKGNTKDTILAAFER 142 (176)
T ss_pred HHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHHh-cCCceEEeecCCCHHHHHHHHHH
Confidence 444433 3677632222222 346677777776544310 00116789999999 498766654 5789999999998
Q ss_pred HhccchhHHHHHHHHHHHHHHHH
Q 012151 426 VMVEAEGQEMRARIMHLKEKVDF 448 (470)
Q Consensus 426 vl~~~~~~~~~~~a~~l~~~~~~ 448 (470)
-+.|.+..+++..+.++.+..+.
T Consensus 143 Rl~n~~e~E~~tAl~eI~rIA~~ 165 (176)
T COG3195 143 RLDNDREQEFATALAEIERIALL 165 (176)
T ss_pred HhcccHHHHHHHHHHHHHHHHHH
Confidence 88876668888888888776654
No 291
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=37.51 E-value=52 Score=31.83 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCccch----------HHHHhhcCCCeEEE
Q 012151 121 SSPCCLITDAFWFFT----------HTVAADFKLPTIVL 149 (470)
Q Consensus 121 ~~pDlvi~D~~~~~~----------~~vA~~~giP~v~~ 149 (470)
.+||++|+.+.+..+ ..+.++++||+|.-
T Consensus 79 ~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 79 LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 399999999877332 13557899999973
No 292
>PRK12342 hypothetical protein; Provisional
Probab=37.42 E-value=60 Score=30.10 Aligned_cols=31 Identities=13% Similarity=-0.078 Sum_probs=24.2
Q ss_pred CCcEEEeCCCc------cchHHHHhhcCCCeEEEecc
Q 012151 122 SPCCLITDAFW------FFTHTVAADFKLPTIVLQTC 152 (470)
Q Consensus 122 ~pDlvi~D~~~------~~~~~vA~~~giP~v~~~~~ 152 (470)
.||+|++...+ .-+..+|+.+|+|++.+...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 69999986544 22689999999999986543
No 293
>PRK13604 luxD acyl transferase; Provisional
Probab=37.38 E-value=65 Score=30.79 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIH 50 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 50 (470)
+...++++.+..++-.-+..+|+.|.++|..|..+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 446777788887887779999999999999988753
No 294
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=37.12 E-value=29 Score=34.52 Aligned_cols=65 Identities=15% Similarity=0.025 Sum_probs=43.3
Q ss_pred hhccCCcceeecccCchhhHHhhh-------c--CCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHH
Q 012151 356 VLAHPAVGGFWTHSGWNSTLESMC-------E--GVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRV 426 (470)
Q Consensus 356 lL~~~~~~~~I~HGG~gs~~eal~-------~--GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~v 426 (470)
.|..-+++++|.=||-||..-|.. + |+|+|++|-+.|-.. .|.-..+-.....+.+.++|+++
T Consensus 107 ~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl--------~~td~t~Gf~TA~~~~~~ai~~l 178 (403)
T PRK06555 107 RLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDV--------VPIRQSLGAWTAAEQGARFFDNV 178 (403)
T ss_pred HHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCC--------CCccCCcCHHHHHHHHHHHHHHH
Confidence 577789999999999999876633 3 899999999888654 12222222233445555566555
Q ss_pred hc
Q 012151 427 MV 428 (470)
Q Consensus 427 l~ 428 (470)
..
T Consensus 179 ~~ 180 (403)
T PRK06555 179 IN 180 (403)
T ss_pred HH
Confidence 44
No 295
>PLN02939 transferase, transferring glycosyl groups
Probab=36.98 E-value=62 Score=36.00 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCC-----cc-ChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 14 NGRRVILFPLPF-----QG-HINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 14 ~~~~il~~~~~~-----~G-H~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
++|+|++++.-. .| =-.-.-.|.++|+++||+|.+++|..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 578999987532 22 23346689999999999999999953
No 296
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=36.90 E-value=1.3e+02 Score=30.42 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCccchHHHHhhcCCCeEEEe
Q 012151 121 SSPCCLITDAFWFFTHTVAADFKLPTIVLQ 150 (470)
Q Consensus 121 ~~pDlvi~D~~~~~~~~vA~~~giP~v~~~ 150 (470)
.+||++|.+. ....+|.++|+|++.++
T Consensus 370 ~~pdliig~~---~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNS---HGRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECc---hhHHHHHhcCCCEEEec
Confidence 3899999996 44788889999998754
No 297
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=36.87 E-value=1.9e+02 Score=27.38 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=68.6
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCC
Q 012151 303 EIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGV 382 (470)
Q Consensus 303 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~Gv 382 (470)
.+++.+++.+..+++..+.. ..+++.+.+..+.++.- -||++ .=...|.+....|+.+|+
T Consensus 160 ~~~~~l~~~~~Dlivlagym--------~il~~~~l~~~~~~iiN----------iHpSl--LP~f~G~~~~~~ai~~G~ 219 (289)
T PRK13010 160 QILDLIETSGAELVVLARYM--------QVLSDDLSRKLSGRAIN----------IHHSF--LPGFKGARPYHQAHARGV 219 (289)
T ss_pred HHHHHHHHhCCCEEEEehhh--------hhCCHHHHhhccCCcee----------eCccc--CCCCCCCCHHHHHHHcCC
Confidence 45556666666666666443 23555554443332221 13333 333458899999999999
Q ss_pred ceecCCCcc--chhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 012151 383 PMICQPYLP--DQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLK 443 (470)
Q Consensus 383 P~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~ 443 (470)
...++-.+. +..+.+.-+.+. -+- +..+-|.++|.+.+.++-- .-|-+..+.+.
T Consensus 220 k~tG~TvH~v~~~lD~GpII~Q~-~v~--V~~~dt~e~L~~r~~~~E~----~~l~~ai~~~~ 275 (289)
T PRK13010 220 KLIGATAHFVTDDLDEGPIIEQD-VER--VDHSYSPEDLVAKGRDVEC----LTLARAVKAFI 275 (289)
T ss_pred CeEEEEEEEEcCCCCCCCceEEE-EEE--cCCCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 999888664 566666666664 332 3334578888888877533 45665555543
No 298
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=36.74 E-value=52 Score=30.66 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=23.3
Q ss_pred CeEEEEEcCcccccCHH-HHHHHHHHHHhC--CCCEEEEEcC
Q 012151 283 KSVVYISFGSVIAINKD-GFLEIAWGVANS--RMPFLWVVRP 321 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~-~~~~i~~al~~~--~~~~i~~~~~ 321 (470)
|.++++||||......+ .+..+.+.+++. +..+.|.+..
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 35788899998774444 677777777664 6778777643
No 299
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=36.69 E-value=35 Score=31.00 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 28 HINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 28 H~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
|+..|.+.|++|.++|++|.++..+.
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 57789999999999999999988743
No 300
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=36.60 E-value=1.1e+02 Score=32.22 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=22.0
Q ss_pred cceeecccCch------hhHHhhhcCCceecCC
Q 012151 362 VGGFWTHSGWN------STLESMCEGVPMICQP 388 (470)
Q Consensus 362 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (470)
..++++|.|-| .+.+|.+.++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 33489998854 7889999999999984
No 301
>PRK13768 GTPase; Provisional
Probab=36.58 E-value=96 Score=28.69 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=31.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
.+++...++.|-..-...++..|..+|++|.++-.+.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 5777777788999999999999999999999987654
No 302
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.16 E-value=45 Score=31.27 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=36.3
Q ss_pred cCCcceeecccCchhhHHhhhc-CCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 359 HPAVGGFWTHSGWNSTLESMCE-GVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 359 ~~~~~~~I~HGG~gs~~eal~~-GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
.+++ +|+=||-||+..|... .+|++++-.. .+|-.. ..+.+++.+++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG--------------GLGFLT--EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCccCc--ccCHHHHHHHHHHHHcC
Confidence 3555 9999999999999873 5576664221 111111 46778888999988885
No 303
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.12 E-value=56 Score=28.30 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=20.7
Q ss_pred CCcEEEeCCCccc--hHHHHhhcCCCeEEEe
Q 012151 122 SPCCLITDAFWFF--THTVAADFKLPTIVLQ 150 (470)
Q Consensus 122 ~pDlvi~D~~~~~--~~~vA~~~giP~v~~~ 150 (470)
+||+||....... ....-+..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999998754322 3344578999998875
No 304
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=36.12 E-value=67 Score=28.89 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
++.+|++.+.++-.|-....=++-.|..+|++|+++...-.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp 127 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVP 127 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 35689999999999999999999999999999999987543
No 305
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=35.72 E-value=30 Score=33.30 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=31.4
Q ss_pred hhccCCcceeecccCchhhHHhhh---cCCceecCCCccc
Q 012151 356 VLAHPAVGGFWTHSGWNSTLESMC---EGVPMICQPYLPD 392 (470)
Q Consensus 356 lL~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D 392 (470)
.|..-+++++|.=||-+|..-|.. +|+|+|++|-+.|
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 466788999999999999887754 5999999998765
No 306
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=35.65 E-value=66 Score=28.18 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecC--CCCCC
Q 012151 30 NPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFP--DGFSE 79 (470)
Q Consensus 30 ~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~--~~~~~ 79 (470)
.-+..||+.|.+.|+++. ++........+ .|+.+..+. .++|+
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e-----~GI~v~~V~k~TgfpE 55 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKE-----AGIPVTDVSDITGFPE 55 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHH-----cCCeEEEhhhccCCcH
Confidence 447899999999999984 45456666665 788777765 34554
No 307
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=35.41 E-value=63 Score=30.03 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=31.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
|+|.+..=||-|-..-...||..|+++|++|.++=-+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 4677887677799999999999999999999988544
No 308
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=35.36 E-value=43 Score=26.76 Aligned_cols=31 Identities=3% Similarity=0.192 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 29 INPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 29 ~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
+.|++.+.-.+.-+||+++++-|..+...+.
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhcccc
Confidence 4577778888888999999999988877655
No 309
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=35.08 E-value=2.4e+02 Score=22.66 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=30.5
Q ss_pred hhhhcCCCCCCeEEEEEcCccccc-CHHHHHHHHHHHHhCCCCEEEEE
Q 012151 273 SISWLDKQTPKSVVYISFGSVIAI-NKDGFLEIAWGVANSRMPFLWVV 319 (470)
Q Consensus 273 l~~~l~~~~~~~~I~vs~Gs~~~~-~~~~~~~i~~al~~~~~~~i~~~ 319 (470)
..+|+... -+++|.|-.... +++.+..+++.+.+.+.-.+.+-
T Consensus 36 ~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~ 79 (123)
T PF07905_consen 36 PSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIK 79 (123)
T ss_pred HHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 66788633 466777777665 66778889999999887665553
No 310
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.06 E-value=54 Score=31.23 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=37.4
Q ss_pred CCcceeecccCchhhHHhhh----cCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 360 PAVGGFWTHSGWNSTLESMC----EGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 360 ~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
+++ +|+=||-||+.+++. .++|++++... + +|-. . ..+++++.++|++++++
T Consensus 63 ~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~---lGFl-~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 63 CDL--VIVVGGDGSLLGAARALARHNVPVLGINRG-----------R---LGFL-T-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------c---cccc-c-cCCHHHHHHHHHHHHcC
Confidence 455 999999999999875 47788886542 1 1211 1 46778899999998875
No 311
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=35.03 E-value=2.9e+02 Score=26.19 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=69.6
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCC
Q 012151 303 EIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGV 382 (470)
Q Consensus 303 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~Gv 382 (470)
.+++.+++.+.++++..+.. ..+++.+.+..+.++.= -||++ .=.+.|.+.+..|+.+|+
T Consensus 156 ~~~~~l~~~~~Dlivlagy~--------~il~~~~l~~~~~~iiN----------iHpSL--LP~~rG~~~~~~ai~~G~ 215 (286)
T PRK13011 156 QVLDVVEESGAELVVLARYM--------QVLSPELCRKLAGRAIN----------IHHSF--LPGFKGAKPYHQAYERGV 215 (286)
T ss_pred HHHHHHHHhCcCEEEEeChh--------hhCCHHHHhhccCCeEE----------ecccc--CCCCCCCcHHHHHHHCCC
Confidence 35556666666666666443 34556655444332221 14444 444568899999999999
Q ss_pred ceecCCCcc--chhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 012151 383 PMICQPYLP--DQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKE 444 (470)
Q Consensus 383 P~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~ 444 (470)
..-++-.+. +..+-+.-+.+. - +.+...-|.++|.+.+.++ +- +-|-+.++.+.+
T Consensus 216 ~~tG~TvH~v~~~~D~G~Ii~Q~-~--v~I~~~dt~~~L~~r~~~~-E~---~~~~~ai~~~~~ 272 (286)
T PRK13011 216 KLIGATAHYVTDDLDEGPIIEQD-V--ERVDHAYSPEDLVAKGRDV-EC---LTLARAVKAHIE 272 (286)
T ss_pred CeEEEEEEEEcCCCcCCCcEEEE-E--EEcCCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHh
Confidence 998888664 455555555553 2 2333346889999888774 32 466666555543
No 312
>PRK07206 hypothetical protein; Provisional
Probab=34.90 E-value=1.6e+02 Score=29.31 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=24.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
+|+++-.... ...+++++.++|+++..+....
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 6888776433 3568999999999998888743
No 313
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=34.71 E-value=65 Score=25.66 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=36.0
Q ss_pred hhcCCceecCCCccchhhhHHHHHhhhheeEEc-----------CC----cccHHHHHHHHHHHh
Q 012151 378 MCEGVPMICQPYLPDQMVNARYVSHFWRVGLHS-----------EW----KLERMEIERAIRRVM 427 (470)
Q Consensus 378 l~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l-----------~~----~~~~~~l~~ai~~vl 427 (470)
++|+.++.+.|..+|.-.|+-|+.+ |.-..+ .+ +.|.|++..+|+-+.
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaq--G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M~ 122 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQ--GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFMA 122 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHh--chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 5677789999999999999999988 443332 22 478888888886543
No 314
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=34.63 E-value=1.1e+02 Score=32.15 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=22.9
Q ss_pred cCCcceeecccCch------hhHHhhhcCCceecCC
Q 012151 359 HPAVGGFWTHSGWN------STLESMCEGVPMICQP 388 (470)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (470)
.+.+ +++|.|-| .+.+|...++|+|++-
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3455 99999866 5789999999999984
No 315
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=34.56 E-value=65 Score=29.95 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=32.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
|.|.+..=+|-|...-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4678887778899999999999999999999988654
No 316
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.41 E-value=90 Score=29.86 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=23.7
Q ss_pred cCCcceeecccCchhhHHhhhc----CCceecCCC
Q 012151 359 HPAVGGFWTHSGWNSTLESMCE----GVPMICQPY 389 (470)
Q Consensus 359 ~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~ 389 (470)
.+++ +|+-||-||+.+++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 3455 9999999999999764 789888765
No 317
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=34.31 E-value=2.9e+02 Score=24.47 Aligned_cols=55 Identities=5% Similarity=-0.002 Sum_probs=30.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCCcccccccCCCCCeeEEecC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKG--FSVTIIHTDFNFSSTNYFSCNYPHFDFHSFP 74 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 74 (470)
+||++++.+. |+. +.+|.+.+.+.+ ++|.++.+......... .+...|+.+..++
T Consensus 2 ~ki~vl~sg~-gs~--~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~-~a~~~gIp~~~~~ 58 (200)
T PRK05647 2 KRIVVLASGN-GSN--LQAIIDACAAGQLPAEIVAVISDRPDAYGLE-RAEAAGIPTFVLD 58 (200)
T ss_pred ceEEEEEcCC-Chh--HHHHHHHHHcCCCCcEEEEEEecCccchHHH-HHHHcCCCEEEEC
Confidence 4688888877 433 446677777654 67777655432111110 0122577776654
No 318
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=34.26 E-value=59 Score=31.14 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEe
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHS 72 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~ 72 (470)
.|+|+++-.++.| ..+|..|++.||+|+++..... +.... .|+....
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~~-~~~~~-----~g~~~~~ 51 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSDY-EAVRE-----NGLQVDS 51 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCH-HHHHh-----CCeEEEe
Confidence 4789999777765 4567889999999999987542 33333 5665543
No 319
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=34.18 E-value=19 Score=30.77 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC--CcccccccCCCCCeeEEecC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN--FSSTNYFSCNYPHFDFHSFP 74 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~--~~~~~~~~~~~~gi~~~~~~ 74 (470)
..+|.++-++++||. -|.-|++.|++|++..-+.. .+..++ .|++..++.
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~-----~Gf~v~~~~ 55 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKA-----DGFEVMSVA 55 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHH-----TT-ECCEHH
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHH-----CCCeeccHH
Confidence 358999999999985 57889999999999877654 334444 788776654
No 320
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=34.10 E-value=1.3e+02 Score=29.45 Aligned_cols=97 Identities=12% Similarity=0.148 Sum_probs=53.2
Q ss_pred eEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCch-hHHH-HhcC-Cc-ee------------
Q 012151 284 SVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPK-GFLE-MLDG-RG-CI------------ 347 (470)
Q Consensus 284 ~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~-~~~~-~~~~-~~-~~------------ 347 (470)
.+++.+-||.....|. .++++.|++.+++++|+........ +.+|. ++.- .++. .+ +.
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~----~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 76 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEK----TIIEKENIPYYSISSGKLRRYFDLKNIKDPFLV 76 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcccc----ccCcccCCcEEEEeccCcCCCchHHHHHHHHHH
Confidence 4777788887753332 2466777777888888864443211 11221 1100 0000 00 00
Q ss_pred -eeccChHhhhc--cCCcceeecccCchh---hHHhhhcCCceecCC
Q 012151 348 -VKWAPQQEVLA--HPAVGGFWTHSGWNS---TLESMCEGVPMICQP 388 (470)
Q Consensus 348 -~~~~p~~~lL~--~~~~~~~I~HGG~gs---~~eal~~GvP~v~~P 388 (470)
..+.--..++. .|++ +|++||+-| +..|...|+|+++.=
T Consensus 77 ~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 77 MKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred HHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 00001112344 3666 999999986 899999999998743
No 321
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=33.99 E-value=47 Score=29.03 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=29.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 18 VILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 18 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
|++.-.++.|-+ =...|.+.|.++|++|.++.++.-.+.+.
T Consensus 2 illgvtGsiaa~-ka~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 2 IVVAMTGASGVI-YGIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred EEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 333333443443 45899999999999999999976666654
No 322
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=33.85 E-value=61 Score=30.44 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=37.3
Q ss_pred cchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCc----cc-hHHHHhhcCCCeEEEecc
Q 012151 98 CIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFW----FF-THTVAADFKLPTIVLQTC 152 (470)
Q Consensus 98 ~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~----~~-~~~vA~~~giP~v~~~~~ 152 (470)
-.+.+++++++++++++ +.=+||.|.|+ ++ ...+|.+.+||++++.-.
T Consensus 131 ~~p~IKE~vR~~I~~A~-------kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 131 GQPHIKEVVRRMIQQAQ-------KVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred CCCCHHHHHHHHHHHhc-------ceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 35678888888888774 89999999877 22 457788999999987643
No 323
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=33.84 E-value=1.9e+02 Score=29.22 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCccchHHHHhhcCCCeEEEe
Q 012151 121 SSPCCLITDAFWFFTHTVAADFKLPTIVLQ 150 (470)
Q Consensus 121 ~~pDlvi~D~~~~~~~~vA~~~giP~v~~~ 150 (470)
.+||++|.+. ....+|.++|||++.+.
T Consensus 371 ~~~dliiG~s---~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNS---YGRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECc---hhHHHHHHcCCCEEEec
Confidence 3899999996 35788999999998754
No 324
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=33.58 E-value=59 Score=27.63 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
+..+|+++-.+.- ....++.|.+.|++|+++.++..
T Consensus 12 ~~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~~~ 47 (157)
T PRK06719 12 HNKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPEIC 47 (157)
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCccC
Confidence 3567888866653 37789999999999999976433
No 325
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=33.24 E-value=77 Score=30.04 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=34.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
|+|.+.-=||-|-..-...||..|+++|++|.++=.+...
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 5688888899999999999999999999999998765443
No 326
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=33.23 E-value=98 Score=24.69 Aligned_cols=37 Identities=24% Similarity=0.145 Sum_probs=33.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
+|++..-++.|-......|++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999988765
No 327
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=33.09 E-value=69 Score=30.22 Aligned_cols=30 Identities=13% Similarity=0.387 Sum_probs=24.1
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012151 294 IAINKDGFLEIAWGVANSRMPFLWVVRPGL 323 (470)
Q Consensus 294 ~~~~~~~~~~i~~al~~~~~~~i~~~~~~~ 323 (470)
+..+.+..+.+.+|+.....+.||.+.++.
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ 73 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGY 73 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcC
Confidence 334566688899999999999999997763
No 328
>PRK08322 acetolactate synthase; Reviewed
Probab=33.04 E-value=1.3e+02 Score=31.51 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.1
Q ss_pred cceeecccCch------hhHHhhhcCCceecCC
Q 012151 362 VGGFWTHSGWN------STLESMCEGVPMICQP 388 (470)
Q Consensus 362 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (470)
..++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 33489998855 7889999999999985
No 329
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=32.85 E-value=3e+02 Score=25.65 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=37.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFS 78 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 78 (470)
+++|+++.+++...-. ..+..|.+.|.+|.++.......... ....+....+|.+..
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~----~l~~~DgLvipGGfs 59 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERK----SVSDYDCLVIPGGFS 59 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecccccccc----chhhCCEEEECCCCC
Confidence 3689999999886443 55788888999999887643211111 124677777776643
No 330
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.76 E-value=49 Score=30.89 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=35.5
Q ss_pred CCcceeecccCchhhHHhhhc-----CCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 360 PAVGGFWTHSGWNSTLESMCE-----GVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 360 ~~~~~~I~HGG~gs~~eal~~-----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
+++ +|+=||-||+..|+.. .+|++++-..+ .+|-. . +.+.+++.+++++++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL-~-~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY-C-DFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc-c-cCCHHHHHHHHHHHHcC
Confidence 455 9999999999999874 56766643310 11111 1 45778888888888875
No 331
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=32.76 E-value=1.2e+02 Score=31.06 Aligned_cols=120 Identities=17% Similarity=0.075 Sum_probs=71.1
Q ss_pred HHHHhcCCceeeeccC-hHh--hhccCCcceeecc-----cCchhhHHhhhcCCceecCCCcc------chhhhHHHHHh
Q 012151 337 FLEMLDGRGCIVKWAP-QQE--VLAHPAVGGFWTH-----SGWNSTLESMCEGVPMICQPYLP------DQMVNARYVSH 402 (470)
Q Consensus 337 ~~~~~~~~~~~~~~~p-~~~--lL~~~~~~~~I~H-----GG~gs~~eal~~GvP~v~~P~~~------DQ~~na~rv~~ 402 (470)
+.++.++++.+.-|.+ ... +++-+++ ++-- ||. |=++|+++|.+-|+.+..+ |-..++ ...
T Consensus 343 la~~~~~~~~~~i~~~~~la~~i~agaD~--~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~ 417 (487)
T COG0297 343 LASRHPGRVLVVIGYDEPLAHLIYAGADV--ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQG 417 (487)
T ss_pred HHHhcCceEEEEeeecHHHHHHHHhcCCE--EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccC
Confidence 4455566666665544 333 4444454 5543 443 5678999999888888754 433333 556
Q ss_pred hhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 403 FWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 403 ~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
. |.|..... .+++.++.++++.+.= |+..-..++...+.++...-+-.+.+++-++..+
T Consensus 418 ~-gtGf~f~~-~~~~~l~~al~rA~~~-----y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~ 476 (487)
T COG0297 418 V-GTGFLFLQ-TNPDHLANALRRALVL-----YRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYK 476 (487)
T ss_pred c-eeEEEEec-CCHHHHHHHHHHHHHH-----hhCCHHHHHHHHHhhcccccCchhHHHHHHHHHH
Confidence 4 88888888 5999999999987652 3333333444444443333444455555544443
No 332
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=32.48 E-value=37 Score=32.77 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=31.1
Q ss_pred hhccCCcceeecccCchhhHHhhh---cCCceecCCCccc
Q 012151 356 VLAHPAVGGFWTHSGWNSTLESMC---EGVPMICQPYLPD 392 (470)
Q Consensus 356 lL~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D 392 (470)
.|..-+++++|.=||.+|...|.. .|+|+|++|-+.|
T Consensus 89 ~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 89 NLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 456678899999999999987754 5999999998765
No 333
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=32.43 E-value=3.7e+02 Score=26.54 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=33.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFS 56 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 56 (470)
--+++.--|+.|--.-++.+|..+.++|..|.|++.+...+
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~ 123 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPE 123 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHH
Confidence 35677777788999999999999999999999998864433
No 334
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=32.16 E-value=82 Score=27.09 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
..+|++++.++. .=-=-+.+|+.|.++|++|+++..
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 458999998873 122368899999999999999443
No 335
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=32.15 E-value=55 Score=33.45 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=36.0
Q ss_pred cceeecccCchhhHHhhhc----CCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 362 VGGFWTHSGWNSTLESMCE----GVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 362 ~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
++++|+=||-||++.|... ++|++++-+. .+|-.. .++.+++.++|.+++++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G--------------~LGFLt--~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPFSMG--------------SLGFMT--PFHSEQYRDCLDAILKG 318 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------Ccceec--ccCHHHHHHHHHHHHcC
Confidence 3449999999999999764 5677765210 122211 46778888999888875
No 336
>PTZ00445 p36-lilke protein; Provisional
Probab=31.75 E-value=2.3e+02 Score=25.55 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=23.3
Q ss_pred cChHH-HHHHHHHHHhCCCeEEEEeCCCC
Q 012151 27 GHINP-MLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 27 GH~~p-~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
+|+.| +..+.++|.+.|..|+++|....
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 45666 88999999999999999998544
No 337
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=31.65 E-value=59 Score=31.18 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=30.2
Q ss_pred CEEEEEcCCCc---cChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 16 RRVILFPLPFQ---GHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 16 ~~il~~~~~~~---GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
|+|+|+.-|-. -+...+..|.++.++|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 45677665432 35667899999999999999999996443
No 338
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=31.61 E-value=98 Score=25.55 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=27.9
Q ss_pred EEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 17 RVILFP-LPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 17 ~il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
++.++- .+..--+.|..-++...++.|++|+++.+
T Consensus 4 k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 4 KLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 344443 44457899999999999999999999988
No 339
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=31.60 E-value=52 Score=27.06 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=25.8
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 27 GHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 27 GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
-.+--.+=|+..|.++||+|++++++.-..+++
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 556668889999999999999999976655554
No 340
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.54 E-value=59 Score=23.01 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 012151 32 MLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 32 ~l~La~~L~~rGh~V~~~~~~ 52 (470)
-+..|..|+++|++|+++-..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 367889999999999998864
No 341
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=31.21 E-value=3.3e+02 Score=23.14 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=73.2
Q ss_pred EEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeec
Q 012151 288 ISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWT 367 (470)
Q Consensus 288 vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~ 367 (470)
|-+||.+ +.+..+.+...|+.++.++=+.+-. ..+.|+.+.+.. -. .....++.||.
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~S--------aHRtp~~~~~~~----------~~---a~~~g~~viIa 59 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVS--------AHRTPELMLEYA----------KE---AEERGIKVIIA 59 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEEC--------cccCHHHHHHHH----------HH---HHHCCCeEEEE
Confidence 3456665 6677888889999988776444432 234666543211 11 11112233888
Q ss_pred ccCchhhHH---hhhcCCceecCCCccc--hhhhH-HHHHhhh--h--eeEEc-CCcccHHHHHHHHHHHhccchhHHHH
Q 012151 368 HSGWNSTLE---SMCEGVPMICQPYLPD--QMVNA-RYVSHFW--R--VGLHS-EWKLERMEIERAIRRVMVEAEGQEMR 436 (470)
Q Consensus 368 HGG~gs~~e---al~~GvP~v~~P~~~D--Q~~na-~rv~~~~--G--~G~~l-~~~~~~~~l~~ai~~vl~~~~~~~~~ 436 (470)
-+|...-.- |-..-+|+|.+|.... ....+ .-..+ + | ++... +...++-.++..|-. +.| +.++
T Consensus 60 ~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vq-mP~gvpvatv~I~~~~nAa~~AaqIl~-~~d---~~l~ 134 (156)
T TIGR01162 60 GAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQ-MPSGVPVATVAIGNAGNAALLAAQILG-IKD---PELA 134 (156)
T ss_pred eCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhc-CCCCCeeEEEEcCChhHHHHHHHHHHc-CCC---HHHH
Confidence 777542222 2234689999998542 11111 22333 2 3 22222 224455555555422 345 7889
Q ss_pred HHHHHHHHHHHHHH
Q 012151 437 ARIMHLKEKVDFCL 450 (470)
Q Consensus 437 ~~a~~l~~~~~~~~ 450 (470)
++.+.++++.++.+
T Consensus 135 ~kl~~~r~~~~~~v 148 (156)
T TIGR01162 135 EKLKEYRENQKEEV 148 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888887653
No 342
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=30.97 E-value=88 Score=29.07 Aligned_cols=31 Identities=10% Similarity=-0.105 Sum_probs=24.1
Q ss_pred CCcEEEeCCCc------cchHHHHhhcCCCeEEEecc
Q 012151 122 SPCCLITDAFW------FFTHTVAADFKLPTIVLQTC 152 (470)
Q Consensus 122 ~pDlvi~D~~~------~~~~~vA~~~giP~v~~~~~ 152 (470)
.||+|++...+ .-+..+|+.+|+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 79999976444 24678999999999986543
No 343
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.88 E-value=1.3e+02 Score=20.32 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 012151 434 EMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHILS 469 (470)
Q Consensus 434 ~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (470)
.-.++++++++.+.+. -||.+|+..+-..|++
T Consensus 12 qQQ~AVE~Iq~lMaeG----mSsGEAIa~VA~elRe 43 (60)
T COG3140 12 QQQKAVERIQELMAEG----MSSGEAIALVAQELRE 43 (60)
T ss_pred HHHHHHHHHHHHHHcc----ccchhHHHHHHHHHHH
Confidence 3445555555555544 6677777666666553
No 344
>PRK14071 6-phosphofructokinase; Provisional
Probab=30.67 E-value=40 Score=33.13 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=30.4
Q ss_pred hhccCCcceeecccCchhhHHhhh----cCCceecCCCccc
Q 012151 356 VLAHPAVGGFWTHSGWNSTLESMC----EGVPMICQPYLPD 392 (470)
Q Consensus 356 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~D 392 (470)
.|..-+++++|.=||.+|..-|.. +|+|+|++|-+.|
T Consensus 102 ~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTID 142 (360)
T PRK14071 102 GYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTID 142 (360)
T ss_pred HHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccccc
Confidence 566778999999999999866643 4999999998765
No 345
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=30.67 E-value=1e+02 Score=31.18 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFS 56 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 56 (470)
+..|+++..++.|-..-+..||..|.++|++|.++..+.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 457888888899999999999999999999999999876544
No 346
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=30.49 E-value=1.2e+02 Score=26.04 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCcccccCHHHHHHHHHHHHhCC
Q 012151 281 TPKSVVYISFGSVIAINKDGFLEIAWGVANSR 312 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~ 312 (470)
+.+..+|+++||-...+.+.++..+..+++.+
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 44568999999998766677777777777643
No 347
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=30.06 E-value=60 Score=27.18 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCcceeecccCch------hhHHhhhcCCceecCCCc
Q 012151 360 PAVGGFWTHSGWN------STLESMCEGVPMICQPYL 390 (470)
Q Consensus 360 ~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~~ 390 (470)
+.+ +++|+|.| .+.+|...++|+|++.-.
T Consensus 60 ~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~ 94 (155)
T cd07035 60 PGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITGQ 94 (155)
T ss_pred CEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 445 88887744 678889999999999643
No 348
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.01 E-value=59 Score=30.61 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=34.0
Q ss_pred ceeecccCchhhHHhhh---cCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 363 GGFWTHSGWNSTLESMC---EGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 363 ~~~I~HGG~gs~~eal~---~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
.++|.-||-||+.+++. .++|+++++...- |-.. .++++++.+++.+++++
T Consensus 59 d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~l--------------GFl~--~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 59 DFIIAIGGDGTILRIEHKTKKDIPILGINMGTL--------------GFLT--EVEPEETFFALSRLLEG 112 (277)
T ss_pred CEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCCC--------------Cccc--cCCHHHHHHHHHHHHcC
Confidence 34999999999999873 4568888775320 1111 34567777777777764
No 349
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=29.81 E-value=4.5e+02 Score=24.30 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=27.8
Q ss_pred CEEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 16 RRVILFPLP--FQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 16 ~~il~~~~~--~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
.+++.++.+ +-|-..-...||..|++.|++|.++=.+
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 444444443 4478888999999999999999998654
No 350
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.37 E-value=1e+02 Score=26.77 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
+..+++...+|.|-..=..++|+++..+|+.|.|+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 457999999999988889999999999999999987643
No 351
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=29.31 E-value=5.8e+02 Score=25.41 Aligned_cols=59 Identities=25% Similarity=0.174 Sum_probs=37.1
Q ss_pred eecccCchhhHHhhhcCCceec--CCCccc------hhhhHHHHHhhhheeEEcCC--cccHHHHHHHHHHHhcc
Q 012151 365 FWTHSGWNSTLESMCEGVPMIC--QPYLPD------QMVNARYVSHFWRVGLHSEW--KLERMEIERAIRRVMVE 429 (470)
Q Consensus 365 ~I~HGG~gs~~eal~~GvP~v~--~P~~~D------Q~~na~rv~~~~G~G~~l~~--~~~~~~l~~ai~~vl~~ 429 (470)
+-|+ |..++..|+.+|.|+-. ++..+| =..|+.++.+. ..+. .++.++|..+|.+++.|
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~-----~~d~vvvV~~~ei~aaI~~l~ed 316 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQK-----LVDRVVVVEDDEIAAAILRLFED 316 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHh-----cCceEEEeccHHHHHHHHHHHHh
Confidence 4444 45677888888877632 112222 23456666663 2333 57889999999999998
No 352
>PRK03202 6-phosphofructokinase; Provisional
Probab=29.31 E-value=42 Score=32.36 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=31.3
Q ss_pred hhccCCcceeecccCchhhHHhhh---cCCceecCCCccc
Q 012151 356 VLAHPAVGGFWTHSGWNSTLESMC---EGVPMICQPYLPD 392 (470)
Q Consensus 356 lL~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D 392 (470)
.|..-+++++|.=||.+|..-|.. +|+|+|++|-+.|
T Consensus 88 ~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTID 127 (320)
T PRK03202 88 NLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTID 127 (320)
T ss_pred HHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccccc
Confidence 466678899999999999987754 5999999998776
No 353
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=29.22 E-value=87 Score=29.99 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=23.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012151 296 INKDGFLEIAWGVANSRMPFLWVVRPGL 323 (470)
Q Consensus 296 ~~~~~~~~i~~al~~~~~~~i~~~~~~~ 323 (470)
.+.+....+.+|+.....+.||.+.++.
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 77 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGD 77 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCccc
Confidence 4556678899999999999999987763
No 354
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=29.16 E-value=1.2e+02 Score=24.75 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHhCCCeE-EEEeC
Q 012151 28 HINPMLHLASILYSKGFSV-TIIHT 51 (470)
Q Consensus 28 H~~p~l~La~~L~~rGh~V-~~~~~ 51 (470)
...-.+.+|+.+.++||+| .++-.
T Consensus 16 ~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 16 QASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 4456888999999999984 66554
No 355
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.10 E-value=1.1e+02 Score=29.64 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=56.9
Q ss_pred CEEEEEcCCCcc-----ChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHH
Q 012151 16 RRVILFPLPFQG-----HINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVF 90 (470)
Q Consensus 16 ~~il~~~~~~~G-----H~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 90 (470)
..|+|.|..+.| -..-+..|++.|.++|.+|.++.++...+..+++.....+... +
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~--l----------------- 236 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVI--L----------------- 236 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccc--c-----------------
Confidence 467777763432 3446899999999999888888886333333221101110000 0
Q ss_pred HHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecc
Q 012151 91 FTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTC 152 (470)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~ 152 (470)
.....+.++..-+ + .-|++|+- ..+...+|..+|.|+|.+...
T Consensus 237 ------~~k~sL~e~~~li-~----------~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 237 ------AGKTSLEELAALI-A----------GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred ------CCCCCHHHHHHHH-h----------cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 1111222222222 1 56888765 346788999999999998653
No 356
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=29.04 E-value=58 Score=29.75 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=27.5
Q ss_pred cCh-HHHHHHHHHHHhC--CCeEEEEeCCCCCccccc
Q 012151 27 GHI-NPMLHLASILYSK--GFSVTIIHTDFNFSSTNY 60 (470)
Q Consensus 27 GH~-~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~ 60 (470)
|+. .=.+.|.+.|.++ ||+|.++.++.-.+.+..
T Consensus 10 ~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 10 GHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred cHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 445 6899999999999 999999999766665553
No 357
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=28.95 E-value=67 Score=25.07 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 012151 30 NPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 30 ~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
.|.+.|+++|.++|.+|.+.=|-
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CHHHHHHHHHHHCCCEEEEECCc
Confidence 79999999999999998886663
No 358
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=28.79 E-value=94 Score=25.26 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=26.7
Q ss_pred CeEEEEEcCcccccCHHHHHHHHHHHHhC--CCCEEEEE
Q 012151 283 KSVVYISFGSVIAINKDGFLEIAWGVANS--RMPFLWVV 319 (470)
Q Consensus 283 ~~~I~vs~Gs~~~~~~~~~~~i~~al~~~--~~~~i~~~ 319 (470)
+.+++++|||......+.+..+.+.+++. +..+-|..
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 36899999999875556677788888653 35666665
No 359
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.62 E-value=1.1e+02 Score=22.93 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=27.5
Q ss_pred CEEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEe
Q 012151 16 RRVILFPLPFQ--GHINPMLHLASILYSKGFSVTIIH 50 (470)
Q Consensus 16 ~~il~~~~~~~--GH~~p~l~La~~L~~rGh~V~~~~ 50 (470)
..|+++|.... .+..-...+++.|.+.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888887653 466678999999999999998844
No 360
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.51 E-value=1.3e+02 Score=22.02 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=28.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 012151 18 VILFPLPFQGHINPMLHLASILYSKGFSVTIIH 50 (470)
Q Consensus 18 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 50 (470)
+++...++.|-..-...||..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666677899999999999999999998876
No 361
>PF07565 Band_3_cyto: Band 3 cytoplasmic domain; InterPro: IPR013769 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains.; GO: 0008509 anion transmembrane transporter activity, 0006820 anion transport, 0016021 integral to membrane; PDB: 1HYN_Q.
Probab=28.34 E-value=1.2e+02 Score=28.23 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012151 413 KLERMEIERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDH 466 (470)
Q Consensus 413 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 466 (470)
..+.-+|.+++..+|+| +.|+.-|.+.+..-.- -.++++|+++
T Consensus 203 ~~~y~eiGR~~atlmsd---~~F~~~ay~a~~r~dl--------~~~id~Fl~~ 245 (257)
T PF07565_consen 203 DKDYHEIGRAIATLMSD---EVFHDVAYKAKSREDL--------LAGIDEFLDD 245 (257)
T ss_dssp TB-HHHHHHHHHHHHTS---HHHHHHHHH-SSHHHH--------HHHHHHHHHT
T ss_pred CCcccccchhhhhhhcc---HHHHHHHHHcCCHHHH--------HHHHHHHhcC
Confidence 57889999999999999 9999877766544332 2566666554
No 362
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=28.01 E-value=94 Score=31.81 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecC--CCCCC
Q 012151 30 NPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFP--DGFSE 79 (470)
Q Consensus 30 ~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~--~~~~~ 79 (470)
.-++.||+.|.+.|+++. ++......... .|+.+..+. +++|+
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e-----~GI~v~~Vsk~TgfPE 55 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAE-----AGVPVTEVSDYTGFPE 55 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHH-----CCCeEEEeecccCCch
Confidence 347899999999999984 45556666655 788777765 45555
No 363
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=27.96 E-value=73 Score=30.13 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=24.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
|+|+++-.+..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 467777766554 5678889999999999986
No 364
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=27.94 E-value=54 Score=31.06 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=40.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCC
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPD 75 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 75 (470)
+..+|+++-++++||.. |.-|++.|.+|++..-+...+...+ ...|++...+.+
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA---~~dGf~V~~v~e 70 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKA---KEDGFKVYTVEE 70 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHH---HhcCCEeecHHH
Confidence 45689999999999965 5678899999999887655433322 237888877754
No 365
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=27.84 E-value=62 Score=30.67 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=24.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
|+|+++-.++.| ..+|..|.++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 468888776655 4678889999999999887
No 366
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=27.84 E-value=1.4e+02 Score=24.02 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=26.5
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 19 ILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 19 l~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
+++..+..++-.-+..+++.|+++|+.|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 455566666777799999999999999998844
No 367
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=27.80 E-value=1.1e+02 Score=24.14 Aligned_cols=69 Identities=7% Similarity=0.025 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeee-------ccChHhhhc---cCCcceeec
Q 012151 298 KDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVK-------WAPQQEVLA---HPAVGGFWT 367 (470)
Q Consensus 298 ~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~p~~~lL~---~~~~~~~I~ 367 (470)
.+....++.++++++.+.+.+..... .....+ +..+....++ |+....|+. ...+ ...
T Consensus 11 Geia~r~~ra~r~~Gi~tv~v~s~~d--------~~s~~~--~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i 78 (110)
T PF00289_consen 11 GEIAVRIIRALRELGIETVAVNSNPD--------TVSTHV--DMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAI 78 (110)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEGGG--------TTGHHH--HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEE
T ss_pred CHHHHHHHHHHHHhCCcceeccCchh--------cccccc--cccccceecCcchhhhhhccHHHHhhHhhhhcC--ccc
Confidence 34567799999999999988875432 122222 3344445554 566666443 3344 889
Q ss_pred ccCchhhHHhh
Q 012151 368 HSGWNSTLESM 378 (470)
Q Consensus 368 HGG~gs~~eal 378 (470)
|+|+|-..|..
T Consensus 79 ~pGyg~lse~~ 89 (110)
T PF00289_consen 79 HPGYGFLSENA 89 (110)
T ss_dssp ESTSSTTTTHH
T ss_pred ccccchhHHHH
Confidence 99998877763
No 368
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=27.73 E-value=3.5e+02 Score=25.92 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=54.6
Q ss_pred CEEEEEcCCCcc---C--hHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHH
Q 012151 16 RRVILFPLPFQG---H--INPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVF 90 (470)
Q Consensus 16 ~~il~~~~~~~G---H--~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 90 (470)
..|++.|..+.| + ..-+.+|++.|.++|.+|.++.++...+..+.+... .+...
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~--------~~~~~------------- 233 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL--------LPGEL------------- 233 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh--------CCccc-------------
Confidence 346666654322 2 335889999998889998888776444333221000 00000
Q ss_pred HHHHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEec
Q 012151 91 FTAINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQT 151 (470)
Q Consensus 91 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~ 151 (470)
. .+. -...+.++..-+ + +-|++|+- ..+...+|..+|+|+|.+..
T Consensus 234 ~-~l~--g~~sL~el~ali-~----------~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 234 R-NLA--GETSLDEAVDLI-A----------LAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred c-cCC--CCCCHHHHHHHH-H----------hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 0 000 011223332222 2 56899876 34678889999999998754
No 369
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=27.65 E-value=86 Score=27.50 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=32.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCCcccc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYS-KGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~~~ 59 (470)
||++.-.++.| .+=...|+++|.+ .||+|.++.++.-.+.+.
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 46666666645 7779999999998 499999999976666555
No 370
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=27.55 E-value=1.1e+02 Score=28.55 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=30.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
.|.+.-=+|-|-..-...||..|+++|++|.++=.+
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 566665566799999999999999999999998544
No 371
>PRK06988 putative formyltransferase; Provisional
Probab=27.51 E-value=3.6e+02 Score=25.88 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=23.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
|||+|+..+. ..+...+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 4799886554 3456677888899998887764
No 372
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=27.41 E-value=85 Score=31.23 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
+.||++.-.++ +...-...+.+.|.+.|++|.++.++.-.+.+.
T Consensus 3 ~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 34677776666 455668999999999999999999976655554
No 373
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=27.41 E-value=4.8e+02 Score=27.58 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=28.6
Q ss_pred cccCchhhHHhhhcC--Cce--ecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHh
Q 012151 367 THSGWNSTLESMCEG--VPM--ICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVM 427 (470)
Q Consensus 367 ~HGG~gs~~eal~~G--vP~--v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl 427 (470)
.+||+|+...+.... +|+ +++|-..-+......+.+ .. .++++.|.++|++++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~--~~------Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYK--RN------HLTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHH--HH------CcCHHHHHHHHHHHh
Confidence 469998866665543 333 334332212222222322 12 378899988887765
No 374
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=27.36 E-value=1.4e+02 Score=25.58 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=32.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
.|.|+-+-..|-..=+-+|.+.|..||+.|-++-+..
T Consensus 4 Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred EEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 5778888888999999999999999999999988743
No 375
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=27.34 E-value=5.1e+02 Score=25.91 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=73.4
Q ss_pred CCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeee-c-------cCh
Q 012151 282 PKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVK-W-------APQ 353 (470)
Q Consensus 282 ~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~-------~p~ 353 (470)
.+.+++.-.||.... ....+++.|.+.+..+-+++...... -+.....+...++-...+ | ..+
T Consensus 6 ~k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~A~~------fi~~~~l~~l~~~~V~~~~~~~~~~~~~~h 76 (399)
T PRK05579 6 GKRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEAAKK------FVTPLTFQALSGNPVSTDLWDPAAEAAMGH 76 (399)
T ss_pred CCeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHhHHH------HHhHHHHHHhhCCceEccccccccCCCcch
Confidence 345666666777531 33446677777777766665433211 011112223333311221 2 123
Q ss_pred HhhhccCCcceeecccCchhhH-------------HhhhcCCceecCCCccc-------hhhhHHHHHhhhheeEEcCC-
Q 012151 354 QEVLAHPAVGGFWTHSGWNSTL-------------ESMCEGVPMICQPYLPD-------QMVNARYVSHFWRVGLHSEW- 412 (470)
Q Consensus 354 ~~lL~~~~~~~~I~HGG~gs~~-------------eal~~GvP~v~~P~~~D-------Q~~na~rv~~~~G~G~~l~~- 412 (470)
-++...+++ .+|--+=.||+. -++++++|+|++|.... -..|..++.+ +|+-+.-+.
T Consensus 77 i~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~ii~P~~ 154 (399)
T PRK05579 77 IELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRS-RGVEIIGPAS 154 (399)
T ss_pred hhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHH-CCCEEECCCC
Confidence 334333443 244444444433 24667999999994432 3457788888 587766431
Q ss_pred ------------cccHHHHHHHHHHHhc
Q 012151 413 ------------KLERMEIERAIRRVMV 428 (470)
Q Consensus 413 ------------~~~~~~l~~ai~~vl~ 428 (470)
-.++++|...+.+.+.
T Consensus 155 g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 155 GRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred ccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 2577888888887774
No 376
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=27.32 E-value=88 Score=31.16 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCccch----------HHHHhhcCCCeEEEe
Q 012151 121 SSPCCLITDAFWFFT----------HTVAADFKLPTIVLQ 150 (470)
Q Consensus 121 ~~pDlvi~D~~~~~~----------~~vA~~~giP~v~~~ 150 (470)
.+||++|+.+.+..+ ..+.++++||++.-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 75 KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 499999999877332 134568999999843
No 377
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=27.31 E-value=80 Score=26.44 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=47.6
Q ss_pred CchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcCC-cccHHHHHHHHHHHh
Q 012151 370 GWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSEW-KLERMEIERAIRRVM 427 (470)
Q Consensus 370 G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~~~~~l~~ai~~vl 427 (470)
+==||.|-+----|+|+=.-..-+++|...+.. |+-..+.+ .++.++|..++..+-
T Consensus 36 ~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl~~--gl~~A~~KRpVs~e~ie~~v~~ie 92 (156)
T COG1327 36 ERFTTFERAELRPLIVVKKDGRREPFDREKLRR--GLIRACEKRPVSSEQIEEAVSHIE 92 (156)
T ss_pred cccchhheeeeccceEECcCCCcCCCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345888888888899998888899999999988 88888887 899999998888773
No 378
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=27.30 E-value=4.2e+02 Score=23.09 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=31.7
Q ss_pred cCCceecCCCcc----ch---hhhHHHHHhhhheeEEcCC-------------cccHHHHHHHHHHHhc
Q 012151 380 EGVPMICQPYLP----DQ---MVNARYVSHFWRVGLHSEW-------------KLERMEIERAIRRVMV 428 (470)
Q Consensus 380 ~GvP~v~~P~~~----DQ---~~na~rv~~~~G~G~~l~~-------------~~~~~~l~~ai~~vl~ 428 (470)
.++|+|++|-.. .. ..|..++++ +|+=+.-.. -.+.++|...+.+.++
T Consensus 112 ~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 112 ATTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 399999999532 22 556788888 587655432 2466777777766654
No 379
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=27.30 E-value=2e+02 Score=28.31 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=9.7
Q ss_pred cCCceecCCCcc
Q 012151 380 EGVPMICQPYLP 391 (470)
Q Consensus 380 ~GvP~v~~P~~~ 391 (470)
.++|++++|...
T Consensus 121 ~~~P~i~IPTta 132 (375)
T cd08194 121 PGLPLIAIPTTA 132 (375)
T ss_pred CCCCEEEECCCC
Confidence 368999999864
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=27.25 E-value=1.4e+02 Score=27.95 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
+..|+|+..+|-|-..-...||..|+++|++|.++..+.++
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 34677777777899999999999999999999999987543
No 381
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=27.25 E-value=78 Score=28.74 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=23.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
+|+++-.+-.| ..||+.|.+.||+|+.+-..
T Consensus 2 ~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 2 KIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred EEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 45665555433 68999999999999998774
No 382
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.24 E-value=88 Score=31.17 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCccch----------HHHHhhcCCCeEEEe
Q 012151 121 SSPCCLITDAFWFFT----------HTVAADFKLPTIVLQ 150 (470)
Q Consensus 121 ~~pDlvi~D~~~~~~----------~~vA~~~giP~v~~~ 150 (470)
.+||++|+.+.+..+ ..+.++++||++.-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 75 ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 499999999877332 134568999999843
No 383
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=27.11 E-value=2.8e+02 Score=26.13 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=69.2
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcC
Q 012151 302 LEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEG 381 (470)
Q Consensus 302 ~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~G 381 (470)
..+++.+++.+..+++..+.. ..+++.+.+..+.++.-. ||++ .=...|.+....|+..|
T Consensus 150 ~~~~~~l~~~~~Dlivlagym--------~il~~~~l~~~~~~iINi----------HpSL--LP~f~G~~p~~~ai~~G 209 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAKYM--------QILSPDFVKRYPNKIINI----------HHSF--LPAFIGANPYQRAYERG 209 (280)
T ss_pred HHHHHHHHHhCCCEEEEeCch--------hhCCHHHHhhccCCEEEe----------cCCc--CCCCCCcCHHHHHHHcC
Confidence 345666666667777666543 345666554443322211 3443 33346888999999999
Q ss_pred CceecCCCcc--chhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 012151 382 VPMICQPYLP--DQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLK 443 (470)
Q Consensus 382 vP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~ 443 (470)
+...++-.+. +..+.+.-+.+. -+ .+...-|.++|.+.+.++-- .-|-+.++.+.
T Consensus 210 ~k~tG~TvH~V~e~lD~GpII~Q~-~v--~I~~~dt~~~L~~ri~~~E~----~~~~~ai~~~~ 266 (280)
T TIGR00655 210 VKIIGATAHYVTEELDEGPIIEQD-VV--RVDHTDNVEDLIRAGRDIEK----VVLARAVKLHL 266 (280)
T ss_pred CCeEEEEEEEEcCCCcCCCeEEEE-EE--EcCCCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 9998888664 566666666663 22 22334688888888866422 45655555444
No 384
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=27.08 E-value=1.8e+02 Score=26.61 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
..++|+++...+ .--..|++.|.++||+|+.++-
T Consensus 16 ~~~~ilItGasG----~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 16 KTKTVFVAGATG----RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cCCeEEEECCCc----HHHHHHHHHHHhCCCEEEEEec
Confidence 345677765443 2346788999999999987764
No 385
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.00 E-value=68 Score=33.78 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=36.7
Q ss_pred cceeecccCchhhHHhhh----cCCceecCCCccchhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhcc
Q 012151 362 VGGFWTHSGWNSTLESMC----EGVPMICQPYLPDQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVE 429 (470)
Q Consensus 362 ~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 429 (470)
+.++|+-||=||+..|.+ .++|++++-+.. +|- +. ..+.+++.+++++++++
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~------------lGF---L~-~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICINMGT------------VGF---LT-EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC------------CCc---Cc-ccCHHHHHHHHHHHHcC
Confidence 445999999999999966 378888854421 111 11 46778888888888875
No 386
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=26.84 E-value=2.1e+02 Score=24.75 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=44.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc--cccCCCCCeeEEecCCCCCCCcccccCHHHHHHH
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN--YFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTA 93 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~--~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (470)
-.|.+++..+.|-....+-+|-.-+-+|.+|.++-.-......- ......+++.+.....++....... ..-
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~---~~~--- 77 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWRMNEE---EED--- 77 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT----GGGH---HHH---
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccccCCCc---HHH---
Confidence 45888888898988876666655555667777765422201000 0112335688888876443321111 110
Q ss_pred HHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCc
Q 012151 94 INGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFW 132 (470)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~ 132 (470)
...+...+...-+.+.. ..+|+||-|-..
T Consensus 78 -~~~~~~~~~~a~~~i~~---------~~~dlvILDEi~ 106 (172)
T PF02572_consen 78 -RAAAREGLEEAKEAISS---------GEYDLVILDEIN 106 (172)
T ss_dssp -HHHHHHHHHHHHHHTT----------TT-SEEEEETHH
T ss_pred -HHHHHHHHHHHHHHHhC---------CCCCEEEEcchH
Confidence 22233333333222222 379999999644
No 387
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=26.69 E-value=2e+02 Score=30.14 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=49.8
Q ss_pred EcCcccccCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeecc-----Ch-----Hhhh
Q 012151 289 SFGSVIAINK-DGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWA-----PQ-----QEVL 357 (470)
Q Consensus 289 s~Gs~~~~~~-~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----p~-----~~lL 357 (470)
|.||.+.... ...+.+++.|++.|.+.+.-+.++... .+-+.+.+ .++++.+.-. -+ ..+-
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~------~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~t 74 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAIL------PLYDALSQ--STQIRHILARHEQGAGFIAQGMARTT 74 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccH------HHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHc
Confidence 3455554333 346678888888888887777554210 01122211 1123332111 11 1122
Q ss_pred ccCCcceeecccCch------hhHHhhhcCCceecCC
Q 012151 358 AHPAVGGFWTHSGWN------STLESMCEGVPMICQP 388 (470)
Q Consensus 358 ~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (470)
..+.+ +++|.|-| .+.+|-..++|+|++.
T Consensus 75 g~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPAV--CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 23444 88888755 7889999999999985
No 388
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=26.68 E-value=2.4e+02 Score=27.11 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=19.0
Q ss_pred cceeecccCchhhHHh-----hhc--CCceecCCCcc
Q 012151 362 VGGFWTHSGWNSTLES-----MCE--GVPMICQPYLP 391 (470)
Q Consensus 362 ~~~~I~HGG~gs~~ea-----l~~--GvP~v~~P~~~ 391 (470)
.+++|-=||. |++.+ +.+ |+|++.+|...
T Consensus 79 ~d~IIaiGGG-s~~D~aK~ia~~~~~~~p~i~iPTt~ 114 (332)
T cd07766 79 VDAVIAVGGG-STLDTAKAVAALLNRGLPIIIVPTTA 114 (332)
T ss_pred cCEEEEeCCc-hHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 3348888883 33332 233 99999999863
No 389
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=26.55 E-value=41 Score=31.01 Aligned_cols=27 Identities=15% Similarity=0.120 Sum_probs=21.6
Q ss_pred ceeecccCchhhHHhhhc----CCceecCCC
Q 012151 363 GGFWTHSGWNSTLESMCE----GVPMICQPY 389 (470)
Q Consensus 363 ~~~I~HGG~gs~~eal~~----GvP~v~~P~ 389 (470)
+++|+-||=||+..|++. ++|++++-.
T Consensus 27 Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 27 DVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 349999999999988654 689888654
No 390
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=26.50 E-value=2.7e+02 Score=26.22 Aligned_cols=26 Identities=27% Similarity=0.180 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCccc
Q 012151 33 LHLASILYSKGFSVTIIHTDFNFSST 58 (470)
Q Consensus 33 l~La~~L~~rGh~V~~~~~~~~~~~~ 58 (470)
.++|..++++|++|.++..+......
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~l~ 28 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHSLS 28 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 46888999999999999997655443
No 391
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.47 E-value=1.2e+02 Score=26.89 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=32.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFS 56 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 56 (470)
.|+|+-..|-|-..-...||..+..+|.+|.+++.+.++.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 4677777788999999999999999999999999976653
No 392
>PRK04148 hypothetical protein; Provisional
Probab=26.47 E-value=1.3e+02 Score=24.87 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
.++|+.+..| .| ..+|+.|++.||+|+.+=.
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi 47 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDI 47 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEEC
Confidence 4678888877 34 3468888899999988654
No 393
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=26.38 E-value=1.1e+02 Score=24.31 Aligned_cols=34 Identities=21% Similarity=0.029 Sum_probs=29.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 18 VILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 18 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
++..+.++..|-....-++..|.++|++|.+...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5677777889999999999999999999999865
No 394
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.21 E-value=1e+02 Score=22.28 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 31 PMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 31 p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
.-+.+|..|++.|.+||++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 468899999999999999987533
No 395
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.99 E-value=57 Score=32.41 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
..-||+---|+-|--.=+++++..|+++| .|.|++.+.....+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 34577778889999999999999999999 999999987665554
No 396
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=25.90 E-value=1.1e+02 Score=30.74 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCEEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 15 GRRVILFPL--PFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 15 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
+++|+.+.. ||-|-..-.+.||..|+.+|++|.++=.+..
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 455555544 5669999999999999999999999865443
No 397
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=25.81 E-value=1.3e+02 Score=24.04 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=29.8
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCCCccccc
Q 012151 25 FQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNY 60 (470)
Q Consensus 25 ~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 60 (470)
..|.-..++.+++.++++|..|..++.....+..+.
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 558889999999999999999988888666665553
No 398
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=25.80 E-value=1.1e+02 Score=27.30 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
+++|.+=..++-|-.+-|+.=|++|.++|.+|.+..-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 46888888999999999999999999999999996553
No 399
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.73 E-value=1.4e+02 Score=24.51 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
+.+|++...++-+|-.----++..|...|++|......
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 56899999999999999999999999999999987764
No 400
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=25.54 E-value=2.1e+02 Score=30.02 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.2
Q ss_pred cceeecccCch------hhHHhhhcCCceecCC
Q 012151 362 VGGFWTHSGWN------STLESMCEGVPMICQP 388 (470)
Q Consensus 362 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (470)
..++++|.|-| .+++|...++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 33499998855 7889999999999994
No 401
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.47 E-value=1.4e+02 Score=24.59 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=34.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
.+|++.+..+-+|-.----++..|.+.|++|........
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~ 40 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSP 40 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCC
Confidence 478999999999999999999999999999999887644
No 402
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=25.47 E-value=2.9e+02 Score=26.99 Aligned_cols=47 Identities=11% Similarity=-0.065 Sum_probs=36.5
Q ss_pred hhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 012151 273 SISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPG 322 (470)
Q Consensus 273 l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~ 322 (470)
+..|+... +.++.|.+......++....+++.+++.+.+.+++++++
T Consensus 58 v~~~~~~G---GT~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGD 104 (347)
T COG0205 58 VDDLINRG---GTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGD 104 (347)
T ss_pred hhHHHhcC---CeEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45566643 377777777766778888899999999999999988776
No 403
>PRK11914 diacylglycerol kinase; Reviewed
Probab=25.46 E-value=3e+02 Score=26.16 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=22.9
Q ss_pred eeecccCchhhHHhh----hcCCceecCCCc
Q 012151 364 GFWTHSGWNSTLESM----CEGVPMICQPYL 390 (470)
Q Consensus 364 ~~I~HGG~gs~~eal----~~GvP~v~~P~~ 390 (470)
.+|--||=||+.|++ ..++|+-++|..
T Consensus 67 ~vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred EEEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 499999999999986 457999999963
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=25.45 E-value=1.3e+02 Score=30.38 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFS 56 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 56 (470)
+..|+++..++.|-..-...||..|.++|++|.+++.+.++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 457888888899999999999999999999999999976653
No 405
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.42 E-value=60 Score=29.20 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=30.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 18 VILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 18 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
+++----+.|--.-...++.-+...||.|++++++..
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T 67 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELT 67 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechh
Confidence 4444445668888999999999999999999999743
No 406
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=25.33 E-value=3.1e+02 Score=25.08 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=29.7
Q ss_pred hhhhcCCCCCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEE
Q 012151 273 SISWLDKQTPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFL 316 (470)
Q Consensus 273 l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i 316 (470)
+.+++. ..+.++||-.-|......+.+..+.+++++++..+.
T Consensus 24 ~~~~~~--~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~ 65 (233)
T PRK05282 24 IAELLA--GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVT 65 (233)
T ss_pred HHHHHc--CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 445555 345689998766554456667889999999998754
No 407
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.20 E-value=1.8e+02 Score=27.13 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=53.9
Q ss_pred EEEEEcCCCcc----ChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHH
Q 012151 17 RVILFPLPFQG----HINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFT 92 (470)
Q Consensus 17 ~il~~~~~~~G----H~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 92 (470)
.|++.|..+.. ...-+..|++.|.++|++|.++..+...+..+.+.....+-....
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~-------------------- 182 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVN-------------------- 182 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCcccc--------------------
Confidence 45555544321 234589999999999999988876544333322100000000000
Q ss_pred HHHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEec
Q 012151 93 AINGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQT 151 (470)
Q Consensus 93 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~ 151 (470)
+. -...+.++..-+ .+-|++|+-. .+...+|..+|+|++.+..
T Consensus 183 -~~--~~~~l~e~~~li-----------~~~~l~I~~D--sg~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 183 -LA--GKTSLRELAALL-----------ARADLVVTND--SGPMHLAAALGTPTVALFG 225 (279)
T ss_pred -Cc--CCCCHHHHHHHH-----------HhCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 00 001223332223 2568998763 3677888899999999764
No 408
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=25.18 E-value=4.9e+02 Score=23.14 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=30.0
Q ss_pred EEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 18 VILFPLP-FQGHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 18 il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
+-++..| ..|-..-++..++....+|-.|.++.+....
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~ 44 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT 44 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 4444444 4499999999999999999999999996443
No 409
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.96 E-value=1.2e+02 Score=24.77 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=30.5
Q ss_pred EEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 012151 18 VILFPLPFQ-GHINPMLHLASILYSKGFSVTIIHTDFNFSST 58 (470)
Q Consensus 18 il~~~~~~~-GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 58 (470)
++++..|.. -.+...+=+...|.++|++|++++++.-....
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kLl 47 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKLL 47 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhheee
Confidence 445555544 57777888999999999999999986554444
No 410
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=24.69 E-value=86 Score=20.21 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHhccchhHHHHHHHHHH
Q 012151 415 ERMEIERAIRRVMVEAEGQEMRARIMHL 442 (470)
Q Consensus 415 ~~~~l~~ai~~vl~~~~~~~~~~~a~~l 442 (470)
+++.|..||..+.+++ -++++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 5789999999998763 4667666653
No 411
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=24.65 E-value=4.2e+02 Score=24.50 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=34.7
Q ss_pred cChHhhhccCCcceee--c--ccCchhhHHhhhcCCceecCCCccc--hhhhHHHHHhhhheeEEcCC
Q 012151 351 APQQEVLAHPAVGGFW--T--HSGWNSTLESMCEGVPMICQPYLPD--QMVNARYVSHFWRVGLHSEW 412 (470)
Q Consensus 351 ~p~~~lL~~~~~~~~I--~--HGG~gs~~eal~~GvP~v~~P~~~D--Q~~na~rv~~~~G~G~~l~~ 412 (470)
-+..+++..+++ +| | +...--+..|+.+|+|+|+-|.... |..--..++ + ++++.+..
T Consensus 52 ~dl~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa-~-~~~v~~s~ 115 (257)
T PRK00048 52 DDLEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA-K-KIPVVIAP 115 (257)
T ss_pred CCHHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-c-CCCEEEEC
Confidence 345556655665 55 2 2224566778999999999876543 333333333 3 77777655
No 412
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=24.55 E-value=27 Score=32.87 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=31.6
Q ss_pred ccCchh--hHHhhhcCCceecCCCccchhhhHH-HHHhhhhee
Q 012151 368 HSGWNS--TLESMCEGVPMICQPYLPDQMVNAR-YVSHFWRVG 407 (470)
Q Consensus 368 HGG~gs--~~eal~~GvP~v~~P~~~DQ~~na~-rv~~~~G~G 407 (470)
-||||+ +..|-.+||-++++-+...|..+++ |+.. .|+-
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~-~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA-RGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH-cCCC
Confidence 357775 4567778999999999999999995 5777 5988
No 413
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=24.50 E-value=13 Score=20.35 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=13.4
Q ss_pred CchhhHHhhhcCCceec
Q 012151 370 GWNSTLESMCEGVPMIC 386 (470)
Q Consensus 370 G~gs~~eal~~GvP~v~ 386 (470)
|.|++.-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888776
No 414
>PRK14072 6-phosphofructokinase; Provisional
Probab=24.27 E-value=52 Score=33.05 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=30.5
Q ss_pred hhccCCcceeecccCchhhHHhhh-------cC--CceecCCCccc
Q 012151 356 VLAHPAVGGFWTHSGWNSTLESMC-------EG--VPMICQPYLPD 392 (470)
Q Consensus 356 lL~~~~~~~~I~HGG~gs~~eal~-------~G--vP~v~~P~~~D 392 (470)
.|..-+++++|.=||-||..-|.. +| +|+|++|-+.|
T Consensus 98 ~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTID 143 (416)
T PRK14072 98 VFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTID 143 (416)
T ss_pred HHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeeccc
Confidence 567789999999999999876632 46 99999998766
No 415
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.17 E-value=87 Score=26.82 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecC
Q 012151 24 PFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFP 74 (470)
Q Consensus 24 ~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 74 (470)
++.|++- ..|+++|.++||+|+.++-....... . .++++....
T Consensus 5 GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~~~~-~-----~~~~~~~~d 47 (183)
T PF13460_consen 5 GATGFVG--RALAKQLLRRGHEVTALVRSPSKAED-S-----PGVEIIQGD 47 (183)
T ss_dssp TTTSHHH--HHHHHHHHHTTSEEEEEESSGGGHHH-C-----TTEEEEESC
T ss_pred CCCChHH--HHHHHHHHHCCCEEEEEecCchhccc-c-----cccccceee
Confidence 4445543 45899999999999999975332111 2 677777653
No 416
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=24.15 E-value=2.5e+02 Score=26.36 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=20.1
Q ss_pred ceeecccCchhhHHhhhc-----CCceec-CCCc
Q 012151 363 GGFWTHSGWNSTLESMCE-----GVPMIC-QPYL 390 (470)
Q Consensus 363 ~~~I~HGG~gs~~eal~~-----GvP~v~-~P~~ 390 (470)
+.+|.-||=||+.|++.. ..|.++ +|..
T Consensus 59 d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 59 DTVIAGGGDGTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred CEEEEECCCChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 349999999999996542 345554 8963
No 417
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.93 E-value=1.7e+02 Score=25.64 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=22.0
Q ss_pred EEEeCCCc-cchHHHHhhcCCCeEEEeccc
Q 012151 125 CLITDAFW-FFTHTVAADFKLPTIVLQTCG 153 (470)
Q Consensus 125 lvi~D~~~-~~~~~vA~~~giP~v~~~~~~ 153 (470)
++|-..+. +.+..+|+.+++|.|.+.|+.
T Consensus 62 ~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 62 VLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred EEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 55544444 778889999999999988763
No 418
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.83 E-value=9.2e+02 Score=26.33 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=30.7
Q ss_pred CCEEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 15 GRRVILFPLP--FQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 15 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
+.++++++.. +-|-..-...||..|+..|++|.++=.+..
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3455555554 458888899999999999999999876544
No 419
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=23.78 E-value=93 Score=27.88 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=20.5
Q ss_pred CCcEEEeCCCccc-------hHHHHhhcCCCeEEEe
Q 012151 122 SPCCLITDAFWFF-------THTVAADFKLPTIVLQ 150 (470)
Q Consensus 122 ~pDlvi~D~~~~~-------~~~vA~~~giP~v~~~ 150 (470)
.||+|++|..... |..+...+++|+|.+.
T Consensus 93 ~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 93 KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred CCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 7999999976533 2344457788988864
No 420
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=23.76 E-value=1.3e+02 Score=27.82 Aligned_cols=33 Identities=33% Similarity=0.304 Sum_probs=27.6
Q ss_pred CEEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 16 RRVILFPLPFQ--GHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 16 ~~il~~~~~~~--GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
.+|++++.++. |+ -+.+|+.|..+|++|+++..
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEc
Confidence 47999998875 44 57889999999999999883
No 421
>PRK14974 cell division protein FtsY; Provisional
Probab=23.74 E-value=1.7e+02 Score=28.43 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
+..|+|+..+|.|-..-+..||..|..+|+.|.++..+.++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 45788888889999999999999999999999998876443
No 422
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.69 E-value=3.1e+02 Score=24.13 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=19.0
Q ss_pred EEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEE
Q 012151 285 VVYISFGSVIAINKDGFLEIAWGVANSRMPFLWV 318 (470)
Q Consensus 285 ~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~ 318 (470)
++.+-+|+.. +..+..+++..+..+.++
T Consensus 2 i~vid~g~gn------~~~~~~~l~~~g~~v~~~ 29 (199)
T PRK13181 2 IAIIDYGAGN------LRSVANALKRLGVEAVVS 29 (199)
T ss_pred EEEEeCCCCh------HHHHHHHHHHCCCcEEEE
Confidence 4566777763 456677888888776555
No 423
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=23.68 E-value=1.8e+02 Score=24.78 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=34.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFS 56 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 56 (470)
.+++.-.++.|-......++..|.++|.+|.++..+.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 4678888888999999999999999999999999876543
No 424
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=23.66 E-value=1.1e+02 Score=26.08 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=21.7
Q ss_pred CCcceeecccCch------hhHHhhhcCCceecCCC
Q 012151 360 PAVGGFWTHSGWN------STLESMCEGVPMICQPY 389 (470)
Q Consensus 360 ~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 389 (470)
+.+ +++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGA--LVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEE--EEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 444 77777754 67789999999999964
No 425
>PLN02884 6-phosphofructokinase
Probab=23.41 E-value=64 Score=32.27 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=30.6
Q ss_pred hhccCCcceeecccCchhhHHhhh-------cC--CceecCCCccc
Q 012151 356 VLAHPAVGGFWTHSGWNSTLESMC-------EG--VPMICQPYLPD 392 (470)
Q Consensus 356 lL~~~~~~~~I~HGG~gs~~eal~-------~G--vP~v~~P~~~D 392 (470)
.|..-+++++|.=||-||..-|.. .| +|+|++|-+.|
T Consensus 138 ~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTID 183 (411)
T PLN02884 138 SIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTID 183 (411)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEecccccc
Confidence 567789999999999999976643 56 99999998765
No 426
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=23.38 E-value=5.7e+02 Score=24.36 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=22.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
|||+|+..+. -.+...+.|.++||+|..+.+.
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEECC
Confidence 5788875443 4567778888889998876653
No 427
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=23.36 E-value=3.2e+02 Score=28.61 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=21.9
Q ss_pred cceeecccCch------hhHHhhhcCCceecCC
Q 012151 362 VGGFWTHSGWN------STLESMCEGVPMICQP 388 (470)
Q Consensus 362 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (470)
..++++|.|-| .+.+|-..++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33399998855 7789999999999884
No 428
>PRK13055 putative lipid kinase; Reviewed
Probab=23.06 E-value=2.7e+02 Score=26.98 Aligned_cols=28 Identities=14% Similarity=-0.063 Sum_probs=22.4
Q ss_pred ceeecccCchhhHHhhhc------CCceecCCCc
Q 012151 363 GGFWTHSGWNSTLESMCE------GVPMICQPYL 390 (470)
Q Consensus 363 ~~~I~HGG~gs~~eal~~------GvP~v~~P~~ 390 (470)
+++|--||=||+.|++.. ++|+-++|..
T Consensus 61 d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 61 DLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred CEEEEECCCCHHHHHHHHHhhcCCCCcEEEECCC
Confidence 349999999999998743 5788889963
No 429
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=22.98 E-value=1.9e+02 Score=28.13 Aligned_cols=28 Identities=21% Similarity=0.114 Sum_probs=22.5
Q ss_pred CCcEEEeCCCccchHHHHhhcCCCeEEEec
Q 012151 122 SPCCLITDAFWFFTHTVAADFKLPTIVLQT 151 (470)
Q Consensus 122 ~pDlvi~D~~~~~~~~vA~~~giP~v~~~~ 151 (470)
+-|++|+. ..+...+|..+|+|+|.+..
T Consensus 261 ~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 261 ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 56888876 34678899999999998754
No 430
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.93 E-value=1.3e+02 Score=30.06 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
+.+|++.-.++ +...=...|.+.|.+.|++|.++.++.-...+.
T Consensus 6 ~k~IllgvTGs-iaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 6 GKRIVLGVSGG-IAAYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCeEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 45677776666 456678999999999999999999976555554
No 431
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=22.68 E-value=1.5e+02 Score=26.97 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=31.3
Q ss_pred EEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 17 RVILFPLP--FQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 17 ~il~~~~~--~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
+|++++.+ +-|.....-.|+-.|+.+|+.|.++=.+..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 36666665 448999999999999999999999887643
No 432
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=22.61 E-value=5.8e+02 Score=26.94 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=22.0
Q ss_pred cceeecccCch------hhHHhhhcCCceecCC
Q 012151 362 VGGFWTHSGWN------STLESMCEGVPMICQP 388 (470)
Q Consensus 362 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (470)
..++++|.|-| .+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33499998855 6778999999999996
No 433
>PRK05858 hypothetical protein; Provisional
Probab=22.50 E-value=3.9e+02 Score=27.89 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=22.5
Q ss_pred cCCcceeecccCch------hhHHhhhcCCceecCC
Q 012151 359 HPAVGGFWTHSGWN------STLESMCEGVPMICQP 388 (470)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (470)
.+.+ ++.|+|-| .+.+|-..++|+|++.
T Consensus 67 ~~gv--~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 67 VPGV--AVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred CCeE--EEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 3455 88888844 7889999999999985
No 434
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=22.47 E-value=2.6e+02 Score=24.97 Aligned_cols=44 Identities=7% Similarity=-0.078 Sum_probs=31.9
Q ss_pred hhhhcCCC--CCCeEEEEEcCcccccCHHHHHHHHHHHHhC-CCCEEEE
Q 012151 273 SISWLDKQ--TPKSVVYISFGSVIAINKDGFLEIAWGVANS-RMPFLWV 318 (470)
Q Consensus 273 l~~~l~~~--~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~-~~~~i~~ 318 (470)
+.+++... ....++|+...|. ...+....+.++++.. +..+...
T Consensus 20 l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 20 IDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred HHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 66666654 3456899977776 4667788899999999 8766543
No 435
>PRK04946 hypothetical protein; Provisional
Probab=22.34 E-value=70 Score=27.93 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChH-hhhccCCcceeecccCchhhH
Q 012151 300 GFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQ-EVLAHPAVGGFWTHSGWNSTL 375 (470)
Q Consensus 300 ~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~-~lL~~~~~~~~I~HGG~gs~~ 375 (470)
.+..++..+...+.+-+.++.+.. .++.+. .+..|+.|. .|++.++. --.|||.|.+.
T Consensus 111 ~L~~fl~~a~~~g~r~v~IIHGkG-----------~gvLk~-----~V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 111 ELGALIAACRKEHVFCACVMHGHG-----------KHILKQ-----QTPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCC-----------HhHHHH-----HHHHHHcCCchhheeecc--CcccCCceEEE
Confidence 344456666667777777775542 234333 355787643 36655555 66899998764
No 436
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=22.24 E-value=2.3e+02 Score=25.30 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 15 GRRVILFPLPFQ--GHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 15 ~~~il~~~~~~~--GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
..||+++|.++- |+ -+..|+.|..+|++|+++.....
T Consensus 49 ~~~v~vlcG~GnNGGD---G~VaAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 49 ARRVLVLCGPGNNGGD---GLVAARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred CCEEEEEECCCCccHH---HHHHHHHHHhCCCceEEEEeCCC
Confidence 458999999986 45 46789999999999999886433
No 437
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=22.23 E-value=1.1e+02 Score=26.76 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=23.1
Q ss_pred CCCcEEEeCCC--ccchHHHHhhcCCCeEEE
Q 012151 121 SSPCCLITDAF--WFFTHTVAADFKLPTIVL 149 (470)
Q Consensus 121 ~~pDlvi~D~~--~~~~~~vA~~~giP~v~~ 149 (470)
.++|.|++=.. +..+..+|.++|+|+|.+
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 36999986533 367889999999999985
No 438
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.21 E-value=1.1e+02 Score=27.44 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=23.3
Q ss_pred CCcEEEeCCCc--cchHHHHhhcCCCeEEEeccc
Q 012151 122 SPCCLITDAFW--FFTHTVAADFKLPTIVLQTCG 153 (470)
Q Consensus 122 ~pDlvi~D~~~--~~~~~vA~~~giP~v~~~~~~ 153 (470)
+||+||..... .....-....++|++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 89999988666 345566678899999988764
No 439
>PLN00016 RNA-binding protein; Provisional
Probab=22.19 E-value=1.1e+02 Score=30.17 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=24.6
Q ss_pred CCEEEEEc--CCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 15 GRRVILFP--LPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 15 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
+++|+++. .++.|.+ -..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 35787771 1233433 356789999999999998864
No 440
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.15 E-value=1.9e+02 Score=28.92 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
+..|+++-.+|.|-..-+..||..|..+|..|.+++.+.++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 45788888889999999999999999999999999987654
No 441
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.14 E-value=2.8e+02 Score=26.24 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=67.7
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchhHHHHhcCCceeeeccChHhhhccCCcceeecccCchhhHHhhhcCC
Q 012151 303 EIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKGFLEMLDGRGCIVKWAPQQEVLAHPAVGGFWTHSGWNSTLESMCEGV 382 (470)
Q Consensus 303 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~Gv 382 (470)
.+.+.+++.+.++++..+.. ..+|+.+.+..+.++. =-||++ .=.-.|.+.+..|+.+|+
T Consensus 156 ~~~~~l~~~~~Dlivlagy~--------~il~~~~l~~~~~~ii----------NiHpSL--LP~yrG~~~~~~ai~~G~ 215 (286)
T PRK06027 156 RLLELIDEYQPDLVVLARYM--------QILSPDFVARFPGRII----------NIHHSF--LPAFKGAKPYHQAYERGV 215 (286)
T ss_pred HHHHHHHHhCCCEEEEecch--------hhcCHHHHhhccCCce----------ecCccc--CCCCCCCCHHHHHHHCCC
Confidence 45555666666666666543 3355555443332211 113443 333468889999999999
Q ss_pred ceecCCCcc--chhhhHHHHHhhhheeEEcCCcccHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 012151 383 PMICQPYLP--DQMVNARYVSHFWRVGLHSEWKLERMEIERAIRRVMVEAEGQEMRARIMHLK 443 (470)
Q Consensus 383 P~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~ 443 (470)
...++-.+. +..+.+.-+.++ -+ .+...-|.++|.+.+..+-- +-|-+.++.+.
T Consensus 216 ~~tG~TiH~v~~~~D~G~Ii~Q~-~v--~i~~~dt~~~L~~ri~~~E~----~~~~~ai~~~~ 271 (286)
T PRK06027 216 KLIGATAHYVTADLDEGPIIEQD-VI--RVDHRDTAEDLVRAGRDVEK----QVLARAVRWHL 271 (286)
T ss_pred CeEEEEEEEEcCCCcCCCcEEEE-EE--EcCCCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 998888664 566666666663 33 23334578888888865433 45665555544
No 442
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.11 E-value=1.2e+02 Score=26.25 Aligned_cols=108 Identities=10% Similarity=0.132 Sum_probs=58.2
Q ss_pred cChHHHHHHHHHH-HhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCC-------------CCCC-----Cccc-ccC
Q 012151 27 GHINPMLHLASIL-YSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPD-------------GFSE-----TEAS-VED 86 (470)
Q Consensus 27 GH~~p~l~La~~L-~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~-------------~~~~-----~~~~-~~~ 86 (470)
+.+.-.+..|+.| .+.|.+|.+.... ....+.+ . .++..+.++- .... +... ..+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~---~-~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~ 91 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRK---H-VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPG 91 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHC---C--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCC
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHH---h-CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHH
Confidence 6778889999999 8899999987763 3333332 1 2455555541 0000 0000 111
Q ss_pred HHHHHHHHHhh--------cchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecc
Q 012151 87 VAVFFTAINGK--------CIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTC 152 (470)
Q Consensus 87 ~~~~~~~~~~~--------~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~ 152 (470)
.. .+..+... ....+...++++.. .+.|+||.+. .+..+|+++|+|++.+.+.
T Consensus 92 ~~-~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~---------~G~~viVGg~---~~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 92 LE-SIEELLGVDIKIYPYDSEEEIEAAIKQAKA---------EGVDVIVGGG---VVCRLARKLGLPGVLIESG 152 (176)
T ss_dssp HH-HHHHHHT-EEEEEEESSHHHHHHHHHHHHH---------TT--EEEESH---HHHHHHHHTTSEEEESS--
T ss_pred HH-HHHHHhCCceEEEEECCHHHHHHHHHHHHH---------cCCcEEECCH---HHHHHHHHcCCcEEEEEec
Confidence 22 22222211 13455567777765 4899999995 3578899999999998764
No 443
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=22.10 E-value=2.8e+02 Score=28.01 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=74.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEeCCCCCccc-ccccCCCCCeeEEecCCCCCCCcccccCHHHHHHHH
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKG-FSVTIIHTDFNFSST-NYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTAI 94 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rG-h~V~~~~~~~~~~~~-~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
=|++..-|+.|-..-++.+|..++.+. -.|.+++-+-..+.. ..+.+...++....+..+. ........+......+
T Consensus 198 Lii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kirtg~-l~~~d~~~l~~a~~~l 276 (435)
T COG0305 198 LIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMRLLSSESGIESSKLRTGR-LSDDEWERLIKAASEL 276 (435)
T ss_pred EEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHhhccccccchhcccccc-ccHHHHHHHHHHHHHH
Confidence 367778899999999999999998864 559999987554433 3344455566654444332 1111111111111111
Q ss_pred Hh----------hcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCcc-c--h----------------HHHHhhcCCC
Q 012151 95 NG----------KCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWF-F--T----------------HTVAADFKLP 145 (470)
Q Consensus 95 ~~----------~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~-~--~----------------~~vA~~~giP 145 (470)
.+ .....++.-.+++..+ .+.++|+.|.+.. . . -.+|+.+++|
T Consensus 277 ~~~~i~IdD~~~~si~eir~~aRrlk~~--------~~l~~i~iDYLqLm~~~~~~~~r~qevs~iSr~LK~lAkEl~vp 348 (435)
T COG0305 277 SEAPIFIDDTPGLTITEIRSKARRLKLK--------HNLGLIVIDYLQLMTGGKKSENRKQEVSEISRSLKGLAKELGVP 348 (435)
T ss_pred hhCCeeecCCCcCCHHHHHHHHHHHHHh--------cCccEEEEEEEEeecccccchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 11 1223455566676665 4689999997652 1 1 2578999999
Q ss_pred eEEEe
Q 012151 146 TIVLQ 150 (470)
Q Consensus 146 ~v~~~ 150 (470)
++.++
T Consensus 349 vialS 353 (435)
T COG0305 349 VIALS 353 (435)
T ss_pred EEehh
Confidence 99853
No 444
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.97 E-value=1.2e+02 Score=28.96 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
+|+|.|+-.+..| .++|+.|.++||+|++....
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 5789999666544 57899999999999988753
No 445
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=21.91 E-value=5.8e+02 Score=26.60 Aligned_cols=109 Identities=12% Similarity=0.060 Sum_probs=63.1
Q ss_pred cChHHHHHHH-HHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecC-CCCCC-----------------CcccccCH
Q 012151 27 GHINPMLHLA-SILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFP-DGFSE-----------------TEASVEDV 87 (470)
Q Consensus 27 GH~~p~l~La-~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~-~~~~~-----------------~~~~~~~~ 87 (470)
|++.-.+.+| +.+...|++|.+... .....+.+ .-.+..+.++ ++++- ++.....-
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~----~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~ 111 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKS----RLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPA 111 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHH----hCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHH
Confidence 7788888888 547677898887665 34444442 1234444443 11110 00000011
Q ss_pred HHHHHHHHhh--------cchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccchHHHHhhcCCCeEEEecc
Q 012151 88 AVFFTAINGK--------CIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFFTHTVAADFKLPTIVLQTC 152 (470)
Q Consensus 88 ~~~~~~~~~~--------~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~~~~vA~~~giP~v~~~~~ 152 (470)
.+.+..+... ......+.++++.+ .+.++||.|. .+..+|+++|++.|.+.+.
T Consensus 112 ~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~---------~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 112 LRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA---------RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHhCCceEEEEecCHHHHHHHHHHHHH---------CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 1122222211 13455567777766 4899999996 4578899999999998764
No 446
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=21.81 E-value=97 Score=31.65 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=24.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
+||+|+-.+- --++-|.+|+++||+||++-..
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEecc
Confidence 3666665554 3478899999999999998774
No 447
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.80 E-value=1.5e+02 Score=28.67 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=31.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
..++|+..+|.|-..=+.++|++|.++|+.|.|++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 45888888888877778899999999999999988643
No 448
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=21.66 E-value=70 Score=30.82 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCccccc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNY 60 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 60 (470)
.++|+++.++-.|. -+|+.|.++||.|.+..-+.+.+..++
T Consensus 52 tl~IaIIGfGnmGq-----flAetli~aGh~li~hsRsdyssaa~~ 92 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQ-----FLAETLIDAGHGLICHSRSDYSSAAEK 92 (480)
T ss_pred ceEEEEEecCcHHH-----HHHHHHHhcCceeEecCcchhHHHHHH
Confidence 57899988877664 479999999999998877665555554
No 449
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=21.65 E-value=5.7e+02 Score=22.85 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
.+-|+|=-.-+.|-..-.-.|++.|.++|.+|++.-.|..
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~ 42 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGG 42 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 3567777777889999999999999999999999887766
No 450
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.57 E-value=2.9e+02 Score=28.99 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.1
Q ss_pred cceeecccCch------hhHHhhhcCCceecCC
Q 012151 362 VGGFWTHSGWN------STLESMCEGVPMICQP 388 (470)
Q Consensus 362 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 388 (470)
+.++++|.|-| .+++|...++|||++.
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 33499998855 7889999999999984
No 451
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=21.52 E-value=3.4e+02 Score=27.85 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=61.2
Q ss_pred eccChHh---hhccCCcceeec--ccCchhh-HHhhhcCCc---eecCCCccchhhhHHHHHhhhh-eeEEcCCcccHHH
Q 012151 349 KWAPQQE---VLAHPAVGGFWT--HSGWNST-LESMCEGVP---MICQPYLPDQMVNARYVSHFWR-VGLHSEWKLERME 418 (470)
Q Consensus 349 ~~~p~~~---lL~~~~~~~~I~--HGG~gs~-~eal~~GvP---~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~ 418 (470)
.-+|+.+ ++..+++ ++|| ..|+|.+ .|-+++..+ +|++- ++--| .+. |+ ..+.+++ .+.++
T Consensus 359 ~~~~~~~~~aly~~aDv-~lvTslrDGmNLva~Eyva~q~~~~GvLiLS----efaGa--a~~-L~~~al~VNP-~d~~~ 429 (474)
T PF00982_consen 359 RSLSFEELLALYRAADV-ALVTSLRDGMNLVAKEYVACQDDNPGVLILS----EFAGA--AEQ-LSEAALLVNP-WDIEE 429 (474)
T ss_dssp S---HHHHHHHHHH-SE-EEE--SSBS--HHHHHHHHHS-TS--EEEEE----TTBGG--GGT--TTS-EEE-T-T-HHH
T ss_pred cCCCHHHHHHHHHhhhh-EEecchhhccCCcceEEEEEecCCCCceEee----ccCCH--HHH-cCCccEEECC-CChHH
Confidence 4456555 5666777 4454 5788854 577777655 33322 22222 223 55 3377777 78899
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012151 419 IERAIRRVMVEAEGQEMRARIMHLKEKVDFCLRKGGSSHQSLERLIDHIL 468 (470)
Q Consensus 419 l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (470)
++++|.+.|+=.. ++-+++.+++.+.+.. .....=++.++++|+
T Consensus 430 ~A~ai~~AL~M~~-~Er~~r~~~~~~~v~~-----~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 430 VADAIHEALTMPP-EERKERHARLREYVRE-----HDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHHT--H-HHHHHHHHHHHHHHHH-----T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHhHh-----CCHHHHHHHHHHHhh
Confidence 9999999988311 5667777888888876 788888999998886
No 452
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.51 E-value=1.5e+02 Score=28.57 Aligned_cols=60 Identities=15% Similarity=0.042 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc-cccC--CCCCeeEEec
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN-YFSC--NYPHFDFHSF 73 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~-~~~~--~~~gi~~~~~ 73 (470)
++.-|+|+-.-+.|-....-.||+.|.+.|+.|.++..+-++.-.. ++.. +..|+.++.-
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 3567888888999999999999999999999999999986654332 2110 1246666654
No 453
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.51 E-value=1.4e+02 Score=27.33 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHhcccCCCCCCCCCcEEEeCCCccc---hHHHHhhcCCCeEEEec
Q 012151 106 LAEILMKSKADQNKDSSPCCLITDAFWFF---THTVAADFKLPTIVLQT 151 (470)
Q Consensus 106 l~~l~~~~~~~~~~~~~pDlvi~D~~~~~---~~~vA~~~giP~v~~~~ 151 (470)
++++... +||+||....... ...+.+..|+|++.+..
T Consensus 67 ~E~i~~l---------~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 67 YEKIAAL---------KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHHhc---------CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
No 454
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=21.50 E-value=3.9e+02 Score=22.98 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=62.1
Q ss_pred CCCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcccCCCchh-HHHHhcCCceeeeccChHhhhcc
Q 012151 281 TPKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRPGLVSGAEWVEPLPKG-FLEMLDGRGCIVKWAPQQEVLAH 359 (470)
Q Consensus 281 ~~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~p~~~lL~~ 359 (470)
.++.+-.+.+|.+. +.++.-++.++.+++..-... .+.. .. . ....+.+..++|+.
T Consensus 35 ~g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~----------~~~~~~~-~-----~~~~~~~l~ell~~ 91 (178)
T PF02826_consen 35 RGKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP----------KPEEGAD-E-----FGVEYVSLDELLAQ 91 (178)
T ss_dssp TTSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC----------HHHHHHH-H-----TTEEESSHHHHHHH
T ss_pred CCCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC----------Chhhhcc-c-----ccceeeehhhhcch
Confidence 35668888888886 356666777888876654221 1111 10 0 23377799999999
Q ss_pred CCcceeecccCchhhHHhhhcCCceecCCCccchhhhHHHHHhhhheeEEcC---C--cccHHHHHHHHH
Q 012151 360 PAVGGFWTHSGWNSTLESMCEGVPMICQPYLPDQMVNARYVSHFWRVGLHSE---W--KLERMEIERAIR 424 (470)
Q Consensus 360 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~---~--~~~~~~l~~ai~ 424 (470)
+++ ++.|.-.+. ...+..|+..++. ++=|..+- + -++++.|.++++
T Consensus 92 aDi--v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADI--VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -SE--EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhh--hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHh
Confidence 998 766654221 1367888888888 78776552 2 567777777764
No 455
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=21.48 E-value=2.9e+02 Score=23.85 Aligned_cols=27 Identities=7% Similarity=-0.134 Sum_probs=17.3
Q ss_pred EEEEcCcccccCHHHHHHHHHHHHhCCCCEEEE
Q 012151 286 VYISFGSVIAINKDGFLEIAWGVANSRMPFLWV 318 (470)
Q Consensus 286 I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~ 318 (470)
+++.+|+. +...+.+.+++.+.++...
T Consensus 2 l~~~~~~~------~~~~~~~~l~~~G~~~~~~ 28 (184)
T cd01743 2 LLIDNYDS------FTYNLVQYLRELGAEVVVV 28 (184)
T ss_pred EEEeCCCc------cHHHHHHHHHHcCCceEEE
Confidence 45556555 4566777888777776544
No 456
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=21.33 E-value=1.6e+02 Score=23.53 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 51 (470)
...+++++++.. +...+..++.|.+.|.+++++-.
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 346889988876 46779999999999999998765
No 457
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=21.23 E-value=1.2e+02 Score=29.41 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=25.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
|+|+|+..+.-| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 379999777655 46788899999999998864
No 458
>CHL00194 ycf39 Ycf39; Provisional
Probab=21.21 E-value=1.8e+02 Score=27.79 Aligned_cols=33 Identities=9% Similarity=0.247 Sum_probs=22.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 16 RRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 16 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
|+|++.. +.|.+ -..|+++|.++||+|+.++-.
T Consensus 1 MkIlVtG--atG~i--G~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVIG--ATGTL--GRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEEC--CCcHH--HHHHHHHHHHCCCeEEEEEcC
Confidence 3566653 33433 346888999999999998753
No 459
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=21.03 E-value=1.3e+02 Score=26.61 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTII 49 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~ 49 (470)
.++|++.-++. --..+|+.|.+.||+|++.
T Consensus 28 gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 28 GKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCEEEEECCCH-----HHHHHHHHHHHCCCEEEEE
Confidence 46888887764 3467899999999999954
No 460
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=20.99 E-value=1.7e+02 Score=30.84 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=37.5
Q ss_pred hhHHhhhcCCceecCCCcc-chhhhHH--HHHhhhheeEEcCCcccHHHHHHHHHHHhc-----cc-hhHHHHHHHHHHH
Q 012151 373 STLESMCEGVPMICQPYLP-DQMVNAR--YVSHFWRVGLHSEWKLERMEIERAIRRVMV-----EA-EGQEMRARIMHLK 443 (470)
Q Consensus 373 s~~eal~~GvP~v~~P~~~-DQ~~na~--rv~~~~G~G~~l~~~~~~~~l~~ai~~vl~-----~~-~~~~~~~~a~~l~ 443 (470)
|-+||+++|||.|.-=+.+ -++.+-. .-.. .|+-+.-+..-+.++..+.+.+.|- ++ +-...|+++++++
T Consensus 485 TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~-~GV~VvdR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS 563 (633)
T PF05693_consen 485 TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEE-YGVYVVDRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLS 563 (633)
T ss_dssp HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGG-GTEEEE-SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHG
T ss_pred ChHHHhhcCCceeeccchhHHHHHHHhhccCcC-CcEEEEeCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8899999999999977654 2222211 1234 3666555445555555555555543 11 1134566666665
Q ss_pred HH
Q 012151 444 EK 445 (470)
Q Consensus 444 ~~ 445 (470)
+.
T Consensus 564 ~~ 565 (633)
T PF05693_consen 564 DL 565 (633)
T ss_dssp GG
T ss_pred Hh
Confidence 54
No 461
>PRK05246 glutathione synthetase; Provisional
Probab=20.97 E-value=1.3e+02 Score=28.97 Aligned_cols=40 Identities=10% Similarity=0.009 Sum_probs=30.2
Q ss_pred CEEEEEcCCCc---cChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012151 16 RRVILFPLPFQ---GHINPMLHLASILYSKGFSVTIIHTDFNF 55 (470)
Q Consensus 16 ~~il~~~~~~~---GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 55 (470)
|+|+|+.-|-. -....+..|+++-+++||+|.++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~ 44 (316)
T PRK05246 2 MKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLS 44 (316)
T ss_pred ceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcE
Confidence 46777776532 24466789999999999999999996443
No 462
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=20.85 E-value=2.2e+02 Score=25.06 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=23.5
Q ss_pred CCCcEEEeCCCc--cchHHHHhhcCCCeEEEe
Q 012151 121 SSPCCLITDAFW--FFTHTVAADFKLPTIVLQ 150 (470)
Q Consensus 121 ~~pDlvi~D~~~--~~~~~vA~~~giP~v~~~ 150 (470)
.++|+|+.=... +.+..+|..+|+|++.+-
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 378999865333 678899999999999864
No 463
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.84 E-value=1.4e+02 Score=26.62 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
..+++++-.+.-| ...++.|.+.|++|+++.+..
T Consensus 10 ~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 10 NKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCCC
Confidence 4578888766533 677899999999999998754
No 464
>PRK13973 thymidylate kinase; Provisional
Probab=20.81 E-value=6e+02 Score=22.55 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDF 53 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 53 (470)
++-|+|--..+.|-..-+-.|++.|.++|+.|.....+.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~ 41 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPG 41 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 346778888888999999999999999999998776554
No 465
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.76 E-value=7.3e+02 Score=23.56 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=24.9
Q ss_pred CCccChHHHHHHHHHHHh-CCCeEEEEeCC
Q 012151 24 PFQGHINPMLHLASILYS-KGFSVTIIHTD 52 (470)
Q Consensus 24 ~~~GH~~p~l~La~~L~~-rGh~V~~~~~~ 52 (470)
--+|++.-.-.||+.|++ .||+|.+-+-+
T Consensus 12 DNyGDIGV~wRLARql~re~G~~VrLWvDd 41 (370)
T COG4394 12 DNYGDIGVAWRLARQLKREHGWQVRLWVDD 41 (370)
T ss_pred cccchhHHHHHHHHHHHHHhCceeeeecCC
Confidence 347999999999999976 59999998864
No 466
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=20.74 E-value=1.1e+02 Score=26.43 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=26.2
Q ss_pred ccChHH-HHHHHHHHHh-CCCeEEEEeCCCCCcccc
Q 012151 26 QGHINP-MLHLASILYS-KGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 26 ~GH~~p-~l~La~~L~~-rGh~V~~~~~~~~~~~~~ 59 (470)
.||... ...+.++|.+ +||+|.++.++.-.+.+.
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 378766 8899999984 599999999976654443
No 467
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=20.70 E-value=1.6e+02 Score=30.23 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=35.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecC--CCCCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFP--DGFSE 79 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~--~~~~~ 79 (470)
++++.-.- =.-++.||+.|.+.|+++. ++........+ .|+.+..+. +++|+
T Consensus 6 ~aLISVsD----K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e-----~GI~v~~V~k~TgfpE 59 (513)
T PRK00881 6 RALISVSD----KTGIVEFAKALVELGVEIL--STGGTAKLLAE-----AGIPVTEVSDVTGFPE 59 (513)
T ss_pred EEEEEEeC----cccHHHHHHHHHHCCCEEE--EcchHHHHHHH-----CCCeeEEeecccCCch
Confidence 45554443 3448899999999999984 45566666665 788777665 35554
No 468
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=20.55 E-value=1.6e+02 Score=28.46 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=32.7
Q ss_pred EEEE--EcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012151 17 RVIL--FPLPFQGHINPMLHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 17 ~il~--~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 54 (470)
-|.+ ++.++.|-.--.+.|++.|.++|++|.+++-...
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 3444 7889999999999999999999999999987554
No 469
>PRK03094 hypothetical protein; Provisional
Probab=20.45 E-value=93 Score=23.04 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 012151 32 MLHLASILYSKGFSVTIIHT 51 (470)
Q Consensus 32 ~l~La~~L~~rGh~V~~~~~ 51 (470)
+-.+.+.|+++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 34689999999999986654
No 470
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=20.37 E-value=1.4e+02 Score=28.23 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=24.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 012151 17 RVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTD 52 (470)
Q Consensus 17 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 52 (470)
+|.|+-.+..| .++|+.|.++||+|+++--.
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 57777666544 58899999999999997654
No 471
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.36 E-value=2.9e+02 Score=21.86 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=29.3
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccc
Q 012151 24 PFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTN 59 (470)
Q Consensus 24 ~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 59 (470)
...|...-++..++.++++|..|..++.....+..+
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 55 SNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 444788889999999999999999999866655554
No 472
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=20.32 E-value=2.4e+02 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=22.2
Q ss_pred cCCcceeecccCc------hhhHHhhhcCCceecCCCc
Q 012151 359 HPAVGGFWTHSGW------NSTLESMCEGVPMICQPYL 390 (470)
Q Consensus 359 ~~~~~~~I~HGG~------gs~~eal~~GvP~v~~P~~ 390 (470)
.+.+ +++|.|. +++.+|...++|+|++.-.
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 3455 8888874 4678889999999998743
No 473
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=20.30 E-value=64 Score=27.59 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=23.1
Q ss_pred cCCcceeecccCch------hhHHhhhcCCceecCCC
Q 012151 359 HPAVGGFWTHSGWN------STLESMCEGVPMICQPY 389 (470)
Q Consensus 359 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 389 (470)
.+.+ +++|+|-| .+.+|...++|||++.-
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3555 88898855 67799999999999953
No 474
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=20.30 E-value=4.5e+02 Score=24.82 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCCC
Q 012151 33 LHLASILYSKGFSVTIIHTDFN 54 (470)
Q Consensus 33 l~La~~L~~rGh~V~~~~~~~~ 54 (470)
.+|...|.+.||+|++++-...
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCc
Confidence 4688899999999999996433
No 475
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=20.20 E-value=1.9e+02 Score=23.94 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=29.8
Q ss_pred CCeEEEEEcCcccccCHHHHHHHHHHHHhCCCCEEEEEcC
Q 012151 282 PKSVVYISFGSVIAINKDGFLEIAWGVANSRMPFLWVVRP 321 (470)
Q Consensus 282 ~~~~I~vs~Gs~~~~~~~~~~~i~~al~~~~~~~i~~~~~ 321 (470)
...+|++++||-.....+.++.+++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 3458999999998877888888888884 35677776543
No 476
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=20.20 E-value=1.4e+02 Score=26.79 Aligned_cols=44 Identities=11% Similarity=-0.024 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCccccc
Q 012151 15 GRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNY 60 (470)
Q Consensus 15 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 60 (470)
+.||++...++ --.+-...|.+.|. +||+|.++.++...+.+..
T Consensus 19 ~k~IllgVtGS-IAAyk~~~lvr~L~-~g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 19 KPRILLAASGS-VAAIKFGNLCHCFS-EWAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHhc-CCCeEEEEEChhHhhhcCH
Confidence 45777766655 45566678999997 5999999999877777664
No 477
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=20.07 E-value=2.9e+02 Score=25.05 Aligned_cols=118 Identities=9% Similarity=-0.016 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccCCCCCeeEEecCCCCCCCcccccCHHHHHHH
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGFSVTIIHTDFNFSSTNYFSCNYPHFDFHSFPDGFSETEASVEDVAVFFTA 93 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (470)
.++-|+++..|++|-..-...|++-|.-.|++..++--..+++.... . + .+.+.....+. +..+.
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~-----~-------~--~~~~ff~p~n~-~~~~~ 75 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSG-----A-------P--QDAEFFDPDNE-EAKKL 75 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHS-----S----------S-GGGGSTT-H-HHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccc-----c-------c--cccccCCCCCh-HHHHH
Confidence 36789999999999999999999999999999999988766665553 1 0 00000000111 11111
Q ss_pred HHhhcchHHHHHHHHHHhcccCCCCCCCCCcEEEeCCCccc------hHHHHhhcCCCeEEEecccHH
Q 012151 94 INGKCIMPFRDCLAEILMKSKADQNKDSSPCCLITDAFWFF------THTVAADFKLPTIVLQTCGVS 155 (470)
Q Consensus 94 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvi~D~~~~~------~~~vA~~~giP~v~~~~~~~~ 155 (470)
=.+.+...+.+++..+.+. .-++.|.|....- ........++.++.+-+...-
T Consensus 76 R~~~a~~~l~dl~~~l~~~---------~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D 134 (222)
T PF01591_consen 76 REQIAKEALEDLIEWLQEE---------GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDD 134 (222)
T ss_dssp HHHHHHHHHHHHHHHHHTS-----------SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---
T ss_pred HHHHHHHHHHHHHHHHhcC---------CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCC
Confidence 1122345566676666543 5589999975532 234556778888887665433
No 478
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=20.00 E-value=3.3e+02 Score=24.12 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeC
Q 012151 14 NGRRVILFPLPFQGHINPMLHLASILYSKGF-SVTIIHT 51 (470)
Q Consensus 14 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~V~~~~~ 51 (470)
+..+|+++-.++-|- .+|+.|++.|. +++++=.
T Consensus 20 ~~~~VlviG~GglGs-----~ia~~La~~Gv~~i~lvD~ 53 (202)
T TIGR02356 20 LNSHVLIIGAGGLGS-----PAALYLAGAGVGTIVIVDD 53 (202)
T ss_pred cCCCEEEECCCHHHH-----HHHHHHHHcCCCeEEEecC
Confidence 356899998887663 67899999996 7777554
Done!