BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012154
(470 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 257/389 (66%), Positives = 292/389 (75%), Gaps = 15/389 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++LS+RGPS SLAARILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
G VELAGI FTG+PAKNKKQAEKNAAMAAW+SLKQLAKET+SS EPE DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
AL+NYR+KE + S+ +P+PFA+KF +QN RPTSPQP ATTS+ILP CPK SR
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240
Query: 241 PASSGANEKPAQPQPYGSEGRVV-RPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
+S A + E R RPQ+ A PYVP+RQ+R+ C G+APPVT+RT V
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFA--NPPYVPMRQFRSQCHGMAPPVTIRTAV 298
Query: 300 PCFSAPP----------HPPPSALPPQMMR-APAVRIAPSVTVRQAVPVYA-APPVHRDD 347
P FSAPP P S P +MR AP VRIAP VT+R AVPV+A APPV
Sbjct: 299 PVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVRIRT 358
Query: 348 SLTVRKEDPPTTPAPAQKVDSWTVFPPAI 376
++ E T + Q+ +S V P ++
Sbjct: 359 AVKPTVEAGETRISSVQEKESIPVLPDSL 387
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/343 (67%), Positives = 270/343 (78%), Gaps = 7/343 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA VNFNGE FESP + +TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL++L+ RGPS SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAGI FTG+PAKNKKQAEKNAA AAW+SL+QL ++ ASSS+EPE+NDE EQI IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180
Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTS-PQPPLATTSKILPLFCPKTASRH 239
ALLNYRLKEKMAMA+ + PF +KFP+Q R T+ PQ ++ SKILPLF PK+ SR
Sbjct: 181 ALLNYRLKEKMAMANNPHA-SPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRS 239
Query: 240 RPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
RP S A++ +Q +E R +FPAA AAPYVP+ +R C +APPVTVRT++
Sbjct: 240 RPESPAASDAASQTPFRPTESPNPR-SRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSI 298
Query: 300 PCFSAPPHPPPSA----LPPQMMRAPAVRIAPSVTVRQAVPVY 338
P FSAPP PPP A LPP M P +R+A V +R A P++
Sbjct: 299 PVFSAPPLPPPGARTQQLPPLMSHPPPIRMASPVRIRPAPPLF 341
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 137/185 (74%), Positives = 152/185 (82%), Gaps = 3/185 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE FESP +CSTLR AEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SLAA++LDETG+YKNLLQE A R G LP YTTIRSG GH PVFT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK--ETASSSSEPE-TNDELEQIT 177
VELAG+ FTG P K KKQA+KNAAMAAW+ LKQL + E +SSS P+ +D+ EQI
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180
Query: 178 IARAL 182
+AR L
Sbjct: 181 VARTL 185
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 271 bits (693), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 152/189 (80%), Gaps = 6/189 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVALS+LS +GPS SL AR+LDETG+YKNLLQE A R G LP YT++RSG GH+P F+
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG++F GE AK KKQAEKNAA+AAW SL+++ + +P +E EQ +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 174
Query: 181 ALLNYRLKE 189
L +R KE
Sbjct: 175 VLSRFRPKE 183
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 195/341 (57%), Gaps = 49/341 (14%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEV+L+ LS R PS SL A+ILDETG+YKNLLQE A R G LP YT++RSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
VELAG+ FTGE AK KKQAEKNAA+AAW+SLK++ SS ++E EQ +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 173
Query: 181 ALLNYR--------------------------LKEKMAMASTLDSPIPFARKFPVQNTRP 214
L ++ L E++ + L + + N
Sbjct: 174 VLSRFKPKEVRRRETTNQWRRRTSQQDSNKDLLIERLRWINLLTNQASSSSSTSTPNQHK 233
Query: 215 TSPQPPL------ATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSEGRVVR---- 264
S L +SKILP +++ SS + + S+ +V
Sbjct: 234 NSSFISLIPPPPPPKSSKILPFI-----QQYKDRSSQEAKTETATEMINSKAKVNETSTR 288
Query: 265 -PQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSA 304
++ P + Y + + +AP V +R+ +P F+A
Sbjct: 289 LSKQMPFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAA 329
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 257 bits (656), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 119/155 (76%), Positives = 131/155 (84%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKATV FNGE F+ P C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
AEVAL+ LS RGPS SL AR+LDETGVYKNLLQE A R G LP YTT+RSG GH PVF+
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VELAG++F G+PAK KK AEKNAAMAAW+SLKQ
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 93/155 (60%), Gaps = 8/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+ F+S + TL+ AEH+A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
A++A++SL+ + P A YKNLLQEIAQ+ + LP Y T SG H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
VE AG F+GE AK KK AE +AA A+ S+K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKN 150
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP Y T+++AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
++AL SL S + ++ + YKNLLQE+AQ+ G LP Y+T G +P+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS 164
V +F GEPA KKQAE NAA A+ + K SS+
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFEDRRKNALSST 246
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
MYK++LQEL Q+ + P YT GP HAP F ATV+ NG F +P + + H+
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 61 AEVALSSLSHRGPSPSLAARILDET-GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
A A ++ H P E YK+ LQ AQ+ G LP Y TIR G GH F
Sbjct: 61 A--AKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 TGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAKET 160
+V + G AF E K+AE AA A SL Q A +
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEASSS 160
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 93/167 (55%), Gaps = 6/167 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
AEVAL + P+ A I + ETG+ KNLLQE AQ++ +P Y +S G P
Sbjct: 93 AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSS 165
F VE+ GI + G A+ KK AE AA A +++ ++ +A+ ++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 195
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 73 PSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG 132
P+ + A ++ V+K+ LQE AQ+ G P+Y T + G H PVF V + ++
Sbjct: 19 PNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDS 78
Query: 133 EPA-KNKKQAEKNAAMAAWTSL 153
P N+K AE++AA A +
Sbjct: 79 LPGFFNRKAAEQSAAEVALMEI 100
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N ++S + AE SA
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
AEVAL + P+ A I + ETG+ KNLLQE AQ++ +P Y +S G P
Sbjct: 93 AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
F VE+ GI + G A+ KK AE AA A +++ ++ +A+ +++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATK 196
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 73 PSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG 132
P+ + A ++ V+K+ LQE AQ+ G P+Y T + G H PVF V + ++
Sbjct: 19 PNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDS 78
Query: 133 EPA-KNKKQAEKNAAMAAWTSL 153
P N+K AE++AA A +
Sbjct: 79 LPGFFNRKAAEQSAAEVALMEI 100
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 6/168 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ++ P Y +EGP H P FK+TV N + S S + AE SA
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
AEVAL + P+ A I + ETG+ KNLLQE AQ++ +P Y + G P
Sbjct: 95 AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP- 150
Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
F VE+ GI + G A+ KK AE AA A +++ ++ +A+ +++
Sbjct: 151 FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATK 198
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y ++EGP H F++TV +G + S + AE SA
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVF 119
AEVAL L+ ++ + ETG+ KNLLQE AQ++ +P Y + LG + F
Sbjct: 75 AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134
Query: 120 TGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158
T VE+ GI +TG + KK AE +A A +++ K
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTK 173
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 5/156 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
YK++LQE Q++ LP Y +G H +FK+TV +GE F S ++ AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 62 EVALSSLSHRGPSPSLAA---RILDETGVY-KNLLQEIAQRVGAPLPQYTTIRSGLGHLP 117
+VA +L R + + ++D+ V+ K++L E + P+Y+ ++ G +
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTE-GSVT 157
Query: 118 VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153
+ V AG +TG A+NKK AE+ AA AA SL
Sbjct: 158 PYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 148 AAWTSLKQLAKETASSSSEPETND 171
+AW S++ A E A ++++ D
Sbjct: 245 SAWRSIRAAADERAKATADAVDAD 268
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K LQEL +P Y GPDH F A G + + S ++AE AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 243
Query: 62 EVALSSL 68
E A S+
Sbjct: 244 ESAWRSI 250
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
Score = 32.3 bits (72), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
YK LQEI QR L +Y + +G H F V + G + KKQAE++AA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219
Query: 147 MAAWTSL 153
A L
Sbjct: 220 QFAINQL 226
>sp|Q71YL2|RNC_LISMF Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=rnc PE=3 SV=1
Length = 229
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
YK LQEI QR L +Y + +G H F V + G + KKQAE++AA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219
Query: 147 MAAWTSL 153
A L
Sbjct: 220 QFAINQL 226
>sp|C1KWA4|RNC_LISMC Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=rnc PE=3 SV=1
Length = 229
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
YK LQEI QR L +Y + +G H F V + G + KKQAE++AA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219
Query: 147 MAAWTSL 153
A L
Sbjct: 220 QFAINQL 226
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
YK LQEI QR L +Y + +G H F V + G + KKQAE++AA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219
Query: 147 MAAWTSL 153
A L
Sbjct: 220 QFAINQL 226
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L+HR
Sbjct: 219 AQFAINQLTHR 229
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK QLQE+ QR L Y + E GP H F A V NG++ T +QAE SA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVL-GKGSGRTKKQAEQSA 218
Query: 61 AEVALSSLSHR 71
A+ A++ L HR
Sbjct: 219 AQFAINKLIHR 229
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
YK LQEI QR L +Y + +G H F V + G + KKQAE++AA
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219
Query: 147 MAAWTSL 153
A L
Sbjct: 220 QFAINKL 226
>sp|Q6AFJ4|RNC_LEIXX Ribonuclease 3 OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=rnc
PE=3 SV=1
Length = 237
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%)
Query: 89 KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMA 148
K LQE A GA P YT I +G H F V++ G+ +KKQAE AA++
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 149 AWTSL 153
AWT+L
Sbjct: 223 AWTAL 227
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAE 62
K LQE A P YT I GPDH+ F ATV+ G + S S +QAE +AA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSK-KQAEMAAAL 221
Query: 63 VALSSLS-HRGPSP 75
A ++L+ HR +P
Sbjct: 222 SAWTALTNHRARTP 235
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K LQEL +P Y GPDH F+ATV G+ + S S ++AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEGRSK-KEAEQQAA 222
Query: 62 EVALSSL 68
E A ++
Sbjct: 223 ESAWKAI 229
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 66 SSLSHRGPSPSLA-ARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVE 124
S L HR P +A A L +K LQE+ +P+Y SG H F V
Sbjct: 141 SELVHRLFDPLIARASGLGAGLDWKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVR 200
Query: 125 LAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154
+AG + ++KK+AE+ AA +AW +++
Sbjct: 201 VAGQTYGSGEGRSKKEAEQQAAESAWKAIR 230
>sp|Q73NX5|RNC_TREDE Ribonuclease 3 OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=rnc PE=3 SV=1
Length = 246
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK+ LQEL Q+ +P Y + GPDH F +V+ NG+++ P T ++AE S
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALSSL 68
A+VA +L
Sbjct: 231 AKVAYENL 238
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
YK+LLQE+ Q+ +P+Y + SG H F V + G + K KK+AE++ A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 147 MAAWTSL 153
A+ +L
Sbjct: 232 KVAYENL 238
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P+Y +G H FT + G+++ ++KK+AE+ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWTSLK 154
+AW +++
Sbjct: 235 SAWRAIR 241
Score = 35.8 bits (81), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
+K LQEL +P Y GPDH F A G + + S ++AE AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 233
Query: 62 EVA 64
E A
Sbjct: 234 ESA 236
>sp|B2S448|RNC_TREPS Ribonuclease 3 OS=Treponema pallidum subsp. pallidum (strain SS14)
GN=rnc PE=3 SV=1
Length = 254
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK+ LQ LA + + P YT + R GPDH+ RF V F P Y ++ + AE A
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARF-GPGYGTSKKSAEQCA 240
Query: 61 AEVALSSLS 69
A +A LS
Sbjct: 241 ARLAWEQLS 249
>sp|O83787|RNC_TREPA Ribonuclease 3 OS=Treponema pallidum (strain Nichols) GN=rnc PE=3
SV=1
Length = 254
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
YK+ LQ LA + + P YT + R GPDH+ RF V F P Y ++ + AE A
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARF-GPGYGTSKKSAEQCA 240
Query: 61 AEVALSSLS 69
A +A LS
Sbjct: 241 ARLAWEQLS 249
>sp|O69469|RNC_MYCLE Ribonuclease 3 OS=Mycobacterium leprae (strain TN) GN=rnc PE=3 SV=1
Length = 238
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
+K LQE+ G +P Y +G H FT +V + + +KK+AE+ AA
Sbjct: 162 WKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVVVVMDTEYGSGIGHSKKEAEQKAAS 221
Query: 148 AAWTSLKQLA 157
AAW +L L
Sbjct: 222 AAWKALDVLG 231
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTL----RQAE 57
+K LQEL +PSY GPDH F A V + Y S + ++AE
Sbjct: 162 WKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVV-----VVMDTEYGSGIGHSKKEAE 216
Query: 58 HSAAEVALSSLSHRG 72
AA A +L G
Sbjct: 217 QKAASAAWKALDVLG 231
>sp|Q1D5X9|RNC_MYXXD Ribonuclease 3 OS=Myxococcus xanthus (strain DK 1622) GN=rnc PE=3
SV=1
Length = 260
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 79 ARILDETGV------YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFT 131
A +LDE YK LLQE+A P+Y + SG H VF + L AF
Sbjct: 158 ADLLDEVSSGQGRLDYKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGETAFA 217
Query: 132 GEPAKNKKQAEKNAAMAAWTSLKQ 155
++KK+AE++AA A L++
Sbjct: 218 RATGRSKKEAEQSAAQATLEKLRE 241
>sp|Q9A805|RNC_CAUCR Ribonuclease 3 OS=Caulobacter crescentus (strain ATCC 19089 / CB15)
GN=rnc PE=3 SV=1
Length = 231
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 89 KNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGI 128
K LQE AQ G PLP Y + R+G H PVFT V + G+
Sbjct: 163 KTALQEWAQGQGRPLPTYRVLDRTGPDHAPVFTVEVSVTGV 203
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNG 41
K LQE AQ LP+Y + R GPDHAP F V+ G
Sbjct: 163 KTALQEWAQGQGRPLPTYRVLDRTGPDHAPVFTVEVSVTG 202
>sp|B8H627|RNC_CAUCN Ribonuclease 3 OS=Caulobacter crescentus (strain NA1000 / CB15N)
GN=rnc PE=3 SV=1
Length = 231
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 89 KNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGI 128
K LQE AQ G PLP Y + R+G H PVFT V + G+
Sbjct: 163 KTALQEWAQGQGRPLPTYRVLDRTGPDHAPVFTVEVSVTGV 203
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNG 41
K LQE AQ LP+Y + R GPDHAP F V+ G
Sbjct: 163 KTALQEWAQGQGRPLPTYRVLDRTGPDHAPVFTVEVSVTG 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,886,525
Number of Sequences: 539616
Number of extensions: 8107121
Number of successful extensions: 30719
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 1053
Number of HSP's that attempted gapping in prelim test: 26065
Number of HSP's gapped (non-prelim): 3230
length of query: 470
length of database: 191,569,459
effective HSP length: 121
effective length of query: 349
effective length of database: 126,275,923
effective search space: 44070297127
effective search space used: 44070297127
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)