Query 012156
Match_columns 470
No_of_seqs 276 out of 1095
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 23:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 4.8E-13 1E-17 101.5 5.0 52 260-311 5-59 (60)
2 smart00353 HLH helix loop heli 99.3 3.7E-12 8.1E-17 95.2 6.5 49 264-312 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 2.6E-12 5.7E-17 97.6 5.3 48 261-308 3-55 (55)
4 KOG1318 Helix loop helix trans 99.2 4.6E-11 1E-15 124.2 8.0 65 251-315 225-293 (411)
5 KOG1319 bHLHZip transcription 98.7 8.5E-09 1.8E-13 98.5 3.8 59 260-318 63-128 (229)
6 KOG4304 Transcriptional repres 98.7 1.1E-08 2.5E-13 100.7 2.8 55 258-312 31-93 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.4 1.9E-07 4.2E-12 104.1 5.5 51 260-310 21-75 (803)
8 KOG2588 Predicted DNA-binding 98.2 1E-06 2.2E-11 99.3 3.0 60 258-317 275-335 (953)
9 KOG0561 bHLH transcription fac 98.1 4.1E-06 8.8E-11 85.1 5.2 56 260-315 61-118 (373)
10 KOG2483 Upstream transcription 97.8 3E-05 6.6E-10 76.2 6.2 57 259-315 59-118 (232)
11 KOG3960 Myogenic helix-loop-he 97.8 3E-05 6.4E-10 77.3 6.1 56 263-318 122-179 (284)
12 KOG4029 Transcription factor H 97.7 6.6E-05 1.4E-09 72.4 6.5 60 259-318 109-172 (228)
13 PLN03217 transcription factor 97.0 0.0015 3.3E-08 56.2 5.3 47 271-317 19-71 (93)
14 KOG3910 Helix loop helix trans 96.8 0.00072 1.6E-08 72.8 3.0 61 254-314 521-585 (632)
15 KOG4447 Transcription factor T 95.3 0.0084 1.8E-07 56.5 1.7 51 260-310 79-131 (173)
16 KOG3898 Transcription factor N 93.0 0.073 1.6E-06 53.1 2.9 53 257-309 70-125 (254)
17 PLN02705 beta-amylase 92.3 0.29 6.4E-06 54.6 6.7 20 390-409 189-208 (681)
18 KOG3560 Aryl-hydrocarbon recep 91.6 0.21 4.6E-06 55.1 4.4 41 266-306 32-76 (712)
19 KOG3558 Hypoxia-inducible fact 90.8 0.27 5.9E-06 55.4 4.5 45 262-306 49-97 (768)
20 KOG3559 Transcriptional regula 87.1 0.65 1.4E-05 50.1 4.0 43 266-308 8-54 (598)
21 KOG4395 Transcription factor A 85.4 1.3 2.9E-05 45.0 5.0 52 261-312 176-230 (285)
22 KOG4447 Transcription factor T 52.5 9.5 0.00021 36.6 2.0 45 266-310 29-75 (173)
23 KOG3582 Mlx interactors and re 44.0 6.1 0.00013 45.2 -0.7 57 259-315 651-712 (856)
24 KOG3584 cAMP response element 43.1 22 0.00048 37.2 3.1 39 268-318 290-328 (348)
25 KOG3582 Mlx interactors and re 37.1 9.6 0.00021 43.8 -0.5 61 255-318 783-848 (856)
26 PF15459 RRP14: 60S ribosome b 26.5 33 0.00071 28.1 1.0 15 38-52 6-20 (64)
27 TIGR00986 3a0801s05tom22 mitoc 26.5 42 0.0009 31.8 1.8 38 271-308 48-85 (145)
28 KOG4571 Activating transcripti 24.1 91 0.002 32.6 3.9 65 248-313 224-290 (294)
29 PF08232 Striatin: Striatin fa 23.3 3.9E+02 0.0084 24.5 7.4 45 271-320 27-71 (134)
30 PF02344 Myc-LZ: Myc leucine z 20.1 1E+02 0.0022 22.6 2.4 17 267-283 13-29 (32)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.38 E-value=4.8e-13 Score=101.49 Aligned_cols=52 Identities=38% Similarity=0.647 Sum_probs=49.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHH
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQV 311 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~---~KmDKASIL~eAIdYIK~LQ~qV 311 (470)
+..|+..||+||++||+.|..|+.+||.. .|++|++||+.||+||++|+.++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999998 89999999999999999999876
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.32 E-value=3.7e-12 Score=95.19 Aligned_cols=49 Identities=37% Similarity=0.577 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCC---CCCcchhhHHHHHHHHHHHHHHHHH
Q 012156 264 SIAERLRRERIAERMKALQELVPN---ANKTDKASMLDEIIDYVKFLQLQVK 312 (470)
Q Consensus 264 ~~aERrRReKINer~~aLrsLVP~---~~KmDKASIL~eAIdYIK~LQ~qVk 312 (470)
+..||+||++||+.|..|+.+||. ..|++|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 5689999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.31 E-value=2.6e-12 Score=97.60 Aligned_cols=48 Identities=46% Similarity=0.710 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC-----CCcchhhHHHHHHHHHHHHH
Q 012156 261 DPHSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 308 (470)
Q Consensus 261 ~~H~~aERrRReKINer~~aLrsLVP~~-----~KmDKASIL~eAIdYIK~LQ 308 (470)
..|+..||+||++||+.|.+|+.+||.+ .|++|++||+.||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999999987 68999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.17 E-value=4.6e-11 Score=124.25 Aligned_cols=65 Identities=32% Similarity=0.516 Sum_probs=55.8
Q ss_pred hhhhcccCCCCcccHHHHHHHHHHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 012156 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQLQVKVLS 315 (470)
Q Consensus 251 r~rarr~~ak~~H~~aERrRReKINer~~aLrsLVP~~----~KmDKASIL~eAIdYIK~LQ~qVk~Le 315 (470)
+...|.+++|+.|+++|||||++||++|++|..|||.| .|..|..||..+++||++||+..++..
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~ 293 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAR 293 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 34444556689999999999999999999999999999 367799999999999999999777443
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.71 E-value=8.5e-09 Score=98.52 Aligned_cols=59 Identities=36% Similarity=0.511 Sum_probs=52.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC-------CCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA-------NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~-------~KmDKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (470)
+..|.-+||+||+-||..+..|+.|||.| .|+.||.||.++|+||.+|++++.+.+.+.
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~ 128 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEV 128 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999987 378899999999999999999888776543
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.65 E-value=1.1e-08 Score=100.73 Aligned_cols=55 Identities=27% Similarity=0.446 Sum_probs=48.4
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhhcCCC--------CCcchhhHHHHHHHHHHHHHHHHH
Q 012156 258 QATDPHSIAERLRRERIAERMKALQELVPNA--------NKTDKASMLDEIIDYVKFLQLQVK 312 (470)
Q Consensus 258 ~ak~~H~~aERrRReKINer~~aLrsLVP~~--------~KmDKASIL~eAIdYIK~LQ~qVk 312 (470)
.++..|-++|||||.|||+.|.+|+.||+.+ .|++||.||+.|++|+|.||....
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3456788999999999999999999999954 578899999999999999997543
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.44 E-value=1.9e-07 Score=104.15 Aligned_cols=51 Identities=27% Similarity=0.500 Sum_probs=48.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHHHHHH
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQLQ 310 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~----~KmDKASIL~eAIdYIK~LQ~q 310 (470)
+.+|+.+|||||+|+|..|.+|.+|||.| .|+||.+||.+||++||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999998 5999999999999999999885
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.16 E-value=1e-06 Score=99.32 Aligned_cols=60 Identities=30% Similarity=0.494 Sum_probs=55.2
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhhcCCC-CCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 012156 258 QATDPHSIAERLRRERIAERMKALQELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 258 ~ak~~H~~aERrRReKINer~~aLrsLVP~~-~KmDKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (470)
.+|.+||++|||.|..||++|.+|+.+||+. .|+.|..+|..||+||++|+...+.|+..
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~ 335 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLE 335 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchh
Confidence 6689999999999999999999999999987 79999999999999999999977776544
No 9
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.07 E-value=4.1e-06 Score=85.15 Aligned_cols=56 Identities=27% Similarity=0.396 Sum_probs=49.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQVKVLS 315 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~--~KmDKASIL~eAIdYIK~LQ~qVk~Le 315 (470)
+.--|..||||-.-||..|..||.|||.- .|+.||.||+.+.+||.+|+.+.-+|-
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 34457789999999999999999999964 799999999999999999998766553
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.82 E-value=3e-05 Score=76.24 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=48.6
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCCC--Ccc-hhhHHHHHHHHHHHHHHHHHHHh
Q 012156 259 ATDPHSIAERLRRERIAERMKALQELVPNAN--KTD-KASMLDEIIDYVKFLQLQVKVLS 315 (470)
Q Consensus 259 ak~~H~~aERrRReKINer~~aLrsLVP~~~--KmD-KASIL~eAIdYIK~LQ~qVk~Le 315 (470)
.+..||..||+||..|+++|..|+.+||... +.. .++||.+|++||+.|+.+....+
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~ 118 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ 118 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence 3567999999999999999999999999762 222 68999999999999998766554
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.82 E-value=3e-05 Score=77.30 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhc-CCC-CCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 012156 263 HSIAERLRRERIAERMKALQELV-PNA-NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 263 H~~aERrRReKINer~~aLrsLV-P~~-~KmDKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (470)
-.+.||||-+|+||.|.+|++-- ++. .++-|..||..||+||..||.-++++...+
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45889999999999999998754 443 678999999999999999999999987554
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.72 E-value=6.6e-05 Score=72.36 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 012156 259 ATDPHSIAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 259 ak~~H~~aERrRReKINer~~aLrsLVP~~----~KmDKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (470)
.+..++.+||+|=+.+|..|..||.+||.. .|+.|..+|..||+||++|++-++.-+...
T Consensus 109 ~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 109 QRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 345578889999999999999999999953 689999999999999999998887765443
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.95 E-value=0.0015 Score=56.19 Aligned_cols=47 Identities=28% Similarity=0.482 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhcCCC------CCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 012156 271 RERIAERMKALQELVPNA------NKTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 271 ReKINer~~aLrsLVP~~------~KmDKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (470)
-+.|++.+..|+.|+|.. .|..-+-||+|++.||+.|+.+|..|.+.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999964 35556779999999999999999999865
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.83 E-value=0.00072 Score=72.83 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=51.0
Q ss_pred hcccCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCc----chhhHHHHHHHHHHHHHHHHHHH
Q 012156 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT----DKASMLDEIIDYVKFLQLQVKVL 314 (470)
Q Consensus 254 arr~~ak~~H~~aERrRReKINer~~aLrsLVP~~~Km----DKASIL~eAIdYIK~LQ~qVk~L 314 (470)
.|.+.++...|.+||.|-+.|||.|++|.++.----|. .|.-||..||.-|-.|++||++-
T Consensus 521 eREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 521 EREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 34556677889999999999999999999987644333 38999999999999999999874
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.32 E-value=0.0084 Score=56.53 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=46.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcchhhHHHHHHHHHHHHHHH
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQ 310 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~--~KmDKASIL~eAIdYIK~LQ~q 310 (470)
+..|++.||+|-..+|+.|..||.+||.. +|+.|.-.|.-|..||.+|-.-
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence 45699999999999999999999999975 8999999999999999999753
No 16
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=93.02 E-value=0.073 Score=53.12 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=45.0
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHH
Q 012156 257 GQATDPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQL 309 (470)
Q Consensus 257 ~~ak~~H~~aERrRReKINer~~aLrsLVP~~---~KmDKASIL~eAIdYIK~LQ~ 309 (470)
..++..-|..||+|--.+|+.|+.||++||.. .|+.|...|.-|-.||..|++
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 34455667889999999999999999999953 688999999999999988874
No 17
>PLN02705 beta-amylase
Probab=92.33 E-value=0.29 Score=54.64 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=11.4
Q ss_pred EEeecchhHHHHhhhhccCC
Q 012156 390 CLMPISLATAISTATCHSRN 409 (470)
Q Consensus 390 CLVP~SlataI~t~ta~~~~ 409 (470)
.|-|.||-+++++...++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~ 208 (681)
T PLN02705 189 SLSPVSLDSVVIAESDHPGN 208 (681)
T ss_pred ccCcccccceeeeccccccc
Confidence 35666666666655444443
No 18
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=91.55 E-value=0.21 Score=55.13 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHH
Q 012156 266 AERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKF 306 (470)
Q Consensus 266 aERrRReKINer~~aLrsLVP~~----~KmDKASIL~eAIdYIK~ 306 (470)
--||-|+|+|..++.|.+|+|-. .|+||.+||.-+|.|++.
T Consensus 32 PSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 32 PSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred cchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 35778999999999999999954 799999999999999864
No 19
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=90.79 E-value=0.27 Score=55.42 Aligned_cols=45 Identities=31% Similarity=0.459 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHH
Q 012156 262 PHSIAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKF 306 (470)
Q Consensus 262 ~H~~aERrRReKINer~~aLrsLVP~~----~KmDKASIL~eAIdYIK~ 306 (470)
.-.-+-|.||-|-|+.|.+|..+||-. ..+|||+|+.-||.|+|-
T Consensus 49 kSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 49 KSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 334567999999999999999999943 579999999999999874
No 20
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=87.14 E-value=0.65 Score=50.08 Aligned_cols=43 Identities=35% Similarity=0.478 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHHHH
Q 012156 266 AERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQ 308 (470)
Q Consensus 266 aERrRReKINer~~aLrsLVP~~----~KmDKASIL~eAIdYIK~LQ 308 (470)
+.|.||++-|..|.+|.+++|-. ..+||++|+.-+..|||.-.
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 46899999999999999999954 56999999999999998644
No 21
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=85.39 E-value=1.3 Score=45.01 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=45.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHHH
Q 012156 261 DPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVK 312 (470)
Q Consensus 261 ~~H~~aERrRReKINer~~aLrsLVP~~---~KmDKASIL~eAIdYIK~LQ~qVk 312 (470)
..-+..||+|-..+|..|+.||.+||.. .|+.|-..|..|-.||-.|-..++
T Consensus 176 ~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 176 LAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred cccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 4567889999999999999999999976 578888999999999998876553
No 22
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=52.46 E-value=9.5 Score=36.58 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC--CCcchhhHHHHHHHHHHHHHHH
Q 012156 266 AERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQ 310 (470)
Q Consensus 266 aERrRReKINer~~aLrsLVP~~--~KmDKASIL~eAIdYIK~LQ~q 310 (470)
.||.|..++++.+.-|+.|+|+. +++.+---|..+-+||.+|.+-
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~ 75 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDEL 75 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHH
Confidence 48889999999999999999986 4444444477777777777653
No 23
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=44.04 E-value=6.1 Score=45.23 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=47.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCC-----CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 012156 259 ATDPHSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQLQVKVLS 315 (470)
Q Consensus 259 ak~~H~~aERrRReKINer~~aLrsLVP~~-----~KmDKASIL~eAIdYIK~LQ~qVk~Le 315 (470)
+...|.-+|.+||..|+-.|..|-+++... .|+.+..-+..++.||.-++.+...+.
T Consensus 651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~ 712 (856)
T KOG3582|consen 651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQ 712 (856)
T ss_pred CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccc
Confidence 456799999999999999999999999865 467777789999999998887665554
No 24
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=43.06 E-value=22 Score=37.25 Aligned_cols=39 Identities=33% Similarity=0.485 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 012156 268 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 268 RrRReKINer~~aLrsLVP~~~KmDKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (470)
|||--|+-..-.+-|+ |.+..| +|||+|+.+|.+||...
T Consensus 290 rKRevRLmKNREAARE----CRRKKK--------EYVKCLENRVAVLENQN 328 (348)
T KOG3584|consen 290 RKREVRLMKNREAARE----CRRKKK--------EYVKCLENRVAVLENQN 328 (348)
T ss_pred hHHHHHHHhhHHHHHH----HHHhHh--------HHHHHHHhHHHHHhccc
No 25
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=37.07 E-value=9.6 Score=43.76 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=49.9
Q ss_pred cccCCCCcccHHHHHHHHHHHHHHHHHHhhcCCC-----CCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 012156 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 255 rr~~ak~~H~~aERrRReKINer~~aLrsLVP~~-----~KmDKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (470)
+.+.....|.-.|||||-.+-++|..|-.|+|.. .++.+.+||. +.||.++..-+.+.++.
T Consensus 783 ~n~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 783 FNGMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred ccceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 3344556688899999999999999999999965 4578999998 89999998888776644
No 26
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=26.54 E-value=33 Score=28.10 Aligned_cols=15 Identities=27% Similarity=0.720 Sum_probs=13.8
Q ss_pred CchhHHHHHHhCCCC
Q 012156 38 SQDDFLEQMLSSLPS 52 (470)
Q Consensus 38 ~~ddf~~qmls~lp~ 52 (470)
.|++|||.+|+-+|+
T Consensus 6 ~h~~~Fd~Ll~LIPA 20 (64)
T PF15459_consen 6 AHSSFFDGLLSLIPA 20 (64)
T ss_pred HHHHHHHHHHHhCCh
Confidence 589999999999987
No 27
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=26.48 E-value=42 Score=31.82 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHH
Q 012156 271 RERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308 (470)
Q Consensus 271 ReKINer~~aLrsLVP~~~KmDKASIL~eAIdYIK~LQ 308 (470)
-+-|-+||.+|+.+||+..+.--.++..-+..++|.+=
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~ 85 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKSTL 85 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999998877666667777777777653
No 28
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.15 E-value=91 Score=32.62 Aligned_cols=65 Identities=28% Similarity=0.418 Sum_probs=34.1
Q ss_pred chhhhhhcccCCCC-cccHHHHHHHHHHHHHHHHHHhhcCCCCC-cchhhHHHHHHHHHHHHHHHHHH
Q 012156 248 PKQRVRARRGQATD-PHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKV 313 (470)
Q Consensus 248 ~k~r~rarr~~ak~-~H~~aERrRReKINer~~aLrsLVP~~~K-mDKASIL~eAIdYIK~LQ~qVk~ 313 (470)
+.++.+++|.+.+. +-..++|+|+++ ...+.+|..|=-.-.+ .+.++=|++=|+|+|.|-..+..
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~-E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEK-EALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443 334445555432 2233344333211111 35888899999999998766543
No 29
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=23.31 E-value=3.9e+02 Score=24.49 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcccC
Q 012156 271 RERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 320 (470)
Q Consensus 271 ReKINer~~aLrsLVP~~~KmDKASIL~eAIdYIK~LQ~qVk~Le~~rl~ 320 (470)
|..|..+|..|..=. | .--.+-.+-+.|||.|+..++....++..
T Consensus 27 RaEmkarIa~LEGE~----r-~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 27 RAEMKARIAFLEGER----R-GQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777777776411 1 12234556689999999999888776543
No 30
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=20.13 E-value=1e+02 Score=22.56 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012156 267 ERLRRERIAERMKALQE 283 (470)
Q Consensus 267 ERrRReKINer~~aLrs 283 (470)
=|+||+.++.++..||.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37889999999999885
Done!