Query 012154
Match_columns 470
No_of_seqs 270 out of 1955
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 23:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3732 Staufen and related do 99.9 6.7E-25 1.5E-29 221.1 17.9 152 2-157 40-213 (339)
2 cd00048 DSRM Double-stranded R 99.6 6.8E-15 1.5E-19 112.4 9.1 67 87-153 1-68 (68)
3 smart00358 DSRM Double-strande 99.6 1.5E-14 3.3E-19 110.9 8.6 65 2-68 1-66 (67)
4 smart00358 DSRM Double-strande 99.6 1.9E-14 4.2E-19 110.4 8.9 65 88-153 1-66 (67)
5 PHA02701 ORF020 dsRNA-binding 99.6 1.3E-14 2.9E-19 136.9 9.5 72 84-156 106-178 (183)
6 cd00048 DSRM Double-stranded R 99.5 2.4E-14 5.3E-19 109.4 8.8 67 1-68 1-68 (68)
7 PF00035 dsrm: Double-stranded 99.5 2.7E-14 5.8E-19 110.3 8.5 66 88-153 1-67 (67)
8 PHA02701 ORF020 dsRNA-binding 99.5 1.7E-14 3.6E-19 136.3 8.5 68 1-70 109-177 (183)
9 PHA03103 double-strand RNA-bin 99.5 4.5E-14 9.8E-19 133.6 9.8 71 84-155 107-177 (183)
10 PF00035 dsrm: Double-stranded 99.5 4.4E-14 9.5E-19 109.1 7.6 66 2-68 1-67 (67)
11 PHA03103 double-strand RNA-bin 99.5 9.2E-14 2E-18 131.5 8.5 67 2-70 111-177 (183)
12 PRK12371 ribonuclease III; Rev 99.5 1.7E-13 3.7E-18 133.4 9.7 71 85-155 160-231 (235)
13 PRK12371 ribonuclease III; Rev 99.4 2.4E-13 5.1E-18 132.4 8.8 68 2-70 163-231 (235)
14 COG0571 Rnc dsRNA-specific rib 99.4 1E-12 2.3E-17 128.5 9.5 72 85-156 160-232 (235)
15 COG0571 Rnc dsRNA-specific rib 99.4 1.6E-12 3.6E-17 127.2 8.6 69 2-71 163-232 (235)
16 PRK14718 ribonuclease III; Pro 99.3 2.1E-12 4.5E-17 135.8 9.3 70 85-154 150-221 (467)
17 PRK14718 ribonuclease III; Pro 99.3 2E-12 4.3E-17 135.9 8.4 71 2-73 153-225 (467)
18 PRK12372 ribonuclease III; Rev 99.3 5.8E-12 1.2E-16 131.4 9.7 71 85-155 150-222 (413)
19 PRK00102 rnc ribonuclease III; 99.3 1E-11 2.2E-16 118.1 9.6 72 84-155 156-228 (229)
20 PRK12372 ribonuclease III; Rev 99.3 6E-12 1.3E-16 131.3 8.7 71 2-73 153-225 (413)
21 PF14709 DND1_DSRM: double str 99.2 2E-11 4.4E-16 101.3 7.6 68 87-154 2-80 (80)
22 KOG2777 tRNA-specific adenosin 99.2 6.8E-11 1.5E-15 126.8 13.5 154 18-184 10-185 (542)
23 TIGR02191 RNaseIII ribonucleas 99.2 2.6E-11 5.7E-16 114.2 9.1 70 84-153 150-220 (220)
24 PRK00102 rnc ribonuclease III; 99.2 2.9E-11 6.3E-16 114.9 8.6 68 2-70 160-228 (229)
25 PF14709 DND1_DSRM: double str 99.2 4.6E-11 1E-15 99.2 6.8 68 2-69 3-80 (80)
26 TIGR02191 RNaseIII ribonucleas 99.2 6.5E-11 1.4E-15 111.6 8.3 66 2-68 154-220 (220)
27 KOG3732 Staufen and related do 99.2 5.5E-11 1.2E-15 121.0 8.3 105 50-158 2-109 (339)
28 KOG4334 Uncharacterized conser 98.8 3.3E-08 7.1E-13 105.0 10.4 148 2-155 377-558 (650)
29 KOG1817 Ribonuclease [RNA proc 98.2 5.4E-06 1.2E-10 87.6 8.9 72 84-155 425-503 (533)
30 KOG0921 Dosage compensation co 98.1 3.8E-06 8.3E-11 94.8 5.8 158 2-161 3-246 (1282)
31 KOG1817 Ribonuclease [RNA proc 97.9 2.2E-05 4.9E-10 83.1 8.1 69 2-71 429-504 (533)
32 KOG2777 tRNA-specific adenosin 97.8 6.3E-05 1.4E-09 81.7 8.6 64 2-72 92-156 (542)
33 KOG4334 Uncharacterized conser 97.3 0.00018 3.9E-09 77.3 4.4 73 87-160 376-448 (650)
34 KOG3769 Ribonuclease III domai 96.9 0.0021 4.5E-08 65.9 7.2 73 85-157 231-305 (333)
35 KOG3769 Ribonuclease III domai 96.7 0.0017 3.7E-08 66.4 4.2 69 2-71 234-304 (333)
36 KOG3792 Transcription factor N 96.6 0.0016 3.4E-08 72.7 4.0 130 18-155 386-571 (816)
37 PF03368 Dicer_dimer: Dicer di 96.3 0.014 3.1E-07 49.4 6.9 66 89-158 2-76 (90)
38 KOG0921 Dosage compensation co 94.6 0.049 1.1E-06 63.0 5.7 71 87-158 2-73 (1282)
39 PF03368 Dicer_dimer: Dicer di 93.7 0.12 2.6E-06 43.8 5.0 66 3-73 2-76 (90)
40 PF14954 LIX1: Limb expression 92.0 0.38 8.3E-06 47.9 6.3 68 84-151 19-93 (252)
41 KOG2334 tRNA-dihydrouridine sy 86.3 0.25 5.3E-06 53.2 0.4 67 2-71 377-443 (477)
42 KOG2334 tRNA-dihydrouridine sy 86.0 0.41 8.8E-06 51.6 1.8 71 85-158 374-445 (477)
43 PF14954 LIX1: Limb expression 82.7 2.5 5.4E-05 42.3 5.5 71 4-74 25-102 (252)
44 PRK00394 transcription factor; 70.5 79 0.0017 30.4 11.8 145 6-157 18-176 (179)
45 KOG3792 Transcription factor N 67.6 5.3 0.00012 45.7 3.7 62 4-69 507-570 (816)
46 KOG2236 Uncharacterized conser 54.9 2E+02 0.0042 32.1 12.5 31 288-323 435-465 (483)
47 cd04518 TBP_archaea archaeal T 54.2 2E+02 0.0043 27.6 11.3 141 6-155 19-173 (174)
48 cd00652 TBP_TLF TATA box bindi 36.4 3.9E+02 0.0084 25.5 11.8 140 6-153 19-172 (174)
49 PF02169 LPP20: LPP20 lipoprot 33.3 56 0.0012 26.7 3.5 29 129-157 14-42 (92)
50 cd04516 TBP_eukaryotes eukaryo 27.5 5.6E+02 0.012 24.6 11.5 131 6-143 19-162 (174)
51 COG1944 Uncharacterized conser 24.9 2.3E+02 0.0049 30.9 7.2 67 88-157 19-88 (398)
52 TIGR03549 conserved hypothetic 24.4 8.9E+02 0.019 28.6 12.0 66 87-156 160-228 (718)
53 PF14657 Integrase_AP2: AP2-li 23.7 2.5E+02 0.0055 20.7 5.3 18 132-149 21-38 (46)
No 1
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.93 E-value=6.7e-25 Score=221.07 Aligned_cols=152 Identities=28% Similarity=0.301 Sum_probs=130.7
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCCcc---
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSL--- 77 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~sL--- 77 (470)
..|.|||||.+++. .|.|++. ++||.|++.|+++|.|+... .. |.|+|||.|||.||..+|..|....+....
T Consensus 40 ~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~~~-a~-GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~ 116 (339)
T KOG3732|consen 40 PISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGEIT-AT-GEGKSKKLAKHRAAEALLKELKKLPPLANVRKD 116 (339)
T ss_pred hHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEeeeE-Ee-cCCCchhHHHHHHHHHHHHHHhcCCCccccccC
Confidence 57999999999986 4899998 79999999999999998554 34 599999999999999999999986542210
Q ss_pred ----c--c-c----------ccccCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHH
Q 012154 78 ----A--A-R----------ILDETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKK 139 (470)
Q Consensus 78 ----s--s-~----------i~D~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKK 139 (470)
+ . . ..+...|++++||||||+++|.+|.|+++ +.|.+|.++|+++|.+.+..- .|.|.|||
T Consensus 117 ~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~-~GkG~sKK 195 (339)
T KOG3732|consen 117 SLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTE-EGKGPSKK 195 (339)
T ss_pred cccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceee-ecCCchHH
Confidence 0 0 0 01246799999999999999999999999 889999999999999999985 48999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 012154 140 QAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 140 eAKQ~AAk~ALe~Lk~~~ 157 (470)
.||++||.+||+.|+...
T Consensus 196 iAKRnAAeamLe~l~~~~ 213 (339)
T KOG3732|consen 196 IAKRNAAEAMLESLGFVK 213 (339)
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 999999999999998554
No 2
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.59 E-value=6.8e-15 Score=112.43 Aligned_cols=67 Identities=42% Similarity=0.550 Sum_probs=62.5
Q ss_pred chhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154 87 VYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153 (470)
Q Consensus 87 NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L 153 (470)
|||+.|+||||++++..|.|++. ..|++|.+.|+|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 78999999999999999999996 78999999999999999988888999999999999999999865
No 3
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.56 E-value=1.5e-14 Score=110.93 Aligned_cols=65 Identities=48% Similarity=0.648 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHh
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL 68 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L 68 (470)
||+.|+||||++++ .|.|++. ..|++|.+.|+|+|.++|..++. |.|.|||+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGE-GEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEE-eccCCHHHHHHHHHHHHHHhc
Confidence 68999999999999 7999988 58999999999999999988887 489999999999999999987
No 4
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.55 E-value=1.9e-14 Score=110.39 Aligned_cols=65 Identities=40% Similarity=0.503 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154 88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153 (470)
Q Consensus 88 pKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L 153 (470)
||+.|+||||++++ .|.|++. ..|++|.+.|+|+|.|+|+.++.|.|.|||+||++||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 58899999999999 7999988 57999999999999999998888999999999999999999887
No 5
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.55 E-value=1.3e-14 Score=136.93 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=66.8
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~ 156 (470)
...|||+.||||||+++..+ .|.++ +.|++|.+.|+++|.|+|..++.|.|+|||+|||+||+.||+.|...
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999988 89887 67999999999999999999999999999999999999999998543
No 6
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.55 E-value=2.4e-14 Score=109.38 Aligned_cols=67 Identities=45% Similarity=0.610 Sum_probs=61.2
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHh
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL 68 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L 68 (470)
.||+.|+||||++++..|.|++. ..|++|.+.|+|.|.++|..++. |.|.|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGE-GEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEE-eecCCHHHHHHHHHHHHHHhC
Confidence 37999999999998888999996 78999999999999999977777 499999999999999999875
No 7
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.54 E-value=2.7e-14 Score=110.32 Aligned_cols=66 Identities=30% Similarity=0.370 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHhCCCCCeEEeeccCCCCC-CeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154 88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHL-PVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153 (470)
Q Consensus 88 pKS~LQE~cQK~~l~lP~Ye~vesGP~H~-p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L 153 (470)
||+.|+|||+++++.++.|.+...|++|. +.|.|+|.|+|..++.|.|+|||+||+.||+.||..|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 68999999999999988776665555544 8999999999999999999999999999999999987
No 8
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.53 E-value=1.7e-14 Score=136.26 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=63.1
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
.||+.||||||+++..+ .|.+. +.|++|.+.|+++|+|+|..++.| .|+|||+|||+||+.||..|..
T Consensus 109 DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 109 NPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA-SGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHHHh
Confidence 38999999999999887 89887 779999999999999999999985 9999999999999999999865
No 9
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.52 E-value=4.5e-14 Score=133.55 Aligned_cols=71 Identities=27% Similarity=0.308 Sum_probs=64.2
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
...|||+.||||||+++... .|.+.+.|++|.+.|+++|.|+|..++.|.|+|||+|||+||+.||..|..
T Consensus 107 K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 107 KDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred ccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 35699999999999999885 455458899999999999999999999999999999999999999999854
No 10
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.51 E-value=4.4e-14 Score=109.12 Aligned_cols=66 Identities=36% Similarity=0.532 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEeeeCCCCC-CcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHh
Q 012154 2 YKNQLQELAQRSCFNLPSYTCIREGPDHA-PRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL 68 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~eeGP~H~-prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L 68 (470)
||+.|+|||++.++.++.|.....|++|. +.|.|+|+|+|..++. |.|.|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGE-GEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeE-eccCCHHHHHHHHHHHHHHhC
Confidence 79999999999998766555656666665 8999999999999987 499999999999999999987
No 11
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.48 E-value=9.2e-14 Score=131.48 Aligned_cols=67 Identities=27% Similarity=0.400 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
||+.||||||+++... .|.+...|++|.+.|+++|+|+|..+++| .|+|||+|||+||+.||..|..
T Consensus 111 pKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 111 PCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPA-IGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred hhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence 7899999999998774 45444889999999999999999999985 9999999999999999999864
No 12
>PRK12371 ribonuclease III; Reviewed
Probab=99.46 E-value=1.7e-13 Score=133.40 Aligned_cols=71 Identities=32% Similarity=0.244 Sum_probs=67.0
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
..|||+.||||||+.+...|.|+++ ++|++|.+.|+|+|.++|..++.|.|+|||+||++||+.||+.|+.
T Consensus 160 ~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 160 RRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred cCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 4599999999999999999999988 7899999999999999999999999999999999999999998865
No 13
>PRK12371 ribonuclease III; Reviewed
Probab=99.44 E-value=2.4e-13 Score=132.38 Aligned_cols=68 Identities=37% Similarity=0.410 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
||+.||||||++++..|.|++. +.||+|.+.|+|+|.++|..+++| .|+|||+||++||+.||+.|..
T Consensus 163 ~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g-~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 163 AKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETG-EGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHhhh
Confidence 8999999999998888999988 789999999999999999999885 9999999999999999999864
No 14
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.39 E-value=1e-12 Score=128.50 Aligned_cols=72 Identities=32% Similarity=0.331 Sum_probs=68.2
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~ 156 (470)
..|||++||||||+.+..+|.|.++ .+|++|++.|++.|.++|..++.|.|+|||+|||.||+.||..|...
T Consensus 160 ~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 160 FKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred ccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 4799999999999999999999998 67999999999999999999999999999999999999999998654
No 15
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.36 E-value=1.6e-12 Score=127.15 Aligned_cols=69 Identities=35% Similarity=0.498 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
||+.||||||++++.+|.|.++ ++|++|++.|++.|.++|..++.| .|+|||+|||.||+.||..|...
T Consensus 163 ~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G-~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTG-KGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred hhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEe-cccCHHHHHHHHHHHHHHHhccc
Confidence 7999999999999999999998 779999999999999999999885 99999999999999999998764
No 16
>PRK14718 ribonuclease III; Provisional
Probab=99.35 E-value=2.1e-12 Score=135.78 Aligned_cols=70 Identities=26% Similarity=0.287 Sum_probs=65.5
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEE-eeecccCCHHHHHHHHHHHHHHHHH
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIA-FTGEPAKNKKQAEKNAAMAAWTSLK 154 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~-f~~G~GkSKKeAKQ~AAk~ALe~Lk 154 (470)
..|||+.||||||++++.+|.|.++ ++|++|.+.|++.|.|+|.. ++.|.|.|||+|||+||+.||+.|+
T Consensus 150 ~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred ccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999998 78999999999999999964 4789999999999999999999996
No 17
>PRK14718 ribonuclease III; Provisional
Probab=99.34 E-value=2e-12 Score=135.92 Aligned_cols=71 Identities=30% Similarity=0.368 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEE-ecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIF-ESPHYCSTLRQAEHSAAEVALSSLSHRGP 73 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~-gsGG~GsSKKeAEq~AAk~AL~~L~~~~p 73 (470)
||+.||||||++++.+|+|.++ ++|++|++.|++.|+|+|..+ +. |.|.|||+|||.||+.||+.|....+
T Consensus 153 yKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~-G~G~SKKeAEQ~AAk~AL~kL~~~~~ 225 (467)
T PRK14718 153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVS-GSGASRRAAEQAAAKKALDEVTAVAP 225 (467)
T ss_pred HHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEE-EEcCCHHHHHHHHHHHHHHHhcccch
Confidence 8999999999999999999998 789999999999999999654 66 59999999999999999999986543
No 18
>PRK12372 ribonuclease III; Reviewed
Probab=99.31 E-value=5.8e-12 Score=131.40 Aligned_cols=71 Identities=25% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEE-eeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIA-FTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~-f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
..|||+.||||||++++..|.|.++ +.|++|.+.|+|.|.|+|.. ++.|.|.|||+|||+||+.||+.|..
T Consensus 150 ~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred cCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999998 78999999999999999854 56799999999999999999999973
No 19
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.29 E-value=1e-11 Score=118.06 Aligned_cols=72 Identities=36% Similarity=0.454 Sum_probs=67.3
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
...|||+.|+||||++++..|.|.++ .+|+.|.+.|+|+|.++|..++.|.|.|||+||++||+.||+.|+.
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 45699999999999999999999987 6799999999999999999999999999999999999999999864
No 20
>PRK12372 ribonuclease III; Reviewed
Probab=99.29 E-value=6e-12 Score=131.25 Aligned_cols=71 Identities=30% Similarity=0.341 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEE-EecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEI-FESPHYCSTLRQAEHSAAEVALSSLSHRGP 73 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~-~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p 73 (470)
||+.||||||++++.+|+|++. +.|++|++.|+++|+|+|.. ++. |.|.|||+|||+||+.||+.|....+
T Consensus 153 ~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~-G~G~SKKeAEQ~AAr~AL~kL~~~~~ 225 (413)
T PRK12372 153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVS-GSGASRRAAEQAAAKKALDEVMAAAP 225 (413)
T ss_pred HHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEE-EEeCCHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999999999988 88999999999999999854 456 58999999999999999999996544
No 21
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.24 E-value=2e-11 Score=101.31 Aligned_cols=68 Identities=29% Similarity=0.416 Sum_probs=60.5
Q ss_pred chhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEee---------e-cccCCHHHHHHHHHHHHHHHHH
Q 012154 87 VYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFT---------G-EPAKNKKQAEKNAAMAAWTSLK 154 (470)
Q Consensus 87 NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~---------~-G~GkSKKeAKQ~AAk~ALe~Lk 154 (470)
++++.|+|+|++++|+.|.|++. +.||+|...|++.|.|.+..+. . -...+||+||..||+.+|..|+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 67999999999999999999998 7899999999999999987762 2 2456899999999999999874
No 22
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.24 E-value=6.8e-11 Score=126.77 Aligned_cols=154 Identities=29% Similarity=0.347 Sum_probs=117.2
Q ss_pred CceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCC-----------ccccc-----
Q 012154 18 PSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSP-----------SLAAR----- 80 (470)
Q Consensus 18 PeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~-----------sLss~----- 80 (470)
+.|... +.||.|.+.|.+.|.|+|..+ . ||.|+..||+.+++.+.+..... .+.+.
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~----~---~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEF----P---KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF 82 (542)
T ss_pred cccccccccCCCCCCcccceEEeccccc----c---cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence 678877 889999999999999999754 2 99999999999999987653311 11110
Q ss_pred --ccccCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 81 --ILDETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 81 --i~D~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
...+..|+++.|+|+++ -+.|++. +.|+.|.+.|.|.|.|+|..|.+| |.|||+||++||+.||..|....
T Consensus 83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 12357899999999999 4678887 889999999999999999999877 99999999999999999998877
Q ss_pred cccCCC--CCCCCCchhHHHHHHHHHHhh
Q 012154 158 KETASS--SSEPETNDELEQITIARALLN 184 (470)
Q Consensus 158 ~e~~s~--~~~~e~~de~E~~~iar~L~~ 184 (470)
...... ..--++.....+.+-...|..
T Consensus 157 ~~~~~~~~~~~~e~~~~~~~~Ia~lv~~k 185 (542)
T KOG2777|consen 157 ENPERPSEALTLENPSTLGDEIAELVLEK 185 (542)
T ss_pred CCcccccccccccCCChHHHHHHHHHHHH
Confidence 654332 122334444444333333443
No 23
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.24 E-value=2.6e-11 Score=114.20 Aligned_cols=70 Identities=43% Similarity=0.515 Sum_probs=65.4
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L 153 (470)
...|||+.|+||||++++..|.|++. ..|++|.+.|.|.|.++|..++.|.|.|||+||++||+.||+.|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999998 67999999999999999999999999999999999999999864
No 24
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.22 E-value=2.9e-11 Score=114.95 Aligned_cols=68 Identities=38% Similarity=0.574 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
||+.|+||||++++..|.|++. .+|+.|.+.|+|+|.++|..+++| .|.|||+||++||+.||+.|..
T Consensus 160 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEG-TGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhh
Confidence 7999999999999988999987 679999999999999999999885 9999999999999999999864
No 25
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.18 E-value=4.6e-11 Score=99.16 Aligned_cols=68 Identities=32% Similarity=0.440 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEe---------cccccCCccHHHHHHHHHHHHHhh
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFE---------SPHYCSTLRQAEHSAAEVALSSLS 69 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~g---------sGG~GsSKKeAEq~AAk~AL~~L~ 69 (470)
.++.|+|+|+|++|..|+|++. +.||+|.+.|++.|.|+|..+. .+--..+||+|+..||+.+|..|+
T Consensus 3 a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 3 AVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999997 7899999999999999987762 112357899999999999999874
No 26
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.17 E-value=6.5e-11 Score=111.56 Aligned_cols=66 Identities=42% Similarity=0.606 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHh
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL 68 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L 68 (470)
||+.|+||||++++..|.|++. ..|++|.+.|.|.|.++|+.+++| .|.|||+||++||+.||+.|
T Consensus 154 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g-~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEG-KGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred hHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHhC
Confidence 7999999999998888999998 679999999999999999999885 89999999999999999875
No 27
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.17 E-value=5.5e-11 Score=121.04 Aligned_cols=105 Identities=32% Similarity=0.323 Sum_probs=87.7
Q ss_pred cCCccHHHHHHHHHHHHHhhccCCCCccccccc-ccC-CchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEEC
Q 012154 50 CSTLRQAEHSAAEVALSSLSHRGPSPSLAARIL-DET-GVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELA 126 (470)
Q Consensus 50 GsSKKeAEq~AAk~AL~~L~~~~pS~sLss~i~-D~~-~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~ 126 (470)
|.+.-+|+|+||..+|..|.....+... .+. |.. ..+++.|||||.+++..+ .|++. ++|+.|.+.|++.|.|+
T Consensus 2 g~t~~~a~~daaa~al~~l~~~~~~~~~--~~~~~~g~KS~IS~l~E~~~r~~~~v-~fevl~eeGp~H~~~fv~rvtvg 78 (339)
T KOG3732|consen 2 GKTMQQAKHDAAAKALQVLQNGLISEGV--MLNADPGAKSPISLLQEYGLRRGLTP-VYEVLREEGPPHMPNFVFRVTVG 78 (339)
T ss_pred ccchhhhhccccccchhhccCCCcchhc--ccccCcccCChHHHHHHHHHHhCCCc-ceeeeeccCCccCCCeEEEEEEe
Confidence 6788899999999999999876543221 111 222 688999999999999875 69998 69999999999999999
Q ss_pred CEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154 127 GIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158 (470)
Q Consensus 127 G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~ 158 (470)
.... .|.|+|||.||++||..+|..|+.+..
T Consensus 79 ~~~a-~GeG~sKK~AKh~AA~~~L~~lk~l~~ 109 (339)
T KOG3732|consen 79 EITA-TGEGKSKKLAKHRAAEALLKELKKLPP 109 (339)
T ss_pred eeEE-ecCCCchhHHHHHHHHHHHHHHhcCCC
Confidence 7764 589999999999999999999998864
No 28
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.76 E-value=3.3e-08 Score=105.00 Aligned_cols=148 Identities=22% Similarity=0.153 Sum_probs=101.2
Q ss_pred cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC-CCc----
Q 012154 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP-SPS---- 76 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p-S~s---- 76 (470)
..-.|+||+|+....+|.|++.+.- ...-.|.+.|.+|+..||+| .|.|||.|+..||+.+|..|.-.-. +.+
T Consensus 377 ~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG-~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d 454 (650)
T KOG4334|consen 377 KVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSG-VGASKKTAKLVAARDTLEILIPDLRVSEDNVCD 454 (650)
T ss_pred eeehHHHHHHHHhhhcceeehhhcc-CCCCcccccccccccccccc-cccchHHHHHHHHHHHHHHhcchhhhccccccc
Confidence 3457999999999899999887322 24678999999999999995 9999999999999999999864211 000
Q ss_pred ------------cc--c--cccc----------cCCchhhHHHHHHHHh-CCCCC--eEEeeccCCCCCCeEEEEEEECC
Q 012154 77 ------------LA--A--RILD----------ETGVYKNLLQEIAQRV-GAPLP--QYTTIRSGLGHLPVFTGIVELAG 127 (470)
Q Consensus 77 ------------Ls--s--~i~D----------~~~NpKS~LQE~cQK~-~l~lP--~Ye~vesGP~H~p~Ft~tV~I~G 127 (470)
+. . +|.| ....+-+.|.++.+++ ||.-- .++++..|. ....|++.| +.
T Consensus 455 ~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~n-qkse~im~~--Gk 531 (650)
T KOG4334|consen 455 GKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGN-QKSEVIMIL--GK 531 (650)
T ss_pred ccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCC-ccceeEeee--cc
Confidence 00 0 1111 1235667777777766 34211 222223332 233565554 44
Q ss_pred EEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 128 IAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 128 ~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
+. ..|++++|++++|.|.++.|+.|.-
T Consensus 532 ht-~~~~cknkr~gkQlASQ~ilq~lHP 558 (650)
T KOG4334|consen 532 HT-EEAECKNKRQGKQLASQRILQKLHP 558 (650)
T ss_pred ce-eeeeeechhHHHHHHHHHHHHHhCH
Confidence 44 4689999999999999999998753
No 29
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.18 E-value=5.4e-06 Score=87.59 Aligned_cols=72 Identities=26% Similarity=0.258 Sum_probs=65.2
Q ss_pred cCCchhhHHHHHHHHhCCC------CCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 84 ETGVYKNLLQEIAQRVGAP------LPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~------lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
...++|+.||.+|...... +|.|.+. ..|+.+++.|.+.|.++|+.+++|.|+|.|+|+..||+.||+.++.
T Consensus 425 ~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 425 DWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred hccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHh
Confidence 3568999999999888654 7888887 7899999999999999999999999999999999999999999875
No 30
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.08 E-value=3.8e-06 Score=94.83 Aligned_cols=158 Identities=22% Similarity=0.220 Sum_probs=124.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC--------
Q 012154 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP-------- 73 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p-------- 73 (470)
-|+.|..||.|+... |.|++..+|++...+|.|.|.+.+..+..-|...+||+|+.+||+...++|...+.
T Consensus 3 ~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~ 81 (1282)
T KOG0921|consen 3 VKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT 81 (1282)
T ss_pred HHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence 378999999999876 99999988999999999999999988754456778999999999999999975432
Q ss_pred --CCc-------------------------------cc-------------------------------cccc-------
Q 012154 74 --SPS-------------------------------LA-------------------------------ARIL------- 82 (470)
Q Consensus 74 --S~s-------------------------------Ls-------------------------------s~i~------- 82 (470)
+.+ +. +...
T Consensus 82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~ih 161 (1282)
T KOG0921|consen 82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEIH 161 (1282)
T ss_pred cccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCcccc
Confidence 000 00 0000
Q ss_pred --ccCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEEC-----CEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 83 --DETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELA-----GIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 83 --D~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~-----G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
+...|.|..|+++-|++.... .|+.+..|++|.+.|+.+..+- -.....+.|++||.|+...|...+..|-+
T Consensus 162 g~wt~eN~K~~ln~~~q~~~~~~-~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~h 240 (1282)
T KOG0921|consen 162 GNWTMENAKKALNEYLQKMRIQD-NYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLFH 240 (1282)
T ss_pred CCCCcchhHHHHhHHHhhhhhcc-ccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHHH
Confidence 124588999999999999844 6888888999999999886653 22344578999999999999999998888
Q ss_pred hhcccC
Q 012154 156 LAKETA 161 (470)
Q Consensus 156 ~~~e~~ 161 (470)
+.....
T Consensus 241 l~~~~~ 246 (1282)
T KOG0921|consen 241 LNVMES 246 (1282)
T ss_pred Hhhhhh
Confidence 776443
No 31
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=97.95 E-value=2.2e-05 Score=83.08 Aligned_cols=69 Identities=29% Similarity=0.458 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHcCC------CCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 2 YKNQLQELAQRSCF------NLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 2 yKS~LQElcQK~g~------~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
+|+.||.+|....- .+|.|.+. ..||.+++.|++.|+++|+.+++| .|++-|+|+-.||+.||+.+...
T Consensus 429 pkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~-~G~nik~Ae~rAA~~ALe~~~~d 504 (533)
T KOG1817|consen 429 PKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATG-VGSNIKQAEMRAAMQALENLKMD 504 (533)
T ss_pred cHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeec-cCchHhHHHHHHHHHHHHHHHhh
Confidence 68999999988643 46888888 789999999999999999999995 99999999999999999999863
No 32
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=97.79 E-value=6.3e-05 Score=81.68 Aligned_cols=64 Identities=31% Similarity=0.427 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG 72 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~ 72 (470)
+.+.|+||++ -+.|++. ..|+.|.+.|.+.|.|||..|.. | |+|||+|++.||..||+.|....
T Consensus 92 pv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~-~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 92 PVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEG-G-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred chHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccC-C-CcchHHHHHHHHHHHHHHHHhcc
Confidence 4578999998 3688888 88999999999999999999864 5 99999999999999999998653
No 33
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=97.35 E-value=0.00018 Score=77.29 Aligned_cols=73 Identities=19% Similarity=0.121 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhccc
Q 012154 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKET 160 (470)
Q Consensus 87 NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~e~ 160 (470)
..+=.|+||+|+....+|.|++.+.- ...-.|...|.+++..||.|.|.|||.||..||+.+|+.|--.....
T Consensus 376 s~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~ 448 (650)
T KOG4334|consen 376 SKVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVS 448 (650)
T ss_pred eeeehHHHHHHHHhhhcceeehhhcc-CCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhhhc
Confidence 34568999999999999999987432 23457999999999999999999999999999999999996554433
No 34
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0021 Score=65.90 Aligned_cols=73 Identities=22% Similarity=0.193 Sum_probs=65.7
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccC-CCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSG-LGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esG-P~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
..++...|-++|+++++.-|+|.+. ++| ....+.|.+.+.-+.+.+|.|.|.|-|.|++.||..||..|-...
T Consensus 231 l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~t 305 (333)
T KOG3769|consen 231 LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHT 305 (333)
T ss_pred ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 4589999999999999999999998 555 467789999999999999999999999999999999999987655
No 35
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0017 Score=66.44 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeC-CCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REG-PDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeG-P~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
+..+|-++|+++|+.-|+|.+. +.| ....+.|.+.++-|.+.+|.| .|.|-|.|++.||.+||..+=..
T Consensus 234 P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG-~Gesl~~A~e~AA~dAL~k~y~~ 304 (333)
T KOG3769|consen 234 PRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQG-QGESLKLAEEQAARDALIKLYDH 304 (333)
T ss_pred hHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccC-cchHHHHHHHHHHHHHHHHHHcC
Confidence 4578999999999999999998 555 457799999999999999985 99999999999999999998654
No 36
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=96.65 E-value=0.0016 Score=72.72 Aligned_cols=130 Identities=24% Similarity=0.205 Sum_probs=92.9
Q ss_pred CceE------Ee-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc----------CCCC-----
Q 012154 18 PSYT------CI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR----------GPSP----- 75 (470)
Q Consensus 18 PeYe------l~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~----------~pS~----- 75 (470)
..|+ +. ..||.|.++|+++|.+||..+.. .|.|||.|+-.||.+-|.....- +.+.
T Consensus 386 LQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~a--~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~ 463 (816)
T KOG3792|consen 386 LQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAEA--EGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPE 463 (816)
T ss_pred ceeccccCCCceeccCCcccchhhhhhhhcCCcccc--CCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCC
Confidence 3788 65 78999999999999999998863 79999999999999999887321 0000
Q ss_pred -------ccc--------ccc-------c-------c---cCCchhhHHHHHHHHhCCCCCeEEee-ccC-CCCCCeEEE
Q 012154 76 -------SLA--------ARI-------L-------D---ETGVYKNLLQEIAQRVGAPLPQYTTI-RSG-LGHLPVFTG 121 (470)
Q Consensus 76 -------sLs--------s~i-------~-------D---~~~NpKS~LQE~cQK~~l~lP~Ye~v-esG-P~H~p~Ft~ 121 (470)
+.. +.+ . . ...+....|+|- +.. -.|++. +.| -.|+++|..
T Consensus 464 ~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek---~rg--~k~El~set~~gs~~~R~v~ 538 (816)
T KOG3792|consen 464 PKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK---RRG--DKYELPSETGTGSHDKRFVK 538 (816)
T ss_pred CCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh---ccc--cceecccccCCCCCCceeee
Confidence 000 000 0 0 122444444444 222 268876 555 789999999
Q ss_pred EEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 122 tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
.|++.|+.+ .|.+.++|-|+..|+..|++.+..
T Consensus 539 gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt~~ 571 (816)
T KOG3792|consen 539 GVMRVGILA-KGLLLNGDRAVELALLCAEKPTSG 571 (816)
T ss_pred eeeeeehhh-ccccccchHHHHHHHHhccCcccc
Confidence 999999997 489999999999998888765533
No 37
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.30 E-value=0.014 Score=49.43 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=44.5
Q ss_pred hhHHHHHHHHhCC-----CCCeEEeeccCCCCCCeEEEEEEECCE----EeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154 89 KNLLQEIAQRVGA-----PLPQYTTIRSGLGHLPVFTGIVELAGI----AFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158 (470)
Q Consensus 89 KS~LQE~cQK~~l-----~lP~Ye~vesGP~H~p~Ft~tV~I~G~----~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~ 158 (470)
++.|+.||++..- ..|.|++...+. .|.|+|.+-.. .+.+....||+.||+.||-.|...|..++.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ 76 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGE 76 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 5789999988642 357888774432 89999988532 244447789999999999999999988875
No 38
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.65 E-value=0.049 Score=62.96 Aligned_cols=71 Identities=25% Similarity=0.230 Sum_probs=62.5
Q ss_pred chhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeee-cccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAK 158 (470)
Q Consensus 87 NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~-G~GkSKKeAKQ~AAk~ALe~Lk~~~~ 158 (470)
|-|..|..||.++++. |.|++..+|......|.|.|.+.+..+.. |...+||.|+++||+.-.+.|....+
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk 73 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGK 73 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhcc
Confidence 5689999999999998 89999988888888999999999988653 56678999999999999999977654
No 39
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=93.74 E-value=0.12 Score=43.83 Aligned_cols=66 Identities=20% Similarity=0.100 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCC-----CCCceEEeeeCCCCCCcEEEEEEECC----EEEecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154 3 KNQLQELAQRSCF-----NLPSYTCIREGPDHAPRFKATVNFNG----EIFESPHYCSTLRQAEHSAAEVALSSLSHRGP 73 (470)
Q Consensus 3 KS~LQElcQK~g~-----~lPeYel~eeGP~H~prFtv~V~VnG----e~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p 73 (470)
.+.|+.||++..- ..|.|.+...+. .|.|+|.+-. ..+ .|..-.|||.||+.||-.|...|-+.|.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i-~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ 76 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSI-EGPPMRSKKLAKRSAAFEACKKLHEAGE 76 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--E-EEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeE-EccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 5789999998532 248888885442 8999999842 112 2235789999999999999999987654
No 40
>PF14954 LIX1: Limb expression 1
Probab=91.98 E-value=0.38 Score=47.87 Aligned_cols=68 Identities=26% Similarity=0.220 Sum_probs=48.2
Q ss_pred cCCchhhHHHHHHHHh---CCCCCeEEee--ccCCCCCCeEEEEEEECCEE-eee-cccCCHHHHHHHHHHHHHH
Q 012154 84 ETGVYKNLLQEIAQRV---GAPLPQYTTI--RSGLGHLPVFTGIVELAGIA-FTG-EPAKNKKQAEKNAAMAAWT 151 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~---~l~lP~Ye~v--esGP~H~p~Ft~tV~I~G~~-f~~-G~GkSKKeAKQ~AAk~ALe 151 (470)
...|-+..||||=|.. +..++.=.++ ++.|...+-|.|-|++-|-. ||. -.+.||.+|++.||+.||.
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALm 93 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALM 93 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHH
Confidence 4568899999987654 2232211111 45566678899999997654 443 4789999999999999985
No 41
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=86.26 E-value=0.25 Score=53.24 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.|..|.+||-+.+..-|.|++... .+..|...++++|..|.++-+..++|.|+|.||..+|......
T Consensus 377 ~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~ 443 (477)
T KOG2334|consen 377 PKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLW 443 (477)
T ss_pred HHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcc
Confidence 588999999999988899999843 4789999999999999887677899999999999999987654
No 42
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=85.96 E-value=0.41 Score=51.63 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=60.0
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeec-ccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGE-PAKNKKQAEKNAAMAAWTSLKQLAK 158 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G-~GkSKKeAKQ~AAk~ALe~Lk~~~~ 158 (470)
...+|..|.+||.+.+..-|.|++++. -+..|...+.++|+.|..+ +-.+||.|+|.||..+|........
T Consensus 374 ~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~e~ 445 (477)
T KOG2334|consen 374 WDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLWEA 445 (477)
T ss_pred CCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcchh
Confidence 357899999999999999999999853 3568999999999998776 5579999999999999887755543
No 43
>PF14954 LIX1: Limb expression 1
Probab=82.68 E-value=2.5 Score=42.31 Aligned_cols=71 Identities=30% Similarity=0.388 Sum_probs=46.9
Q ss_pred HHHHHHHHH---cCCCCCceEEe--eeCCCCCCcEEEEEEECCEE-EecccccCCccHHHHHHHHHHHHH-hhccCCC
Q 012154 4 NQLQELAQR---SCFNLPSYTCI--REGPDHAPRFKATVNFNGEI-FESPHYCSTLRQAEHSAAEVALSS-LSHRGPS 74 (470)
Q Consensus 4 S~LQElcQK---~g~~lPeYel~--eeGP~H~prFtv~V~VnGe~-~gsGG~GsSKKeAEq~AAk~AL~~-L~~~~pS 74 (470)
..||||=|. +|..++.=.+. +..|...+.|.|=|++-|-. ||.--.+.||-+|++.||+.||-. +-++.|+
T Consensus 25 ~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvfNEhPs 102 (252)
T PF14954_consen 25 EALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVFNEHPS 102 (252)
T ss_pred HHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHHhcCCc
Confidence 468887654 33333322222 45566788999999996644 443235889999999999999866 3344443
No 44
>PRK00394 transcription factor; Reviewed
Probab=70.49 E-value=79 Score=30.37 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=83.5
Q ss_pred HHHHHHHcCCCCCceEEeee-C---CCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCCc--ccc
Q 012154 6 LQELAQRSCFNLPSYTCIRE-G---PDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPS--LAA 79 (470)
Q Consensus 6 LQElcQK~g~~lPeYel~ee-G---P~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~s--Lss 79 (470)
|.+++.... . -+|+-... | .-++|.=++.++-+|+.+.+| ++|..+|+. |++..++.|...+-... ...
T Consensus 18 L~~la~~~~-n-~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG--a~S~~~a~~-a~~~~~~~l~~~g~~~~~~~~~ 92 (179)
T PRK00394 18 LEKVAEDLP-N-AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG--AKSVEDLHE-AVKIIIKKLKELGIKVIDEPEI 92 (179)
T ss_pred HHHHHhhCC-C-ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc--cCCHHHHHH-HHHHHHHHHHHcCCCccCCCce
Confidence 566665543 2 36654311 1 124677788888899998775 688888887 67777777776543211 111
Q ss_pred cccc----cCCchhhHHHHHHHHhCCCCCeEEeec-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHH
Q 012154 80 RILD----ETGVYKNLLQEIAQRVGAPLPQYTTIR-SGL---GHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWT 151 (470)
Q Consensus 80 ~i~D----~~~NpKS~LQE~cQK~~l~lP~Ye~ve-sGP---~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe 151 (470)
.+.+ -+....=.|.+++...+..--.|+=.. -|- -.++.-++.+.-.|+.+..| ++|..++++ |.+..+.
T Consensus 93 ~i~NiVas~~l~~~i~L~~la~~~~~~~~~YePe~fPglvyR~~~pk~~~lIF~SGKvvitG-aks~~~~~~-a~~~i~~ 170 (179)
T PRK00394 93 KVQNIVASADLGVELNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLVITG-AKSEEDAEK-AVEKILE 170 (179)
T ss_pred EEEEEEEEEEcCCeEcHHHHHHhcCcCCcEECcccCceEEEEecCCcEEEEEEcCCEEEEEe-cCCHHHHHH-HHHHHHH
Confidence 1111 111222347777766543334555221 010 12356677788899987665 778888877 4566667
Q ss_pred HHHhhh
Q 012154 152 SLKQLA 157 (470)
Q Consensus 152 ~Lk~~~ 157 (470)
.|+...
T Consensus 171 ~l~~~g 176 (179)
T PRK00394 171 KLEELG 176 (179)
T ss_pred HHHHcC
Confidence 676544
No 45
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=67.55 E-value=5.3 Score=45.72 Aligned_cols=62 Identities=23% Similarity=0.085 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCCCceEEe-eeC-CCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhh
Q 012154 4 NQLQELAQRSCFNLPSYTCI-REG-PDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLS 69 (470)
Q Consensus 4 S~LQElcQK~g~~lPeYel~-eeG-P~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~ 69 (470)
....|+..+++. -.|++. +.| -.|+++|...|.+.|+.+. |.|.+++.|+..|+-.|++.+.
T Consensus 507 ~vsd~L~Ek~rg--~k~El~set~~gs~~~R~v~gV~rvG~~ak--G~~~~gd~a~~~a~Lca~~pt~ 570 (816)
T KOG3792|consen 507 LVSDELAEKRRG--DKYELPSETGTGSHDKRFVKGVMRVGILAK--GLLLNGDRAVELALLCAEKPTS 570 (816)
T ss_pred chhHHHhhhccc--cceecccccCCCCCCceeeeeeeeeehhhc--cccccchHHHHHHHHhccCccc
Confidence 344566666543 278887 555 7899999999999999874 5799999999999988876653
No 46
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.92 E-value=2e+02 Score=32.08 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=16.7
Q ss_pred CCCCCceeeeccccccCCCCCCCCCCCCccccCCCc
Q 012154 288 GIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAV 323 (470)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (470)
.-.|++.+=-+.|-++.||. .||+..-+||-
T Consensus 435 ~~~p~~~~g~~~P~~~mpp~-----~P~~~~pppP~ 465 (483)
T KOG2236|consen 435 ESNPPANFGQANPFNQMPPA-----YPHQQSPPPPP 465 (483)
T ss_pred CCCCcccccccCccccCCCC-----CccccCCCCCC
Confidence 33445555556666666652 35555555553
No 47
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=54.23 E-value=2e+02 Score=27.56 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=78.8
Q ss_pred HHHHHHHcCCCCCceEEee-eC---CCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCCc--ccc
Q 012154 6 LQELAQRSCFNLPSYTCIR-EG---PDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPS--LAA 79 (470)
Q Consensus 6 LQElcQK~g~~lPeYel~e-eG---P~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~s--Lss 79 (470)
|.+++.... . -+|+-.. .| .-+++.=++.++-+|+.+.+| .+|..+|+. |++..++.|...+-... ...
T Consensus 19 L~~la~~~~-n-~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tG--aks~~~a~~-a~~~~~~~L~~~g~~~~~~~~~ 93 (174)
T cd04518 19 LEKVAAELP-N-AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTG--AKSVEDLHR-AVKEIIKKLKDYGIKVIEKPEI 93 (174)
T ss_pred HHHHHhhCC-C-cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEc--cCCHHHHHH-HHHHHHHHHHhcCCCccCCCce
Confidence 666766632 2 3565421 10 114577788888899998775 678888887 67777777776552111 011
Q ss_pred cccc----cCCchhhHHHHHHHHhCCCCCeEEeec-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHH
Q 012154 80 RILD----ETGVYKNLLQEIAQRVGAPLPQYTTIR-SGL---GHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWT 151 (470)
Q Consensus 80 ~i~D----~~~NpKS~LQE~cQK~~l~lP~Ye~ve-sGP---~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe 151 (470)
.+.+ -+....=.|.+++.... --+|+=.+ -|- -..+.-++.+.-.|+.+..| ++|..++++ |.+..+.
T Consensus 94 ~i~NIVas~~l~~~i~L~~la~~~~--~~~YePe~fpglvyR~~~pk~~~lIF~SGKvvitG-aks~~~~~~-a~~~i~~ 169 (174)
T cd04518 94 KVQNIVASADLGREVNLDAIAIGLP--NAEYEPEQFPGLVYRLDEPKVVLLLFSSGKMVITG-AKSEEDAKR-AVEKLLS 169 (174)
T ss_pred EEEEEEEEEEcCCccCHHHHHhhCC--CCccCcccCceEEEEecCCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHH
Confidence 1111 01122234677776544 13454211 010 12345677788899987665 788888877 4555656
Q ss_pred HHHh
Q 012154 152 SLKQ 155 (470)
Q Consensus 152 ~Lk~ 155 (470)
.|+.
T Consensus 170 ~l~~ 173 (174)
T cd04518 170 RLKE 173 (174)
T ss_pred HHhh
Confidence 5543
No 48
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=36.37 E-value=3.9e+02 Score=25.48 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=77.2
Q ss_pred HHHHHHHcCCCCCceEEee-eC---CCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCC-cc-cc
Q 012154 6 LQELAQRSCFNLPSYTCIR-EG---PDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSP-SL-AA 79 (470)
Q Consensus 6 LQElcQK~g~~lPeYel~e-eG---P~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~-sL-ss 79 (470)
|.+++.... . -+|+-.+ .| .-.++.=++.++-+|+.+.+| ++|..+|+. |++..+..|.+.+-.. .. ..
T Consensus 19 L~~la~~~~-n-~~YePe~fpgli~R~~~P~~t~lIf~sGKivitG--aks~~~~~~-a~~~~~~~L~~~g~~~~~~~~~ 93 (174)
T cd00652 19 LRKIALAAR-N-AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITG--AKSEEDAKL-AARKYARILQKLGFPVEKFPEF 93 (174)
T ss_pred HHHHHhhCC-C-cEECCCccceEEEEcCCCcEEEEEECCCEEEEEe--cCCHHHHHH-HHHHHHHHHHHcCCCccccCce
Confidence 667776643 2 3666431 11 113567788888899998765 578888887 6677777776654221 11 00
Q ss_pred ccc----ccCCchhhHHHHHHHHhCCCCCeEEeec-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHH
Q 012154 80 RIL----DETGVYKNLLQEIAQRVGAPLPQYTTIR-SGL---GHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWT 151 (470)
Q Consensus 80 ~i~----D~~~NpKS~LQE~cQK~~l~lP~Ye~ve-sGP---~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe 151 (470)
.+. .-+.++.=.|..++...+- --.|+=.. -|- -..+.-++.+.-.|+.+-.| ++|..++++. .+..+.
T Consensus 94 ~v~NIvas~~l~~~i~L~~la~~~~~-~~~YePe~fpgli~r~~~pk~t~lIF~sGkvvitG-aks~~~~~~a-~~~i~~ 170 (174)
T cd00652 94 KVQNIVASCDLGFPIRLEELALKHPE-NASYEPELFPGLIYRMDEPKVVLLIFVSGKIVITG-AKSREDIYEA-VEKIYP 170 (174)
T ss_pred EEEEEEEEEECCCcccHHHHHhhhhc-ccEECCccCceEEEEecCCcEEEEEEcCCEEEEEe-cCCHHHHHHH-HHHHHH
Confidence 110 0112334457777766541 12344211 010 01245667777789886654 6778888774 444444
Q ss_pred HH
Q 012154 152 SL 153 (470)
Q Consensus 152 ~L 153 (470)
.|
T Consensus 171 ~L 172 (174)
T cd00652 171 IL 172 (174)
T ss_pred HH
Confidence 44
No 49
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=33.27 E-value=56 Score=26.66 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=23.3
Q ss_pred EeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 129 AFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 129 ~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
.++.|.|.+.+.|+++|-..+.+.|...-
T Consensus 14 l~a~G~~~~~~~A~~~A~~~la~~i~~~v 42 (92)
T PF02169_consen 14 LYAVGSGSSREQAKQDALANLAEQISVVV 42 (92)
T ss_pred EEEEEcccChHHHHHHHHHHHHHheeEEE
Confidence 46779999999999999888888665444
No 50
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=27.49 E-value=5.6e+02 Score=24.57 Aligned_cols=131 Identities=17% Similarity=0.186 Sum_probs=72.2
Q ss_pred HHHHHHHcCCCCCceEEee-e---CCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCCccc-cc
Q 012154 6 LQELAQRSCFNLPSYTCIR-E---GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSLA-AR 80 (470)
Q Consensus 6 LQElcQK~g~~lPeYel~e-e---GP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~sLs-s~ 80 (470)
|.+++.... . -+|+-.. . ..-+++.-++.++-+|+.+.+| ++|..+|+. |++..++.|.+.+-..... ..
T Consensus 19 L~~la~~~~-n-~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG--aks~e~a~~-a~~~i~~~L~~~g~~~~~~~~~ 93 (174)
T cd04516 19 LKKIALRAR-N-AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG--AKSEDDSKL-AARKYARIIQKLGFPAKFTDFK 93 (174)
T ss_pred HHHHHhhCC-C-CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe--cCCHHHHHH-HHHHHHHHHHHcCCCCCCCceE
Confidence 667775542 2 3665431 1 1125678888999999998775 688888887 5666667776654221110 01
Q ss_pred ---cc-ccCCchhhHHHHHHHHhCCCCCeEEeec-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHH
Q 012154 81 ---IL-DETGVYKNLLQEIAQRVGAPLPQYTTIR-SGL---GHLPVFTGIVELAGIAFTGEPAKNKKQAEK 143 (470)
Q Consensus 81 ---i~-D~~~NpKS~LQE~cQK~~l~lP~Ye~ve-sGP---~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ 143 (470)
+. --+..+.=.|.+++..+ ...-.|+-.. -|- -..+.-++.+...|+.+-.| ++|..++++
T Consensus 94 v~Nivat~~l~~~i~L~~la~~~-~~~~~YePE~fPgliyr~~~pk~~~liF~sGkvvitG-aks~~~~~~ 162 (174)
T cd04516 94 IQNIVGSCDVKFPIRLEGLAHAH-KQFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTG-AKSREEIYQ 162 (174)
T ss_pred EEEEEEEEECCCcccHHHHHHhC-hhccEeCCccCceEEEEecCCcEEEEEeCCCEEEEEe-cCCHHHHHH
Confidence 10 01223344577777633 2223455221 110 01245567777789886654 666666665
No 51
>COG1944 Uncharacterized conserved protein [Function unknown]
Probab=24.89 E-value=2.3e+02 Score=30.89 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHhCCCCCeEEeeccCCC--CCCeEEEEE-EECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 88 YKNLLQEIAQRVGAPLPQYTTIRSGLG--HLPVFTGIV-ELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 88 pKS~LQE~cQK~~l~lP~Ye~vesGP~--H~p~Ft~tV-~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
-...+|.++.+.|+.- ..++. +-+ .-|.|.... .-.+..+..|.|.||++|+-.|..++++.+.-..
T Consensus 19 t~~~~q~~l~~~gitr-I~~~t--~Ld~~gIPv~~a~rp~~~~~~~~~GKGat~~~A~vSAimE~~Er~sAe~ 88 (398)
T COG1944 19 TLAAFQPLLAALGITR-IEDIT--WLDRLGIPVVWAVRPRALGLSVSQGKGATKAAARVSALMEALERLSAEY 88 (398)
T ss_pred HHHHHHHHHHhcCcee-eeeee--ccccCCCceEEEeeeccccceeecCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 4567888888877652 12222 222 234443332 2235667789999999999999999999885443
No 52
>TIGR03549 conserved hypothetical protein TIGR03549. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. This family has an OsmC-like N-terminal domain. It shares a central domain, modeled by pfam02624 and TIGR00702, with other families of smaller proteins. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may be fortuitous.
Probab=24.44 E-value=8.9e+02 Score=28.56 Aligned_cols=66 Identities=20% Similarity=0.123 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHhCCCCCeEEeeccCCCCCC-eEEEEEEE-CC-EEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154 87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLP-VFTGIVEL-AG-IAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156 (470)
Q Consensus 87 NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p-~Ft~tV~I-~G-~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~ 156 (470)
+-+..+++.....|+.+- +.++-..-+ .|.+.+.= +. ..++.|.|.||+.|+-.|-.+..+.|...
T Consensus 160 eTI~~~~~~L~~lg~~i~----~~s~~~~vp~~~Sv~~~d~~~~~~~tnGKGas~~~AlASAlgE~~ERls~n 228 (718)
T TIGR03549 160 QTIANMTAILADLGMKIE----IASWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNCN 228 (718)
T ss_pred HHHHHHHHHHHHcCCCeE----EeeccCCCCcEEEEEecccCCCcccCCCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 457788888888777653 223322223 33333331 11 22566999999999999999999999544
No 53
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=23.68 E-value=2.5e+02 Score=20.75 Aligned_cols=18 Identities=39% Similarity=0.281 Sum_probs=13.0
Q ss_pred ecccCCHHHHHHHHHHHH
Q 012154 132 GEPAKNKKQAEKNAAMAA 149 (470)
Q Consensus 132 ~G~GkSKKeAKQ~AAk~A 149 (470)
..-..||++|+..+++..
T Consensus 21 k~GF~TkkeA~~~~~~~~ 38 (46)
T PF14657_consen 21 KRGFKTKKEAEKALAKIE 38 (46)
T ss_pred cCCCCcHHHHHHHHHHHH
Confidence 344789999999776633
Done!