Query 012155
Match_columns 470
No_of_seqs 320 out of 1526
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.1E-47 1.1E-51 353.3 14.3 150 44-213 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 3E-47 1E-51 353.1 12.9 151 44-214 12-168 (171)
3 1qb3_A Cyclin-dependent kinase 73.7 0.63 2.1E-05 41.2 -0.2 13 181-193 81-93 (150)
4 4ayb_P DNA-directed RNA polyme 52.2 5 0.00017 28.8 1.1 18 27-44 20-37 (48)
5 1ldd_A APC2WHB, anaphase promo 51.1 7.3 0.00025 30.6 2.1 26 50-75 37-63 (74)
6 2kn9_A Rubredoxin; metalloprot 39.6 6.8 0.00023 31.3 0.3 40 14-56 14-55 (81)
7 3h0g_L DNA-directed RNA polyme 38.9 11 0.00037 28.7 1.3 16 28-43 36-51 (63)
8 1twf_L ABC10-alpha, DNA-direct 36.9 12 0.0004 29.1 1.2 16 28-43 43-58 (70)
9 1e8j_A Rubredoxin; iron-sulfur 35.3 19 0.00065 26.2 2.0 26 31-56 4-31 (52)
10 2jz8_A Uncharacterized protein 32.8 21 0.00071 28.9 2.1 31 28-58 46-79 (87)
11 4rxn_A Rubredoxin; electron tr 31.8 16 0.00054 26.9 1.1 26 31-56 4-31 (54)
12 2v3b_B Rubredoxin 2, rubredoxi 31.7 14 0.00048 27.2 0.9 26 31-56 4-31 (55)
13 2f9y_B Acetyl-coenzyme A carbo 28.9 21 0.00071 35.2 1.8 38 30-67 24-65 (304)
14 1s24_A Rubredoxin 2; electron 28.9 19 0.00064 29.1 1.2 27 30-56 35-63 (87)
15 1yk4_A Rubredoxin, RD; electro 28.6 17 0.00058 26.5 0.8 26 31-56 3-30 (52)
16 1dx8_A Rubredoxin; electron tr 27.2 24 0.00082 27.3 1.5 27 30-56 7-35 (70)
17 2oh5_A Polyhedrin, C-polyhedri 26.4 35 0.0012 30.7 2.6 27 144-170 141-168 (248)
18 2crw_A ARF GAP 3, ADP-ribosyla 24.0 56 0.0019 28.9 3.5 35 18-55 16-51 (149)
19 3i9v_7 NADH-quinone oxidoreduc 22.5 1.9E+02 0.0065 24.4 6.2 50 94-149 40-96 (129)
20 2apo_B Ribosome biogenesis pro 22.5 41 0.0014 25.3 1.9 23 31-60 19-41 (60)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.1e-47 Score=353.28 Aligned_cols=150 Identities=31% Similarity=0.577 Sum_probs=125.1
Q ss_pred CCCCCCCCCceeCCChHHHHH-HHHHhhhcCCCCCCCCccccccccccccCCCCCCCCCCCCCcccCC-cceEEeecCCC
Q 012155 44 PDWLGLPAGVKFDPTDQELID-HLEAKVEAKDMVKPHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDG-LSRHFFHRPSK 121 (470)
Q Consensus 44 ~~~~~LPpG~RF~PTDeELI~-yL~~Ki~~~~~~~~~Pl~~~~I~~id~e~diy~~~Pw~Lp~~~~~g-~~~yFF~~~~~ 121 (470)
...++|||||||+|||||||. ||++|+.+.++ +..+|+++ |||.+|||+||+.+..| .+||||+++.+
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~------~~~~I~ev----Dvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ 79 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRL------PVPIIAEV----DLYKFDPWDLPERALFGAREWYFFTPRDR 79 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCC------SSSCCEEC----CGGGSCGGGSGGGCSSCSSEEEEEEECCC
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCC------CcCeeeec----ccccCCchhhhhhhccCCceEEEEecccc
Confidence 456789999999999999998 59999998755 44677655 79999999999987655 46889988899
Q ss_pred CCCCCCcccccccccccCCCCCcEEeecCCCceEEeCCeeeeeeEEEeeEeecCCCCCCCCcCeEEEEEeeCCCcc----
Q 012155 122 AYTTGTRKRRKIQTECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEE---- 197 (470)
Q Consensus 122 k~~~G~R~~R~~~~~~~~~~g~G~Wk~tG~~k~V~~~g~~vG~Kk~l~Fy~~~G~~~~g~kT~WvMhEY~L~~~~~---- 197 (470)
+|++|.|.+|++ ++||||++|++++|..+|.+||+||+|+||. |+++++.||+|+||||+|.....
T Consensus 80 ky~~g~R~nR~t--------~~G~WkatG~dk~I~~~g~~vG~KktLvFy~--g~~p~g~kT~WvMhEY~L~~~~~~~~~ 149 (174)
T 3ulx_A 80 KYPNGSRPNRAA--------GNGYWKATGADKPVAPRGRTLGIKKALVFYA--GKAPRGVKTDWIMHEYRLADAGRAAAG 149 (174)
T ss_dssp -----CCSCEEE--------TTEEEEECSCCEEECCSSSCCEEEEEEEEEE--SSTTSCEEEEEEEEEEEECSCC-----
T ss_pred ccCCCCCceeec--------CCceEccCCCCcEEeeCCcEEEEEEEEEEec--CCCCCCCcCCeEEEEEEeCCCCCcccc
Confidence 999999999985 5799999999999999999999999999999 88999999999999999987642
Q ss_pred -----ccCCCeEEEEEEeecc
Q 012155 198 -----EKEGELVVSKIFYQTQ 213 (470)
Q Consensus 198 -----~~~~~~VLCKI~~k~~ 213 (470)
...++|||||||+|+.
T Consensus 150 ~~~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 150 AKKGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp ------CCSSEEEEEEEESCC
T ss_pred cccCCCCCCCEEEEEEEEcCC
Confidence 1357999999999863
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3e-47 Score=353.06 Aligned_cols=151 Identities=33% Similarity=0.554 Sum_probs=123.0
Q ss_pred CCCCCCCCCceeCCChHHHHHH-HHHhhhcCCCCCCCCccccccccccccCCCCCCCCCCCCCcccCC-cceEEeecCCC
Q 012155 44 PDWLGLPAGVKFDPTDQELIDH-LEAKVEAKDMVKPHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDG-LSRHFFHRPSK 121 (470)
Q Consensus 44 ~~~~~LPpG~RF~PTDeELI~y-L~~Ki~~~~~~~~~Pl~~~~I~~id~e~diy~~~Pw~Lp~~~~~g-~~~yFF~~~~~ 121 (470)
.+++.|||||||+|||||||.| |++||.+.++ +..+|+++ |||.+|||+||+....| .+||||+++.+
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~------~~~~I~e~----Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~ 81 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDF------SLQLIAEI----DLYKFDPWVLPNKALFGEKEWYFFSPRDR 81 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCC------SSCCSEEC----CGGGSCGGGHHHHSSSCSSEEEEEEECCC
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCC------CCCeEeec----ccccCChhHhhchhhcCCccEEEEecccc
Confidence 5788999999999999999985 9999997754 45677655 69999999999987654 56889999999
Q ss_pred CCCCCCcccccccccccCCCCCcEEeecCCCceEEeCCeeeeeeEEEeeEeecCCCCCCCCcCeEEEEEeeCCCcc----
Q 012155 122 AYTTGTRKRRKIQTECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEE---- 197 (470)
Q Consensus 122 k~~~G~R~~R~~~~~~~~~~g~G~Wk~tG~~k~V~~~g~~vG~Kk~l~Fy~~~G~~~~g~kT~WvMhEY~L~~~~~---- 197 (470)
+|++|.|.+|++ ++||||++|++++|..+|.+||+||+|+||. |+++++.||+|+||||+|.....
T Consensus 82 k~~~g~R~~R~t--------~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~--g~~p~g~kT~WvMhEY~l~~~~~~~~~ 151 (171)
T 1ut7_A 82 KYPNGSRPNRVA--------GSGYWKATGTDKIISTEGQRVGIKKALVFYI--GKAPKGTKTNWIMHEYRLIEPSRRNGS 151 (171)
T ss_dssp -------CCEEE--------TTEEEEEEEEEEEEEETTEEEEEEEEEEEEE--SSTTSCEEEEEEEEEEEECCCC-----
T ss_pred ccCCCCcccccC--------CCCEEeccCCCceEEecCcEEEEEEEEEEEc--CcCCCCCcCCeEEEEEEcCCCccccCc
Confidence 999999999985 5799999999999999999999999999999 88899999999999999987642
Q ss_pred ccCCCeEEEEEEeeccc
Q 012155 198 EKEGELVVSKIFYQTQP 214 (470)
Q Consensus 198 ~~~~~~VLCKI~~k~~~ 214 (470)
...++|||||||+|...
T Consensus 152 ~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 152 TKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp ---CCEEEEEEEECC--
T ss_pred ccCCCEEEEEEEEcCCC
Confidence 24579999999999753
No 3
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=73.67 E-value=0.63 Score=41.20 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=8.8
Q ss_pred CCcCeEEEEEeeC
Q 012155 181 EKTNWVMHQYHLG 193 (470)
Q Consensus 181 ~kT~WvMhEY~L~ 193 (470)
..-||+..+++-.
T Consensus 81 QS~GW~HYmih~P 93 (150)
T 1qb3_A 81 QSLGWEHYECHAP 93 (150)
T ss_dssp CCTTCEEESCCCC
T ss_pred cCcCcEEeeecCC
Confidence 3468888777654
No 4
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=52.17 E-value=5 Score=28.81 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=13.7
Q ss_pred ccCCCCCCCCCccccCCC
Q 012155 27 LCGSKQCPGCGHKLEAKP 44 (470)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~ 44 (470)
.-....||.||.+|-.+.
T Consensus 20 ~lP~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 20 VLPGVRCPYCGYKIIFMV 37 (48)
T ss_dssp CCSSSCCTTTCCSCEECC
T ss_pred hCCCcccCccCcEEEEEe
Confidence 345688999999997553
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=51.14 E-value=7.3 Score=30.62 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCCceeCC-ChHHHHHHHHHhhhcCCC
Q 012155 50 PAGVKFDP-TDQELIDHLEAKVEAKDM 75 (470)
Q Consensus 50 PpG~RF~P-TDeELI~yL~~Ki~~~~~ 75 (470)
|.|+.|+. |++||-.||-.|+..+.+
T Consensus 37 ~~~~~~~~it~~eL~~fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEGYLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhCCeE
Confidence 77999999 999999999999987765
No 6
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=39.62 E-value=6.8 Score=31.35 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=26.6
Q ss_pred cchhhhhhhhhhhccCCCCCCCCCccccCC--CCCCCCCCCceeC
Q 012155 14 SSDLIDAKLEEHQLCGSKQCPGCGHKLEAK--PDWLGLPAGVKFD 56 (470)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LPpG~RF~ 56 (470)
.+.|=..|++| -...+|+.||+-.|.. +..-++|||-+|.
T Consensus 14 ~~~~g~~~~~e---m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fe 55 (81)
T 2kn9_A 14 AQTQGPGSMND---YKLFRCIQCGFEYDEALGWPEDGIAAGTRWD 55 (81)
T ss_dssp CCCCCCCCSSC---CCEEEETTTCCEEETTTCBTTTTBCTTCCTT
T ss_pred ecccCCcCCCC---cceEEeCCCCEEEcCCcCCcccCcCCCCChh
Confidence 34444444444 2348899999988854 3456899998874
No 7
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.86 E-value=11 Score=28.74 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=12.8
Q ss_pred cCCCCCCCCCccccCC
Q 012155 28 CGSKQCPGCGHKLEAK 43 (470)
Q Consensus 28 ~~~~~~~~~~~~~~~~ 43 (470)
-....||.||++|--+
T Consensus 36 ~~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 36 KEVIRCRECGHRVMYK 51 (63)
T ss_dssp SSCCCCSSSCCCCCBC
T ss_pred CCceECCCCCcEEEEE
Confidence 3568999999999644
No 8
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=36.88 E-value=12 Score=29.09 Aligned_cols=16 Identities=31% Similarity=0.839 Sum_probs=10.3
Q ss_pred cCCCCCCCCCccccCC
Q 012155 28 CGSKQCPGCGHKLEAK 43 (470)
Q Consensus 28 ~~~~~~~~~~~~~~~~ 43 (470)
.+...||.||++|--+
T Consensus 43 ~d~irCp~CG~RILyK 58 (70)
T 1twf_L 43 TDAVRCKDCGHRILLK 58 (70)
T ss_dssp TSTTCCSSSCCCCCBC
T ss_pred CCCccCCCCCceEeEe
Confidence 3456788888877543
No 9
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=35.27 E-value=19 Score=26.20 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=19.9
Q ss_pred CCCCCCCccccCC--CCCCCCCCCceeC
Q 012155 31 KQCPGCGHKLEAK--PDWLGLPAGVKFD 56 (470)
Q Consensus 31 ~~~~~~~~~~~~~--~~~~~LPpG~RF~ 56 (470)
..|..||+-.|-. ...-++|||-+|.
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~ 31 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFE 31 (52)
T ss_dssp EECSSSCCCCCTTTCCTTTTCCSSCCTT
T ss_pred EEeCCCCeEEcCCcCCcccCcCCCCchH
Confidence 5799999988744 3446899998874
No 10
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=32.82 E-value=21 Score=28.91 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=22.9
Q ss_pred cCCCCCCCCCccccCCC---CCCCCCCCceeCCC
Q 012155 28 CGSKQCPGCGHKLEAKP---DWLGLPAGVKFDPT 58 (470)
Q Consensus 28 ~~~~~~~~~~~~~~~~~---~~~~LPpG~RF~PT 58 (470)
.+...||.||..+.-+. ..-.+|+|..|.|.
T Consensus 46 ~g~~~CpYCg~~y~~~~~~~~~et~p~~c~~~~~ 79 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDPSLSYNQTNPTGCLYNPK 79 (87)
T ss_dssp CCEECCTTTCCEEECCTTSCTTCCCSSCCBCCCS
T ss_pred CCeEECCCCCCEeEcCCCCCcCCcCCCCcEecCc
Confidence 36689999998876332 23368999999875
No 11
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=31.81 E-value=16 Score=26.95 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=19.6
Q ss_pred CCCCCCCccccCC--CCCCCCCCCceeC
Q 012155 31 KQCPGCGHKLEAK--PDWLGLPAGVKFD 56 (470)
Q Consensus 31 ~~~~~~~~~~~~~--~~~~~LPpG~RF~ 56 (470)
..|+.||+-.+-. +..-++|||-+|.
T Consensus 4 y~C~vCGyvYd~~~Gdp~~gi~pGt~fe 31 (54)
T 4rxn_A 4 YTCTVCGYIYDPEDGDPDDGVNPGTDFK 31 (54)
T ss_dssp EEETTTCCEECTTTCBGGGTBCTTCCGG
T ss_pred eECCCCCeEECCCcCCcccCcCCCCChh
Confidence 4799999988744 3345789998885
No 12
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=31.73 E-value=14 Score=27.20 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=20.1
Q ss_pred CCCCCCCccccCC--CCCCCCCCCceeC
Q 012155 31 KQCPGCGHKLEAK--PDWLGLPAGVKFD 56 (470)
Q Consensus 31 ~~~~~~~~~~~~~--~~~~~LPpG~RF~ 56 (470)
..|..||+-.+.. +..-++|||-+|.
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~ 31 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLPEEGIPAGTRWE 31 (55)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCGG
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCChh
Confidence 5799999988754 3456889998874
No 13
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=28.94 E-value=21 Score=35.19 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=31.3
Q ss_pred CCCCCCCCccccCCC--CCCC-CC-CCceeCCChHHHHHHHH
Q 012155 30 SKQCPGCGHKLEAKP--DWLG-LP-AGVKFDPTDQELIDHLE 67 (470)
Q Consensus 30 ~~~~~~~~~~~~~~~--~~~~-LP-pG~RF~PTDeELI~yL~ 67 (470)
|..||+|+..|-.+. .|.. .| -|++|.++-.|.|..|.
T Consensus 24 ~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~~arerI~~L~ 65 (304)
T 2f9y_B 24 WTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLL 65 (304)
T ss_dssp EECCTTTCCCEETTHHHHTTTBCTTTCCBCCCCHHHHHHHHS
T ss_pred HHhhhhccchhhHHHHHHHhCCCCCCCCCCCCCHHHHHHHHC
Confidence 578999999998774 5644 45 89999999999999873
No 14
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=28.86 E-value=19 Score=29.15 Aligned_cols=27 Identities=26% Similarity=0.623 Sum_probs=21.3
Q ss_pred CCCCCCCCccccCC--CCCCCCCCCceeC
Q 012155 30 SKQCPGCGHKLEAK--PDWLGLPAGVKFD 56 (470)
Q Consensus 30 ~~~~~~~~~~~~~~--~~~~~LPpG~RF~ 56 (470)
..+|..||+-.|.. +..-++|||-+|.
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fe 63 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFE 63 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGG
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChh
Confidence 48899999988854 4556899998873
No 15
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=28.65 E-value=17 Score=26.47 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=19.6
Q ss_pred CCCCCCCccccCC--CCCCCCCCCceeC
Q 012155 31 KQCPGCGHKLEAK--PDWLGLPAGVKFD 56 (470)
Q Consensus 31 ~~~~~~~~~~~~~--~~~~~LPpG~RF~ 56 (470)
..|..||+-.+.. +..-++|||-+|.
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~ 30 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFE 30 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGG
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHh
Confidence 4699999988754 3445889998874
No 16
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=27.25 E-value=24 Score=27.27 Aligned_cols=27 Identities=30% Similarity=0.737 Sum_probs=20.9
Q ss_pred CCCCCCCCccccCC--CCCCCCCCCceeC
Q 012155 30 SKQCPGCGHKLEAK--PDWLGLPAGVKFD 56 (470)
Q Consensus 30 ~~~~~~~~~~~~~~--~~~~~LPpG~RF~ 56 (470)
..+|+.||+-.|.. +..-++|||-+|.
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~ 35 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFV 35 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGG
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchh
Confidence 47899999988744 4556899998873
No 17
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=26.42 E-value=35 Score=30.75 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=22.1
Q ss_pred cEEeecC-CCceEEeCCeeeeeeEEEee
Q 012155 144 TRWHKTG-KTRPVMVNGKQKGCKKILVL 170 (470)
Q Consensus 144 G~Wk~tG-~~k~V~~~g~~vG~Kk~l~F 170 (470)
--|.+|| +-+.|..+|++||+...|.+
T Consensus 141 hpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 141 HPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred CCccccCceEEEeeecceEeeeeeeeec
Confidence 4699999 46778899999999877654
No 18
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.02 E-value=56 Score=28.89 Aligned_cols=35 Identities=29% Similarity=0.590 Sum_probs=25.5
Q ss_pred hhhhhhhhh-ccCCCCCCCCCccccCCCCCCCCCCCcee
Q 012155 18 IDAKLEEHQ-LCGSKQCPGCGHKLEAKPDWLGLPAGVKF 55 (470)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~LPpG~RF 55 (470)
+...|.+.. ..+-+.|-+||.. .+.|..+.-|+-.
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~---~P~WaS~n~Gvfi 51 (149)
T 2crw_A 16 ILTIFKRLRSVPTNKVCFDCGAK---NPSWASITYGVFL 51 (149)
T ss_dssp HHHHHHHHHHSTTTSBCSSSCCB---SCCCEETTTTEEC
T ss_pred HHHHHHHHhcCcCCCcCCCCcCC---CCCcEEeccCEEE
Confidence 444555555 5567999999964 6899999888754
No 19
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=22.49 E-value=1.9e+02 Score=24.45 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=24.5
Q ss_pred CCCCC-CCCCCCCcc-----cCC-cceEEeecCCCCCCCCCcccccccccccCCCCCcEEeec
Q 012155 94 GICYT-HPEKLPGVT-----RDG-LSRHFFHRPSKAYTTGTRKRRKIQTECDLQGGETRWHKT 149 (470)
Q Consensus 94 diy~~-~Pw~Lp~~~-----~~g-~~~yFF~~~~~k~~~G~R~~R~~~~~~~~~~g~G~Wk~t 149 (470)
-||.- .|||||-.- .++ ++-+|+.....+...=.+..- .+-++--.||..
T Consensus 40 yIYRMeRPydLPTtvMsvsLS~~~geP~l~a~vSprha~lK~isl------r~~g~h~hwh~h 96 (129)
T 3i9v_7 40 FIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGL------RLPRAHIHLHAH 96 (129)
T ss_dssp HHSCCSSCCCCSCSEEEEEEECSSSCEEEEEEECCSSSSSCCEEE------EETTTTEEEEEE
T ss_pred HHHhhcCcccCCceeEEEEeccCCCCeeEEEecCcchhhhcceEE------ecCCCcceeeee
Confidence 36765 599999642 344 344555433222211111111 122467899976
No 20
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=22.49 E-value=41 Score=25.28 Aligned_cols=23 Identities=39% Similarity=0.772 Sum_probs=14.7
Q ss_pred CCCCCCCccccCCCCCCCCCCCceeCCChH
Q 012155 31 KQCPGCGHKLEAKPDWLGLPAGVKFDPTDQ 60 (470)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~LPpG~RF~PTDe 60 (470)
..||.||-.... |-=-||.|.|-
T Consensus 19 ~~CP~CG~~T~~-------~hParfSp~Dk 41 (60)
T 2apo_B 19 EICPKCGEKTVI-------PKPPKFSLEDR 41 (60)
T ss_dssp SBCSSSCSBCBC-------CCCCCCCTTCT
T ss_pred ccCcCCCCcCCC-------CCCCCCCCCcc
Confidence 567777766532 22248999885
Done!