Query 012152
Match_columns 470
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 03:47:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e2f_A Diapausin; Ca-channel b 40.9 7.8 0.00027 28.6 0.7 13 213-225 10-23 (41)
2 3kdg_A DNA mismatch repair pro 17.8 96 0.0033 27.4 3.6 30 275-304 151-180 (197)
3 4a54_B DCP2, mRNA decapping co 17.2 69 0.0024 24.4 2.1 10 65-74 39-48 (52)
4 3ncv_A DNA mismatch repair pro 16.3 1.1E+02 0.0036 28.0 3.6 37 267-303 158-202 (220)
5 2bpt_B Nucleoporin NUP1; nucle 11.1 1.5E+02 0.005 21.5 2.3 31 84-120 3-33 (39)
6 3e0j_B DNA polymerase subunit 10.5 63 0.0021 28.6 0.3 29 261-289 14-44 (144)
7 3syy_A Exonuclease; digest dou 9.7 1.1E+02 0.0037 27.5 1.5 20 327-346 132-151 (216)
8 1upt_B Golgi autoantigen, golg 9.5 1.5E+02 0.0051 23.4 2.0 23 265-291 10-32 (60)
9 2ao6_B NCOA-2, 14-MER fragment 9.2 1.1E+02 0.0036 20.8 0.9 22 267-291 3-24 (26)
10 3sm4_A Exonuclease; homologous 8.5 1.3E+02 0.0044 27.4 1.5 19 327-345 155-173 (229)
No 1
>2e2f_A Diapausin; Ca-channel blocker, antifungal peptide, structural genomics, antifungal protein; NMR {Gastrophysa atrocyanea}
Probab=40.94 E-value=7.8 Score=28.62 Aligned_cols=13 Identities=46% Similarity=1.301 Sum_probs=11.0
Q ss_pred hhccCCcch-hhhh
Q 012152 213 ACSTVDPLK-ECCR 225 (470)
Q Consensus 213 AC~~VDPlk-ECC~ 225 (470)
-|+.|||-| ||||
T Consensus 10 vcsri~pekdeccr 23 (41)
T 2e2f_A 10 VCPRIVPERHECCR 23 (41)
T ss_dssp STTSCSTTTHHHHH
T ss_pred cccCcCcchhHHHH
Confidence 589999987 7887
No 2
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=17.76 E-value=96 Score=27.38 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=26.4
Q ss_pred cCCCHHHHHHHHHhhccCccCcccccCCCC
Q 012152 275 SKLSAEAANSAFRILSACKVNKVCPLDFKQ 304 (470)
Q Consensus 275 ~KL~~~~An~~~R~LS~CkVNkvCPL~F~~ 304 (470)
.+|+.+++++.+|.|..|+.--.||-.=|-
T Consensus 151 ~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt 180 (197)
T 3kdg_A 151 RHLRNDEIKALLDDLRSTSDPFTCPHGRPI 180 (197)
T ss_dssp CCCCHHHHHHHHHHHHHSSCTTBCTTSCBC
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcCCCCCcE
Confidence 589999999999999999999999975443
No 3
>4a54_B DCP2, mRNA decapping complex subunit 2; RNA binding protein-hydrolase complex; NMR {Schizosaccharomyces pombe}
Probab=17.18 E-value=69 Score=24.37 Aligned_cols=10 Identities=30% Similarity=0.683 Sum_probs=8.0
Q ss_pred CCCCCCCCCC
Q 012152 65 PAVIPPYPYA 74 (470)
Q Consensus 65 P~~~P~~~~P 74 (470)
|+.+|||++-
T Consensus 39 pstfpqppve 48 (52)
T 4a54_B 39 PSTFPQPPVE 48 (52)
T ss_dssp CCCCCCCSSC
T ss_pred CCCCCCCCcc
Confidence 8889998764
No 4
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=16.28 E-value=1.1e+02 Score=28.02 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=30.3
Q ss_pred hhHHHHhh--------cCCCHHHHHHHHHhhccCccCcccccCCC
Q 012152 267 GVAYSYLS--------SKLSAEAANSAFRILSACKVNKVCPLDFK 303 (470)
Q Consensus 267 ~VVl~wLa--------~KL~~~~An~~~R~LS~CkVNkvCPL~F~ 303 (470)
.-++.|+| .+|+.+++++.+|.|..|+.-..||-.=|
T Consensus 158 ~~~~as~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRP 202 (220)
T 3ncv_A 158 NRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRP 202 (220)
T ss_dssp HHHHHHHTTCSSSCSSCCCCHHHHHHHHHHHHTSTTTTBCTTSCB
T ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhCCCCCcCCCCCc
Confidence 34556665 57999999999999999999999996543
No 5
>2bpt_B Nucleoporin NUP1; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae}
Probab=11.09 E-value=1.5e+02 Score=21.55 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=15.0
Q ss_pred CCCCCCCCCcccccccccccchhhhhhhccccccccc
Q 012152 84 TFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLA 120 (470)
Q Consensus 84 ~f~n~~~PkLsG~C~lNFsA~~~~m~~TA~DC~~~fA 120 (470)
.|+.+++|+ .|||-+.+=|+.||.+-.-|--
T Consensus 3 sftpstvpn------infsglnggitntatnalrpsd 33 (39)
T 2bpt_B 3 SFTPSTVPN------INFSGLNGGITNTATNALRPSD 33 (39)
T ss_dssp SCCCCSSCC------CCCC---------CCC-CCGGG
T ss_pred cccccccCc------ccccccccccccccccccCchh
Confidence 367778886 5999999999999987665543
No 6
>3e0j_B DNA polymerase subunit delta-3; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=10.53 E-value=63 Score=28.57 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=21.3
Q ss_pred cCCcchhhHHHHhhcCCC--HHHHHHHHHhh
Q 012152 261 ALNDCKGVAYSYLSSKLS--AEAANSAFRIL 289 (470)
Q Consensus 261 ~v~DCK~VVl~wLa~KL~--~~~An~~~R~L 289 (470)
+.++-|-|=+||||+.|+ ...||++|.-.
T Consensus 14 V~de~k~VTYr~LSr~l~VhvN~AK~mL~ef 44 (144)
T 3e0j_B 14 VTDQNKIVTYKWLSYTLGVHVNQAKQMLYDY 44 (144)
T ss_dssp HTTTCCCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHhCCceEEHHHHHHHhCCCHHHHHHHHHHH
Confidence 345566788999999765 67888887543
No 7
>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity, hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A* 3sz5_A
Probab=9.72 E-value=1.1e+02 Score=27.47 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=17.3
Q ss_pred hHHHHHHhHHhhhhhhhHHH
Q 012152 327 NAYIAGVQKQMLITNKQAII 346 (470)
Q Consensus 327 ~sYvs~lQkQ~lITNlQAl~ 346 (470)
..|..-+|-||+||+++..+
T Consensus 132 ~~Y~~QvQ~qm~Vtg~~~~~ 151 (216)
T 3syy_A 132 PEYIKQMQTQMACTGRQWCD 151 (216)
T ss_dssp HHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHhcCCCEEE
Confidence 67999999999999987544
No 8
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=9.51 E-value=1.5e+02 Score=23.39 Aligned_cols=23 Identities=9% Similarity=0.443 Sum_probs=16.0
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHhhcc
Q 012152 265 CKGVAYSYLSSKLSAEAANSAFRILSA 291 (470)
Q Consensus 265 CK~VVl~wLa~KL~~~~An~~~R~LS~ 291 (470)
=|||+++|+-.+ +.+++++.+..
T Consensus 10 LrNVl~~ym~g~----~~~~m~kaI~a 32 (60)
T 1upt_B 10 LRKVLFEYMMGR----ETKTMAKVITT 32 (60)
T ss_dssp HHHHHHHHHTTS----SHHHHHHHHHH
T ss_pred HHHHHHHHHHcc----cHHHHHHHHHH
Confidence 489999999877 44555555543
No 9
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=9.19 E-value=1.1e+02 Score=20.78 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=16.1
Q ss_pred hhHHHHhhcCCCHHHHHHHHHhhcc
Q 012152 267 GVAYSYLSSKLSAEAANSAFRILSA 291 (470)
Q Consensus 267 ~VVl~wLa~KL~~~~An~~~R~LS~ 291 (470)
|-.+|||- +-++.|.++|-|-+
T Consensus 3 ~~LLRyLL---DkDdgnaalryllg 24 (26)
T 2ao6_B 3 NALLRYLL---DKDDGNAALRYLLG 24 (26)
T ss_pred cHHHHHHH---ccccchHHHHHHhc
Confidence 56788884 55778888987743
No 10
>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A
Probab=8.48 E-value=1.3e+02 Score=27.40 Aligned_cols=19 Identities=47% Similarity=0.583 Sum_probs=17.2
Q ss_pred hHHHHHHhHHhhhhhhhHH
Q 012152 327 NAYIAGVQKQMLITNKQAI 345 (470)
Q Consensus 327 ~sYvs~lQkQ~lITNlQAl 345 (470)
+.|...+|-||.||+++..
T Consensus 155 ~~Y~~QvQ~qm~vtg~~~~ 173 (229)
T 3sm4_A 155 SAYMAQVQYSMWVTRKNAW 173 (229)
T ss_dssp HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHhcCCCEE
Confidence 7899999999999998864
Done!