Query 012154
Match_columns 470
No_of_seqs 270 out of 1955
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:49:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qu6_A Protein kinase PKR; dsR 100.0 1.1E-32 3.9E-37 253.7 13.8 153 1-156 14-173 (179)
2 2yt4_A Protein DGCR8; DSRBD, R 100.0 4.6E-29 1.6E-33 239.4 14.8 148 1-155 23-198 (232)
3 2l3j_A Double-stranded RNA-spe 99.9 8.6E-26 2.9E-30 216.8 18.3 146 1-156 5-226 (236)
4 1di2_A XLRBPA, double stranded 99.8 2E-19 7E-24 142.1 8.1 67 1-69 1-68 (69)
5 3adg_A F21M12.9 protein; HYL1, 99.8 1.1E-18 3.7E-23 139.5 10.2 70 85-154 2-72 (73)
6 3adg_A F21M12.9 protein; HYL1, 99.8 1.4E-18 4.7E-23 138.9 9.7 68 1-69 4-72 (73)
7 3adj_A F21M12.9 protein; HYL1, 99.8 1.1E-18 3.9E-23 140.7 9.2 71 85-155 3-74 (76)
8 3adj_A F21M12.9 protein; HYL1, 99.8 1.5E-18 5.2E-23 140.0 9.1 69 1-70 5-74 (76)
9 3adl_A RISC-loading complex su 99.8 3.5E-18 1.2E-22 142.4 10.4 74 83-157 12-86 (88)
10 1di2_A XLRBPA, double stranded 99.7 2.6E-18 8.8E-23 135.8 8.8 66 88-154 2-68 (69)
11 2cpn_A TAR RNA-binding protein 99.7 8E-18 2.7E-22 140.4 9.9 71 84-155 14-85 (89)
12 1uhz_A Staufen (RNA binding pr 99.7 1.3E-17 4.5E-22 139.1 9.9 69 85-154 5-74 (89)
13 2dix_A Interferon-inducible do 99.7 1.6E-17 5.4E-22 136.8 10.2 73 84-158 6-79 (84)
14 3adl_A RISC-loading complex su 99.7 1.3E-17 4.3E-22 139.0 9.0 69 1-71 16-85 (88)
15 1ekz_A DSRBDIII, maternal effe 99.7 3.7E-18 1.3E-22 137.4 5.0 70 84-155 5-75 (76)
16 2cpn_A TAR RNA-binding protein 99.7 1.6E-17 5.4E-22 138.6 9.0 69 1-71 17-86 (89)
17 1uhz_A Staufen (RNA binding pr 99.7 1.7E-17 5.8E-22 138.4 9.1 69 1-71 7-76 (89)
18 2khx_A Ribonuclease 3; drosha, 99.7 8.8E-18 3E-22 139.0 7.0 71 86-156 1-77 (85)
19 2l2n_A Hyponastic leave 1; DSR 99.7 3.5E-17 1.2E-21 139.8 9.9 75 83-157 14-89 (103)
20 1x49_A Interferon-induced, dou 99.7 2.6E-17 8.9E-22 139.4 8.9 73 84-157 12-85 (97)
21 2khx_A Ribonuclease 3; drosha, 99.7 1.1E-17 3.7E-22 138.5 6.5 70 1-71 2-77 (85)
22 2l2n_A Hyponastic leave 1; DSR 99.7 3.2E-17 1.1E-21 140.1 8.9 72 1-73 18-90 (103)
23 2dix_A Interferon-inducible do 99.7 4.6E-17 1.6E-21 134.1 9.5 68 1-71 9-77 (84)
24 2b7t_A Double-stranded RNA-spe 99.7 3E-17 1E-21 131.4 8.1 69 85-156 3-72 (73)
25 1ekz_A DSRBDIII, maternal effe 99.7 1.2E-17 4.1E-22 134.4 5.5 67 1-70 8-75 (76)
26 1x48_A Interferon-induced, dou 99.7 6.7E-17 2.3E-21 134.4 9.9 74 85-160 5-79 (88)
27 3llh_A RISC-loading complex su 99.7 6.2E-17 2.1E-21 134.9 8.9 72 84-157 12-84 (90)
28 3llh_A RISC-loading complex su 99.7 7.4E-17 2.5E-21 134.4 7.9 68 1-71 15-83 (90)
29 1whq_A RNA helicase A; double- 99.7 7E-17 2.4E-21 137.3 7.6 72 85-157 5-77 (99)
30 1x49_A Interferon-induced, dou 99.7 5.7E-17 1.9E-21 137.3 6.9 69 2-72 16-85 (97)
31 2b7t_A Double-stranded RNA-spe 99.7 8.8E-17 3E-21 128.6 7.3 66 1-70 5-71 (73)
32 1whq_A RNA helicase A; double- 99.7 6E-17 2E-21 137.7 5.9 70 1-72 7-77 (99)
33 1x48_A Interferon-induced, dou 99.7 1.6E-16 5.5E-21 132.1 7.6 69 1-72 7-76 (88)
34 1x47_A DGCR8 protein; structur 99.6 5.1E-16 1.7E-20 131.6 10.6 74 84-159 14-88 (98)
35 2dmy_A Spermatid perinuclear R 99.6 4.4E-16 1.5E-20 131.6 9.9 69 84-155 14-83 (97)
36 1uil_A Double-stranded RNA-bin 99.6 3.5E-16 1.2E-20 135.8 9.3 72 86-158 26-102 (113)
37 1t4n_A Ribonuclease III; DSRBD 99.6 1.1E-16 3.7E-21 135.7 5.2 73 85-158 5-78 (94)
38 1uil_A Double-stranded RNA-bin 99.6 4.3E-16 1.5E-20 135.3 8.6 69 2-72 28-101 (113)
39 2l33_A Interleukin enhancer-bi 99.6 3.4E-16 1.2E-20 131.6 7.3 69 1-73 15-84 (91)
40 2dmy_A Spermatid perinuclear R 99.6 6.7E-16 2.3E-20 130.5 8.2 67 1-71 17-84 (97)
41 1t4n_A Ribonuclease III; DSRBD 99.6 2.2E-16 7.6E-21 133.9 4.6 67 2-70 8-75 (94)
42 2l33_A Interleukin enhancer-bi 99.6 9.5E-16 3.2E-20 128.9 8.3 68 85-155 13-81 (91)
43 1whn_A Hypothetical protein ri 99.6 1.4E-15 4.9E-20 135.0 9.8 71 84-156 24-95 (128)
44 1x47_A DGCR8 protein; structur 99.6 1.1E-15 3.6E-20 129.6 8.4 68 1-71 17-85 (98)
45 1t4o_A Ribonuclease III; RNT1P 99.6 5.8E-16 2E-20 136.0 6.3 75 85-160 7-82 (117)
46 1whn_A Hypothetical protein ri 99.6 2.6E-15 8.8E-20 133.4 8.4 68 1-71 27-95 (128)
47 1t4o_A Ribonuclease III; RNT1P 99.6 1.1E-15 3.7E-20 134.3 5.1 67 2-70 10-77 (117)
48 2ljh_A Double-stranded RNA-spe 99.6 3.1E-15 1.1E-19 130.6 7.1 69 84-158 35-104 (114)
49 2b7v_A Double-stranded RNA-spe 99.6 1.1E-14 3.8E-19 115.7 8.7 66 85-156 3-69 (71)
50 2ljh_A Double-stranded RNA-spe 99.5 5.5E-15 1.9E-19 129.0 6.5 64 1-71 38-102 (114)
51 1qu6_A Protein kinase PKR; dsR 99.5 6.2E-15 2.1E-19 135.5 6.9 72 85-157 12-84 (179)
52 3p1x_A Interleukin enhancer-bi 99.5 3.3E-14 1.1E-18 114.7 7.7 68 2-73 6-74 (75)
53 2b7v_A Double-stranded RNA-spe 99.5 3.8E-14 1.3E-18 112.6 6.9 63 1-70 5-68 (71)
54 3p1x_A Interleukin enhancer-bi 99.5 9.1E-14 3.1E-18 112.2 8.0 65 88-155 6-71 (75)
55 2nug_A Ribonuclease III, RNAse 99.5 6.4E-14 2.2E-18 132.0 7.9 69 85-154 149-218 (221)
56 1o0w_A Ribonuclease III, RNAse 99.4 1.4E-13 4.8E-18 132.6 9.0 71 85-155 178-249 (252)
57 2nug_A Ribonuclease III, RNAse 99.4 8.7E-14 3E-18 131.1 6.9 68 1-70 151-219 (221)
58 1o0w_A Ribonuclease III, RNAse 99.4 1.5E-13 5E-18 132.4 8.0 70 1-71 180-250 (252)
59 2yt4_A Protein DGCR8; DSRBD, R 99.4 4.7E-13 1.6E-17 128.4 10.2 71 84-156 20-91 (232)
60 3n3w_A Ribonuclease III; nucle 99.4 5.9E-14 2E-18 135.5 0.0 72 84-155 175-247 (248)
61 2a11_A Ribonuclease III, RNAse 99.3 8.2E-14 2.8E-18 133.0 0.0 73 85-157 161-233 (242)
62 3n3w_A Ribonuclease III; nucle 99.3 1.1E-13 3.8E-18 133.5 0.0 68 2-70 179-247 (248)
63 2a11_A Ribonuclease III, RNAse 99.3 1.4E-13 4.8E-18 131.4 0.0 70 2-72 164-233 (242)
64 2l3j_A Double-stranded RNA-spe 99.2 4.4E-11 1.5E-15 114.8 8.9 69 86-157 4-73 (236)
65 3rv0_A K. polysporus DCR1; RNA 98.9 1.4E-10 4.7E-15 117.4 0.0 69 85-158 253-323 (341)
66 3rv0_A K. polysporus DCR1; RNA 98.9 2.7E-10 9.3E-15 115.2 0.0 64 2-71 256-321 (341)
67 3c4b_A Endoribonuclease dicer; 98.6 5.2E-08 1.8E-12 93.8 6.4 67 86-155 197-263 (265)
68 3c4b_A Endoribonuclease dicer; 98.5 6.6E-08 2.3E-12 93.1 5.1 66 2-71 199-264 (265)
69 2kou_A Dicer-like protein 4; A 95.1 0.032 1.1E-06 47.4 5.8 71 86-158 4-83 (102)
70 2kou_A Dicer-like protein 4; A 90.1 0.43 1.5E-05 40.4 5.5 67 3-73 7-83 (102)
71 3htx_A HEN1; HEN1, small RNA m 84.7 1.1 3.8E-05 50.9 6.2 41 118-158 58-98 (950)
72 3htx_A HEN1; HEN1, small RNA m 83.5 1 3.5E-05 51.2 5.2 39 32-71 58-96 (950)
73 2db2_A KIAA0890 protein; DSRM 81.9 2.2 7.7E-05 37.4 5.7 76 81-160 12-94 (119)
74 2db2_A KIAA0890 protein; DSRM 62.6 8.6 0.00029 33.8 4.6 65 2-72 19-91 (119)
75 2z8u_A Tata-box-binding protei 38.4 2.1E+02 0.007 26.5 10.1 142 6-156 30-185 (188)
76 1mp9_A Tata-binding protein; t 32.1 2.3E+02 0.0077 26.4 9.4 144 6-158 30-187 (198)
77 1ais_A TBP, protein (tata-bind 30.2 2E+02 0.0068 26.4 8.5 120 29-155 51-180 (182)
78 3eik_A Tata-box-binding protei 21.1 4.7E+02 0.016 24.9 9.4 119 30-154 86-213 (218)
No 1
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.98 E-value=1.1e-32 Score=253.69 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=133.4
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCCc---
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPS--- 76 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~s--- 76 (470)
.||+.||||||++++. |.|+++ +.||+|++.|+++|+|+|..++.| .|+|||+|||+||+.||+.|.......+
T Consensus 14 n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~~ 91 (179)
T 1qu6_A 14 FFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEG-EGRSKKEAKNAAAKLAVEILNKEKKAVSPLL 91 (179)
T ss_dssp SHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEE-ECCSSHHHHHHHHHHHHHHHHSCCSCCSCSS
T ss_pred CHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEec-CCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence 4899999999999987 899987 789999999999999999888774 9999999999999999999987543211
Q ss_pred --ccccc-cccCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154 77 --LAARI-LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL 153 (470)
Q Consensus 77 --Lss~i-~D~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L 153 (470)
+.... .....||++.||||||++++.+ .|++.++|++|.+.|+|+|.|+|+.|+.|.|.|||+||++||+.||..|
T Consensus 92 ~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L 170 (179)
T 1qu6_A 92 LTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 170 (179)
T ss_dssp CCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHH
Confidence 00111 1145799999999999999987 8998889999999999999999999888999999999999999999999
Q ss_pred Hhh
Q 012154 154 KQL 156 (470)
Q Consensus 154 k~~ 156 (470)
...
T Consensus 171 ~~~ 173 (179)
T 1qu6_A 171 LSE 173 (179)
T ss_dssp HHC
T ss_pred hcc
Confidence 654
No 2
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=239.36 Aligned_cols=148 Identities=20% Similarity=0.130 Sum_probs=120.2
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCC-cc-
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSP-SL- 77 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~-sL- 77 (470)
.||+.||||||++++.+|.|+++ ++||+ +.|+++|+|+|..|+.| .|+|||+|||+||+.||..|....+.. +.
T Consensus 23 d~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~ 99 (232)
T 2yt4_A 23 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPDFVKQTSEE 99 (232)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeec-CCCCHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 48999999999999999999997 78987 99999999999999885 999999999999999999997643210 00
Q ss_pred --------c---------ccc-----cccCCchhhHHHHHHHHhCCCCCeEE--ee-ccCCCCCCeEEEEEEECCEEeee
Q 012154 78 --------A---------ARI-----LDETGVYKNLLQEIAQRVGAPLPQYT--TI-RSGLGHLPVFTGIVELAGIAFTG 132 (470)
Q Consensus 78 --------s---------s~i-----~D~~~NpKS~LQE~cQK~~l~lP~Ye--~v-esGP~H~p~Ft~tV~I~G~~f~~ 132 (470)
. ..+ .....|||+.||| ||++++.+|.|+ ++ ++|++|.+.|+|+|. +. ++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~~-~~~ 175 (232)
T 2yt4_A 100 KPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--KH-TVR 175 (232)
T ss_dssp ----CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--TE-EEE
T ss_pred ccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--EE-EEE
Confidence 0 000 0134699999999 999999999999 55 789999999999887 54 456
Q ss_pred cccCCHHHHHHHHHHHHHHHHHh
Q 012154 133 EPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 133 G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
|.|.|||+|||.||+.||..|..
T Consensus 176 G~G~sKK~Aeq~AA~~aL~~L~~ 198 (232)
T 2yt4_A 176 GWCKNKRVGKQLASQKILQLLHP 198 (232)
T ss_dssp EEESSHHHHHHHHHHHHHHHHST
T ss_pred EEeCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999964
No 3
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.94 E-value=8.6e-26 Score=216.83 Aligned_cols=146 Identities=31% Similarity=0.351 Sum_probs=121.7
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC------
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP------ 73 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p------ 73 (470)
.||+.|++|++. +.+|.|+++ ++||+|++.|+++|+|+|..+ . |.|+|||+|||+||+.||+.|.....
T Consensus 5 ~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~ 80 (236)
T 2l3j_A 5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-E-GSGPTKKKAKLHAAEKALRSFVQFPNASEAHL 80 (236)
T ss_dssp CTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-E-EEESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred CCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-E-EecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence 489999999987 357999997 789999999999999999986 5 59999999999999999999875310
Q ss_pred ------C-----Cc--------cc---c-------------------------cc---------------------cccC
Q 012154 74 ------S-----PS--------LA---A-------------------------RI---------------------LDET 85 (470)
Q Consensus 74 ------S-----~s--------Ls---s-------------------------~i---------------------~D~~ 85 (470)
. .+ +. . .+ .+..
T Consensus 81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~ 160 (236)
T 2l3j_A 81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG 160 (236)
T ss_dssp SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence 0 00 00 0 00 0023
Q ss_pred CchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154 86 GVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156 (470)
Q Consensus 86 ~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~ 156 (470)
.|||++|||| +..|.|+++ ++|++|.+.|+|+|.|+|+.+ .|.|+|||+|||+||+.||..|...
T Consensus 161 ~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 161 KNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp CCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence 6999999999 567999987 789999999999999999987 7899999999999999999999653
No 4
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.79 E-value=2e-19 Score=142.12 Aligned_cols=67 Identities=31% Similarity=0.406 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhh
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLS 69 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~ 69 (470)
|||+.||||||++++.+|.|++. ++||+|++.|+++|+|+|. ++.| .|+|||+||++||+.||..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G-~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETG-SGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999987 7899999999999999998 8874 999999999999999999986
No 5
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.77 E-value=1.1e-18 Score=139.52 Aligned_cols=70 Identities=36% Similarity=0.549 Sum_probs=66.4
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHH
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNAAMAAWTSLK 154 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~G-kSKKeAKQ~AAk~ALe~Lk 154 (470)
..|||+.||||||++++.+|.|+++.+|++|.+.|+|.|.|+|..++.|.| +|||+|||+||+.||..|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999999866999999999999999999999999 9999999999999999885
No 6
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.77 E-value=1.4e-18 Score=138.95 Aligned_cols=68 Identities=40% Similarity=0.576 Sum_probs=64.1
Q ss_pred CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEeccccc-CCccHHHHHHHHHHHHHhh
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYC-STLRQAEHSAAEVALSSLS 69 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~G-sSKKeAEq~AAk~AL~~L~ 69 (470)
.||+.||||||++++.+|.|++..+||+|++.|+++|+|+|..++.| .| +|||+||++||+.||..|.
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEee-eccCCHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999669999999999999999999885 89 9999999999999999885
No 7
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.76 E-value=1.1e-18 Score=140.72 Aligned_cols=71 Identities=38% Similarity=0.586 Sum_probs=67.1
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
..|||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||..|..
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 3699999999999999999999997 7899999999999999999999999999999999999999999863
No 8
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.76 E-value=1.5e-18 Score=140.01 Aligned_cols=69 Identities=32% Similarity=0.463 Sum_probs=64.8
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
+||+.||||||++++.+|.|+++ ++||+|++.|+++|+|+|..++.| .|+|||+||++||+.||..|..
T Consensus 5 n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGA-ATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECC-CBSSHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHHHhh
Confidence 38999999999999999999997 789999999999999999999885 9999999999999999999864
No 9
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=142.37 Aligned_cols=74 Identities=26% Similarity=0.283 Sum_probs=67.7
Q ss_pred ccCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 83 DETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 83 D~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
....|||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|..+.
T Consensus 12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p 86 (88)
T 3adl_A 12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVP 86 (88)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccC
Confidence 345799999999999999999999997 7899999999999999998 8889999999999999999999997554
No 10
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.75 E-value=2.6e-18 Score=135.80 Aligned_cols=66 Identities=30% Similarity=0.308 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 012154 88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154 (470)
Q Consensus 88 pKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk 154 (470)
||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|+
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999987 7899999999999999998 8899999999999999999999985
No 11
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.73 E-value=8e-18 Score=140.36 Aligned_cols=71 Identities=27% Similarity=0.271 Sum_probs=66.8
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
...|||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|..
T Consensus 14 ~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 14 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 35699999999999999999999997 7899999999999999998 88899999999999999999999964
No 12
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.72 E-value=1.3e-17 Score=139.05 Aligned_cols=69 Identities=26% Similarity=0.230 Sum_probs=65.5
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk 154 (470)
..|||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|.
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~ 74 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLG 74 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999999997 7899999999999999997 8889999999999999999999995
No 13
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.72 E-value=1.6e-17 Score=136.84 Aligned_cols=73 Identities=26% Similarity=0.216 Sum_probs=66.7
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~ 158 (470)
...|||+.||||||+++ ..|.|+++ ++|++|.+.|+|.|.|+| .++.|.|+|||+|||+||+.||..|.....
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~ 79 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANAS 79 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcccc
Confidence 34799999999999998 68999997 789999999999999999 888899999999999999999999975543
No 14
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=139.03 Aligned_cols=69 Identities=26% Similarity=0.316 Sum_probs=63.9
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||++++.+|.|+++ ++||+|++.|+++|+|+|. ++.| .|+|||+||++||+.||..|...
T Consensus 16 d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 16 HEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHHcc
Confidence 38999999999999999999997 7899999999999999998 8874 99999999999999999999754
No 15
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.71 E-value=3.7e-18 Score=137.41 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=65.5
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
...|||+.||||||++++. |.|+++ ++|++|.+.|+|+|.|+| .++.|.|+|||+|||+||+.||..|+.
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 3469999999999999999 999987 789999999999999999 888899999999999999999999864
No 16
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.71 E-value=1.6e-17 Score=138.59 Aligned_cols=69 Identities=28% Similarity=0.322 Sum_probs=64.3
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||++++.+|.|+++ ++||+|++.|+++|+|+|. ++.| .|+|||+||++||+.||..|...
T Consensus 17 d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 17 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEe-eeCCHHHHHHHHHHHHHHHHHhh
Confidence 38999999999999999999987 7899999999999999998 8875 99999999999999999999753
No 17
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.71 E-value=1.7e-17 Score=138.39 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=64.0
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||++++.+|.|+++ ++|++|++.|+++|+|+|. ++.| .|+|||+||++||+.||..|...
T Consensus 7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 76 (89)
T 1uhz_A 7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATG-TGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHhcc
Confidence 48999999999999999999997 7899999999999999997 7774 99999999999999999999753
No 18
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.71 E-value=8.8e-18 Score=139.05 Aligned_cols=71 Identities=25% Similarity=0.233 Sum_probs=65.3
Q ss_pred CchhhHHHHHHHH-----hCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154 86 GVYKNLLQEIAQR-----VGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156 (470)
Q Consensus 86 ~NpKS~LQE~cQK-----~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~ 156 (470)
.|||+.||||||+ +++.+|.|+++ ++||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||..|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 4899999999998 46789999997 78999999999999999999999999999999999999999987544
No 19
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=3.5e-17 Score=139.81 Aligned_cols=75 Identities=33% Similarity=0.501 Sum_probs=66.5
Q ss_pred ccCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHHhhh
Q 012154 83 DETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 83 D~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~G-kSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
....|||+.||||||++++.+|.|+++.+|++|.+.|+|.|.|+|..++.|.| +|||+|||+||+.||..|....
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 44579999999999999999999999966999999999999999999999999 9999999999999999997544
No 20
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.70 E-value=2.6e-17 Score=139.37 Aligned_cols=73 Identities=26% Similarity=0.276 Sum_probs=67.5
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
...|||+.||||||++++. |.|+++ ++|++|.+.|+|.|.|+|+.++.|.|+|||+|||+||+.||..|....
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 5679999999999999997 799987 789999999999999999999999999999999999999999996443
No 21
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=138.47 Aligned_cols=70 Identities=30% Similarity=0.376 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHH-----cCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQR-----SCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK-----~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||+ +++.+|.|+++ ++||+|++.|+++|+|+|..++.| .|+|||+||++||+.||..|...
T Consensus 2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G-~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCG-KGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCE-EESSHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhHh
Confidence 389999999998 46778999997 789999999999999999999884 99999999999999999988654
No 22
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=3.2e-17 Score=140.07 Aligned_cols=72 Identities=38% Similarity=0.545 Sum_probs=65.9
Q ss_pred CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEeccccc-CCccHHHHHHHHHHHHHhhccCC
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYC-STLRQAEHSAAEVALSSLSHRGP 73 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~G-sSKKeAEq~AAk~AL~~L~~~~p 73 (470)
.||+.||||||++++.+|.|++..+||+|++.|+++|+|+|..++.| .| +|||+||++||+.||..|.....
T Consensus 18 d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G-~G~~SKK~Aeq~AA~~AL~~L~~~~~ 90 (103)
T 2l2n_A 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELAKSSE 90 (103)
T ss_dssp -CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEe-ecCCCHHHHHHHHHHHHHHHHhcccc
Confidence 48999999999999999999999669999999999999999999885 89 99999999999999999986543
No 23
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.70 E-value=4.6e-17 Score=134.07 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=62.6
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||+++ .+|.|+++ ++||+|++.|+++|+|+| .++.| .|+|||+|||+||+.||..|...
T Consensus 9 d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 9 TPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTG-EGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEE-CSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEe-eeCCHHHHHHHHHHHHHHHHhcc
Confidence 48999999999998 68999997 789999999999999999 78774 99999999999999999999754
No 24
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.70 E-value=3e-17 Score=131.35 Aligned_cols=69 Identities=32% Similarity=0.392 Sum_probs=63.6
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~ 156 (470)
..|||+.||||||+ +..|.|+++ ++|++|++.|+|.|.|+|..+ .|.|+|||+|||+||+.||..|.++
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhcC
Confidence 46999999999996 778999997 789999999999999999987 7999999999999999999999753
No 25
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.69 E-value=1.2e-17 Score=134.41 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=62.3
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
.||+.||||||++++. |.|++. ++||+|++.|+++|+|+| .++.| .|+|||+||+.||+.||..|..
T Consensus 8 d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G-~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 8 SPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEG-EGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEE-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEE-eeCCHHHHHHHHHHHHHHHHhh
Confidence 3899999999999998 999997 789999999999999999 78874 9999999999999999999864
No 26
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.69 E-value=6.7e-17 Score=134.42 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=67.5
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCC-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhccc
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLP-VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKET 160 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p-~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~e~ 160 (470)
..|||+.||||||++++.+ .|+ .++|++|.+ .|+|.|.|+|+.++.|.|+|||+|||+||+.||..|.......
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~ 79 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKT 79 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4699999999999999977 999 888999999 7999999999999999999999999999999999998765433
No 27
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.68 E-value=6.2e-17 Score=134.86 Aligned_cols=72 Identities=31% Similarity=0.331 Sum_probs=58.5
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
...|||+.||||||+++. .|.|+++ ++|++|++.|+|.|.|+|+ ++.|.|+|||+|||+||+.||..|....
T Consensus 12 ~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp -CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred cCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence 457999999999999875 7999997 8899999999999999998 5779999999999999999999996554
No 28
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.67 E-value=7.4e-17 Score=134.40 Aligned_cols=68 Identities=31% Similarity=0.347 Sum_probs=56.0
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||+++. .|.|++. ++||+|++.|+++|+|+|+ ++. |.|+|||+|||+||+.||..|...
T Consensus 15 d~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 15 TPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCT-GQGPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp CHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEE-EEeCCHHHHHHHHHHHHHHHHHhc
Confidence 489999999999984 7999987 8899999999999999998 566 599999999999999999999764
No 29
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.67 E-value=7e-17 Score=137.30 Aligned_cols=72 Identities=24% Similarity=0.173 Sum_probs=66.4
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECC-EEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAG-IAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G-~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
..|||+.||||||++ +..|.|++.++|++|.+.|+|.|.|+| ..++.|.|+|||+|||+||+.||+.|....
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence 359999999999999 889999997789999999999999999 688889999999999999999999997543
No 30
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.67 E-value=5.7e-17 Score=137.30 Aligned_cols=69 Identities=23% Similarity=0.375 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG 72 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~ 72 (470)
||+.||||||++++. |.|+++ +.||+|++.|+++|+|+|+.++.| .|+|||+|||+||+.||..|....
T Consensus 16 ~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 16 YMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEA-KGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp HHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCE-EESSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999986 799987 789999999999999999988874 999999999999999999997654
No 31
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.67 E-value=8.8e-17 Score=128.60 Aligned_cols=66 Identities=35% Similarity=0.455 Sum_probs=60.5
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
.||+.||||||+ +.+|.|++. ++||+|++.|+++|+|+|..+ . |.|+|||+||++||+.||..|..
T Consensus 5 d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-E-GSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-E-EEESSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-E-eecCCHHHHHHHHHHHHHHHHhc
Confidence 489999999996 578999997 789999999999999999887 5 59999999999999999999875
No 32
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.66 E-value=6e-17 Score=137.71 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=64.4
Q ss_pred CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECC-EEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNG-EIFESPHYCSTLRQAEHSAAEVALSSLSHRG 72 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnG-e~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~ 72 (470)
.||+.||||||++ +.+|+|++.+.|++|++.|+|+|+|+| ..++.| .|+|||+|||+||+.||..|...+
T Consensus 7 d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 7 GIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMG-NSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp SSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEE-EESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEe-ccCCHHHHHHHHHHHHHHHHHhhC
Confidence 4899999999999 888999998889999999999999999 678874 999999999999999999998654
No 33
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.65 E-value=1.6e-16 Score=132.14 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=63.6
Q ss_pred CcHHHHHHHHHHcCCCCCceEEeeeCCCCCC-cEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAP-RFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG 72 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~eeGP~H~p-rFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~ 72 (470)
.||+.||||||++++.+ .|+ .++||+|++ +|+++|+|+|+.++.| .|+|||+|||+||+.||..|....
T Consensus 7 d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~ 76 (88)
T 1x48_A 7 GYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKSP 76 (88)
T ss_dssp CHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999876 999 888999999 7999999999999885 999999999999999999998764
No 34
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.65 E-value=5.1e-16 Score=131.57 Aligned_cols=74 Identities=24% Similarity=0.215 Sum_probs=67.3
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhcc
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKE 159 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~e 159 (470)
...|||+.||||||++++.+|.|+++ ++|++ +.|+|.|.|+|..++.|.|+|||+|||+||+.||..|.....+
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~ 88 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVK 88 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSSSC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 45799999999999999999999998 67887 8999999999999999999999999999999999999754433
No 35
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.65 E-value=4.4e-16 Score=131.59 Aligned_cols=69 Identities=28% Similarity=0.342 Sum_probs=64.0
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
...|||+.||||||++ ..|.|+++ ++|++|.+.|++.|.|+|+.+ .|.|+|||+|||+||+.||..|..
T Consensus 14 ~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 14 KAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 5679999999999996 68999998 689999999999999999998 799999999999999999999953
No 36
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.64 E-value=3.5e-16 Score=135.83 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=66.6
Q ss_pred CchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154 86 GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVEL-----AGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158 (470)
Q Consensus 86 ~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I-----~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~ 158 (470)
.|||+.||||||++++ .|.|++.+.||+|.+.|+|.|.| +|..++.|.|+|||+|||+||+.||..|.....
T Consensus 26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ 102 (113)
T 1uil_A 26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV 102 (113)
T ss_dssp HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4899999999999999 99999658899999999999999 688888899999999999999999999987654
No 37
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.64 E-value=1.1e-16 Score=135.73 Aligned_cols=73 Identities=18% Similarity=0.010 Sum_probs=66.5
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGI-AFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~-~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~ 158 (470)
..|||+.||||||+. ...|.|+++..||+|++.|++.|.|+|. .++.|.|+|||+|||+||+.||..|.-+..
T Consensus 5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~k 78 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF 78 (94)
T ss_dssp CHHHHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999997 4689999986699999999999999998 899999999999999999999998876654
No 38
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.63 E-value=4.3e-16 Score=135.26 Aligned_cols=69 Identities=28% Similarity=0.354 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEE-----CCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNF-----NGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG 72 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~V-----nGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~ 72 (470)
||+.||||||++++ +|.|++.+.||+|++.|+++|+| +|..++.| .|+|||+|||+||+.||..|...+
T Consensus 28 ~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G-~G~SKK~AEq~AA~~AL~~L~~~~ 101 (113)
T 1uil_A 28 AKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARE-HGSNKKLAAQSCALSLVRQLYHLG 101 (113)
T ss_dssp HHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEEC-CCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEE-eeCCHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999998 89999668999999999999999 68888874 999999999999999999997643
No 39
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=131.59 Aligned_cols=69 Identities=30% Similarity=0.328 Sum_probs=63.0
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP 73 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p 73 (470)
++|+.||||||+++ .|.|+++ ++||+|++.|+++|+|+|..+ . |.|+|||+|||+||+.||..|....+
T Consensus 15 ~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~-G~G~SKK~AEq~AA~~AL~~L~~~~~ 84 (91)
T 2l33_A 15 HGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-Q-GAGSNKKVAKAYAALAALEKLFPDTP 84 (91)
T ss_dssp STTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-E-eeeCCHHHHHHHHHHHHHHHHhhcCC
Confidence 47999999999998 7899987 789999999999999999987 5 59999999999999999999986654
No 40
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.62 E-value=6.7e-16 Score=130.50 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=61.5
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||++ .+|.|+++ ++||+|++.|+++|+|+|..+ . |.|+|||+|||+||+.||..|...
T Consensus 17 d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~aL~~L~~~ 84 (97)
T 2dmy_A 17 DLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-E-ASGPSKKTAKLHVAVKVLQAMGYP 84 (97)
T ss_dssp SCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-E-EeeCCHHHHHHHHHHHHHHHhCCC
Confidence 3899999999996 57999998 789999999999999999998 6 599999999999999999999753
No 41
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.61 E-value=2.2e-16 Score=133.86 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCE-EEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE-IFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe-~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
||+.||||||+++ .+|.|++..+||+|++.|+++|.|+|. .++.| .|+|||+|||+||+.||..|..
T Consensus 8 ~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G-~G~SKK~AEQ~AA~~AL~~l~~ 75 (94)
T 1t4n_A 8 AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDKKM 75 (94)
T ss_dssp HHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEE-EESSHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHHHH
Confidence 7999999999975 679999986699999999999999998 88885 9999999999999999998754
No 42
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.61 E-value=9.5e-16 Score=128.90 Aligned_cols=68 Identities=32% Similarity=0.295 Sum_probs=63.0
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
..++|+.||||||+++ .|.|+++ ++|++|++.|+|.|.|+|..+ .|.|+|||+|||+||+.||..|..
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~ 81 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFP 81 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhh
Confidence 3589999999999988 7899997 789999999999999999987 799999999999999999999963
No 43
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.61 E-value=1.4e-15 Score=134.98 Aligned_cols=71 Identities=27% Similarity=0.244 Sum_probs=66.0
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHHhh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNAAMAAWTSLKQL 156 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~G-kSKKeAKQ~AAk~ALe~Lk~~ 156 (470)
...|||+.||||||++++.+|.|+++.. +|.+.|+|.|.|+|+.|+.|.| +|||+|||+||+.||..|...
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 4569999999999999999999999865 8999999999999999999999 999999999999999999643
No 44
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.61 E-value=1.1e-15 Score=129.60 Aligned_cols=68 Identities=28% Similarity=0.299 Sum_probs=62.9
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||++++.+|.|+++ ++|++ +.|++.|+|+|..++.| .|+|||+|||+||+.||..|...
T Consensus 17 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 17 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp CHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHhh
Confidence 38999999999999999999998 68987 99999999999999885 99999999999999999999754
No 45
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.60 E-value=5.8e-16 Score=135.97 Aligned_cols=75 Identities=17% Similarity=0.001 Sum_probs=67.9
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhhhccc
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGI-AFTGEPAKNKKQAEKNAAMAAWTSLKQLAKET 160 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~-~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~e~ 160 (470)
..|||+.||||||+. ...|.|+++..||+|++.|++.|.|+|. .++.|.|.|||+|||+||+.||..|..+....
T Consensus 7 ~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~Ky~ 82 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYA 82 (117)
T ss_dssp CTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999994 5789999986699999999999999999 89999999999999999999999988776643
No 46
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.58 E-value=2.6e-15 Score=133.36 Aligned_cols=68 Identities=24% Similarity=0.250 Sum_probs=63.1
Q ss_pred CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEeccccc-CCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYC-STLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~G-sSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||++++.+|+|+++.+ +|++.|+++|+|+|+.|+.| .| +|||+|||+||+.||..|...
T Consensus 27 d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G-~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 27 TPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQST-LWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEES-SCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEE-eccCCHHHHHHHHHHHHHHHHhcc
Confidence 3899999999999999999999865 89999999999999999885 99 999999999999999999754
No 47
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.57 E-value=1.1e-15 Score=134.29 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCE-EEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE-IFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe-~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
||+.||||||+.+ .+|.|+++.+||+|++.|+++|+|+|. .++.| .|+|||+|||+||+.||..+..
T Consensus 10 ~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G-~G~SKK~AEQ~AA~~AL~~l~~ 77 (117)
T 1t4o_A 10 AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDKKM 77 (117)
T ss_dssp HHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEE-EESSHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999954 789999986699999999999999998 88885 9999999999999999988764
No 48
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.56 E-value=3.1e-15 Score=130.63 Aligned_cols=69 Identities=28% Similarity=0.317 Sum_probs=63.1
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~ 158 (470)
...|||+.||||||+ |.|+++ ++|++|++.|+|+|.|+|+.+ .|.|+|||+|||+||+.||+.|.....
T Consensus 35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~ 104 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKD 104 (114)
T ss_dssp CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCC
Confidence 457999999999984 899997 789999999999999999999 899999999999999999999976543
No 49
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.55 E-value=1.1e-14 Score=115.67 Aligned_cols=66 Identities=29% Similarity=0.319 Sum_probs=60.3
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~ 156 (470)
..|+++.||||| ..|.|+++ ++|++|.+.|+|.|.|+|+.+ .|.|+|||+|||+||+.||..|...
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 469999999994 67899987 789999999999999999986 7999999999999999999999754
No 50
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.54 E-value=5.5e-15 Score=129.05 Aligned_cols=64 Identities=28% Similarity=0.324 Sum_probs=59.0
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||+ |.|+++ ++|++|++.|+++|+|+|+.+ . |.|+|||+|||+||+.||+.|...
T Consensus 38 d~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~-G~G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 38 NTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-L-GQGRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-E-eeeCCHHHHHHHHHHHHHHHHHcC
Confidence 489999999984 899987 789999999999999999999 6 599999999999999999999764
No 51
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.53 E-value=6.2e-15 Score=135.55 Aligned_cols=72 Identities=28% Similarity=0.323 Sum_probs=67.0
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
..|||+.||||||++++. |.|+++ ++|++|.+.|+|.|.|+|+.++.|.|.|||+|||+||+.||..|....
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~ 84 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEK 84 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhccc
Confidence 369999999999999997 899987 789999999999999999989889999999999999999999997543
No 52
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.50 E-value=3.3e-14 Score=114.71 Aligned_cols=68 Identities=31% Similarity=0.351 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP 73 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p 73 (470)
.|+-|+||+|.+ ..|.|++. ++||+|++.|+++|.|+|..+ . |.|+|||+|||+||+.||+.|....+
T Consensus 6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~L~~~~~ 74 (75)
T 3p1x_A 6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-Q-GAGSNKKVAKAYAALAALEKLFPDTP 74 (75)
T ss_dssp CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-E-EEECCHHHHHHHHHHHHHHHHHccCC
Confidence 367789999986 47899998 799999999999999999988 6 59999999999999999999987654
No 53
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.49 E-value=3.8e-14 Score=112.58 Aligned_cols=63 Identities=25% Similarity=0.293 Sum_probs=56.8
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
.+|+.||||| .+|.|++. ++||+|++.|+++|+|+|..+ . |.|+|||+|||+||+.||..|..
T Consensus 5 np~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~-G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 5 NPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-E-GSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-E-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-E-EeeCCHHHHHHHHHHHHHHHHHh
Confidence 4799999993 57999987 789999999999999999876 5 59999999999999999999865
No 54
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.47 E-value=9.1e-14 Score=112.17 Aligned_cols=65 Identities=32% Similarity=0.312 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 88 pKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
.|+.|++|+|.. ..|.|+++ ++|++|++.|++.|.|+|..+ .|.|+|||+|||+||+.||+.|..
T Consensus 6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (75)
T 3p1x_A 6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFP 71 (75)
T ss_dssp CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHc
Confidence 355566666654 57899998 789999999999999999998 799999999999999999999853
No 55
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.46 E-value=6.4e-14 Score=132.04 Aligned_cols=69 Identities=32% Similarity=0.309 Sum_probs=65.8
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk 154 (470)
..|||+.||||||++++..|.|+++ ++|++|.+.|+|.|.|+|+ ++.|.|.|||+|||.||+.||..|+
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999987 7899999999999999999 9999999999999999999999985
No 56
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.45 E-value=1.4e-13 Score=132.58 Aligned_cols=71 Identities=30% Similarity=0.310 Sum_probs=66.8
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
..|||+.||||||++++..|.|+++ ++|++|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||..|..
T Consensus 178 ~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 178 LFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp CSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999997 7899999999999999999999999999999999999999999853
No 57
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.44 E-value=8.7e-14 Score=131.13 Aligned_cols=68 Identities=29% Similarity=0.372 Sum_probs=63.1
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
.||+.||||||++++.+|.|++. ++|++|.+.|+|.|+++|+ ++.| .|+|||+||+.||+.||+.|..
T Consensus 151 ~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G-~G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 151 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLG-EGKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEE-ecCCHHHHHHHHHHHHHHHhhc
Confidence 37999999999999999999987 7899999999999999999 8885 9999999999999999999863
No 58
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.43 E-value=1.5e-13 Score=132.42 Aligned_cols=70 Identities=30% Similarity=0.358 Sum_probs=64.1
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.||+.||||||++++..|.|++. ++||+|++.|+|.|.++|+.++.| .|.|||+||+.||+.||..|..+
T Consensus 180 dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 180 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG-KGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhhc
Confidence 37999999999999989999998 789999999999999999999885 99999999999999999999754
No 59
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.41 E-value=4.7e-13 Score=128.40 Aligned_cols=71 Identities=25% Similarity=0.237 Sum_probs=66.0
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~ 156 (470)
...|||+.||||||++++.+|.|+++ ++|++ +.|+|.|.|+|..++.|.|.|||+|||+||+.||..|...
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999999997 68887 8999999999999999999999999999999999999653
No 60
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.36 E-value=5.9e-14 Score=135.47 Aligned_cols=72 Identities=35% Similarity=0.340 Sum_probs=0.0
Q ss_pred cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
...|||+.||||||++++..|.|+++ ++|++|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||+.|+.
T Consensus 175 ~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 175 LIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence 34799999999999999999999997 7899999999999999999999999999999999999999999875
No 61
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.34 E-value=8.2e-14 Score=132.95 Aligned_cols=73 Identities=32% Similarity=0.447 Sum_probs=0.0
Q ss_pred CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
..|||+.||||||++++..|.|++..+|++|.+.|+|.|.|+|+.++.|.|.|||+||++||+.||+.|....
T Consensus 161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 161 GLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 4699999999999999999999998899999999999999999998899999999999999999999997544
No 62
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.33 E-value=1.1e-13 Score=133.55 Aligned_cols=68 Identities=29% Similarity=0.521 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~ 70 (470)
||+.||||||++++.+|+|++. ++|++|++.|+|.|+|+|+.++.| .|.|||+||+.||+.||+.|..
T Consensus 179 pks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARA-IAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999999997 889999999999999999988885 9999999999999999998864
No 63
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.32 E-value=1.4e-13 Score=131.36 Aligned_cols=70 Identities=31% Similarity=0.419 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG 72 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~ 72 (470)
||+.||||||++++..|+|++..+|++|.+.|+|.|+++|+.++.| .|.|||+||+.||+.||+.|...+
T Consensus 164 pkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSG-VGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp -----------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhhcc
Confidence 7999999999999989999988899999999999999999988885 899999999999999999997653
No 64
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.17 E-value=4.4e-11 Score=114.77 Aligned_cols=69 Identities=32% Similarity=0.392 Sum_probs=62.4
Q ss_pred CchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154 86 GVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157 (470)
Q Consensus 86 ~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~ 157 (470)
.|+|+.|++|++. +..|.|+++ ++|++|.+.|+|.|.|+|..+ .|.|.|||+|||+||+.||..|....
T Consensus 4 ~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~~ 73 (236)
T 2l3j_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQFP 73 (236)
T ss_dssp CCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhcc
Confidence 5899999999976 567899997 689999999999999999986 79999999999999999999997543
No 65
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.91 E-value=1.4e-10 Score=117.36 Aligned_cols=69 Identities=23% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCchhhHHHHHHHHhCCCC-CeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154 85 TGVYKNLLQEIAQRVGAPL-PQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158 (470)
Q Consensus 85 ~~NpKS~LQE~cQK~~l~l-P~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~ 158 (470)
..|||+.||||||++++.. |.|++. ++|+ |++.|.|+|+.++.|.|.|||+|||.||+.||+.|+....
T Consensus 253 ~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~k 323 (341)
T 3rv0_A 253 NKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELLRK 323 (341)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhh
Confidence 4699999999999999765 589987 5664 9999999999999999999999999999999999977644
No 66
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.85 E-value=2.7e-10 Score=115.19 Aligned_cols=64 Identities=27% Similarity=0.329 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCC-CceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 2 YKNQLQELAQRSCFNL-PSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 2 yKS~LQElcQK~g~~l-PeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
||+.||||||++++.. |.|++. +.|+ |++.|+++|+.++.| .|.|||+|||.||+.||+.|...
T Consensus 256 ~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G-~G~SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 256 AKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEA-EGNSIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHhhhh
Confidence 7999999999998765 599987 6664 999999999999885 99999999999999999998764
No 67
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.58 E-value=5.2e-08 Score=93.79 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=52.9
Q ss_pred CchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 86 GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 86 ~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
.++|+.||||++.... .+.|. ..|..|.+.|+|.|.|+|..++.|.|.|||+|||.||+.||+.|+.
T Consensus 197 ~~~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 197 NVPRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp HSCCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 3567777777776542 22232 3445789999999999999889999999999999999999999964
No 68
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.51 E-value=6.6e-08 Score=93.06 Aligned_cols=66 Identities=20% Similarity=0.142 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
+|+.||||+|.+.. .+.|. ..|..|++.|++.|.++|..++.| .|+|||+|||.||+.||+.|...
T Consensus 199 ~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~G-~G~SkK~Aeq~AA~~AL~~l~~~ 264 (265)
T 3c4b_A 199 PRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFKG-VGRSYRIAKSAAARRALRSLKAN 264 (265)
T ss_dssp CCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEEE-EESSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEEE-eeCCHHHHHHHHHHHHHHHHhhC
Confidence 56778888877642 23333 345579999999999999988884 99999999999999999998653
No 69
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.10 E-value=0.032 Score=47.38 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=50.8
Q ss_pred CchhhHHHHHHHHhC-----CCCCeEEeeccCCCCCCeEEEEEEECCE----EeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154 86 GVYKNLLQEIAQRVG-----APLPQYTTIRSGLGHLPVFTGIVELAGI----AFTGEPAKNKKQAEKNAAMAAWTSLKQL 156 (470)
Q Consensus 86 ~NpKS~LQE~cQK~~-----l~lP~Ye~vesGP~H~p~Ft~tV~I~G~----~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~ 156 (470)
.+.++.|+.||++.- ...|.|.+.+... ....| |+|.+-.. .+.+..-.|||.||+.||.+|...|..+
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~ 81 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNL 81 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHC
Confidence 467899999999874 2467888642111 12367 88887542 2333355999999999999999999887
Q ss_pred hc
Q 012154 157 AK 158 (470)
Q Consensus 157 ~~ 158 (470)
+.
T Consensus 82 G~ 83 (102)
T 2kou_A 82 GV 83 (102)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 70
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=90.07 E-value=0.43 Score=40.42 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcC-----CCCCceEEeeeCCCCCCcEEEEEEECC-----EEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154 3 KNQLQELAQRSC-----FNLPSYTCIREGPDHAPRFKATVNFNG-----EIFESPHYCSTLRQAEHSAAEVALSSLSHRG 72 (470)
Q Consensus 3 KS~LQElcQK~g-----~~lPeYel~eeGP~H~prFtv~V~VnG-----e~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~ 72 (470)
.+.|+.||++.- ...|.|.+..... ....| |+|.+-. ...|. .-.|||.||+.||-+|...|-+.|
T Consensus 7 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~--~~~sk~~AK~sAAf~Ac~~L~~~G 82 (102)
T 2kou_A 7 ISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESS--LLPSTEAAKKDACLKAVHELHNLG 82 (102)
T ss_dssp HHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEE--EESSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCC--ccccHHHHHHHHHHHHHHHHHHCC
Confidence 578999999963 2358888652111 12367 8888842 22232 349999999999999999998766
Q ss_pred C
Q 012154 73 P 73 (470)
Q Consensus 73 p 73 (470)
.
T Consensus 83 ~ 83 (102)
T 2kou_A 83 V 83 (102)
T ss_dssp S
T ss_pred C
Confidence 4
No 71
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=84.74 E-value=1.1 Score=50.92 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=36.0
Q ss_pred eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154 118 VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK 158 (470)
Q Consensus 118 ~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~ 158 (470)
.|.|.+.+-+..+-.|..+-||+|||.||+.||+.|+..+.
T Consensus 58 ~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~~g~~~~ 98 (950)
T 3htx_A 58 LYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGIRPQ 98 (950)
T ss_dssp EEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTTTTSTTT
T ss_pred eEEEEeeCCCceEecchhhccccHHHHHHHHHHHHhCCCcc
Confidence 89999999887766789999999999999999999887544
No 72
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=83.49 E-value=1 Score=51.24 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=33.0
Q ss_pred cEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154 32 RFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR 71 (470)
Q Consensus 32 rFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~ 71 (470)
.|.|.+.+-+..+-+ +..+-||+|||.||+.||++|+..
T Consensus 58 ~~~c~~~lp~~~~~~-~~~~~kkd~eq~aa~~al~~~g~~ 96 (950)
T 3htx_A 58 LYRCHLQLPEFSVVS-NVFKKKKDSEQSAAELALDKLGIR 96 (950)
T ss_dssp EEEEEEECSSCEEEC-CCBSCHHHHHHHHHHHHHTTTTST
T ss_pred eEEEEeeCCCceEec-chhhccccHHHHHHHHHHHHhCCC
Confidence 788888887666656 489999999999999999999863
No 73
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.88 E-value=2.2 Score=37.40 Aligned_cols=76 Identities=21% Similarity=0.128 Sum_probs=50.1
Q ss_pred ccccCCchhhHHHHHHHHhCCC--CCeEEee--ccCCCCCCeEEEEEEEC---CEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154 81 ILDETGVYKNLLQEIAQRVGAP--LPQYTTI--RSGLGHLPVFTGIVELA---GIAFTGEPAKNKKQAEKNAAMAAWTSL 153 (470)
Q Consensus 81 i~D~~~NpKS~LQE~cQK~~l~--lP~Ye~v--esGP~H~p~Ft~tV~I~---G~~f~~G~GkSKKeAKQ~AAk~ALe~L 153 (470)
.+.+-..+|+.|....|+.-.. .-.|.+. .+|. ++=.|++.+. -.+| .|.|+.|-+||.+||-.|+..|
T Consensus 12 ~L~~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~---k~K~~tl~l~WP~~mef-~a~G~rK~eAE~kAAA~AC~kL 87 (119)
T 2db2_A 12 LLKEFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGP---KKKKVTLHIKWPKSVEV-EGYGSKKIDAERQAAAAACQLF 87 (119)
T ss_dssp STTTCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSS---SSEEEEEEECSSSCEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHccCchhhheeEEeecCC---ceeEEEEEecCCCcEEE-EeeccchHHHHHHHHHHHHHHH
Confidence 3445568999999988765321 0122221 2332 2235555553 3445 4799999999999999999999
Q ss_pred Hhhhccc
Q 012154 154 KQLAKET 160 (470)
Q Consensus 154 k~~~~e~ 160 (470)
+.+..-.
T Consensus 88 K~Lgll~ 94 (119)
T 2db2_A 88 KGWGLLG 94 (119)
T ss_dssp HHHTSSC
T ss_pred HHcCccC
Confidence 9998744
No 74
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.61 E-value=8.6 Score=33.77 Aligned_cols=65 Identities=28% Similarity=0.283 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHcC-----CCCCceEEeeeCCCCCCcEEEEEEEC---CEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154 2 YKNQLQELAQRSC-----FNLPSYTCIREGPDHAPRFKATVNFN---GEIFESPHYCSTLRQAEHSAAEVALSSLSHRG 72 (470)
Q Consensus 2 yKS~LQElcQK~g-----~~lPeYel~eeGP~H~prFtv~V~Vn---Ge~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~ 72 (470)
+|+.|+...|.-- .+.-.|-. .+|. +.=.|++++. -+.|. +.|+.|-+||++||..|+..|...+
T Consensus 19 PKnLL~~ViqrA~~ss~~kd~l~~~~-t~g~---k~K~~tl~l~WP~~mef~--a~G~rK~eAE~kAAA~AC~kLK~Lg 91 (119)
T 2db2_A 19 PKNLLNSVIGRALGISHAKDKLVYVH-TNGP---KKKKVTLHIKWPKSVEVE--GYGSKKIDAERQAAAAACQLFKGWG 91 (119)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHEEEEE-CCSS---SSEEEEEEECSSSCEEEE--EEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHccCchhhheeEEe-ecCC---ceeEEEEEecCCCcEEEE--eeccchHHHHHHHHHHHHHHHHHcC
Confidence 5788888777631 11112222 2342 2236666664 45553 5899999999999999999988764
No 75
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=38.35 E-value=2.1e+02 Score=26.50 Aligned_cols=142 Identities=19% Similarity=0.184 Sum_probs=74.1
Q ss_pred HHHHHHHcCCCCCceEEee-eC---CCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCC-Cc-ccc
Q 012154 6 LQELAQRSCFNLPSYTCIR-EG---PDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPS-PS-LAA 79 (470)
Q Consensus 6 LQElcQK~g~~lPeYel~e-eG---P~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS-~s-Lss 79 (470)
|.+++.... . -+|+-.+ .| .-.+|.-++.++-+|+.+.+| .+|..+|+. |++...+.|.+.+-. .. ...
T Consensus 30 L~~ia~~~~-n-~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG--AkS~e~a~~-a~~~~~~~L~~lg~~~~~~~~~ 104 (188)
T 2z8u_A 30 LEEVAMILE-N-AEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTG--AKSKEEAEI-AIKKIIKELKDAGIDVIENPEI 104 (188)
T ss_dssp HHHHHHHSS-C-CC-------CEEEEETTTTEEEEECTTSEEEEEE--ESSHHHHHH-HHHHHHHHHHHTTCCCCSSCCC
T ss_pred HHHHHhhCC-C-CEECCCCcccEEEEcCCCcEEEEEeCCCeEEEec--CCCHHHHHH-HHHHHHHHHHhcCCCccccCce
Confidence 667776643 2 3665442 11 114567778888899998775 578887777 666666666554421 01 010
Q ss_pred cccc----cCCchhhHHHHHHHHhCCCCCeEEeec-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHH
Q 012154 80 RILD----ETGVYKNLLQEIAQRVGAPLPQYTTIR-SGL---GHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWT 151 (470)
Q Consensus 80 ~i~D----~~~NpKS~LQE~cQK~~l~lP~Ye~ve-sGP---~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe 151 (470)
.+.+ .+.+..=.|.+++... .--.|+=.. -|- -..+.-++.+...|+....| ++|..++++ |.+..+.
T Consensus 105 ~I~NIVas~~l~~~i~L~~la~~~--~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTG-aks~~~~~~-A~~~i~~ 180 (188)
T 2z8u_A 105 KIQNMVATADLGIEPNLDDIALMV--EGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG-LKSEEDAKR-ALKKILD 180 (188)
T ss_dssp EEEEEEEEEECSSCCCHHHHHHHS--TTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEES-CSCHHHHHH-HHHHHHH
T ss_pred EEEEEEEEEecCCccCHHHHHhhC--cCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHH
Confidence 1100 0112222467777652 223454110 000 01345566666789887654 678787776 5666666
Q ss_pred HHHhh
Q 012154 152 SLKQL 156 (470)
Q Consensus 152 ~Lk~~ 156 (470)
.|+..
T Consensus 181 ~L~~~ 185 (188)
T 2z8u_A 181 TIKEV 185 (188)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 76
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=32.12 E-value=2.3e+02 Score=26.43 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=78.8
Q ss_pred HHHHHHHcCCCCCceEEeee-C---CCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCC-Cc-ccc
Q 012154 6 LQELAQRSCFNLPSYTCIRE-G---PDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPS-PS-LAA 79 (470)
Q Consensus 6 LQElcQK~g~~lPeYel~ee-G---P~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS-~s-Lss 79 (470)
|.+++.... . -+|+-.+. | .-++|.-++.++-+|+.+.+| ++|..+|+. |++..++.|.+.+-. .. ...
T Consensus 30 L~~la~~~~-n-~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG--akS~e~a~~-a~~~i~~~L~~lG~~~~~~~~~ 104 (198)
T 1mp9_A 30 LYAMERSVP-N-VEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTG--AKSTDELIK-AVKRIIKTLKKYGMQLTGKPKI 104 (198)
T ss_dssp HHHHHHHST-T-CBCCTTTCSSEEEEETTTTEEEEECTTSEEEEEC--CSSHHHHHH-HHHHHHHHHHHTTCCCSSCCEE
T ss_pred HHHHHhhCC-C-CEECCccccceEEEcCCCceEEEEeCCCeEEEec--cCCHHHHHH-HHHHHHHHHHHcCCcccCcCce
Confidence 667776543 2 34543211 1 014577788888899998775 578887777 677766677654432 11 011
Q ss_pred cccc----cCCchhhHHHHHHHHhCCCCCeEEeec-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHH
Q 012154 80 RILD----ETGVYKNLLQEIAQRVGAPLPQYTTIR-SGL---GHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWT 151 (470)
Q Consensus 80 ~i~D----~~~NpKS~LQE~cQK~~l~lP~Ye~ve-sGP---~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe 151 (470)
.+.+ .+....=.|.+++... .--.|+=.. -|- -..+.-++.+...|+....| ++|..++++ |.+..+.
T Consensus 105 ~I~NIVas~~l~~~i~L~~la~~~--~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTG-aks~~~~~~-A~~~i~~ 180 (198)
T 1mp9_A 105 QIQNIVASANLHVIVNLDKAAFLL--ENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITG-AKREDEVHK-AVKKIFD 180 (198)
T ss_dssp EEEEEEEEEECSSEECHHHHHHHS--SSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEE-ESSHHHHHH-HHHHHHH
T ss_pred EEEEEEEEeeCCCccCHHHHHhhc--CCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHH
Confidence 1111 1122233467777652 112343110 000 01345666677789886654 677777776 6667778
Q ss_pred HHHhhhc
Q 012154 152 SLKQLAK 158 (470)
Q Consensus 152 ~Lk~~~~ 158 (470)
.|+....
T Consensus 181 ~L~~~~~ 187 (198)
T 1mp9_A 181 KLVELDC 187 (198)
T ss_dssp HHHHTTC
T ss_pred HHHHhCC
Confidence 8877654
No 77
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=30.22 E-value=2e+02 Score=26.41 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCC-Cc-ccccccc----cCCchhhHHHHHHHHhCCC
Q 012154 29 HAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPS-PS-LAARILD----ETGVYKNLLQEIAQRVGAP 102 (470)
Q Consensus 29 H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS-~s-Lss~i~D----~~~NpKS~LQE~cQK~~l~ 102 (470)
.+|.-++.++-+|+.+.+| ++|..+|+. |++...+.|.+.+-. .. ....+.+ -+....=.|.+++... .
T Consensus 51 ~~P~~t~lIF~SGKiv~TG--akS~~~~~~-a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~--~ 125 (182)
T 1ais_A 51 DDPKVALLIFSSGKLVVTG--AKSVQDIER-AVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL--P 125 (182)
T ss_dssp SSSCCEEEECTTSEEEEEE--ESSHHHHHH-HHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHS--T
T ss_pred CCCcEEEEEeCCCeEEEec--CCCHHHHHH-HHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHHhhC--C
Confidence 3566777888899998775 578887776 667766777655432 11 0111110 1122233466666552 1
Q ss_pred CCeEEeec-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154 103 LPQYTTIR-SGL---GHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155 (470)
Q Consensus 103 lP~Ye~ve-sGP---~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~ 155 (470)
--.|+=.. -|- -..+.-++.+...|+....| ++|..++++ |.+..+..|+.
T Consensus 126 ~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTG-aks~~~~~~-a~~~i~~~L~~ 180 (182)
T 1ais_A 126 NCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSG-AKSEADAWE-AVRKLLRELDK 180 (182)
T ss_dssp TEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEE-ESSHHHHHH-HHHHHHHHHTT
T ss_pred CCEECCccCceEEEEeCCCcEEEEEecCCEEEEEe-cCCHHHHHH-HHHHHHHHHHH
Confidence 12343110 000 01245566677789887654 678787776 55555565543
No 78
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=21.06 E-value=4.7e+02 Score=24.86 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=65.5
Q ss_pred CCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCCcc-cccccc----cCCchhhHHHHHHHHhCCCCC
Q 012154 30 APRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSL-AARILD----ETGVYKNLLQEIAQRVGAPLP 104 (470)
Q Consensus 30 ~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~sL-ss~i~D----~~~NpKS~LQE~cQK~~l~lP 104 (470)
++.-++.++-.|+.+.+| ++|..+|+. |++...+.|.+.+-.... ..++.+ -+..+.=.|.+++..++. --
T Consensus 86 ~Pk~t~LIF~SGKiV~TG--AkS~e~a~~-A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~-~~ 161 (218)
T 3eik_A 86 EPKTTALIFASGKMVITG--AKSEKSSRM-AAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSN-YC 161 (218)
T ss_dssp TTTEEEEECTTSEEEEEE--ESSHHHHHH-HHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTT-TE
T ss_pred CCcEEEEEECCCeEEEEe--cCCHHHHHH-HHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccC-Cc
Confidence 566777788899998775 678888887 666666777665432111 111111 123344457888876532 12
Q ss_pred eEEeec-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 012154 105 QYTTIR-SGL---GHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK 154 (470)
Q Consensus 105 ~Ye~ve-sGP---~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk 154 (470)
.|+=.. -|- -..+.-++.+...|+.+-.| +++.+++++ |-...+..|.
T Consensus 162 ~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTG-aks~~d~~~-A~~~I~p~L~ 213 (218)
T 3eik_A 162 SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTG-AKVRDDIYQ-AFNNIYPVLI 213 (218)
T ss_dssp ECCTTTSSSEEEEETTTTEEEEECTTSEEEEEE-ESSHHHHHH-HHHHHHHHHH
T ss_pred EECCccCceEEEEcCCCCEEEEEeCCCeEEEEe-cCCHHHHHH-HHHHHHHHHH
Confidence 343110 000 01245566666788886554 567777665 4444444443
Done!