BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012155
         (470 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 64/147 (43%), Gaps = 20/147 (13%)

Query: 47  LGLPAGVKFDPTDQELIDHLEAKVEAKDMVKPHPLIDEFIPTIEGEDGICYTHPEKLPGV 106
           L LP G +F PTD EL++H   +  A   + P P+I         E  +    P  LP  
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRL-PVPII--------AEVDLYKFDPWDLPER 63

Query: 107 TRDGLSRHFFHRP-SKAYTTGTRKRRKIQTECDLQGGETRWHKTGKTRPVMVNGKQKGCK 165
              G    +F  P  + Y  G+R  R          G   W  TG  +PV   G+  G K
Sbjct: 64  ALFGAREWYFFTPRDRKYPNGSRPNR--------AAGNGYWKATGADKPVAPRGRTLGIK 115

Query: 166 KILVLYTNFGKNRKPEKTNWVMHQYHL 192
           K LV Y   GK  +  KT+W+MH+Y L
Sbjct: 116 KALVFYA--GKAPRGVKTDWIMHEYRL 140


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 62/148 (41%), Gaps = 22/148 (14%)

Query: 47  LGLPAGVKFDPTDQEL-IDHLEAKVEAKDMVKPHPLIDEFIPTIEGEDGICYTHPEKLPG 105
           L LP G +F PTD+EL + +L  K    D          F   +  E  +    P  LP 
Sbjct: 18  LSLPPGFRFYPTDEELMVQYLCRKAAGYD----------FSLQLIAEIDLYKFDPWVLPN 67

Query: 106 VTRDGLSRHFFHRP-SKAYTTGTRKRRKIQTECDLQGGETRWHKTGKTRPVMVNGKQKGC 164
               G    +F  P  + Y  G+R  R          G   W  TG  + +   G++ G 
Sbjct: 68  KALFGEKEWYFFSPRDRKYPNGSRPNR--------VAGSGYWKATGTDKIISTEGQRVGI 119

Query: 165 KKILVLYTNFGKNRKPEKTNWVMHQYHL 192
           KK LV Y   GK  K  KTNW+MH+Y L
Sbjct: 120 KKALVFYI--GKAPKGTKTNWIMHEYRL 145


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 62/148 (41%), Gaps = 22/148 (14%)

Query: 47  LGLPAGVKFDPTDQEL-IDHLEAKVEAKDMVKPHPLIDEFIPTIEGEDGICYTHPEKLPG 105
           L LP G +F PTD+EL + +L  K    D          F   +  E  +    P  LP 
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYD----------FSLQLIAEIDLYKFDPWVLPN 64

Query: 106 VTRDGLSRHFFHRP-SKAYTTGTRKRRKIQTECDLQGGETRWHKTGKTRPVMVNGKQKGC 164
               G    +F  P  + Y  G+R  R          G   W  TG  + +   G++ G 
Sbjct: 65  KALFGEKEWYFFSPRDRKYPNGSRPNR--------VAGSGYWKATGTDKIISTEGQRVGI 116

Query: 165 KKILVLYTNFGKNRKPEKTNWVMHQYHL 192
           KK LV Y   GK  K  KTNW+MH+Y L
Sbjct: 117 KKALVFYI--GKAPKGTKTNWIMHEYRL 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,607,746
Number of Sequences: 62578
Number of extensions: 494919
Number of successful extensions: 596
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 6
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)