BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012152
         (470 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GUI4|UGPI6_ARATH Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis
           thaliana GN=At1g61900 PE=1 SV=1
          Length = 433

 Score =  289 bits (740), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 164/388 (42%), Positives = 227/388 (58%), Gaps = 17/388 (4%)

Query: 59  EPIEISPAVIP---PYPYAGEPLP-PMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASD 114
           +P E  P + P   P P+     P PM P   +T  P L+G C +NFSA  S++Q T+ +
Sbjct: 28  KPEEFLPEISPDTSPQPFLPFIAPSPMVPYINSTM-PKLSGLCSLNFSASESLIQTTSHN 86

Query: 115 CSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGAN 174
           C    APL+ NV+CCPQL + L I  G  S ++  L L  T +  C SD+  IL  +GA+
Sbjct: 87  CWTVFAPLLANVMCCPQLDATLTIILGKASKETGLLALNRTQSKHCLSDLEQILVGKGAS 146

Query: 175 HTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIME 234
             +  +CS+ S NLT  SCPV +V  FE  V+T+KLL AC  +DP+KECC   CQ AI++
Sbjct: 147 GQLNKICSIHSSNLTSSSCPVINVDEFESTVDTAKLLLACEKIDPVKECCEEACQNAILD 206

Query: 235 AALQIS-GTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACK 293
           AA  IS     T T+N          D +NDCK V   +L++KL         R L+ CK
Sbjct: 207 AATNISLKASETLTDNS---------DRINDCKNVVNRWLATKLDPSRVKETLRGLANCK 257

Query: 294 VNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGS 353
           +N+VCPL F     +   C N  +    CC ++ +Y++ +QKQ LITN QA+ CA   G+
Sbjct: 258 INRVCPLVFPHMKHIGGNCSNELSNQTGCCRAMESYVSHLQKQTLITNLQALDCATSLGT 317

Query: 354 MLRKEGVMTNIYELCDVDLKDFSIQAYGQQ-GCLLRSLPADVVLDNITGYSFTCDLTDNI 412
            L+K  +  NI+ +C + LKDFS+Q   Q+ GCLL SLP+D + D  TG SFTCDL DNI
Sbjct: 318 KLQKLNITKNIFSVCHISLKDFSLQVGNQESGCLLPSLPSDAIFDKDTGISFTCDLNDNI 377

Query: 413 AAPWPASSSASSLSLCAPEMSLPALPTS 440
            APWP+SS +S+ + C   + +PALP +
Sbjct: 378 PAPWPSSSLSSAST-CKKPVRIPALPAA 404


>sp|Q9MBB3|RS3A_DAUCA 40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1
          Length = 261

 Score = 36.6 bits (83), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 352 GSMLRKEGVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDN 411
           G+ +  EG+   ++E+C  DL+    QAY +       +    VL N  G  FT D   +
Sbjct: 53  GTKIASEGLKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRS 112

Query: 412 IAAPW 416
           +   W
Sbjct: 113 LVRKW 117


>sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A
           PE=2 SV=2
          Length = 262

 Score = 35.8 bits (81), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 30/65 (46%)

Query: 352 GSMLRKEGVMTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDN 411
           G+ +  EG+   ++E+   DL++   QAY +       +    VL N  G SFT D   +
Sbjct: 53  GTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRS 112

Query: 412 IAAPW 416
           +   W
Sbjct: 113 LVKKW 117


>sp|B2VG22|MUTS_ERWT9 DNA mismatch repair protein MutS OS=Erwinia tasmaniensis (strain
           DSM 17950 / Et1/99) GN=mutS PE=3 SV=1
          Length = 853

 Score = 33.9 bits (76), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 133 GSLLHIFQGFYSMKSDKLV-----LQNTVANDCFSDILSILASRGA--NHTIPTLCSVTS 185
           G  L + +  Y    D+L+     LQ++ A     D+L+ LA R    N++ PTL     
Sbjct: 520 GKALSLEKALYEQLFDRLLPHLAALQDSAAALAELDVLTNLAERAWTLNYSCPTLSDKPG 579

Query: 186 LNLTGGSCPVKDVV 199
           + LTGG  PV + V
Sbjct: 580 IKLTGGRHPVVEQV 593


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,115,425
Number of Sequences: 539616
Number of extensions: 6613448
Number of successful extensions: 17517
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 17400
Number of HSP's gapped (non-prelim): 115
length of query: 470
length of database: 191,569,459
effective HSP length: 121
effective length of query: 349
effective length of database: 126,275,923
effective search space: 44070297127
effective search space used: 44070297127
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)