Query 012156
Match_columns 470
No_of_seqs 276 out of 1095
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 03:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 4.6E-16 1.6E-20 127.6 3.9 59 260-318 7-66 (82)
2 4ati_A MITF, microphthalmia-as 99.6 2.7E-15 9.1E-20 130.9 7.6 67 251-317 19-89 (118)
3 1an4_A Protein (upstream stimu 99.5 2.9E-15 9.9E-20 117.2 3.0 54 258-311 4-63 (65)
4 1a0a_A BHLH, protein (phosphat 99.5 1.8E-15 6.3E-20 119.1 1.3 54 259-312 2-62 (63)
5 4h10_B Circadian locomoter out 99.5 5.4E-15 1.8E-19 119.6 3.8 56 260-315 9-65 (71)
6 4h10_A ARYL hydrocarbon recept 99.5 6.6E-15 2.3E-19 119.3 0.7 51 259-309 9-63 (73)
7 1hlo_A Protein (transcription 99.4 1.2E-13 4.1E-18 112.3 6.0 59 260-318 13-73 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 1.3E-13 4.4E-18 112.5 6.1 59 260-318 3-63 (83)
9 3u5v_A Protein MAX, transcript 99.4 2.2E-13 7.5E-18 111.1 5.0 59 259-317 5-67 (76)
10 1nkp_A C-MYC, MYC proto-oncoge 99.4 4.7E-13 1.6E-17 111.4 6.3 58 260-317 7-67 (88)
11 1nlw_A MAD protein, MAX dimeri 99.3 4E-12 1.4E-16 104.3 5.7 58 261-318 3-63 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.1 2.5E-11 8.7E-16 97.2 2.4 52 260-311 13-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 3E-10 1E-14 88.8 5.8 52 261-312 4-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 3E-10 1E-14 111.7 5.9 54 258-311 11-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 5.8E-10 2E-14 111.2 3.1 50 260-309 14-67 (387)
16 2lfh_A DNA-binding protein inh 98.7 3.8E-09 1.3E-13 85.1 2.6 44 266-309 21-67 (68)
17 4ath_A MITF, microphthalmia-as 98.6 8E-08 2.7E-12 80.0 6.3 48 270-317 3-54 (83)
18 4aya_A DNA-binding protein inh 98.1 3.2E-06 1.1E-10 72.2 6.6 48 267-314 33-83 (97)
19 3fx7_A Putative uncharacterize 51.7 25 0.00086 29.8 5.6 24 297-320 65-88 (94)
20 3muj_A Transcription factor CO 42.0 32 0.0011 31.0 5.0 35 273-307 95-133 (138)
21 2wt7_A Proto-oncogene protein 32.0 74 0.0025 24.3 5.0 38 267-317 1-38 (63)
22 2pk2_A Cyclin-T1, protein TAT; 29.2 12 0.00039 37.5 0.0 10 40-49 154-163 (358)
23 1p3q_Q VPS9P, vacuolar protein 24.9 75 0.0026 24.4 3.9 26 265-290 3-28 (54)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.59 E-value=4.6e-16 Score=127.63 Aligned_cols=59 Identities=29% Similarity=0.493 Sum_probs=55.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC-CCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~-~KmDKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (470)
+..|+++||+||++||++|.+|+.|||++ .|+||++||.+||+||++||.+++.|+...
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~ 66 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999998 899999999999999999999999998764
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.57 E-value=2.7e-15 Score=130.85 Aligned_cols=67 Identities=33% Similarity=0.509 Sum_probs=51.8
Q ss_pred hhhhcccCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCC----CcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 012156 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN----KTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 251 r~rarr~~ak~~H~~aERrRReKINer~~aLrsLVP~~~----KmDKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (470)
+...++..++..|+++||+||++||++|.+|+.|||.+. |++|++||.+||+||++||.+++.|+..
T Consensus 19 ~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 19 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667899999999999999999999999999884 6789999999999999999999999864
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=2.9e-15 Score=117.22 Aligned_cols=54 Identities=24% Similarity=0.472 Sum_probs=50.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhhcCCCC------CcchhhHHHHHHHHHHHHHHHH
Q 012156 258 QATDPHSIAERLRRERIAERMKALQELVPNAN------KTDKASMLDEIIDYVKFLQLQV 311 (470)
Q Consensus 258 ~ak~~H~~aERrRReKINer~~aLrsLVP~~~------KmDKASIL~eAIdYIK~LQ~qV 311 (470)
.++..|+++||+||++||+.|.+|+.|||.+. |++|++||.+||+||++||+++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999885 7899999999999999999865
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.51 E-value=1.8e-15 Score=119.13 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=48.9
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCC-------CCcchhhHHHHHHHHHHHHHHHHH
Q 012156 259 ATDPHSIAERLRRERIAERMKALQELVPNA-------NKTDKASMLDEIIDYVKFLQLQVK 312 (470)
Q Consensus 259 ak~~H~~aERrRReKINer~~aLrsLVP~~-------~KmDKASIL~eAIdYIK~LQ~qVk 312 (470)
++.+|+++||+||++||+.|.+|+.|||.+ .|++|++||+.||+||++||++|+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999966 456799999999999999998763
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.51 E-value=5.4e-15 Score=119.62 Aligned_cols=56 Identities=23% Similarity=0.381 Sum_probs=52.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC-CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLS 315 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~-~KmDKASIL~eAIdYIK~LQ~qVk~Le 315 (470)
+.+|+++||+||++||++|.+|++|||.. .|+||++||+.||+||++||.++.=|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 46799999999999999999999999975 699999999999999999999987765
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=6.6e-15 Score=119.33 Aligned_cols=51 Identities=31% Similarity=0.460 Sum_probs=47.4
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHHHHH
Q 012156 259 ATDPHSIAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQL 309 (470)
Q Consensus 259 ak~~H~~aERrRReKINer~~aLrsLVP~~----~KmDKASIL~eAIdYIK~LQ~ 309 (470)
++..|+++||+||++||+.|.+|+.|||.| .|+||++||+.||+|||.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999987 699999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=1.2e-13 Score=112.31 Aligned_cols=59 Identities=24% Similarity=0.495 Sum_probs=55.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~--~KmDKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (470)
+..|+.+||+||.+||+.|..|+.+||.+ .|++|++||..||+||++|+.+++.|+...
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999986 699999999999999999999999998764
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.42 E-value=1.3e-13 Score=112.48 Aligned_cols=59 Identities=24% Similarity=0.495 Sum_probs=54.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~--~KmDKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (470)
+..|+.+||+||++||+.|..|+.+||.+ .|++|++||..||+||++|+.+++.|+...
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999985 799999999999999999999999987654
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.39 E-value=2.2e-13 Score=111.11 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCC---CCCc-chhhHHHHHHHHHHHHHHHHHHHhhc
Q 012156 259 ATDPHSIAERLRRERIAERMKALQELVPN---ANKT-DKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 259 ak~~H~~aERrRReKINer~~aLrsLVP~---~~Km-DKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (470)
++..|+..||+||++||+.|.+|+.+||. ..|. .|.+||..||+||++||+++++++.-
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~ 67 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN 67 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999995 3555 79999999999999999999998764
No 10
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=4.7e-13 Score=111.42 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=53.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~---~KmDKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (470)
+..|++.||+||++||++|..|+.+||.+ .|++|++||.+||+||++|+.+.+.|...
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999975 59999999999999999999999887654
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.26 E-value=4e-12 Score=104.34 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=53.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 012156 261 DPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 261 ~~H~~aERrRReKINer~~aLrsLVP~~---~KmDKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (470)
..|+..||+||..||+.|..|+++||.+ .|++|++||.+|++||++|+++.+.|+...
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999965 688999999999999999999999887653
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.09 E-value=2.5e-11 Score=97.16 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=47.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcchhhHHHHHHHHHHHHHHHH
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQV 311 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP~~--~KmDKASIL~eAIdYIK~LQ~qV 311 (470)
+..|+..||+|+..||+.|..||.+||.. .|++|..||..||+||++|++.+
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999975 78999999999999999999865
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.02 E-value=3e-10 Score=88.82 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHHH
Q 012156 261 DPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVK 312 (470)
Q Consensus 261 ~~H~~aERrRReKINer~~aLrsLVP~~---~KmDKASIL~eAIdYIK~LQ~qVk 312 (470)
..|+..||+|+..||+.|..||.+||.. .|++|..||..||+||++|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3588999999999999999999999965 589999999999999999998763
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=3e-10 Score=111.74 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=42.8
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhhcC-CCCCcchhhHHHHHHHHHHHHHHHH
Q 012156 258 QATDPHSIAERLRRERIAERMKALQELVP-NANKTDKASMLDEIIDYVKFLQLQV 311 (470)
Q Consensus 258 ~ak~~H~~aERrRReKINer~~aLrsLVP-~~~KmDKASIL~eAIdYIK~LQ~qV 311 (470)
.++..|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+...
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 44678999999999999999999999999 4579999999999999999998643
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.87 E-value=5.8e-10 Score=111.23 Aligned_cols=50 Identities=30% Similarity=0.439 Sum_probs=46.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcC----CCCCcchhhHHHHHHHHHHHHHH
Q 012156 260 TDPHSIAERLRRERIAERMKALQELVP----NANKTDKASMLDEIIDYVKFLQL 309 (470)
Q Consensus 260 k~~H~~aERrRReKINer~~aLrsLVP----~~~KmDKASIL~eAIdYIK~LQ~ 309 (470)
+.+|+.+||+||+|||+.|.+|+.||| ...|+||++||..||+|||.|+.
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 568999999999999999999999999 45899999999999999999984
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.72 E-value=3.8e-09 Score=85.09 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHH
Q 012156 266 AERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQL 309 (470)
Q Consensus 266 aERrRReKINer~~aLrsLVP~~---~KmDKASIL~eAIdYIK~LQ~ 309 (470)
.||+|+..||+.|..||++||.. .|++|..||..||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 48899999999999999999975 689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.56 E-value=8e-08 Score=80.02 Aligned_cols=48 Identities=27% Similarity=0.428 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 012156 270 RRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 270 RReKINer~~aLrsLVP~~----~KmDKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (470)
-|..||++|.+|..|||.+ .|.+|.+||..+|+||++||+.++.+.+.
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999976 47899999999999999999988877654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.15 E-value=3.2e-06 Score=72.21 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHHHHH
Q 012156 267 ERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVKVL 314 (470)
Q Consensus 267 ERrRReKINer~~aLrsLVP~~---~KmDKASIL~eAIdYIK~LQ~qVk~L 314 (470)
||.|-..||+.|..||.+||.. .|+.|..+|..||+||++|++.++.-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778889999999999999965 68999999999999999999887664
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=51.67 E-value=25 Score=29.80 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC
Q 012156 297 LDEIIDYVKFLQLQVKVLSMSRLG 320 (470)
Q Consensus 297 L~eAIdYIK~LQ~qVk~Le~~rl~ 320 (470)
.+.+=+||.+|.++|+.|++.++.
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~~~ 88 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDYLE 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHhHHHHHHHHHhHHHHHH
Confidence 457889999999999999998753
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=41.95 E-value=32 Score=31.03 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHHH
Q 012156 273 RIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFL 307 (470)
Q Consensus 273 KINer~~aLrsLVP~~----~KmDKASIL~eAIdYIK~L 307 (470)
.|...|..|+++||.. .++-|-.||.+|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4788999999999954 5788999999999998876
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.04 E-value=74 Score=24.32 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 012156 267 ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 267 ERrRReKINer~~aLrsLVP~~~KmDKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (470)
||++|.+...++.+.+. =..-.+||..|+.+|..|+..
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~ 38 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDE 38 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566655553 122345555555555555544
No 22
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=29.21 E-value=12 Score=37.49 Aligned_cols=10 Identities=0% Similarity=-0.077 Sum_probs=4.4
Q ss_pred hhHHHHHHhC
Q 012156 40 DDFLEQMLSS 49 (470)
Q Consensus 40 ddf~~qmls~ 49 (470)
-+||..++..
T Consensus 154 ~~fL~~~~~~ 163 (358)
T 2pk2_A 154 HTHVVKCTQL 163 (358)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 23
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=24.93 E-value=75 Score=24.38 Aligned_cols=26 Identities=12% Similarity=0.461 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC
Q 012156 265 IAERLRRERIAERMKALQELVPNANK 290 (470)
Q Consensus 265 ~aERrRReKINer~~aLrsLVP~~~K 290 (470)
.++|-+|...++-+.+|+.+.|..++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57888999999999999999996543
Done!