BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012154
(470 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
Length = 403
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 287/400 (71%), Positives = 318/400 (79%), Gaps = 19/400 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP+YC+TLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+SLS+RGPS SLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
G VELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKE ASSSSE E NDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAASSSSETENNDELEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
ALLNYRLKEKMA+A++ + F +KFP+QN+R SPQ P TSKILPL C KT R+R
Sbjct: 181 ALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSPQLPPVATSKILPLICQKTPPRNR 240
Query: 241 PASSGANEKPAQ----------PQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIA 290
P S AN+ P Q QP + R VRPQ+FPAAGA PYVPIRQ+RT GIA
Sbjct: 241 PPSPTANDDPRQQHQVKNPVPPSQPLALDVRAVRPQRFPAAGAVPYVPIRQFRTPYHGIA 300
Query: 291 PPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLT 350
PPVT+R VP FSA PPS LPPQ++RAP +RIAP V VRQAVPV+AAPPV ++D L
Sbjct: 301 PPVTIRNAVPVFSA----PPSGLPPQVIRAPHMRIAPPVCVRQAVPVFAAPPVRKEDPLV 356
Query: 351 VRKEDPPTTPAPAQKVDSWTVFPPAILKDLPTVTAAAIQK 390
VRKEDP P+ S PA +++ + TA +Q+
Sbjct: 357 VRKEDPSAASLPSLPTKS-----PAHVEETGSATANDLQE 391
>gi|357453939|ref|XP_003597250.1| Ribonuclease [Medicago truncatula]
gi|355486298|gb|AES67501.1| Ribonuclease [Medicago truncatula]
Length = 408
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 280/372 (75%), Positives = 309/372 (83%), Gaps = 20/372 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+SLSHRGPS SLAA+ILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
GIVELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKETASSS+EPE NDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
ALLNYRLKEKM+M S ++ IPF +KF +QN RPTS Q P ATTSKILPL C KT R+R
Sbjct: 181 ALLNYRLKEKMSM-SNPNARIPFQKKFQIQNIRPTSSQSP-ATTSKILPLICQKTGPRNR 238
Query: 241 PASSGANEKP----------------AQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRT 284
P+S+ NE P QPQ E RV RP +FPAAGA PYVPIRQ R
Sbjct: 239 PSSATPNENPRSRHPQAAATSDKSILQQPQSSAIESRVTRPLRFPAAGAPPYVPIRQMR- 297
Query: 285 SCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVH 344
C GIAP V+VRT +P FSAPP PPP+++ Q++RAP VRIAP V++RQAVPV+AAPP+
Sbjct: 298 PCHGIAPAVSVRTVIPVFSAPPLPPPTSV-HQIIRAPPVRIAPPVSIRQAVPVFAAPPLR 356
Query: 345 RDDSLTVRKEDP 356
+D+ ++K+ P
Sbjct: 357 KDEPAPIQKDLP 368
>gi|225435325|ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 413
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/410 (70%), Positives = 318/410 (77%), Gaps = 29/410 (7%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP+YC+TLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+SLS+RGPS SLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
G VELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKE A+SSSE E NDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAANSSSETENNDELEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
ALLNYRLKEKMA+A++ + F +KFP+QN+R SPQ P TSKILPL C KT R+R
Sbjct: 181 ALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSPQLPPVATSKILPLICQKTPPRNR 240
Query: 241 PASSGAN-------------------EKPAQP-QPYGSEGRVVRPQKFPAAGAAPYVPIR 280
P S AN E P P QP + R VRPQ+FPAAGA PYVPIR
Sbjct: 241 PPSPTANDGSMPSSQPRSRPTSTTSSENPVPPSQPLALDVRAVRPQRFPAAGAVPYVPIR 300
Query: 281 QYRTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAA 340
Q+RT GIAPPVT+R VP FSA PPS LPPQ++RAP +RIAP V VRQAVPV+AA
Sbjct: 301 QFRTPYHGIAPPVTIRNAVPVFSA----PPSGLPPQVIRAPHMRIAPPVCVRQAVPVFAA 356
Query: 341 PPVHRDDSLTVRKEDPPTTPAPAQKVDSWTVFPPAILKDLPTVTAAAIQK 390
PPV ++D L VRKEDP P+ S PA +++ + TA +Q+
Sbjct: 357 PPVRKEDPLVVRKEDPSAASLPSLPTKS-----PAHVEETGSATANDLQE 401
>gi|356543448|ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 278/381 (72%), Positives = 310/381 (81%), Gaps = 17/381 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+SLSHRGPS SLAA+ILDETGVYKNLLQEIAQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
GIVELAGI FTGEPAKNKKQAEKNAAMAAW++LKQLAKETASSS+EPE NDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDELEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
ALLNYRLKEKMAM S ++P+ F ++F +QN RP S QPP AT+SKILPL C KTA R +
Sbjct: 181 ALLNYRLKEKMAM-SNPNAPVSFHKRFQIQNPRPISSQPPPATSSKILPLICQKTAPRSK 239
Query: 241 PA-SSGANEKPAQ---------------PQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRT 284
P+ ++ ANE P PQ E R RP KF AAGAAPYVPIRQ R
Sbjct: 240 PSLATTANESPRSRHPQAAMTSDNSTLPPQSCSLESRATRPLKFRAAGAAPYVPIRQMRP 299
Query: 285 SCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVH 344
SC+ IAPPVT+RT VP F+ PP PPP+++P +RAP VR+AP VT+RQAVPVYAAPP
Sbjct: 300 SCQRIAPPVTIRTVVPAFATPPCPPPASVPHPAIRAPPVRVAPPVTIRQAVPVYAAPPSK 359
Query: 345 RDDSLTVRKEDPPTTPAPAQK 365
+++ V+++D PT A Q+
Sbjct: 360 KNEPAAVQQKDLPTAGASGQQ 380
>gi|356547178|ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 393
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/365 (73%), Positives = 296/365 (81%), Gaps = 24/365 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFE+PHYCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AE AL+SLSHRGPS SLAA+ILDETGVYKNLLQEIAQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61 AEAALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
GIVELAGI FTGEPAKNKKQAEKNAAMAAW++LKQLAKETASSS+EPE NDE+EQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDEVEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
ALLNYRLKEKM M S ++P+PF +F +QN RP S QPP AT+SKILPL C KTA R +
Sbjct: 181 ALLNYRLKEKMTM-SNPNAPLPFHERFQIQNPRPISSQPPPATSSKILPLICQKTAPRSK 239
Query: 241 P--ASSGANEKPAQPQPYGS-----------------EGRVVRPQKFPAAGAAPYVPIRQ 281
P A++ NE P P + E R RP KFPAAGAAPYVPIRQ
Sbjct: 240 PSLATTTTNESPGSRHPQAAVAVTSDNSNLPQQSCSLECRATRPLKFPAAGAAPYVPIRQ 299
Query: 282 YRTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAP 341
R SC+ IAPPVT+RT VP F+A PP+++P ++RAP VR+AP VT+RQAVP+YAAP
Sbjct: 300 MRPSCQRIAPPVTIRTVVPAFAA----PPASVPHPVIRAPPVRVAPPVTIRQAVPLYAAP 355
Query: 342 PVHRD 346
+D
Sbjct: 356 KQQKD 360
>gi|359806420|ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
gi|255644888|gb|ACU22944.1| unknown [Glycine max]
Length = 401
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 273/371 (73%), Positives = 310/371 (83%), Gaps = 12/371 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+SLS+R PS SLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
G VELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKETA SS+EPE NDELEQITIAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTA--SR 238
ALLNYRLKEK++M+++ ++P+PF +KF +QN RPTSPQPP A TSKILPL C K A SR
Sbjct: 181 ALLNYRLKEKISMSNS-NAPVPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKAAPRSR 239
Query: 239 HRPASSGAN---EKPAQPQPYGS-EGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVT 294
H +S A + A PQ + E R +R KFPAAGAAPYVPIRQ R C+G+APPVT
Sbjct: 240 HLVGASPARASCDNSAMPQLSATPESRGIRRPKFPAAGAAPYVPIRQMR-PCQGMAPPVT 298
Query: 295 VRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAA--PPVHRDDSLTVR 352
+RT +P FS PP +A+ Q++RAP VR+AP VT+RQAVPV+A PP+ +D+ + +
Sbjct: 299 IRTAIPVFSPPPA--AAAVSHQVLRAPHVRVAPPVTIRQAVPVFATPPPPIRKDEPVPIP 356
Query: 353 KEDPPTTPAPA 363
K++PPT AP+
Sbjct: 357 KDEPPTISAPS 367
>gi|449443363|ref|XP_004139447.1| PREDICTED: double-stranded RNA-binding protein 2-like [Cucumis
sativus]
Length = 414
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 278/398 (69%), Positives = 315/398 (79%), Gaps = 4/398 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++LS+RGP SLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61 AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
GIVELAGI FTGEPAKNKKQAEKNAAMAAW++LKQLAKE+ASSSSEPE NDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
ALLNYR KEK+AM S ++ IPF +K +Q RPTSPQ P A TSKILPL C K A R R
Sbjct: 181 ALLNYRQKEKLAM-SNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSR 239
Query: 241 PASSGANEKPA-QPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
A AN+ P Q Q EG RPQKF A A Y+P++Q+RTSC GIAPPVT+RT +
Sbjct: 240 -APFSANKIPIPQSQTPALEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAM 298
Query: 300 PCFSAPPHPPPSALPP-QMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVRKEDPPT 358
P FSAPP P PS LPP Q++R P +RIAP V++RQA+PV+AAPPV +++ V+KE+ P
Sbjct: 299 PVFSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPA 358
Query: 359 TPAPAQKVDSWTVFPPAILKDLPTVTAAAIQKEDTPTV 396
AP + + + + PTV + A ++ T TV
Sbjct: 359 PAAPKEDPPALSAPVTVTVPSPPTVVSTAEVEQATFTV 396
>gi|449523610|ref|XP_004168816.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
2-like [Cucumis sativus]
Length = 414
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/399 (68%), Positives = 315/399 (78%), Gaps = 4/399 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++LS+RGP SLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61 AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
GIVELAGI FTGEPAKNKKQAEKNAAMAAW++LKQLAKE+ASSSSEPE NDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
ALLNYR KEK+AM S ++ IPF +K +Q RPTSPQ P A TSKILPL C + S +
Sbjct: 181 ALLNYRQKEKLAM-SNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLIC-QKXSSSK 238
Query: 241 PASSGANEKPA-QPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
+S +N+ P Q Q EG RPQKF A A Y+P++Q+RTSC GIAPPVT+RT +
Sbjct: 239 QSSIFSNKIPIPQSQTPALEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAM 298
Query: 300 PCFSAPPHPPPSALPP-QMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVRKEDPPT 358
P FSAPP P PS LPP Q++R P +RIAP V++RQA+PV+AAPPV +++ V+KE+ P
Sbjct: 299 PVFSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPA 358
Query: 359 TPAPAQKVDSWTVFPPAILKDLPTVTAAAIQKEDTPTVT 397
AP + + + + PTV + A ++ T TV
Sbjct: 359 PAAPKEDPPALSAPVTVTVPSPPTVVSTAEVEQATFTVV 397
>gi|356539370|ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 277/381 (72%), Positives = 310/381 (81%), Gaps = 22/381 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+SLS+R PS SLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
G VELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKETA SS+EPE NDELEQITIAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
ALLNYRLKEK++M+++ ++P+PF +KF +QN RPTSPQPP ATTSKILPL C K A R R
Sbjct: 181 ALLNYRLKEKISMSNS-NAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSR 239
Query: 241 --------PASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPP 292
PASS + P P S G +R KFPAAGAAPYVPIRQ R C+G+APP
Sbjct: 240 HLVAASPAPASSDNSVMPQLPATPDSRG--IRRPKFPAAGAAPYVPIRQMR-PCQGMAPP 296
Query: 293 VTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAP----------P 342
VT+RT +P FS PP P +A+ Q++RAP VR+AP VT+RQAVPV+AAP P
Sbjct: 297 VTIRTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVP 356
Query: 343 VHRDDSLTVRKEDPPTTPAPA 363
+ +D+ + V K+D PT AP+
Sbjct: 357 IPKDEPVAVPKDDSPTISAPS 377
>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
Length = 436
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 256/386 (66%), Positives = 287/386 (74%), Gaps = 21/386 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++LS+RGPS SLA+RILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61 AEVALNALSNRGPSHSLASRILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
G VELAGI FTG+PAKNKKQAEKNAAMAAW+SLKQLAKET+SS EPE DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKT---AS 237
AL+NYR+KE + S+ +P+PFA+KF +QN RPTSPQP ATTS+ILP CPK +S
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNPRPTSPQPSPATTSRILPFICPKQPSRSS 240
Query: 238 RHRPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRT 297
R A+SG + A S R + P A PYVP+R R+ C G+APPVT+RT
Sbjct: 241 RSLAATSGIDRIMAAALESRSYQRPQQRFANPGTAAQPYVPMRHLRSPCHGMAPPVTIRT 300
Query: 298 TVPCFSAPP----------HPPPSALPPQMMR-APAVRIAPSVTVRQAVPVYA-APPVHR 345
VP FSAPP S P +MR AP VRIAP VT+R AVPV+A APPV
Sbjct: 301 AVPVFSAPPMPPPPCTNSTQLSSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVR- 359
Query: 346 DDSLTVRKEDPPTTPAPAQKVDSWTV 371
+RK D TT P +V V
Sbjct: 360 -----IRKVDIQTTVKPTVEVGETRV 380
>gi|18401724|ref|NP_565672.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
gi|75266001|sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; Short=AtDRB2
gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana]
gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana]
gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana]
gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
Length = 434
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 257/389 (66%), Positives = 292/389 (75%), Gaps = 15/389 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++LS+RGPS SLAARILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
G VELAGI FTG+PAKNKKQAEKNAAMAAW+SLKQLAKET+SS EPE DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
AL+NYR+KE + S+ +P+PFA+KF +QN RPTSPQP ATTS+ILP CPK SR
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240
Query: 241 PASSGANEKPAQPQPYGSEGRVV-RPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
+S A + E R RPQ+ A PYVP+RQ+R+ C G+APPVT+RT V
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFA--NPPYVPMRQFRSQCHGMAPPVTIRTAV 298
Query: 300 PCFSAPP----------HPPPSALPPQMMR-APAVRIAPSVTVRQAVPVYA-APPVHRDD 347
P FSAPP P S P +MR AP VRIAP VT+R AVPV+A APPV
Sbjct: 299 PVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVRIRT 358
Query: 348 SLTVRKEDPPTTPAPAQKVDSWTVFPPAI 376
++ E T + Q+ +S V P ++
Sbjct: 359 AVKPTVEAGETRISSVQEKESIPVLPDSL 387
>gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 464
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 277/439 (63%), Positives = 321/439 (73%), Gaps = 28/439 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFE PHYCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+SLS+RGPS SLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGH PVFT
Sbjct: 61 AEVALTSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHQPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
G VELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKE ASSSSEPE +DELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEDASSSSEPENSDELEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
ALLNYRLKEKMA+A++ +SPIPF++KFP+Q RPTSPQP ATTSKILPLFCPKT +R+R
Sbjct: 181 ALLNYRLKEKMAIANSPNSPIPFSKKFPMQGPRPTSPQPVPATTSKILPLFCPKT-TRNR 239
Query: 241 PASSGANEKPAQPQPYGSE---GRVVRPQKFPA---AGAAPYVPIRQ-----YRTSCR-- 287
P S+ ++ + S R V P++ P ++ +P + Y T R
Sbjct: 240 PTSTTITDRSVPTRTATSTTSCDRTVPPRQSPTLDFGSSSSEIPAAEQLLCPYPTIGRMP 299
Query: 288 GIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAA-PPVHRD 346
PV VR+ VP F+AP PPS LPPQ++R + P VT+RQ VYAA PPV ++
Sbjct: 300 WHGSPVRVRSVVPVFAAPQCQPPS-LPPQVLRG-LPQQPPPVTIRQTSLVYAASPPVQKE 357
Query: 347 DSLTVRKED--PPTTPAPAQKVDSWTVFPPAILKDLPTVTA--AAIQKEDT---PTVTPA 399
D L V+K + P +PA + + P ++D PTV +A+QK D+ T PA
Sbjct: 358 DPLNVQKGNVVVPKEDSPASQKE----HPDIGIEDSPTVKKEHSAVQKADSQAGQTDNPA 413
Query: 400 IQKQDCLTVASPVVQKENP 418
++ +D L ENP
Sbjct: 414 VEVEDPLCNTKEDQAAENP 432
>gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/248 (83%), Positives = 222/248 (89%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP+YC+TLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+SLS+RGPS SLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
G VELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKE A+SSSE E NDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAANSSSETENNDELEQITIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
ALLNYRLKEKMA+A++ + F +KFP+QN+R SPQ P TSKILPL C KT R+R
Sbjct: 181 ALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSPQLPPVATSKILPLICQKTPPRNR 240
Query: 241 PASSGANE 248
P S AN+
Sbjct: 241 PPSPTAND 248
>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|75261835|sp|Q9AV50.1|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
Full=dsRNA-binding protein 6
gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 231/343 (67%), Positives = 270/343 (78%), Gaps = 7/343 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA VNFNGE FESP + +TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAGI FTG+PAKNKKQAEKNAA AAW+SL+QL ++ ASSS+EPE+NDE EQI IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTS-PQPPLATTSKILPLFCPKTASRH 239
ALLNYRLKEKMAMA+ + PF +KFP+Q R T+ PQ ++ SKILPLF PK+ SR
Sbjct: 181 ALLNYRLKEKMAMANNPHA-SPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRS 239
Query: 240 RPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
RP S A++ +Q +E R +FPAA AAPYVP+ +R C +APPVTVRT++
Sbjct: 240 RPESPAASDAASQTPFRPTESPNPR-SRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSI 298
Query: 300 PCFSAPPHPPPSA----LPPQMMRAPAVRIAPSVTVRQAVPVY 338
P FSAPP PPP A LPP M P +R+A V +R A P++
Sbjct: 299 PVFSAPPLPPPGARTQQLPPLMSHPPPIRMASPVRIRPAPPLF 341
>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
Length = 512
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/346 (65%), Positives = 265/346 (76%), Gaps = 7/346 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA VNFNGE FESP + +TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAGI FTG+PAKNKKQAEKNAA AAW++LKQL +E +SS+EPE NDE EQI IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSALKQLVREEVNSSNEPENNDEQEQIRIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTR-PTSPQPPLATTSKILPLFCPKTASRH 239
ALLNYRLKEKMAMA+ PF +KFP+Q R P+ Q ++ SKILPLF PK+ SR
Sbjct: 181 ALLNYRLKEKMAMAN-YPHVSPFPKKFPMQPERKPSFGQSSQSSYSKILPLFRPKSNSRS 239
Query: 240 RPASSGANEKPAQPQPYGSEGRVVRPQ-KFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTT 298
RP S + + +Q + P+ +FPAA AAPYVP+ YR C +AP VT+RT
Sbjct: 240 RPESPASTDGVSQIPSRAMDSLTPSPRSRFPAAEAAPYVPVGHYRMPCHSMAPSVTIRTA 299
Query: 299 VPCFSAPPHPPPSA----LPPQMMRAPAVRIAPSVTVRQAVPVYAA 340
VP FSAPP P PSA LPP M P +R+A V +R + P++A+
Sbjct: 300 VPVFSAPPLPSPSARPQQLPPLMSHPPPIRMASPVRMRPSSPMFAS 345
>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 229/344 (66%), Positives = 264/344 (76%), Gaps = 7/344 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA V FNGE FESP + +TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVIFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAGI FTG+ AKNKKQAEKNAA AAW+SLKQLA+E A+S++EPE NDE EQI IAR
Sbjct: 121 CTVELAGITFTGDHAKNKKQAEKNAASAAWSSLKQLAREEANSTNEPENNDEQEQIRIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTR-PTSPQPPLATTSKILPLFCPKTASRH 239
ALLNYRLKEKMAMA+ + PF +KFP+Q R P Q ++ SKILPLF PK++SR
Sbjct: 181 ALLNYRLKEKMAMANNPHA-SPFPKKFPMQPERKPCFGQSSQSSYSKILPLFRPKSSSRS 239
Query: 240 RPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
R S A A P P+ +FPAA AAPYVP+ Y SC +APPVTVR+++
Sbjct: 240 R-PESPATADGASPSPFWPIESSNSRSRFPAAEAAPYVPVGHYHMSCHSMAPPVTVRSSI 298
Query: 300 PCFSAPPHPPPSA----LPPQMMRAPAVRIAPSVTVRQAVPVYA 339
P FSAPP PPPS LPP + P+VR+A V +R A P +A
Sbjct: 299 PVFSAPPLPPPSGRTQQLPPLLSNPPSVRMASPVRIRPASPHFA 342
>gi|357146672|ref|XP_003574072.1| PREDICTED: double-stranded RNA-binding protein 6-like [Brachypodium
distachyon]
Length = 502
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/313 (69%), Positives = 252/313 (80%), Gaps = 3/313 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA+V FNGE+FESP + +TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKASVTFNGELFESPGFFTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAGI FTG+ AKNKKQAEKNAA AAW SLKQLA+E A+S++EPE NDE EQI IAR
Sbjct: 121 CTVELAGIIFTGDHAKNKKQAEKNAASAAWASLKQLAREEANSTNEPENNDEQEQIRIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTR-PTSPQPPLATTSKILPLFCPKTASRH 239
ALLNYRLKEKMAMA+ + PF +KFP++ R P+ Q ++ SKILPLF PK++SR
Sbjct: 181 ALLNYRLKEKMAMANNPHAS-PFPKKFPMKPERKPSFAQSSQSSYSKILPLFRPKSSSRS 239
Query: 240 RPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
RP S A + +Q P+ S +FPAAGAAPYVP+ YR C +APPVTVR+ V
Sbjct: 240 RPESPAATDGASQ-SPFWSIETSNSRSRFPAAGAAPYVPVGHYRMPCHSMAPPVTVRSAV 298
Query: 300 PCFSAPPHPPPSA 312
P FSAPP PPP +
Sbjct: 299 PVFSAPPLPPPGS 311
>gi|226494720|ref|NP_001142144.1| hypothetical protein [Zea mays]
gi|194707342|gb|ACF87755.1| unknown [Zea mays]
gi|414871035|tpg|DAA49592.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 515
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 249/441 (56%), Positives = 297/441 (67%), Gaps = 42/441 (9%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTC+REGPDHAPRFKA VNFNGE FESP + STLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSG+GHLPVFT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGVGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAGI FTG+ AKNKKQAEKNAA AAW++LKQL +E +SS+E E +DE EQI IAR
Sbjct: 121 CTVELAGITFTGDHAKNKKQAEKNAASAAWSALKQLVREEVNSSNETENSDEQEQIRIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTR-PTSPQPPLATTSKILPLFCPKTASRH 239
ALLNYRLKEKMAMA+ PF +KFP+Q R P+ Q ++ SKILPLF PK+ SR
Sbjct: 181 ALLNYRLKEKMAMAN-YPHVSPFPKKFPMQPERKPSFGQSSQSSYSKILPLFRPKSNSRS 239
Query: 240 RPASSGANEKPAQPQPYGSEGRVVRPQ-KFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTT 298
RP S + + +Q + P+ +FPAA AAPYVP+ +R C +AP VT+RT
Sbjct: 240 RPESPASTDGASQMPGRAMDIHTPSPRSRFPAAEAAPYVPVGHFRMPCHSMAPSVTIRTA 299
Query: 299 VPCFSAPPHPPPSA----LPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVRKE 354
VP FSAPP PPPSA LPP M P +R+A V +R A P++A
Sbjct: 300 VPVFSAPPLPPPSARPQQLPPLMSHPPPIRMASPVRMRPASPMFA--------------- 344
Query: 355 DPPTTPAPAQKVDSWTVFPPAILKDLPTVTAAAIQKEDTPTVTPA----IQKQDCLTVAS 410
+ APAQ + P LKD+ +KE P+V P +Q Q + S
Sbjct: 345 ----SSAPAQ---GPKLVRPVQLKDVQDQP----RKETAPSVIPVQVKDVQYQSRKSSMS 393
Query: 411 PVVQKENPPIVVASAVQKGYP 431
PV+ P+VV A ++ P
Sbjct: 394 PVI-----PVVVKDAQRQPLP 409
>gi|308081633|ref|NP_001183890.1| uncharacterized protein LOC100502483 [Zea mays]
gi|238015288|gb|ACR38679.1| unknown [Zea mays]
Length = 520
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 229/356 (64%), Positives = 261/356 (73%), Gaps = 25/356 (7%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTC+REGPDHAPRFKA VNFNGE FESP + +TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAGI F G+PAKNKKQAEKNAA AAW++LKQL +E +SS+EPE DE EQI IAR
Sbjct: 121 CTVELAGITFAGDPAKNKKQAEKNAASAAWSALKQLVREEVNSSNEPENIDEQEQIRIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTR-PTSPQPPLATTSKILPLFCPKTASRH 239
ALLNYRLKEKMAMA+ PF +KFP+Q R P Q ++ SKILPLF PK SR
Sbjct: 181 ALLNYRLKEKMAMAN-YPHVSPFPKKFPMQQERKPCLGQSCQSSHSKILPLFRPKPNSRP 239
Query: 240 R-PASSGANEKPAQPQPYGSEGRVVRP-------QKFPAAGAAPYVPIRQY-RTSCRGIA 290
+ PAS+ K + GR V +FPAA AAPYVP+ Y R C +A
Sbjct: 240 KSPASTDGVSK--------TPGRTVESLVDQSPRSRFPAAEAAPYVPVGHYRRIPCHNMA 291
Query: 291 PPVTVRTTVPCFSAPPHPPPSA----LPPQMMRAPAVRIAPSVTVR--QAVPVYAA 340
P VT+RT VP FSAPP PPP A LPP M P +R+A V +R A P++A+
Sbjct: 292 PSVTIRTAVPVFSAPPLPPPPARLQQLPPLMSHPPPIRMASPVRMRPAPASPMFAS 347
>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
Length = 506
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/263 (62%), Positives = 196/263 (74%), Gaps = 7/263 (2%)
Query: 81 ILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQ 140
+LDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT VELAGI FTG+PAKNKKQ
Sbjct: 73 LLDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQ 132
Query: 141 AEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIARALLNYRLKEKMAMASTLDSP 200
AEKNAA AAW+SL+QL ++ ASSS+EPE+NDE EQI IARALLNYRLKEKMAMA+ +
Sbjct: 133 AEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIARALLNYRLKEKMAMANNPHA- 191
Query: 201 IPFARKFPVQNTRPTS-PQPPLATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSE 259
PF +KFP+Q R T+ PQ ++ SKILPLF PK+ SR RP S A++ +Q +E
Sbjct: 192 SPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSRPESPAASDAASQTPFRPTE 251
Query: 260 GRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSAPPHPPPSA----LPP 315
R +FPAA AAPYVP+ +R C +APPVTVRT++P FSAPP PPP A LPP
Sbjct: 252 SPNPR-SRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSIPVFSAPPLPPPGARTQQLPP 310
Query: 316 QMMRAPAVRIAPSVTVRQAVPVY 338
M P +R+A V +R A P++
Sbjct: 311 LMSHPPPIRMASPVRIRPAPPLF 333
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YKN LQE+AQR LPSYT R G H P F TV G F +QAE +A
Sbjct: 79 VYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKNA 137
Query: 61 AEVALSSL 68
A A SSL
Sbjct: 138 ASAAWSSL 145
>gi|356514617|ref|XP_003526002.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 265
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/163 (82%), Positives = 145/163 (88%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY IREGP+HAPRFKAT+ FNGEIFE+PHYCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEV L+SLSHRGPS SLA +ILDETGVYKNL+QEIAQRVGAPLP Y T RSGLGHLP+F
Sbjct: 61 AEVPLNSLSHRGPSHSLATKILDETGVYKNLVQEIAQRVGAPLPHYITYRSGLGHLPIFI 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASS 163
IVEL GI FTGEPAKNKKQAEKNAAMAAW++LK+ +SS
Sbjct: 121 RIVELTGITFTGEPAKNKKQAEKNAAMAAWSALKRYFGMVSSS 163
>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/198 (69%), Positives = 160/198 (80%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGP+ SL AR+LDETG+YKNLLQE A R G LP YTT+RSG GH+PVFT
Sbjct: 61 AEVALNVLSLRGPARSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG+ FTGEPAK KKQAEKNAA+AAW++LK+ + SS E +T +E +Q +AR
Sbjct: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRFPNLDSLSSKEVDTREEQDQAVVAR 180
Query: 181 ALLNYRLKEKMAMASTLD 198
L N+R K++ A D
Sbjct: 181 VLSNFRSKDEGRYARKRD 198
>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 683
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 139/202 (68%), Positives = 163/202 (80%), Gaps = 2/202 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLP+Y CIREGPDHAPRFKATVNFNGE+FESP+YC+TLRQAEH+A
Sbjct: 65 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 124
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++LS RGPS SLAARILDETGV KNLLQE AQR G LP Y T RSG GHLPVFT
Sbjct: 125 AEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPVFT 184
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASS--SSEPETNDELEQITI 178
VE+A ++F+GE AK KKQAEKNAAMAAW++++QLA + ++E E ++E EQ TI
Sbjct: 185 CTVEVANMSFSGEAAKTKKQAEKNAAMAAWSAIQQLANQGRGVPLATEGEVSEEQEQNTI 244
Query: 179 ARALLNYRLKEKMAMASTLDSP 200
ARAL + KE + + +P
Sbjct: 245 ARALAQHYGKESQQLPHSTQNP 266
>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 477
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 132/191 (69%), Positives = 158/191 (82%), Gaps = 1/191 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KNQLQELAQRSCFNLPSY C+REGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SL AR+LDETG+YKNLLQE A R G LP YTTIRSG GH+P FT
Sbjct: 64 AEVALNVLSSRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTIRSGPGHVPTFT 123
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL-AKETASSSSEPETNDELEQITIA 179
VELAG+ FTGEPAK KKQAEKNAA+AAW++LK++ + + ++ E+ +E +Q +A
Sbjct: 124 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPSLDYLTNKEVVESREEQDQAVVA 183
Query: 180 RALLNYRLKEK 190
R L N+R K++
Sbjct: 184 RVLSNFRSKDE 194
>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 577
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 140/202 (69%), Positives = 163/202 (80%), Gaps = 2/202 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSC NLP+Y CIREGPDHAPRFKATV+FNGEIFESP+YC+TLRQAEH+A
Sbjct: 19 MYKNQLQELAQRSCINLPAYACIREGPDHAPRFKATVSFNGEIFESPNYCNTLRQAEHAA 78
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++LS RGPS SLAARILDETGV KNLLQE AQR G LP Y+T RSG GHLPVFT
Sbjct: 79 AEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYSTTRSGPGHLPVFT 138
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS--SEPETNDELEQITI 178
VELA + F+GE AK KKQAEKNAAMAAW++LKQ A + S S ++ E ++E EQ TI
Sbjct: 139 CTVELAKMTFSGEAAKTKKQAEKNAAMAAWSALKQFANQGRSVSLATDAEVSEEQEQNTI 198
Query: 179 ARALLNYRLKEKMAMASTLDSP 200
A+AL + KE + ++ +P
Sbjct: 199 AKALAQHFGKEAQQLPQSVQNP 220
>gi|357134637|ref|XP_003568923.1| PREDICTED: double-stranded RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 559
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/184 (73%), Positives = 151/184 (82%), Gaps = 2/184 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGESFESPTFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SLAA++LDETG+YKNLLQE A R G LP+YTTIRSG GH P+FT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPEYTTIRSGPGHTPMFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK--ETASSSSEPETNDELEQITI 178
VELAG FTG P K KKQA+KNAAMAAW+ LKQL + E ASSS ++E EQ+ +
Sbjct: 121 CTVELAGRIFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEAASSSPLDHDDEEQEQVIV 180
Query: 179 ARAL 182
AR L
Sbjct: 181 ARTL 184
>gi|387538565|gb|AFJ79551.1| double stranded RNA binding protein 3 [Oryza sativa Indica Group]
Length = 593
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/185 (74%), Positives = 152/185 (82%), Gaps = 3/185 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE FESP +CSTLR AEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SLAA++LDETG+YKNLLQE A R G LP YTTIRSG GH PVFT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK--ETASSSSEPE-TNDELEQIT 177
VELAG+ FTG P K KKQA+KNAAMAAW+ LKQL + E +SSS P+ +D+ EQI
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180
Query: 178 IARAL 182
+AR L
Sbjct: 181 VARTL 185
>gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/190 (70%), Positives = 154/190 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SL AR+LDETGVYKNLLQE A R G LP YTT+RSG GH+PVFT
Sbjct: 61 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG+ FTGE AK KKQAEKNAA+AAW++LK++ + S E EQ+ +AR
Sbjct: 121 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESREEQVVVAR 180
Query: 181 ALLNYRLKEK 190
L N+R K++
Sbjct: 181 VLSNFRSKDE 190
>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
Length = 606
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/185 (74%), Positives = 152/185 (82%), Gaps = 3/185 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE FESP +CSTLR AEH+A
Sbjct: 14 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 73
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SLAA++LDETG+YKNLLQE A R G LP YTTIRSG GH PVFT
Sbjct: 74 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 133
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK--ETASSSSEPE-TNDELEQIT 177
VELAG+ FTG P K KKQA+KNAAMAAW+ LKQL + E +SSS P+ +D+ EQI
Sbjct: 134 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 193
Query: 178 IARAL 182
+AR L
Sbjct: 194 VARTL 198
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 86 GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNA 145
G+YKN LQE+AQR LP Y IR G H P F V G F + + ++A
Sbjct: 13 GMYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHA 72
Query: 146 AMAAWTSLKQLAKETASSSSEPETNDELEQITIARALLN---YRLKEKMAMASTLDS 199
AA +L +L+K SSS + DE I + LL +R K+ + +T+ S
Sbjct: 73 --AAEVALNELSKRGPSSSLAAKVLDE---TGIYKNLLQETAHRAGLKLPVYTTIRS 124
>gi|359488565|ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/190 (70%), Positives = 154/190 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SL AR+LDETGVYKNLLQE A R G LP YTT+RSG GH+PVFT
Sbjct: 64 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 123
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG+ FTGE AK KKQAEKNAA+AAW++LK++ + S E EQ+ +AR
Sbjct: 124 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESREEQVVVAR 183
Query: 181 ALLNYRLKEK 190
L N+R K++
Sbjct: 184 VLSNFRSKDE 193
>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
gi|122169532|sp|Q0DKP4.1|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; AltName:
Full=dsRNA-binding protein 3; Short=OsDRB3
gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
Length = 593
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 137/185 (74%), Positives = 152/185 (82%), Gaps = 3/185 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE FESP +CSTLR AEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SLAA++LDETG+YKNLLQE A R G LP YTTIRSG GH PVFT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK--ETASSSSEPE-TNDELEQIT 177
VELAG+ FTG P K KKQA+KNAAMAAW+ LKQL + E +SSS P+ +D+ EQI
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180
Query: 178 IARAL 182
+AR L
Sbjct: 181 VARTL 185
>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/190 (70%), Positives = 154/190 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 72 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 131
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SL AR+LDETGVYKNLLQE A R G LP YTT+RSG GH+PVFT
Sbjct: 132 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 191
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG+ FTGE AK KKQAEKNAA+AAW++LK++ + S E EQ+ +AR
Sbjct: 192 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESREEQVVVAR 251
Query: 181 ALLNYRLKEK 190
L N+R K++
Sbjct: 252 VLSNFRSKDE 261
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG-EPAKNKKQAE 142
E ++KN LQE+AQR LP Y IR G H P F V G F +QAE
Sbjct: 69 EVDMFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAE 128
Query: 143 KNAAMAAWTSLKQLA---KETASSSSEPETNDELEQITIARALLN 184
AA A L TA E L Q T RA LN
Sbjct: 129 HAAAEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLN 173
>gi|359487919|ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 133/186 (71%), Positives = 155/186 (83%), Gaps = 9/186 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L++RGPS +LAAR+LDETGVYKNLLQE A R G LP YTTIRSG GH+PVF+
Sbjct: 61 AEVALNTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VE+AG++FTGE AK KKQA+KNAAM AW++L++L E E N+E EQ+ IAR
Sbjct: 121 CTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKL---------ESECNEEQEQVIIAR 171
Query: 181 ALLNYR 186
L + R
Sbjct: 172 VLASLR 177
>gi|226498844|ref|NP_001146621.1| uncharacterized protein LOC100280218 [Zea mays]
gi|219888055|gb|ACL54402.1| unknown [Zea mays]
gi|224029829|gb|ACN33990.1| unknown [Zea mays]
gi|413917729|gb|AFW57661.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
gi|413917730|gb|AFW57662.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 289
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 140/219 (63%), Positives = 165/219 (75%), Gaps = 11/219 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKATVNFNGE+FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS +LAA++LDETG+YKNLLQE A R G LP YTTIRSG GH PVF
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFA 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK--ETASSSSEPETNDEL-EQIT 177
VELAG AFTG P K KKQA+KNAAMAAW+ LK+L + E +SSS P+ +DE+ EQ+
Sbjct: 121 CTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKKLPRVGEPSSSSCPPDQDDEVQEQVV 180
Query: 178 IARALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTS 216
+ R L ++ +P ++ N RP+S
Sbjct: 181 VTRTL--------ASLNQANSGKVPHQKEKQQSNNRPSS 211
>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/188 (71%), Positives = 160/188 (85%), Gaps = 2/188 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L++RGPS +LAAR+LDETGVYKNLLQE A R G LP YTTIRSG GH+PVF+
Sbjct: 61 AEVALNTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKE--TASSSSEPETNDELEQITI 178
VE+AG++FTGE AK KKQA+KNAAM AW++L++L++ +S S E E N+E EQ+ I
Sbjct: 121 CTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKLSQRGSPSSPSVESECNEEQEQVII 180
Query: 179 ARALLNYR 186
AR L + R
Sbjct: 181 ARVLASLR 188
>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
Length = 573
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/185 (72%), Positives = 152/185 (82%), Gaps = 3/185 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKATVNFNGE+FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS +LAA++LDETG+YKNLLQE A R G LP YTTIRSG GH PVFT
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK--ETASSSSEPETND-ELEQIT 177
VELAG FTG P K KKQA+KNAAMAAW+ LKQL + E +SSS + +D E EQ+
Sbjct: 121 CTVELAGKTFTGNPGKTKKQAQKNAAMAAWSDLKQLPRIGEPSSSSCPADQDDEEQEQVI 180
Query: 178 IARAL 182
+ R L
Sbjct: 181 VTRTL 185
>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/194 (70%), Positives = 152/194 (78%), Gaps = 4/194 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KNQLQELAQRSCFNLPSY CIREGPDHAPRFKATV FNGE FESP + STLRQAEH+A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SLAA++LDETG+YKNLLQE A R G LP YTTIRSG GH P FT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPMYTTIRSGPGHTPTFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL----AKETASSSSEPETNDELEQI 176
VELAG FTG P K KKQA+KNAAMAAW+ LKQL E ASSSS + ++E EQ
Sbjct: 121 CTVELAGRIFTGSPGKTKKQAQKNAAMAAWSELKQLPLVGEGEAASSSSPSDHDEEKEQA 180
Query: 177 TIARALLNYRLKEK 190
T+AR+L N K +
Sbjct: 181 TVARSLENLNQKNE 194
>gi|225432380|ref|XP_002276654.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 563
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/185 (72%), Positives = 159/185 (85%), Gaps = 3/185 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE+FESP +C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS GPS +LAA++LDETGVYKNLLQE A R G LP YTT+RSG GH+PVF
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFF 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEP---ETNDELEQIT 177
V++A ++FTGEPAK KKQA+KNAAMAAW++LK+L++ ++S+SS P NDELEQ+T
Sbjct: 121 CTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALKRLSQASSSTSSAPLESGGNDELEQVT 180
Query: 178 IARAL 182
+AR L
Sbjct: 181 VARYL 185
>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/185 (72%), Positives = 159/185 (85%), Gaps = 3/185 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE+FESP +C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS GPS +LAA++LDETGVYKNLLQE A R G LP YTT+RSG GH+PVF
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFF 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEP---ETNDELEQIT 177
V++A ++FTGEPAK KKQA+KNAAMAAW++LK+L++ ++S+SS P NDELEQ+T
Sbjct: 121 CTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALKRLSQASSSTSSAPLESGGNDELEQVT 180
Query: 178 IARAL 182
+AR L
Sbjct: 181 VARYL 185
>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 356
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/189 (70%), Positives = 152/189 (80%), Gaps = 6/189 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTC REGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVALS+LS +GPS SL AR+LDETG+YKNLLQE A R G LP YT++RSG GH+P F+
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG++F GE AK KKQAEKNAA+AAW SL+++ S +P +E EQ +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMP------SLDPLRGEEKEQEVVAR 174
Query: 181 ALLNYRLKE 189
L +R KE
Sbjct: 175 VLSRFRPKE 183
>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
Length = 568
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 148/246 (60%), Positives = 180/246 (73%), Gaps = 11/246 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS +LAAR+LDETGVYKNLLQE A R G LP YTT+RSG GH+PVF+
Sbjct: 61 AEVALNTLASRGPSRALAARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEP--------ETNDE 172
VELAG++FTGEPA+ KKQA+KNAAMAAW++LK+L + +SSSS + ++E
Sbjct: 121 CTVELAGMSFTGEPARTKKQAQKNAAMAAWSALKRLVQHGSSSSSSLSSSLVENRKGSEE 180
Query: 173 LEQITIARALLNYRLKEKMAMASTLDSPIPFARKFPVQN--TRPTSPQPPLATTSKILPL 230
EQ+ IAR L + + E + + D R PV T PT P+ + + P
Sbjct: 181 QEQVVIARFLASVQPSE-LKINKQNDCQTGHERFIPVCKDLTPPTPSLYPMQSQNWAYPS 239
Query: 231 FCPKTA 236
F P+ A
Sbjct: 240 FSPEIA 245
>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
Length = 394
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 151/189 (79%), Gaps = 7/189 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEV+L+ LS R PS SL A+ILDETG+YKNLLQE A R G LP YT++RSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG++FTGE AK KKQAEKNAA+AAW+SLK++ SS ++E EQ +AR
Sbjct: 121 CTVELAGMSFTGESAKTKKQAEKNAAIAAWSSLKRM-------SSLDSQDEEKEQEAVAR 173
Query: 181 ALLNYRLKE 189
L ++ KE
Sbjct: 174 VLSRFKPKE 182
>gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|145322916|ref|NP_001030779.2| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|75273549|sp|Q9LJF5.1|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3; Short=AtDRB3
gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
Length = 359
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 152/189 (80%), Gaps = 6/189 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVALS+LS +GPS SL AR+LDETG+YKNLLQE A R G LP YT++RSG GH+P F+
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG++F GE AK KKQAEKNAA+AAW SL+++ + +P +E EQ +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 174
Query: 181 ALLNYRLKE 189
L +R KE
Sbjct: 175 VLSRFRPKE 183
>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
acuminata]
Length = 610
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/207 (63%), Positives = 153/207 (73%), Gaps = 17/207 (8%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY IREGPDHAPRFKATVNFNGE FESP +CSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++LS RGPS SLAA++LDETG+YKNLLQE A R G LP YTT+RSG GH P+FT
Sbjct: 61 AEVALNTLSKRGPSRSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTVRSGPGHTPIFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSS--------------- 165
VELAG++FTG+PAK KKQA+KNAAMAAW++LK ++
Sbjct: 121 CTVELAGMSFTGDPAKTKKQAQKNAAMAAWSALKHFKSYLVDGANAAPRLGSSSSPSAPS 180
Query: 166 --EPETNDELEQITIARALLNYRLKEK 190
E E N+E E + +A AL + E+
Sbjct: 181 LSESEKNEEQEPVILAHALAKLQRSEE 207
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 290 APPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVHR 345
A PVT+RTT+P SA A+ P + + +AP V VR VPV +APPV +
Sbjct: 533 AAPVTIRTTIPVCSARA----GAVNPGTLVSSTSFVAPPVNVRSVVPVCSAPPVRK 584
>gi|356504084|ref|XP_003520829.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 539
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 129/188 (68%), Positives = 156/188 (82%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS +LAAR+LDETGVYKNLLQE A R G LP YTTIRSG GH P F+
Sbjct: 61 AEVALNTLAKRGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL------AKETASSSSEPETNDELE 174
VE+AG+ FTG+P++ KKQA+KNAAMAAW++L++L + ++S S E + N+E E
Sbjct: 121 CTVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALRKLSEHHLSSSTSSSFSLESKGNEEQE 180
Query: 175 QITIARAL 182
Q+ IAR L
Sbjct: 181 QVIIARVL 188
>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
Length = 384
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 122/161 (75%), Positives = 137/161 (85%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEV+L+ LS R PS SL A+ILDETG+YKNLLQE A R G LP YT++RSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETA 161
VELAG+ FTGE AK KKQAEKNAA+AAW+SLK+ ++ A
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKKKEQEA 161
>gi|413917728|gb|AFW57660.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 170
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 123/155 (79%), Positives = 135/155 (87%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKATVNFNGE+FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS +LAA++LDETG+YKNLLQE A R G LP YTTIRSG GH PVF
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFA 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VELAG AFTG P K KKQA+KNAAMAAW+ LK+
Sbjct: 121 CTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKK 155
>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
Length = 386
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 140/194 (72%), Positives = 158/194 (81%), Gaps = 4/194 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLP+Y+CIREGPDHAPRFKA VNFNGE+FESP+YCSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKAAVNFNGEVFESPNYCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AE+AL+ LS RGPS SLAARILDETGV+KNLLQE AQR PLP YTT RSG GHLPVFT
Sbjct: 61 AELALNVLSRRGPSQSLAARILDETGVFKNLLQETAQRANVPLPTYTTTRSGPGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETA--SSSSEPETNDELEQITI 178
+VE+AG+ FTG+ K KKQAEKNAAMAAW +LKQ AK+ A S E ++ EQI+I
Sbjct: 121 CVVEVAGMNFTGDAGKTKKQAEKNAAMAAWATLKQFAKKLAPPSLFYSDEMTEDQEQISI 180
Query: 179 ARALLNYRLKEKMA 192
AR L Y EK+
Sbjct: 181 ARVL--YLAYEKVG 192
>gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsis thaliana]
gi|75244423|sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 5; Short=AtDRB5
gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
Length = 393
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 195/341 (57%), Gaps = 49/341 (14%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEV+L+ LS R PS SL A+ILDETG+YKNLLQE A R G LP YT++RSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG+ FTGE AK KKQAEKNAA+AAW+SLK++ SS ++E EQ +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 173
Query: 181 ALLNYR--------------------------LKEKMAMASTLDSPIPFARKFPVQNTRP 214
L ++ L E++ + L + + N
Sbjct: 174 VLSRFKPKEVRRRETTNQWRRRTSQQDSNKDLLIERLRWINLLTNQASSSSSTSTPNQHK 233
Query: 215 TSPQPPL------ATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSEGRVVR---- 264
S L +SKILP +++ SS + + S+ +V
Sbjct: 234 NSSFISLIPPPPPPKSSKILPFI-----QQYKDRSSQEAKTETATEMINSKAKVNETSTR 288
Query: 265 -PQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSA 304
++ P + Y + + +AP V +R+ +P F+A
Sbjct: 289 LSKQMPFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAA 329
>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
Length = 675
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/195 (70%), Positives = 159/195 (81%), Gaps = 2/195 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KNQLQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE+FESP Y STLR AEH+A
Sbjct: 4 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++LS RGP SLAARILDETGVYKNLLQE AQR G PLP YTT+RSG GHLPVFT
Sbjct: 64 AEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFT 123
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSS--EPETNDELEQITI 178
V + G+ FTGE AK KKQAEKNAAM AW+SLKQ AK+ +S++ E E +E EQ +
Sbjct: 124 CTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQYAKQGGTSATLLESEVTEEQEQNFV 183
Query: 179 ARALLNYRLKEKMAM 193
ARAL K++ ++
Sbjct: 184 ARALARAHGKDERSV 198
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 86 GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF 130
G++KN LQE+AQR LP Y+ IR G H P F V G F
Sbjct: 3 GMFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVF 47
>gi|356571155|ref|XP_003553745.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 538
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 127/188 (67%), Positives = 155/188 (82%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++++ RGPS +LAAR+LDETGVYKNLLQE A R G LP YTTIRSG GH P F+
Sbjct: 61 AEVALNTIAKRGPSGALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL------AKETASSSSEPETNDELE 174
VE+AG+ FTG+P++ KKQA+KNAAMAAW++L++L + ++S S E + N+E E
Sbjct: 121 CSVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALRKLSEHHLSSSTSSSFSRESKANEEQE 180
Query: 175 QITIARAL 182
Q+ IA L
Sbjct: 181 QVIIAGVL 188
>gi|226507212|ref|NP_001141877.1| hypothetical protein [Zea mays]
gi|194706274|gb|ACF87221.1| unknown [Zea mays]
gi|414589932|tpg|DAA40503.1| TPA: hypothetical protein ZEAMMB73_809711 [Zea mays]
Length = 392
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 122/184 (66%), Positives = 145/184 (78%), Gaps = 5/184 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRF+A V FNGE FE P C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS +LAAR+LDETGVYKNLLQE A R G LP YTT+RSG GH PVF+
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG++F G+PA+ KKQAEKNAAMAAW+SLKQ ++SS++ + + +R
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ-----STSSAQSRKHKPCAYLYASR 175
Query: 181 ALLN 184
++N
Sbjct: 176 GIIN 179
>gi|322518582|sp|B7E321.1|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
Full=dsRNA-binding protein 5
gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 404
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/155 (76%), Positives = 131/155 (84%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKATV FNGE F+ P C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SL AR+LDETGVYKNLLQE A R G LP YTT+RSG GH PVF+
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VELAG++F G+PAK KK AEKNAAMAAW+SLKQ
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
>gi|388495920|gb|AFK36026.1| unknown [Lotus japonicus]
Length = 170
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 116/155 (74%), Positives = 138/155 (89%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++ + RGPS +LAAR+LDETGVYKNLLQE A R G LP YTTIRSG GH+P ++
Sbjct: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE+AG+ FTG+PA+ KKQA+KNAAMAAW++L++
Sbjct: 121 CTVEIAGMHFTGDPARTKKQAQKNAAMAAWSALRK 155
>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 1053
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/182 (68%), Positives = 137/182 (75%), Gaps = 27/182 (14%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLP+Y CIREGPDHAPRFKATVNFNGE+FESP+YC+TLRQAEH+A
Sbjct: 230 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 289
Query: 61 AEVALSSLSHRGPSPSLAARIL---------------------------DETGVYKNLLQ 93
AEVAL++LS RGPS SLAARIL DETGV KNLLQ
Sbjct: 290 AEVALNTLSRRGPSQSLAARILVSGAVIGAGCGGMNGGMGWEEQGMRVWDETGVCKNLLQ 349
Query: 94 EIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
E AQR G LP Y T RSG GHLPVFT VE+A + F+GE AK KKQAEKNAAMAAW++L
Sbjct: 350 ETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAEKNAAMAAWSAL 409
Query: 154 KQ 155
KQ
Sbjct: 410 KQ 411
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 30 APRFKATV-NFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSLAARILDETGVY 88
APR + + G ES + + R+ E A + G S +L G+Y
Sbjct: 172 APRCRVSAPEIGGWWSESRAFWRSGRRFELRGLGGAREEVERGGSSRALWCGERVVAGMY 231
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF 130
KN LQE+AQR LP Y IR G H P F V G F
Sbjct: 232 KNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVF 273
>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
Length = 159
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/158 (75%), Positives = 137/158 (86%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFK+TVNFNGE FESP + STLR AEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS +L A +LDETGVYKNLLQE A R G LP YTTIRSG GH+PVF+
Sbjct: 61 AEVALNTLASRGPSKALIAGVLDETGVYKNLLQETAHRAGLKLPVYTTIRSGPGHVPVFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
VELAG++FTGE A+ KKQA+KNAAMAAW++LK+ K
Sbjct: 121 CNVELAGMSFTGESARTKKQAQKNAAMAAWSALKRFCK 158
>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
Length = 325
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/156 (76%), Positives = 132/156 (84%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKATV FNGE F+ P C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SL AR+LDETGVYKNLLQE A R G LP YTT+RSG GH PVF+
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156
VELAG++F G+PAK KK AEKNAAMAAW+SLKQ+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQM 156
>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
Length = 357
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/156 (75%), Positives = 131/156 (83%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKATV FNGE F+ P C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS S AR+LDETGVYKNLLQE A R G LP YTT+RSG GH PVF+
Sbjct: 61 AEVALARLSLRGPSSSFTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156
VELAG++F G+PAK KK AEKNAAMAAW+SLKQ+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQM 156
>gi|357512161|ref|XP_003626369.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355501384|gb|AES82587.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 505
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/157 (73%), Positives = 138/157 (87%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFK TVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS +LAAR+LDETGVYKNLLQE A R G LP Y TIR+G GH+P F
Sbjct: 61 AEVALNTLATRGPSRTLAARVLDETGVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNFY 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157
VE+AG+ FTG+PA+ KKQA+KNAA+AAW++L++L+
Sbjct: 121 CTVEIAGMHFTGDPARTKKQAQKNAAIAAWSALRKLS 157
>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 364
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/182 (66%), Positives = 137/182 (75%), Gaps = 1/182 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKATV FNGE F P C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS L AR+LDETGVYKNLLQE A R G LP YTT+RSG GH PVF
Sbjct: 61 AEVALARLSTRGPSTYLTARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFA 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG++F G+ A+ KKQAEKNAAM AW++LKQ+ E +E E + +AR
Sbjct: 121 SSVELAGLSFAGDAARTKKQAEKNAAMTAWSALKQM-PEARKEPGNGCGGEEQEHVVVAR 179
Query: 181 AL 182
L
Sbjct: 180 VL 181
>gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis]
Length = 388
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 117/164 (71%), Positives = 134/164 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQR+CFNLP Y CIR+GPDHAPRF+ATVNFNGEIFESP+YCSTLRQAE A
Sbjct: 1 MYKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVA+++LS RGPS SL A+ LD+TGVYKNLLQEIA R G LP YTT RSG HLPVF
Sbjct: 61 AEVAVNTLSKRGPSGSLVAKDLDDTGVYKNLLQEIAHRAGLSLPVYTTTRSGPAHLPVFK 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS 164
IV++ G F G+PA KKQAE+N AMAAW++LKQ K+ S +
Sbjct: 121 CIVDVFGTRFNGKPAATKKQAEQNTAMAAWSALKQSEKDVDSGN 164
>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
Length = 190
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 125/155 (80%), Positives = 136/155 (87%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KNQLQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE+FESP Y STLR AEH+A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++LS RGP SLAARILDETGVYKNLLQE AQR G PLP YTT+RSG GHLPVFT
Sbjct: 61 AEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
V + G+ FTGE AK KKQAEKNAAM AW+SLKQ
Sbjct: 121 CTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQ 155
>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 397
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/143 (74%), Positives = 118/143 (82%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPS C REGPDHAPRFKATV FNGE F+ P C+TLRQAEH+A
Sbjct: 24 MYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 83
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SL AR+LDETGVYKNLLQE A R G LP YTT+RSG GH PVF+
Sbjct: 84 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 143
Query: 121 GIVELAGIAFTGEPAKNKKQAEK 143
VELAG++F G+PAK KK AEK
Sbjct: 144 STVELAGMSFAGDPAKTKKHAEK 166
>gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa]
gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/133 (77%), Positives = 115/133 (86%), Gaps = 2/133 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KNQLQELAQRSCFNLP+Y CIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARIL--DETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
AEVAL+ LS RGP+ SL AR+L DETG+YKNLLQE A R G LP YTT+RSG GH+PV
Sbjct: 61 AEVALNVLSSRGPARSLTARVLMKDETGIYKNLLQETAHRAGLNLPAYTTVRSGPGHVPV 120
Query: 119 FTGIVELAGIAFT 131
FT VELAG+ FT
Sbjct: 121 FTCTVELAGMNFT 133
>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
Length = 505
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 134/221 (60%), Gaps = 18/221 (8%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KNQLQ+LA R F+LPSY+ R+GP H P FKA V F E FESP + TLRQAEH+A
Sbjct: 266 MHKNQLQDLALRGGFSLPSYSSTRKGPPHVPLFKAFVTFKEETFESPDFYGTLRQAEHAA 325
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A VAL SL+ G S +DE+ +YKN LQE AQ+ G P P+Y T RSG H+P+F
Sbjct: 326 AAVALKSLTKEGFS-------IDESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFK 378
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
V+ AG F G+ A +KKQAEKNAAMAAW+++K + ++ +++ T ELEQ A
Sbjct: 379 STVKFAGTTFAGKEANSKKQAEKNAAMAAWSAVKNDSPDSEDTNT--GTKKELEQNMTAS 436
Query: 181 ALLNYRLKEKMAMASTLDSP--IPFARKFPVQNTRPTSPQP 219
K+K T+ P IP ++ P T PQP
Sbjct: 437 TTA---CKDK----DTVQQPHSIPLHKQLPSGTTIRVVPQP 470
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KN+LQE+AQ+ C +LP Y REGPDHAPRFKATV +NG FESP +C T ++A+++A
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAA 60
Query: 61 AEVALSSL 68
AE AL L
Sbjct: 61 AEFALEVL 68
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA--KNKKQAEKN 144
++KN LQE+AQ+ LP+Y + R G H P F V G AF PA K K+A+
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFES-PAFCKTAKEAQNA 59
Query: 145 AAMAAWTSL 153
AA A L
Sbjct: 60 AAEFALEVL 68
>gi|356577458|ref|XP_003556842.1| PREDICTED: probable sugar phosphate/phosphate translocator
At5g05820-like [Glycine max]
Length = 293
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 78/82 (95%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYT ++EGPDHAPRFKA VNFNG+IF++PHYCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARIL 82
AEV L+SL+HRGPS SLAA+IL
Sbjct: 61 AEVTLNSLTHRGPSHSLAAKIL 82
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF-TGEPAKNKKQAEKNA 145
+YKN LQE+AQR LP YT+++ G H P F IV G F T +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 146 AMAAWTSLKQ 155
A SL
Sbjct: 61 AEVTLNSLTH 70
>gi|388506512|gb|AFK41322.1| unknown [Lotus japonicus]
Length = 285
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 151/270 (55%), Gaps = 45/270 (16%)
Query: 191 MAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHRPASSGANE-- 248
MAM S ++PIPF +KF +Q+ RPTS QPP TSKILPL C K A R RP+ AN+
Sbjct: 1 MAM-SDPNAPIPFQKKFQIQSPRPTSTQPPPPKTSKILPLICQKAAPRSRPSLVTANDSV 59
Query: 249 --KPA------------------------QPQPYGSEGRVVRPQKFPAAGAAPYVPIRQY 282
KP+ PQ E RV RP KFPAAGAAPYVP+RQ
Sbjct: 60 RSKPSFATANDNPRSKYPPAAATSDRSGVPPQSSALESRVFRPLKFPAAGAAPYVPLRQM 119
Query: 283 RTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPP 342
R+ C G+APPVTVR VP FSAPP PPP + Q++RAP VR+AP V +RQA+PVYAAPP
Sbjct: 120 RSPCHGVAPPVTVRNMVPVFSAPPLPPPPTV-HQVIRAPPVRVAPPVNIRQAIPVYAAPP 178
Query: 343 V-HRDDSLTVRKEDPPTTPAPAQKV----------DSWTVFPPAILKDLPTVTAAAIQKE 391
V R ++ ++D T P Q+ + P + +P V AA +
Sbjct: 179 VPARKGEPSLIQKDLSTISIPCQQDILPHKIQETGKAENSLPVNFQQAIP-VYAAPPTRI 237
Query: 392 DTPTVTPAIQKQDCLTVASPVVQKENPPIV 421
D P++ IQK++ T+++P Q + PP V
Sbjct: 238 DEPSL---IQKEELPTISTPGQQDKLPPRV 264
>gi|449446736|ref|XP_004141127.1| PREDICTED: uncharacterized protein LOC101222879 [Cucumis sativus]
Length = 446
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 6/174 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YKN+LQ +Q+ LP YTC R+GP HA RF+ V +G+ +ES + TL+ AE++
Sbjct: 203 LYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENAV 262
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A+VAL SL G A+ ++G+YKNLLQE+AQ+ G LP Y+T +SG H+PVF
Sbjct: 263 AKVALMSLCQDG------AQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFV 316
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELE 174
V++ F G+P++ KKQAE +AA A+ ++K+ ++ ++ P + LE
Sbjct: 317 STVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIKEGSQSISTRKRAPSCDLALE 370
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+K +LQEL R + LP Y+ +++G DH PRF+ATV +G+ F SP + +QA++ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 61 AEVALSSLS 69
A++A S
Sbjct: 61 AKLAFDFFS 69
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG-EPAKNKKQAEKNA 145
++K LQE+ R LP+Y+ ++ G H P F V + G F P+K+ KQA+ +A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 146 AMAAW 150
A A+
Sbjct: 61 AKLAF 65
>gi|449527097|ref|XP_004170549.1| PREDICTED: double-stranded RNA-binding protein 4-like [Cucumis
sativus]
Length = 247
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 6/174 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YKN+LQ +Q+ LP YTC R+GP HA RF+ V +G+ +ES + TL+ AE++
Sbjct: 4 LYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENAV 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A+VAL SL G A+ ++G+YKNLLQE+AQ+ G LP Y+T +SG H+PVF
Sbjct: 64 AKVALMSLCQDG------AQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFV 117
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELE 174
V++ F G+P++ KKQAE +AA A+ ++K+ ++ ++ P + LE
Sbjct: 118 STVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIKEGSQSISTRKRAPSCDLALE 171
>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa]
gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 104/155 (67%), Gaps = 2/155 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K+QLQ AQ+ F LP Y+C R GP H+ RFK V NG+ FES Y STL +AEH+A
Sbjct: 87 LFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFKCKVTVNGQTFESLEYFSTLNKAEHAA 146
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A+ AL SL G ++ +DE+G YKNLLQE+AQR G LP Y+T +SG H+P F
Sbjct: 147 AKAALMSLLPNGVEE-VSFLFMDESG-YKNLLQELAQREGCGLPTYSTNKSGEAHVPTFI 204
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE+ G FTG+ AK KKQAE +AA A+T+LKQ
Sbjct: 205 STVEIEGEIFTGQGAKTKKQAEMSAAKTAYTALKQ 239
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 71/130 (54%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK++LQEL Q+ + LP+Y R+G H PRF ATV N F SP +T ++A++ A
Sbjct: 1 MYKSKLQELCQQRAWELPTYESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKKAQNDA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A++A S PSPS + + D ++K+ LQ AQ+ LP Y+ R G H F
Sbjct: 61 AKLAYEHFSISRPSPSPSPPVSDMQRLFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFK 120
Query: 121 GIVELAGIAF 130
V + G F
Sbjct: 121 CKVTVNGQTF 130
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YKN LQELAQR LP+Y+ + G H P F +TV GEIF + T +QAE SAA
Sbjct: 172 YKNLLQELAQREGCGLPTYSTNKSGEAHVPTFISTVEIEGEIF-TGQGAKTKKQAEMSAA 230
Query: 62 EVALSSLSHR 71
+ A ++L R
Sbjct: 231 KTAYTALKQR 240
>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 96/155 (61%), Gaps = 7/155 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YK QLQ AQ+ LP Y+ GP H RFK+ V + +ESP + TL+ AEH+A
Sbjct: 158 LYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAA 217
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A++AL SLS G D+ GVYKNLLQE+A++ G LP Y+T +SG+ H+P F
Sbjct: 218 AKLALMSLSPAGFQE-------DDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFL 270
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE+ G F G+ AK KK AE NAA AA+T LK+
Sbjct: 271 STVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKE 305
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M K +LQEL R +N P Y+ ++GP H P F ATV+ G F + H + ++A+ +A
Sbjct: 1 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 60
Query: 61 AEVALSSLSHRGPSP 75
A +A+ L+ P P
Sbjct: 61 AGLAIQYLTDPKPPP 75
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF-TGEPAKNKKQAEKNAAM 147
K LQE+ R P+Y+T + G H P F V + G++F T PA++ K+A+ NAA
Sbjct: 3 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 62
Query: 148 AAWTSL 153
A L
Sbjct: 63 LAIQYL 68
>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
Length = 355
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 93/155 (60%), Gaps = 8/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+ F+S + TL+ AEH+A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A++A++SL+ + P A YKNLLQEIAQ+ + LP Y T SG H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE AG F+GE AK KK AE +AA A+ S+K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKN 150
>gi|22331912|ref|NP_191839.2| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|42572769|ref|NP_974480.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|75244610|sp|Q8H1D4.1|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4; Short=AtDRB4
gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 355
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 93/155 (60%), Gaps = 8/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+ F+S + TL+ AEH+A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A++A++SL+ + P A YKNLLQEIAQ+ + LP Y T SG H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE AG F+GE AK KK AE +AA A+ S+K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKN 150
>gi|238480134|ref|NP_001154686.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 329
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 93/155 (60%), Gaps = 8/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+ F+S + TL+ AEH+A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A++A++SL+ + P A YKNLLQEIAQ+ + LP Y T SG H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE AG F+GE AK KK AE +AA A+ S+K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKN 150
>gi|414880296|tpg|DAA57427.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 459
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+QLQ AQ+ LPSY I G HAP FK+ V +G+ FESP YC T+++AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
+VAL SL +P+ ++L + YKNLLQE+ Q+ G PLP Y T + F
Sbjct: 155 KVALMSLPQEA-NPT--QQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSS 165
VE+ G+ F G+P KKQAE NAA +A+ K + + SS S
Sbjct: 212 TVEIHGVTFHGKPGNTKKQAEMNAAKSAFEHFKNINHDAGSSGS 255
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCS-TLRQAEHS 59
MYK++LQEL Q+ + P Y REGP HAP F+ATV NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALSSL-----SHRGPSPSLAARILDETGV-YKNLLQEIAQRVGAPLPQYTTIRSGL 113
AA A +L + P+P+ A ET + YK+ LQ AQ+ G LP Y I G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 114 GHLPVFTGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAKET 160
H P+F V + G F E K+AE AA A SL Q A T
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANPT 168
>gi|293336145|ref|NP_001169453.1| uncharacterized protein LOC100383324 [Zea mays]
gi|224029475|gb|ACN33813.1| unknown [Zea mays]
Length = 459
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+QLQ AQ+ LPSY I G HAP FK+ V +G+ FESP YC T+++AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
+VAL SL +P+ ++L + YKNLLQE+ Q+ G PLP Y T + F
Sbjct: 155 KVALMSLPQEA-NPT--QQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSS 165
VE+ G+ F G+P KKQAE NAA +A+ K + + SS S
Sbjct: 212 TVEIRGVTFHGKPGNTKKQAEMNAAKSAFEHFKNINHDAGSSGS 255
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCS-TLRQAEHS 59
MYK++LQEL Q+ + P Y REGP HAP F+ATV NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALSSL-----SHRGPSPSLAARILDETGV-YKNLLQEIAQRVGAPLPQYTTIRSGL 113
AA A +L + P+P+ A ET + YK+ LQ AQ+ G LP Y I G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 114 GHLPVFTGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAKET 160
H P+F V + G F E K+AE AA A SL Q A T
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANPT 168
>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa]
gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 98/156 (62%), Gaps = 10/156 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++KNQLQ AQ+ F LP Y+C R GP HA RFK V NG+ +ES Y TL +AE +A
Sbjct: 4 LFKNQLQTYAQKRNFTLPVYSCERVGPPHASRFKCKVTVNGQTYESQEYFPTLNKAELAA 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGV-YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
A+ AL SL G ++E G YK+LLQE+AQR G LP Y T +SG H+P F
Sbjct: 64 AKAALMSLLSNG---------VEEDGFGYKSLLQELAQREGCGLPTYWTDKSGEAHVPTF 114
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE+ G FTG+ AK KKQAE +AA A+T+L+Q
Sbjct: 115 VSKVEIEGEIFTGQGAKTKKQAEMSAAKIAYTALQQ 150
>gi|75251129|sp|Q5N8Z0.1|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=dsRNA-binding protein 1
gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 441
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP Y T+++AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
++AL SL S + ++ + YKNLLQE+AQ+ G LP Y+T G +P+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS 164
V +F GEPA KKQAE NAA A+ + K SS+
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFEDRRKNALSST 246
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK++LQEL Q+ + P YT GP HAP F ATV+ NG F +P + + H+
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 61 AEVALSSLSHRGPSPSLAARILDET-GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
A A ++ H P E YK+ LQ AQ+ G LP Y TIR G GH F
Sbjct: 61 A--AKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 TGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAKET 160
+V + G AF E K+AE AA A SL Q A +
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEASSS 160
>gi|414880297|tpg|DAA57428.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 472
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+QLQ AQ+ LPSY I G HAP FK+ V +G+ FESP YC T+++AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
+VAL SL +P+ ++L + YKNLLQE+ Q+ G PLP Y T + F
Sbjct: 155 KVALMSLPQEA-NPT--QQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSS 165
VE+ G+ F G+P KKQAE NAA +A+ K + + SS S
Sbjct: 212 TVEIHGVTFHGKPGNTKKQAEMNAAKSAFEHFKNINHDAGSSGS 255
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCS-TLRQAEHS 59
MYK++LQEL Q+ + P Y REGP HAP F+ATV NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALSSL-----SHRGPSPSLAARILDETGV-YKNLLQEIAQRVGAPLPQYTTIRSGL 113
AA A +L + P+P+ A ET + YK+ LQ AQ+ G LP Y I G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 114 GHLPVFTGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAKET 160
H P+F V + G F E K+AE AA A SL Q A T
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANPT 168
>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
Length = 448
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 93/170 (54%), Gaps = 15/170 (8%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YKNQLQE AQ+ LPSY I G AP FK+ V +G+ FESP YC T+++AE +AA
Sbjct: 94 YKNQLQEYAQKRGKLLPSYRPIHGGSLRAPLFKSEVTIDGQTFESPEYCRTMKEAETAAA 153
Query: 62 EVALSSL------SHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGH 115
+VAL L + + P PS++ YKNLLQE Q+ G PLP Y T +
Sbjct: 154 KVALMFLPQEAGPTQQLPLPSVS---------YKNLLQEFVQKEGFPLPTYDTTLDVSNY 204
Query: 116 LPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSS 165
F VE+ G F GEP KKQAE NAA A+ K + + S+ S
Sbjct: 205 SAAFISTVEIQGATFRGEPGNTKKQAEMNAAKIAFQHFKDINHDAGSAGS 254
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCS-TLRQAEHS 59
MYK++LQEL Q+ + P Y REGP H P F+ATV NGE F SP ++++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPVYEPTREGPAHTPLFRATVVVNGESFSSPDEGERSVKEACNL 60
Query: 60 AAEVALSSLSHRGPSPSLAARILDETGV-----YKNLLQEIAQRVGAPLPQYTTIRSGLG 114
AA A +LS A YKN LQE AQ+ G LP Y I G
Sbjct: 61 AAMAAFENLSALPAEAPAPAPAPAPPPPETQLRYKNQLQEYAQKRGKLLPSYRPIHGGSL 120
Query: 115 HLPVFTGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLA 157
P+F V + G F E + K+AE AA A L Q A
Sbjct: 121 RAPLFKSEVTIDGQTFESPEYCRTMKEAETAAAKVALMFLPQEA 164
>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]
Length = 351
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP Y T+++AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
++AL SL S + ++ + YKNLLQE+AQ+ G LP Y+T G +P+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS 164
V +F GEPA KKQAE NAA A+ + K SS+
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFEDRRKNALSST 246
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK++LQEL Q+ + P YT GP HAP F ATV+ NG F +P + + H+
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 61 AEVALSSLSHRGPSPSLAARILDET-GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
A A ++L H P E YK+ LQ AQ+ G LP Y TIR G GH F
Sbjct: 61 A--AKAALDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 TGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
+V + G AF E K+AE AA A SL Q A SSSE
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEA-----SSSE 161
>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]
Length = 1030
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP Y T+++AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
++AL SL S + ++ + YKNLLQE+AQ+ G LP Y+T G +P+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS 164
V +F GEPA KKQAE NAA A+ + K SS+
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFEDRRKNALSST 246
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 83/177 (46%), Gaps = 4/177 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK++LQEL Q+ + P YT G HAP F ATV+ NG F +P + + H+
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGLAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 61 AEVALSSLSHRGPSPSLAARILDET-GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
A A ++ H P E YK+ LQ AQ+ G LP Y TIR G GH F
Sbjct: 61 A--AKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 TGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQ 175
+V + G AF E K+AE AA A SL Q A + +P + L Q
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEASSSEQVPVQPLSYKNLLQ 175
>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa]
gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]
Length = 281
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 98/155 (63%), Gaps = 8/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++KNQLQ AQ+ F P Y+C R GP HA RFK V NG+ +ES Y TL +AE++A
Sbjct: 135 LFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTYESREYFPTLSKAENAA 194
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A+ AL SL G DE+G YKNLLQ++AQR G LP Y T +SG H P F
Sbjct: 195 AKAALMSLLPNGVEE-------DESG-YKNLLQDMAQREGCGLPTYFTEKSGEAHAPTFI 246
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE+ G+ FTG+ A+NKKQAE +AA A+T+ ++
Sbjct: 247 STVEIDGVNFTGKEARNKKQAEMSAAKIAYTARRR 281
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 47/69 (68%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK++LQ+L+Q+ + +P Y +EG +H+P F ATV + +F +P S+ ++A+++A
Sbjct: 1 MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60
Query: 61 AEVALSSLS 69
A++A + S
Sbjct: 61 AKLAHNYFS 69
>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
Length = 299
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK+QLQE AQ+S + +P Y I++G H PRF+A+V NG +ES L+ AEHSA
Sbjct: 1 MYKSQLQEFAQKSGWTVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A+ AL SL+ S A TG+ KN+LQE AQR G LP Y +G H VF
Sbjct: 61 AKKALDSLTGGANGASTDASGSSMTGLCKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFA 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157
VE+ G+ + G AK+KK+AE AA A ++K+LA
Sbjct: 121 ATVEIGGVLYKGGTAKSKKEAEVKAARTAILAIKELA 157
>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
Length = 345
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 87/155 (56%), Gaps = 18/155 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+ F+S + TL+ AEH+A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A++A ++ YKNLLQEIAQ+ + LP Y T SG H P FT
Sbjct: 64 AKIAGIDVA------------------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 105
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE AG F+GE AK KK AE +AA A+ S+K
Sbjct: 106 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKN 140
>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 151
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 96/154 (62%), Gaps = 4/154 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK+QLQE AQ+ PSY ++EG H PRFK+TV NG +ES TLR AEH+A
Sbjct: 1 MYKSQLQEYAQKQGLMSPSYEYVKEGASHEPRFKSTVWVNGRGYESAPGYPTLRSAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A+ AL L + E+G+ KNLLQE AQ+ G PLPQY ++R G H VF+
Sbjct: 61 AKAALDFLQ----KTQFKVVPVHESGLCKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFS 116
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
VE+AG++++G AK+KK+AE AA A +++
Sbjct: 117 STVEIAGVSYSGGCAKSKKEAEIKAARTALLAIQ 150
>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 87/163 (53%), Gaps = 18/163 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+ F+S + TL+ AEH+A
Sbjct: 4 VYKGQLQAYALKHNLELPVYANEREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAEHAA 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A++AL+SL+ + P +IAQ+ + LP Y T SG H P F
Sbjct: 64 AKIALASLTPQSPE------------------AKIAQKENSMLPVYATATSGPSHSPTFI 105
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASS 163
VE AG FTG+ AK KK AE +AA A+ S+K SS
Sbjct: 106 STVEFAGKVFTGDEAKTKKLAEMSAAKIAFMSIKNGNSNQTSS 148
>gi|218196103|gb|EEC78530.1| hypothetical protein OsI_18477 [Oryza sativa Indica Group]
Length = 562
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 61/74 (82%), Gaps = 4/74 (5%)
Query: 33 FKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSLAARILDETGVYKNLL 92
FKATVNFNGE FESP +CSTLR AEH+AAEVAL+ LS RGPS SLAA++LDETG+YKNLL
Sbjct: 58 FKATVNFNGETFESPAFCSTLRLAEHAAAEVALNELSKRGPSSSLAAKVLDETGIYKNLL 117
Query: 93 QEIAQ----RVGAP 102
QE A RVG P
Sbjct: 118 QETAHRAVPRVGEP 131
>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa]
gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKN+LQE Q+S LP Y + EGP H PRF++TV +G + S + AE
Sbjct: 139 MYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDV 198
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A +AL S+ R +L +T K++L E A +V P Y T++S G LPVF
Sbjct: 199 ANLALESILKRVKDEG-CPLLLGDTVFCKSILNEFAVKVNREKPTYNTVQSP-GLLPVFI 256
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
+ G+++TG+ +NKK+AE+ AA A SL
Sbjct: 257 STLVFDGVSYTGDAGRNKKEAEQLAARAVILSL 289
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 74 SPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGE 133
S L + L + +YKN LQE Q+ LP Y T+ G H+P F V + G + +
Sbjct: 126 SKKLVKKGLPDNLMYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQ 185
Query: 134 PA-KNKKQAEKNAAMAAWTSLKQLAKE 159
++K AE++ A A S+ + K+
Sbjct: 186 KTFLHRKAAEQDVANLALESILKRVKD 212
>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
Length = 283
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQR P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL L+ + + E G+ KNLLQE AQ++ +P Y RS LG P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K KK+AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
Length = 283
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQR P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL L+ + + E G+ KNLLQE AQ++ +P Y RS LG P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K KK+AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
Length = 283
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQR P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL L+ + + E G+ KNLLQE AQ++ +P Y RS LG P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K KK+AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
Length = 274
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQR P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL L+ + + E G+ KNLLQE AQ++ +P Y RS LG P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K KK+AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|122221791|sp|Q0IV63.1|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
Full=dsRNA-binding protein 7
gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|387538567|gb|AFJ79552.1| double stranded RNA binding protein 1-2 [Oryza sativa Indica Group]
Length = 473
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 93/167 (55%), Gaps = 6/167 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
AEVAL + P+ A I + ETG+ KNLLQE AQ++ +P Y +S G P
Sbjct: 93 AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSS 165
F VE+ GI + G A+ KK AE AA A +++ ++ +A+ ++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 195
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 73 PSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG 132
P+ + A ++ V+K+ LQE AQ+ G P+Y T + G H PVF V + ++
Sbjct: 19 PNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDS 78
Query: 133 EPA-KNKKQAEKNAAMAAWTSL 153
P N+K AE++AA A +
Sbjct: 79 LPGFFNRKAAEQSAAEVALMEI 100
>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
Length = 283
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQR P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL L+ + + E G+ KNLLQE Q++ +P Y RS LG P F
Sbjct: 75 AEVALQELAKSSDLTQCVSLPVHEMGLCKNLLQEYTQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K KK+AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
gi|122234185|sp|Q0IQN6.1|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
Full=dsRNA-binding protein 8
gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
Length = 424
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
AEVAL + P+ A I + ETG+ KNLLQE AQ++ +P Y +S G P
Sbjct: 93 AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
F VE+ GI + G A+ KK AE AA A +++ ++ +A+ +++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATK 196
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 73 PSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG 132
P+ + A ++ V+K+ LQE AQ+ G P+Y T + G H PVF V + ++
Sbjct: 19 PNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDS 78
Query: 133 EPA-KNKKQAEKNAAMAAWTSL 153
P N+K AE++AA A +
Sbjct: 79 LPGFFNRKAAEQSAAEVALMEI 100
>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
Length = 275
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQR P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL L+ + + E G+ KNLLQE AQ++ +P Y RS LG P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K KK+AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|242045250|ref|XP_002460496.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
gi|241923873|gb|EER97017.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
Length = 123
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 63/125 (50%), Gaps = 42/125 (33%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQL L SY C EGPDH PRF+A V FN E FE P C+TLRQAEH+A
Sbjct: 1 MYKNQL----------LTSYVCTPEGPDHTPRFRAAVTFNSETFEGPSGCTTLRQAEHAA 50
Query: 61 AEVALSSLSHRGPSPSLAARIL--------------------------------DETGVY 88
AEV L+ LS R PS SLA ++ DETG+Y
Sbjct: 51 AEVTLARLSLRAPSTSLATQVFVITTVIFLRVLCVLLLAAVDLDVEGETVHIAQDETGLY 110
Query: 89 KNLLQ 93
KNL Q
Sbjct: 111 KNLFQ 115
>gi|356551805|ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]
Length = 434
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 4/155 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKN+LQE +S N P Y I EG DH+P+F++TV + S S + AEH A
Sbjct: 1 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTIRSGLGH-LPV 118
A +AL S+ R L+ ++++ + K+++ E A ++ P Y T + LG LP+
Sbjct: 61 ARLALESILKRTRDEGLS--LVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPI 118
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
F + G ++TG+PA+ KK+AE++AA AA S+
Sbjct: 119 FITSLVFNGTSYTGDPARTKKEAEQSAAKAAILSI 153
>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
Length = 410
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
AEVAL + P+ A I + ETG+ KNLLQE AQ++ +P Y +S G P
Sbjct: 93 AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
F VE+ GI + G A+ KK AE AA A +++ ++ +A+ +++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATK 196
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 73 PSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG 132
P+ + A ++ V+K+ LQE AQ+ G P+Y T + G H PVF V + ++
Sbjct: 19 PNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDS 78
Query: 133 EPA-KNKKQAEKNAAMAAWTSL 153
P N+K AE++AA A +
Sbjct: 79 LPGFFNRKAAEQSAAEVALMEI 100
>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
Length = 283
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQR P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL L+ + + E G+ KNLLQE AQ++ +P Y RS LG P F
Sbjct: 75 AEVALQGLAKSSDLTQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K KK+AE ++ A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISSGRTALIAIQSESK 173
>gi|357155520|ref|XP_003577147.1| PREDICTED: double-stranded RNA-binding protein 8-like [Brachypodium
distachyon]
Length = 447
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 2/167 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y ++EGP H P FK+ V +G ++S + + AE SA
Sbjct: 13 VFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFFSRKAAEQSA 72
Query: 61 AEVALSSLSHRGPSPSLAAR-ILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
AEVAL ++ P+ A + ETG+ KNLLQE AQ++ +P Y + R G P F
Sbjct: 73 AEVALMEIAKSLALPTSATIPAVQETGLCKNLLQEYAQKMNYAIPSYISHRQASGVAP-F 131
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
VE+ GI + G A+ KK+AE AA A +++ + +A+ +S+
Sbjct: 132 ISTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQGQSDGSANGASK 178
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 78 AARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-K 136
AA +++ V+K+ LQE AQ+ G P P+Y T++ G H PVF V + G+++ P
Sbjct: 4 AASVVENCYVFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFF 63
Query: 137 NKKQAEKNAAMAAWTSLKQLAKETA 161
++K AE++AA A L ++AK A
Sbjct: 64 SRKAAEQSAAEVA---LMEIAKSLA 85
>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
Length = 394
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y ++EGP H P FK+TV N +ES + + AE SA
Sbjct: 37 VFKSRLQEYAQKAGLPTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSRKAAEQSA 96
Query: 61 AEVALSSLSHRGP-SPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
AEVAL ++ P + + + + ETG+ KNLLQE AQ++ +P Y + G P F
Sbjct: 97 AEVALMEIAMSAPVAETRSIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP-F 155
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS 164
VE+ GI + G A+ KK+AE AA A +++ ++ A+ +
Sbjct: 156 ICTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQGQSEGCANGA 200
>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
Length = 274
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQR P Y I+EGP H P ++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL L+ + + E G+ KNLLQE AQ++ +P Y RS LG P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K KK+AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
Length = 434
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQR P Y ++EGP H P FK+TV N +ES + + AE SA
Sbjct: 37 VFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQSA 96
Query: 61 AEVALSSLSHRGPSPSLAAR-ILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
AEVAL ++ P + + ETG+ KNLLQE AQ++ +P Y + G P F
Sbjct: 97 AEVALMEIAMSAPVTEIRNMPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP-F 155
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS 164
VE+ GI + G A+ KK+AE AA A +++ ++ A+ +
Sbjct: 156 VCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQSQSEGGANGA 200
>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 7/193 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y I+EGP H P F++TV ++S + AE SA
Sbjct: 8 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNRKAAEQSA 67
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGL-GHLPVF 119
AEVAL L+ G ++ + ETG+ KNLLQE AQ++ +P Y + G VF
Sbjct: 68 AEVALVELAKAGQINESTSQPVHETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVF 127
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIA 179
VE+ GI + G AK KK+AE AA A +++ +S S +P N +L I
Sbjct: 128 KCTVEIGGIRYIGASAKTKKEAEIKAARTALLAIQ------SSGSDKPSGNSQLTVIPCR 181
Query: 180 RALLNYRLKEKMA 192
+ + ++E+MA
Sbjct: 182 KRGVETSVQEEMA 194
>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
Length = 283
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y ++EGP H F++TV +G ++S + AE SA
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL LS + + E G+ KNLLQE AQ++ +P Y +S LG P F
Sbjct: 75 AEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K KK+AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|387538561|gb|AFJ79549.1| double stranded RNA binding protein 1-1 [Oryza sativa Indica Group]
Length = 377
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 6/168 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N + S S + AE SA
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
AEVAL + P+ A I + ETG+ KNLLQE AQ++ +P Y + G P
Sbjct: 95 AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP- 150
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
F VE+ GI + G A+ KK AE AA A +++ ++ +A+ +++
Sbjct: 151 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATK 198
>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera]
gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
Length = 400
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y I+EGP H P FK+TV N ++S S + AE SA
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGL-GHLPVF 119
AEVAL L+ G ++ + ETG+ KNLLQE AQ++ +P Y + G F
Sbjct: 75 AEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
+ VE+ GI + G A+ KK+AE AA A +++
Sbjct: 135 SCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIR 169
>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y I+EGP H P FK+TV N ++S S + AE SA
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGL-GHLPVF 119
AEVAL L+ G ++ + ETG+ KNLLQE AQ++ +P Y + G F
Sbjct: 75 AEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
+ VE+ GI + G A+ KK+AE AA A +++
Sbjct: 135 SCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIR 169
>gi|414588756|tpg|DAA39327.1| TPA: bcpLH protein [Zea mays]
Length = 1158
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQR P Y ++EGP H P FK+TV N +ES + + AE SA
Sbjct: 761 VFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQSA 820
Query: 61 AEVALSSLSHRGPSPSLAAR-ILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
AEVAL ++ P + + ETG+ KNLLQE AQ++ +P Y + G P F
Sbjct: 821 AEVALMEIAMSAPVTEIRNMPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP-F 879
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS 164
VE+ GI + G A+ KK+AE AA A +++ ++ A+ +
Sbjct: 880 VCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQSQSEGGANGA 924
>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|122169278|sp|Q0DJA3.1|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3
gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 437
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 6/168 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N + S S + AE SA
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
AEVAL + P+ A I + ETG+ KNLLQE AQ++ +P Y + G P
Sbjct: 95 AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP- 150
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
F VE+ GI + G A+ KK AE AA A +++ ++ +A+ +++
Sbjct: 151 FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATK 198
>gi|359488195|ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
vinifera]
gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KN+LQE QRS LP Y + EG HAP+F++TV +G + SP+ S + AE
Sbjct: 22 MHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDV 81
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A +AL +S + I ++T K++L E A ++ P YTT++ G LPVF
Sbjct: 82 ARLALEFISKKIKDEG-CPLIREDTVFCKSILNEFAVKMNLEKPTYTTVQPE-GLLPVFV 139
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
+ G+ +TG+ +NKK+AE+ AA S+
Sbjct: 140 SSLVFNGVTYTGDAGRNKKEAEQLAARTVILSI 172
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 82 LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG-EPAKNKKQ 140
L E ++KN LQE QR PLP Y T+ G H P F V + G +T ++K
Sbjct: 17 LPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKA 76
Query: 141 AEKNAAMAAWTSLKQLAKE 159
AE++ A A + + K+
Sbjct: 77 AEQDVARLALEFISKKIKD 95
>gi|357131055|ref|XP_003567159.1| PREDICTED: double-stranded RNA-binding protein 1-like [Brachypodium
distachyon]
Length = 608
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+QLQ AQ+ ++P Y IR GP HA FK TV +G+ FESP T+++AE +AA
Sbjct: 89 YKSQLQIYAQKRRKDIPFYHSIRSGPPHATLFKTTVTIDGQTFESPQEYHTIKEAEFAAA 148
Query: 62 EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
VAL SL P ++L +T + Q++A++ G+PL Y H +
Sbjct: 149 RVALMSLPQEANPPQ---QLLVQTISHNRARQDLAEKEGSPLDVYNATLDDSNHFSISKE 205
Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSS 165
VE G +F P KKQ+E A A+ + L ++ S +S
Sbjct: 206 KVETQGRSFQAGPGHTKKQSEMIATELAFQHSEDLDNDSCSLAS 249
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPH---YCSTLRQAE 57
M+K++L EL + + P+YT EGP H P+F+ATV NG F SP + +T ++A+
Sbjct: 1 MFKSRLNELCHQQRWAPPAYTHQLEGPAHTPKFRATVVVNGSEFHSPEEEAWPTTAKEAQ 60
Query: 58 HSAAEVA---LSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLG 114
AA+ A LSSL P P ++ YK+ LQ AQ+ +P Y +IRSG
Sbjct: 61 SLAAKAAFEHLSSLPPPPPPPQPGTQV-----DYKSQLQIYAQKRRKDIPFYHSIRSGPP 115
Query: 115 HLPVFTGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAK 158
H +F V + G F + K+AE AA A SL Q A
Sbjct: 116 HATLFKTTVTIDGQTFESPQEYHTIKEAEFAAARVALMSLPQEAN 160
>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y ++EGP H F++TV NG + S + AE SA
Sbjct: 15 VFKSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVF 119
AEVAL L+ ++ + ETG+ KNLLQE AQ++ +P Y R LG F
Sbjct: 75 AEVALQELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQRIETLGRATQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG + KK AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSESK 173
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNA 145
V+K+ LQE AQ+ P Y T++ G H F V L G+ + P N+K AE++A
Sbjct: 15 VFKSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAEQSA 74
Query: 146 AMAAWTSLKQLAKETASS 163
A A L++LAK + S
Sbjct: 75 AEVA---LQELAKSSELS 89
>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
Length = 277
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y ++EGP H F++TV +G ++S + AE SA
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL LS + + E G+ KNLLQE AQ++ +P Y +S LG P F
Sbjct: 75 AEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K K++AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQTESK 173
>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 289
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKN+LQE QR LP Y + EG H P+F++TV +GE + S + S ++AE
Sbjct: 13 MYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDV 72
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
A++AL+S++ + + E V K++L E A ++ +P Y T++ G G P+F
Sbjct: 73 AKLALTSITEKIKDEIKDEKFTHEDTVACKSILNEYAVKMQLEMPTYNTVKQG-GLFPIF 131
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
G+ + G+ + KK+AE+ AA AA SL
Sbjct: 132 VSSSVFNGVTYNGDIGRTKKEAEQLAARAAVLSL 165
>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
Length = 278
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y ++EGP H F++TV +G ++S + AE SA
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVF 119
AEVAL LS + + E G+ KNLLQE AQ++ +P Y +S LG P F
Sbjct: 75 AEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG K K++AE +A A +++ +K
Sbjct: 135 TCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQTESK 173
>gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+QLQ AQ+ +LPSY IR GP HAP F++TV +G FESP T ++AE +AA
Sbjct: 114 YKSQLQVYAQKRHKDLPSYDTIRNGPPHAPLFRSTVTIDGRTFESPQDYHTTKEAEFAAA 173
Query: 62 EVALSSLSHR-GPSPSL---AARILDETGV---YKNLLQEIAQRVGAPLPQYTTIRSGLG 114
VAL SLS PS + +A + G+ +K LQ AQ+ G LP+Y + G
Sbjct: 174 RVALMSLSQEANPSEQMLVGSASCISLPGIQINHKLQLQIYAQKRGKQLPKYRRTQEGPS 233
Query: 115 HLPVFTGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDEL 173
H P+F V + G F + + K++E AA A SL Q SS+P + +L
Sbjct: 234 HAPLFKSTVTIDGQTFESPQYCQTIKESENAAANLALMSLTQ-----EGHSSKPVSYSQL 288
Query: 174 E 174
E
Sbjct: 289 E 289
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 80/162 (49%), Gaps = 9/162 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPH---YCSTLRQAE 57
M+K QL +L Q+ + P Y EGP H RF+ATV NGE++ SP T ++A
Sbjct: 27 MFKAQLNQLCQQRRWPAPDYAHRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGTAKEAH 86
Query: 58 HSAAEVALSSLSHRGPSPSLAARILDETGV-YKNLLQEIAQRVGAPLPQYTTIRSGLGHL 116
+ AA+ A LS + ET + YK+ LQ AQ+ LP Y TIR+G H
Sbjct: 87 NLAAKAAFERLS----ALPPPPPPQSETQLPYKSQLQVYAQKRHKDLPSYDTIRNGPPHA 142
Query: 117 PVFTGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLA 157
P+F V + G F + K+AE AA A SL Q A
Sbjct: 143 PLFRSTVTIDGRTFESPQDYHTTKEAEFAAARVALMSLSQEA 184
>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 344
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y I+EGP H P F +TV N ++S S + AE SA
Sbjct: 8 VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSA 67
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVF 119
AEVAL LS ++ + ETG+ KNLLQE AQ++ +P Y + G G +F
Sbjct: 68 AEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLF 127
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
+ VE+ GI + G AK KK+AE AA A +++
Sbjct: 128 SCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQ 162
>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 351
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y I+EGP H P F +TV N ++S S + AE SA
Sbjct: 15 VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVF 119
AEVAL LS ++ + ETG+ KNLLQE AQ++ +P Y + G G +F
Sbjct: 75 AEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
+ VE+ GI + G AK KK+AE AA A +++
Sbjct: 135 SCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQ 169
>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula]
gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]
Length = 780
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K+QLQE AQ++ P Y +EGP H P F++TV N ++S + AE SA
Sbjct: 16 VFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSA 75
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGL--GHLPV 118
AEVAL L+ G + + ETG+ KNLLQE AQ++ +P Y + + G P+
Sbjct: 76 AEVALMELAKTGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQSKKDDTPPGRAPL 135
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
++ V++ G+ + G AK K++AE AA A +++
Sbjct: 136 YSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAIQ 171
>gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa]
gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 75/155 (48%), Gaps = 39/155 (25%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++KNQLQ AQ+ F+LP Y+C R GP HA RFK NG+ +ES Y TL +AE
Sbjct: 176 LFKNQLQTYAQKRNFSLPVYSCERMGPPHAIRFKCKFTINGQTYESREYFPTLSKAE--- 232
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
+R G P Y T +SG H P F
Sbjct: 233 ------------------------------------KREGCGFPTYCTEKSGEAHAPTFI 256
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE+ G++FTG+ A+ KKQAE +AA A+T+ ++
Sbjct: 257 STVEIDGVSFTGKEARTKKQAEMSAAKIAYTARRR 291
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK+ LQ + + + LP+Y ++G DH+P F ATV N F SP S+ ++A+ A
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60
Query: 61 AEVALSSLSH-RGPSPSLAA 79
A++A S PSP L+
Sbjct: 61 AKLAYDHFSLISSPSPYLSG 80
>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCS-----TLRQ 55
++K++LQE AQ++ P Y I+EGP H P F++TV I + Y S +
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTV-----IVKDVRYDSLPGFFNRKA 69
Query: 56 AEHSAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGL-G 114
AE SAAEVAL L+ G ++ ++ETG+ KNLLQE AQ++ +P Y + G
Sbjct: 70 AEQSAAEVALVELAKAGEINESTSQPVNETGLCKNLLQEYAQKMNYAIPLYECQKDETPG 129
Query: 115 HLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
VF VE+ GI + G K KK+AE AA A +++ + S SS+
Sbjct: 130 RGLVFKCTVEIGGIRYIGASTKTKKEAEIKAARTALLAIQSSGSDKQSGSSQ 181
>gi|18391056|ref|NP_563850.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
gi|75218980|sp|O04492.1|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=Protein HYPONASTIC LEAVES 1; AltName:
Full=dsRNA-binding protein 1; Short=AtDRB1
gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
Length = 419
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y ++EGP H F++TV +G + S + AE SA
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVF 119
AEVAL L+ ++ + ETG+ KNLLQE AQ++ +P Y + LG + F
Sbjct: 75 AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG + KK AE +A A +++ K
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTK 173
>gi|357462125|ref|XP_003601344.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490392|gb|AES71595.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 372
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 32/195 (16%)
Query: 7 QELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALS 66
Q A+++ + P +T EGP H R+KA V +G+ FESP +T+++AE +AA+ +
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF-VG 171
Query: 67 SLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELA 126
P PS K+LLQE+++R G P Y T + G H+P F VE+
Sbjct: 172 MFQKDEPCPS------------KSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVE 219
Query: 127 GIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIARALLNYR 186
GI F G+ +K+K +AE++AA A+ +LK+ T A L+
Sbjct: 220 GIGFHGKASKSKNKAEEDAAKIAYITLKECGSHT-------------------YADLSSS 260
Query: 187 LKEKMAMASTLDSPI 201
+ EK A+ ST +S I
Sbjct: 261 IGEKQAVKSTHESHI 275
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHS 59
M+K++LQEL R ++LP Y+ +GP H P FK +V NG F S ++ +A++
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 60 AAEVALSSLS 69
AA A + +
Sbjct: 61 AAMKAFRNFT 70
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAE 62
K+ LQEL++R F+ P+Y + GP H P F +TV G F + +AE AA+
Sbjct: 182 KSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGIGFHGK-ASKSKNKAEEDAAK 240
Query: 63 VALSSLSHRG 72
+A +L G
Sbjct: 241 IAYITLKECG 250
>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 5/169 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGL-GHLPVF 119
AEVAL L + + ETG+ KNLLQE AQ++ +P Y + G VF
Sbjct: 75 AEVALVELVKSNAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPE 168
+ V++ GI + G AK KK+AE AA A +++ +AS +SE +
Sbjct: 135 SCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQS----SASHASENQ 179
>gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis]
Length = 346
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+K +LQE Q++ F LP Y + EG DH PRFK TV NG ++SP + + A+++A
Sbjct: 1 MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AE A+ L ++G P + IL + KN+L++IA + P P Y + G H P FT
Sbjct: 61 AEAAVKKLVNQGLLP-IEEVILPKKP--KNVLEDIALKKNMPPPSYKFSKEGEAHCPTFT 117
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
IVE+ G + G+PA +KK A AA A ++
Sbjct: 118 AIVEINGAFYAGDPANSKKDATNKAACKAIRAI 150
>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGL-GHLPVF 119
AEVAL L + + ETG+ KNLLQE AQ++ +P Y + G VF
Sbjct: 75 AEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETA 161
+ V++ GI + G AK KK+AE AA A +++ A + +
Sbjct: 135 SCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQAS 176
>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
Length = 359
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGL-GHLPVF 119
AEVAL L + + ETG+ KNLLQE AQ++ +P Y + G VF
Sbjct: 75 AEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETA 161
+ V++ GI + G AK KK+AE AA A +++ A + +
Sbjct: 135 SCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQAS 176
>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
Length = 361
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 16 VFKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNRKAAEQSA 75
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRS---GLGHLP 117
AEVAL L+ ++ + ETG+ KNLLQE AQ++ +P Y ++ G G L
Sbjct: 76 AEVALMELAKCDEVNDSISQPVHETGLCKNLLQEYAQKMNYAIPLYLCQKNESPGRGTL- 134
Query: 118 VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS 164
F VE+ GI + G AK KK+AE AA A +++ A E++ +S
Sbjct: 135 -FKCTVEIGGIHYIGASAKTKKEAEIKAARTALLAIQLSASESSHNS 180
>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 425
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 5/168 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
AEVAL + P+ A I + ETG+ KNLLQE AQ++ +P Y +S G P
Sbjct: 93 AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPF 149
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
+ + G A+ KK AE AA A +++ ++ +A+ +++
Sbjct: 150 ICTVEIWWEYKYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATK 197
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 73 PSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG 132
P+ + A ++ V+K+ LQE AQ+ G P+Y T + G H PVF V + ++
Sbjct: 19 PNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDS 78
Query: 133 EPA-KNKKQAEKNAAMAAWTSL 153
P N+K AE++AA A +
Sbjct: 79 LPGFFNRKAAEQSAAEVALMEI 100
>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
Length = 292
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%)
Query: 65 LSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVE 124
+ S GPS + + D+ GVYKNLLQE+A++ G LP Y+T +SG+ H+P F VE
Sbjct: 200 MYSFESIGPSHNCRFKSKDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVE 259
Query: 125 LAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
+ G F G+ AK KK AE NAA AA+T LK+
Sbjct: 260 IEGETFVGQKAKTKKLAEMNAAKAAYTHLKE 290
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M K +LQEL R +N P Y+ ++GP H P F ATV+ G F + H + ++A+ +A
Sbjct: 10 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNA 69
Query: 61 AEVALSSLS 69
A +A+ L+
Sbjct: 70 AGLAIQYLT 78
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YKN LQE+A++ + LP Y+ + G H P F +TV GE F T + AE +A
Sbjct: 222 VYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQK-AKTKKLAEMNA 280
Query: 61 AEVALSSLSHR 71
A+ A + L R
Sbjct: 281 AKAAYTHLKER 291
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF-TGEPAKNKKQAE 142
E + K LQE+ R P+Y+T + G H P F V + G++F T PA++ K+A+
Sbjct: 7 EREMNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQ 66
Query: 143 KNAAMAAWTSL 153
NAA A L
Sbjct: 67 SNAAGLAIQYL 77
>gi|357443947|ref|XP_003592251.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462133|ref|XP_003601348.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481299|gb|AES62502.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490396|gb|AES71599.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 443
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 14/209 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+ K Q Q A ++ + P +T EGP R+ ATV +G+ F+SP T ++AE +A
Sbjct: 145 LNKLQHQNYASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAA 204
Query: 61 AEV-----ALSSLSHR------GPSPSLAAR-ILDETGVYKNLLQEIAQRVGAPLPQYTT 108
++ A S+L+ + P +L R + +ET K+LLQE+ QR +P Y +
Sbjct: 205 LQIVDMFQARSALAFKPCQTFEKPRSALNNRHMTNETCASKSLLQELTQRRYCSIPTYKS 264
Query: 109 IRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPE 168
R+G H+P F VE+ G+ F G+ + +KK+AE +AA A+ +LK ++ S
Sbjct: 265 TRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKIAYKALKDGGLHMYAAFSSSI 324
Query: 169 TNDELEQITIARALLNYRLKEKMAMASTL 197
++ EQ T ++ R K+K+ + L
Sbjct: 325 KKNQAEQSTDESDIV--RSKQKLILEDEL 351
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHS 59
MYK++LQE R ++LP Y+ I +GP H P FK +V NG F S + ++A +
Sbjct: 33 MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 92
Query: 60 AAEVALSSLSH 70
AA AL + S+
Sbjct: 93 AAMKALLNFSY 103
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFT-GEPAKNKKQAEKN 144
+YK+ LQE R LP+Y++I G H P F G V + G+ FT + + K+A
Sbjct: 33 MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 92
Query: 145 AAMAA 149
AAM A
Sbjct: 93 AAMKA 97
>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
Length = 484
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 71/156 (45%), Gaps = 46/156 (29%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+ LQ A+ +LP+Y REGP HAP FKAT
Sbjct: 161 YKSHLQNYARWKNCDLPTYYNTREGPSHAPCFKAT------------------------- 195
Query: 62 EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
D++G YKN LQE+AQR +P Y I+SG H+P F
Sbjct: 196 ---------------------DDSGFYKNALQELAQREDLSMPVYKIIKSGALHMPTFFS 234
Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157
VE+ G F G+ K+KK+AE +A AA+T L + A
Sbjct: 235 YVEIEGEKFYGKAGKSKKEAELKSARAAYTVLMERA 270
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M K +LQE+ + + LP Y+ +++GPDH P FKA+V NG F S C + + A + A
Sbjct: 1 MDKTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDA 60
Query: 61 AEVAL 65
A++A
Sbjct: 61 AKMAF 65
>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
Length = 298
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 112/253 (44%), Gaps = 27/253 (10%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KN+LQ A+R+ P Y EG H P+F+ TV G+ F S ++AE A
Sbjct: 47 MHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQDA 106
Query: 61 AEVALSSLSHRGPSP-SLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
A +A LS G A ++D+ V+ K++L E A + P Y+ + L +
Sbjct: 107 ARIAYEILSAVGEDDIKEAFGLIDQDAVFCKSILNEFAVKTKTTWPSYSLVYI-EKPLTL 165
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITI 178
F IV G ++TGE A+NKK AE+NAA A S+ LAK T
Sbjct: 166 FAAIVVFDGNSYTGESARNKKDAEQNAARAVIKSI--LAKHN----------------TC 207
Query: 179 ARALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASR 238
++ + + A+ S+ SP F P+Q TRP S + P+ + AS
Sbjct: 208 MVGIVRSKKQLITAVKSSGSSPATFT---PIQFTRPVS-HAAFGGPDHVAPML--QNASS 261
Query: 239 HRPASSGANEKPA 251
G N PA
Sbjct: 262 SLAVQGGTNAVPA 274
>gi|359481028|ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
Length = 495
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 52/74 (70%)
Query: 82 LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQA 141
D+ GVYKNLLQE+A++ G LP Y+T +SG+ H+P F VE+ G F G+ AK KK A
Sbjct: 233 FDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLA 292
Query: 142 EKNAAMAAWTSLKQ 155
E NAA AA+T LK+
Sbjct: 293 EMNAAKAAYTHLKE 306
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YKN LQE+A++ + LP Y+ + G H P F +TV GE F T + AE +A
Sbjct: 238 VYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVG-QKAKTKKLAEMNA 296
Query: 61 AEVAL-------SSLSHRGPSPS 76
A+ A S+L+H+ SPS
Sbjct: 297 AKAAYTHLKERRSNLNHKSLSPS 319
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M K +LQEL R +N P Y+ ++GP H P F ATV+ G F + H + ++A+ +A
Sbjct: 10 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 69
Query: 61 AEVALSSLSHRGPSP 75
A +A+ L+ P P
Sbjct: 70 AGLAIQYLTDPKPPP 84
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF-TGEPAKNKKQAE 142
E + K LQE+ R P+Y+T + G H P F V + G++F T PA++ K+A+
Sbjct: 7 EREMNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQ 66
Query: 143 KNAAMAA 149
NAA A
Sbjct: 67 SNAAGLA 73
>gi|414888358|tpg|DAA64372.1| TPA: hypothetical protein ZEAMMB73_304518 [Zea mays]
Length = 246
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 75/154 (48%), Gaps = 30/154 (19%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+QLQ AQ+ LPSY IR G AP FK+ V +G+ FESP YC T+++AE AA
Sbjct: 93 YKSQLQIYAQKRGKLLPSYRLIRVGSLGAPLFKSEVTIDGQTFESPEYCHTIKEAETVAA 152
Query: 62 EVALSSL-SHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
+VAL SL P+ L VG + Y+ F
Sbjct: 153 KVALMSLPQEANPTQQLL--------------------VGLDVSNYS---------AGFV 183
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
VE+ G+ F G+ KKQAE NAA +A+ LK
Sbjct: 184 STVEIQGVTFHGKRGNTKKQAEMNAAKSAFEHLK 217
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 80/163 (49%), Gaps = 6/163 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCS-TLRQAEHS 59
MYK++LQEL Q+ + Y REGP HAP F ATV NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWASSLYEPTREGPAHAPLFHATVIVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALSSL---SHRGPSPSLAARILDETGV-YKNLLQEIAQRVGAPLPQYTTIRSGLGH 115
A A +L +P+ A ET + YK+ LQ AQ+ G LP Y IR G
Sbjct: 61 TAMAAFDNLIPLPAVALAPAAPAPPPSETQLPYKSQLQIYAQKRGKLLPSYRLIRVGSLG 120
Query: 116 LPVFTGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLA 157
P+F V + G F E K+AE AA A SL Q A
Sbjct: 121 APLFKSEVTIDGQTFESPEYCHTIKEAETVAAKVALMSLPQEA 163
>gi|357443935|ref|XP_003592245.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462121|ref|XP_003601342.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481293|gb|AES62496.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490390|gb|AES71593.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 424
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 9/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+ K LQ A+++ + P +T E +KATV + + FESP + +++++AE +A
Sbjct: 122 LSKKHLQNYARKNNLDPPVFTIKTE----RLHYKATVVIDEKSFESPTFFNSIKEAEQAA 177
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A++AL L S L + DE+ K+LL E+ QR G P YTTI SG H+ +
Sbjct: 178 AKIALRELP---ISVDLFQK--DESCPSKSLLLELTQREGYSKPTYTTIESGSLHMRTYF 232
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE+ G+ F G+ +++KKQA+ +AA A+ +LK+
Sbjct: 233 STVEVEGLKFHGKASRSKKQADIDAAKIAYIALKE 267
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+K +LQ+L + ++LP YT +GP H P F A+V+ NG F S ++ ++A++ A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGV 87
A A + + P A R++ G
Sbjct: 61 AMKAFRNFT--SPLSEFAIRLIRRDGF 85
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNK-KQAEKNA 145
++K LQ++ + LP+YT G H P F V + G+ F A N K+A+ A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 146 AMAAWTSL 153
AM A+ +
Sbjct: 61 AMKAFRNF 68
>gi|357141254|ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium
distachyon]
Length = 281
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 6/158 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YKN+LQELAQR+ LP Y ++G H P F++TV G+ F S ++ AE AA
Sbjct: 30 YKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAEQDAA 89
Query: 62 EVA----LSSLSHRGPSPSLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTIR-SGLGH 115
VA ++ + + ++D+ ++ K++L E A + A P+Y+ R G+
Sbjct: 90 RVAYEILVAKIMDADADVTDILGLIDQDVLFCKSILNEFAVKTKATQPKYSVDRPQGVSP 149
Query: 116 LPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
+ +F V G +TGE A +KK AE+ AA AA S+
Sbjct: 150 ISLFVSSVVFDGKTYTGEAAVSKKDAEQKAARAAVKSI 187
>gi|414871036|tpg|DAA49593.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 325
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 89/145 (61%), Gaps = 6/145 (4%)
Query: 202 PFARKFPVQNTR-PTSPQPPLATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSEG 260
PF +KFP+Q R P+ Q ++ SKILPLF PK+ SR RP S + + +Q +
Sbjct: 11 PFPKKFPMQPERKPSFGQSSQSSYSKILPLFRPKSNSRSRPESPASTDGASQMPGRAMDI 70
Query: 261 RVVRPQ-KFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSAPPHPPPSA----LPP 315
P+ +FPAA AAPYVP+ +R C +AP VT+RT VP FSAPP PPPSA LPP
Sbjct: 71 HTPSPRSRFPAAEAAPYVPVGHFRMPCHSMAPSVTIRTAVPVFSAPPLPPPSARPQQLPP 130
Query: 316 QMMRAPAVRIAPSVTVRQAVPVYAA 340
M P +R+A V +R A P++A+
Sbjct: 131 LMSHPPPIRMASPVRMRPASPMFAS 155
>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays]
gi|194688536|gb|ACF78352.1| unknown [Zea mays]
gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 323
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 104/221 (47%), Gaps = 28/221 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KN+LQ A+R+ P Y EG H P+F TV + F S S ++AE A
Sbjct: 58 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 117
Query: 61 AEVALSSLSHRGPSP-SLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTIRSGLGH-LP 117
A VA L+ S A ++D+ V+ K++L E A + LP Y+ + L L
Sbjct: 118 ARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT 177
Query: 118 VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQIT 177
+F IV G A+ GE A NKK AE+NAA S+ LAK +
Sbjct: 178 LFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSI--LAKHDTC------------MVR 223
Query: 178 IARALLNYRLKEKM--AMASTLDSPIPFARKFPVQNTRPTS 216
I R+ K+++ A+ S+ ++P F P+Q TRP S
Sbjct: 224 IVRS------KKQLITAVRSSGNTPATFT---PIQFTRPVS 255
>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
gi|414870583|tpg|DAA49140.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
gi|414870584|tpg|DAA49141.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 266
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 104/221 (47%), Gaps = 28/221 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KN+LQ A+R+ P Y EG H P+F TV + F S S ++AE A
Sbjct: 1 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 60
Query: 61 AEVALSSLSHRGPSP-SLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTIRSGLGH-LP 117
A VA L+ S A ++D+ V+ K++L E A + LP Y+ + L L
Sbjct: 61 ARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT 120
Query: 118 VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQIT 177
+F IV G A+ GE A NKK AE+NAA S+ LAK +
Sbjct: 121 LFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSI--LAKHDTC------------MVR 166
Query: 178 IARALLNYRLKEKM--AMASTLDSPIPFARKFPVQNTRPTS 216
I R+ K+++ A+ S+ ++P F P+Q TRP S
Sbjct: 167 IVRS------KKQLITAVRSSGNTPATFT---PIQFTRPVS 198
>gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|75225116|sp|Q6YW64.1|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4
gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group]
gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|387538563|gb|AFJ79550.1| double stranded RNA binding protein 1-4 [Oryza sativa Indica Group]
Length = 312
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 5/156 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK++LQE Q++ LP Y +G H +FK+TV +GE F S ++ AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 62 EVALSSLSHRGPSPSLAA---RILDETGVY-KNLLQEIAQRVGAPLPQYTTIRSGLGHLP 117
+VA +L R + + ++D+ V+ K++L E + P+Y+ ++ G +
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTE-GSVT 157
Query: 118 VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
+ V AG +TG A+NKK AE+ AA AA SL
Sbjct: 158 PYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group]
Length = 310
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 5/156 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK++LQE Q++ LP Y +G H +FK+TV +GE F S ++ AE AA
Sbjct: 37 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 96
Query: 62 EVALSSLSHRGPSPSLAA---RILDETGVY-KNLLQEIAQRVGAPLPQYTTIRSGLGHLP 117
+VA +L R + + ++D+ V+ K++L E + P+Y+ ++ G +
Sbjct: 97 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTE-GSVT 155
Query: 118 VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
+ V AG +TG A+NKK AE+ AA AA SL
Sbjct: 156 PYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 191
>gi|449464150|ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]
Length = 385
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YKN L E Q++ +P Y I EG P++++TV + + SP+ R AE A
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A VA +S + + + ++ + K++L E ++G P YTT + G + F
Sbjct: 137 ARVAFEYISKKTKDDAFLL-LREDLMLCKSILSEYTDKMGLERPIYTT-KHNQGSVAFFQ 194
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157
+ G+ +T + + KK+AE+ AA AA SL + A
Sbjct: 195 STLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDA 231
>gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 280
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 81 ILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQ 140
++DE YKNLLQE+AQ+ G LP Y+T+ G H P F VE+ G FTG+ + KKQ
Sbjct: 1 MIDEFA-YKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQTRTKKQ 59
Query: 141 AEKNAAMAAWTSLKQ 155
AE NAA A+ +LKQ
Sbjct: 60 AEFNAAKVAYKALKQ 74
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YKN LQELAQ+ + LPSY+ + G H P F +TV GE F + T +QAE +AA
Sbjct: 7 YKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFF-TGQQTRTKKQAEFNAA 65
Query: 62 EVALSSLSHRG 72
+VA +L R
Sbjct: 66 KVAYKALKQRN 76
>gi|449502333|ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]
Length = 385
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YKN L E Q++ +P Y I EG P++++TV + + SP+ R AE A
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A VA +S + + + ++ + K++L E ++G P YTT + G + F
Sbjct: 137 ARVAFEYISKKTKDDAFLL-LREDLMLCKSILSEYTDKMGLERPIYTT-KHNQGSVAFFQ 194
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157
+ G+ +T + + KK+AE+ AA AA SL + A
Sbjct: 195 STLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDA 231
>gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
Length = 198
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K QL AQ+ P Y I+EGP HAPRF A V +G+ F P + +AA
Sbjct: 36 FKTQLSVYAQKLSKVPPLYKHIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 95
Query: 62 EVALSSLS-----HRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHL 116
L PSL+ YKN +QEIAQ+ G LP Y T+ + +
Sbjct: 96 AEVALDLLPPIPPQEYTIPSLS---------YKNFIQEIAQKEGISLPVYNTVPTNKENS 146
Query: 117 PVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
+ V++ G F GEP +KKQAE NAA A+ L
Sbjct: 147 TAYKSSVQIKGEIFEGEPGTSKKQAEMNAAKIAYHHL 183
>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
Length = 403
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 19/160 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFES-PHYCSTLRQAEHS 59
++K++LQE AQ+ P Y ++EGP H F++TV +G + S P + +
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFN------RK 68
Query: 60 AAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPV 118
AAE++ ++ + ETG+ KNLLQE AQ++ +P Y + LG +
Sbjct: 69 AAELS-----------QCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 117
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
FT VE+ GI +TG + KK AE +A A +++ K
Sbjct: 118 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTK 157
>gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis]
gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis]
Length = 162
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK +LQEL + ++LP Y+ + G DH P F ATV NG F S + + A+++A
Sbjct: 1 MYKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A++A S P + + YKNLLQ AQ+ G PLP Y+ R G H +F
Sbjct: 61 AKLAFDHFSSVSLPPDVQQHL------YKNLLQSYAQKRGLPLPMYSCERQGPPHASLFK 114
Query: 121 GIVELAGIAF 130
V + G ++
Sbjct: 115 CKVTIDGKSY 124
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YKN LQ AQ+ LP Y+C R+GP HA FK V +G+ +E + T+ +AEH+A
Sbjct: 81 LYKNLLQSYAQKRGLPLPMYSCERQGPPHASLFKCKVTIDGKSYECLDFFPTVSKAEHAA 140
Query: 61 AEVALSSLSHRG 72
A+ AL+SL+ G
Sbjct: 141 AKAALTSLAPDG 152
>gi|357443939|ref|XP_003592247.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
gi|355481295|gb|AES62498.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
Length = 257
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 27/154 (17%)
Query: 7 QELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALS 66
Q A+++ + P +T EGP H R+KA V +G+ FESP +T+++AE +AA+ +
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF-VG 171
Query: 67 SLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELA 126
P PS K+LLQE+++R G P Y T ++
Sbjct: 172 MFQKDEPCPS------------KSLLQELSEREGFSKPTYKT--------------TQIE 205
Query: 127 GIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKET 160
GI F G+ +K+K +AE++AA A+ +LK+ T
Sbjct: 206 GIGFHGKASKSKNKAEEDAAKIAYITLKECGSHT 239
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHS 59
M+K++LQEL R ++LP Y+ +GP H P FK +V NG F S ++ +A++
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 60 AAEVALSSLS 69
AA A + +
Sbjct: 61 AAMKAFRNFT 70
>gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
Length = 243
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K QL AQ+ P Y I+EGP HAPRF A V +G+ F P + +AA
Sbjct: 81 FKTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 140
Query: 62 EVALSSLS-----HRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHL 116
L PSL+ YKN +QEIAQ+ G LP Y T+ + +
Sbjct: 141 AEVALDLLPPIPPQESTIPSLS---------YKNFIQEIAQKEGILLPVYNTVPTNKEYS 191
Query: 117 PVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156
+ V++ F GEP +KKQAE NAA A+ L L
Sbjct: 192 TAYKSSVQIKCEIFEGEPRTSKKQAEMNAAKIAYHHLALL 231
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK++L L + P + EGP H+P F ATV N + F C+ + S
Sbjct: 1 MYKSELHALCSKKHCPKPEFVHTCEGPVHSPVFTATVTLNEKKF-----CAG--EGTPSK 53
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
EV + S + +++ + +K L AQ++G P Y I+ G H P F
Sbjct: 54 KEVDNLAARAALLSLADSSKPFESKTDFKTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFN 113
Query: 121 GIVELAGIAF 130
V + G F
Sbjct: 114 AEVTIDGQTF 123
>gi|414870580|tpg|DAA49137.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 334
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 24/211 (11%)
Query: 9 LAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL 68
A+R+ P Y EG H P+F TV + F S S ++AE AA VA L
Sbjct: 77 FAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEIL 136
Query: 69 SHRGPSP-SLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTIRSGLGH-LPVFTGIVEL 125
+ S A ++D+ V+ K++L E A + LP Y+ + L L +F IV
Sbjct: 137 TTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAIVVF 196
Query: 126 AGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIARALLNY 185
G A+ GE A NKK AE+NAA S+ LAK + I R+
Sbjct: 197 DGNAYHGESAPNKKDAEQNAARVVIKSI--LAKHDTC------------MVRIVRS---- 238
Query: 186 RLKEKMAMASTLDSPIPFARKFPVQNTRPTS 216
+ + A+ S+ ++P F P+Q TRP S
Sbjct: 239 KKQLITAVRSSGNTPATFT---PIQFTRPVS 266
>gi|357492171|ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
gi|355517709|gb|AES99332.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
Length = 357
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+KN L + A +S P + EG AP ++++V +G +F S + AE
Sbjct: 27 MFKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLTFFHRKAAEQEV 86
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
A AL L+ + A I+ E + K +L E A ++ LP Y ++ +P F
Sbjct: 87 ARFALEYLTKKVKDE--AYSIMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYK-EVIPYF 143
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
++L G ++TG+ A+ KK A + AA AA S+
Sbjct: 144 VCTLDLNGTSYTGDAARRKKDAVELAARAAILSI 177
>gi|449489595|ref|XP_004158359.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus]
Length = 307
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
M+K +LQEL R + LP Y+ +++G DH PRF+ATV +G+ F SP + +QA++ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 61 AEVALSSLS 69
A++A S
Sbjct: 61 AKLAFDFFS 69
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG-EPAKNKKQAEKNA 145
++K LQE+ R LP+Y+ ++ G H P F V + G F P+K+ KQA+ +A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 146 AMAAW 150
A A+
Sbjct: 61 AKLAF 65
>gi|358348579|ref|XP_003638322.1| Ribonuclease, partial [Medicago truncatula]
gi|355504257|gb|AES85460.1| Ribonuclease, partial [Medicago truncatula]
Length = 160
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEK 143
ET K+LLQE+ QR +P Y + R+G H+P F VE+ G+ F G+ + +KK+AE
Sbjct: 1 ETCASKSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEY 60
Query: 144 NAAMAAWTSLKQLAKETASSSSEPETNDELEQITIARALLNYRLKEKMAMASTL 197
+AA A+ +LK ++ S ++ EQ T ++ R K+K+ + L
Sbjct: 61 DAAKIAYKALKDGGLHMYAAFSSSIKKNQAEQSTDESDIV--RSKQKLILEDEL 112
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAE 62
K+ LQEL QR ++P+Y R GP H P F +TV G F S+ ++AE+ AA+
Sbjct: 6 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKA-SSSKKEAEYDAAK 64
Query: 63 VALSSLSHRG 72
+A +L G
Sbjct: 65 IAYKALKDGG 74
>gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa]
gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa]
Length = 61
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 95 IAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
+AQR G LP Y T +SG H P F VE+ G+ FTG+ A+ KKQAE +AA A+T+ +
Sbjct: 1 MAQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAKTAYTARR 60
Query: 155 Q 155
+
Sbjct: 61 R 61
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 LAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSS 67
+AQR LP+Y + G HAP F +TV +G IF T +QAE SAA+ A ++
Sbjct: 1 MAQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVIFTGKE-ARTKKQAEMSAAKTAYTA 58
>gi|449672502|ref|XP_002169974.2| PREDICTED: uncharacterized protein LOC100206939 [Hydra
magnipapillata]
Length = 437
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 42/179 (23%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YKN LQE Q+S PSY + GP + V FN + +++AE++AA
Sbjct: 144 YKNSLQEYCQKSRLPTPSYKVVLSGPG---MYIGNVTFNNTLVHGTVAYRIIKEAENNAA 200
Query: 62 EVALSSLSH-------------------------RGPSPSLAARILDETGVYKNLLQEIA 96
AL L + + P P+L + +K+ L E+A
Sbjct: 201 FEALKQLGYLHENSIYIPIAGVKRSNDTQDPWYSKKPKPALCSS-------FKSKLNELA 253
Query: 97 QRVGAPLPQYTTIRSGLGHLP--VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
Q+ P Y TI S G+L VF G E G++ P KK AE+NAA A+ L
Sbjct: 254 QKRHLGTPTYQTIYSAGGYLSTVVFNG-REFKGMS----PCMKKKDAEQNAAFVAYNVL 307
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 82 LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQA 141
+ ETG+ KNLLQE AQ++ +P Y +S G P F VE+ GI + G A+ KK A
Sbjct: 470 VQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDA 528
Query: 142 EKNAAMAAWTSLKQLAKETASSSSE 166
E AA A +++ ++ +A+ +++
Sbjct: 529 EIKAARTALLAIQGQSEGSANGATK 553
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALSSL 68
AEVAL +
Sbjct: 93 AEVALMEI 100
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 73 PSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG 132
P+ + A ++ V+K+ LQE AQ+ G P+Y T + G H PVF V + ++
Sbjct: 19 PNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDS 78
Query: 133 EPA-KNKKQAEKNAAMAAWTSL 153
P N+K AE++AA A +
Sbjct: 79 LPGFFNRKAAEQSAAEVALMEI 100
>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
Length = 830
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 82 LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQA 141
+ ETG+ KNLLQE AQ++ +P Y +S G P F VE+ GI + G A+ KK A
Sbjct: 470 VQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDA 528
Query: 142 EKNAAMAAWTSLKQLAKETASSSSE 166
E AA A +++ ++ +A+ +++
Sbjct: 529 EIKAARTALLAIQGQSEGSANGATK 553
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALSSL 68
AEVAL +
Sbjct: 93 AEVALMEI 100
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 73 PSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG 132
P+ + A ++ V+K+ LQE AQ+ G P+Y T + G H PVF V + ++
Sbjct: 19 PNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDS 78
Query: 133 EPA-KNKKQAEKNAAMAAWTSL 153
P N+K AE++AA A +
Sbjct: 79 LPGFFNRKAAEQSAAEVALMEI 100
>gi|156373860|ref|XP_001629528.1| predicted protein [Nematostella vectensis]
gi|156216530|gb|EDO37465.1| predicted protein [Nematostella vectensis]
Length = 949
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 76/180 (42%), Gaps = 36/180 (20%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YKN LQE AQ S LPSYT F A VNF G ++S ST + AE +AA
Sbjct: 141 YKNILQEFAQGSAKLLPSYTVDTTNSG----FIAEVNFEGVRYKSKIAHSTKKAAEQNAA 196
Query: 62 EVALSSLSHRGPSPSLAA------RIL-------DETGV---------------YKNLLQ 93
E AL +L SPS +L D TG YK+ LQ
Sbjct: 197 ESALQALGLVRDSPSETVVSEKFESVLKNTPAKNDFTGCSKDQLYLSSPAINISYKSYLQ 256
Query: 94 EIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
E + G P Y T H +V+ G + TG+PA KK +E+ AA A +L
Sbjct: 257 EHVVQRGWRGPSYMTTY----HQGGAQTVVQFCGKSLTGKPASTKKLSEQLAAREALVNL 312
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLG---HLPVFTGIVELAGIAFTGEPAKNKKQAEKN 144
+K+LLQE Q++ P Y T + G +L F V G FTG +K AE++
Sbjct: 20 FKSLLQEYCQKMKIDYPSYRTSQCDDGTSKYLGHFVSNVLAVGQNFTGGYCSKRKAAEQD 79
Query: 145 AAMAAWTSLKQ 155
AA A +++Q
Sbjct: 80 AAKQALKNIQQ 90
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEK 143
ETG+ KNLLQE AQ++ +P Y +S G P F VE+ GI + G A+ KK AE
Sbjct: 1701 ETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEI 1759
Query: 144 NAAMAAWTSLKQLAKETASSSSE 166
AA A +++ ++ +A+ +++
Sbjct: 1760 KAARTALLAIQGQSEGSANGATK 1782
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 1268 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 1327
Query: 61 AEVALSSL 68
AEVAL +
Sbjct: 1328 AEVALMEI 1335
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AE+ L R + + A ++ V+K+ LQE AQ+ G P+Y T + G H PVF
Sbjct: 1246 AEIVLG----RNSNEDILAVGVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFK 1301
Query: 121 GIVELAGIAFTGEPA-KNKKQAEKNAAMAA 149
V + ++ P N+K AE++AA A
Sbjct: 1302 STVVINNTSYDSLPGFFNRKAAEQSAAEVA 1331
>gi|147779552|emb|CAN61162.1| hypothetical protein VITISV_001392 [Vitis vinifera]
Length = 458
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 24/27 (88%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPD 28
YKNQLQELAQRSCFNLPSYTCIR D
Sbjct: 99 YKNQLQELAQRSCFNLPSYTCIRRPKD 125
>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
Length = 787
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N + S S + AE SA
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQR 98
AEVAL + P+ A I + ETG+ Q++ QR
Sbjct: 95 AEVALMEIVKSIPAN---ANIPAVQETGLCNIGSQQLNQR 131
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEK 143
ETG+ KNLLQE AQ++ +P Y + G P F VE+ GI + G A+ KK AE
Sbjct: 467 ETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FICTVEIGGIQYIGAAARTKKDAEI 525
Query: 144 NAAMAAWTSLKQLAKETASSSSE 166
AA A +++ ++ +A+ +++
Sbjct: 526 KAARTALLAIQGQSEGSANGATK 548
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNA 145
V+K+ LQE AQ+ G P+Y T + G H PVF V + ++ P N+K AE++A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 146 AMAAWTSL 153
A A +
Sbjct: 95 AEVALMEI 102
>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
Length = 787
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N + S S + AE SA
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQR 98
AEVAL + P+ A I + ETG+ Q++ QR
Sbjct: 95 AEVALMEIVKSIPAN---ANIPAVQETGLCNIGSQQLNQR 131
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEK 143
ETG+ KNLLQE AQ++ +P Y + G P F VE+ GI + G A+ KK AE
Sbjct: 467 ETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEI 525
Query: 144 NAAMAAWTSLKQLAKETASSSSE 166
AA A +++ ++ +A+ +++
Sbjct: 526 KAARTALLAIQGQSEGSANGATK 548
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNA 145
V+K+ LQE AQ+ G P+Y T + G H PVF V + ++ P N+K AE++A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 146 AMAAWTSL 153
A A +
Sbjct: 95 AEVALMEI 102
>gi|443705473|gb|ELU02009.1| hypothetical protein CAPTEDRAFT_221252 [Capitella teleta]
Length = 428
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 82/185 (44%), Gaps = 27/185 (14%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKAT-VNFNGEIFESPHYCSTLRQAEHSA 60
+KN+LQE Q+ +P Y I PD A K + V NGE FES +++E A
Sbjct: 50 FKNKLQEYCQQKKIAIPKYELI---PDPANNDKKSAVIVNGERFESVGAYPKKKESEMDA 106
Query: 61 AEVALSSL--SHRGPSPSLAARI-LDETGVYKNL----------------LQEIAQRVGA 101
A VAL +L + +P AA + T V KN L E+ QR
Sbjct: 107 ACVALKALQTAEAQKAPKYAAEQPVAITAVAKNCKPEKEKESTEENMIGQLNEVCQRNSV 166
Query: 102 PLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETA 161
P PQY G F+ V+ + E +NKK AEK A AA T L + KE++
Sbjct: 167 PAPQYNERGDKSGE---FSCDVKFKMVVVLNENFENKKCAEKAVAKAALTKL-GIEKESS 222
Query: 162 SSSSE 166
S +E
Sbjct: 223 ESKNE 227
>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 53.1 bits (126), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 82 LDETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQ 140
+ ETG+ KNLLQE AQ++ +P Y + LG + FT VE+ GI +TG + KK
Sbjct: 3 MHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKD 62
Query: 141 AEKNAAMAAWTSLK 154
AE +A A +++
Sbjct: 63 AEISAGRTALLAIQ 76
>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
Length = 474
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVAL 65
AEVAL
Sbjct: 93 AEVAL 97
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 73 PSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG 132
P+ + A ++ V+K+ LQE AQ+ G P+Y T + G H PVF V + ++
Sbjct: 19 PNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDS 78
Query: 133 EPA-KNKKQAEKNAAMAAWTSL 153
P N+K AE++AA A +
Sbjct: 79 LPGFFNRKAAEQSAAEVALMEI 100
>gi|386842771|ref|YP_006247829.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103072|gb|AEY91956.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796063|gb|AGF66112.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 274
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTAIEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWTSLKQLAKETASSSSEP--ETNDE 172
+AW +++ A E A + EP ET DE
Sbjct: 230 SAWRAIRAAADERAKVAKEPIKETADE 256
>gi|357501287|ref|XP_003620932.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
gi|355495947|gb|AES77150.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
Length = 75
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MY N+LQEL Q++ + LP Y EGP H P F +TV F SP STL+ ++
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 61 AEVALSSL 68
A VA
Sbjct: 61 AMVAFHHF 68
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG-EPAKNKKQAEKNA 145
+Y N LQE+ Q+ PLP+Y T G H P+F+ V + I+FT EPA K +++
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 146 AMAAWTSLKQ 155
AM A+ Q
Sbjct: 61 AMVAFHHFLQ 70
>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
Length = 118
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFES-PHYCSTLRQAEHS 59
++K++LQE AQ+ Y ++EGP H P FK+TV N +ES P + S + AE S
Sbjct: 32 VFKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSR-KAAEQS 90
Query: 60 AAEVALSSLS 69
AAEVAL ++
Sbjct: 91 AAEVALMEIA 100
>gi|357515751|ref|XP_003628164.1| DsRNA-binding protein [Medicago truncatula]
gi|355522186|gb|AET02640.1| DsRNA-binding protein [Medicago truncatula]
Length = 96
Score = 51.6 bits (122), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 104 PQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
P Y+T +SG H P+F+ VE+ G FTG+ AK+KK AE +AA A+ L Q
Sbjct: 41 PVYSTNKSGEAHKPIFSSQVEIKGEIFTGQEAKSKKHAEMSAAKVAYKFLDQ 92
>gi|255546785|ref|XP_002514451.1| ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223546447|gb|EEF47947.1| ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 1129
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPV--FTGIVELAGIAFTGEPAKNKKQAEKNAA 146
K+LLQ + R G P+Y T HL F +VE G+ F G+P KNK+ AE++AA
Sbjct: 1031 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAA 1085
Query: 147 M--AAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
+ AW + + + + S+P+ D + ++ R
Sbjct: 1086 IEALAWLTHTSDSSQEENEKSQPDVTDNMLKLLGKR 1121
>gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa]
gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa]
Length = 83
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 44/64 (68%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK++LQ+L+Q+ + +P+ +EG +H+P F ATV + +F +P S+ ++A+++A
Sbjct: 1 MYKSKLQQLSQQRGWEIPTSEVTKEGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAA 60
Query: 61 AEVA 64
A+ A
Sbjct: 61 AKQA 64
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK+QLQEL QR L Y ++E GP H+ F + V+ NGE + S ++AE A
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGTGKSK-KEAEQHA 230
Query: 61 AEVALSSLSHR 71
AE+AL +L ++
Sbjct: 231 AEIALKNLKNK 241
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
YK+ LQE+ QR G L +Y ++ G H F V L G K+KK+AE++AA
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGTGKSKKEAEQHAA 231
Query: 147 MAAWTSLK 154
A +LK
Sbjct: 232 EIALKNLK 239
>gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis]
gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K +LQE AQ+ P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 15 VFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSA 74
Query: 61 AEVALSSLS 69
EVAL L+
Sbjct: 75 VEVALMELA 83
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAK-NKKQAEKNA 145
V+K LQE AQ+ G P P Y TI+ G H P F V + I + P N+K AE++A
Sbjct: 15 VFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSA 74
Query: 146 AMAAWTSLKQLAKETASSSSEPETNDELEQ 175
A L +LAK E ND + Q
Sbjct: 75 VEVA---LMELAKCD-------EVNDCISQ 94
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKSFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
Length = 272
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 148 AAWTSLKQLAKETASSSSEPETND 171
+AW S++ A E A ++++ D
Sbjct: 241 SAWRSIRAAADERAKATADAVDAD 264
>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
gi|418472126|ref|ZP_13041896.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
gi|384872625|sp|Q9ZBQ7.2|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Antibiotic biosynthesis
protein B; Short=AbsB; AltName: Full=Ribonuclease III;
Short=RNase III
gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
gi|371547286|gb|EHN75676.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
Length = 276
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 148 AAWTSLKQLAKETASSSSEPETND 171
+AW S++ A E A ++++ D
Sbjct: 245 SAWRSIRAAADERAKATADAVDAD 268
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
Length = 287
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +G +P+Y +G HL FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGAGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAE 227
Query: 148 AAWTSLK 154
+AW +L
Sbjct: 228 SAWRTLN 234
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>gi|347549202|ref|YP_004855530.1| putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982273|emb|CBW86267.1| Putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 230
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
Length = 229
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
Length = 296
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +G +P+Y +G HL FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWTSLKQLAK 158
+AW L + A+
Sbjct: 228 SAWRELTEQAE 238
>gi|315502406|ref|YP_004081293.1| ribonuclease III [Micromonospora sp. L5]
gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
Length = 267
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +G +P+Y +G HL FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWTSL 153
+AW +L
Sbjct: 228 SAWRTL 233
>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
Length = 267
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +G +P+Y +G HL FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWTSL 153
+AW +L
Sbjct: 228 SAWRTL 233
>gi|386852253|ref|YP_006270266.1| ribonuclease III [Actinoplanes sp. SE50/110]
gi|359839757|gb|AEV88198.1| ribonuclease III [Actinoplanes sp. SE50/110]
Length = 245
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +G +P Y SG H FT V +AG+ + G ++KKQAE+ AA
Sbjct: 167 WKTSLQELTAALGLGVPDYVIEDSGPDHAKTFTAWVVVAGVRYGGSDGRSKKQAEQRAAA 226
Query: 148 AAWTSLKQLAKETASSSSEPE 168
AAW L + + A +PE
Sbjct: 227 AAWRMLTE--RSEADGDDKPE 245
>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 48.9 bits (115), Expect = 0.006, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 86 GVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKN 144
G+ KNLLQE AQ++ +P Y + LG + FT VE+ GI +TG + KK AE +
Sbjct: 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEIS 63
Query: 145 AAMAAWTSLK 154
A A +++
Sbjct: 64 AGRTALLAIQ 73
>gi|296081073|emb|CBI18267.3| unnamed protein product [Vitis vinifera]
Length = 1162
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPV--FTGIVELAGIAFTGEPAKNKKQAEKNAA 146
K+LLQ + R G P+Y T HL F +VE G+ F G+P KNK+ AE++AA
Sbjct: 1038 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAA 1092
Query: 147 MAAWTSLKQLAKETASSSSEPET 169
+ A L + + E E+
Sbjct: 1093 IEALAWLTHTSDNSQGEYGEDES 1115
>gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175]
Length = 147
Score = 48.9 bits (115), Expect = 0.006, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 78 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 136
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 137 AQFAINQLTHR 147
>gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group]
Length = 125
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK++LQE Q++ LP Y +G H +FK+TV +GE F S ++ AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 62 EVALSSLSHRGPSPSLAARILDETGVYKNLLQ 93
+VA +L R + + D+T V++ + Q
Sbjct: 99 KVAYDTLLERKETET------DDTDVFELIDQ 124
>gi|224161117|ref|XP_002338294.1| predicted protein [Populus trichocarpa]
gi|222871751|gb|EEF08882.1| predicted protein [Populus trichocarpa]
Length = 196
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK+ LQ + Q+ + LP+Y ++G DH+P F ATV N F SP S+ ++A+ A
Sbjct: 1 MYKSNLQAVCQQRGWELPTYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60
Query: 61 AEVALSSLS 69
A++A S
Sbjct: 61 AKLAYDHFS 69
>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y ++EGP H F++TV +G + S + AE SA
Sbjct: 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 61 AEVALSSLS 69
AEVAL L+
Sbjct: 64 AEVALRELA 72
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNA 145
V+K+ LQE AQ+ P P Y ++ G H +F V L G+ + P N+K AE++A
Sbjct: 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 146 AMAAWTSLKQLAK 158
A A L++LAK
Sbjct: 64 AEVA---LRELAK 73
>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y ++EGP H F++TV +G + S + AE SA
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77
Query: 61 AEVALSSLSHRGPSPSLAARILDETG 86
AEVAL L+ ++ + ETG
Sbjct: 78 AEVALRELAKSSELSQCVSQPVHETG 103
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNA 145
V+K+ LQE AQ+ P P Y ++ G H +F V L G+ + P N+K AE++A
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77
Query: 146 AMAAWTSLKQLAKET 160
A A L++LAK +
Sbjct: 78 AEVA---LRELAKSS 89
>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
Length = 265
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 176 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 235
Query: 148 AAWTSLKQLAKETASSSSE 166
+AW +++ A E A +E
Sbjct: 236 SAWRAIRAAADERAKEEAE 254
>gi|421739406|ref|ZP_16177716.1| ribonuclease III [Streptomyces sp. SM8]
gi|406692179|gb|EKC95890.1| ribonuclease III [Streptomyces sp. SM8]
Length = 260
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 148 AAWTSLKQLAKETASSSSE 166
+AW +++ A E A +E
Sbjct: 231 SAWRAIRAAADERAKEEAE 249
>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
Length = 273
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK+ LQ+ AQR C N P+Y + E GPDH+ FK + + G+ +++ + ++AE A
Sbjct: 197 YKSLLQQFAQRECGNTPTYHLLDEKGPDHSKCFKISASVGGKKYQAA-WGRNKKEAEQRA 255
Query: 61 AEVALSSL 68
A AL+ +
Sbjct: 256 ANNALAEI 263
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 42 EIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGA 101
++FES L E +A + + + GP LAA + G YK+LLQ+ AQR
Sbjct: 155 DVFESLIAAIYLDGGEQAARQFINNYI---GPEVELAAAG-ELGGNYKSLLQQFAQRECG 210
Query: 102 PLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
P Y + G H F + G + +NKK+AE+ AA A +K
Sbjct: 211 NTPTYHLLDEKGPDHSKCFKISASVGGKKYQAAWGRNKKEAEQRAANNALAEIK 264
>gi|359148735|ref|ZP_09181842.1| ribonuclease III [Streptomyces sp. S4]
Length = 260
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 148 AAWTSLKQLAKETASSSSE 166
+AW +++ A E A +E
Sbjct: 231 SAWRAIRAAADERAKEEAE 249
>gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
gi|81391047|sp|Q6AFJ4.1|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 237
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMA 148
K LQE A GA P YT I +G H F V++ G+ +KKQAE AA++
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 149 AWTSL 153
AWT+L
Sbjct: 223 AWTAL 227
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAE 62
K LQE A P YT I GPDH+ F ATV+ G + S S +QAE +AA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSK-KQAEMAAAL 221
Query: 63 VALSSLS-HRGPSP 75
A ++L+ HR +P
Sbjct: 222 SAWTALTNHRARTP 235
>gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Sphaerochaeta globus str. Buddy]
gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Sphaerochaeta globus str. Buddy]
Length = 248
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK LQE Q+ +PSYT +R+ GP+H F V+ NG++F P + +QAE A
Sbjct: 176 YKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNGQVF-GPASGANKKQAEQMA 234
Query: 61 AEVALSSL 68
A++A L
Sbjct: 235 AKLAYDQL 242
>gi|145361138|ref|NP_680142.2| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
gi|10178028|dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana]
gi|332003418|gb|AED90801.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
Length = 1161
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPV--FTGIVELAGIAFTGEPAKNKKQAEKNAA 146
K+LLQ + R G P+Y T HL F +VE G+ F G+P +NK AEK+AA
Sbjct: 1061 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAA 1115
Query: 147 M--AAW---TSLKQLAKETASSSSEPETNDELEQITIAR 180
+ AW TS + + S P+ D + ++ R
Sbjct: 1116 VEALAWLTHTSDNSTGQHNEDADSPPDVTDNMLKLLGGR 1154
>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
Length = 272
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWTSLKQLAKE 159
+AW S++ A E
Sbjct: 230 SAWRSIRAAADE 241
>gi|408529026|emb|CCK27200.1| Ribonuclease 3 [Streptomyces davawensis JCM 4913]
Length = 263
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWTSLKQLAKE 159
+AW S++ A E
Sbjct: 234 SAWRSIRAAADE 245
>gi|218187401|gb|EEC69828.1| hypothetical protein OsI_00149 [Oryza sativa Indica Group]
Length = 1680
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 89 KNLLQEIAQRVGAPLPQYTT--IRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
KN LQ + R G P Y T I++ L F VE G+ F G+P NKK AEK+AA
Sbjct: 1585 KNQLQTLLTRAGHDNPSYKTKQIKNSL-----FRSTVEFNGMQFVGQPCANKKLAEKDAA 1639
Query: 147 MAAWTSLKQLAKETASSSSEPETNDELEQI 176
A L L S S +P+ D + +
Sbjct: 1640 GEA---LNWLTGGAPSDSRDPQDMDHMSML 1666
>gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
Length = 286
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 184 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 243
Query: 148 AAWTSLKQ 155
+AW S+K
Sbjct: 244 SAWRSIKD 251
>gi|242032961|ref|XP_002463875.1| hypothetical protein SORBIDRAFT_01g008080 [Sorghum bicolor]
gi|241917729|gb|EER90873.1| hypothetical protein SORBIDRAFT_01g008080 [Sorghum bicolor]
Length = 1148
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 71 RGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV--FTGIVELAGI 128
R P + I+ + K+LLQ + R G P+Y T HL F +VE G+
Sbjct: 1027 RNPEDDSKSNIIKDGMNPKSLLQTLLMRAGHTPPKYKT-----KHLKTNEFRAMVEFKGM 1081
Query: 129 AFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDE 172
F G+P +NK+ AE++AA+ A L Q T+ + E +D+
Sbjct: 1082 QFVGKPKRNKQLAERDAAIEALGWLTQ----TSGVKPQDENDDD 1121
>gi|222617638|gb|EEE53770.1| hypothetical protein OsJ_00159 [Oryza sativa Japonica Group]
Length = 1700
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 89 KNLLQEIAQRVGAPLPQYTT--IRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
KN LQ + R G P Y T I++ L F VE G+ F G+P NKK AEK+AA
Sbjct: 1605 KNQLQTLLTRAGHDNPSYKTKQIKNSL-----FRSTVEFNGMQFVGQPCANKKLAEKDAA 1659
Query: 147 MAAWTSLKQLAKETASSSSEPETNDELEQI 176
A L L S S +P+ D + +
Sbjct: 1660 GEA---LNWLTGGAPSDSRDPQDMDHMSML 1686
>gi|455651571|gb|EMF30297.1| ribonuclease III [Streptomyces gancidicus BKS 13-15]
Length = 272
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWTSLK 154
+AW S+K
Sbjct: 230 SAWRSIK 236
>gi|358348435|ref|XP_003638252.1| ATP-dependent RNA helicase A-like protein, partial [Medicago
truncatula]
gi|355504187|gb|AES85390.1| ATP-dependent RNA helicase A-like protein, partial [Medicago
truncatula]
Length = 333
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPV--FTGIVELAGIAFTGEPAKNKKQAEKNAA 146
K+LLQ + R G P+Y T HL F +VE G+ F G+P +NK+ AE++AA
Sbjct: 234 KSLLQTLLMRAGHSAPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAA 288
Query: 147 MAAWTSLKQLAKETASSSSEPETN 170
+ A L S +++PE +
Sbjct: 289 IEALAWLTH-----TSDNAQPEDD 307
>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 256
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K LQEL +PSY GPDH F ATV G+ F + ++AE AA
Sbjct: 174 WKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAF-GVGVGRSKKEAEQKAA 232
Query: 62 EVALSSLS 69
A S+LS
Sbjct: 233 STAWSALS 240
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P Y +G H FT V + G AF ++KK+AE+ AA
Sbjct: 174 WKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAFGVGVGRSKKEAEQKAAS 233
Query: 148 AAWTSLKQLAK 158
AW++L + A+
Sbjct: 234 TAWSALSEAAQ 244
>gi|53791439|dbj|BAD52491.1| putative DEAD/H box polypeptide 36 protein [Oryza sativa Japonica
Group]
Length = 1063
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 89 KNLLQEIAQRVGAPLPQYTT--IRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
KN LQ + R G P Y T I++ L F VE G+ F G+P NKK AEK+AA
Sbjct: 968 KNQLQTLLTRAGHDNPSYKTKQIKNSL-----FRSTVEFNGMQFVGQPCANKKLAEKDAA 1022
Query: 147 MAAWTSLKQLAKETASSSSEPETNDELEQI 176
A L L S S +P+ D + +
Sbjct: 1023 GEA---LNWLTGGAPSDSRDPQDMDHMSML 1049
>gi|291241541|ref|XP_002740673.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
kowalevskii]
Length = 618
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 70/162 (43%), Gaps = 22/162 (13%)
Query: 24 REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL-----------SHRG 72
R GP HAP F V +G+ FE CS ++QA+H A+ AL + + G
Sbjct: 90 RSGPPHAPVFVMGVKVDGQYFEGKG-CS-IKQAKHIVAKQALKFVQSDVEIGGTVDAESG 147
Query: 73 PSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG 132
L+ ET + +A P+ T SG GH ++T V++ F G
Sbjct: 148 NGDQLSTTSESETLSQSDPTLLLAAYNPGPIIYDTLSESGNGHEKMYTMAVKVGDAVFQG 207
Query: 133 EPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELE 174
A NK Q + AA AA + L + SEP TN EL+
Sbjct: 208 TGA-NKHQGKMAAARAALSQL--------NVQSEPTTNHELQ 240
>gi|357501283|ref|XP_003620930.1| DsRNA-binding protein [Medicago truncatula]
gi|355495945|gb|AES77148.1| DsRNA-binding protein [Medicago truncatula]
Length = 105
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG-EPAKNKKQAEKNAAM 147
K LQE+ Q+ PLP+Y T G H P+F+ V + I+FT +PA K +++ AAM
Sbjct: 33 KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92
Query: 148 AAWTSLKQ 155
A+ Q
Sbjct: 93 VAFHHFLQ 100
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAE 62
K +LQEL Q++ + LP Y EGP H P F +TV F SP STL+ ++ AA
Sbjct: 33 KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92
Query: 63 VALSSL 68
VA
Sbjct: 93 VAFHHF 98
>gi|345849801|ref|ZP_08802808.1| ribonuclease III [Streptomyces zinciresistens K42]
gi|345638782|gb|EGX60282.1| ribonuclease III [Streptomyces zinciresistens K42]
Length = 260
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWTSLK 154
+AW S+K
Sbjct: 230 SAWLSIK 236
>gi|302807261|ref|XP_002985343.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
gi|300146806|gb|EFJ13473.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
Length = 1142
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKN 144
K +LQ + QR G +P Y T SG F V + G F GEPA++KKQAEKN
Sbjct: 1066 KGILQTLVQRAGFAVPTYQTRSSG----SQFISCVVVRGKKFIGEPAESKKQAEKN 1117
>gi|449435188|ref|XP_004135377.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1144
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPV--FTGIVELAGIAFTGEPAKNKKQAEKNAA 146
K+LLQ + R G P+Y T HL F +VE G+ F G+P KNK+ AE++AA
Sbjct: 1047 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAA 1101
Query: 147 MAAWTSLKQ 155
+ + L Q
Sbjct: 1102 IESLAWLTQ 1110
>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
Length = 1665
Score = 46.6 bits (109), Expect = 0.031, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKN 144
K +LQ + QR G +P Y T SG F V + G F GEPA++KKQAEKN
Sbjct: 949 KGILQTLVQRAGFAVPTYQTRSSG----SQFISCVVVRGKKFIGEPAESKKQAEKN 1000
>gi|449506389|ref|XP_004162736.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1144
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPV--FTGIVELAGIAFTGEPAKNKKQAEKNAA 146
K+LLQ + R G P+Y T HL F +VE G+ F G+P KNK+ AE++AA
Sbjct: 1047 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAA 1101
Query: 147 MAAWTSLKQ 155
+ + L Q
Sbjct: 1102 IESLAWLTQ 1110
>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
Length = 292
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEK 143
ETG+ KNLLQE AQ++ +P Y + G P F VE+ GI + G A+ KK AE
Sbjct: 89 ETGLCKNLLQEYAQKMNYAIPSYICTKQASG--P-FICSVEIGGILYIGAAARTKKGAEI 145
Query: 144 NAAMAAWTSLK 154
AA A +++
Sbjct: 146 KAARTALLAIQ 156
>gi|440683448|ref|YP_007158243.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
gi|428680567|gb|AFZ59333.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
Length = 395
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
K LLQ+ AQ+ G +P+YTTI+ +G H FT VE+ G K KK AEK AA
Sbjct: 327 KGLLQQYAQKNGFDIPEYTTIQETGTDHNKEFTVQVEIGGQICGQGKGKRKKDAEKQAAA 386
Query: 148 AAWTSLK 154
A L+
Sbjct: 387 NALEKLR 393
>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
Length = 272
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE G P Y G H VFT V + G +NKK AE AA
Sbjct: 176 WKTSLQEATAAAGLGAPTYVVEGEGPDHDKVFTATVLVDGRTLGAGTGRNKKSAEMIAAE 235
Query: 148 AAWTSLKQLAKETASSSSEPETNDELEQITI 178
AW SL+ A + A S+ DE + + +
Sbjct: 236 NAWVSLRDEAAKNAGSAGGDVVCDEADAVAV 266
>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
Length = 268
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 57 EHSAAEVALSSLSHR------GPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIR 110
EH E A L HR S SL A LD +K LQE+ +P+Y
Sbjct: 150 EHGLDEAA--KLVHRLFDSLIDKSASLGAG-LD----WKTSLQELTAEEELGVPEYHVAE 202
Query: 111 SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETN 170
SG H F V + G+ + ++KK+AE+ AA A W ++K+++ + S+ + +
Sbjct: 203 SGPDHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAAEATWHAIKEMSAKRKGGKSDGKDD 262
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K LQEL +P Y GPDH F+ATV G + S S ++AE AA
Sbjct: 180 WKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGEGRSK-KEAEQRAA 238
Query: 62 E 62
E
Sbjct: 239 E 239
>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
Length = 256
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 59 SAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
+A +V L + + + S++ R LD +K LQE+ + AP+P Y+ +G H
Sbjct: 151 TARDVILRLFAEKIDNASVSGRHLD----WKTTLQELCAELKAPMPVYSATATGPEHDQT 206
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
F+ + +AG++ NKK AE+ AA A +L++
Sbjct: 207 FSAVATVAGLSVGNGQGHNKKLAEQQAAQEACQTLRE 243
>gi|440696029|ref|ZP_20878532.1| ribonuclease III [Streptomyces turgidiscabies Car8]
gi|440281787|gb|ELP69332.1| ribonuclease III [Streptomyces turgidiscabies Car8]
Length = 280
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWTSLK 154
+AW S++
Sbjct: 234 SAWRSIR 240
>gi|357392059|ref|YP_004906900.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
Length = 269
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ VG +P+Y SG H FT +AG ++KK+AE+ AA
Sbjct: 182 WKTSLQELTAAVGLGVPEYVVTESGPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAAE 241
Query: 148 AAWTSLK 154
+AW ++K
Sbjct: 242 SAWRAIK 248
>gi|395771774|ref|ZP_10452289.1| ribonuclease III [Streptomyces acidiscabies 84-104]
Length = 263
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWTSLKQLAKE 159
+AW +++ A E
Sbjct: 230 SAWRAIRAAADE 241
>gi|383782235|ref|YP_005466802.1| putative ribonuclease III [Actinoplanes missouriensis 431]
gi|381375468|dbj|BAL92286.1| putative ribonuclease III [Actinoplanes missouriensis 431]
Length = 246
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +G +P Y SG H FT V +AG + G ++KKQAE+ AA
Sbjct: 167 WKTSLQELTAALGLGVPDYEIEDSGPDHAKTFTAWVVVAGERYGGSEGRSKKQAEQRAAA 226
Query: 148 AAWTSLKQLAK 158
AAW +L A+
Sbjct: 227 AAWRTLTDRAE 237
>gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
Length = 256
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 59 SAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
+A +V L + + + S++ R LD +K LQE+ + AP+P Y+ +G H
Sbjct: 151 TARDVILRLFAEKIDNASVSGRHLD----WKTTLQELCAELKAPMPVYSATATGPEHDQT 206
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
F+ + +AG+ NKK AE+ AA A +L++
Sbjct: 207 FSAVATVAGLTVGNGQGHNKKLAEQQAAQEACQTLRE 243
>gi|224143640|ref|XP_002336063.1| predicted protein [Populus trichocarpa]
gi|222869864|gb|EEF06995.1| predicted protein [Populus trichocarpa]
Length = 155
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK++LQ + Q+ + LP+Y ++G DH P F ATV N F SP S+ + A+ A
Sbjct: 1 MYKSKLQAVCQQRGWELPTYQVTKQGKDHNPLFSATVTVNATSFSSPSPSSSSKTAQSDA 60
Query: 61 AEVALSSL 68
A++A +
Sbjct: 61 AKLAFNHF 68
>gi|339320327|ref|YP_004680022.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
gi|338226452|gb|AEI89336.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
Length = 222
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 89 KNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
K+LLQE AQR LP Y + R G+ H P FT V + G K+KK+AE+NAA
Sbjct: 151 KSLLQEWAQRDNGALPIYKIVKREGVAHSPTFTISVTAHDMQAIG-IGKSKKEAEQNAAT 209
Query: 148 AAWTSLKQLAKET 160
A + + +L K+
Sbjct: 210 ALLSQINELEKKN 222
>gi|385678566|ref|ZP_10052494.1| ribonuclease III [Amycolatopsis sp. ATCC 39116]
Length = 230
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K LQEL + +P Y GPDH F ATV G F + + +T ++AE AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGN-GTTKKEAEQKAA 213
Query: 62 EVALSSLS 69
E A +LS
Sbjct: 214 ETAWRALS 221
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H F+ V +AG F KK+AE+ AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGNGTTKKEAEQKAAE 214
Query: 148 AAWTSLKQ 155
AW +L +
Sbjct: 215 TAWRALSE 222
>gi|403718446|ref|ZP_10943322.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
gi|403208467|dbj|GAB98005.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
Length = 267
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K LQELA F P Y EGPDH F A V + E+ + S ++AE AA
Sbjct: 173 WKTSLQELAASGSFGSPEYRVSEEGPDHEKVFTAHVVISEEVLGDGNGRSK-KEAEQKAA 231
Query: 62 EVALSSLSHR 71
E A L+ R
Sbjct: 232 EQAWKELTRR 241
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+A P+Y G H VFT V ++ ++KK+AE+ AA
Sbjct: 173 WKTSLQELAASGSFGSPEYRVSEEGPDHEKVFTAHVVISEEVLGDGNGRSKKEAEQKAAE 232
Query: 148 AAWTSLKQLAKETASSSSEPETND 171
AW L + A +S EPE D
Sbjct: 233 QAWKELTRRANAVLTSEPEPEALD 256
>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 300
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWTSLKQLA 157
+AW ++ A
Sbjct: 234 SAWREIRAAA 243
>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 303
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 177 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236
Query: 148 AAWTSLKQLA 157
+AW ++ A
Sbjct: 237 SAWREIRAAA 246
>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 272
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWTSLK 154
+AW S++
Sbjct: 230 SAWRSIR 236
>gi|354615572|ref|ZP_09033327.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
gi|353220077|gb|EHB84560.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
Length = 265
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 67 SLSHRGPSPSLAARILDETGV-YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVEL 125
SL HR LA L G+ +K LQE+ G +P+Y + +G H F +V +
Sbjct: 148 SLVHRLFGDLLAEAPLRGAGLDWKTSLQELTASAGLGVPEYKVVDTGPDHRKEFNAVVLV 207
Query: 126 AGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
G + KK+AE+ AA +AW +L +
Sbjct: 208 GGRSLGEGDGTTKKEAEQKAAESAWRALNE 237
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K LQEL + +P Y + GPDH F A V G +T ++AE AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVVDTGPDHRKEFNAVVLVGGRSLGEGD-GTTKKEAEQKAA 228
Query: 62 EVALSSLS 69
E A +L+
Sbjct: 229 ESAWRALN 236
>gi|347758995|ref|YP_004866557.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
gi|347591513|gb|AEP10555.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
Length = 232
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 89 KNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
K LQE AQ G PLP+YT I RSG H P+FT V + G E +++ AEK AA
Sbjct: 161 KTALQEWAQGQGHPLPRYTMIERSGPDHAPIFTVSVFVEGFDEVAEQGTSRRAAEKAAA 219
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
K LQE AQ LP YT I R GPDHAP F +V G F+ T R+A AA
Sbjct: 161 KTALQEWAQGQGHPLPRYTMIERSGPDHAPIFTVSVFVEG--FDEVAEQGTSRRAAEKAA 218
Query: 62 EVALSSL 68
L ++
Sbjct: 219 ATRLLNI 225
>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
Length = 274
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWTSL 153
+AW S+
Sbjct: 234 SAWRSI 239
>gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
Length = 256
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 59 SAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
+A +V L + + + +++ R LD +K LQE+ + AP+P Y+ +G H
Sbjct: 151 TARDVILRLFAEKIDNATVSGRHLD----WKTTLQELCAELKAPMPVYSATSTGPEHDQT 206
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
F + +AG+ NKK AE+ AA A +L++
Sbjct: 207 FNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRE 243
>gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
Length = 256
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 59 SAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
+A +V L + + + +++ R LD +K LQE+ + AP+P Y+ +G H
Sbjct: 151 TARDVILRLFAEKIDNATVSGRHLD----WKTTLQELCAELKAPMPVYSATSTGPEHDQT 206
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
F + +AG+ NKK AE+ AA A +L++
Sbjct: 207 FNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRE 243
>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
Length = 272
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWTSLK 154
+AW +++
Sbjct: 235 SAWRAIR 241
>gi|456388603|gb|EMF54043.1| rnc protein [Streptomyces bottropensis ATCC 25435]
Length = 271
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWTSLK 154
+AW +++
Sbjct: 235 SAWRAIR 241
>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
Length = 230
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMA 148
K LQEIA R+ P P Y+ +G H FT V + + TG +KKQAE AA+
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRVGDVVTTG-TGSSKKQAEMAAALT 221
Query: 149 AWTSLK 154
AW L
Sbjct: 222 AWRELD 227
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAE 62
K LQE+A R P+Y+ GPDH RF ATV G++ + S+ +QAE +AA
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRV-GDVVTTG-TGSSKKQAEMAAAL 220
Query: 63 VALSSLSHR 71
A L R
Sbjct: 221 TAWRELDAR 229
>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
Length = 273
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWTSLK 154
+AW ++
Sbjct: 234 SAWRGIR 240
>gi|383649281|ref|ZP_09959687.1| ribonuclease III [Streptomyces chartreusis NRRL 12338]
Length = 269
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 168 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 227
Query: 148 AAWTSL 153
+AW S+
Sbjct: 228 SAWRSI 233
>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
Length = 273
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 148 AAWTSLK 154
+AW S++
Sbjct: 241 SAWRSIR 247
>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
Length = 277
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWTSLK 154
+AW ++
Sbjct: 234 SAWRGIR 240
>gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
Length = 256
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 59 SAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
+A +V L + + ++ R +D +K LQE+ + AP+P YT +G H
Sbjct: 151 TARDVILRLFQKKIDNAVVSGRHMD----WKTNLQELCAELKAPMPVYTATSTGPEHDQT 206
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
FT + +AG+ NKK AE+ AA A +L++
Sbjct: 207 FTAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRE 243
>gi|398782208|ref|ZP_10546026.1| ribonuclease III [Streptomyces auratus AGR0001]
gi|396996945|gb|EJJ07924.1| ribonuclease III [Streptomyces auratus AGR0001]
Length = 253
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 148 AAW 150
+AW
Sbjct: 198 SAW 200
>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
gi|81719920|sp|Q82JT9.1|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
Length = 276
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWTSLK 154
+AW +++
Sbjct: 235 SAWRAIR 241
>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
Length = 238
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 32/66 (48%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMA 148
K LQE A R G P P Y SG H F +V + T +KKQAE AA+
Sbjct: 168 KTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTVGDAVRTTGEGSSKKQAEMTAALE 227
Query: 149 AWTSLK 154
AWT L+
Sbjct: 228 AWTRLE 233
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAE 62
K LQE A R P+Y GPDH+ RF A V G+ + S+ +QAE +AA
Sbjct: 168 KTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTV-GDAVRTTGEGSSKKQAEMTAAL 226
Query: 63 VALSSLSHR 71
A + L R
Sbjct: 227 EAWTRLEAR 235
>gi|443623856|ref|ZP_21108344.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
gi|443342637|gb|ELS56791.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
Length = 273
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 148 AAWTSL 153
+AW ++
Sbjct: 241 SAWRAI 246
>gi|453078061|ref|ZP_21980795.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
gi|452757696|gb|EME16098.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
Length = 231
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ GA +P Y +G H FT V +AG F + KK+AE+ AA
Sbjct: 138 WKTSLQELTAERGAGVPVYEITSTGPDHDKEFTATVLVAGAPFGVGVGRTKKEAEQKAAS 197
Query: 148 AAWTSLKQLAKETASSSS 165
+AW +L +AS S
Sbjct: 198 SAWQTLTDGQSGSASVDS 215
>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
Length = 275
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 183 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 242
Query: 148 AAWTSL 153
+AW ++
Sbjct: 243 SAWRAI 248
>gi|441178347|ref|ZP_20970023.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440614520|gb|ELQ77785.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 275
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 178 WKTSLQELTATEGLGVPEYMVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 237
Query: 148 AAW 150
+AW
Sbjct: 238 SAW 240
>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 238
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 32/66 (48%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMA 148
K LQE A R G P P Y SG H F +V + T +KKQAE AA+
Sbjct: 168 KTALQESAARQGLPAPVYDVSDSGPDHSKRFHAVVTVGDAVRTTGEGSSKKQAEMTAALE 227
Query: 149 AWTSLK 154
AWT L+
Sbjct: 228 AWTRLE 233
>gi|386382907|ref|ZP_10068467.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
gi|385669633|gb|EIF92816.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
Length = 285
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 179 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 238
Query: 148 AAW 150
+AW
Sbjct: 239 SAW 241
>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
Length = 296
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 167 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 226
Query: 148 AAW 150
+AW
Sbjct: 227 SAW 229
>gi|429197323|ref|ZP_19189225.1| ribonuclease III [Streptomyces ipomoeae 91-03]
gi|428666991|gb|EKX66112.1| ribonuclease III [Streptomyces ipomoeae 91-03]
Length = 275
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWTSL 153
+AW ++
Sbjct: 230 SAWRAI 235
>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|384146954|ref|YP_005529770.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|399535602|ref|YP_006548264.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|340525108|gb|AEK40313.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|398316372|gb|AFO75319.1| ribonuclease III [Amycolatopsis mediterranei S699]
Length = 234
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K LQEL + +P Y GPDH F ATV G ST ++AE AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFTATVLVAGRPL-GHGAGSTKKEAEQKAA 213
Query: 62 EVALSSLS 69
E A SLS
Sbjct: 214 ETAWRSLS 221
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT V +AG KK+AE+ AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFTATVLVAGRPLGHGAGSTKKEAEQKAAE 214
Query: 148 AAWTSLKQLAKETASSSSEPET 169
AW SL A+ A +EPE+
Sbjct: 215 TAWRSLS--AEVEAQKKAEPES 234
>gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233]
gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233]
Length = 249
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+A G +P+Y G H VF V L+G A + KK+AE+NAA
Sbjct: 164 WKTSLQELAAERGLGVPEYRVSEEGPDHAKVFAARVLLSGSARGTGTGRTKKEAEQNAAA 223
Query: 148 AAWTSLKQLAKETASSSSEPETND 171
AA+T L ++ A+ S P+T D
Sbjct: 224 AAYTGL----QDGAAGRSRPDTPD 243
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNG 41
+K LQELA +P Y EGPDHA F A V +G
Sbjct: 164 WKTSLQELAAERGLGVPEYRVSEEGPDHAKVFAARVLLSG 203
>gi|453053100|gb|EMF00570.1| ribonuclease III [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 275
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+ + ++KK+AE+ AA
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVEYGTGTGRSKKEAEQQAAE 197
Query: 148 AAWTSL 153
+AW ++
Sbjct: 198 SAWRAI 203
>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
Length = 249
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ ++G +P+Y SG H F V + + ++KK+AE+ AA
Sbjct: 170 WKTSLQELVAQLGVGVPEYVIAESGPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAAE 229
Query: 148 AAWTSLK 154
AW +L+
Sbjct: 230 TAWKALR 236
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K LQEL + +P Y GPDHA F+A V + + + ++AE AA
Sbjct: 170 WKTSLQELVAQLGVGVPEYVIAESGPDHAKTFEARVRIGSDTY-GHGIGRSKKEAEQQAA 228
Query: 62 EVALSSL 68
E A +L
Sbjct: 229 ETAWKAL 235
>gi|408680983|ref|YP_006880810.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 270
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y G H FT + G+++ ++KK+AE+ AA
Sbjct: 171 WKTSLQELTAAEGLGVPEYLVSEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 148 AAW 150
+AW
Sbjct: 231 SAW 233
>gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 63/156 (40%), Gaps = 28/156 (17%)
Query: 26 GPDHAPRFKATVNFNGEIF--------ESPHY------CSTLRQAEHSAAEV-------- 63
GP H PRF V NGE + Y STL++ E+SAA V
Sbjct: 30 GPSHDPRFTFQVFVNGEKLGEGQDKKKKGAEYMAAKMALSTLKERENSAATVIQTTSEQD 89
Query: 64 --ALSSLSHRGPSPSLAARILDETGV---YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
++ L+ SPS E G Y +L E+ Q+ + + R G H+P
Sbjct: 90 SSSIVFLASNTGSPSAVCIGETENGCDENYVGILHELCQK-HTLIVTFLDERHGQPHIPE 148
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
F + F KNKK+A++ AA A SLK
Sbjct: 149 FFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISLK 184
>gi|337287867|ref|YP_004627339.1| Ribonuclease 3 [Thermodesulfobacterium sp. OPB45]
gi|334901605|gb|AEH22411.1| Ribonuclease 3 [Thermodesulfobacterium geofontis OPF15]
Length = 237
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKATVNFNGEI 43
YK QLQELAQ+ P Y + GP H P+F+ + NGEI
Sbjct: 161 YKTQLQELAQKFYHKTPEYEILSVSGPSHNPKFEIGIKLNGEI 203
>gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
laevis]
gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 62/156 (39%), Gaps = 28/156 (17%)
Query: 26 GPDHAPRFKATVNFNGE--------------IFESPHYCSTLRQAEHSAAEV-------- 63
GP H PRF V NGE + STL++ E+SAA V
Sbjct: 30 GPSHDPRFTFQVFVNGEKLGEGQDKKKKGAECMAAKMALSTLKERENSAATVIQTTSEQD 89
Query: 64 --ALSSLSHRGPSPSLAARILDETGV---YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
++ L+ SPS E G Y +L E+ Q+ + + R G H+P
Sbjct: 90 SSSIVFLASNTGSPSAVCIGETENGCDENYVGILHELCQK-HTLIVTFLDERHGQPHIPE 148
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
F + F KNKK+A++ AA A SLK
Sbjct: 149 FFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISLK 184
>gi|284992411|ref|YP_003410965.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
gi|284065656|gb|ADB76594.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
Length = 270
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIF 44
+K LQEL R P+Y GPDHA F A V G ++
Sbjct: 187 WKTSLQELGARLGLGAPTYVVEDTGPDHAKTFTAAVVLAGTVY 229
>gi|365861190|ref|ZP_09400967.1| ribonuclease III [Streptomyces sp. W007]
gi|364009341|gb|EHM30304.1| ribonuclease III [Streptomyces sp. W007]
Length = 238
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 138 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 148 AAW 150
+AW
Sbjct: 198 SAW 200
>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 274
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces griseus XylebKG-1]
gi|411004906|ref|ZP_11381235.1| ribonuclease III [Streptomyces globisporus C-1027]
gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces griseus XylebKG-1]
Length = 274
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
Length = 274
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
>gi|149639721|ref|XP_001515387.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Ornithorhynchus
anatinus]
Length = 397
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 4 NQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAE 62
N LQELA R ++LP YT +E GP H F +N E + ++ +QA+ SAAE
Sbjct: 213 NSLQELAMRCGWSLPEYTLSKESGPAHKKEF--IMNCKLETYVETGTGASKKQAKESAAE 270
Query: 63 VALSSL 68
L+ L
Sbjct: 271 KLLAKL 276
>gi|345002305|ref|YP_004805159.1| ribonuclease III [Streptomyces sp. SirexAA-E]
gi|344317931|gb|AEN12619.1| ribonuclease III [Streptomyces sp. SirexAA-E]
Length = 274
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
>gi|294461945|gb|ADE76528.1| unknown [Picea sitchensis]
Length = 325
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 265 PQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSAPP----HPPPSALPPQMMRA 320
PQ P G++ P Y S +A PVT+RT++P SAPP H + ++ +
Sbjct: 218 PQTIPQPGSSFLAP--GYCGSPSSMAGPVTIRTSIPVCSAPPLRRSHSDFLSNDTNLVPS 275
Query: 321 PAVRIAPSVTVRQAVPVYAAPPVHR 345
P ++ AP+V +R +PV ++PP+ R
Sbjct: 276 P-LQTAPAVQIRSVIPVCSSPPLRR 299
>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
Length = 267
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIF 44
+K LQEL +P Y GPDHA F ATV G+ +
Sbjct: 169 WKTSLQELTAAESLGVPEYHVDESGPDHAKSFVATVRVGGKEY 211
>gi|407648449|ref|YP_006812208.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
gi|407311333|gb|AFU05234.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
Length = 244
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE G +P Y +G H FT + G+A+ ++KK+AE+NAA
Sbjct: 174 WKTSLQEHTAEHGLGVPSYEITSTGPDHDKEFTATAVVGGLAYGKGVGRSKKEAEQNAAA 233
Query: 148 AAWTSLKQ 155
AA+T+L Q
Sbjct: 234 AAYTALTQ 241
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,703,669,068
Number of Sequences: 23463169
Number of extensions: 352533534
Number of successful extensions: 1350807
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 11704
Number of HSP's that attempted gapping in prelim test: 1270020
Number of HSP's gapped (non-prelim): 48735
length of query: 470
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 324
effective length of database: 8,933,572,693
effective search space: 2894477552532
effective search space used: 2894477552532
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 79 (35.0 bits)