Query 012159
Match_columns 470
No_of_seqs 628 out of 3173
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:55:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 1.6E-32 5.4E-37 270.5 34.3 315 112-445 24-420 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 7.7E-33 2.6E-37 273.7 27.5 341 112-456 26-432 (451)
3 2gfp_A EMRD, multidrug resista 100.0 2.1E-29 7.1E-34 243.1 14.5 261 117-401 3-264 (375)
4 4aps_A DI-OR tripeptide H+ sym 100.0 7.4E-27 2.5E-31 233.5 28.4 341 117-460 16-474 (491)
5 4gc0_A D-xylose-proton symport 99.9 3.6E-26 1.2E-30 228.5 26.2 293 114-407 12-347 (491)
6 2cfq_A Lactose permease; trans 99.9 1.8E-25 6.3E-30 218.5 17.1 329 119-463 12-405 (417)
7 2xut_A Proton/peptide symporte 99.9 4.8E-22 1.7E-26 200.2 18.1 171 119-289 17-198 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 2E-15 6.7E-20 148.7 14.7 175 116-290 254-434 (451)
9 2cfq_A Lactose permease; trans 99.5 1.4E-13 4.8E-18 134.1 13.9 143 147-290 257-400 (417)
10 3o7q_A L-fucose-proton symport 99.5 3.1E-13 1.1E-17 132.4 15.3 161 121-285 265-428 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.3 6.3E-12 2.2E-16 125.1 11.4 160 131-291 300-473 (491)
12 4gc0_A D-xylose-proton symport 99.3 2.3E-10 7.8E-15 113.8 19.3 181 114-294 277-468 (491)
13 2gfp_A EMRD, multidrug resista 99.2 3.1E-11 1.1E-15 115.6 7.2 158 116-276 201-363 (375)
14 2xut_A Proton/peptide symporte 98.8 1.1E-08 3.9E-13 102.4 8.6 140 150-289 336-502 (524)
15 2g9p_A Antimicrobial peptide l 54.1 6.4 0.00022 19.4 1.3 14 168-181 2-15 (26)
16 3mkt_A Multi antimicrobial ext 27.4 3.7E+02 0.013 24.8 23.7 31 223-253 144-174 (460)
17 2jln_A MHP1; hydantoin, transp 25.4 4E+02 0.014 25.5 10.2 50 232-281 20-71 (501)
18 4f4c_A Multidrug resistance pr 24.8 7.3E+02 0.025 27.3 16.3 18 266-283 234-251 (1321)
19 4f4c_A Multidrug resistance pr 21.9 5.2E+02 0.018 28.5 11.3 20 266-285 894-913 (1321)
20 3g5u_A MCG1178, multidrug resi 21.0 8.5E+02 0.029 26.7 13.4 8 327-334 33-40 (1284)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.6e-32 Score=270.50 Aligned_cols=315 Identities=15% Similarity=0.182 Sum_probs=261.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (470)
++..+..+++.+++..+......+.+|.+.+++|++..+.|++.+++.++..++.+++|+++||+|||++++++.++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 45666677777888888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH--HhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhh-cccC-
Q 012159 192 ATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLG- 267 (470)
Q Consensus 192 ~~~~~~--~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~g- 267 (470)
+.+++. ...++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|++++.+. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 887762 245677999999999999999999999999999999999999999999999999999999999998 5555
Q ss_pred ------------------------chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhcc
Q 012159 268 ------------------------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES 323 (470)
Q Consensus 268 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (470)
||+.|++.+++.++..+..++.+.++.+++.+.+++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------------ 245 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG------------------ 245 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT------------------
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc------------------
Confidence 99999888877766655555443332221111110000
Q ss_pred CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012159 324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTY-FSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT 402 (470)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~ 402 (470)
....++++++++|.++...+..++..........++|.| +++.+|+++.+++.+.....++.++++++.|++.||+++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~ 325 (438)
T 3o7q_A 246 SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH 325 (438)
T ss_dssp SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 001235788899999999999999999899999999999 8888899999999999999999999999999999999999
Q ss_pred CCcch-----------------------------------------------------HHHHHHhhhhHHHHHHHHHHHh
Q 012159 403 GVETT-----------------------------------------------------MGITNTVGAVPGIVGVALTGYL 429 (470)
Q Consensus 403 ~~~~~-----------------------------------------------------~g~~~~~~~~~~~ig~~~~g~l 429 (470)
+.... .+... .+.++..++|.+.|++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l 404 (438)
T 3o7q_A 326 KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFV 404 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHH
Confidence 86654 44433 6789999999999999
Q ss_pred hccCCceehhhHHHHH
Q 012159 430 LDSTHSWSMSLFAPSI 445 (470)
Q Consensus 430 ~~~~~~~~~~~~~~~~ 445 (470)
.+..+++...+++.++
T Consensus 405 ~~~~g~~~~~~~~~~~ 420 (438)
T 3o7q_A 405 SDAAGNIPTAELIPAL 420 (438)
T ss_dssp HHHHTSSGGGGHHHHH
T ss_pred HHHhcchHHHHHHHHH
Confidence 9987756666665443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=7.7e-33 Score=273.75 Aligned_cols=341 Identities=16% Similarity=0.205 Sum_probs=271.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHH
Q 012159 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 191 (470)
+++.+..+++..+...+....+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 466777888888888899999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh---hhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-
Q 012159 192 ATALLPLL---AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG- 267 (470)
Q Consensus 192 ~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g- 267 (470)
+.+++++. .++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|++++++.+..|
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 184 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98887541 56678999999999999999999999999999999999999999999999999999999999888898
Q ss_pred chHHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHH
Q 012159 268 WESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346 (470)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (470)
||+.|++.+++.++..++. +.++++++.......++.+.. .... .....+.+...+....++.+++|.++...+..+
T Consensus 185 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (451)
T 1pw4_A 185 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-YPDD-YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 262 (451)
T ss_dssp STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc-cccc-chhhhhcccccccchHHHHHcCHHHHHHHHHHH
Confidence 9999999998876655444 445544333221111110000 0000 000000011111111467889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCcch-----------------
Q 012159 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL--IATGVETT----------------- 407 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~----------------- 407 (470)
+..........++|.|+++.+|+++.+.+++.+...++.+++.++.|++.||+ ++|+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP 342 (451)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987899999999999999999999999999999999 87765443
Q ss_pred -----------------------------------------HHHHHHhhhh-HHHHHHHHHHHhhccCCceehhhHHHHH
Q 012159 408 -----------------------------------------MGITNTVGAV-PGIVGVALTGYLLDSTHSWSMSLFAPSI 445 (470)
Q Consensus 408 -----------------------------------------~g~~~~~~~~-~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 445 (470)
.|+.+....+ +..++|.+.|++.+..+ +...+++.++
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~ 421 (451)
T 1pw4_A 343 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIG 421 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 8888889999 99999999999999866 5555555554
Q ss_pred HHHHHHHHHHh
Q 012159 446 FFYLTGTIVWL 456 (470)
Q Consensus 446 ~~~~~~~~~~~ 456 (470)
+.++.....+.
T Consensus 422 ~~~~~~~~~~~ 432 (451)
T 1pw4_A 422 GSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=2.1e-29 Score=243.07 Aligned_cols=261 Identities=17% Similarity=0.172 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHH
Q 012159 117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 196 (470)
..+++..++..+....+.+.+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45666777888888889999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHH
Q 012159 197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG 276 (470)
Q Consensus 197 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~ 276 (470)
. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.++.|||+.|++.+
T Consensus 83 ~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 83 V-TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred H-HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 5 556778999999999999999999999999999999999999999999999999999999999999889999999988
Q ss_pred HHHHHHHH-HHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 012159 277 LLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355 (470)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 355 (470)
++.++..+ ..+.++|+++.++++ +....++++.+++|.++...+..++........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRPVDAPR-----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF 218 (375)
T ss_dssp HHHHHHHCCCCCSSCCCSTTTCCC-----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccCCCCccc-----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 87766655 333344332221110 001234567889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012159 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA 401 (470)
Q Consensus 356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~ 401 (470)
..+.|.|+++.+|+++.+.+.+.....++.+++.++.+++.||+++
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998889999999999999999999999999999999987
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=7.4e-27 Score=233.49 Aligned_cols=341 Identities=15% Similarity=0.076 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHhhhhhHHHhHHh-hhhh-----cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhh-hcCcHHHHHHHHHH
Q 012159 117 GTTSLAFVICNMDKVNLSVAIIP-MSHR-----FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIW 189 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~ 189 (470)
+.+++..++...........++. +.++ +|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~ 95 (491)
T 4aps_A 16 STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI 95 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 34444444555544444444443 5555 99999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccc--hhhHHHHHHhhhhhHHHHHHhhHHhhhcccC
Q 012159 190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 267 (470)
+++.++++ ..++++.+++.|++.|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|++++.+.++.|
T Consensus 96 ~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 96 MLGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99887775 56667899999999999999999999999999999988 7788888999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccCCCCCC-CCCCCccchhhhhhhhhh---------------------hHH-------
Q 012159 268 WESVFYIFGLLGIAWFSGFKILQEGETSNG-ATLAPRSNYINMKKSLSA---------------------SLE------- 318 (470)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~~------- 318 (470)
||+.|++.++..++..+..+...++...+. ....+..+.....+..+. ..+
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLT 254 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhh
Confidence 999999988777666555544432221111 111111010000000000 000
Q ss_pred -----------hhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 012159 319 -----------EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVL 387 (470)
Q Consensus 319 -----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~ 387 (470)
....+.+........+....+...+..++..........++|.|+++..+.+....+.+.....++.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (491)
T 4aps_A 255 IVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIML 334 (491)
T ss_dssp HHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHH
Confidence 000000000001111223345555566666666677778889999987888877888888999999999
Q ss_pred HHHHHHHHHHHHHhcCCcc-----h-------------------------------------------------------
Q 012159 388 VTSIAAQFADNLIATGVET-----T------------------------------------------------------- 407 (470)
Q Consensus 388 ~~~~~g~l~dr~~~~~~~~-----~------------------------------------------------------- 407 (470)
+..+.+++.||+++|+... .
T Consensus 335 ~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 414 (491)
T 4aps_A 335 YTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL 414 (491)
T ss_dssp HHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999999999999886543 1
Q ss_pred ---------HHHHHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHHHHhhccC
Q 012159 408 ---------MGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFAS 460 (470)
Q Consensus 408 ---------~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (470)
.|+.+....++..+++.+.+++.+.. +...+...+++.++.+...+....+
T Consensus 415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTHHHHHTHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999998887653 3334555555555555555544443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=3.6e-26 Score=228.48 Aligned_cols=293 Identities=17% Similarity=0.213 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCC--------CchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHH
Q 012159 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW--------NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG 185 (470)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 185 (470)
.+....+++.++.+++...++..+|.+.++++. +..+.|++.+++.+|..++++++|+++||+|||++++++
T Consensus 12 ~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~ 91 (491)
T 4gc0_A 12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA 91 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 333444566777788888888888888777643 345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-----------------hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhh
Q 012159 186 VLIWSLATALLPL-----------------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL 248 (470)
Q Consensus 186 ~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 248 (470)
.+++.++.++.++ .+++++.++++|+++|++.|...+....+++|+.|+++|++..++.+.+.
T Consensus 92 ~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~ 171 (491)
T 4gc0_A 92 AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAI 171 (491)
T ss_dssp HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhh
Confidence 9999999887753 46778999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhHHhhhcc--------cCchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhh-----h
Q 012159 249 SFGSVAGLLLAPPIIEN--------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLS-----A 315 (470)
Q Consensus 249 ~~g~~~g~~~~~~l~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 315 (470)
.+|..+++.++..+... .+||+.+.+..+..++..+..+..||+++....+.+.++......+... +
T Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~ 251 (491)
T 4gc0_A 172 IFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ 251 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence 99999999888776543 2477777777777777777777777776543222222221111111000 0
Q ss_pred h----HHhhhccCCCCCHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Q 012159 316 S----LEEMGESLKDVPWKAIFRSKAVWAMIYAHF-CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTS 390 (470)
Q Consensus 316 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~ 390 (470)
. .+...+..+.......++.+.........+ ........+..+.|.+.+ ..+.+...........++..+++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4gc0_A 252 AVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTV 330 (491)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHH
Confidence 0 000011111112233344444444333333 333344555556666555 5688888888888888999999999
Q ss_pred HHHHHHHHHHhcCCcch
Q 012159 391 IAAQFADNLIATGVETT 407 (470)
Q Consensus 391 ~~g~l~dr~~~~~~~~~ 407 (470)
+.+++.||+|||+....
T Consensus 331 ~~~~l~dr~Grr~~~~~ 347 (491)
T 4gc0_A 331 LAIMTVDKFGRKPLQII 347 (491)
T ss_dssp HHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHhhcCcchhcc
Confidence 99999999999986554
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=1.8e-25 Score=218.49 Aligned_cols=329 Identities=11% Similarity=0.022 Sum_probs=212.0
Q ss_pred HHHHHHHHHhhhhhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHH
Q 012159 119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 197 (470)
+....++.........+++|. +.+++|++..+.|++.+++.++..++++++|+++||+|||++++++..+++++.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~ 91 (417)
T 2cfq_A 12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 333344444445555666666 5567899999999999999999999999999999999999999988776654321110
Q ss_pred --HhhhHH-HHHHHHHHHHHhhccCchhhHHHHhhhccCc--cchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHH
Q 012159 198 --LLAGFM-PGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (470)
Q Consensus 198 --~~~~~~-~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~ 272 (470)
...... ..++..+++.|++.+...+.....+.++.++ ++++..++....+..+|..++|.+++++.+ .+|++.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f 170 (417)
T 2cfq_A 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF 170 (417)
T ss_dssp HHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHH
Confidence 111111 1233455555555554444444444444432 456778888989999999999999999987 5899999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHhhhccCCCCCHHHHhcCHHHHHHHHHHHHHHHHH
Q 012159 273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352 (470)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 352 (470)
++.+++.++..+..+..++++++..+..+++++ ..++.....+++.+++|.++...+..++....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (417)
T 2cfq_A 171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGA--------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY 236 (417)
T ss_dssp TTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS--------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccccccccccccc--------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 887766544444444333332111100000000 000001112456788999988777666655565
Q ss_pred HHHHHHHHHHHHHHhCC---CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch----------------------
Q 012159 353 YTCLSWLPTYFSEELSL---NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT---------------------- 407 (470)
Q Consensus 353 ~~~~~~~~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~---------------------- 407 (470)
.....++|.|+.+.++. +....+++..+..++.+++.++.++++||+++|+.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 66667789888765542 23445777778888889999999999999999876543
Q ss_pred ---------------------------------HHH-HHHhhhhHHHHHHHHHHHhhccCCceehhhHHHHHHHHHHHHH
Q 012159 408 ---------------------------------MGI-TNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTI 453 (470)
Q Consensus 408 ---------------------------------~g~-~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 453 (470)
.+. .+....++++++|.+.|++.+..+ +...+.+.+++.++....
T Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHH
Confidence 334 355666889999999999988655 445555555544444444
Q ss_pred HHhhccCCCC
Q 012159 454 VWLAFASSKP 463 (470)
Q Consensus 454 ~~~~~~~~~~ 463 (470)
.+...++.++
T Consensus 396 ~~~~~~~~~~ 405 (417)
T 2cfq_A 396 SVFTLSGPGP 405 (417)
T ss_dssp HTTSSCCSCT
T ss_pred HHhhhcCCCc
Confidence 4444444333
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=4.8e-22 Score=200.23 Aligned_cols=171 Identities=21% Similarity=0.270 Sum_probs=143.3
Q ss_pred HHHHHHHHHhhhhhHHHhHHh-hhhhcC------CCchhhHHHHHHHHHHHHHhhhhhHHHhhhh-cCcHHHHHHHHHHH
Q 012159 119 TSLAFVICNMDKVNLSVAIIP-MSHRFG------WNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWS 190 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 190 (470)
+++..++..+........++. +.+++| ++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 344444444444445555544 677889 9999999999999999999999999999999 99999999999988
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHH---HHhhhhhHHHHHHhhHHhhhcccC
Q 012159 191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF---VFGGLSFGSVAGLLLAPPIIENLG 267 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~g 267 (470)
++.+++++...+++.+++.|++.|++.+...+...+++.|++|+++|+++.+. ++.+.++|.+++|.+++++.+..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG 176 (524)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88877754332678899999999999999999999999999999999876666 899999999999999999999899
Q ss_pred chHHHHHHHHHHHHHHHHHHhh
Q 012159 268 WESVFYIFGLLGIAWFSGFKIL 289 (470)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~ 289 (470)
|++.|++.+++.++..+..+..
T Consensus 177 ~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 177 AAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888876665554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.63 E-value=2e-15 Score=148.69 Aligned_cols=175 Identities=13% Similarity=0.040 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHhHHhhhhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhh--cCcHHHHHHHHHHH-H
Q 012159 116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTGVLIWS-L 191 (470)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~-~ 191 (470)
++.+++..++.......+....|.+.++ +|.+..+.+++.++..++..++.++.|++.||+ |+|+.+.++.++.. +
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 333 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 333 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3344445555555566666777776655 899999999999999999999999999999999 99999888877666 4
Q ss_pred HHHHHHHhh-hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhh-HHHHHHhhHHhhhcccCch
Q 012159 192 ATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWE 269 (470)
Q Consensus 192 ~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g~~ 269 (470)
+.+++.... .+.+.+++..++.|++.+...+....++.+.+|+++|++++|+.+....+ |..++|.+.|++.++.||+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~ 413 (451)
T 1pw4_A 334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 413 (451)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 444443222 25567778888899998888888899999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 012159 270 SVFYIFGLLGIAWFSGFKILQ 290 (470)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~ 290 (470)
..|++.+++.++..+..+.+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 414 GGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777766655554
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.50 E-value=1.4e-13 Score=134.09 Aligned_cols=143 Identities=13% Similarity=0.061 Sum_probs=116.6
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchhhHHH
Q 012159 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATD 226 (470)
Q Consensus 147 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~ 226 (470)
+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.+ ..++.+.+++..++.+++.+...+....
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888888899999999999999999999988888777665554 3344466667777778777666777788
Q ss_pred HhhhccCccchhhHHHH-HHhhhhhHHHHHHhhHHhhhcccCchHHHHHHHHHHHHHHHHHHhhc
Q 012159 227 LIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ 290 (470)
Q Consensus 227 ~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
++.|.+|++.|+++.++ ++....+|..++|.++|++.+..|++..|++.+++.++..+..+...
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999 58888999999999999999988999999988888777665554433
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.49 E-value=3.1e-13 Score=132.40 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=126.2
Q ss_pred HHHHHHHhhhhhHHHhHHhh-hhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHHHHHHH
Q 012159 121 LAFVICNMDKVNLSVAIIPM-SHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~-~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 198 (470)
+..++............|.+ .++ +|.+..+.+++.++..++..++.++.|+++||+|||+++.++.++.+++.++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~- 343 (438)
T 3o7q_A 265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA- 343 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-
Confidence 33344444444555555555 544 599999999999999999999999999999999999999999888877776664
Q ss_pred hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccC-chHHHHHHHH
Q 012159 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGL 277 (470)
Q Consensus 199 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~ 277 (470)
..++.+. ++..++.|++.+...+...++..+.+|++ ++.+.++.. ...+|..++|.+.|++.+..| ++..|++.++
T Consensus 344 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 420 (438)
T 3o7q_A 344 FAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL 420 (438)
T ss_dssp HCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred HcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3444343 34448889999999999999999999855 888888877 567999999999999999999 9999988766
Q ss_pred HHHHHHHH
Q 012159 278 LGIAWFSG 285 (470)
Q Consensus 278 ~~~~~~~~ 285 (470)
+.++..+.
T Consensus 421 ~~~~~~~~ 428 (438)
T 3o7q_A 421 CFAVIFIF 428 (438)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.31 E-value=6.3e-12 Score=125.07 Aligned_cols=160 Identities=19% Similarity=0.085 Sum_probs=121.2
Q ss_pred hhHHHhHHh-hhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHH-----HHHHHHHHHHHHHHHhh----
Q 012159 131 VNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ-----TGVLIWSLATALLPLLA---- 200 (470)
Q Consensus 131 ~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~~~~~~~~~~~~~---- 200 (470)
......++. ..+.++.+..+.+++.+...++..++.++.|++.||+|||+... ++.++.+++.+++....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG 379 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444454 34446777677888889999999999999999999999986554 56666666554443321
Q ss_pred ----hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchHHHHHHH
Q 012159 201 ----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG 276 (470)
Q Consensus 201 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~ 276 (470)
.+.+.+++..++.|++.+...+....++.+.+|++.|++++|+.+....+|..++|.+.+.+.+. ++.+.|++.+
T Consensus 380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~ 458 (491)
T 4aps_A 380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFG 458 (491)
T ss_dssp CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 14466777888999999998999999999999999999999999999999999999999988764 6778888888
Q ss_pred HHHHHHHHHHHhhcc
Q 012159 277 LLGIAWFSGFKILQE 291 (470)
Q Consensus 277 ~~~~~~~~~~~~~~~ 291 (470)
++.++..+..+.+.+
T Consensus 459 ~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 459 LGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 877666655555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.26 E-value=2.3e-10 Score=113.75 Aligned_cols=181 Identities=12% Similarity=-0.004 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhHHhhhhhcCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHHHHHHH
Q 012159 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (470)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 193 (470)
+.........+........+..+.+.+.+..+.+............+...++.++++++.||+|||+.++.+....+++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence 33444444444555555666667788888888888888888888889999999999999999999999998888777766
Q ss_pred HHHHHhh----hHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhc-----
Q 012159 194 ALLPLLA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----- 264 (470)
Q Consensus 194 ~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----- 264 (470)
+.++... .....++...+..+.......+....+.+|.+|.+.|++++|+......+|..+++.+.+.+.+
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~ 436 (491)
T 4gc0_A 357 FSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV 436 (491)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553221 1111222222222222234457778999999999999999999999999999999888766543
Q ss_pred -ccCchHHHHHHHHHHHHHHHHH-HhhccCCC
Q 012159 265 -NLGWESVFYIFGLLGIAWFSGF-KILQEGET 294 (470)
Q Consensus 265 -~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 294 (470)
..++.+.|++.++++++..+.. +++||++.
T Consensus 437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 3466778888888877665544 55666543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.16 E-value=3.1e-11 Score=115.57 Aligned_cols=158 Identities=13% Similarity=-0.050 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHhHHhhhhh-cCCCchhhHHHHHHHHHHHHHhhhhhHHHhhhhcCcHHHHHHHHH-HHHHH
Q 012159 116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI-WSLAT 193 (470)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~~ 193 (470)
+....+..++.......+....|.+.++ +|.+..+.+++.+...++..++.++.+++.||++++. ..+..+ ..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~ 278 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGL 278 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3444445555555556666677775544 8999999999999999999999999999999998832 222222 22222
Q ss_pred H--HHHH-hhhHHHHHHHHHHHHHhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhcccCchH
Q 012159 194 A--LLPL-LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (470)
Q Consensus 194 ~--~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 270 (470)
. .... ..++.+.+++..++.|++.+...+...+++.|.+| ++|++++|+.+....+|..++|.+.+.+.+..+++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 357 (375)
T 2gfp_A 279 LMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL 357 (375)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 1 1111 12355667778888999999999999999999998 899999999999999999999999999988777877
Q ss_pred HHHHHH
Q 012159 271 VFYIFG 276 (470)
Q Consensus 271 ~~~~~~ 276 (470)
.+++.+
T Consensus 358 ~~~~~~ 363 (375)
T 2gfp_A 358 GLLMTL 363 (375)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.77 E-value=1.1e-08 Score=102.35 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHh----hhhcC----cHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHH
Q 012159 150 VAGLVQSSFFWGYALSQLPGGWLA----KIFGG----RKVLQTGVLIWSLATALLPLLA--------GFMPGLVLSRVLV 213 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~g~----r~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~l~ 213 (470)
..+++.....++..+..++.+++. +|.|+ ++.+.++.++.+++.++++... .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666666777777777764 55543 3456667777666665554321 2445677788999
Q ss_pred HhhccCchhhHHHHhhhccCccchhhHHHHHHhhhhhHHHHHHhhHHhhhccc--Cc---------hHHHHHHHHHHHHH
Q 012159 214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GW---------ESVFYIFGLLGIAW 282 (470)
Q Consensus 214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~---------~~~~~~~~~~~~~~ 282 (470)
|++.+...+...+++.+..|+++|++++|+.+....+|..+||.+.+.+.+.. +| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988742 13 33366666666655
Q ss_pred HHHHHhh
Q 012159 283 FSGFKIL 289 (470)
Q Consensus 283 ~~~~~~~ 289 (470)
.++.+++
T Consensus 496 ~~~~~~~ 502 (524)
T 2xut_A 496 AIVFALY 502 (524)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 5554444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=54.07 E-value=6.4 Score=19.37 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=11.4
Q ss_pred hhHHHhhhhcCcHH
Q 012159 168 PGGWLAKIFGGRKV 181 (470)
Q Consensus 168 ~~g~l~dr~g~r~~ 181 (470)
++|.++.+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=27.42 E-value=3.7e+02 Score=24.82 Aligned_cols=31 Identities=0% Similarity=-0.306 Sum_probs=15.9
Q ss_pred hHHHHhhhccCccchhhHHHHHHhhhhhHHH
Q 012159 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSV 253 (470)
Q Consensus 223 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 253 (470)
.........+...++.+...+.+....+-.+
T Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 174 (460)
T 3mkt_A 144 LLFQALRSFTDGMSLTKPAMVIGFIGLLLNI 174 (460)
T ss_dssp HHHHHHTTTTCTTSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3344445555556666655555554444333
No 17
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=25.40 E-value=4e+02 Score=25.53 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=24.4
Q ss_pred cCccch-hhHHHHHHhhhhhHHHHHHh-hHHhhhcccCchHHHHHHHHHHHH
Q 012159 232 IPLEER-SRAVSFVFGGLSFGSVAGLL-LAPPIIENLGWESVFYIFGLLGIA 281 (470)
Q Consensus 232 ~~~~~r-~~~~~~~~~~~~~g~~~g~~-~~~~l~~~~g~~~~~~~~~~~~~~ 281 (470)
.|+++| .....+.....+....++.. +++.+....++...++...+-.++
T Consensus 20 vp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li 71 (501)
T 2jln_A 20 TRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTI 71 (501)
T ss_dssp CCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHH
Confidence 465666 45555555544444444444 333333344566666554443333
No 18
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=24.77 E-value=7.3e+02 Score=27.32 Aligned_cols=18 Identities=11% Similarity=0.359 Sum_probs=9.5
Q ss_pred cCchHHHHHHHHHHHHHH
Q 012159 266 LGWESVFYIFGLLGIAWF 283 (470)
Q Consensus 266 ~g~~~~~~~~~~~~~~~~ 283 (470)
.+|+.++...+++.+..+
T Consensus 234 ~~~~l~lv~l~~~p~~~~ 251 (1321)
T 4f4c_A 234 HSWQLTLVMLAVTPIQAL 251 (1321)
T ss_dssp HCHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467766655544444333
No 19
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=21.87 E-value=5.2e+02 Score=28.48 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=10.5
Q ss_pred cCchHHHHHHHHHHHHHHHH
Q 012159 266 LGWESVFYIFGLLGIAWFSG 285 (470)
Q Consensus 266 ~g~~~~~~~~~~~~~~~~~~ 285 (470)
.+|..++.+.+++.++.+..
T Consensus 894 ~~~~l~lv~l~~~~~~~~~~ 913 (1321)
T 4f4c_A 894 YGWQMALLIIAILPIVAFGQ 913 (1321)
T ss_dssp HCHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 46776666555544444333
No 20
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=21.03 E-value=8.5e+02 Score=26.70 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=3.9
Q ss_pred CCHHHHhc
Q 012159 327 VPWKAIFR 334 (470)
Q Consensus 327 ~~~~~~~~ 334 (470)
.+++.+++
T Consensus 33 ~~~~~l~~ 40 (1284)
T 3g5u_A 33 VSVLTMFR 40 (1284)
T ss_dssp CTTHHHHT
T ss_pred ccHHHHHH
Confidence 34555554
Done!