Query 012157
Match_columns 470
No_of_seqs 136 out of 1725
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 23:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02344 chap_CCT_gamma T-com 100.0 5.1E-97 1E-101 777.4 54.5 462 6-468 3-464 (525)
2 TIGR02339 thermosome_arch ther 100.0 6.3E-97 1E-101 775.7 55.1 460 6-468 3-463 (519)
3 KOG0361 Chaperonin complex com 100.0 1.9E-98 4E-103 704.7 36.0 460 1-469 2-467 (543)
4 cd03343 cpn60 cpn60 chaperonin 100.0 1.9E-95 4E-100 765.3 54.9 458 7-468 3-460 (517)
5 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2.8E-95 6E-100 763.7 55.3 461 2-468 4-470 (526)
6 TIGR02343 chap_CCT_epsi T-comp 100.0 2.7E-95 6E-100 762.7 54.6 460 3-468 9-474 (532)
7 TIGR02347 chap_CCT_zeta T-comp 100.0 6.3E-95 1.4E-99 758.1 56.4 457 5-468 2-469 (531)
8 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1E-94 2.2E-99 759.6 55.2 452 14-468 3-461 (527)
9 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2.7E-94 5.9E-99 756.3 55.5 454 6-468 3-462 (522)
10 PTZ00212 T-complex protein 1 s 100.0 6.4E-94 1.4E-98 753.2 55.4 454 4-468 7-469 (533)
11 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.2E-93 2.7E-98 749.1 55.8 450 8-468 2-457 (517)
12 TIGR02342 chap_CCT_delta T-com 100.0 2.4E-93 5.2E-98 746.9 55.2 451 14-468 4-460 (517)
13 TIGR02345 chap_CCT_eta T-compl 100.0 2.3E-93 5.1E-98 747.9 54.2 457 3-468 2-463 (522)
14 TIGR02340 chap_CCT_alpha T-com 100.0 4.8E-93 1E-97 747.8 56.0 453 13-468 6-465 (536)
15 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.1E-92 2.4E-97 743.6 55.0 451 13-468 2-459 (515)
16 TIGR02346 chap_CCT_theta T-com 100.0 4.8E-92 1.1E-96 737.9 55.7 453 7-468 5-461 (531)
17 TIGR02341 chap_CCT_beta T-comp 100.0 7.2E-92 1.6E-96 734.8 56.2 451 7-468 2-458 (519)
18 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4E-91 8.7E-96 723.9 49.3 420 6-468 3-423 (480)
19 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.7E-90 3.6E-95 719.4 51.2 424 9-468 2-426 (484)
20 KOG0358 Chaperonin complex com 100.0 1.1E-91 2.3E-96 658.0 32.6 451 14-469 21-478 (534)
21 cd00309 chaperonin_type_I_II c 100.0 4.3E-86 9.2E-91 686.7 49.2 407 14-468 3-409 (464)
22 KOG0363 Chaperonin complex com 100.0 2.7E-87 6E-92 625.5 35.4 456 3-469 2-463 (527)
23 cd03341 TCP1_theta TCP-1 (CTT 100.0 8.2E-86 1.8E-90 682.8 49.6 407 15-468 4-413 (472)
24 COG0459 GroL Chaperonin GroEL 100.0 1E-84 2.2E-89 671.4 46.0 449 11-469 3-459 (524)
25 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.2E-83 2.6E-88 674.9 48.1 426 31-468 1-428 (485)
26 KOG0364 Chaperonin complex com 100.0 1.2E-85 2.6E-90 627.5 25.5 465 1-469 1-465 (527)
27 PRK12849 groEL chaperonin GroE 100.0 4.9E-80 1.1E-84 645.1 48.6 405 14-469 5-471 (542)
28 PRK00013 groEL chaperonin GroE 100.0 7.5E-80 1.6E-84 643.8 46.9 406 13-468 4-470 (542)
29 KOG0360 Chaperonin complex com 100.0 9.9E-82 2.2E-86 606.1 29.7 453 13-469 13-472 (545)
30 cd03344 GroEL GroEL_like type 100.0 3.5E-79 7.5E-84 637.3 48.0 404 14-468 3-468 (520)
31 PTZ00114 Heat shock protein 60 100.0 5.7E-79 1.2E-83 640.3 48.6 406 13-468 16-486 (555)
32 PRK12851 groEL chaperonin GroE 100.0 8.7E-79 1.9E-83 636.4 47.9 406 13-468 5-471 (541)
33 TIGR02348 GroEL chaperonin Gro 100.0 7.4E-79 1.6E-83 636.1 47.1 405 13-468 3-469 (524)
34 KOG0362 Chaperonin complex com 100.0 5.2E-79 1.1E-83 591.2 41.3 449 6-468 12-464 (537)
35 PRK12850 groEL chaperonin GroE 100.0 6.5E-78 1.4E-82 630.2 48.4 406 13-468 5-471 (544)
36 PRK12852 groEL chaperonin GroE 100.0 3.7E-77 8.1E-82 626.0 47.2 404 14-468 6-471 (545)
37 CHL00093 groEL chaperonin GroE 100.0 2.7E-76 5.9E-81 617.4 43.6 408 13-468 4-472 (529)
38 PRK14104 chaperonin GroEL; Pro 100.0 1.8E-75 3.9E-80 611.3 46.1 405 13-468 5-471 (546)
39 PLN03167 Chaperonin-60 beta su 100.0 8.9E-75 1.9E-79 609.1 40.9 408 13-468 58-527 (600)
40 KOG0359 Chaperonin complex com 100.0 1.9E-74 4.2E-79 550.0 24.8 453 7-469 5-461 (520)
41 KOG0357 Chaperonin complex com 100.0 7.1E-61 1.5E-65 444.3 20.6 327 2-469 9-339 (400)
42 KOG0356 Mitochondrial chaperon 100.0 2.7E-49 5.9E-54 390.2 31.5 405 13-467 18-485 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 1.5E-41 3.4E-46 324.6 26.5 234 164-407 17-256 (261)
44 cd03333 chaperonin_like chaper 100.0 9.3E-37 2E-41 284.2 24.3 208 148-404 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 3.4E-23 7.4E-28 224.5 16.4 238 165-412 332-574 (1598)
46 COG1433 Uncharacterized conser 70.9 17 0.00037 30.4 6.6 51 278-329 57-107 (121)
47 PF02579 Nitro_FeMo-Co: Dinitr 68.4 16 0.00035 28.5 5.8 37 278-315 45-81 (94)
48 cd00851 MTH1175 This uncharact 66.3 15 0.00033 29.2 5.4 39 277-316 54-92 (103)
49 cd00562 NifX_NifB This CD repr 56.1 33 0.00071 27.1 5.6 37 279-316 54-90 (102)
50 PRK13600 putative ribosomal pr 55.0 59 0.0013 25.3 6.5 49 276-324 19-71 (84)
51 PRK07283 hypothetical protein; 53.6 55 0.0012 26.2 6.4 50 277-329 25-78 (98)
52 PRK13602 putative ribosomal pr 45.0 74 0.0016 24.5 5.7 51 277-330 18-72 (82)
53 PRK04175 rpl7ae 50S ribosomal 42.8 95 0.0021 26.0 6.5 51 276-329 36-91 (122)
54 TIGR03677 rpl7ae 50S ribosomal 42.5 95 0.002 25.7 6.4 51 276-329 32-87 (117)
55 PRK06683 hypothetical protein; 42.2 1.1E+02 0.0023 23.7 6.2 51 277-330 18-72 (82)
56 PRK07714 hypothetical protein; 40.7 1.2E+02 0.0026 24.3 6.5 51 277-330 25-79 (100)
57 cd01143 YvrC Periplasmic bindi 40.2 90 0.002 27.7 6.6 51 279-329 53-110 (195)
58 PF02603 Hpr_kinase_N: HPr Ser 38.4 38 0.00082 28.5 3.4 52 264-315 59-112 (127)
59 cd01144 BtuF Cobalamin binding 37.7 97 0.0021 28.8 6.6 52 279-330 50-108 (245)
60 PF07278 DUF1441: Protein of u 37.5 54 0.0012 28.6 4.2 67 380-462 62-128 (152)
61 PTZ00106 60S ribosomal protein 36.2 1.3E+02 0.0028 24.6 6.1 52 276-330 31-87 (108)
62 TIGR03659 IsdE heme ABC transp 36.2 89 0.0019 30.2 6.2 52 279-330 84-141 (289)
63 PRK09534 btuF corrinoid ABC tr 36.0 93 0.002 31.3 6.4 51 279-329 112-169 (359)
64 PRK13601 putative L7Ae-like ri 34.7 1.8E+02 0.0038 22.5 6.3 51 277-330 15-69 (82)
65 cd00852 NifB NifB belongs to a 33.3 1.3E+02 0.0029 24.0 5.8 31 285-316 64-94 (106)
66 PF01248 Ribosomal_L7Ae: Ribos 32.8 88 0.0019 24.5 4.6 52 276-330 21-77 (95)
67 TIGR00129 fdhD_narQ formate de 32.8 61 0.0013 30.6 4.2 42 277-318 183-224 (237)
68 TIGR03151 enACPred_II putative 32.1 1.7E+02 0.0037 28.8 7.4 56 277-332 78-133 (307)
69 PRK00724 formate dehydrogenase 30.2 69 0.0015 30.7 4.2 42 277-318 212-253 (263)
70 cd04743 NPD_PKS 2-Nitropropane 30.0 1.7E+02 0.0037 29.0 6.9 55 277-332 73-127 (320)
71 PRK01018 50S ribosomal protein 29.7 2.3E+02 0.0049 22.6 6.5 51 277-330 23-78 (99)
72 PF07905 PucR: Purine cataboli 29.1 2.1E+02 0.0046 23.7 6.5 43 275-317 61-108 (123)
73 cd00853 NifX NifX belongs to a 28.2 1.7E+02 0.0037 23.2 5.6 31 285-316 60-90 (102)
74 PRK05583 ribosomal protein L7A 27.5 2.5E+02 0.0054 22.7 6.4 51 277-330 24-78 (104)
75 PF07685 GATase_3: CobB/CobQ-l 27.4 1.5E+02 0.0033 25.8 5.6 52 372-423 9-60 (158)
76 PF12846 AAA_10: AAA-like doma 26.6 1.6E+02 0.0034 28.1 6.1 57 274-330 241-302 (304)
77 KOG2663 Acetolactate synthase, 26.0 70 0.0015 30.2 3.2 28 372-400 121-148 (309)
78 COG3962 Acetolactate synthase 26.0 67 0.0015 33.3 3.3 39 389-428 217-255 (617)
79 cd01141 TroA_d Periplasmic bin 25.9 95 0.002 27.5 4.1 50 279-328 62-119 (186)
80 TIGR02663 nifX nitrogen fixati 25.0 2.7E+02 0.0059 22.9 6.4 44 285-329 62-109 (119)
81 PRK03379 vitamin B12-transport 25.0 1.8E+02 0.0039 27.5 6.1 51 279-329 65-122 (260)
82 COG1358 RPL8A Ribosomal protei 24.9 2.9E+02 0.0064 22.9 6.4 48 276-323 33-85 (116)
83 COG1526 FdhD Uncharacterized p 24.6 94 0.002 29.8 3.9 43 277-319 212-254 (266)
84 PRK06552 keto-hydroxyglutarate 24.3 4.7E+02 0.01 24.2 8.4 55 277-333 79-134 (213)
85 PF13380 CoA_binding_2: CoA bi 24.0 1.9E+02 0.0041 23.7 5.2 38 277-314 70-108 (116)
86 cd03308 CmuA_CmuC_like CmuA_Cm 23.6 4.4E+02 0.0094 26.7 8.8 66 260-328 245-311 (378)
87 PF02634 FdhD-NarQ: FdhD/NarQ 23.5 86 0.0019 29.5 3.4 41 277-317 183-223 (236)
88 PF03060 NMO: Nitronate monoox 21.1 2.7E+02 0.0058 27.6 6.6 56 275-330 102-158 (330)
89 COG4359 Uncharacterized conser 21.0 1.8E+02 0.0038 26.4 4.5 43 274-316 77-123 (220)
90 PRK05718 keto-hydroxyglutarate 20.8 3.5E+02 0.0075 25.0 6.8 54 279-334 80-134 (212)
91 TIGR03867 MprA_tail MprA prote 20.7 83 0.0018 18.7 1.6 14 410-423 2-15 (27)
92 cd01138 FeuA Periplasmic bindi 20.2 2.5E+02 0.0054 26.1 6.0 51 279-330 59-113 (248)
93 cd01146 FhuD Fe3+-siderophore 20.2 2.9E+02 0.0063 25.8 6.5 51 280-330 59-115 (256)
No 1
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.1e-97 Score=777.43 Aligned_cols=462 Identities=72% Similarity=1.127 Sum_probs=443.1
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhh
Q 012157 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (470)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 85 (470)
.+++++.++.+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q 82 (525)
T TIGR02344 3 LVLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (525)
T ss_pred eeccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhh
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccc
Q 012157 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQ 165 (470)
Q Consensus 86 ~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~ 165 (470)
++++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++..+.+.|.++++|++++|+.++
T Consensus 83 ~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~ 162 (525)
T TIGR02344 83 DEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSR 162 (525)
T ss_pred hhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchh
Confidence 99999999999999999999999999999999999999999999999999999999987778889999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEeccc
Q 012157 166 FGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPL 245 (470)
Q Consensus 166 ~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~L 245 (470)
|.++|++++++|+..++++..++...+|++++|+|++++|++++||++++|++|++++.++ .||++++||+|++++++|
T Consensus 163 ~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~-~m~~~~~n~kIlll~~~L 241 (525)
T TIGR02344 163 WSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP-KMRRYIENPRIVLLDCPL 241 (525)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCC-CCccccCCCCEEEEeccc
Confidence 9999999999999999763212223677766799999999999999999999999999998 899999999999999999
Q ss_pred ccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHH
Q 012157 246 EYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAK 325 (470)
Q Consensus 246 e~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~ 325 (470)
++++++.+.++.+++++++..+++.|++++++++++|.+.|++||+++++|++.++++|.++||++++++++++|+|||+
T Consensus 242 e~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~ 321 (525)
T TIGR02344 242 EYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIAR 321 (525)
T ss_pred ccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012157 326 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (470)
Q Consensus 326 ~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~ 405 (470)
+|||++++++++++++++|+.|+.|+++++|+++|++|++|++++.+||+|||+|+.+++|+||+++||+++++++++++
T Consensus 322 ~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~ 401 (525)
T TIGR02344 322 ACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEP 401 (525)
T ss_pred HhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999996599999999999999999999989999999999999999999999999999999999999
Q ss_pred eEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 406 ~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++|||||++|++||.+|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 402 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~ 464 (525)
T TIGR02344 402 KLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRA 464 (525)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999999999998888999999999999999999999999999999999999986
No 2
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=6.3e-97 Score=775.71 Aligned_cols=460 Identities=40% Similarity=0.691 Sum_probs=442.2
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhh
Q 012157 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (470)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 85 (470)
.+++++.+..+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (519)
T TIGR02339 3 FILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82 (519)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45688888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccc-c
Q 012157 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT-S 164 (470)
Q Consensus 86 ~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~-~ 164 (470)
++++||||||+++|+++|++++.+++++|+||..|++||+.|++.++++|+++++|++..+.+.|.++++|+++||+. +
T Consensus 83 d~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~ 162 (519)
T TIGR02339 83 DAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAE 162 (519)
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999876788999999999999998 7
Q ss_pred chHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEecc
Q 012157 165 QFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP 244 (470)
Q Consensus 165 ~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~ 244 (470)
.+.++|++++++|+.+++...++|...+|++ +|+|++++|+++++|++++|++|++++.++ .||+.++||||++++++
T Consensus 163 ~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~-~m~~~i~n~kIlll~~~ 240 (519)
T TIGR02339 163 VTKDKLANLVVEAVKQVAEKRGDGKYYVDLD-NIKIEKKTGGSIDDTELVEGIVVDKEPVHP-GMPKRVKNAKIALLDAP 240 (519)
T ss_pred hhHHHHHHHHHHHHHHHhhhccCCCcccCHH-HeEEEEccCcChhcceeEeeEEEecCCCCC-CCccccCCCcEEEEecc
Confidence 8999999999999999974222444457776 699999999999999999999999999998 89999999999999999
Q ss_pred cccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHH
Q 012157 245 LEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIA 324 (470)
Q Consensus 245 Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia 324 (470)
||+++++.+.++.+++.+++.++.++|++++++++++|++.|++||+++++|++.++++|.++||++++++++++|+|||
T Consensus 241 Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa 320 (519)
T TIGR02339 241 LEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLA 320 (519)
T ss_pred ccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 012157 325 KACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKN 404 (470)
Q Consensus 325 ~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~ 404 (470)
++|||++++++++++++++|+ |+.|+++++|+++|++|++|..+..+||+|||||+.+++|.+|+++||++++++++++
T Consensus 321 ~~tGa~ii~~~~~l~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~ 399 (519)
T TIGR02339 321 RATGAKIVSSIKEITESDLGY-AGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALED 399 (519)
T ss_pred HHhCCEEeCchhhCChhhccC-CceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999 9999999999999999999988999999999999999999999999999999999999
Q ss_pred CeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 405 PKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 405 ~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
|++|||||++|++|+++|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 400 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~ 463 (519)
T TIGR02339 400 GKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRA 463 (519)
T ss_pred CCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999999999998888999999999999999999999999999999999999984
No 3
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-98 Score=704.68 Aligned_cols=460 Identities=35% Similarity=0.610 Sum_probs=443.6
Q ss_pred CCCCccccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHH
Q 012157 1 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (470)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~ 80 (470)
|+.|+.+++++++.++|.-.+.+|+.||..+++.++|||||+|+||+|+++.|+++|||||+||||.|++-||+++.+++
T Consensus 2 m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVd 81 (543)
T KOG0361|consen 2 MQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVD 81 (543)
T ss_pred CCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCC----HHHHHHHHHH
Q 012157 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND----RATMLGLVKS 156 (470)
Q Consensus 81 ~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~----~~~l~~v~~t 156 (470)
.+++||.++||||||||+|++++|+++..+++.|+||..|+++|++|...|++.++++++.++..+ ++.|++.+.|
T Consensus 82 ia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T 161 (543)
T KOG0361|consen 82 IARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAAT 161 (543)
T ss_pred HHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887433 5678899999
Q ss_pred HhhcccccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCC--CCCcceec
Q 012157 157 CIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAP--GKMRRKIV 234 (470)
Q Consensus 157 ~l~sk~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~--~~~~~~~~ 234 (470)
+|+||+..++.++|++++++|+..+.. ..++ ++|-|+|++||+++||.+++|+.|++.|.+. ++.|+++.
T Consensus 162 ~lsSKlI~~ek~fF~~MvVDAV~~ld~-------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~ 233 (543)
T KOG0361|consen 162 ALSSKLIRQEKEFFAKMVVDAVLTLDN-------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFL 233 (543)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHhhcc-------ccch-hhcceeecCCCccchhhhccceeeeehccccchhhCccccC
Confidence 999999999999999999999998852 1222 3699999999999999999999999999885 37899999
Q ss_pred CCeEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeec
Q 012157 235 NPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRR 314 (470)
Q Consensus 235 ~~kIll~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~ 314 (470)
||||+++|-.||.+..+.++++.+.++++++.++..||.++.+.+++++..|+|||++.-.|.+.+.|||.+++|.|.++
T Consensus 234 NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGR 313 (543)
T KOG0361|consen 234 NPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGR 313 (543)
T ss_pred CceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHH
Q 012157 315 LRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDA 394 (470)
Q Consensus 315 v~~~~L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~da 394 (470)
++.++|.|+..++|++++++..++.+..||. |..|+++++|.++|.+|++|+..+.||++|||+.++.++|.+|++|||
T Consensus 314 V~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~-C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDA 392 (543)
T KOG0361|consen 314 VPEEDLNRVMQACGGSIQTTVSDIKEEVLGT-CALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDA 392 (543)
T ss_pred CCHHHHHHHHHhcCcchhhhhhhcchhhcch-hhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 012157 395 MSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469 (470)
Q Consensus 395 l~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~ 469 (470)
++++|.++++..+|+|||++||++|++|++++..+.+++|+.+.+|++|||.||++||+|+|+|.++++++||.+
T Consensus 393 ImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~r 467 (543)
T KOG0361|consen 393 IMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQR 467 (543)
T ss_pred HHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999964
No 4
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.9e-95 Score=765.34 Aligned_cols=458 Identities=42% Similarity=0.712 Sum_probs=440.6
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhc
Q 012157 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQD 86 (470)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~ 86 (470)
+++++.+..+|.+++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 82 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 82 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccch
Q 012157 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF 166 (470)
Q Consensus 87 ~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~ 166 (470)
+++||||||+++|+++|++++.+++++|+||..|++||+.|++.+++.|++++.|++..+.+.+.++++|++++|+.+.+
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~ 162 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAA 162 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999766788999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEecccc
Q 012157 167 GDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246 (470)
Q Consensus 167 ~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le 246 (470)
.+++++++++|+.+++.+. .+...+|++ +|+|++++|+++++|++++|++|++++.++ .||+.++||||++++++||
T Consensus 163 ~~~l~~l~~~A~~~v~~~~-~~~~~~~~~-~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~-~m~~~~~n~~Illl~~~Le 239 (517)
T cd03343 163 KDKLADLVVDAVLQVAEKR-DGKYVVDLD-NIKIEKKTGGSVDDTELIRGIVIDKEVVHP-GMPKRVENAKIALLDAPLE 239 (517)
T ss_pred HHHHHHHHHHHHHHhhhcc-CCCccccHH-HeeEEeecCcCHHHcceeeeEEEeccCCCC-CCccccCCCcEEEEecccc
Confidence 9999999999999997521 122357775 699999999999999999999999999998 8999999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHH
Q 012157 247 YKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKA 326 (470)
Q Consensus 247 ~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~ 326 (470)
+++++.++++.+++.+++..+.+.|++++++++++|++.|+|||+++++|++.++++|.++||++++++++++|+|||++
T Consensus 240 ~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~ 319 (517)
T cd03343 240 VKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARA 319 (517)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 012157 327 CGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK 406 (470)
Q Consensus 327 tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~ 406 (470)
|||++++++++++++++|+ |+.|+++++|+++|++|++|..++.+||+|||||+.+++|++|+++||++++++++++|+
T Consensus 320 tGa~ii~~~~~l~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~ 398 (517)
T cd03343 320 TGAKIVTNIDDLTPEDLGE-AELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGK 398 (517)
T ss_pred hCCEEecchhhCChhhCCc-cceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999 999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 407 LVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 407 vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 399 vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~ 460 (517)
T cd03343 399 VVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRA 460 (517)
T ss_pred eeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999984
No 5
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.8e-95 Score=763.73 Aligned_cols=461 Identities=35% Similarity=0.612 Sum_probs=438.0
Q ss_pred CCCccccccc--cccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHH
Q 012157 2 HSPVLVLKDS--LKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMI 79 (470)
Q Consensus 2 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~ 79 (470)
+.|+.+++++ .+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~ 83 (526)
T cd03339 4 GRPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLV 83 (526)
T ss_pred CCCeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHH
Confidence 4565667876 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCC--CCHHHHHHHHHHH
Q 012157 80 ELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDT--NDRATMLGLVKSC 157 (470)
Q Consensus 80 ~~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~--~~~~~l~~v~~t~ 157 (470)
+++++|++++||||||+++|+++|++++.+++++|+||..|++||+.|++.++++|+++++|++. .+.+.|.++++|+
T Consensus 84 ~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~ts 163 (526)
T cd03339 84 ELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTS 163 (526)
T ss_pred HHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998853 3678899999999
Q ss_pred hhcccccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCe
Q 012157 158 IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPR 237 (470)
Q Consensus 158 l~sk~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~k 237 (470)
+++|+.+.+.+.|++++++|+..+... ....+|++ +|+|++++|++++||++++|++|++++.++ .||+.++|||
T Consensus 164 l~sk~~~~~~~~~s~i~v~av~~i~~~---~~~~~d~~-~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~-~m~~~~~n~k 238 (526)
T cd03339 164 LGSKIVSRCHRQFAEIAVDAVLSVADL---ERKDVNFE-LIKVEGKVGGRLEDTKLVKGIVIDKDFSHP-QMPKEVKDAK 238 (526)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHhhc---CCCccchH-HeEEEEecCcCHHHcceeeeEEEecccCCC-CCCceecCCC
Confidence 999999899999999999999988531 11245554 699999999999999999999999999998 8999999999
Q ss_pred EEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCH
Q 012157 238 IILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRK 317 (470)
Q Consensus 238 Ill~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~ 317 (470)
|++++++||+++++.+.++.++++++++.+.++|+++++++++++++.|+|+|+++++|++.++++|.++||++++++++
T Consensus 239 I~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~ 318 (526)
T cd03339 239 IAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGG 318 (526)
T ss_pred EEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECC--eEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHH
Q 012157 318 TDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAM 395 (470)
Q Consensus 318 ~~L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~--~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal 395 (470)
++|+|||++|||+++++++++++..+|+ |+.|++..+|+ ++|++|++|++++.+||+|||+|+.+++|.||+++||+
T Consensus 319 ~~LerIa~~tGa~ii~~l~~l~~~~LG~-~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl 397 (526)
T cd03339 319 VEIELIAIATGGRIVPRFEDLSPEKLGK-AGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDAL 397 (526)
T ss_pred HHHHHHHHHhCCEEecchhhCChhhccc-CceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999985 68999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 396 SVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 396 ~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+++++++++|++|||||++|++++.+|+++++..++.+++++++|++||+.||++|++|||+|+.+++++|+.
T Consensus 398 ~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~ 470 (526)
T cd03339 398 CVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKA 470 (526)
T ss_pred HHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999998888899999999999999999999999999999999999973
No 6
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-95 Score=762.72 Aligned_cols=460 Identities=37% Similarity=0.611 Sum_probs=437.7
Q ss_pred CCcccccc--ccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHH
Q 012157 3 SPVLVLKD--SLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (470)
Q Consensus 3 ~~~~~~~~--~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~ 80 (470)
.|+.++++ +.++.+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~ 88 (532)
T TIGR02343 9 RPFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVE 88 (532)
T ss_pred CCchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHH
Confidence 35556677 4678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCC--CCCHHHHHHHHHHHh
Q 012157 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPID--TNDRATMLGLVKSCI 158 (470)
Q Consensus 81 ~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~--~~~~~~l~~v~~t~l 158 (470)
++++|++++||||||+++|+++|++++.+++++|+||..|++||+.|++.++++|+++++|++ ..+.+.|.++++|++
T Consensus 89 ~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l 168 (532)
T TIGR02343 89 LSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSL 168 (532)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999874 346788999999999
Q ss_pred hcccccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeE
Q 012157 159 GTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRI 238 (470)
Q Consensus 159 ~sk~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kI 238 (470)
++|+.+.+.+.|++++++|+..+... ....+|++ +|+|++++|++++||++++|++|++++.++ .||+.++||||
T Consensus 169 ~sK~~~~~~~~ls~i~~~av~~i~~~---~~~~~d~~-~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~-~m~~~~~n~kI 243 (532)
T TIGR02343 169 GSKIVSKCHRRFAEIAVDAVLMVADM---ERRDVDFD-LIKVEGKVGGSLEDTKLIKGIIIDKDFSHP-QMPKEVKDAKI 243 (532)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhhc---CCCcCCHH-HeeEEEecCCCcccceeEeeEEEecCcCCC-CCCeeecCCcE
Confidence 99998899999999999999988531 11356765 699999999999999999999999999998 89999999999
Q ss_pred EEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHh
Q 012157 239 ILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 318 (470)
Q Consensus 239 ll~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~ 318 (470)
++++++||+++++.+.++.+++++++..+.+.|++++++++++|++.|+++|+++++|++.++++|.++||+++++++++
T Consensus 244 ~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~ 323 (532)
T TIGR02343 244 AILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGH 323 (532)
T ss_pred EEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHH
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECC--eEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Q 012157 319 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMS 396 (470)
Q Consensus 319 ~L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~--~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~ 396 (470)
+|+|||++|||+++++++++++.++|+ |+.++++.+|+ ++|++|++|++++.+||+|||+|+.+++|.||+++||++
T Consensus 324 ~l~~Ia~~tGa~~i~~l~~~~~~~LG~-a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~ 402 (532)
T TIGR02343 324 ELELIAIATGGRIVPRFEELSEDKLGK-AGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALC 402 (532)
T ss_pred HHHHHHHHhCCEEecccccCCHhHCcc-cceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999987 489999999989999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 397 VARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 397 ~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+++++++++++|||||++|++|+++|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 403 ~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~ 474 (532)
T TIGR02343 403 VVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKS 474 (532)
T ss_pred HHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999999999999999999998888999999999999999999999999999999999999984
No 7
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.3e-95 Score=758.14 Aligned_cols=457 Identities=30% Similarity=0.560 Sum_probs=437.0
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhh
Q 012157 5 VLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRT 84 (470)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~ 84 (470)
+.+++++.++.+|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~ 81 (531)
T TIGR02347 2 VKLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATA 81 (531)
T ss_pred cccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCC-CCCHHHHHHHHHHHhhcccc
Q 012157 85 QDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPID-TNDRATMLGLVKSCIGTKFT 163 (470)
Q Consensus 85 ~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~-~~~~~~l~~v~~t~l~sk~~ 163 (470)
|++++||||||+++|+++|++++.+++++|+||..|++||+.|++.++++|+++++++. ..+.+.|.++++|++++|+.
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~ 161 (531)
T TIGR02347 82 QDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLP 161 (531)
T ss_pred hhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999998763 56788999999999999999
Q ss_pred cchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEec
Q 012157 164 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243 (470)
Q Consensus 164 ~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~ 243 (470)
+.+.++|++++++|+..++. ++. .+|++ +|++++.+|++.++|++++|++|++++.++ .||++++||+|+++++
T Consensus 162 ~~~~~~ls~iv~~Av~~v~~---~~~-~i~~~-~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~-~~~~~~~n~~Ill~~~ 235 (531)
T TIGR02347 162 IDLADQLTEIVVDAVLAIKK---DGE-QIDLF-MVEIMEMKHKSATDTTLIRGLVLDHGARHP-DMPRRVKNAYILTCNV 235 (531)
T ss_pred hhhHHHHHHHHHHHHHHHhh---cCC-CCChh-HeEEEEecCCCccccEEEeeEEEecCcCCC-CCceeccCceEEEEeC
Confidence 99999999999999999975 222 46665 599999999999999999999999999998 8999999999999999
Q ss_pred ccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEecCCCCHHHHHHHHHcCCeeee
Q 012157 244 PLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFK-------PD---LVITEKGLSDLACHYLSKAGVSAIR 313 (470)
Q Consensus 244 ~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~-------~~---lIi~~~~i~~~~l~~l~~~~I~vv~ 313 (470)
+|++++++....+.+++++++..+...|++++++++++|.+.+ ++ +|+++++|++.+++||.++||++++
T Consensus 236 ~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~ 315 (531)
T TIGR02347 236 SLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALR 315 (531)
T ss_pred CCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEc
Confidence 9999999999999999999999999999999999999999876 25 9999999999999999999999999
Q ss_pred cCCHhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHH
Q 012157 314 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQD 393 (470)
Q Consensus 314 ~v~~~~L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~d 393 (470)
++++++|+|||++|||++++++++++++++|+ |+.|+++.+|+++|++|++|++++.+||+|||+|+.+++|++|+++|
T Consensus 316 rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~-~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~D 394 (531)
T TIGR02347 316 RAKRRNMERLTLACGGEALNSVEDLTPECLGW-AGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRD 394 (531)
T ss_pred cCCHHHHHHHHHHhCCEEecccccCCcccccc-ceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 394 AMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 394 al~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
|++++++++++|++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 395 Al~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~ 469 (531)
T TIGR02347 395 GLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLED 469 (531)
T ss_pred HHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999998888999999999999999999999999999999999999975
No 8
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-94 Score=759.64 Aligned_cols=452 Identities=32% Similarity=0.516 Sum_probs=430.9
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhcccccCCh
Q 012157 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGT 93 (470)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (470)
+.+|.+++..|++||.++++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCCCCHHHHHHHHHHHhhcccccchHHHHHH
Q 012157 94 TSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDK-IAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIAD 172 (470)
Q Consensus 94 tt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~-~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~ 172 (470)
||+++|+++||+++.+++++|+||..|++||+.|++.++++|++ +++|++..+++.|.++++|+++||+.+.+.++|++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999996 89999766788999999999999998888999999
Q ss_pred HHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEecccccccccc
Q 012157 173 LAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252 (470)
Q Consensus 173 l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le~~~~~~ 252 (470)
++++|+..++....++...+|++ +|+|++++|+++++|++++|++|++++.++ +||+.++||+|++++++|++++++.
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~-~I~i~~~~Ggs~~~s~li~Givi~~~~~~~-~m~~~i~n~kIlll~~~Le~~~~~~ 240 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIK-AVNILKAHGKSAKESYLVNGYALNCTRASQ-GMPTRVKNAKIACLDFNLQKTKMKL 240 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHH-HeEEEEecCcChhhcceeeeEEEecccCCC-CCcccccCCcEEEEeccCCCCcccc
Confidence 99999999853112333346776 599999999999999999999999999998 8999999999999999999999999
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHHhCCeec
Q 012157 253 QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIV 332 (470)
Q Consensus 253 ~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tGa~i~ 332 (470)
..++.++++++++.+.+.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||+++
T Consensus 241 ~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii 320 (527)
T cd03335 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLV 320 (527)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC------CCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 012157 333 NRPDEL------QESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK 406 (470)
Q Consensus 333 s~~~~l------~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~ 406 (470)
++++++ ++.++|+ |+.++++++++++|++|++|++++.+||+|||+|+.+++|++|+++||++++++++++|+
T Consensus 321 ~~~~~l~~~~~~~~~~LG~-~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~ 399 (527)
T cd03335 321 STLANLEGEETFDPSYLGE-AEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNS 399 (527)
T ss_pred cChhhcCcccccCHhhCcc-CceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 988655 3447999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 407 LVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 407 vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+|||||++|++|+.+|+++++..++++++++++||+||+.||++|++|||+|+.+++++|++
T Consensus 400 vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~ 461 (527)
T cd03335 400 VVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRA 461 (527)
T ss_pred EeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999986
No 9
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-94 Score=756.26 Aligned_cols=454 Identities=35% Similarity=0.626 Sum_probs=435.2
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhh
Q 012157 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (470)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 85 (470)
.+++++.+..+|.+++.+|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 82 (522)
T cd03340 3 ILLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQ 82 (522)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHh
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCC----CHHHHHHHHHHHhhcc
Q 012157 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTN----DRATMLGLVKSCIGTK 161 (470)
Q Consensus 86 ~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~----~~~~l~~v~~t~l~sk 161 (470)
++++||||||+|+|+++|++++.+++++|+||..|++||+.|++.++++|+++++|++.. +.+.+.++++|+++||
T Consensus 83 ~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK 162 (522)
T cd03340 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSK 162 (522)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999998653 3677999999999999
Q ss_pred cccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCC--CCcceecCCeEE
Q 012157 162 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRII 239 (470)
Q Consensus 162 ~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~--~~~~~~~~~kIl 239 (470)
+.+.+.++|++++++|+..++. .+|.+ +|+|++++|++++||++++|++|++++.++. .||+.++||+|+
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~-------~~~~~-~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIl 234 (522)
T cd03340 163 LIASEKEFFAKMVVDAVLSLDD-------DLDLD-MIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKIL 234 (522)
T ss_pred cchhHHHHHHHHHHHHHHHhcc-------cCChh-HheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEE
Confidence 9999999999999999999964 13443 6999999999999999999999999999762 469999999999
Q ss_pred EEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhH
Q 012157 240 LLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (470)
Q Consensus 240 l~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~ 319 (470)
+++++||+++++.+.++.++++++++++.+.|++++.++++.+.+.|+++|+++++|++.+++||.++||++++++++++
T Consensus 235 l~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~ 314 (522)
T cd03340 235 LLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEED 314 (522)
T ss_pred EEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Q 012157 320 NNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVAR 399 (470)
Q Consensus 320 L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~ 399 (470)
|+|||++|||++++++++++++++|+ |+.|++.++|+++|++|++|+.++.+||+|||+++..++|.||+++||+++++
T Consensus 315 l~rIa~~tGa~ii~~l~~l~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~ 393 (522)
T cd03340 315 LKRVAQATGGSIQTTVSNITDDVLGT-CGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVR 393 (522)
T ss_pred HHHHHHHHCCEEeeccccCCcccccc-ceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 400 NIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 400 ~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+++++|++|||||++|++++.+|+++++..++++++++++||+||+.||++|++|||+|+.+++++|++
T Consensus 394 ~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~ 462 (522)
T cd03340 394 RAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQ 462 (522)
T ss_pred HHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999998888999999999999999999999999999999999999986
No 10
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.4e-94 Score=753.18 Aligned_cols=454 Identities=32% Similarity=0.516 Sum_probs=434.2
Q ss_pred CccccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecC-----CCCEEEecChHHHHhhccccChhHHHH
Q 012157 4 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDA-----SGGIVVTNDGNAILRELDVAHPAAKSM 78 (470)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~-----~g~~~iTndg~tIl~~l~~~hP~a~ll 78 (470)
|..++++++++.+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll 86 (533)
T PTZ00212 7 PPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKIL 86 (533)
T ss_pred chHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHH
Confidence 455778888999999999999999999999999999999999999998 599999999999999999999999999
Q ss_pred HHHHhhhcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCC---HHHHHHHHH
Q 012157 79 IELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND---RATMLGLVK 155 (470)
Q Consensus 79 ~~~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~---~~~l~~v~~ 155 (470)
++++++|++++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++..+ .++|.++++
T Consensus 87 ~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~ 166 (533)
T PTZ00212 87 VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIAR 166 (533)
T ss_pred HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986533 678999999
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecC
Q 012157 156 SCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVN 235 (470)
Q Consensus 156 t~l~sk~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~ 235 (470)
|++++|+.+.+.+.|++++++|+..+.. .++++ +|++++++|+++++|++++|+++++++.+ .||++++|
T Consensus 167 t~l~sk~~~~~~~~l~~i~~~av~~i~~-------~~~~~-~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~--~~~~~i~n 236 (533)
T PTZ00212 167 TTLSSKLLTVEKDHFAKLAVDAVLRLKG-------SGNLD-YIQIIKKPGGTLRDSYLEDGFILEKKIGV--GQPKRLEN 236 (533)
T ss_pred HHhcccccchhHHHHHHHHHHHHHHHhc-------cCCcc-ceEEEEecCcCccccEEEEeEEEecccCC--CCCccccC
Confidence 9999999999999999999999998852 13444 59999999999999999999999999876 58999999
Q ss_pred CeEEEEecccccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeec
Q 012157 236 PRIILLDSPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRR 314 (470)
Q Consensus 236 ~kIll~~~~Le~~~~~~-~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~ 314 (470)
|||++++++||+++++. ..++.+++++++..+.+.|+++++++++.|++.|++++++++.|++.++++|.++||+++++
T Consensus 237 ~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~ 316 (533)
T PTZ00212 237 CKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEH 316 (533)
T ss_pred CcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEec
Confidence 99999999999999987 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHH
Q 012157 315 LRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDA 394 (470)
Q Consensus 315 v~~~~L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~da 394 (470)
+++++++|||++|||+++++++++++.++|+ |+.|++..+|+++|++|++|..++.+||+|||+|+.+++|.||+++||
T Consensus 317 v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DA 395 (533)
T PTZ00212 317 ADFDGMERLAAALGAEIVSTFDTPEKVKLGH-CDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDA 395 (533)
T ss_pred CCHHHHHHHHHHhCCEEeecCCCCCHHHccC-CceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 395 MSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 395 l~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++++++++++|++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 396 l~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~ 469 (533)
T PTZ00212 396 LCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRA 469 (533)
T ss_pred HHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999984
No 11
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-93 Score=749.13 Aligned_cols=450 Identities=30% Similarity=0.476 Sum_probs=430.0
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecC--CCCEEEecChHHHHhhccccChhHHHHHHHHhhh
Q 012157 8 LKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDA--SGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (470)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~--~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 85 (470)
++++.+..+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCC---CHHHHHHHHHHHhhccc
Q 012157 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTN---DRATMLGLVKSCIGTKF 162 (470)
Q Consensus 86 ~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~---~~~~l~~v~~t~l~sk~ 162 (470)
++++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++.. +.++|.++++|++++|+
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~ 161 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI 161 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999998532 35789999999999999
Q ss_pred ccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEe
Q 012157 163 TSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLD 242 (470)
Q Consensus 163 ~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~ 242 (470)
.+.++++|++++++|+..++. .+|.+ +|++++++|+++++|++++|+++++++.+ .||++++||||++++
T Consensus 162 ~~~~~~~l~~l~~~A~~~v~~-------~~~~~-~i~i~ki~G~s~~ds~l~~G~v~~~~~~~--~~~~~~~n~kIli~~ 231 (517)
T cd03336 162 LTQDKEHFAELAVDAVLRLKG-------SGNLD-AIQIIKKLGGSLKDSYLDEGFLLDKKIGV--NQPKRIENAKILIAN 231 (517)
T ss_pred cchhHHHHHHHHHHHHHHhhc-------cCCcc-ceeEEEccCCCccceEEEeeEEEecccCC--CCCCeeccccEEEEe
Confidence 999999999999999999852 23443 59999999999999999999999999876 479999999999999
Q ss_pred cccccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHH
Q 012157 243 SPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNN 321 (470)
Q Consensus 243 ~~Le~~~~~~-~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~ 321 (470)
++|++++++. +.++.+++++++..+.+.|+++++++++.|++.|++++++++.|++.+++||.++||++++++++++|+
T Consensus 232 ~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~ 311 (517)
T cd03336 232 TPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVE 311 (517)
T ss_pred cCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHH
Confidence 9999999987 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHH
Q 012157 322 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 401 (470)
Q Consensus 322 ~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~ 401 (470)
|||++|||+++++++++++.++|+ |+.|++..+|+++|++|++|+.++.+||+|||+|+.+++|.||+++||+++++++
T Consensus 312 rIa~~tGa~ii~~l~~~~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~ 390 (517)
T cd03336 312 RLALVTGGEIASTFDHPELVKLGT-CKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQT 390 (517)
T ss_pred HHHHHhCCEEecccCCCCcccccc-cceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999998999999999999999999999999999999999
Q ss_pred hcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 402 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 402 ~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+++|++|||||++|++|++.|++++++.++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 391 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~ 457 (517)
T cd03336 391 VKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRA 457 (517)
T ss_pred HhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999998888999999999999999999999999999999999999985
No 12
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-93 Score=746.95 Aligned_cols=451 Identities=34% Similarity=0.569 Sum_probs=431.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhcccccCCh
Q 012157 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGT 93 (470)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (470)
..++.+++.+|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||
T Consensus 4 ~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 4 KDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHHHHHHH
Q 012157 94 TSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADL 173 (470)
Q Consensus 94 tt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~l 173 (470)
||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++..+.+.|.++++|++++|+.+.+.++|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998778899999999999999999999999999
Q ss_pred HHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEeccccccccccc
Q 012157 174 AIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQ 253 (470)
Q Consensus 174 ~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le~~~~~~~ 253 (470)
+++|+..++.+..+ ..+|++ +|+|++++|+++++|++++|++|++++.++.+||+.++||||++++++|++++++..
T Consensus 164 ~~~a~~~v~~~~~~--~~~~~~-~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~ 240 (517)
T TIGR02342 164 AVDAVLKVIDPEND--KNVDLN-DIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDME 240 (517)
T ss_pred HHHHHHHHhccccC--CccCHH-HeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCccccc
Confidence 99999999742212 256765 699999999999999999999999999983379999999999999999999999999
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCC-----CHHHHHHHHHcCCeeeecCCHhHHHHHHHHhC
Q 012157 254 TNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKACG 328 (470)
Q Consensus 254 ~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i-----~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tG 328 (470)
.++.++++++++.+.++|+++++++++++++.|++||+|+++| ++.++++|.++||++++++++++|+|||++||
T Consensus 241 ~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tG 320 (517)
T TIGR02342 241 NQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIG 320 (517)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCC-CCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeE
Q 012157 329 AVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKL 407 (470)
Q Consensus 329 a~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~-~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~v 407 (470)
|+++++++++++.++|+ |+.|+++++|+++|+++++++. ++.+||+|||+|+.+++|.+|+++||+++++++++++++
T Consensus 321 a~ii~~~~~l~~~~LG~-~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~ 399 (517)
T TIGR02342 321 CKPIASIDHFTADKLGS-AELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGL 399 (517)
T ss_pred CEEEcchhhcCcccCcC-CceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999 9999999999999999999987 489999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 408 VPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 408 v~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
|||||++|+++|.+|++++++.++.+++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 400 VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~ 460 (517)
T TIGR02342 400 IPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRN 460 (517)
T ss_pred EECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999998888899999999999999999999999999999999999986
No 13
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-93 Score=747.89 Aligned_cols=457 Identities=35% Similarity=0.632 Sum_probs=436.7
Q ss_pred CCccccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHH
Q 012157 3 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELS 82 (470)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~ 82 (470)
+|+.+++++.++.+|.+++..|+.||.+++++|++||||+||+|||+++.| ++|||||+||+++|+++||+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a 80 (522)
T TIGR02345 2 PTIVLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIA 80 (522)
T ss_pred CccchhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHH
Confidence 455678888899999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hhhcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCC---CCHHHHHHHHHHHhh
Q 012157 83 RTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDT---NDRATMLGLVKSCIG 159 (470)
Q Consensus 83 ~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~---~~~~~l~~v~~t~l~ 159 (470)
++|++++||||||+|+|+++|++++.+++++|+||..|++||+.|++.++++|+++++|++. .+.+++.++++|+++
T Consensus 81 ~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~ 160 (522)
T TIGR02345 81 KSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALN 160 (522)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999863 245789999999999
Q ss_pred cccccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCC--CCcceecCCe
Q 012157 160 TKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPR 237 (470)
Q Consensus 160 sk~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~--~~~~~~~~~k 237 (470)
||+.+.++++|++++++|+..++.+ .+|++ +|+|++++|++++||++++|++|++++.++. .||+.++||+
T Consensus 161 sK~~~~~~~~l~~l~~~A~~~v~~~------~~~~~-~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~k 233 (522)
T TIGR02345 161 SKLIAHEKEFFSKMIVDAVLQLDID------DLDLK-LIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPK 233 (522)
T ss_pred cccccchHHHHHHHHHHHHHHHhhc------cCChh-HheEEeecCCCHHhcceecceEEecccCccccccCCceeccce
Confidence 9999999999999999999999741 35554 6999999999999999999999999998762 4699999999
Q ss_pred EEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCH
Q 012157 238 IILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRK 317 (470)
Q Consensus 238 Ill~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~ 317 (470)
|++++++|++.+++.+..+.++++++++++.+.|+.+++++++.+.+.|+++|+++++|++.+++||.++||+++++++.
T Consensus 234 Ill~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~ 313 (522)
T TIGR02345 234 ILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSD 313 (522)
T ss_pred EEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Q 012157 318 TDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 397 (470)
Q Consensus 318 ~~L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~ 397 (470)
+++++++++|||++++++++++++++|+ |+.++++++++++|.+|++|++++.+||+|||+|+.+++|.+|+++||+++
T Consensus 314 ~dl~ria~~tga~ii~~~~~l~~~~LG~-~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~ 392 (522)
T TIGR02345 314 EDLKRVVKACGGSIQSTTSDLEADVLGT-CALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMI 392 (522)
T ss_pred HHHHHHHHHhCCeEEcchhhCChhhccC-CceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999998899999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 398 ARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 398 ~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++++++++++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 393 ~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~ 463 (522)
T TIGR02345 393 VRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRS 463 (522)
T ss_pred HHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999998899999999999999999998888999999999999999999999999999999999999986
No 14
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.8e-93 Score=747.78 Aligned_cols=453 Identities=32% Similarity=0.513 Sum_probs=431.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhcccccCC
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDG 92 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (470)
++.+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCCCCHHHHHHHHHHHhhcccccchHHHHH
Q 012157 93 TTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDK-IAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIA 171 (470)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~-~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~ 171 (470)
|||+++|+++|++++.+++++|+||..|++||+.|++.+++.|++ +++|++..+.+.+.++++|+++||+.+.++++|+
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls 165 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFS 165 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHH
Confidence 999999999999999999999999999999999999999999987 4899986678899999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEeccccccccc
Q 012157 172 DLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 251 (470)
Q Consensus 172 ~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le~~~~~ 251 (470)
+++++|+..++....+|...+|++ +|++++++|+++++|++++|++|++++.++ +||++++||+|++++++|++.+++
T Consensus 166 ~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~-~m~~~~~n~kIli~~~~L~~~~~~ 243 (536)
T TIGR02340 166 NIVVDAVLAVKMTNENGETKYPIK-AVNILKAHGGSARESYLVKGYALNCTRASQ-QMPKRIKKAKIACLDFNLQKQKMA 243 (536)
T ss_pred HHHHHHHHHHhcccccCccccchH-HeEEEEecCCCccccEEEEEEEEecccCCC-CCcceecCCcEEEEecCCCCCccc
Confidence 999999999963222344456775 699999999999999999999999999998 899999999999999999999999
Q ss_pred ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHHhCCee
Q 012157 252 NQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVI 331 (470)
Q Consensus 252 ~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tGa~i 331 (470)
...++.++++.+++.+.+.|++++++.+++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||++
T Consensus 244 ~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~i 323 (536)
T TIGR02340 244 LGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTL 323 (536)
T ss_pred CceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC------CCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012157 332 VNRPDEL------QESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (470)
Q Consensus 332 ~s~~~~l------~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~ 405 (470)
+++++++ ++.++|+ |+.|+++++++++|++|++++.++++||+|||+|+.+++|++|+++||++++++++++|
T Consensus 324 i~~~~~l~~~~~~~~~~LG~-~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 402 (536)
T TIGR02340 324 VSTLADLEGEETFDASYLGF-ADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTLESN 402 (536)
T ss_pred ecchhhcCcccccccccccc-CceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9988654 3456999 99999999999999999999988999999999999999999999999999999999999
Q ss_pred eEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 406 ~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 403 ~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~ 465 (536)
T TIGR02340 403 SVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRA 465 (536)
T ss_pred CEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999999999988888899999999999999999999999999999999999976
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-92 Score=743.60 Aligned_cols=451 Identities=37% Similarity=0.592 Sum_probs=431.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhcccccCC
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDG 92 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (470)
++.++.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHHHHHH
Q 012157 93 TTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIAD 172 (470)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~ 172 (470)
|||+++|+++|++++.+++++|+||..|++||+.|++.++++|+++++|++..|.+.|.++++|++++|+.+.+++++++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~ 161 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAP 161 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999866788999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCc-cccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEeccccccccc
Q 012157 173 LAIDATTTVGVDLGQGL-REVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 251 (470)
Q Consensus 173 l~~~a~~~~~~~~~~g~-~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le~~~~~ 251 (470)
++++|+.+++.+ +. ..+|++ +|+|.+++|+++++|++++|++|++++.++..||+.++||++++++|+|++++++
T Consensus 162 li~~A~~~v~~~---~~~~~~d~~-~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~ 237 (515)
T cd03338 162 IAVDAVLKVIDP---ATATNVDLK-DIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTD 237 (515)
T ss_pred HHHHHHHHhhcc---cccCcCCHH-HeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccc
Confidence 999999999852 22 357775 6999999999999999999999999999972249999999999999999999999
Q ss_pred ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCC-----CHHHHHHHHHcCCeeeecCCHhHHHHHHHH
Q 012157 252 NQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKA 326 (470)
Q Consensus 252 ~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i-----~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~ 326 (470)
...++.++++++++.+.++|+++++++++++++.|++||+++++| ++.++++|.++||++++++++++|+|||++
T Consensus 238 ~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~ 317 (515)
T cd03338 238 MDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKT 317 (515)
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred hCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCC-CCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012157 327 CGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (470)
Q Consensus 327 tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~-~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~ 405 (470)
|||+++++++++++.++|+ |+.|+++++|+++|++|++|++ ++.+||+|||+|+.+++|.||+++||++++++++++|
T Consensus 318 tGa~ii~sl~~l~~~~LG~-~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~ 396 (515)
T cd03338 318 IGCKPVASIDHFTEDKLGS-ADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKR 396 (515)
T ss_pred HCCEEecccccCCHhhCCC-CceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999 9999999999999999999987 6999999999999999999999999999999999999
Q ss_pred eEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 406 ~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++|||||++|++|+.+|+++++..++.+++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 397 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~ 459 (515)
T cd03338 397 ALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRN 459 (515)
T ss_pred CEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999999999998888899999999999999999999999999999999999976
No 16
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.8e-92 Score=737.94 Aligned_cols=453 Identities=32% Similarity=0.545 Sum_probs=429.1
Q ss_pred ccccccccccch-hHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhh
Q 012157 7 VLKDSLKRESGT-KVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (470)
Q Consensus 7 ~~~~~~~~~~g~-~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 85 (470)
+++++..+.+|. +++..|+.||.+++++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sq 84 (531)
T TIGR02346 5 LLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQ 84 (531)
T ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHH
Confidence 456665677785 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccc-cC-CCCCHHHHHHHHHHHhhcccc
Q 012157 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAM-PI-DTNDRATMLGLVKSCIGTKFT 163 (470)
Q Consensus 86 ~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~-~v-~~~~~~~l~~v~~t~l~sk~~ 163 (470)
++++||||||+|+|+++|++++.+++++|+||..|++||+.|++.++++|+++++ ++ +..+.+.+.++++|+++||+.
T Consensus 85 d~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~ 164 (531)
T TIGR02346 85 ENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQY 164 (531)
T ss_pred hhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999999999999999986 77 445678899999999999998
Q ss_pred cchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEec
Q 012157 164 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243 (470)
Q Consensus 164 ~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~ 243 (470)
+. +++|++++++|+.+++. ++...+|++ .|+|++++|+++++|++++|++|++++. .||+.++||||+++++
T Consensus 165 ~~-~~~ls~l~~~Ai~~v~~---~~~~~~~~~-~I~i~ki~G~s~~ds~li~Gi~~~~~~~---~~~k~i~n~kI~l~~~ 236 (531)
T TIGR02346 165 GN-EDFLAQLVAKACSTVMP---KNPENFNVD-NIRVSKIMGGSISNSEVLKGMVFNREAE---GSVKRVKNAKVAVFSC 236 (531)
T ss_pred ch-HHHHHHHHHHHHHHHhh---cCCCcCChh-HeeEEEecCCChhhceeEeeeEEeccCC---CCceeccCCCEEEEec
Confidence 77 99999999999999975 232356775 5999999999999999999999999853 4789999999999999
Q ss_pred ccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHH
Q 012157 244 PLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRI 323 (470)
Q Consensus 244 ~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~i 323 (470)
++++++++.+.++.+++++++.++.+.|+++++++++++++.|++||+++++|++.++++|.++||+++++++..+|+||
T Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~I 316 (531)
T TIGR02346 237 PLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRL 316 (531)
T ss_pred CcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecC-CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHh
Q 012157 324 AKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCK-DPKACTVLLRGASKDLLNEVERNLQDAMSVARNII 402 (470)
Q Consensus 324 a~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~-~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~ 402 (470)
|.+|||++++++++++++++|+ |+.|++.++|+++|.+|+++. .++.+||+|||+|+.+++|++|+++||++++++++
T Consensus 317 a~~tGa~ii~~l~~~~~~~LG~-a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai 395 (531)
T TIGR02346 317 CKTVGATPLARLGAPQPEEIGY-VDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALV 395 (531)
T ss_pred HHHHCCEEecccccCCHhHccc-cceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 999999999999999999887 58999999999999999999999999999999999
Q ss_pred cCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 403 KNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 403 ~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++|++||||||+|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 396 ~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~ 461 (531)
T TIGR02346 396 KDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYA 461 (531)
T ss_pred cCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999998888899999999999999999999999999999999999975
No 17
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.2e-92 Score=734.76 Aligned_cols=451 Identities=30% Similarity=0.489 Sum_probs=429.8
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCC--CCEEEecChHHHHhhccccChhHHHHHHHHhh
Q 012157 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRT 84 (470)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~--g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~ 84 (470)
+++++.+..+|.+++..|+.|+.+++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|+++++++
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 4567778899999999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred hcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCC---CHHHHHHHHHHHhhcc
Q 012157 85 QDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTN---DRATMLGLVKSCIGTK 161 (470)
Q Consensus 85 ~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~---~~~~l~~v~~t~l~sk 161 (470)
|++++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++.. +.++|.++++|++++|
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~sk 161 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSK 161 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999998532 3678999999999999
Q ss_pred cccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEE
Q 012157 162 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILL 241 (470)
Q Consensus 162 ~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~ 241 (470)
+.+.+.+.|++++++|+..+.. + .|.+ +|++.+++|+++++|++++|+++++.+.+ .||+.++||+|+++
T Consensus 162 i~~~~~~~~s~l~~~av~~i~~----~---~~~~-~i~i~k~~G~s~~~s~l~~G~v~~~~~~~--~~~~~~~n~~Ili~ 231 (519)
T TIGR02341 162 ILSQHKDHFAQLAVDAVLRLKG----S---GNLD-AIQIIKKLGGSLNDSYLDEGFLLEKKIGV--NQPKRIENAKILIA 231 (519)
T ss_pred hhhhHHHHHHHHHHHHHHHhcc----C---CChh-heEEEEccCCCcccceEEeeEEEeccCCC--CCceeeccccEEEE
Confidence 9999999999999999998842 1 2333 59999999999999999999999999876 58999999999999
Q ss_pred ecccccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHH
Q 012157 242 DSPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDN 320 (470)
Q Consensus 242 ~~~Le~~~~~~-~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L 320 (470)
+++|++++++. ..++.+++++++..+.+.|+++++++++.|++.|++++++++.|++.++++|.+++|++++++++.+|
T Consensus 232 ~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l 311 (519)
T TIGR02341 232 NTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGI 311 (519)
T ss_pred ecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHH
Confidence 99999999886 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHH
Q 012157 321 NRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARN 400 (470)
Q Consensus 321 ~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~ 400 (470)
+|||++|||+++++++++++.++|+ |+.|++..+|+++|++|++|+.++.+||+|||+|+.+++|.||+++||++++++
T Consensus 312 ~~ia~~tGa~ii~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~ 390 (519)
T TIGR02341 312 ERLALVTGGEIVSTFDHPELVKLGS-CDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQ 390 (519)
T ss_pred HHHHHHhCCEEecccccCCcccccc-CceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 401 IIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 401 ~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+++++++|||||++|++|+..|++++++.++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 391 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~ 458 (519)
T TIGR02341 391 TVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRA 458 (519)
T ss_pred HHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999986
No 18
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4e-91 Score=723.94 Aligned_cols=420 Identities=73% Similarity=1.145 Sum_probs=400.1
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhh
Q 012157 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (470)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~ 85 (470)
.+++++.++.+|.+++..|+.||.++++++++||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (480)
T cd03337 3 LVLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (480)
T ss_pred eeccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhH
Confidence 35677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccc
Q 012157 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQ 165 (470)
Q Consensus 86 ~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~ 165 (470)
++++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++..|.+.|.++++|++++|+.+.
T Consensus 83 ~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~ 162 (480)
T cd03337 83 DEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSR 162 (480)
T ss_pred HHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999987788999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccccCCCc-cccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEecc
Q 012157 166 FGDLIADLAIDATTTVGVDLGQGL-REVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP 244 (470)
Q Consensus 166 ~~~~l~~l~~~a~~~~~~~~~~g~-~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~ 244 (470)
|.+.+++++++|+..++++.. +. ..+|++++|+|++++|++++||++++|++|++++.++ +||++++||||++++++
T Consensus 163 ~~~~ls~lv~~Ai~~v~~~~~-~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~-~m~~~~~n~kIlll~~~ 240 (480)
T cd03337 163 WSDLMCNLALDAVKTVAVEEN-GRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHP-KMRRRIENPRIVLLDCP 240 (480)
T ss_pred HHHHHHHHHHHHHHhhccccC-CCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCC-CCCcEecCCCEEEEecC
Confidence 999999999999999986321 22 2477766799999999999999999999999999998 89999999999999999
Q ss_pred cccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHH
Q 012157 245 LEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIA 324 (470)
Q Consensus 245 Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia 324 (470)
|++ ||+++++|++.++++|.++||++++++++++|+|||
T Consensus 241 Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa 279 (480)
T cd03337 241 LEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIA 279 (480)
T ss_pred cce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHH
Confidence 875 999999999999999999999999999999999999
Q ss_pred HHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 012157 325 KACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKN 404 (470)
Q Consensus 325 ~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~ 404 (470)
++|||++++++++++++++|+.|+.++++++++++|++|++|++++.+||+|||+|+.+++|.||+++||++++++++++
T Consensus 280 ~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~ 359 (480)
T cd03337 280 RACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILN 359 (480)
T ss_pred HHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999855677778889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 405 PKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 405 ~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+++|||||++|++||.+|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 360 ~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~ 423 (480)
T cd03337 360 PKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRA 423 (480)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999999998888999999999999999999999999999999999999986
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-90 Score=719.38 Aligned_cols=424 Identities=30% Similarity=0.569 Sum_probs=404.1
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhccc
Q 012157 9 KDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEE 88 (470)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~ 88 (470)
+++.+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~ 81 (484)
T cd03342 2 NPKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDI 81 (484)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCC-CCHHHHHHHHHHHhhcccccchH
Q 012157 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDT-NDRATMLGLVKSCIGTKFTSQFG 167 (470)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~-~~~~~l~~v~~t~l~sk~~~~~~ 167 (470)
+||||||+++|+++|++++.+++++|+||..|++||+.|++.++++|++++.+++. .|.+.+.++++|++++|+.+.+.
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~ 161 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLA 161 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHH
Confidence 99999999999999999999999999999999999999999999999999999874 47889999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEeccccc
Q 012157 168 DLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEY 247 (470)
Q Consensus 168 ~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le~ 247 (470)
+.|++++++|+..++. ++ ..+|++ +|+|++++|+++++|++++|++|++++.++ .||++++||+|++++++|++
T Consensus 162 ~~l~~l~~~A~~~v~~---~~-~~~~~~-~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~-~m~~~~~n~~Ill~~~~le~ 235 (484)
T cd03342 162 DQLTEIVVDAVLAIYK---PD-EPIDLH-MVEIMQMQHKSDSDTKLIRGLVLDHGARHP-DMPKRVENAYILTCNVSLEY 235 (484)
T ss_pred HHHHHHHHHHHHHHhh---cC-CccChh-HeEEEEecCCChhhceEEeeEEEecCCCCC-CCCccccCceEEEEeCCCCC
Confidence 9999999999999975 22 257775 599999999999999999999999999998 89999999999999999999
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHHh
Q 012157 248 KKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKAC 327 (470)
Q Consensus 248 ~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~t 327 (470)
++++...++.++ ||+++++|++.++++|.++||++++++++++|+|||++|
T Consensus 236 ~~~~~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~t 286 (484)
T cd03342 236 EKTEVNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLAC 286 (484)
T ss_pred CccccCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHh
Confidence 888776655432 999999999999999999999999999999999999999
Q ss_pred CCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeE
Q 012157 328 GAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKL 407 (470)
Q Consensus 328 Ga~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~v 407 (470)
||+++++++++++.++|+ |+.++++.+|+++|++|++|+.++.+||+|||+|+.+++|.||+++||++++++++++|++
T Consensus 287 Ga~ii~~l~~~~~~~LG~-~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~ 365 (484)
T cd03342 287 GGVAMNSVDDLSPECLGY-AGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCV 365 (484)
T ss_pred CCEEecccccCChhhCcc-cceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 408 VPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 408 v~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 366 vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~ 426 (484)
T cd03342 366 VPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQD 426 (484)
T ss_pred EeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999998888999999999999999999999999999999999999985
No 20
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-91 Score=658.04 Aligned_cols=451 Identities=35% Similarity=0.589 Sum_probs=430.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhcccccCCh
Q 012157 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGT 93 (470)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (470)
..+-+++|.+|+.|++++++.++|||||+||||||+.+.|+++|||||+|||+.|++-||+++|+++.+.+||.++||||
T Consensus 21 ~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 21 KEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCc
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHHHHHHH
Q 012157 94 TSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADL 173 (470)
Q Consensus 94 tt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~l 173 (470)
||||+|+++||+.+..|+++|+||..|++.|+.|.+.++++|++++.|++.+|++.|.+-+.|+|+||+.+.++..++.+
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEeccccccccccc
Q 012157 174 AIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQ 253 (470)
Q Consensus 174 ~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le~~~~~~~ 253 (470)
.++|+.++... ....++|++ +|+|.+..||.++|+++++|++|++..... ..|+.++++||-++.|.|.++++++.
T Consensus 181 AVdAV~kv~dp--~~~~nvdlk-dIkivkklGgtvdDte~i~glvl~~~~~~~-~gptriekAkIglIQF~iS~PKtdme 256 (534)
T KOG0358|consen 181 AVDAVLKVIDP--ENATNVDLK-DIKIVKKLGGTVDDTELIKGLVLTQKASKS-AGPTRIEKAKIGLIQFQISPPKTDME 256 (534)
T ss_pred HHHHHHhccCc--ccccccchh-hhhhHHhhCCccchhhhhcceEEeeecccC-CCcchhhhceeeEEEEEecCCCCCcc
Confidence 99999988632 223457776 599999999999999999999999887765 47899999999999999999999999
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCC-----CHHHHHHHHHcCCeeeecCCHhHHHHHHHHhC
Q 012157 254 TNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKACG 328 (470)
Q Consensus 254 ~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i-----~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tG 328 (470)
..+.++++.++++++++|+.|+..++++|++.|+||+++|++| ++.+++||.+.+|||+.++.+++++.+|+.+|
T Consensus 257 n~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~ 336 (534)
T KOG0358|consen 257 NQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLG 336 (534)
T ss_pred cceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987 88999999999999999999999999999999
Q ss_pred CeeccCCCCCCCCccCCccceEEEE-EECCeEEEEEEecCC-CCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 012157 329 AVIVNRPDELQESDVGTGAGLFEVK-KIGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK 406 (470)
Q Consensus 329 a~i~s~~~~l~~~~lG~~~~~v~~~-~~g~~~~~~~~~~~~-~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~ 406 (470)
+.++.+++.+++..+|+ ++.+++. .-|+.+++.+.++.+ ++.+||++||++.-.++|.+|++|||||++|++.+.+.
T Consensus 337 c~Pia~id~f~~d~Lg~-adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~ 415 (534)
T KOG0358|consen 337 CKPIADIDHFTADKLGS-ADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRA 415 (534)
T ss_pred CeecchhhhcChhhcCc-chhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccc
Confidence 99999999999999999 9999887 446669999999876 88999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 012157 407 LVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469 (470)
Q Consensus 407 vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~ 469 (470)
++||||+.|+.++..|..++....|.+++++++||+|||.||++|++|||++|++++++||++
T Consensus 416 li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~ 478 (534)
T KOG0358|consen 416 LIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNR 478 (534)
T ss_pred eecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 21
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.3e-86 Score=686.72 Aligned_cols=407 Identities=47% Similarity=0.775 Sum_probs=391.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhcccccCCh
Q 012157 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGT 93 (470)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (470)
..+|.+++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHHHHHHH
Q 012157 94 TSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADL 173 (470)
Q Consensus 94 tt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~l 173 (470)
||+++|+++|++++.+++++|+||..|++||+.|++.++++|+++++|++..+.+.+.++++|+++||+.+.|+++++++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l 162 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGEL 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999977778899999999999999999999999999
Q ss_pred HHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEeccccccccccc
Q 012157 174 AIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQ 253 (470)
Q Consensus 174 ~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le~~~~~~~ 253 (470)
+++|+..++.+.. .++.. +|+|++++|+++.+|++++|++|++++.++ .||+.++||+|++++++|++
T Consensus 163 ~~~Ai~~v~~~~~----~~~~~-~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~-~m~~~~~n~~Ili~~~~Le~------ 230 (464)
T cd00309 163 VVDAVLKVGKENG----DVDLG-VIRVEKKKGGSLEDSELVVGMVFDKGYLSP-YMPKRLENAKILLLDCKLEY------ 230 (464)
T ss_pred HHHHHHHhccccC----ccccc-eEEEEecCCCCcccceeeeeEEEecCCCCC-CCceeecCceEEEEecCcce------
Confidence 9999999985321 34443 699999999999999999999999999998 89999999999999999975
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHHhCCeecc
Q 012157 254 TNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVN 333 (470)
Q Consensus 254 ~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tGa~i~s 333 (470)
+|+++++|++.++++|.++||++++++++++|+|||++|||++++
T Consensus 231 -----------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~ 275 (464)
T cd00309 231 -----------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVS 275 (464)
T ss_pred -----------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEec
Confidence 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCH
Q 012157 334 RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGA 413 (470)
Q Consensus 334 ~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~ 413 (470)
+++++++..+|+ |+.+++.++|+++|++|++++.++.+||+|||+|+.+++|+||+++||++++++++++|++|||||+
T Consensus 276 ~~~~~~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa 354 (464)
T cd00309 276 RLEDLTPEDLGT-AGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGA 354 (464)
T ss_pred ccccCCcccCcc-ccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcH
Confidence 999999999999 9999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 414 TELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 414 ~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 355 ~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~ 409 (464)
T cd00309 355 AEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRA 409 (464)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999888999999999999999999999999999999999999985
No 22
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-87 Score=625.49 Aligned_cols=456 Identities=30% Similarity=0.498 Sum_probs=432.3
Q ss_pred CCccccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecC--CCCEEEecChHHHHhhccccChhHHHHHH
Q 012157 3 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDA--SGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (470)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~--~g~~~iTndg~tIl~~l~~~hP~a~ll~~ 80 (470)
.|+.+++++.++++|+.+|++.|.++..++++|+|||||+||+|+++.. .|.+.+||||+|||+++.+++|+||+|++
T Consensus 2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 3678899999999999999999999999999999999999999999864 46799999999999999999999999999
Q ss_pred HHhhhcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCC---CHHHHHHHHHHH
Q 012157 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTN---DRATMLGLVKSC 157 (470)
Q Consensus 81 ~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~---~~~~l~~v~~t~ 157 (470)
.++-||.++|||||+|++|+++||++|.+|+.+.+||..|++||+.|.+.|++.|.+.++.-..+ -+++|.++++|.
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTT 161 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTT 161 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877653211 167899999999
Q ss_pred hhcccccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCe
Q 012157 158 IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPR 237 (470)
Q Consensus 158 l~sk~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~k 237 (470)
|+||+.+...++|++++++|+.++. |..+++ .|+|+|..||+++||++-+|+++++.+.. +.|+.++|++
T Consensus 162 L~SKiLsq~kehFaelavdAV~rLk-----Gs~nL~---~IqIIK~~Gg~l~dSfLDeGFlL~K~igv--~qpkriena~ 231 (527)
T KOG0363|consen 162 LSSKILSQDKEHFAELAVDAVLRLK-----GSTNLE---AIQIIKKLGGKLEDSFLDEGFLLDKKIGV--NQPKRIENAK 231 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhc-----CCCCcc---ceeeehhcCCccccccccccceeccccCC--CCcccccccc
Confidence 9999999999999999999999985 332333 59999999999999999999999999877 6899999999
Q ss_pred EEEEecccccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCC
Q 012157 238 IILLDSPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (470)
Q Consensus 238 Ill~~~~Le~~~~~~-~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~ 316 (470)
|++-|.+++..+-+. .+.+.+.+...+.++...|++.++..+++|.++|+|+.+...-|.++..++|...||+.+...+
T Consensus 232 iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHAD 311 (527)
T KOG0363|consen 232 ILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHAD 311 (527)
T ss_pred eEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeeccc
Confidence 999999999987765 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Q 012157 317 KTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMS 396 (470)
Q Consensus 317 ~~~L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~ 396 (470)
.+-++|++.+||+.|++++|+++..++|+ |+.+++..+|+++++.|++++.+..|||+|||+|.+.++|.+|++|||||
T Consensus 312 FdGiERLalvtGGeI~STFd~p~~~klG~-C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALc 390 (527)
T KOG0363|consen 312 FDGIERLALVTGGEIVSTFDNPELVKLGE-CDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALC 390 (527)
T ss_pred chhHHHHhhcccceeeeccCCcchhcccc-chhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 012157 397 VARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469 (470)
Q Consensus 397 ~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~ 469 (470)
++....++.+++.||||.||..+..+.+++.+.++++..++++|++||..+|.+|+.|+|+|+.+++++||+.
T Consensus 391 VLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~ 463 (527)
T KOG0363|consen 391 VLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAE 463 (527)
T ss_pred HHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974
No 23
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.2e-86 Score=682.83 Aligned_cols=407 Identities=32% Similarity=0.561 Sum_probs=384.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhcccccCChh
Q 012157 15 ESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTT 94 (470)
Q Consensus 15 ~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 94 (470)
..+.+++..|+.||.++++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhcccc-C-CCCCHHHHHHHHHHHhhcccccchHHHHHH
Q 012157 95 SVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMP-I-DTNDRATMLGLVKSCIGTKFTSQFGDLIAD 172 (470)
Q Consensus 95 t~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~-v-~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~ 172 (470)
|+++|+++|++++.+++++|+||..|++||+.|++.++++|++++++ + +..+.+.+.++++|+++||+.+ +.+++++
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~ 162 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSP 162 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccc-hHHHHHH
Confidence 99999999999999999999999999999999999999999999876 4 4456788999999999999875 7999999
Q ss_pred HHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEecccccccccc
Q 012157 173 LAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252 (470)
Q Consensus 173 l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le~~~~~~ 252 (470)
++++|+.+++++. .+ .+|++ +|+|++++|++++||++++|++|++++. .++++++||+|++++++|++
T Consensus 163 l~~~a~~~~~~~~-~~--~~~~~-~i~i~ki~Gg~~~ds~lv~Giv~~~~~~---~~~~~~~n~~Ili~~~~Le~----- 230 (472)
T cd03341 163 LVAEACISVLPEN-IG--NFNVD-NIRVVKILGGSLEDSKVVRGMVFKREPE---GSVKRVKKAKVAVFSCPFDI----- 230 (472)
T ss_pred HHHHHHHHHhhcc-CC--cCChh-HeEEEEecCCCcccceEEeeEEEccccC---CCceeccCCcEEEEeccccC-----
Confidence 9999999997531 12 46765 5999999999999999999999988764 35688999999999999875
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHHhCCeec
Q 012157 253 QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIV 332 (470)
Q Consensus 253 ~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tGa~i~ 332 (470)
|++||+++++|++.++++|.++||++++++++++|+|||++|||+++
T Consensus 231 ---------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii 277 (472)
T cd03341 231 ---------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPL 277 (472)
T ss_pred ---------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 89999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccCCccceEEEEEECCeEEEEEEecCC-CCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecC
Q 012157 333 NRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGG 411 (470)
Q Consensus 333 s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~-~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GG 411 (470)
+++++++++++|+ |+.|+++++|+++|++|++|.. ++.+||+|||+|+.+++|+||+++||++++++++++|++||||
T Consensus 278 ~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGG 356 (472)
T cd03341 278 PRLGAPTPEEIGY-CDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGA 356 (472)
T ss_pred cccccCCHhHCCC-ceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCc
Confidence 9999999999999 9999999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 412 GATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 412 G~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
|++|++++.+|++++...++++++++++|++||+.||++|++|||+||.+++++|+.
T Consensus 357 G~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~ 413 (472)
T cd03341 357 GATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYA 413 (472)
T ss_pred CHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999998888899999999999999999999999999999999999975
No 24
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-84 Score=671.43 Aligned_cols=449 Identities=36% Similarity=0.575 Sum_probs=421.0
Q ss_pred ccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhccccc
Q 012157 11 SLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVG 90 (470)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 90 (470)
+.+..+|.+++.+|+.|+..++++|++||||+||+|||+++.|+++|||||+||++.|+++||+|+|+++++++||+++|
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999779999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHHHH
Q 012157 91 DGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLI 170 (470)
Q Consensus 91 DGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l 170 (470)
|||||++||+++||+++.+++++|+||..|++||++|.+.+.++|++++++++..+.+. +++.|++++|+.+++ +++
T Consensus 83 DGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~--~~~~t~v~sk~~~~~-~~i 159 (524)
T COG0459 83 DGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL--KIAITSVASKSANSD-EEI 159 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh--hhhhheeeeeeccCh-HHH
Confidence 99999999999999999999999999999999999999999999999999997644444 899999999987776 999
Q ss_pred HHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCc-ceecCCeEEEEeccccccc
Q 012157 171 ADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMR-RKIVNPRIILLDSPLEYKK 249 (470)
Q Consensus 171 ~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~-~~~~~~kIll~~~~Le~~~ 249 (470)
++++++|+.+++..+. |++ .|.+.+..|+...++++++|++|++++.++..|| +.++||+|++++++|+..+
T Consensus 160 ~~lv~~Av~~v~~~~~------d~~-~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k 232 (524)
T COG0459 160 GELVVEAVEKVGKEQS------DLD-GIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKK 232 (524)
T ss_pred HHHHHHHHHHhccccc------ccC-CeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEcccccccc
Confidence 9999999999985321 333 5999999999999999999999999665555899 8999999999999999999
Q ss_pred ccccceEEecCHHHHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEecCCCCHHHHHHHHHcCCeeeecCCHhHH-HHHHHH
Q 012157 250 GENQTNAELVKEEDWEVLLKMEE-EYIENLCMQILKFKPD-LVITEKGLSDLACHYLSKAGVSAIRRLRKTDN-NRIAKA 326 (470)
Q Consensus 250 ~~~~~~~~i~~~~~l~~~~~~e~-~~l~~~~~~i~~~~~~-lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L-~~ia~~ 326 (470)
++.+.++.++++.+|..+.+.|+ +.+..+++++.+.++| +++++++|+|.++++|.+.+|++++++.++++ ++|+.+
T Consensus 233 ~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~ 312 (524)
T COG0459 233 PELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKL 312 (524)
T ss_pred ccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHc
Confidence 99999999999999999999999 9999999999999999 99999999999999999999999999999999 899999
Q ss_pred hCCeeccCCCCCCCCccCC-ccceEEEEEECCeEEEEEEecCC--CCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhc
Q 012157 327 CGAVIVNRPDELQESDVGT-GAGLFEVKKIGDEFFAFIVDCKD--PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 403 (470)
Q Consensus 327 tGa~i~s~~~~l~~~~lG~-~~~~v~~~~~g~~~~~~~~~~~~--~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~ 403 (470)
+||++++.++++++..+|. .|..+++.+++++++.+|+++.. ++.+||++||+|+.+++|.+|+++|||++++++++
T Consensus 313 ~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave 392 (524)
T COG0459 313 GGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVE 392 (524)
T ss_pred cCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998882 28999999999999999999985 88999999999999999999999999999999999
Q ss_pred CCeEEecCCHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 012157 404 NPKLVPGGGATELTVSATLKQKSSSIEG-IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469 (470)
Q Consensus 404 ~~~vv~GGG~~E~~l~~~L~~~~~~~~~-~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~ 469 (470)
+|++|||||++|++++.+|++++....+ ++|+++++|++||+.||++|++|||+||.+++++||+.
T Consensus 393 ~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~ 459 (524)
T COG0459 393 EGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSA 459 (524)
T ss_pred cCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 9999999999999999999987444455 89999999999999999999999999999999999973
No 25
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.2e-83 Score=674.93 Aligned_cols=426 Identities=39% Similarity=0.698 Sum_probs=407.3
Q ss_pred HHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhcccccCChhHHHHHHHHHHHHHHHH
Q 012157 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEF 110 (470)
Q Consensus 31 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vlL~~~ll~~~~~l 110 (470)
|+++|++||||+|++|||++..|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhcccccCCCcc
Q 012157 111 IDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLR 190 (470)
Q Consensus 111 i~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~l~~~a~~~~~~~~~~g~~ 190 (470)
+++|+||..|++||+.+++.++++|++++++++..+ +.++++++|++++|+...|.++|++++++|+..+.. .
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~----~-- 153 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS----N-- 153 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT----T--
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhhcc----c--
Confidence 999999999999999999999999999999987533 889999999999999999999999999999944432 1
Q ss_pred ccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEecccccccccccceEEecCHHHHHHHHHH
Q 012157 191 EVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKM 270 (470)
Q Consensus 191 ~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~ 270 (470)
+|+. +++++++.|++.+||++++|++|++++.++ +||+++++|+|++++++|+++++ .+.++.++++++++.+.++
T Consensus 154 -~~~~-~i~i~~i~g~~~~dS~li~Giv~~~~~~~~-~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~ 229 (485)
T PF00118_consen 154 -FDLD-NIKIIKIPGGSISDSELINGIVLDKGFSSP-NMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQ 229 (485)
T ss_dssp -HHGG-GEEEEEEESSSSGGEEEESEEEESSSBSST-TSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHH
T ss_pred -cccc-chhhhhhccccccccccccceeeecccccc-ccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhh
Confidence 4444 499999999999999999999999999998 89999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHHhCCeeccCCCCCCCCccCCccceE
Q 012157 271 EEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLF 350 (470)
Q Consensus 271 e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v 350 (470)
|+++++++++++.+.|+++|+++++|++.++++|.++||++++++++++|++|+++|||++++++++++++++|+ |+.+
T Consensus 230 e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~-~~~v 308 (485)
T PF00118_consen 230 EKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGF-CKSV 308 (485)
T ss_dssp HHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEE-EEEE
T ss_pred hhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhh-hhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988999 9999
Q ss_pred EEEEECCeEEEEEE--ecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcC
Q 012157 351 EVKKIGDEFFAFIV--DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSS 428 (470)
Q Consensus 351 ~~~~~g~~~~~~~~--~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~ 428 (470)
++..+++++|++|+ ++..++.+||+|||+++.+++|+|++++||+++++++++++++|||||++|++|+++|++++..
T Consensus 309 ~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~ 388 (485)
T PF00118_consen 309 EEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKS 388 (485)
T ss_dssp EEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHC
T ss_pred hhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhc
Confidence 99999999999999 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 429 IEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 429 ~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
.++.+++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 389 ~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 428 (485)
T PF00118_consen 389 LSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKS 428 (485)
T ss_dssp SSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHH
T ss_pred ccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHh
Confidence 9999999999999999999999999999999999999986
No 26
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-85 Score=627.53 Aligned_cols=465 Identities=71% Similarity=1.092 Sum_probs=454.8
Q ss_pred CCCCccccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHH
Q 012157 1 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (470)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~ 80 (470)
|++|+..++.++.+++|..+...|++|++++++++++|+||+.|.||+.++.|.+..||||..||+.+++.||+|+-+.+
T Consensus 1 m~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmie 80 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIE 80 (527)
T ss_pred CCCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhc
Q 012157 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGT 160 (470)
Q Consensus 81 ~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~s 160 (470)
.+.+||+++|||||||++|++++|.++..++++|+||..|+++|.+|++.++..++++++|+|.+|...+..++.+++.+
T Consensus 81 l~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~t 160 (527)
T KOG0364|consen 81 LSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGT 160 (527)
T ss_pred hhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEE
Q 012157 161 KFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIIL 240 (470)
Q Consensus 161 k~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll 240 (470)
|+.+.|++.++.+..+|+..++.+ +|. .+|+.++.++.|++||.+++|++++|+.+.++..|| .|++.++||+|++
T Consensus 161 k~~~~~~~~~~~lal~avk~V~~~--~g~-e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hp-kmrr~IenprivL 236 (527)
T KOG0364|consen 161 KFNSRWSDLICNLALDAVKTVGVE--NGR-EIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHP-KMRRAIENPRIVL 236 (527)
T ss_pred hhhhhhcchhhhHHHHHHHHhhhc--cCc-eechhhhccccccCcccccccceecceeeccccCcH-HHHHHhhcCcEEE
Confidence 999999999999999999999874 343 799999999999999999999999999999999999 8999999999999
Q ss_pred EecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHH
Q 012157 241 LDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDN 320 (470)
Q Consensus 241 ~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L 320 (470)
++|+|+|.+.++.+.+++...+++...++-|++++..+++.|....+++|++++++++.+++||.+.||.+++++++.|-
T Consensus 237 lD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn 316 (527)
T KOG0364|consen 237 LDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDN 316 (527)
T ss_pred ecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHH
Q 012157 321 NRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARN 400 (470)
Q Consensus 321 ~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~ 400 (470)
.|+++++||+++++.+++.+.+.|+.|+.|++.++|+++|.||..|+.++.|||++|||+..+++|.+|-+.||+.+.|+
T Consensus 317 ~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn 396 (527)
T KOG0364|consen 317 NRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARN 396 (527)
T ss_pred chhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 012157 401 IIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469 (470)
Q Consensus 401 ~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~ 469 (470)
.+-+|+++||||++||.+|+.|+..+...++-++..+.+.|.||+.+|++|++|+|.+++.+++.+++.
T Consensus 397 ~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~k 465 (527)
T KOG0364|consen 397 VIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAK 465 (527)
T ss_pred hccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHH
Confidence 999999999999999999999999898899999999999999999999999999999999999999874
No 27
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.9e-80 Score=645.13 Aligned_cols=405 Identities=23% Similarity=0.346 Sum_probs=372.1
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccCh----hHHHHHHHHhhhcccc
Q 012157 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEV 89 (470)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~ 89 (470)
..+|.+++..|+.|+..++++++|||||+||+|||+++.|+++|||||+||+++++++|| +|+|++++|++|++++
T Consensus 5 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 84 (542)
T PRK12849 5 IKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVA 84 (542)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCcc
Confidence 568999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHHH
Q 012157 90 GDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDL 169 (470)
Q Consensus 90 GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~ 169 (470)
||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.++++|+. +++++
T Consensus 85 GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~~~~l~~va~ts~------~~~~~ 156 (542)
T PRK12849 85 GDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--GSEEIAQVATISA------NGDEE 156 (542)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------CChHH
Confidence 999999999999999999999999999999999999999999999999999986 5778999999884 47899
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCC-cceeeeEEEecccCCCC------CCcceecCCeEEEEe
Q 012157 170 IADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLED-SRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (470)
Q Consensus 170 l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~-s~li~Giv~~~~~~~~~------~~~~~~~~~kIll~~ 242 (470)
+++++++|+..++. ++. +.+. .|+..+| +++++|++|++++.++. .|++.++||+|++++
T Consensus 157 l~~lv~~Av~~v~~---~g~--------i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 223 (542)
T PRK12849 157 IGELIAEAMEKVGK---DGV--------ITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTD 223 (542)
T ss_pred HHHHHHHHHHHhcc---CCc--------EeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeec
Confidence 99999999999974 331 3343 6888875 89999999999999872 368999999999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHc------CCeeeecCC
Q 012157 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRLR 316 (470)
Q Consensus 243 ~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~------~I~vv~~v~ 316 (470)
+.+ ++++++. ++++++.+.|+++||++++|++.++++|.++ +|+++++++
T Consensus 224 ~~i-------------~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~ 279 (542)
T PRK12849 224 KKI-------------SSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPG 279 (542)
T ss_pred CCc-------------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCC
Confidence 964 4555544 5789999999999999999999999999999 899999877
Q ss_pred -----HhHHHHHHHHhCCeecc-----CCCCCCCCccCCccceEEEEEECCeEEEEEEecCCC-----------------
Q 012157 317 -----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP----------------- 369 (470)
Q Consensus 317 -----~~~L~~ia~~tGa~i~s-----~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~----------------- 369 (470)
+++|+|||.+|||++++ ++++++++++|+ |+.|++.+ ++|++++++.++
T Consensus 280 ~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~g~~~~~~i~~r~~~l~~~~~~~ 355 (542)
T PRK12849 280 FGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGR-AKRVTITK---DNTTIVDGAGDKEAIEARVAQIRRQIEET 355 (542)
T ss_pred ccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCce-eeEEEEee---eeEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 56699999999999999 689999899999 99999765 788999887654
Q ss_pred ------------------CeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCC
Q 012157 370 ------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (470)
Q Consensus 370 ------------------~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~ 431 (470)
+.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++ ..++
T Consensus 356 ~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g 433 (542)
T PRK12849 356 TSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNG 433 (542)
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCCh
Confidence 589999999999999999999999999999999998 99999999999999999998 8889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 012157 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469 (470)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~ 469 (470)
++++++++|++||+.||++|++|||+|+.+++++|++.
T Consensus 434 ~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~ 471 (542)
T PRK12849 434 DQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLEL 471 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999863
No 28
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.5e-80 Score=643.77 Aligned_cols=406 Identities=23% Similarity=0.361 Sum_probs=375.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccCh----hHHHHHHHHhhhccc
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (470)
...+|.+++..|+.||..++++++|||||+|++|||+++.|+++|||||+||+++|+++|| +++|+++++++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 3578999999999999999999999999999999999999999999999999999999999 799999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHH
Q 012157 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (470)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~ 168 (470)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+++.+++.|++ ++++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~~~~l~~va~ts~------~~~~ 155 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--DKEEIAQVATISA------NGDE 155 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHhcc------cchH
Confidence 9999999999999999999999999999999999999999999999999999986 6788999998874 4789
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCC------CCcceecCCeEEEEe
Q 012157 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (470)
Q Consensus 169 ~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~------~~~~~~~~~kIll~~ 242 (470)
.+++++++|+..++. ++ .|.|.+.+| ...++++++|++|++++.++. .||+.++||+|+++|
T Consensus 156 ~ls~lv~~Av~~v~~---~g--------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d 223 (542)
T PRK00013 156 EIGKLIAEAMEKVGK---EG--------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITD 223 (542)
T ss_pred HHHHHHHHHHHHhCc---CC--------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEc
Confidence 999999999999974 23 277777776 778999999999999999872 358899999999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcC------CeeeecCC
Q 012157 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAG------VSAIRRLR 316 (470)
Q Consensus 243 ~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~------I~vv~~v~ 316 (470)
+.+ ++++++. ++++++.+.|++|||++++|++.++++|..++ |+++++++
T Consensus 224 ~~i-------------~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~ 279 (542)
T PRK00013 224 KKI-------------SNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPG 279 (542)
T ss_pred Ccc-------------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCC
Confidence 964 4555544 77899999999999999999999999999996 88988776
Q ss_pred -----HhHHHHHHHHhCCeecc-----CCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCC----------------
Q 012157 317 -----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPK---------------- 370 (470)
Q Consensus 317 -----~~~L~~ia~~tGa~i~s-----~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~---------------- 370 (470)
+++|+|||.+||+++++ ++++++++++|+ |+.+++.+ ++|++|+++.+++
T Consensus 280 ~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 355 (542)
T PRK00013 280 FGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQ-AKKVVVTK---DNTTIVDGAGDKEAIKARVAQIKAQIEET 355 (542)
T ss_pred cccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCe-eeEEEEec---CEEEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 88999999999999999 799999999999 99999875 7899998886654
Q ss_pred -------------------eEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCC
Q 012157 371 -------------------ACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (470)
Q Consensus 371 -------------------~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~ 431 (470)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+++ +..++
T Consensus 356 ~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~ 433 (542)
T PRK00013 356 TSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNG 433 (542)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCCh
Confidence 78999999999999999999999999999999998 9999999999999999988 77888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 434 ~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~ 470 (542)
T PRK00013 434 DEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKN 470 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999986
No 29
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-82 Score=606.12 Aligned_cols=453 Identities=32% Similarity=0.503 Sum_probs=430.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhcccccCC
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDG 92 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (470)
+...|+.+|.+|..|+.+++++++|||||-|++||++|+.|++.+||||+|||+.+.++||++++|++.++.|++++|||
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDg 92 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDG 92 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCCCCHHHHHHHHHHHhhcccccchHHHHH
Q 012157 93 TTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDK-IAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIA 171 (470)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~-~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~ 171 (470)
||++++++++|++++.+|+..++||..|++||+.|+..+++++.+ ++.|+|...++.|.++++|++++|+.....++|+
T Consensus 93 ttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~ 172 (545)
T KOG0360|consen 93 TTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFT 172 (545)
T ss_pred ceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHH
Confidence 999999999999999999999999999999999999999999964 7899998889999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEeccccccccc
Q 012157 172 DLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 251 (470)
Q Consensus 172 ~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le~~~~~ 251 (470)
.++++|+..+.....+|.....+. .++|.|..|.+.-+|.++.|+.++...++. .||..+.++||+++++.|...+.+
T Consensus 173 ~~Vvda~l~v~~~~~~ge~~ypi~-~vnILkahG~s~~eS~l~~GyaLnc~~asq-~m~~~i~~~Kiacld~~Lqk~km~ 250 (545)
T KOG0360|consen 173 EMVVDALLAVKILDINGEPHYPIN-SVNILKAHGKSQIESMLLPGYALNCSVASQ-MMPLRIKNAKIACLDFTLQKTKMK 250 (545)
T ss_pred HHHHHHHHHHhhcccCCceecccc-ceeEEecCCccchhheeecceeeeccHhhh-ccccccccceeeeEeccccccccc
Confidence 999999988765333454334444 599999999999999999999999999887 799999999999999999999999
Q ss_pred ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHHhCCee
Q 012157 252 NQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVI 331 (470)
Q Consensus 252 ~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tGa~i 331 (470)
....+.+.+++.++.+.+.|..+.+..+++|...|+|||+++++|||.+++||.++|+++++|+.+++|++|+++||+++
T Consensus 251 lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~ 330 (545)
T KOG0360|consen 251 LGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATL 330 (545)
T ss_pred ccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC------CCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012157 332 VNRPDE------LQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (470)
Q Consensus 332 ~s~~~~------l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~ 405 (470)
++++.+ +++..+|+ |+.|.+.+|+++.++++.+.+.. .++|+|||++++.++|++|.+|||+++++..++.+
T Consensus 331 ~sSla~l~geetf~~~~lG~-a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~ 408 (545)
T KOG0360|consen 331 LSSLANLEGEETFEPASLGS-ADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLESK 408 (545)
T ss_pred eehhhccccccccChhhccc-hhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhccC
Confidence 999874 56678999 99999999999999999998766 99999999999999999999999999999999999
Q ss_pred eEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 012157 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469 (470)
Q Consensus 406 ~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~ 469 (470)
++||||||+|.+|+-+|+.++.+..++|+.++.-|+.||.+||++|+.|++.|+.+++++||+.
T Consensus 409 ~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~ 472 (545)
T KOG0360|consen 409 SVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAY 472 (545)
T ss_pred ccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 30
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.5e-79 Score=637.30 Aligned_cols=404 Identities=25% Similarity=0.374 Sum_probs=372.4
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccCh----hHHHHHHHHhhhcccc
Q 012157 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEV 89 (470)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~ 89 (470)
..+|.+++..|+.||+.++++++|||||+|++|||+++.|+++|||||+||+++++++|| +++|+++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 467899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHHH
Q 012157 90 GDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDL 169 (470)
Q Consensus 90 GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~ 169 (470)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ |.+++.++++|+++ .+++
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~~~~l~~va~ts~~------~~~~ 154 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--TKEEIAQVATISAN------GDEE 154 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcC------ChHH
Confidence 999999999999999999999999999999999999999999999999999996 68899999999964 4799
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCC-cceeeeEEEecccCCCC------CCcceecCCeEEEEe
Q 012157 170 IADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLED-SRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (470)
Q Consensus 170 l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~-s~li~Giv~~~~~~~~~------~~~~~~~~~kIll~~ 242 (470)
+++++++|+..++. ++ .|.+ .+|++..| +++++|++|++++.++. .|+++++||+|++++
T Consensus 155 l~~lv~~A~~~v~~---~~--------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 221 (520)
T cd03344 155 IGELIAEAMEKVGK---DG--------VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTD 221 (520)
T ss_pred HHHHHHHHHHHhcc---CC--------cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEEC
Confidence 99999999999874 23 1444 47888888 79999999999998872 245789999999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCC------eeeecC-
Q 012157 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV------SAIRRL- 315 (470)
Q Consensus 243 ~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~vv~~v- 315 (470)
++| ++++++. ++++.+.+.|++|||++++|++.++++|..+|| +++++.
T Consensus 222 ~~l-------------~~~~~l~-----------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~ 277 (520)
T cd03344 222 KKI-------------SSIQELL-----------PILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPG 277 (520)
T ss_pred CCC-------------CCHHHHH-----------HHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCC
Confidence 995 3555543 578999999999999999999999999999999 786655
Q ss_pred ----CHhHHHHHHHHhCCeecc-----CCCCCCCCccCCccceEEEEEECCeEEEEEEecCCC-----------------
Q 012157 316 ----RKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP----------------- 369 (470)
Q Consensus 316 ----~~~~L~~ia~~tGa~i~s-----~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~----------------- 369 (470)
++++++|||.+|||++++ ++++++++++|+ |+.+++.+ ++|+++.++..+
T Consensus 278 ~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 353 (520)
T cd03344 278 FGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGR-AKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEET 353 (520)
T ss_pred CCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCc-ceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999 788998889999 99999876 688999887654
Q ss_pred ------------------CeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCC
Q 012157 370 ------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (470)
Q Consensus 370 ------------------~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~ 431 (470)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++++|++++. .++
T Consensus 354 ~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~ 431 (520)
T cd03344 354 TSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNG 431 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CCh
Confidence 599999999999999999999999999999999998 999999999999999999988 889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 432 ~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~ 468 (520)
T cd03344 432 DEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLE 468 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999986
No 31
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=5.7e-79 Score=640.32 Aligned_cols=406 Identities=21% Similarity=0.330 Sum_probs=372.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccCh----hHHHHHHHHhhhccc
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (470)
+..+|.+++..|+.||..++++++|||||+|++|||+++.|+++|||||+||+++++++|| +++|+++++++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 5788899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHH
Q 012157 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (470)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~ 168 (470)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.++++|++ ++++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~~~~l~~va~ts~------~~~~ 167 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--TKEDILNVATISA------NGDV 167 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHc------CChH
Confidence 9999999999999999999999999999999999999999999999999999996 5788999999985 3478
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCc-ceeeeEEEecccCCCC------CCcceecCCeEEEE
Q 012157 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDS-RVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (470)
Q Consensus 169 ~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s-~li~Giv~~~~~~~~~------~~~~~~~~~kIll~ 241 (470)
.+++++++|+..++. ++. |.+.+|+++++| ++++|++|++++.++. .|++.++||+|+++
T Consensus 168 ~l~~li~eAv~~vg~---~g~----------I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~ 234 (555)
T PTZ00114 168 EIGSLIADAMDKVGK---DGT----------ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVT 234 (555)
T ss_pred HHHHHHHHHHHHhCc---CCc----------EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEE
Confidence 999999999999974 331 455789999998 7999999999999872 36899999999999
Q ss_pred ecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcC------Ceeeec-
Q 012157 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAG------VSAIRR- 314 (470)
Q Consensus 242 ~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~------I~vv~~- 314 (470)
+++|+ ++++ +.++++++.+.|++|+|++++|++.++++|..++ |+++++
T Consensus 235 d~~L~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~ 290 (555)
T PTZ00114 235 DKKIS-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAP 290 (555)
T ss_pred cCCCC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecC
Confidence 99986 3333 4577889999999999999999999999999986 888866
Q ss_pred ----CCHhHHHHHHHHhCCeeccCC------CCCCCCccCCccceEEEEEECCeEEEEEEecC-----------------
Q 012157 315 ----LRKTDNNRIAKACGAVIVNRP------DELQESDVGTGAGLFEVKKIGDEFFAFIVDCK----------------- 367 (470)
Q Consensus 315 ----v~~~~L~~ia~~tGa~i~s~~------~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~----------------- 367 (470)
+++++|+|||.+|||+++++. +++++.++|+ |+.|++.+ ++++++.++.
T Consensus 291 ~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~-a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~ 366 (555)
T PTZ00114 291 GFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGS-AKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIE 366 (555)
T ss_pred CCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCC-CceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHH
Confidence 778999999999999999997 7788889999 99999887 4566666654
Q ss_pred ------------------CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhc--
Q 012157 368 ------------------DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS-- 427 (470)
Q Consensus 368 ------------------~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~-- 427 (470)
+++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|..|++++.
T Consensus 367 ~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~ 445 (555)
T PTZ00114 367 RTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDN 445 (555)
T ss_pred hcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhcc
Confidence 67899999999999999999999999999999999988 999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 428 SIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 428 ~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
..++++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 446 ~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~ 486 (555)
T PTZ00114 446 ELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE 486 (555)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 57789999999999999999999999999999999999975
No 32
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.7e-79 Score=636.37 Aligned_cols=406 Identities=21% Similarity=0.327 Sum_probs=372.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccCh----hHHHHHHHHhhhccc
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (470)
...+|.+++..|++|++.++++++|||||+||+|||+++.|+++|||||+||+++++++|| +++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 3567889999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHH
Q 012157 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (470)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~ 168 (470)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.+++++++ ++++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~--~~~~l~~va~~s~------~~~~ 156 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVT--TNAEIAQVATISA------NGDA 156 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------cChH
Confidence 9999999999999999999999999999999999999999999999999999986 5778999998873 5789
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCC------CCcceecCCeEEEEe
Q 012157 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (470)
Q Consensus 169 ~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~------~~~~~~~~~kIll~~ 242 (470)
.+++++++|+..++. ++. +.|.+.. +...++++++|++|++++.++. .||++++||+|+++|
T Consensus 157 ~l~~lv~~Av~~vg~---~g~--------i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d 224 (541)
T PRK12851 157 EIGRLVAEAMEKVGN---EGV--------ITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHE 224 (541)
T ss_pred HHHHHHHHHHHHhcc---cCc--------eEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEc
Confidence 999999999999974 232 5555554 4667899999999999999872 489999999999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCC------eeeec--
Q 012157 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV------SAIRR-- 314 (470)
Q Consensus 243 ~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~vv~~-- 314 (470)
++++ +.++ +.++++.+.+.|+++||++++|++.++++|..+|| +++++
T Consensus 225 ~~i~-------------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~ 280 (541)
T PRK12851 225 KKIS-------------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPG 280 (541)
T ss_pred CCcC-------------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCc
Confidence 9853 2222 55789999999999999999999999999999997 77775
Q ss_pred ---CCHhHHHHHHHHhCCeecc-----CCCCCCCCccCCccceEEEEEECCeEEEEEEecCCC-----------------
Q 012157 315 ---LRKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP----------------- 369 (470)
Q Consensus 315 ---v~~~~L~~ia~~tGa~i~s-----~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~----------------- 369 (470)
+++++|+|||.+|||++++ ++++++++++|+ |+.+++.+ ++|+++.++.++
T Consensus 281 ~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 356 (541)
T PRK12851 281 FGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR-AKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEET 356 (541)
T ss_pred cccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC-ccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 688888889999 99999877 788999887654
Q ss_pred ------------------CeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCC
Q 012157 370 ------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (470)
Q Consensus 370 ------------------~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~ 431 (470)
..+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|..|++++.. ++
T Consensus 357 ~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~ 434 (541)
T PRK12851 357 TSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NG 434 (541)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-Cc
Confidence 388999999999999999999999999999999998 9999999999999999998876 88
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 435 ~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~ 471 (541)
T PRK12851 435 DQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLRE 471 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999986
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=7.4e-79 Score=636.05 Aligned_cols=405 Identities=23% Similarity=0.348 Sum_probs=370.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccCh----hHHHHHHHHhhhccc
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (470)
...+|.+++..|++|+..++++++|||||+||+|||+++.|+++|||||+||+++++++|| +++|+++++++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 3578899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHH
Q 012157 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (470)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~ 168 (470)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.++++|+. ++++
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~~~~l~~va~ts~------~~~~ 154 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--GKKEIAQVATISA------NNDE 154 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------cChH
Confidence 9999999999999999999999999999999999999999999999999999996 6788999999884 4689
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCc-CCcceeeeEEEecccCCCC------CCcceecCCeEEEE
Q 012157 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (470)
Q Consensus 169 ~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~-~~s~li~Giv~~~~~~~~~------~~~~~~~~~kIll~ 241 (470)
++++++++|+..++. ++. |.|.. |+.. ++|++++|++|++++.++. .|++.++||+|+++
T Consensus 155 ~l~~lv~~A~~~v~~---~~~--------i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~ 221 (524)
T TIGR02348 155 EIGSLIAEAMEKVGK---DGV--------ITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILIT 221 (524)
T ss_pred HHHHHHHHHHHHhCc---CCc--------Eeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeec
Confidence 999999999999874 332 44443 6666 6799999999999999872 24889999999999
Q ss_pred ecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHc------CCeeeecC
Q 012157 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRL 315 (470)
Q Consensus 242 ~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~------~I~vv~~v 315 (470)
++.+ ++++++ .++++.+.+.|+++||++++|++.++++|..+ +|++++++
T Consensus 222 d~~i-------------~~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~ 277 (524)
T TIGR02348 222 DKKI-------------SNIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAP 277 (524)
T ss_pred cCCc-------------CCHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECC
Confidence 9974 355554 57889999999999999999999999999987 88899776
Q ss_pred C-----HhHHHHHHHHhCCeecc-----CCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCC---------------
Q 012157 316 R-----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPK--------------- 370 (470)
Q Consensus 316 ~-----~~~L~~ia~~tGa~i~s-----~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~--------------- 370 (470)
+ +++|+|||.+|||++++ ++++++++++|+ |+.+++.+ ++++++.++..++
T Consensus 278 ~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~ 353 (524)
T TIGR02348 278 GFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGK-AKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEE 353 (524)
T ss_pred CccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCC-ceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 4 48999999999999999 899999999999 99999875 6888998775543
Q ss_pred --------------------eEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCC
Q 012157 371 --------------------ACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIE 430 (470)
Q Consensus 371 --------------------~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~ 430 (470)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++ ++..+
T Consensus 354 ~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~ 431 (524)
T TIGR02348 354 TTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDN 431 (524)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCC
Confidence 78999999999999999999999999999999998 999999999999999998 77788
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 431 GIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 431 ~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 432 ~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~ 469 (524)
T TIGR02348 432 EDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKE 469 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999986
No 34
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-79 Score=591.24 Aligned_cols=449 Identities=28% Similarity=0.468 Sum_probs=421.4
Q ss_pred cccccccccccc-hhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhh
Q 012157 6 LVLKDSLKRESG-TKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRT 84 (470)
Q Consensus 6 ~~~~~~~~~~~g-~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~ 84 (470)
.++++|+++.+| +++...|+.||+.+++++||+|||+||+||++|..|+.++|||.+||+++|+++||+|+|++++++.
T Consensus 12 q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~ 91 (537)
T KOG0362|consen 12 QMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQM 91 (537)
T ss_pred hHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHH
Confidence 478999999999 5889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhcccc--CCCCCHHHHHHHHHHHhhccc
Q 012157 85 QDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMP--IDTNDRATMLGLVKSCIGTKF 162 (470)
Q Consensus 85 ~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~--v~~~~~~~l~~v~~t~l~sk~ 162 (470)
|+++.||||++||+|+++||++|.++|+.|++|.+|++||..|.+.+++.|+++-+. .|..|.+ .++++++.+|.
T Consensus 92 q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq 168 (537)
T KOG0362|consen 92 QEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQ 168 (537)
T ss_pred HHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999987543 2334554 68899998886
Q ss_pred ccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEe
Q 012157 163 TSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLD 242 (470)
Q Consensus 163 ~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~ 242 (470)
. ...+++++++++|++.+.+ .+. |+.+ +|+|+++.|+++++|+++.|++|++.... .++.-+..||++++
T Consensus 169 ~-~~ed~l~~lVa~ac~si~p---~~~--Fnvd-nIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG---~v~~ak~arvAvf~ 238 (537)
T KOG0362|consen 169 Y-GNEDFLTKLVAKACVSILP---LMS--FNVD-NIRVCKILGGGLEDSCVVCGMVFKRDPEG---EVKSAKDARVAVFA 238 (537)
T ss_pred c-chHHHHHHHHHHHHHhhcc---ccc--cccc-ceEEEEEecCCcccceeeEEEEeccccCC---cccccccceeEEEe
Confidence 4 4579999999999999986 332 6665 69999999999999999999999998875 34778899999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHH
Q 012157 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNR 322 (470)
Q Consensus 243 ~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ 322 (470)
||++...++++.++.+++++++..|.+.|+..++..++.|...|+++|++.+.+++.+++||++.+|++++--++.||.|
T Consensus 239 cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrr 318 (537)
T KOG0362|consen 239 CPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRR 318 (537)
T ss_pred cCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEe-cCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHH
Q 012157 323 IAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVD-CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 401 (470)
Q Consensus 323 ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~-~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~ 401 (470)
+|+..||++++++..+.+..+|+ |+++...++|+..++.|.. +...+..|++|||++...+|+.||++.|++++.+..
T Consensus 319 lcrtvGA~~l~rl~~P~~~~lG~-~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l 397 (537)
T KOG0362|consen 319 LCRTVGATALPRLFPPAPEELGY-CDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKAL 397 (537)
T ss_pred HHHHcCCccchhccCCCCccccc-cceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhh
Confidence 99999999999999999999999 9999999999998887764 456789999999999999999999999999999999
Q ss_pred hcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 402 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 402 ~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+++++++||+|++|++|+..|.+++...++.+|+++++||+||+.+|++|++|||+++.+++++|.+
T Consensus 398 ~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~ 464 (537)
T KOG0362|consen 398 CSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYA 464 (537)
T ss_pred ccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865
No 35
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.5e-78 Score=630.16 Aligned_cols=406 Identities=21% Similarity=0.321 Sum_probs=369.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChh----HHHHHHHHhhhccc
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPA----AKSMIELSRTQDEE 88 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~----a~ll~~~~~~~~~~ 88 (470)
...+|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++++++||+ ++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e 84 (544)
T PRK12850 5 EIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDL 84 (544)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcch
Confidence 35678999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHH
Q 012157 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (470)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~ 168 (470)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++.|++ +.+.|.++++++++ .++
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~~------~~~ 156 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--SSKEIAQVATISAN------GDE 156 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcC------CHH
Confidence 9999999999999999999999999999999999999999999999999999986 67889999998843 479
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCC------CCcceecCCeEEEEe
Q 012157 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (470)
Q Consensus 169 ~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~------~~~~~~~~~kIll~~ 242 (470)
.+++++++|+..++. ++ .++++ ..+..| .++++++|++|++++.++. .|++.++||+|+++|
T Consensus 157 ~l~~lv~eAv~~vg~---~g--~i~v~----~~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 224 (544)
T PRK12850 157 SIGEMIAEAMDKVGK---EG--VITVE----EAKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHE 224 (544)
T ss_pred HHHHHHHHHHHHhcc---cC--ceeeE----EccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEe
Confidence 999999999999974 33 23322 222233 6899999999999999872 258999999999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCC------eeeec--
Q 012157 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV------SAIRR-- 314 (470)
Q Consensus 243 ~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~vv~~-- 314 (470)
+.++ +.++ +.++++.+.+.|++|||++++|++.++++|..++| +++++
T Consensus 225 ~~i~-------------~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~ 280 (544)
T PRK12850 225 KKIS-------------NLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPG 280 (544)
T ss_pred cccC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCC
Confidence 9742 3222 56789999999999999999999999999999999 88877
Q ss_pred ---CCHhHHHHHHHHhCCeecc-----CCCCCCCCccCCccceEEEEEECCeEEEEEEecCCC-----------------
Q 012157 315 ---LRKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP----------------- 369 (470)
Q Consensus 315 ---v~~~~L~~ia~~tGa~i~s-----~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~----------------- 369 (470)
+++++|+|||.+|||++++ ++++++++++|+ |+.+++.+ ++|+++++|.++
T Consensus 281 ~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~ 356 (544)
T PRK12850 281 FGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR-AKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEET 356 (544)
T ss_pred cCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC-CcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999 788999899999 99999876 788999887653
Q ss_pred ------------------CeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCC
Q 012157 370 ------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (470)
Q Consensus 370 ------------------~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~ 431 (470)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++ +..++
T Consensus 357 ~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~ 434 (544)
T PRK12850 357 TSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANA 434 (544)
T ss_pred ccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCCh
Confidence 489999999999999999999999999999999997 9999999999999999988 67788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 435 ~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~ 471 (544)
T PRK12850 435 DETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAE 471 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999986
No 36
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.7e-77 Score=626.01 Aligned_cols=404 Identities=19% Similarity=0.289 Sum_probs=368.6
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccc----cChhHHHHHHHHhhhcccc
Q 012157 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDV----AHPAAKSMIELSRTQDEEV 89 (470)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~----~hP~a~ll~~~~~~~~~~~ 89 (470)
..+|.+++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||++++++ +||+++|+++++++|++++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~ 85 (545)
T PRK12852 6 VKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLA 85 (545)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCcee
Confidence 567889999999999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHHH
Q 012157 90 GDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDL 169 (470)
Q Consensus 90 GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~ 169 (470)
||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ +.+++.++++++.+ .++.
T Consensus 86 GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--~~~~l~~va~~s~~------~~~~ 157 (545)
T PRK12852 86 GDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVA--SSAEIAQVGTISAN------GDAA 157 (545)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHhhhcC------ChHH
Confidence 999999999999999999999999999999999999999999999999999996 35669999988753 3789
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCc-CCcceeeeEEEecccCCCC------CCcceecCCeEEEEe
Q 012157 170 IADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (470)
Q Consensus 170 l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~-~~s~li~Giv~~~~~~~~~------~~~~~~~~~kIll~~ 242 (470)
+++++++|+..++. ++. |.+. .|+.. .++++++|+.|++++.++. .|+..++||+|++++
T Consensus 158 l~~li~eA~~~vg~---~g~--------i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d 224 (545)
T PRK12852 158 IGKMIAQAMQKVGN---EGV--------ITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHE 224 (545)
T ss_pred HHHHHHHHHHHhcc---CCc--------eeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEec
Confidence 99999999999975 332 4443 37765 6999999999999999873 488999999999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHc------CCeeeecCC
Q 012157 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRLR 316 (470)
Q Consensus 243 ~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~------~I~vv~~v~ 316 (470)
+.+ ++.+ .+.++++.+.+.|++|||++++|++.++++|..| +|+++++.+
T Consensus 225 ~~i-------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~ 280 (545)
T PRK12852 225 KKL-------------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPG 280 (545)
T ss_pred Ccc-------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCC
Confidence 864 3333 3557889999999999999999999999999886 799998655
Q ss_pred -----HhHHHHHHHHhCCeecc-----CCCCCCCCccCCccceEEEEEECCeEEEEEEecCC------------------
Q 012157 317 -----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD------------------ 368 (470)
Q Consensus 317 -----~~~L~~ia~~tGa~i~s-----~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~------------------ 368 (470)
+++|+|||.+|||++++ ++++++++++|+ |+.+++.+ ++++++.++..
T Consensus 281 ~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 356 (545)
T PRK12852 281 FGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGR-AKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEET 356 (545)
T ss_pred cccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCC-CcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999 689999899999 99999887 68888887765
Q ss_pred -----------------CCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCC
Q 012157 369 -----------------PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (470)
Q Consensus 369 -----------------~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~ 431 (470)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++++|++++.. ++
T Consensus 357 ~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~ 434 (545)
T PRK12852 357 TSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NA 434 (545)
T ss_pred ccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-Cc
Confidence 3789999999999999999999999999999999998 9999999999999999998876 78
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
.+|+++++|++||+.||++|++|||+|+.+++++|++
T Consensus 435 ~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~ 471 (545)
T PRK12852 435 DVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILE 471 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 8999999999999999999999999999999999986
No 37
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.7e-76 Score=617.42 Aligned_cols=408 Identities=23% Similarity=0.315 Sum_probs=363.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhH----HHHHHHHhhhccc
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAA----KSMIELSRTQDEE 88 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a----~ll~~~~~~~~~~ 88 (470)
...+|.++|...++||..++++|++||||+||+|||+++.|+++|||||+||+++++++||++ +|+++++++|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 356788999999999999999999999999999999999999999999999999999999999 5888899999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHH
Q 012157 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (470)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~ 168 (470)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ |.+.|.+++++++ ++++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d~~~L~~VA~ts~------~~~~ 155 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--DIQAITQVASISA------GNDE 155 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHhc------cChH
Confidence 9999999999999999999999999999999999999999999999999999996 6788999999884 4789
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCC------CCcceecCCeEEEEe
Q 012157 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (470)
Q Consensus 169 ~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~------~~~~~~~~~kIll~~ 242 (470)
.+++++++|+..++. ++. |.+. ..++...++++++|+.|+++|.+++ .|+.+++||+|++++
T Consensus 156 ~l~~lv~eAv~~vg~---~g~--------i~~~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d 223 (529)
T CHL00093 156 EVGSMIADAIEKVGR---EGV--------ISLE-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTD 223 (529)
T ss_pred HHHHHHHHHHHHhcc---CCc--------eeec-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhc
Confidence 999999999999974 332 3332 1223456789999999999999872 233469999999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHH--HH----cCCeeeecC-
Q 012157 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYL--SK----AGVSAIRRL- 315 (470)
Q Consensus 243 ~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l--~~----~~I~vv~~v- 315 (470)
++|++.+ ..+.++++.+.+.|++++|++++|++.++++| ++ .+|++++++
T Consensus 224 ~~le~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~ 280 (529)
T CHL00093 224 KKITLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPG 280 (529)
T ss_pred CCCCchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCC
Confidence 9998531 12568889999999999999999999888766 66 489999988
Q ss_pred ----CHhHHHHHHHHhCCeecc-----CCCCCCCCccCCccceEEEEEECCeEEEEEEe---------cCC---------
Q 012157 316 ----RKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVD---------CKD--------- 368 (470)
Q Consensus 316 ----~~~~L~~ia~~tGa~i~s-----~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~---------~~~--------- 368 (470)
++++|+|||.+|||++++ +++++++.++|+ |+.+++.+ ++++++++ |..
T Consensus 281 ~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 356 (529)
T CHL00093 281 FGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQ-ARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIAD 356 (529)
T ss_pred CCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCc-ceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcC
Confidence 458899999999999999 799999999999 99999875 67888873 221
Q ss_pred ----------------CCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhc-CCCC
Q 012157 369 ----------------PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS-SIEG 431 (470)
Q Consensus 369 ----------------~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~-~~~~ 431 (470)
+..+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|++++. ..++
T Consensus 357 ~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g 435 (529)
T CHL00093 357 SSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKE 435 (529)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCCh
Confidence 1478899999999999999999999999999999998 999999999999999999887 7889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 436 ~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~ 472 (529)
T CHL00093 436 DELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQE 472 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHc
Confidence 9999999999999999999999999999999999975
No 38
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.8e-75 Score=611.27 Aligned_cols=405 Identities=22% Similarity=0.296 Sum_probs=365.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhcccc----ChhHHHHHHHHhhhccc
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEE 88 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~----hP~a~ll~~~~~~~~~~ 88 (470)
...+|.+++..|++|+..++++|++||||+||+|||+++.|+++|||||+||+++++++ ||+++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e 84 (546)
T PRK14104 5 EVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADA 84 (546)
T ss_pred eecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhccc
Confidence 45788999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHH
Q 012157 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (470)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~ 168 (470)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++. .+.+.++++++.+ +++
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~--~~~l~~va~~s~~------~d~ 156 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTS--NDEIAQVGTISAN------GDA 156 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCC--HHHHHHHHHHHhc------Cch
Confidence 99999999999999999999999999999999999999999999999999999973 5678999998743 458
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCc-CCcceeeeEEEecccCCCC------CCcceecCCeEEEE
Q 012157 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (470)
Q Consensus 169 ~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~-~~s~li~Giv~~~~~~~~~------~~~~~~~~~kIll~ 241 (470)
.+++++++|+..++. +|. |.+.. ++.. .++++++|++|++++.+|. .++.++++|+|+++
T Consensus 157 ~i~~lv~~Av~~vg~---~g~--------i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~ 223 (546)
T PRK14104 157 EIGKFLADAMKKVGN---EGV--------ITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILIN 223 (546)
T ss_pred HHHHHHHHHHHHhcc---CCc--------eeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEe
Confidence 899999999999974 332 54543 3445 5899999999999999871 33778999999999
Q ss_pred ecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHH------cCCeeeecC
Q 012157 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSK------AGVSAIRRL 315 (470)
Q Consensus 242 ~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~------~~I~vv~~v 315 (470)
+.. ++++++ +.++++.+.+.|++|||++++|++.++++|.. .+|+++++.
T Consensus 224 d~~-------------i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~ 279 (546)
T PRK14104 224 EKK-------------LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAP 279 (546)
T ss_pred hhh-------------hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEecc
Confidence 855 334444 45789999999999999999999999999985 467888666
Q ss_pred C-----HhHHHHHHHHhCCeeccC-----CCCCCCCccCCccceEEEEEECCeEEEEEEecCCC----------------
Q 012157 316 R-----KTDNNRIAKACGAVIVNR-----PDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP---------------- 369 (470)
Q Consensus 316 ~-----~~~L~~ia~~tGa~i~s~-----~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~---------------- 369 (470)
+ +++|+|||.+|||+++++ ++++++.++|+ |..+++ ++++++++.+|..+
T Consensus 280 ~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~-a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~ 355 (546)
T PRK14104 280 GFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGR-AKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEE 355 (546)
T ss_pred CCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCc-eeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 5 899999999999999999 88999899999 999885 66889999988764
Q ss_pred -------------------CeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCC
Q 012157 370 -------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIE 430 (470)
Q Consensus 370 -------------------~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~ 430 (470)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++. ..+
T Consensus 356 ~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~ 433 (546)
T PRK14104 356 TTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKN 433 (546)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCC
Confidence 899999999999999999999999999999999998 99999999999999999874 357
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 431 GIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 431 ~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+++++++++|++||+.||++|++|||+|+.+++++|++
T Consensus 434 ~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~ 471 (546)
T PRK14104 434 DDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILE 471 (546)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHh
Confidence 88999999999999999999999999999999999985
No 39
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=8.9e-75 Score=609.08 Aligned_cols=408 Identities=20% Similarity=0.312 Sum_probs=365.0
Q ss_pred ccccch--hHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccCh----hHHHHHHHHhhhc
Q 012157 13 KRESGT--KVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQD 86 (470)
Q Consensus 13 ~~~~g~--~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~ 86 (470)
...||. ++|...+++|+.++++|++||||+||+|||+++.|+++|||||+||+++|+++|| +++|+++++++|+
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 456777 7999999999999999999999999999999999999999999999999999999 5999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccch
Q 012157 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF 166 (470)
Q Consensus 87 ~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~ 166 (470)
+++||||||+++|+++|++++.++++.|+||..|++||+.|.+.+++.|++++.|++ + +.|.++++++. ++
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-~~L~~vA~tS~------~~ 208 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-SELADVAAVSA------GN 208 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-HHHHHHHHHhc------cC
Confidence 999999999999999999999999999999999999999999999999999999985 3 56999999985 45
Q ss_pred HHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCc-ceeeeEEEecccCCCC------CCcceecCCeEE
Q 012157 167 GDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDS-RVLKGVMFNKDVVAPG------KMRRKIVNPRII 239 (470)
Q Consensus 167 ~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s-~li~Giv~~~~~~~~~------~~~~~~~~~kIl 239 (470)
++.|++++++|+.+++. +|. |.+ .+|++.+++ ++++|++|+++|.+|+ +|+++++||+|+
T Consensus 209 ~~~i~~liaeAv~~Vg~---~g~--------i~v--~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Il 275 (600)
T PLN03167 209 NYEVGNMIAEAMSKVGR---KGV--------VTL--EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLL 275 (600)
T ss_pred cHHHHHHHHHHHHHhcc---CCc--------EEe--ccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEE
Confidence 68999999999999974 332 333 368888887 8999999999999873 689999999999
Q ss_pred EEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHH------HcCCeeee
Q 012157 240 LLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLS------KAGVSAIR 313 (470)
Q Consensus 240 l~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~------~~~I~vv~ 313 (470)
++++. +++.+++. ++++.+.+.|+++||++++|++.++++|. ..+|++++
T Consensus 276 l~d~~-------------i~~~~~l~-----------~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk 331 (600)
T PLN03167 276 LVDKK-------------ITNARDLI-----------GILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALK 331 (600)
T ss_pred EEccc-------------cCCHHHHH-----------HHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEE
Confidence 99986 45666665 45567788999999999999999999999 66799998
Q ss_pred cCC-----HhHHHHHHHHhCCeecc-----CCCCCCCCccCCccceEEEEE-----ECC--------eEEEEEEecC---
Q 012157 314 RLR-----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKK-----IGD--------EFFAFIVDCK--- 367 (470)
Q Consensus 314 ~v~-----~~~L~~ia~~tGa~i~s-----~~~~l~~~~lG~~~~~v~~~~-----~g~--------~~~~~~~~~~--- 367 (470)
+.+ +++|+|||.+|||++++ ++++++++++|+ |+.+++.+ +|+ +++.+|+++.
T Consensus 332 ~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~-a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~ 410 (600)
T PLN03167 332 APGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGT-AAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAA 410 (600)
T ss_pred cccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCce-eeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhcc
Confidence 885 88999999999999999 688888899999 99999987 665 3666666543
Q ss_pred ---------------CCCeEEEE-eccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCC
Q 012157 368 ---------------DPKACTVL-LRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (470)
Q Consensus 368 ---------------~~~~~TIl-l~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~ 431 (470)
..+.+|++ |||+|+.+++|+||+++||++++++++++| +|||||++|++++.+|++++...++
T Consensus 411 ~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~ 489 (600)
T PLN03167 411 EQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLEN 489 (600)
T ss_pred CCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCC
Confidence 01245555 999999999999999999999999999999 9999999999999999998887778
Q ss_pred hhhH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 012157 432 IEKW-PYEAAAIAFEAIPRTLAQNCGINVIRTMTALQG 468 (470)
Q Consensus 432 ~~~~-~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~ 468 (470)
+++. +++++++||+.||++|++|||+|+.+++++|++
T Consensus 490 ~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~ 527 (600)
T PLN03167 490 DEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLS 527 (600)
T ss_pred hhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHh
Confidence 7775 599999999999999999999999999999973
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-74 Score=549.98 Aligned_cols=453 Identities=28% Similarity=0.533 Sum_probs=428.5
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHHHHHhhhc
Q 012157 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQD 86 (470)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~ 86 (470)
.+++..+..+-..+...|+.++..+.+++++.+||.|..||++++.|++.+|+||.+.+..|+++||.+-++..++.+|+
T Consensus 5 ~lnpkAEv~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqd 84 (520)
T KOG0359|consen 5 LLNPKAEVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQD 84 (520)
T ss_pred CCCcHHHHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhh
Confidence 34444455556778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccch
Q 012157 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF 166 (470)
Q Consensus 87 ~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~ 166 (470)
+..|||||++|+|+++++++|...+..|+||..|++||+.|.+.++++|+..+.+++ ++.|..+++|+|.+|+...-
T Consensus 85 d~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~---~~~L~~va~tsl~Tkv~~~l 161 (520)
T KOG0359|consen 85 DITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD---RETLKDVARTSLRTKVHAEL 161 (520)
T ss_pred cccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh---HHHHHHHHHHhhcCcccHHH
Confidence 999999999999999999999999999999999999999999999999998787774 88999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEecccc
Q 012157 167 GDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246 (470)
Q Consensus 167 ~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~Le 246 (470)
.+.+++++++|+..+.. ...++|+. ++.|.++...+..|+.+++|++++++..|| .||+..+|+.|++.|-+||
T Consensus 162 a~~lt~~vv~aVl~i~~----~~~~idl~-mveim~mq~~s~~dT~~v~glvLdhg~rHp-dmp~~~e~a~iL~~NvSLE 235 (520)
T KOG0359|consen 162 ADVLTPIVVDSVLCIRR----QEEPIDLF-MVEIMEMQHKSLHDTSLVQGLVLDHGARHP-DMPRRVEDAYILICNVSLE 235 (520)
T ss_pred HhHhHHHHHhhheeecc----CCCCcchh-HHHhhhhccCchhhhHHhhhhhccCCCCCc-ccccchhceEEEEeecccc
Confidence 99999999999998862 23467887 699999999999999999999999999999 9999999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCc----EEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHH
Q 012157 247 YKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPD----LVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNR 322 (470)
Q Consensus 247 ~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~----lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ 322 (470)
++|++.+..+-+++.++.+.+...|++++.+.+++|++++-. +||.+++|||..++.|.++||+++++.++..|+|
T Consensus 236 YEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmER 315 (520)
T KOG0359|consen 236 YEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMER 315 (520)
T ss_pred ccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999987632 5678999999999999999999999999999999
Q ss_pred HHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHh
Q 012157 323 IAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNII 402 (470)
Q Consensus 323 ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~ 402 (470)
+..+||+..+++++|++++.+|+ |+.+++..+|+++|+|+++|++++.|||+++||+.+.+.+.|++++|+++++++++
T Consensus 316 L~lacGG~a~nsvddLtp~~LG~-aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl 394 (520)
T KOG0359|consen 316 LVLACGGEAVNSVDDLTPDYLGY-AGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTL 394 (520)
T ss_pred HHHhhccceecccccCChhhccc-cceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHh
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 012157 403 KNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469 (470)
Q Consensus 403 ~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~ 469 (470)
++..++||+|++|..++++|+...++..++.++++++|++||..+|++|++|+|+|+.+.+.+|..+
T Consensus 395 ~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e 461 (520)
T KOG0359|consen 395 EDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKE 461 (520)
T ss_pred hhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHh
Confidence 9999999999999999999998888899999999999999999999999999999999999998653
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-61 Score=444.31 Aligned_cols=327 Identities=39% Similarity=0.633 Sum_probs=309.4
Q ss_pred CCCcccccccc--ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccChhHHHHH
Q 012157 2 HSPVLVLKDSL--KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMI 79 (470)
Q Consensus 2 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~ 79 (470)
++|..++++.. .+.+|.++.++|+.+..++++++++|+||.|++|+++.+.|++.+|||| .|++++++.
T Consensus 9 ~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv 79 (400)
T KOG0357|consen 9 GRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIV 79 (400)
T ss_pred cCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHH
Confidence 67877777664 5678999999999999999999999999999999999999999999999 789999999
Q ss_pred HHHhhhcccccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhh
Q 012157 80 ELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIG 159 (470)
Q Consensus 80 ~~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~ 159 (470)
..+..|+.+.|||||.+++|++++++++.+++.+|+||..|.+||..+...+.+.|++++-+++
T Consensus 80 ~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------- 143 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------- 143 (400)
T ss_pred HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------
Confidence 9999999999999999999999999999999999999999999999998888777765544432
Q ss_pred cccccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEE
Q 012157 160 TKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRII 239 (470)
Q Consensus 160 sk~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIl 239 (470)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhH
Q 012157 240 LLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (470)
Q Consensus 240 l~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~ 319 (470)
+..+++++++.|+++++|+|++|+++.++|.+|+..+++||.-.+
T Consensus 144 -----------------------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpE 188 (400)
T KOG0357|consen 144 -----------------------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPE 188 (400)
T ss_pred -----------------------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcc
Confidence 235778999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEEC--CeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Q 012157 320 NNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG--DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 397 (470)
Q Consensus 320 L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g--~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~ 397 (470)
++-||.+||++|++++++++++.||+ |+.|++..+| .++++.+++|++++.+||.+||++.-+++|.||++|||||+
T Consensus 189 iEliAiaT~grIVprF~eL~~~kLG~-aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCv 267 (400)
T KOG0357|consen 189 IELIAIATGGRIVPRFSELTAEKLGF-AGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCV 267 (400)
T ss_pred eEEEEeecCCeeeccHhhhCHhhccc-cceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHH
Confidence 99999999999999999999999999 9999999998 57999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 012157 398 ARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK 469 (470)
Q Consensus 398 ~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~ 469 (470)
+|+++++.++|+|||++|+.||-.+.+-+.++++.+|+++++||+||++||..|++|+|++|++.+++++++
T Consensus 268 irnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~ 339 (400)
T KOG0357|consen 268 IRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKAR 339 (400)
T ss_pred HHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-49 Score=390.19 Aligned_cols=405 Identities=23% Similarity=0.311 Sum_probs=353.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhcCCCCccceeeecCCCCEEEecChHHHHhhccccCh----hHHHHHHHHhhhccc
Q 012157 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (470)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (470)
...||.++|...++++..||++|..|+||+||+++|...+|.|.|||||.|+.+++.+.++ .|+++++.+.+.++.
T Consensus 18 ~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~ 97 (550)
T KOG0356|consen 18 DIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEE 97 (550)
T ss_pred ccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCc
Confidence 4689999999999999999999999999999999999999999999999999999998765 799999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHhhcccccchHH
Q 012157 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (470)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~~~~I~~~~~~a~~~~~~~l~~~~~~v~~~~~~~l~~v~~t~l~sk~~~~~~~ 168 (470)
.||||||+.+|++++.+++.+-+.+|.+|..|.+|...+.+.+.+.|+++++|++. ++++.+++..+ ++.+.
T Consensus 98 agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt--~eeIaqVAtiS------AngD~ 169 (550)
T KOG0356|consen 98 AGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTT--PEEIAQVATIS------ANGDK 169 (550)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHhhh------cCCcH
Confidence 99999999999999999999999999999999999999999999999999999985 78899999866 67889
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcC-CcceeeeEEEecccCCCC------CCcceecCCeEEEE
Q 012157 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLE-DSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (470)
Q Consensus 169 ~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~-~s~li~Giv~~~~~~~~~------~~~~~~~~~kIll~ 241 (470)
.+.+++.+|+.+++. +|. |.| ..|.+.. +-++++|+-|+++|.+|. .+..++++|++++.
T Consensus 170 ~ig~li~~a~~kvG~---~GV--------Itv--~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~ 236 (550)
T KOG0356|consen 170 EIGNLISDAMKKVGR---KGV--------ITV--KDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLS 236 (550)
T ss_pred HHHHHHHHHHHHhCc---CCe--------EEe--ecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhh
Confidence 999999999999986 553 666 3577764 578999999999999873 24567899999998
Q ss_pred ecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCC-----------e
Q 012157 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV-----------S 310 (470)
Q Consensus 242 ~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I-----------~ 310 (470)
+.++ ++.+++. +.++.-.+...++++++.+++.++|..|.-|+. .
T Consensus 237 ~kki-------------~~v~~iv-----------p~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKap 292 (550)
T KOG0356|consen 237 EKKI-------------SSVQSIV-----------PALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAP 292 (550)
T ss_pred hhhh-------------hHHHHHh-----------HHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecC
Confidence 8774 4555543 666776777889999999999999999998843 2
Q ss_pred eeecCCHhHHHHHHHHhCCeeccC------CCCCCCCccCCccceEEEEEECCeEEEEEEec------------------
Q 012157 311 AIRRLRKTDNNRIAKACGAVIVNR------PDELQESDVGTGAGLFEVKKIGDEFFAFIVDC------------------ 366 (470)
Q Consensus 311 vv~~v~~~~L~~ia~~tGa~i~s~------~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~------------------ 366 (470)
.|++-+++.+.+++.+||+.++.+ ++..+..++|. |..+.+.+ +....+.+.
T Consensus 293 gfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~-~~evvvtk---d~t~ll~g~~~~~~v~~rIeqik~~~e 368 (550)
T KOG0356|consen 293 GFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGE-VGEVVVTK---DDTMLLKGKGNKAQVEGRIEQIKEMIE 368 (550)
T ss_pred CCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCc-ceeEEEec---CcceeeCCCCCHHHHHHHHHHHHHHHH
Confidence 367778899999999999998873 45667788998 98887764 222233221
Q ss_pred -----------------CCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCC
Q 012157 367 -----------------KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSI 429 (470)
Q Consensus 367 -----------------~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~ 429 (470)
-..++++|.++|.++.+++|++.+++||++++++++++| +|||||++.++|+..|.+.....
T Consensus 369 ~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~ 447 (550)
T KOG0356|consen 369 ETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATN 447 (550)
T ss_pred hhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhccccc
Confidence 136889999999999999999999999999999999999 99999999999999999877644
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHh
Q 012157 430 EGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQ 467 (470)
Q Consensus 430 ~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~ 467 (470)
...++.+++++.+||..|.+++++|||.|+..++.+++
T Consensus 448 ~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~ 485 (550)
T KOG0356|consen 448 NFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVL 485 (550)
T ss_pred chHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHH
Confidence 45678889999999999999999999999999999986
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.5e-41 Score=324.56 Aligned_cols=234 Identities=32% Similarity=0.583 Sum_probs=215.8
Q ss_pred cchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEec
Q 012157 164 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243 (470)
Q Consensus 164 ~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~ 243 (470)
+.|.++|++++++|+..+..+..++ ..+|+.++|+|++++|++++||++++|+++++++.++ .||+.++||||+++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~-~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~-~m~~~i~n~kIlll~~ 94 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAG-DDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHK-RMPSKIKNPRILLLQG 94 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccC-CccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCc-cCCcccCCCcEEEEee
Confidence 4689999999999999986432111 3577765799999999999999999999999999998 8999999999999999
Q ss_pred ccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHH
Q 012157 244 PLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRI 323 (470)
Q Consensus 244 ~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~i 323 (470)
+|++++++. ++++++++.+.|++++++++++|.+.|+|||+++|+|++.+++||.++||++++++++++|+||
T Consensus 95 ~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rI 167 (261)
T cd03334 95 PLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERI 167 (261)
T ss_pred eeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHH
Confidence 999988763 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccCC-CCCCCCccCCccceEEEEEECC-----eEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Q 012157 324 AKACGAVIVNRP-DELQESDVGTGAGLFEVKKIGD-----EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 397 (470)
Q Consensus 324 a~~tGa~i~s~~-~~l~~~~lG~~~~~v~~~~~g~-----~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~ 397 (470)
|++|||++++++ ++++++.+|+ |+.|+++++|+ ++|++|++|+.++.+||+|||+|++.++|.||+++||+++
T Consensus 168 a~~tGa~ii~~i~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v 246 (261)
T cd03334 168 SRCTGADIISSMDDLLTSPKLGT-CESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFA 246 (261)
T ss_pred HHHhCCEEecChhhhcCcccCcC-cceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999994 5889999999 99999999996 6999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeE
Q 012157 398 ARNIIKNPKL 407 (470)
Q Consensus 398 ~~~~~~~~~v 407 (470)
++++..++.+
T Consensus 247 ~~~~~le~~~ 256 (261)
T cd03334 247 AYHLKLETSF 256 (261)
T ss_pred HHHHHHhHHH
Confidence 9999887744
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=9.3e-37 Score=284.16 Aligned_cols=208 Identities=46% Similarity=0.765 Sum_probs=195.4
Q ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCC
Q 012157 148 ATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG 227 (470)
Q Consensus 148 ~~l~~v~~t~l~sk~~~~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~ 227 (470)
+.|.++++|++++|+ +.|.+.+++++++|+..++.+. + .++.. +|+|++++|+++++|++++|++|++++.++
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~--~--~~~~~-~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~- 74 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN--R--MDDLG-VIKVEKIPGGSLEDSELVVGVVFDKGYASP- 74 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC--C--CCchH-HEEEEEecCcChhhceeEeeEEEeccccCC-
Confidence 468899999999999 9999999999999999997532 1 23443 699999999999999999999999999998
Q ss_pred CCcceecCCeEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHc
Q 012157 228 KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA 307 (470)
Q Consensus 228 ~~~~~~~~~kIll~~~~Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~ 307 (470)
.||++++||+|++++++|++ +|+++++|++.++++|.++
T Consensus 75 ~m~~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~ 113 (209)
T cd03333 75 YMPKRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKA 113 (209)
T ss_pred CCCeEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHC
Confidence 89999999999999999985 9999999999999999999
Q ss_pred CCeeeecCCHhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEecCCCCeEEEEeccCCHHHHHHH
Q 012157 308 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEV 387 (470)
Q Consensus 308 ~I~vv~~v~~~~L~~ia~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~ 387 (470)
||++++++++++|+|||++|||++++++++++++.+|+ |+.+++.++|+++|++|++|..++.+||+|||||+.+++|.
T Consensus 114 ~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~-~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~ 192 (209)
T cd03333 114 GIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGT-AELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEV 192 (209)
T ss_pred CCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhcee-eeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 012157 388 ERNLQDAMSVARNIIKN 404 (470)
Q Consensus 388 ~~~l~dal~~~~~~~~~ 404 (470)
||+++||++++++++++
T Consensus 193 kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 193 KRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.90 E-value=3.4e-23 Score=224.48 Aligned_cols=238 Identities=32% Similarity=0.534 Sum_probs=210.8
Q ss_pred chHHHHHHHHHHHHhhcccccCCCccccCcccceeEEEecCCCcCCcceeeeEEEecccCCCCCCcceecCCeEEEEecc
Q 012157 165 QFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP 244 (470)
Q Consensus 165 ~~~~~l~~l~~~a~~~~~~~~~~g~~~~~~~~~I~i~~~~G~~~~~s~li~Giv~~~~~~~~~~~~~~~~~~kIll~~~~ 244 (470)
.|.+.+..++.+|...+.++...+ ...|+..+++|++++||...+|+++.|+++.+..+++ .|..++++|+|+++.++
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~-~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k-~M~~~~e~prilll~g~ 409 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSG-GLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHK-RMATKYENPRILLLGGP 409 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccC-CCcCcccceEEEEecCCCcccceeeeEEEeecchhhh-hhhhhccCCceEEEecc
Confidence 588999999999999998866433 3467777999999999999999999999999999999 99999999999999999
Q ss_pred cccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHH
Q 012157 245 LEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIA 324 (470)
Q Consensus 245 Le~~~~~~~~~~~i~~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia 324 (470)
|++++-..+ ...++.+.++|.++++.++.+|...+++++++.++|+..|+++|...+|.++-++++.-|+||+
T Consensus 410 leyqrisn~-------lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIs 482 (1598)
T KOG0230|consen 410 LEYQRISNQ-------LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERIS 482 (1598)
T ss_pred hhhhhhhcc-------ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHH
Confidence 999754332 2245666777999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccCCCCCCCCccCCccceEEEEEEC-----CeEEEEEEecCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Q 012157 325 KACGAVIVNRPDELQESDVGTGAGLFEVKKIG-----DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVAR 399 (470)
Q Consensus 325 ~~tGa~i~s~~~~l~~~~lG~~~~~v~~~~~g-----~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~l~dal~~~~ 399 (470)
++|||.|++++|.++...+|+ |+.|++.+.- .+.++||++|+....|||+|||....++.+.|+.++-+..++.
T Consensus 483 R~tga~I~~siDslt~~klg~-C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay 561 (1598)
T KOG0230|consen 483 RCTGADIVPSVDSLTSQKLGY-CELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAY 561 (1598)
T ss_pred HHhcCceecchhhhhccccCC-CccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999887654 4678899999999999999999999999999999999998888
Q ss_pred HHhcCCeEEecCC
Q 012157 400 NIIKNPKLVPGGG 412 (470)
Q Consensus 400 ~~~~~~~vv~GGG 412 (470)
++.-+..++.--|
T Consensus 562 ~l~LE~SflaDe~ 574 (1598)
T KOG0230|consen 562 HLALETSFLADEG 574 (1598)
T ss_pred HHHHhhhhhhccC
Confidence 8765544444333
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=70.92 E-value=17 Score=30.39 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHHhCC
Q 012157 278 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGA 329 (470)
Q Consensus 278 ~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tGa 329 (470)
+.+.|++.|+++|++. .+.+.+.+.|...||-++.-.+.+-=+.|-....+
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 5677889999999996 89999999999999999877664444444444444
No 47
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=68.38 E-value=16 Score=28.48 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=31.3
Q ss_pred HHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecC
Q 012157 278 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRL 315 (470)
Q Consensus 278 ~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v 315 (470)
+.+.+...++++|++. .+.+.+...|.++||.++...
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~ 81 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGA 81 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEEST
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcC
Confidence 3445666899999996 799999999999999999873
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=66.27 E-value=15 Score=29.17 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCC
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~ 316 (470)
...+.|...++++|++. .+.+.+.+.|..+||.++....
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 34556667899999996 7999999999999999987765
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=56.06 E-value=33 Score=27.08 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=31.7
Q ss_pred HHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCC
Q 012157 279 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (470)
Q Consensus 279 ~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~ 316 (470)
.+.+...++++|++. .+.+.+...|.++||.++....
T Consensus 54 ~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 54 ARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 345667899999997 6999999999999999987765
No 50
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=55.00 E-value=59 Score=25.32 Aligned_cols=49 Identities=6% Similarity=-0.031 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCcEEEecCCCCHHHHH----HHHHcCCeeeecCCHhHHHHHH
Q 012157 276 ENLCMQILKFKPDLVITEKGLSDLACH----YLSKAGVSAIRRLRKTDNNRIA 324 (470)
Q Consensus 276 ~~~~~~i~~~~~~lIi~~~~i~~~~l~----~l~~~~I~vv~~v~~~~L~~ia 324 (470)
++.++.+.+-.+.+|++++++++.... +|.++||.++.--++.+|-+.+
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 456677777889999999999987654 5677899998888877765544
No 51
>PRK07283 hypothetical protein; Provisional
Probab=53.59 E-value=55 Score=26.16 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHH----HHHHHcCCeeeecCCHhHHHHHHHHhCC
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLAC----HYLSKAGVSAIRRLRKTDNNRIAKACGA 329 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l----~~l~~~~I~vv~~v~~~~L~~ia~~tGa 329 (470)
+..+.+.+-.+.+|+.+.+.++... +.+..++|.++...+.+ .|..++|-
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~---eLG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTL---ELSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHH---HHHHHhCC
Confidence 4556777778999999999999888 56667799998777664 46677774
No 52
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=45.00 E-value=74 Score=24.53 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHH----HHHHcCCeeeecCCHhHHHHHHHHhCCe
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACH----YLSKAGVSAIRRLRKTDNNRIAKACGAV 330 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~----~l~~~~I~vv~~v~~~~L~~ia~~tGa~ 330 (470)
+.++.|.+-.+.+|+++.+.++.... ++..++|.++..-++. .|..++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~---eLG~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMK---KLGKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHHCCC
Confidence 45567777789999999999987654 4577899987766664 466666654
No 53
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=42.79 E-value=95 Score=25.97 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCcEEEecCCCCHH-H----HHHHHHcCCeeeecCCHhHHHHHHHHhCC
Q 012157 276 ENLCMQILKFKPDLVITEKGLSDL-A----CHYLSKAGVSAIRRLRKTDNNRIAKACGA 329 (470)
Q Consensus 276 ~~~~~~i~~~~~~lIi~~~~i~~~-~----l~~l~~~~I~vv~~v~~~~L~~ia~~tGa 329 (470)
++.++.+.+-.+.+|+.+.++++. . ..++.+++|.++..-++++ |..++|-
T Consensus 36 ~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~e---LG~a~Gk 91 (122)
T PRK04175 36 NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKD---LGKAAGL 91 (122)
T ss_pred HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHhCC
Confidence 456667777779999999999773 2 3446778888776666644 4555554
No 54
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=42.46 E-value=95 Score=25.75 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCcEEEecCCCCHH-H----HHHHHHcCCeeeecCCHhHHHHHHHHhCC
Q 012157 276 ENLCMQILKFKPDLVITEKGLSDL-A----CHYLSKAGVSAIRRLRKTDNNRIAKACGA 329 (470)
Q Consensus 276 ~~~~~~i~~~~~~lIi~~~~i~~~-~----l~~l~~~~I~vv~~v~~~~L~~ia~~tGa 329 (470)
++..+.|.+-.+.+|+.+.++++. . .+++.+.+|..+..-++++ |..++|-
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~e---LG~a~Gk 87 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKED---LGAAAGL 87 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 355666777779999999999763 3 4457788998877776655 4555554
No 55
>PRK06683 hypothetical protein; Provisional
Probab=42.23 E-value=1.1e+02 Score=23.66 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHH----HHHcCCeeeecCCHhHHHHHHHHhCCe
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHY----LSKAGVSAIRRLRKTDNNRIAKACGAV 330 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~----l~~~~I~vv~~v~~~~L~~ia~~tGa~ 330 (470)
+.++.|.+-.+.+|+++.+.++...+- +..++|.++..-+. +.|..++|-.
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~---~eLG~A~G~~ 72 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV---RKLGKVAGIQ 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCc
Confidence 455677778899999999999877665 56789999777665 4466777764
No 56
>PRK07714 hypothetical protein; Provisional
Probab=40.67 E-value=1.2e+02 Score=24.26 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHH----HHcCCeeeecCCHhHHHHHHHHhCCe
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYL----SKAGVSAIRRLRKTDNNRIAKACGAV 330 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l----~~~~I~vv~~v~~~~L~~ia~~tGa~ 330 (470)
+..+.+.+-.+.+||.+.+.++....-+ ..++|.++...+++ .|..++|-.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~---eLG~a~Gk~ 79 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQ---QLGHAIGKD 79 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHH---HHHHHhCCC
Confidence 4556777778999999999988766544 56699988776664 456666753
No 57
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=40.21 E-value=90 Score=27.69 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=36.3
Q ss_pred HHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeee-e-cCC-----HhHHHHHHHHhCC
Q 012157 279 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAI-R-RLR-----KTDNNRIAKACGA 329 (470)
Q Consensus 279 ~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv-~-~v~-----~~~L~~ia~~tGa 329 (470)
+|.|.+.+++||+......+...+.|.+.||.++ - ... .+.++.++.++|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 3678889999999876666667788999999543 2 221 2456777777776
No 58
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=38.41 E-value=38 Score=28.51 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCC--CHHHHHHHHHcCCeeeecC
Q 012157 264 WEVLLKMEEEYIENLCMQILKFKPDLVITEKGL--SDLACHYLSKAGVSAIRRL 315 (470)
Q Consensus 264 l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i--~~~~l~~l~~~~I~vv~~v 315 (470)
+.-+.+...+..++.++++.+.+++.||++.+. ++...+.+.++++.+++--
T Consensus 59 ~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 59 SAYLNSLDEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTP 112 (127)
T ss_dssp HHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEES
T ss_pred HHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcC
Confidence 333333334455678889999999988887755 7889999999999988643
No 59
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.72 E-value=97 Score=28.80 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=37.9
Q ss_pred HHHHHhcCCcEEEecCCCCHH-HHHHHHHcCCeeeecC--C----HhHHHHHHHHhCCe
Q 012157 279 CMQILKFKPDLVITEKGLSDL-ACHYLSKAGVSAIRRL--R----KTDNNRIAKACGAV 330 (470)
Q Consensus 279 ~~~i~~~~~~lIi~~~~i~~~-~l~~l~~~~I~vv~~v--~----~~~L~~ia~~tGa~ 330 (470)
+|.|.+.+|+||+.....++. ..+.|.+.++.++-.. . .+.++.|+.++|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 467889999999987655454 4888999999754321 2 35588888888884
No 60
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=37.54 E-value=54 Score=28.59 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCH
Q 012157 380 SKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINV 459 (470)
Q Consensus 380 t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~ 459 (470)
.+-.-.+++.-++.-..-++--.+.|-++|-.= ..+. ....++++...|+++|-+|.+++|+.|
T Consensus 62 ~~m~p~dRK~w~qsE~eRlk~e~e~g~Lipa~e--------V~~~--------~s~~~Kav~q~LetlPD~LERd~gL~p 125 (152)
T PF07278_consen 62 DDMTPKDRKAWWQSENERLKFEKETGQLIPAEE--------VRRE--------MSEMAKAVVQVLETLPDILERDAGLPP 125 (152)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcccCcHHH--------HHHH--------HHHHHHHHHHHHHHhhHHHHhcCCCCH
Confidence 333444566555555555666556665665321 1111 235778899999999999999999998
Q ss_pred HHH
Q 012157 460 IRT 462 (470)
Q Consensus 460 ~~~ 462 (470)
..+
T Consensus 126 ~~v 128 (152)
T PF07278_consen 126 EQV 128 (152)
T ss_pred HHH
Confidence 543
No 61
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=36.23 E-value=1.3e+02 Score=24.61 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCcEEEecCCCCHHHH----HHHHHcCCeeeec-CCHhHHHHHHHHhCCe
Q 012157 276 ENLCMQILKFKPDLVITEKGLSDLAC----HYLSKAGVSAIRR-LRKTDNNRIAKACGAV 330 (470)
Q Consensus 276 ~~~~~~i~~~~~~lIi~~~~i~~~~l----~~l~~~~I~vv~~-v~~~~L~~ia~~tGa~ 330 (470)
++.++.|.+-.+.+|+++.+.++... +++..++|.++.. -.. +.|..++|-+
T Consensus 31 ~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk~ 87 (108)
T PTZ00106 31 KSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGRH 87 (108)
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCCc
Confidence 45567777788999999999988754 4567789998864 455 4567777753
No 62
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=36.20 E-value=89 Score=30.15 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=40.5
Q ss_pred HHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeee-cC-C----HhHHHHHHHHhCCe
Q 012157 279 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIR-RL-R----KTDNNRIAKACGAV 330 (470)
Q Consensus 279 ~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~-~v-~----~~~L~~ia~~tGa~ 330 (470)
+|.|...+|++||.....++...+.|.+.+|.++- .. . .+.++.++.++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 46788999999999888888888999999987642 11 1 35688888888864
No 63
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=36.02 E-value=93 Score=31.31 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=38.6
Q ss_pred HHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecC---C----HhHHHHHHHHhCC
Q 012157 279 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRL---R----KTDNNRIAKACGA 329 (470)
Q Consensus 279 ~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v---~----~~~L~~ia~~tGa 329 (470)
+|+|..++++|||......+...+.|.+.||.++..- + .+.++.+++++|-
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 5788999999999876556667888999999885432 2 2556677788877
No 64
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=34.70 E-value=1.8e+02 Score=22.51 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHH----HHcCCeeeecCCHhHHHHHHHHhCCe
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYL----SKAGVSAIRRLRKTDNNRIAKACGAV 330 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l----~~~~I~vv~~v~~~~L~~ia~~tGa~ 330 (470)
+.++.+.+-.+.+|+++.+.++...+-+ ..++|.+...-++ +.|..++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~---~eLG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTM---KELGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCH---HHHHHHHCCc
Confidence 4456777788999999999998776644 5679999766655 4566777764
No 65
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=33.28 E-value=1.3e+02 Score=24.03 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=27.1
Q ss_pred cCCcEEEecCCCCHHHHHHHHHcCCeeeecCC
Q 012157 285 FKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (470)
Q Consensus 285 ~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~ 316 (470)
.+|++|++. ++.+.+...|.++||.++..-.
T Consensus 64 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 599999995 8999999999999999985544
No 66
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=32.83 E-value=88 Score=24.47 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCcEEEecCCCCHHHH-----HHHHHcCCeeeecCCHhHHHHHHHHhCCe
Q 012157 276 ENLCMQILKFKPDLVITEKGLSDLAC-----HYLSKAGVSAIRRLRKTDNNRIAKACGAV 330 (470)
Q Consensus 276 ~~~~~~i~~~~~~lIi~~~~i~~~~l-----~~l~~~~I~vv~~v~~~~L~~ia~~tGa~ 330 (470)
++..+.+.+-.+.+|+.+.++++... .++.+++|.++..-++. .|..++|-.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~---eLG~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKE---ELGRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHH---HHHHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHH---HHHHHHCCC
Confidence 45666777778999999999977443 46788999998877664 456666664
No 67
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=32.76 E-value=61 Score=30.61 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHh
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 318 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~ 318 (470)
+++.+....|+++|++...-...+.++..+.||..++.++..
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~ 224 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNG 224 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 467888999999999999999999999999999998877654
No 68
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=32.14 E-value=1.7e+02 Score=28.76 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHHhCCeec
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIV 332 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tGa~i~ 332 (470)
+.++.+.+.++++|.+..+.++...+.+.+.|+.++-.+..-+.-+-+.-.|+..+
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 45667778899999998887877889999999998877766555555555677544
No 69
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=30.17 E-value=69 Score=30.74 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHh
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 318 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~ 318 (470)
+++.+....|+++|++...-...+.++..+.||..++.++..
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 467888999999999999999999999999999998877654
No 70
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=30.00 E-value=1.7e+02 Score=28.96 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhHHHHHHHHhCCeec
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIV 332 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tGa~i~ 332 (470)
..++.+.+.+|++|++..+.+.. .+.|.+.||.++..+..-..-+-+.-.|+..+
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 45677788899999998877765 58899999999988776555555666676443
No 71
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=29.72 E-value=2.3e+02 Score=22.63 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHH----HHHHcCCeeeecC-CHhHHHHHHHHhCCe
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACH----YLSKAGVSAIRRL-RKTDNNRIAKACGAV 330 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~----~l~~~~I~vv~~v-~~~~L~~ia~~tGa~ 330 (470)
..++.+.+..+.+|+++.+.++.... ++..++|.++... +++ .|..++|-.
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~---eLG~a~Gk~ 78 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSV---ELGTLCGKP 78 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHH---HHHHHhCCC
Confidence 45567777889999999999876655 4567899987764 554 467777743
No 72
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=29.05 E-value=2.1e+02 Score=23.65 Aligned_cols=43 Identities=7% Similarity=0.091 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCcEEEecCC-----CCHHHHHHHHHcCCeeeecCCH
Q 012157 275 IENLCMQILKFKPDLVITEKG-----LSDLACHYLSKAGVSAIRRLRK 317 (470)
Q Consensus 275 l~~~~~~i~~~~~~lIi~~~~-----i~~~~l~~l~~~~I~vv~~v~~ 317 (470)
+.++++.+++.|+--+.+..+ +++.+.+++++.++.+|.--..
T Consensus 61 ~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 61 LREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred HHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCC
Confidence 457889999999866666544 9999999999999999865443
No 73
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=28.21 E-value=1.7e+02 Score=23.19 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=27.2
Q ss_pred cCCcEEEecCCCCHHHHHHHHHcCCeeeecCC
Q 012157 285 FKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (470)
Q Consensus 285 ~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~ 316 (470)
.++++||+. ++.+.+...|.++||.++....
T Consensus 60 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 589999885 8999999999999999986554
No 74
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=27.54 E-value=2.5e+02 Score=22.71 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHH----HHcCCeeeecCCHhHHHHHHHHhCCe
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYL----SKAGVSAIRRLRKTDNNRIAKACGAV 330 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l----~~~~I~vv~~v~~~~L~~ia~~tGa~ 330 (470)
...+.|.+-.+.+||.+.+.++....-+ ...+|.++...++++ |..++|-.
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e---Lg~a~Gk~ 78 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE---LGNAIGRD 78 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH---HHHHhCCC
Confidence 4556777778999999999988766655 446898888776654 66677754
No 75
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=27.40 E-value=1.5e+02 Score=25.77 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=41.7
Q ss_pred EEEEeccCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHH
Q 012157 372 CTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLK 423 (470)
Q Consensus 372 ~TIll~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~ 423 (470)
=-|+|.|..+...+..-..-......++.+.++|..|.|=+...+.|.+.|.
T Consensus 9 D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 9 DGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 3578888888877776666666777888888898888888888999999987
No 76
>PF12846 AAA_10: AAA-like domain
Probab=26.57 E-value=1.6e+02 Score=28.07 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCCHHH-----HHHHHHcCCeeeecCCHhHHHHHHHHhCCe
Q 012157 274 YIENLCMQILKFKPDLVITEKGLSDLA-----CHYLSKAGVSAIRRLRKTDNNRIAKACGAV 330 (470)
Q Consensus 274 ~l~~~~~~i~~~~~~lIi~~~~i~~~~-----l~~l~~~~I~vv~~v~~~~L~~ia~~tGa~ 330 (470)
.+.+++....+.|+.+++....+++.. -..+...+..++.++...+.+.+++..|-+
T Consensus 241 ~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 241 FLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 355777888899999999999998888 788889999999999998888899888764
No 77
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=26.01 E-value=70 Score=30.21 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=24.8
Q ss_pred EEEEeccCCHHHHHHHHHHHHHHHHHHHH
Q 012157 372 CTVLLRGASKDLLNEVERNLQDAMSVARN 400 (470)
Q Consensus 372 ~TIll~g~t~~~l~e~~~~l~dal~~~~~ 400 (470)
.||+++| ++..+++.++.++|-.++++-
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhhee
Confidence 4999999 889999999999998888754
No 78
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=25.97 E-value=67 Score=33.27 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHHHHHhcC
Q 012157 389 RNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSS 428 (470)
Q Consensus 389 ~~l~dal~~~~~~~~~~~vv~GGG~~E~~l~~~L~~~~~~ 428 (470)
+.+.+|+..++++ +.|-+|.|||+-+-.....|+.+++.
T Consensus 217 ~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 217 RELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 5667788888887 56879999999887777777776654
No 79
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.85 E-value=95 Score=27.52 Aligned_cols=50 Identities=24% Similarity=0.212 Sum_probs=33.7
Q ss_pred HHHHHhcCCcEEEecCCCCH-HHHHHHHHcCCeeeec-C----C--HhHHHHHHHHhC
Q 012157 279 CMQILKFKPDLVITEKGLSD-LACHYLSKAGVSAIRR-L----R--KTDNNRIAKACG 328 (470)
Q Consensus 279 ~~~i~~~~~~lIi~~~~i~~-~~l~~l~~~~I~vv~~-v----~--~~~L~~ia~~tG 328 (470)
+|.|...+|+||+......+ ...+.|.+.||.++.- . . .+.++.+..++|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 47888999999998765555 4888899999865322 1 1 133555555665
No 80
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=25.02 E-value=2.7e+02 Score=22.85 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=34.5
Q ss_pred cCCcEEEecCCCCHHHHHHHHHcCCeeeecCC----HhHHHHHHHHhCC
Q 012157 285 FKPDLVITEKGLSDLACHYLSKAGVSAIRRLR----KTDNNRIAKACGA 329 (470)
Q Consensus 285 ~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~----~~~L~~ia~~tGa 329 (470)
.+|++|+|. +|.+.+...|.+.||.++..-. .+-|+.+....-.
T Consensus 62 ~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~ 109 (119)
T TIGR02663 62 KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKG 109 (119)
T ss_pred CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcC
Confidence 599999995 8999999999999999986322 4666666666544
No 81
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=24.96 E-value=1.8e+02 Score=27.54 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=35.7
Q ss_pred HHHHHhcCCcEEEecCC-CCHHHHHHHHHcCCeeeecC--CH----hHHHHHHHHhCC
Q 012157 279 CMQILKFKPDLVITEKG-LSDLACHYLSKAGVSAIRRL--RK----TDNNRIAKACGA 329 (470)
Q Consensus 279 ~~~i~~~~~~lIi~~~~-i~~~~l~~l~~~~I~vv~~v--~~----~~L~~ia~~tGa 329 (470)
+|.|..+++++|+...+ -.+...+.|.+.||.++.-- +. +.++.++.++|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 36788899999998643 34667788999998775431 21 456677777775
No 82
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=24.91 E-value=2.9e+02 Score=22.88 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCcEEEecCCCCHH-----HHHHHHHcCCeeeecCCHhHHHHH
Q 012157 276 ENLCMQILKFKPDLVITEKGLSDL-----ACHYLSKAGVSAIRRLRKTDNNRI 323 (470)
Q Consensus 276 ~~~~~~i~~~~~~lIi~~~~i~~~-----~l~~l~~~~I~vv~~v~~~~L~~i 323 (470)
+...+.|.+-.+.+|+.+.+++|. +..+|.++||.++.--++.+|=+.
T Consensus 33 ~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a 85 (116)
T COG1358 33 NEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKA 85 (116)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHH
Confidence 455566666678999999999933 344667789999888888665433
No 83
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=24.63 E-value=94 Score=29.85 Aligned_cols=43 Identities=9% Similarity=0.106 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCHhH
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~~~ 319 (470)
+++++.+..|+++|++-......+.+...+.||..+..++...
T Consensus 212 EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~~ 254 (266)
T COG1526 212 EMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGGR 254 (266)
T ss_pred HHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCCc
Confidence 4678889999999999999999999999999999988877543
No 84
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.31 E-value=4.7e+02 Score=24.15 Aligned_cols=55 Identities=7% Similarity=0.059 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeee-cCCHhHHHHHHHHhCCeecc
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIR-RLRKTDNNRIAKACGAVIVN 333 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~-~v~~~~L~~ia~~tGa~i~s 333 (470)
+.++...+.|.+.+++ -+.++.+.+++.++||.++- .....|+..- .-.|+.++.
T Consensus 79 ~~~~~a~~aGA~Fivs-P~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A-~~~Gad~vk 134 (213)
T PRK06552 79 VTARLAILAGAQFIVS-PSFNRETAKICNLYQIPYLPGCMTVTEIVTA-LEAGSEIVK 134 (213)
T ss_pred HHHHHHHHcCCCEEEC-CCCCHHHHHHHHHcCCCEECCcCCHHHHHHH-HHcCCCEEE
Confidence 3456778899999986 59999999999999998874 4556666544 446776554
No 85
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.04 E-value=1.9e+02 Score=23.75 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCcEE-EecCCCCHHHHHHHHHcCCeeeec
Q 012157 277 NLCMQILKFKPDLV-ITEKGLSDLACHYLSKAGVSAIRR 314 (470)
Q Consensus 277 ~~~~~i~~~~~~lI-i~~~~i~~~~l~~l~~~~I~vv~~ 314 (470)
+.++.+.+.|+.-+ +..+..++.+.+++.++|+.+++.
T Consensus 70 ~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 70 EIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 56777888888554 456677889999999999988853
No 86
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=23.59 E-value=4.4e+02 Score=26.69 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCe-eeecCCHhHHHHHHHHhC
Q 012157 260 KEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVS-AIRRLRKTDNNRIAKACG 328 (470)
Q Consensus 260 ~~~~l~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~-vv~~v~~~~L~~ia~~tG 328 (470)
+++++.+| -+-+++++++.+++.|..+++...+-....+..+.+.+.- ++......++....+..|
T Consensus 245 sp~~f~ef---~~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~~~g 311 (378)
T cd03308 245 RPKQFEKF---YWPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKEKLG 311 (378)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHHHhC
Confidence 44555544 4567889999998877777776555555556666665443 222222234444444444
No 87
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=23.53 E-value=86 Score=29.51 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCCH
Q 012157 277 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRK 317 (470)
Q Consensus 277 ~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~~ 317 (470)
+++.+....|+++|++...-...+.++..+.||..++.++.
T Consensus 183 emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 183 EMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 46678888899999998888999999989999988776654
No 88
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=21.06 E-value=2.7e+02 Score=27.63 Aligned_cols=56 Identities=29% Similarity=0.304 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCcEEEecCCCC-HHHHHHHHHcCCeeeecCCHhHHHHHHHHhCCe
Q 012157 275 IENLCMQILKFKPDLVITEKGLS-DLACHYLSKAGVSAIRRLRKTDNNRIAKACGAV 330 (470)
Q Consensus 275 l~~~~~~i~~~~~~lIi~~~~i~-~~~l~~l~~~~I~vv~~v~~~~L~~ia~~tGa~ 330 (470)
+...++.+.+.++++|.+..+.. +...+.+...|+.++..+..-.--+.+.-.|+.
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D 158 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGAD 158 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-S
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCC
Confidence 45667777888999999988877 889999999999999887754444455555653
No 89
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=20.99 E-value=1.8e+02 Score=26.43 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcC----CeeeecCC
Q 012157 274 YIENLCMQILKFKPDLVITEKGLSDLACHYLSKAG----VSAIRRLR 316 (470)
Q Consensus 274 ~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~----I~vv~~v~ 316 (470)
.++++++.+...++++|+++.+.++..-.+|..-. |..+..++
T Consensus 77 ~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~s 123 (220)
T COG4359 77 GFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVS 123 (220)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEee
Confidence 56788999999999999999999999888887654 66655554
No 90
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.79 E-value=3.5e+02 Score=25.03 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=44.5
Q ss_pred HHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeee-ecCCHhHHHHHHHHhCCeeccC
Q 012157 279 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAI-RRLRKTDNNRIAKACGAVIVNR 334 (470)
Q Consensus 279 ~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv-~~v~~~~L~~ia~~tGa~i~s~ 334 (470)
++...+.|.+.+++- +.++.+.+++.+++|..+ +.....|+.. +.-.|+.++--
T Consensus 80 a~~a~~aGA~FivsP-~~~~~vi~~a~~~~i~~iPG~~TptEi~~-a~~~Ga~~vKl 134 (212)
T PRK05718 80 LAQAIEAGAQFIVSP-GLTPPLLKAAQEGPIPLIPGVSTPSELML-GMELGLRTFKF 134 (212)
T ss_pred HHHHHHcCCCEEECC-CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-HHHCCCCEEEE
Confidence 456788999999886 788999999999999999 8888888665 66678876643
No 91
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=20.68 E-value=83 Score=18.73 Aligned_cols=14 Identities=43% Similarity=0.518 Sum_probs=11.5
Q ss_pred cCCHHHHHHHHHHH
Q 012157 410 GGGATELTVSATLK 423 (470)
Q Consensus 410 GGG~~E~~l~~~L~ 423 (470)
|||+.++.++..|.
T Consensus 2 GGGai~~~~A~Lll 15 (27)
T TIGR03867 2 GGGAIAPWLAALLL 15 (27)
T ss_pred CCchhHHHHHHHHH
Confidence 89999988887664
No 92
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.24 E-value=2.5e+02 Score=26.07 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=35.7
Q ss_pred HHHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecC----CHhHHHHHHHHhCCe
Q 012157 279 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRL----RKTDNNRIAKACGAV 330 (470)
Q Consensus 279 ~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v----~~~~L~~ia~~tGa~ 330 (470)
+|.|..+++++|++.....+ ..+.|.+.+..++-.. -.+.++.++.++|..
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 46788899999998876655 6677777764443221 247788888888873
No 93
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=20.18 E-value=2.9e+02 Score=25.77 Aligned_cols=51 Identities=25% Similarity=0.255 Sum_probs=35.2
Q ss_pred HHHHhcCCcEEEecCCCCHHHHHHHHHcCCeeeecCC--H----hHHHHHHHHhCCe
Q 012157 280 MQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR--K----TDNNRIAKACGAV 330 (470)
Q Consensus 280 ~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~vv~~v~--~----~~L~~ia~~tGa~ 330 (470)
|++..++|++||......+...+.|.+.+..++-..+ . +.++.++.++|..
T Consensus 59 E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 59 EAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 5788899999999877776666667665544443332 2 3577788888763
Done!