BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012160
(470 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255565001|ref|XP_002523493.1| conserved hypothetical protein [Ricinus communis]
gi|223537200|gb|EEF38832.1| conserved hypothetical protein [Ricinus communis]
Length = 474
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 329/513 (64%), Positives = 361/513 (70%), Gaps = 82/513 (15%)
Query: 1 MQPCSSGGEMQGISSLLSNGS---------------------HEQQSQIHQSATFDPT-- 37
MQPCS EMQGI++LL+ S + Q+Q Q+ FDP+
Sbjct: 1 MQPCSR--EMQGINTLLNQSSTATTTSTSQIPIHHNHHHHHHQDLQNQQIQNPHFDPSPS 58
Query: 38 SQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENN 97
S DDFLEQMLS+LPSCSW DLKSPW + N+N +PRDLSDET PS NN
Sbjct: 59 SNDDFLEQMLSTLPSCSWADLKSPWDLT------TTANLNLPKPRDLSDETPPSLPDSNN 112
Query: 98 VPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAA----KFMMQQQQQQIMMAAARGGI 153
FDES++LASK+RQHQISG G G + AAA K M+QQQ +M AAARGG+
Sbjct: 113 NVGFHNFDESVLLASKLRQHQISGGGGGGGPSPAAAAAAAKLMLQQQL--MMAAAARGGL 170
Query: 154 GLPLSLGNGGDNDIVDVSSFKS-QQGGDGSVQALYNGF-TGSLHGSTQP--QHFHHLQ-- 207
G ND++D FKS QGGDGSVQ LYNGF TGS+HG+ Q QHFHH Q
Sbjct: 171 G---------QNDVLD--GFKSPNQGGDGSVQGLYNGFGTGSMHGTGQSSNQHFHHPQGG 219
Query: 208 VRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAE 267
+M Q FG+PG M Q QASGSTGG PAQ P+QRVRARRGQATDPHSIAE
Sbjct: 220 AAAMQAQNFGSPGGAM-MNQPQASGSTGGA------PAQ-PRQRVRARRGQATDPHSIAE 271
Query: 268 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 327
RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP
Sbjct: 272 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 331
Query: 328 LVADMSSEGGGGGDCIQANG----------RNPNGAQTTSANDSLTVTEHQVAKLMEEDM 377
LVAD+SSE GGGDCIQAN R N +QT S+NDSLTVTEHQVAKLMEEDM
Sbjct: 332 LVADISSE--GGGDCIQANANGAAGNGSLPRANNSSQTPSSNDSLTVTEHQVAKLMEEDM 389
Query: 378 GSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGP 437
GSAMQYLQGKGLCLMPISLATAISTATCH+RN N+ NP LLQSNGEGP
Sbjct: 390 GSAMQYLQGKGLCLMPISLATAISTATCHNRN------TTTNSLLNPSR--LLQSNGEGP 441
Query: 438 TSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
+SPSMSVLTVQSAT+GNGG D SVKDAASVSKP
Sbjct: 442 SSPSMSVLTVQSATLGNGGLDPSVKDAASVSKP 474
>gi|225445889|ref|XP_002276403.1| PREDICTED: uncharacterized protein LOC100243222 [Vitis vinifera]
Length = 519
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 325/545 (59%), Positives = 358/545 (65%), Gaps = 101/545 (18%)
Query: 1 MQPCSSGGEMQGISSLLS----------NGSHEQQ-------------------SQIHQS 31
MQPCS EMQ I+SLL+ NG H SQI
Sbjct: 1 MQPCSR--EMQAINSLLNPSQISLQDLQNGHHHHHHHQHQQQQQHQHHPQIPNPSQIQLP 58
Query: 32 AT-FDPTSQDDFLEQMLSSLPSCSWTDL----KSPWGVVDLNPNNNNNNINNKQPRDLSD 86
T FD +S DDFLEQMLS+LPS W+DL KSPW +LN +N + +NK RDLSD
Sbjct: 59 NTHFDSSSHDDFLEQMLSTLPS--WSDLPANPKSPW---ELNASNPISMPSNKS-RDLSD 112
Query: 87 ETAPSTTQENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMM 146
+T PS +NV F FDES +LASK+RQHQISGN+ + SA + + M
Sbjct: 113 DTTPSN--PDNV--QFAFDESAMLASKLRQHQISGNSSAAK--SALMLQQQLLLSRGVAM 166
Query: 147 ---------AAARGGIGLPLSLGNG-------GDNDIVD-VSSFKS-QQGGDGSVQALYN 188
A G + LPLSL NG ND+VD SSFKS QGGDGSVQALYN
Sbjct: 167 GRSPSNGSGAGESGLLQLPLSLSNGDSCLVDRSQNDVVDGSSSFKSPNQGGDGSVQALYN 226
Query: 189 GFTGSLHGS----TQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTP 244
GF G+LHGS Q Q+FHH Q SM Q +GAP VMNQT A TG GG P
Sbjct: 227 GFAGALHGSGQASNQAQNFHHPQGGSMQAQNYGAPATVMNQTPA-----TGSAGGA---P 278
Query: 245 AQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK------TDKASMLD 298
AQ P+QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK TDKASMLD
Sbjct: 279 AQ-PRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKVIHPTLTDKASMLD 337
Query: 299 EIIDYVKFLQLQVKV---------LSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRN 349
EIIDYVKFLQLQVKV LSMSRLGGAAAVAPLVADMSSE G GR
Sbjct: 338 EIIDYVKFLQLQVKVFLTVVVVQVLSMSRLGGAAAVAPLVADMSSEASGTSG--PTGGRA 395
Query: 350 PNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRN 409
NG QTT++NDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIST TCHSRN
Sbjct: 396 TNGTQTTTSNDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTTTCHSRN 455
Query: 410 PI---ISTSNNNNNNGNPHHNPLL-QSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAA 465
P+ + + +N NNG+ H +PLL SN +GP+SPSMSVLTVQSATMGNG AD VKDAA
Sbjct: 456 PMVAAAAVAASNINNGS-HTHPLLPNSNADGPSSPSMSVLTVQSATMGNGLADAPVKDAA 514
Query: 466 SVSKP 470
SVSKP
Sbjct: 515 SVSKP 519
>gi|147836162|emb|CAN75431.1| hypothetical protein VITISV_021146 [Vitis vinifera]
Length = 486
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 283/423 (66%), Positives = 308/423 (72%), Gaps = 52/423 (12%)
Query: 82 RDLSDETAPSTTQENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQ 141
RDLSD+T PS +NV F FDES +LASK+RQHQISGN+ + SA
Sbjct: 82 RDLSDDTTPS--NPDNV--QFAFDESAMLASKLRQHQISGNSSAAK--SALMLQQQLLLS 135
Query: 142 QQIMM---------AAARGGIGLPLSLGNG-------GDNDIVD-VSSFKS-QQGGDGSV 183
+ + M A G + LPLSL NG ND+VD SS KS QGGDGSV
Sbjct: 136 RGVAMGRSPSNGSGAGESGLLQLPLSLSNGDSCLVDRSQNDVVDGSSSXKSPNQGGDGSV 195
Query: 184 QALYNGFT-GSLHGS----TQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGG 238
QALYNGF G+LHGS Q Q+FHH Q SM Q +GAP VMNQT A TG G
Sbjct: 196 QALYNGFAPGALHGSGQASNQAQNFHHPQGGSMQAQNYGAPATVMNQTPA-----TGSAG 250
Query: 239 GGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLD 298
G PAQ P+QRVRARRGQAT PHSIAERLRRERIAERMKALQELVPNANKTDKASMLD
Sbjct: 251 GA---PAQ-PRQRVRARRGQATHPHSIAERLRRERIAERMKALQELVPNANKTDKASMLD 306
Query: 299 EIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQAN-------GRNPN 351
EIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSE GGGDCIQA+ GR N
Sbjct: 307 EIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSE--GGGDCIQASGTSGPTGGRATN 364
Query: 352 GAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPI 411
G QT ++NDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIST TCHSRNP+
Sbjct: 365 GTQTXTSNDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTTTCHSRNPM 424
Query: 412 ---ISTSNNNNNNGNPHHNPLL-QSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASV 467
+ + +N NNG+ H +PLL SN +GP+SPSMSVLTVQSATMGNG AD VKDAASV
Sbjct: 425 VAAAAVAASNINNGS-HTHPLLPNSNADGPSSPSMSVLTVQSATMGNGLADAPVKDAASV 483
Query: 468 SKP 470
SKP
Sbjct: 484 SKP 486
>gi|356530637|ref|XP_003533887.1| PREDICTED: transcription factor bHLH66-like [Glycine max]
Length = 452
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 281/464 (60%), Positives = 307/464 (66%), Gaps = 57/464 (12%)
Query: 32 ATFDPTSQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLS--DETA 89
A FD TS DDFLEQMLSS CSWTDL ++ +PN P D+ DET
Sbjct: 21 AHFDSTSHDDFLEQMLSS---CSWTDLNHNKPLL-WDPNT---------PNDIKPPDETT 67
Query: 90 PSTTQEN---NVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMM 146
PS ++ NV FDE LASK R HQIS N N +AAA FM+Q Q +
Sbjct: 68 PSNNNDDATANV-VFPSFDEHSTLASKFRNHQISPNNAPKN--AAAAAFMLQHQ-----L 119
Query: 147 AAARGGIGLPLSLGNGGDNDIVDVSSFKSQQ-GGDGSVQALYNGFTGSLHG----STQPQ 201
G + +PLSL ND+VD SSFKS GG+ SVQALYNGF GSLHG S Q Q
Sbjct: 120 LRDSGLLNMPLSLPG---NDVVDASSFKSPNPGGEASVQALYNGFAGSLHGAGQSSNQTQ 176
Query: 202 HFHHLQVRSMP--GQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQA 259
HF + Q S P GQ FGA QA GS GG QP+QRVRARRGQA
Sbjct: 177 HFQNPQGSSNPMQGQNFGAAPAGGGGATNQAPGSGAAAGGA----PAQPRQRVRARRGQA 232
Query: 260 TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL
Sbjct: 233 TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 292
Query: 320 GGAAAVAPLVADMSSEGGGGGDCIQANGRNPNG-------------AQTTSANDSLTVTE 366
GGAAAVAPLVADM SE GGGDCIQANG N NG + TT +NDSLT+TE
Sbjct: 293 GGAAAVAPLVADMYSE--GGGDCIQANG-NSNGGGAHAPNSNTNQTSATTPSNDSLTMTE 349
Query: 367 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHH 426
HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCH+RN ++ + N
Sbjct: 350 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNVTVNVNPLINAAAAAQI 409
Query: 427 NPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
G+GP+SPSMSVLTVQSA N G+ +VKDAASVSKP
Sbjct: 410 PTAANPAGDGPSSPSMSVLTVQSAVAVNDGS-AAVKDAASVSKP 452
>gi|356556714|ref|XP_003546668.1| PREDICTED: transcription factor bHLH66-like [Glycine max]
Length = 475
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 290/528 (54%), Positives = 323/528 (61%), Gaps = 111/528 (21%)
Query: 1 MQPCSSGGEMQGISSLLSNGS--------HEQQSQI--------HQSATFDPTSQDDFLE 44
MQPCS EMQG++SLL++ S + +QI HQ A FD TS DDFLE
Sbjct: 1 MQPCSK--EMQGLNSLLNSSSQISLQDLQNHTTNQIQNSHMNHQHQLAHFDSTSHDDFLE 58
Query: 45 QMLSSLPSCSWTDLKSPWGVVDLNPNN----NNNNINNKQPRDLSDETAPSTTQEN---N 97
QMLSS CSWTDL NPN + N +N+ +P DET PS + N
Sbjct: 59 QMLSS---CSWTDL---------NPNKPLLWDPNTLNDIKP---PDETTPSNNNNDATTN 103
Query: 98 VPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPL 157
V + FDE LASK R HQIS + + N+AAA M+Q Q + G + +PL
Sbjct: 104 VASFSSFDEHSTLASKFRNHQIS-SNNNAPKNAAAAALMLQHQ-----LLRDSGLLNMPL 157
Query: 158 SLGNGGDNDIVDVSSFKSQQ-GGDGSVQALYNGFTGSLHG----STQPQHFHHLQVRSMP 212
SL G++ +VD S+F+S G SVQ YNGF GSLHG S Q QHF H Q S P
Sbjct: 158 SLP--GNDVVVDASTFESPNPSGKASVQTFYNGFAGSLHGVGQSSNQTQHFQHPQGSSNP 215
Query: 213 --GQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQP----------KQRVRARRGQAT 260
GQ FGA GGG N +QRVRARRGQAT
Sbjct: 216 MQGQNFGA--------------VPAGGGSATNQAPASGAAAGGAPAQPRQRVRARRGQAT 261
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 320
DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG
Sbjct: 262 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 321
Query: 321 GAAAVAPLVADMSSEGGGGGDCIQANGRNPNG--------------AQTTSANDSLTVTE 366
GAAAVAPLVADMSSE GGGDCIQANG++ G TT++NDSLT+TE
Sbjct: 322 GAAAVAPLVADMSSE--GGGDCIQANGKSNGGGAQASTTNTNTNQTTATTTSNDSLTMTE 379
Query: 367 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSR----NPIISTSNNNNNNG 422
HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATC +R NP+I N G
Sbjct: 380 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCPTRNVNVNPLI-----NAAAG 434
Query: 423 NPHHNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
H GEGP+SPSMSVLTVQSA GN G AASVSKP
Sbjct: 435 ATHFPTAANPAGEGPSSPSMSVLTVQSAIAGNDG-------AASVSKP 475
>gi|449457905|ref|XP_004146688.1| PREDICTED: uncharacterized protein LOC101211609 [Cucumis sativus]
gi|449529094|ref|XP_004171536.1| PREDICTED: uncharacterized protein LOC101228749 [Cucumis sativus]
Length = 422
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 266/510 (52%), Positives = 304/510 (59%), Gaps = 128/510 (25%)
Query: 1 MQPCSSGGEMQGISSLLSNGSHEQQ-----------------SQIHQSATFDPT--SQDD 41
MQPCS EMQ ++SLL++ Q S H FDP+ S DD
Sbjct: 1 MQPCSR--EMQSLNSLLNHSQISLQDLHADHHLNPPPPQIPPSHFHH---FDPSAASNDD 55
Query: 42 FLEQMLSSLPSCSWTDL-----KSPWGVVDLNPNNNNNNINNKQPRDLSDETAPS--TTQ 94
FLEQML+++PSCSW DL KSPW DLNP N K RD+SD+ + T
Sbjct: 56 FLEQMLNTIPSCSWPDLNPSNPKSPW---DLNPIN-------KPSRDISDDPHQNHLTAT 105
Query: 95 ENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIG 154
A + ++L+ M SG+ G+G A G
Sbjct: 106 SPAAKAAVMLQQQLLLSRGM-----SGSAGNG--------------------VADHGLPP 140
Query: 155 LPLSLGNG----GDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQVRS 210
+PLSLGN ND+VD S F+ G GS+Q+
Sbjct: 141 MPLSLGNADLDRSQNDVVDGSCFRPPNSG-GSLQS------------------------- 174
Query: 211 MPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLR 270
+FGAPG VMNQT GGG QPKQ+VRARRGQATDPHSIAERLR
Sbjct: 175 ---NSFGAPGNVMNQTP---------GGGSAGVSQSQPKQKVRARRGQATDPHSIAERLR 222
Query: 271 RERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVA 330
RERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVA
Sbjct: 223 RERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVA 282
Query: 331 DMSSEGGGGGDCIQANG----------RNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSA 380
D+SSE GGG+C+Q +G G QT S NDS+TVTE QVAKLME+DMGSA
Sbjct: 283 DVSSE--GGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQQVAKLMEKDMGSA 340
Query: 381 MQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTSP 440
MQYLQGKGLCLMPISLATAIST+TCHSRNP++ N G +P++ SNGEGP+SP
Sbjct: 341 MQYLQGKGLCLMPISLATAISTSTCHSRNPLM----NGGGGGGGSQHPVMGSNGEGPSSP 396
Query: 441 SMSVLTVQSATMGNGGADGSVKDAASVSKP 470
SMSVLTVQS +MGN GSVKDAASVSKP
Sbjct: 397 SMSVLTVQSTSMGN----GSVKDAASVSKP 422
>gi|227345480|gb|ACP28172.1| roothairless1/slippery [Lotus japonicus]
Length = 386
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 260/451 (57%), Positives = 286/451 (63%), Gaps = 90/451 (19%)
Query: 34 FDPTSQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTT 93
FDPTS DDFLEQMLS+LPS W +PN+ DLS ET P
Sbjct: 12 FDPTSHDDFLEQMLSTLPSF--------W-----DPNS-----------DLSAETTP--- 44
Query: 94 QENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGI 153
+NV A F FDE L SK R HQI+ T AAA M+QQ Q M A
Sbjct: 45 --DNV-AAFPFDEHSTLNSKFRNHQITSPT-----TKAAAALMLQQHLLQ--MPA----- 89
Query: 154 GLPLSLGNGGDNDIVDVSSF-KSQQGG---DGSVQALYNGFTGSLHGSTQPQHFHHL--- 206
ND+VD ++F KS G SVQALYNGFTGSL+G+ QHF H
Sbjct: 90 -----------NDVVDPTNFFKSPNPGGEASASVQALYNGFTGSLNGTQPQQHFQHPPQG 138
Query: 207 QVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIA 266
+ GQ FGA NQ + + GGG G P RVRARRGQATDPHSIA
Sbjct: 139 NSNQIQGQNFGA----TNQAPPASGSAGGGGNQGQAKP------RVRARRGQATDPHSIA 188
Query: 267 ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA
Sbjct: 189 ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 248
Query: 327 PLVADMSSE---GGGGGDCIQ--ANGRNPN--GAQTTSANDSLTVTEHQVAKLMEEDMGS 379
PLVAD+SSE GGGGGDC+ A G P ++ NDSLT+TEHQVAKLMEEDMGS
Sbjct: 249 PLVADISSEGGGGGGGGDCVTNGAGGVLPRSTTTAASTTNDSLTMTEHQVAKLMEEDMGS 308
Query: 380 AMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTS 439
AMQYLQGKGLCLMPISLATAISTATCH+R+P+I + N SNGEGP+S
Sbjct: 309 AMQYLQGKGLCLMPISLATAISTATCHTRSPLIPNNLANLAAAA-------ASNGEGPSS 361
Query: 440 PSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
P+MSVLTVQSA GN D +VKD VSKP
Sbjct: 362 PNMSVLTVQSAVAGN---DSTVKD---VSKP 386
>gi|357480123|ref|XP_003610347.1| Transcription factor bHLH66 [Medicago truncatula]
gi|355511402|gb|AES92544.1| Transcription factor bHLH66 [Medicago truncatula]
Length = 403
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 241/436 (55%), Positives = 285/436 (65%), Gaps = 82/436 (18%)
Query: 40 DDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNVP 99
DDFL+Q+LS T+L W +D PN+N + + P + T P+ +++N
Sbjct: 43 DDFLKQILS-------TNLPPSWNTLD--PNHNKPLLWD--PNSDENVTFPNYDEQHNN- 90
Query: 100 AGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPLSL 159
LASK R HQI+ T AA M+ + A + G + +P
Sbjct: 91 ----------LASKFRNHQITDKT--------AAALML-------LTADSGGLLHMPADF 125
Query: 160 GNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQVRSMPGQTFGAP 219
+ ND+V+ SS Q GD SVQAL+NGF+GSLHG QP HF Q GQ+FG+
Sbjct: 126 -DSSQNDVVNTSSLL-QAAGDASVQALFNGFSGSLHGVAQPHHFQPPQ-----GQSFGS- 177
Query: 220 GPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMK 279
G V QA ASG+ PAQ P+Q+VRARRGQATDPHSIAERLRRERIAERMK
Sbjct: 178 GSVSATNQAPASGA----------PAQ-PRQKVRARRGQATDPHSIAERLRRERIAERMK 226
Query: 280 ALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGG 339
ALQELVPNANKTDKASMLDEIIDYVKFLQ+QVKVLSMSRLGGA AVAPLVADMSSE G
Sbjct: 227 ALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAGAVAPLVADMSSE--GV 284
Query: 340 GDCIQANG------RNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMP 393
DC+Q NG RNP A +S+N+SLT+TEHQVAKLMEEDMGSAMQYLQGKGLCLMP
Sbjct: 285 SDCVQTNGNGGVHPRNPKTA--SSSNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMP 342
Query: 394 ISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATMG 453
ISLATAISTATCH+RNP+I+ +NNN N + NP+ SNG+GP+SP MSV ++
Sbjct: 343 ISLATAISTATCHTRNPLINAANNNINGSS---NPITASNGDGPSSPGMSVNSI------ 393
Query: 454 NGGADGSVKDAASVSK 469
VKDA S SK
Sbjct: 394 -------VKDANSASK 402
>gi|224143968|ref|XP_002325140.1| predicted protein [Populus trichocarpa]
gi|222866574|gb|EEF03705.1| predicted protein [Populus trichocarpa]
Length = 251
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 212/272 (77%), Positives = 218/272 (80%), Gaps = 33/272 (12%)
Query: 211 MPGQTFGAPGP----VMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIA 266
M Q FGA G VMNQ QA SGS GG PAQ P+QRVRARRGQATDPHSIA
Sbjct: 1 MQAQNFGAQGAATTAVMNQPQA--SGSNGGA------PAQ-PRQRVRARRGQATDPHSIA 51
Query: 267 ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA
Sbjct: 52 ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 111
Query: 327 PLVADMSSEGGGGGDCIQANG------RNPNGAQTTSAND-SLTVTEHQVAKLMEEDMGS 379
PLVADMSSE GGDCIQA+ R NG QT ND SLTVTEHQVAKLMEEDMGS
Sbjct: 112 PLVADMSSE--AGGDCIQASADGGSLSRTSNGNQTARTNDSSLTVTEHQVAKLMEEDMGS 169
Query: 380 AMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTS 439
AMQYLQGKGLCLMPISLATAISTATCH+R+P I NNN H+ LLQSNGEGP S
Sbjct: 170 AMQYLQGKGLCLMPISLATAISTATCHNRSPAI---NNN-------HHALLQSNGEGPAS 219
Query: 440 PSMSVLTVQSATMGNGGAD-GSVKDAASVSKP 470
PSMSVLTVQSATMGN G D G+VKDAASVSKP
Sbjct: 220 PSMSVLTVQSATMGNVGGDGGAVKDAASVSKP 251
>gi|357480125|ref|XP_003610348.1| Transcription factor bHLH66 [Medicago truncatula]
gi|355511403|gb|AES92545.1| Transcription factor bHLH66 [Medicago truncatula]
Length = 400
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 240/436 (55%), Positives = 284/436 (65%), Gaps = 85/436 (19%)
Query: 40 DDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNVP 99
DDFL+Q+LS T+L W +D PN+N + + P + T P+ +++N
Sbjct: 43 DDFLKQILS-------TNLPPSWNTLD--PNHNKPLLWD--PNSDENVTFPNYDEQHNN- 90
Query: 100 AGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPLSL 159
LASK R HQI+ T AA M+ + A + G + +P
Sbjct: 91 ----------LASKFRNHQITDKT--------AAALML-------LTADSGGLLHMPADF 125
Query: 160 GNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQVRSMPGQTFGAP 219
+ ND+V+ SS GD SVQAL+NGF+GSLHG QP HF Q GQ+FG+
Sbjct: 126 -DSSQNDVVNTSS----AAGDASVQALFNGFSGSLHGVAQPHHFQPPQ-----GQSFGS- 174
Query: 220 GPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMK 279
G V QA ASG+ PAQ P+Q+VRARRGQATDPHSIAERLRRERIAERMK
Sbjct: 175 GSVSATNQAPASGA----------PAQ-PRQKVRARRGQATDPHSIAERLRRERIAERMK 223
Query: 280 ALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGG 339
ALQELVPNANKTDKASMLDEIIDYVKFLQ+QVKVLSMSRLGGA AVAPLVADMSSE G
Sbjct: 224 ALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAGAVAPLVADMSSE--GV 281
Query: 340 GDCIQANG------RNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMP 393
DC+Q NG RNP A +S+N+SLT+TEHQVAKLMEEDMGSAMQYLQGKGLCLMP
Sbjct: 282 SDCVQTNGNGGVHPRNPKTA--SSSNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMP 339
Query: 394 ISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATMG 453
ISLATAISTATCH+RNP+I+ +NNN N + NP+ SNG+GP+SP MSV ++
Sbjct: 340 ISLATAISTATCHTRNPLINAANNNINGSS---NPITASNGDGPSSPGMSVNSI------ 390
Query: 454 NGGADGSVKDAASVSK 469
VKDA S SK
Sbjct: 391 -------VKDANSASK 399
>gi|356564915|ref|XP_003550692.1| PREDICTED: transcription factor bHLH69-like [Glycine max]
Length = 369
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 251/478 (52%), Positives = 278/478 (58%), Gaps = 119/478 (24%)
Query: 1 MQPCSSGGEMQG---ISSLLSNGSH-EQQSQIHQSATFDPTSQDDFLEQMLSSLPSCSWT 56
MQPCS EMQG +SL +N + Q QIH FD TS DDFL+QMLS+LPS SWT
Sbjct: 1 MQPCSR--EMQGPNTTNSLFNNNTTCSNQPQIH----FDTTSNDDFLKQMLSNLPSSSWT 54
Query: 57 DLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNVPAGFQFD-ESMILASKMR 115
D+T P +NNV F +D E LASK R
Sbjct: 55 ----------------------------LDQTTP----DNNV--VFPYDVEHANLASKFR 80
Query: 116 QHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPLSLGNGGDNDIVDVSSFKS 175
HQI+ +N A+ M+ AAA L + + ND+VD SFKS
Sbjct: 81 NHQIT------TDNDKASALMLHHHLLLSSSAAAANSQLLHMPFDSSAPNDVVDAPSFKS 134
Query: 176 --QQGGDGSVQALYNGFTGSLHGSTQPQHF--HHLQVRSMPGQTFGAPGPVMNQTQAQAS 231
G SVQALYNGF+GSL + Q HF H + GQ+FGA P
Sbjct: 135 LTPNGEPASVQALYNGFSGSLQPNNQTHHFQQHPQPQVQVQGQSFGASAP---------- 184
Query: 232 GSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT 291
GGG G QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT
Sbjct: 185 ---ANGGGSG-----QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT 236
Query: 292 DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPN 351
DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVA+ GGGDCIQA N
Sbjct: 237 DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAE------GGGDCIQAKRSN-- 288
Query: 352 GAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPI 411
+NDSL +TE QVAKLMEEDMGSAMQYLQGKGLCLMPISLA+AIS ATCH P
Sbjct: 289 ------SNDSLAMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLASAISKATCH---PF 339
Query: 412 ISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSK 469
I NG+GP+SP MS LT+ A+ VKDAASVSK
Sbjct: 340 I--------------------NGDGPSSPRMSALTL---------ANAVVKDAASVSK 368
>gi|297743632|emb|CBI36515.3| unnamed protein product [Vitis vinifera]
Length = 282
Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 216/319 (67%), Positives = 227/319 (71%), Gaps = 69/319 (21%)
Query: 165 NDIVD-VSSFKS-QQGGDGSVQALYNGFTGSLHGS----TQPQHFHHLQVRSMPGQTFGA 218
ND+VD SSFKS QGGDGSVQALYNGF G+LHGS Q Q+FHH Q SM Q +GA
Sbjct: 20 NDVVDGSSSFKSPNQGGDGSVQALYNGFAGALHGSGQASNQAQNFHHPQGGSMQAQNYGA 79
Query: 219 PGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERM 278
P VMNQT A +GS GG PAQ P+QRVRARRGQATDPHSIAERLRRERIAERM
Sbjct: 80 PATVMNQTPA--TGSAGG------APAQ-PRQRVRARRGQATDPHSIAERLRRERIAERM 130
Query: 279 KALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGG 338
KALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSE G
Sbjct: 131 KALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSE--G 188
Query: 339 GGDCIQAN-------GRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCL 391
GGDCIQA+ GR NG QTT++NDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCL
Sbjct: 189 GGDCIQASGTSGPTGGRATNGTQTTTSNDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCL 248
Query: 392 MPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSAT 451
MPISLATAIST ++T
Sbjct: 249 MPISLATAISTT---------------------------------------------TST 263
Query: 452 MGNGGADGSVKDAASVSKP 470
MGNG AD VKDAASVSKP
Sbjct: 264 MGNGLADAPVKDAASVSKP 282
>gi|449443257|ref|XP_004139396.1| PREDICTED: transcription factor bHLH66-like [Cucumis sativus]
gi|449523179|ref|XP_004168602.1| PREDICTED: transcription factor bHLH66-like [Cucumis sativus]
Length = 421
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 226/468 (48%), Positives = 275/468 (58%), Gaps = 104/468 (22%)
Query: 26 SQIHQSATFDPTSQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLS 85
+ + +TF S DDFL+Q+LS++PS PW + P L
Sbjct: 35 TSLFHPSTF---SSDDFLDQILSTVPS--------PWEL----------------PPGLP 67
Query: 86 DETAPSTTQENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIM 145
+ P + +N + + G + + AAK M QQQ++
Sbjct: 68 SQPLPPSNPDN----------------------VEFHVG---DTTPAAKMAMSLLQQQLL 102
Query: 146 MAAARGGIGLPLSLGNGGD------NDIVDV-----SSFKSQQGGD-GSV-QALYNGFTG 192
M+ RG + P S G+ N++V+V SSFK D GSV +L+N F G
Sbjct: 103 MS--RGIV--PASAGDDCGLLPMPGNNVVEVDGSSSSSFKCPNPTDHGSVVPSLFNEFAG 158
Query: 193 SLHGSTQP--QHFHHLQVRS---MPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQ 247
L+ ST P Q+ + Q S +P FG GPV T A S+ GG P Q
Sbjct: 159 FLN-STGPGSQNQNQSQGNSNSQIPN--FG--GPVSASTPPPAGPSSCGGAAAAAAPGQ- 212
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P+QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL
Sbjct: 213 PRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 272
Query: 308 QLQVKVLSMSRLGGAAAVAP-LVADMSSEGGGGGDCIQANGRNPNGAQTT----SANDSL 362
QLQVKVLS+SRLGGA A P + D+S+E GG +C Q+NG N QT+ S+ND++
Sbjct: 273 QLQVKVLSVSRLGGATAAMPSRLPDLSTE--GGTECNQSNGTNGASGQTSTGAPSSNDAM 330
Query: 363 TVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNG 422
TVTEHQV KLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSR PI ++
Sbjct: 331 TVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSR-PITAS-------- 381
Query: 423 NPHHNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
+ G+ PTSPS+S LTVQS +GNG D V+D SVS+P
Sbjct: 382 --------KGGGDPPTSPSLSALTVQSTALGNGTVDKPVRDTLSVSRP 421
>gi|357153670|ref|XP_003576528.1| PREDICTED: uncharacterized protein LOC100826168 [Brachypodium
distachyon]
Length = 458
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 233/466 (50%), Positives = 268/466 (57%), Gaps = 76/466 (16%)
Query: 39 QDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNV 98
DDFL+QM SLP +W +L + K P D + +
Sbjct: 35 HDDFLDQMFGSLPPSAWHELAT-------------AAAAAKPPED-------DSGMQQQQ 74
Query: 99 PAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMA----------- 147
G +DES++LAS++RQ+QISG G G+ AAK M+ QQ + A
Sbjct: 75 QFGGPYDESVMLASRLRQNQISGGGGPGSGAGGAAKQMVLQQLADLRQAGHGHGHHMMLQ 134
Query: 148 --AARG--GIGLPLSLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHF 203
RG G+ LPL+LGNGG V + K+ G ++ GF GSL Q
Sbjct: 135 GGTGRGDSGMILPLTLGNGGSGGDVQ-ALLKAAANSAGGEAGVFGGFAGSLQQQQQHFQP 193
Query: 204 HHLQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPH 263
H Q MP QTFG + A G GGGGG P+QRVRARRGQATDPH
Sbjct: 194 HPQQTAPMPNQTFGG----GAASGGGAQPQAGAGGGGGGGTQAPPRQRVRARRGQATDPH 249
Query: 264 SIAERLRRERIAERMKALQELVPNANK---TDKASMLDEIIDYVKFLQLQVK----VLSM 316
SIAERLRRERIAERMKALQELVPNANK TDKASMLDEIIDYVKFLQLQVK VLSM
Sbjct: 250 SIAERLRRERIAERMKALQELVPNANKWMQTDKASMLDEIIDYVKFLQLQVKASMHVLSM 309
Query: 317 SRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEED 376
SRLGGAAAVAPLVADMSSE G NG + +DSLTVTE QVAKLMEED
Sbjct: 310 SRLGGAAAVAPLVADMSSE---------GRGGAGNGGGPAAESDSLTVTEQQVAKLMEED 360
Query: 377 MGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHH-NPLLQSNGE 435
MG+AMQYLQGKGLCLMP+SLA+AIS+ATC R P + + PHH N + Q +
Sbjct: 361 MGAAMQYLQGKGLCLMPVSLASAISSATCQLRPP--------SGHAFPHHLNAMRQMHDA 412
Query: 436 G-PTSPSMSVLTVQSATM-GNGGADGSV---------KDAASVSKP 470
P SPSMSVLT QSA + GN G + KDAASVSKP
Sbjct: 413 AVPASPSMSVLTAQSAMVPGNNGGACAADGGAEASHPKDAASVSKP 458
>gi|224088258|ref|XP_002308393.1| predicted protein [Populus trichocarpa]
gi|222854369|gb|EEE91916.1| predicted protein [Populus trichocarpa]
Length = 184
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 163/200 (81%), Positives = 164/200 (82%), Gaps = 23/200 (11%)
Query: 278 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGG 337
MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSE
Sbjct: 1 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSE-- 58
Query: 338 GGGDCIQAN------GRNPNGAQTTSAND-SLTVTEHQVAKLMEEDMGSAMQYLQGKGLC 390
GGDCIQAN R NG QT S ND SLTVTEHQVAKLMEEDMGSAMQYLQGKGLC
Sbjct: 59 AGGDCIQANANGGSIARTTNGNQTASTNDSSLTVTEHQVAKLMEEDMGSAMQYLQGKGLC 118
Query: 391 LMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSA 450
LMPISLATAISTATCH+R I S HNPLLQSNGEGPTSPSMSVLTVQSA
Sbjct: 119 LMPISLATAISTATCHNRTSGIINS----------HNPLLQSNGEGPTSPSMSVLTVQSA 168
Query: 451 TMGNGGADGSVKDAASVSKP 470
TMGNG A KDAASVSKP
Sbjct: 169 TMGNGVA----KDAASVSKP 184
>gi|93280154|gb|ABF06705.1| Joka8 [Nicotiana plumbaginifolia]
Length = 360
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 203/351 (57%), Positives = 236/351 (67%), Gaps = 34/351 (9%)
Query: 34 FDPTS-QDDFLEQMLSSLPSCS--WTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAP 90
+DPTS DDFL+Q+LSS+PS S W DL W +P++++ + D+ P
Sbjct: 29 YDPTSSHDDFLDQILSSVPSSSPCWPDLSKSW-----DPHHHHLSPPLPPNPSSGDDHQP 83
Query: 91 STTQENNVPAGFQFDE--SMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAA 148
+ N FQ+D+ S LA+K+RQHQI+G G G AAAK ++ QQQ +
Sbjct: 84 PPS---NPLQHFQYDDQSSSFLAAKLRQHQITGGGGGGGGAVAAAKALLLQQQLLLSRTL 140
Query: 149 ARGGIGLPLSLGNGGDNDIVDVSSFKSQQGG------DGSVQALYNGFTGSL-HGSTQPQ 201
A G+ P G GDN +++ Q G D SVQAL+NGFTGSL S+QPQ
Sbjct: 141 AGNGLRSPT--GASGDNGFLNMLGNGDQNDGVGNPANDSSVQALFNGFTGSLGQNSSQPQ 198
Query: 202 HFHHLQVRSMPGQTFGAPG--PVMNQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQ 258
HFHH Q +M Q+FGAP P MNQT A ASGS GGG TPA QPKQ RVRARRGQ
Sbjct: 199 HFHHPQGGTMQAQSFGAPATAPAMNQTPA-ASGS----AGGGTTPAAQPKQQRVRARRGQ 253
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318
ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR
Sbjct: 254 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 313
Query: 319 LGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQV 369
LGGAAAVAPLVADMSSEG G G+ + NG ++S NDS+TVTEHQV
Sbjct: 314 LGGAAAVAPLVADMSSEGRGEGNGGRGG----NGTASSSNNDSMTVTEHQV 360
>gi|295913203|gb|ADG57860.1| transcription factor [Lycoris longituba]
Length = 204
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/204 (75%), Positives = 162/204 (79%), Gaps = 27/204 (13%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEII YVKFLQ
Sbjct: 27 RQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIGYVKFLQ 86
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGAAAVAPLVAD+SSE G NG T S ND+LTVTEHQ
Sbjct: 87 LQVKVLSMSRLGGAAAVAPLVADISSEVRNGN----------NGTVTASTNDTLTVTEHQ 136
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSR-NPIISTSNNNNNNGNPHHN 427
V KLMEEDMGSAMQYLQGKGLCLMPISLA+AISTATCH R NP +NN NG
Sbjct: 137 VVKLMEEDMGSAMQYLQGKGLCLMPISLASAISTATCHPRVNP-----XHNNPNG----- 186
Query: 428 PLLQSNGEGPTSPSMSVLTVQSAT 451
G+ P+SP++SVLTVQSA
Sbjct: 187 ------GDAPSSPNLSVLTVQSAV 204
>gi|414589493|tpg|DAA40064.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 471
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 158/248 (63%), Positives = 171/248 (68%), Gaps = 37/248 (14%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P+QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEI+DYVKFL
Sbjct: 236 PRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIVDYVKFL 295
Query: 308 QLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEH 367
QLQVKVLSMSRLGGAAAVAPLVADMSSEG GG A ++D L VTE
Sbjct: 296 QLQVKVLSMSRLGGAAAVAPLVADMSSEGRGG------------VAVAAGSDDGLAVTEQ 343
Query: 368 QVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPI---------ISTSNNN 418
QVAKLMEEDMG+AMQYLQGKGLCLMP+SLA+AIS+ATCH R P+ + +
Sbjct: 344 QVAKLMEEDMGTAMQYLQGKGLCLMPVSLASAISSATCHMRPPVGGPGLGVAAAAAHHMA 403
Query: 419 NNNGNPH--HNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSV--------------K 462
PH + P SPSMSVLT QSA NG G+ K
Sbjct: 404 AMRLPPHAMNGGAGAGADAVPASPSMSVLTAQSAMAPNGAGGGTDGEGSHSQQQQRHHPK 463
Query: 463 DAASVSKP 470
DAASVSKP
Sbjct: 464 DAASVSKP 471
>gi|226496023|ref|NP_001141950.1| uncharacterized protein LOC100274099 [Zea mays]
gi|223945379|gb|ACN26773.1| unknown [Zea mays]
gi|414589494|tpg|DAA40065.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 470
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 158/248 (63%), Positives = 171/248 (68%), Gaps = 37/248 (14%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P+QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEI+DYVKFL
Sbjct: 235 PRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIVDYVKFL 294
Query: 308 QLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEH 367
QLQVKVLSMSRLGGAAAVAPLVADMSSEG GG A ++D L VTE
Sbjct: 295 QLQVKVLSMSRLGGAAAVAPLVADMSSEGRGG------------VAVAAGSDDGLAVTEQ 342
Query: 368 QVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPI---------ISTSNNN 418
QVAKLMEEDMG+AMQYLQGKGLCLMP+SLA+AIS+ATCH R P+ + +
Sbjct: 343 QVAKLMEEDMGTAMQYLQGKGLCLMPVSLASAISSATCHMRPPVGGPGLGVAAAAAHHMA 402
Query: 419 NNNGNPH--HNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSV--------------K 462
PH + P SPSMSVLT QSA NG G+ K
Sbjct: 403 AMRLPPHAMNGGAGAGADAVPASPSMSVLTAQSAMAPNGAGGGTDGEGSHSQQQQRHHPK 462
Query: 463 DAASVSKP 470
DAASVSKP
Sbjct: 463 DAASVSKP 470
>gi|297825371|ref|XP_002880568.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297326407|gb|EFH56827.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 353
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 175/314 (55%), Positives = 203/314 (64%), Gaps = 61/314 (19%)
Query: 182 SVQALYNGFTGSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQ-------ASGST 234
SV ALYN F+ S GS +FH Q G+ G +MNQ AS ST
Sbjct: 76 SVHALYNSFSAS--GSLP--NFHIPQ---------GSGGGLMNQQGQTQTQTQPQASAST 122
Query: 235 GGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKA 294
GG P Q + +VRARRGQATDPHSIAERLRRERIAERMKALQELVPN NKTDKA
Sbjct: 123 ATGGTVAVPP--QSRTKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKA 180
Query: 295 SMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQ 354
SMLDEIIDYVKFLQLQVKVLSMSRLGGAA+V+ + +S GG G+ A G+Q
Sbjct: 181 SMLDEIIDYVKFLQLQVKVLSMSRLGGAASVS---SQLSEAGGSHGNASSAMA---GGSQ 234
Query: 355 TT-SANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIIS 413
T ++NDS+T+TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNP+I
Sbjct: 235 TAGNSNDSITMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLI- 293
Query: 414 TSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSA-----------------TMGNGG 456
P ++ GP+SP++S +T+QS + G
Sbjct: 294 --------------PGPVADVGGPSSPNLSGMTIQSTNTTTMGNGNGKLNGNGNGVTKGS 339
Query: 457 ADGSVKDAASVSKP 470
+ +VK+A SVSKP
Sbjct: 340 SSIAVKEAVSVSKP 353
>gi|15224109|ref|NP_180003.1| transcription factor bHLH66 [Arabidopsis thaliana]
gi|75315918|sp|Q9ZUG9.1|BH066_ARATH RecName: Full=Transcription factor bHLH66; AltName: Full=Basic
helix-loop-helix protein 66; Short=AtbHLH66; Short=bHLH
66; AltName: Full=Transcription factor EN 95; AltName:
Full=bHLH transcription factor bHLH066
gi|4115386|gb|AAD03387.1| unknown protein [Arabidopsis thaliana]
gi|51970882|dbj|BAD44133.1| putative bHLH transcription factor (bHLH066) [Arabidopsis thaliana]
gi|111074492|gb|ABH04619.1| At2g24260 [Arabidopsis thaliana]
gi|330252457|gb|AEC07551.1| transcription factor bHLH66 [Arabidopsis thaliana]
Length = 350
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 175/312 (56%), Positives = 204/312 (65%), Gaps = 62/312 (19%)
Query: 182 SVQALYNGFT--GSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQ-------ASG 232
SV ALYNGF+ GSL PQ G+ G +MNQ AS
Sbjct: 76 SVHALYNGFSVAGSLPNFQIPQ---------------GSGGGLMNQQGQTQTQTQPQASA 120
Query: 233 STGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD 292
ST GG P Q + ++RARRGQATDPHSIAERLRRERIAERMKALQELVPN NKTD
Sbjct: 121 STATGGTVAAPP--QSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTD 178
Query: 293 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNG 352
KASMLDEIIDYVKFLQLQVKVLSMSRLGGAA+V+ + +S GG G+ A+ G
Sbjct: 179 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVS---SQISEAGGSHGN---ASSAMVGG 232
Query: 353 AQTT-SANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPI 411
+QT ++NDS+T+TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNP+
Sbjct: 233 SQTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPL 292
Query: 412 ISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATM----GNGGADG-------- 459
I P ++ GP+ P++S +T+QS + GNG +G
Sbjct: 293 I---------------PGAVADVGGPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSS 337
Query: 460 --SVKDAASVSK 469
+VK+A SVSK
Sbjct: 338 SIAVKEAVSVSK 349
>gi|51970922|dbj|BAD44153.1| putative bHLH transcription factor (bHLH066) [Arabidopsis thaliana]
Length = 350
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 174/312 (55%), Positives = 204/312 (65%), Gaps = 62/312 (19%)
Query: 182 SVQALYNGFT--GSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQ-------ASG 232
SV ALYNGF+ GSL PQ G+ G +MNQ AS
Sbjct: 76 SVHALYNGFSVAGSLPNFQIPQ---------------GSGGGLMNQQGQTQTQTQPQASA 120
Query: 233 STGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD 292
ST GG P Q + ++RARRGQATDPHSIAERLRRERIAERMKALQELVPN NKTD
Sbjct: 121 STATGGTVAAPP--QSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTD 178
Query: 293 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNG 352
KASMLDEIIDYVKFLQLQVKVLSMSRLGGAA+V+ + +S GG G+ A+ G
Sbjct: 179 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVS---SQISEAGGSHGN---ASSAMVGG 232
Query: 353 AQTT-SANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPI 411
+QT ++NDS+T+TEHQVAKLMEEDMGSAMQYLQG+GLCLMPISLATAISTATCHSRNP+
Sbjct: 233 SQTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGEGLCLMPISLATAISTATCHSRNPL 292
Query: 412 ISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATM----GNGGADG-------- 459
I P ++ GP+ P++S +T+QS + GNG +G
Sbjct: 293 I---------------PGAVADVGGPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSS 337
Query: 460 --SVKDAASVSK 469
+VK+A SVSK
Sbjct: 338 SIAVKEAVSVSK 349
>gi|20127072|gb|AAM10955.1|AF488599_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 350
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 174/312 (55%), Positives = 204/312 (65%), Gaps = 62/312 (19%)
Query: 182 SVQALYNGFT--GSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQ-------ASG 232
SV ALYNGF+ GSL PQ G+ G +MNQ AS
Sbjct: 76 SVHALYNGFSVAGSLPNFQIPQ---------------GSGGGLMNQQGQTQTQTQPQASA 120
Query: 233 STGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD 292
ST GG P Q + ++RARRGQATDPHSIAERLRRERIAERMKALQELVPN NKTD
Sbjct: 121 STATGGTVAAPP--QSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTD 178
Query: 293 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNG 352
KASMLDEIIDYV+FLQLQVKVLSMSRLGGAA+V+ + +S GG G+ A+ G
Sbjct: 179 KASMLDEIIDYVEFLQLQVKVLSMSRLGGAASVS---SQISEAGGSHGN---ASSAMVGG 232
Query: 353 AQTT-SANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPI 411
+QT ++NDS+T+TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNP+
Sbjct: 233 SQTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPL 292
Query: 412 ISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATM----GNGGADG-------- 459
I P ++ GP+ P++S +T+QS + GNG +G
Sbjct: 293 I---------------PGAVADVGGPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSS 337
Query: 460 --SVKDAASVSK 469
+VK+A SVSK
Sbjct: 338 SIAVKEAVSVSK 349
>gi|297726953|ref|NP_001175840.1| Os09g0417400 [Oryza sativa Japonica Group]
gi|50253024|dbj|BAD29274.1| bHLH transcription factor PTF1-like protein [Oryza sativa Japonica
Group]
gi|255678901|dbj|BAH94568.1| Os09g0417400 [Oryza sativa Japonica Group]
Length = 499
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 160/260 (61%), Positives = 173/260 (66%), Gaps = 45/260 (17%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK---TDKASMLDEIIDYVK 305
+QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK TDKASMLDEIIDYVK
Sbjct: 247 RQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVK 306
Query: 306 FLQLQVK----------VLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQT 355
FLQLQVK VLSMSRLGGAAAVAPLVADMSSEG G GA
Sbjct: 307 FLQLQVKASTYTKLLIHVLSMSRLGGAAAVAPLVADMSSEGR-------GGGAANGGAPA 359
Query: 356 TSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTS 415
+ +DSLTVTE QVAKLMEEDMG+AMQYLQGKGLCLMPISLA+AIS+ATCH R P+++ +
Sbjct: 360 AAGSDSLTVTEQQVAKLMEEDMGTAMQYLQGKGLCLMPISLASAISSATCHLRPPVVAAA 419
Query: 416 NNNNNNGNPH--------------------HNPLLQSNGEGPTSPSMSVLTVQS-----A 450
H P L ++G P SPSMSVLT QS
Sbjct: 420 QQFPAGLGAAAAAAHHHQLSAAAAAAAMRGHLPGLNADGSVPASPSMSVLTAQSAMANGG 479
Query: 451 TMGNGGADGSVKDAASVSKP 470
G +KDAASVSKP
Sbjct: 480 GGAADGEGSQLKDAASVSKP 499
>gi|218202150|gb|EEC84577.1| hypothetical protein OsI_31377 [Oryza sativa Indica Group]
Length = 414
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 161/260 (61%), Positives = 174/260 (66%), Gaps = 39/260 (15%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ
Sbjct: 156 RQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 215
Query: 309 LQVK----------VLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSA 358
LQVK VLSMSRLGGAAAVAPLVADMSSEG GGG A +
Sbjct: 216 LQVKASTYTKLLIHVLSMSRLGGAAAVAPLVADMSSEGRGGGAANGGAPAA-AAAAAAAG 274
Query: 359 NDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNN 418
+DSLTVTE QVAKLMEEDMG+AMQYLQGKGLCLMPISLA+AIS+ATCH R P+++ +
Sbjct: 275 SDSLTVTEQQVAKLMEEDMGTAMQYLQGKGLCLMPISLASAISSATCHLRPPVVAAAAAQ 334
Query: 419 NNNGNPH-----------------------HNPLLQSNGEGPTSPSMSVLTVQS-----A 450
H P L ++G P SPSMSVLT QS
Sbjct: 335 QFPAGLGAAAAAAHHHQLSAAAAAAAAMRGHLPGLNADGSVPASPSMSVLTAQSAMANGG 394
Query: 451 TMGNGGADGSVKDAASVSKP 470
G +KDAASVSKP
Sbjct: 395 GGAADGEGSQLKDAASVSKP 414
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 18/81 (22%)
Query: 40 DDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNVP 99
DDFL+QMLSSLP +W DL + D ++++ ++ Q
Sbjct: 34 DDFLDQMLSSLPPSAWPDLAAGKAAEDDAEGMHHHHHHHHQQ------------------ 75
Query: 100 AGFQFDESMILASKMRQHQIS 120
G +DES +LAS++RQHQIS
Sbjct: 76 FGGPYDESAMLASRLRQHQIS 96
>gi|226492543|ref|NP_001151181.1| LOC100284814 [Zea mays]
gi|195644858|gb|ACG41897.1| BHLH transcription factor [Zea mays]
Length = 390
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 196/432 (45%), Positives = 238/432 (55%), Gaps = 67/432 (15%)
Query: 38 SQDDFLEQMLSSLPSCSWTDL---KSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQ 94
+QDDF +QMLS+LP+ +W+DL KSPW + A + T+
Sbjct: 14 AQDDFFDQMLSTLPA-AWSDLGSGKSPWEL---------------------PAAAGAVTE 51
Query: 95 ENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIG 154
+ DE +LAS++R HQI G G + G +
Sbjct: 52 DAAA-----LDEPALLASRLRHHQIGG----GEKPLMLHLSDLHGLGAGAGAGDDAGFMP 102
Query: 155 LPLSLGNGGDNDIVDVSSFKS--QQGGDGSVQALYNGF--TGSLHGST--QPQHFHHLQV 208
LPL + +D+ ++FKS GGD + LYNGF G++H + QP F Q
Sbjct: 103 LPLFTQHLARDDVD--AAFKSPNAAGGD---RELYNGFGAAGNMHTAAVHQPPPFG--QG 155
Query: 209 RSMPG-QTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAE 267
SMP Q+FG GP A G+ +QR RA+RGQATDPHSIAE
Sbjct: 156 GSMPAAQSFGGGGPAPAAGAASGGGAP------------PRQQRQRAKRGQATDPHSIAE 203
Query: 268 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 327
RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA AV
Sbjct: 204 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATAVGT 263
Query: 328 LVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGK 387
LVA ++SEG G GD +G+ SL VTE QVA+LMEEDMG+AMQYLQGK
Sbjct: 264 LVAGIASEGNGSGDGTSDSGKGNAANGENGGGGSLQVTEQQVARLMEEDMGTAMQYLQGK 323
Query: 388 GLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTV 447
GLCLMPISLA+AIS+AT S S + G H +G P SP +
Sbjct: 324 GLCLMPISLASAISSATWPSLLSRPSMGAMGDARGPLH-------DGGSPASPPLVNCGD 376
Query: 448 QSATMGNGGADG 459
S+T+ + GA G
Sbjct: 377 DSSTVKDAGAGG 388
>gi|357118504|ref|XP_003560994.1| PREDICTED: transcription factor bHLH66-like [Brachypodium
distachyon]
Length = 388
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 188/393 (47%), Positives = 212/393 (53%), Gaps = 85/393 (21%)
Query: 38 SQDDFLEQMLSSLPSCSWTDL----KSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTT 93
+QDDF +QMLS+LPS W DL KSPW + DLS
Sbjct: 12 AQDDFFDQMLSTLPSA-WGDLGAAGKSPWELA-------------AGAEDLS-------- 49
Query: 94 QENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGI 153
FDES +LAS++RQHQI G M+Q Q GG
Sbjct: 50 ---------AFDESALLASRLRQHQIGGGE---------KPVMLQLTDLQRQQGEESGGF 91
Query: 154 GLPLSLGNGGDNDIVDVSSFKS-QQGGDGSVQALYNGFTGSLHG------------STQP 200
PL L D S S ++ DG ++ N TG H + QP
Sbjct: 92 S-PLPL-------FTDRSPPPSAREDMDGGFKSPNNNATGGDHAMFNGFGAHGGAGAVQP 143
Query: 201 QHFHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQAT 260
Q SM GQ+FG T A + GGG P +Q RVRARRGQAT
Sbjct: 144 PFG---QGGSMSGQSFGG-------TAASGGTAAPASSGGGAAPPRQ--TRVRARRGQAT 191
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 320
DPHSIAERLRRERIAERMK+LQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG
Sbjct: 192 DPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 251
Query: 321 GAAAVAPLVADMSSEGGGG--------GDCIQANGRNPNGAQTTSANDSLTVTEHQVAKL 372
GAA +APLVA MSSE N NG + + L VTE QVAK+
Sbjct: 252 GAAGMAPLVASMSSEANSSNTKSGSGAAAAAATANGNGNGGEKSGGGAGLRVTEQQVAKM 311
Query: 373 MEEDMGSAMQYLQGKGLCLMPISLATAISTATC 405
MEEDMG+AMQYLQGKGLCLMPISLA+AIS+AT
Sbjct: 312 MEEDMGTAMQYLQGKGLCLMPISLASAISSATT 344
>gi|118488234|gb|ABK95936.1| unknown [Populus trichocarpa]
Length = 283
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 179/315 (56%), Positives = 215/315 (68%), Gaps = 55/315 (17%)
Query: 1 MQPCSSGGEMQGISSLLSNGSH---------EQQSQIHQSATFDP--TSQDDFLEQMLSS 49
MQPCS EMQGI+SLL+ S + SQI Q++ FDP +S DDFLEQMLS+
Sbjct: 1 MQPCSR--EMQGINSLLNPSSQIPLQDLQNQQNPSQI-QNSHFDPNSSSNDDFLEQMLSN 57
Query: 50 LPSCSWTDLKSPWGV-VDLNPNNNNNNINNKQPRDLSDETAPSTTQENNVPAGFQFDESM 108
+P CSW DLKSPW + + +N N+++N+I +PRDLSDETAPS T +N+ FDES+
Sbjct: 58 IPPCSWPDLKSPWDLTMPINNNDSSNSI--AKPRDLSDETAPSNTDNSNLGFHNNFDESV 115
Query: 109 ILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPLSLGNGGDNDIV 168
ILASK+RQHQISG G+ +AAAK M+QQQ ++MAAARG LP ND++
Sbjct: 116 ILASKLRQHQISGGGGA----AAAAKMMLQQQ---LLMAAARGV--LP-------QNDVI 159
Query: 169 DVSSFKSQQGGDGSVQALYNGF-TGSLHGSTQP-----QHFHHLQVRSMPGQTFGAPGP- 221
D SSFK GGDGS+Q L+NGF GS++G+ Q QHF+H Q +M Q FGA G
Sbjct: 160 DGSSFK---GGDGSMQGLFNGFGAGSMNGTGQASNQSMQHFNHPQGGAMQAQNFGAQGAA 216
Query: 222 ---VMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERM 278
VMNQ QASGS GG PAQ P+QRVRARRGQATDPHSIAERLRRERIAERM
Sbjct: 217 TTAVMNQ--PQASGSNGGA------PAQ-PRQRVRARRGQATDPHSIAERLRRERIAERM 267
Query: 279 KALQELVPNANKTDK 293
KALQELVPNANK +
Sbjct: 268 KALQELVPNANKVKQ 282
>gi|2980768|emb|CAA18195.1| putative protein [Arabidopsis thaliana]
gi|7270000|emb|CAB79816.1| putative protein [Arabidopsis thaliana]
Length = 367
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 161/287 (56%), Positives = 182/287 (63%), Gaps = 60/287 (20%)
Query: 185 ALYNGF-TGSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNT 243
AL+NGF TGSL FH Q G+ G Q+QA AS +TGG T
Sbjct: 140 ALFNGFSTGSLP-------FHLPQ---------GSGGQTQTQSQATASATTGGA-----T 178
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
Q K +VRARRGQATDPHSIAERLRRERIAERMK+LQELVPN NKTDKASMLDEIIDY
Sbjct: 179 AQPQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDY 238
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLT 363
VKFLQLQVKVLSMSRLGGAA+ + + SE GG + TS++
Sbjct: 239 VKFLQLQVKVLSMSRLGGAASASSQI----SEDAGGSH------------ENTSSSGEAK 282
Query: 364 VTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGN 423
+TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLAT ISTATC SR+P + +
Sbjct: 283 MTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDTG------- 335
Query: 424 PHHNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
P SP++S V + GNG + +VKDA SVSKP
Sbjct: 336 ------------VPLSPNLSTTIVAN---GNGSSLVTVKDAPSVSKP 367
>gi|30688869|ref|NP_194827.2| transcription factor bHLH69 [Arabidopsis thaliana]
gi|218563529|sp|Q8S3D5.2|BH069_ARATH RecName: Full=Transcription factor bHLH69; AltName: Full=Basic
helix-loop-helix protein 69; Short=AtbHLH69; Short=bHLH
69; AltName: Full=Transcription factor EN 94; AltName:
Full=bHLH transcription factor bHLH069
gi|225898837|dbj|BAH30549.1| hypothetical protein [Arabidopsis thaliana]
gi|332660437|gb|AEE85837.1| transcription factor bHLH69 [Arabidopsis thaliana]
Length = 310
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 161/287 (56%), Positives = 182/287 (63%), Gaps = 60/287 (20%)
Query: 185 ALYNGF-TGSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNT 243
AL+NGF TGSL FH Q G+ G Q+QA AS +TGG T
Sbjct: 83 ALFNGFSTGSLP-------FHLPQ---------GSGGQTQTQSQATASATTGGA-----T 121
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
Q K +VRARRGQATDPHSIAERLRRERIAERMK+LQELVPN NKTDKASMLDEIIDY
Sbjct: 122 AQPQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDY 181
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLT 363
VKFLQLQVKVLSMSRLGGAA+ + + SE GG + TS++
Sbjct: 182 VKFLQLQVKVLSMSRLGGAASASSQI----SEDAGGSH------------ENTSSSGEAK 225
Query: 364 VTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGN 423
+TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLAT ISTATC SR+P + +
Sbjct: 226 MTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDTGV------ 279
Query: 424 PHHNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
P SP++S V + GNG + +VKDA SVSKP
Sbjct: 280 -------------PLSPNLSTTIVAN---GNGSSLVTVKDAPSVSKP 310
>gi|20127075|gb|AAM10956.1|AF488601_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 310
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 160/287 (55%), Positives = 181/287 (63%), Gaps = 60/287 (20%)
Query: 185 ALYNGF-TGSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNT 243
AL+NGF TGSL FH Q G+ G Q+QA AS +TGG T
Sbjct: 83 ALFNGFSTGSLP-------FHLPQ---------GSGGQTQTQSQATASATTGGA-----T 121
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
Q K +VRARRGQATDPHSIAERLRRERIAERMK+LQELVPN NKTDKASMLDEIIDY
Sbjct: 122 AQPQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDY 181
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLT 363
VKFLQLQVKVLSMSRLGGAA+ + + SE GG + TS++
Sbjct: 182 VKFLQLQVKVLSMSRLGGAASASSQI----SEDAGGSH------------ENTSSSGEAK 225
Query: 364 VTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGN 423
+TEHQ AKLMEEDMGSAMQYLQGKGLCLMPISLAT ISTATC SR+P + +
Sbjct: 226 MTEHQXAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDTGV------ 279
Query: 424 PHHNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
P SP++S V + GNG + +VKDA SVSKP
Sbjct: 280 -------------PLSPNLSTTIVAN---GNGSSLVTVKDAPSVSKP 310
>gi|297796719|ref|XP_002866244.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297312079|gb|EFH42503.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 297
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 143/221 (64%), Positives = 160/221 (72%), Gaps = 24/221 (10%)
Query: 200 PQHFHHLQVRSMPGQTFGAPGPVMNQ---TQAQASGSTGGGGGGGNTPAQQPKQRVRARR 256
P FHH Q + GP M QAQ + ST + P + K RVRARR
Sbjct: 59 PDQFHHPQ---------ESGGPTMGSQEGLQAQGTVSTT------SAPVVRQKPRVRARR 103
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
GQATDPHSIAERLRRERIAERMK+LQELVPN NKTDKASMLDEII+YV+FLQLQVKVLSM
Sbjct: 104 GQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKVLSM 163
Query: 317 SRLGGAAAVAPLVADMSSEGGGGGDCIQA--NGRNPNGAQTTSANDSLTVTEHQVAKLME 374
SRLGGA AV P + +S+E GG + + A NG N NG T S+N+SL TE +VAKLME
Sbjct: 164 SRLGGAGAVGPRLNGLSAEAGGRLNALTAPCNGLNGNGNVTGSSNESLRSTEQRVAKLME 223
Query: 375 EDMGSAMQYLQGKGLCLMPISLATAISTATCHSR----NPI 411
EDMGSAMQYLQGKGLCLMPISLATAIS++T HSR NPI
Sbjct: 224 EDMGSAMQYLQGKGLCLMPISLATAISSSTTHSRGSLFNPI 264
>gi|297798868|ref|XP_002867318.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297313154|gb|EFH43577.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/224 (62%), Positives = 157/224 (70%), Gaps = 38/224 (16%)
Query: 247 QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKF 306
Q K +VRARRGQATDPHSIAERLRRERIAERMK+LQELVPN NKTDKASMLDEIIDYVKF
Sbjct: 123 QTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKF 182
Query: 307 LQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTE 366
LQLQVKVLSMSRLGGAA+V+ + SE GG + TS++ +TE
Sbjct: 183 LQLQVKVLSMSRLGGAASVSSQI----SEDAGGSH------------ENTSSSGEAKMTE 226
Query: 367 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHH 426
HQVAKLMEEDMGSAMQYLQGKGLCLMPISLAT ISTATC SRNP + +
Sbjct: 227 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRNPFVKDTG---------- 276
Query: 427 NPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
P SP++S TV + GNG + +VKDA SVSKP
Sbjct: 277 ---------VPLSPNLSTTTVAN---GNGSSLVTVKDAPSVSKP 308
>gi|15242922|ref|NP_200609.1| transcription factor bHLH82 [Arabidopsis thaliana]
gi|75311535|sp|Q9LSQ3.1|BH082_ARATH RecName: Full=Transcription factor bHLH82; AltName: Full=Basic
helix-loop-helix protein 82; Short=AtbHLH82; Short=bHLH
82; AltName: Full=Transcription factor EN 96; AltName:
Full=bHLH transcription factor bHLH082
gi|8885595|dbj|BAA97525.1| unnamed protein product [Arabidopsis thaliana]
gi|332009604|gb|AED96987.1| transcription factor bHLH82 [Arabidopsis thaliana]
Length = 297
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 143/231 (61%), Positives = 163/231 (70%), Gaps = 24/231 (10%)
Query: 200 PQHFHHLQVRSMPGQTFGAPGPVMNQ---TQAQASGSTGGGGGGGNTPAQQPKQRVRARR 256
P FHH Q + GP M Q Q + ST + P + K RVRARR
Sbjct: 59 PDQFHHPQ---------ESGGPTMGSQEGLQPQGTVSTT------SAPVVRQKPRVRARR 103
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
GQATDPHSIAERLRRERIAERMK+LQELVPN NKTDKASMLDEII+YV+FLQLQVKVLSM
Sbjct: 104 GQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKVLSM 163
Query: 317 SRLGGAAAVAPLVADMSSEGGGGGDCIQA--NGRNPNGAQTTSANDSLTVTEHQVAKLME 374
SRLGGA +V P + +S+E GG + + A NG N NG T S+N+SL TE +VAKLME
Sbjct: 164 SRLGGAGSVGPRLNGLSAEAGGRLNALTAPCNGLNGNGNATGSSNESLRSTEQRVAKLME 223
Query: 375 EDMGSAMQYLQGKGLCLMPISLATAISTATCHSR----NPIISTSNNNNNN 421
EDMGSAMQYLQGKGLCLMPISLATAIS++T HSR NPI S ++N
Sbjct: 224 EDMGSAMQYLQGKGLCLMPISLATAISSSTTHSRGSLFNPISSAVAAEDSN 274
>gi|242049278|ref|XP_002462383.1| hypothetical protein SORBIDRAFT_02g024750 [Sorghum bicolor]
gi|241925760|gb|EER98904.1| hypothetical protein SORBIDRAFT_02g024750 [Sorghum bicolor]
Length = 466
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/248 (61%), Positives = 164/248 (66%), Gaps = 39/248 (15%)
Query: 247 QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKF 306
Q +QR RA RGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKF
Sbjct: 234 QHRQRERAWRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKF 293
Query: 307 LQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTE 366
LQLQ VLSMSRLGGAAAVAPLVADMSSE A ++ L VTE
Sbjct: 294 LQLQ--VLSMSRLGGAAAVAPLVADMSSE----------GRGGAGAAAAAGSDGGLAVTE 341
Query: 367 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGN--- 423
QVAKLMEEDMG+AMQYLQGKGLCLMP+SLA+AIS+ATCH R P+ +
Sbjct: 342 QQVAKLMEEDMGTAMQYLQGKGLCLMPVSLASAISSATCHMRPPVGAAGLGVAAAAAHHM 401
Query: 424 -----PHHNPLLQSNGEG----PTSPSMSVLTVQSATMGNGGADGSV------------K 462
P H + G G P SPSMSVLT QSA GA G+ K
Sbjct: 402 AAMRLPPHG---MNGGAGADAVPASPSMSVLTAQSAMANGAGAGGADGDASHSQQQQHSK 458
Query: 463 DAASVSKP 470
DAASVSKP
Sbjct: 459 DAASVSKP 466
>gi|326533782|dbj|BAK05422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 362
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 175/376 (46%), Positives = 209/376 (55%), Gaps = 80/376 (21%)
Query: 27 QIHQSATFDPTSQDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSD 86
++H DDF EQMLS+LP+ +W +L S + P +L
Sbjct: 7 EMHGGGQGQGQGPDDFFEQMLSALPT-AWAELGS-----------------VRPPWELHA 48
Query: 87 ETAPSTTQENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMM 146
AP + PA FDES +LAS++R +QISG G G++ A +
Sbjct: 49 AGAPPPDAD---PA---FDESALLASRLRHNQISG--GGGDDKPPPALL-------PRLG 93
Query: 147 AAARGGIGLPLSLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGF-TGSLHGSTQPQHFHH 205
A G + LPL L D +S++ G+ QAL++GF LH + QP
Sbjct: 94 LDAGGFLPLPLPL-------FTD----RSREDLQGATQALFDGFGAAGLHAAAQP----- 137
Query: 206 LQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSI 265
FG G + + P+QR RARRGQATDPHSI
Sbjct: 138 ---------PFGQAGSMPPPAAQGGGAAA-----------APPRQRQRARRGQATDPHSI 177
Query: 266 AERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAV 325
AERLRRERIAERMKALQELVP+ANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAV
Sbjct: 178 AERLRRERIAERMKALQELVPSANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAV 237
Query: 326 APLVADMSSEGGGGGDCIQA----NGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAM 381
PL A +SSE G G+ + NG + NG T L TE QVA+LMEEDMG+AM
Sbjct: 238 GPLAAGLSSESSGNGNGTSSSGDGNGEDNNGGST------LWATEQQVARLMEEDMGTAM 291
Query: 382 QYLQGKGLCLMPISLA 397
QYLQGKGLCLMPISLA
Sbjct: 292 QYLQGKGLCLMPISLA 307
>gi|357137415|ref|XP_003570296.1| PREDICTED: uncharacterized protein LOC100827783 [Brachypodium
distachyon]
Length = 351
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/161 (75%), Positives = 135/161 (83%), Gaps = 2/161 (1%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+QRVRARRGQATDPHSIAERLRRERIAERMKALQELVP+ANKTDKASMLDEIIDYVKFLQ
Sbjct: 141 RQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDKASMLDEIIDYVKFLQ 200
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTS--ANDSLTVTE 366
+QVKVLSMSRLGGA AVAPLVA+MS E G GD ++G + N + +L TE
Sbjct: 201 VQVKVLSMSRLGGAGAVAPLVANMSPEDNGNGDGTSSSGWDGNAGNSDDNGGGSTLRATE 260
Query: 367 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHS 407
QV++LMEEDMGSAMQYLQGKGLCLMPISLA+ IS+AT S
Sbjct: 261 EQVSRLMEEDMGSAMQYLQGKGLCLMPISLASLISSATSPS 301
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 45/91 (49%), Gaps = 30/91 (32%)
Query: 39 QDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNV 98
QDDFL+QMLS+LP W +L SP K P +L PS
Sbjct: 13 QDDFLDQMLSALPPA-WAELASP-----------------KPPWEL-----PSA------ 43
Query: 99 PAGFQFDESMILASKMRQHQISGNTGSGNNN 129
AG DES +LAS++R HQISG G GN+
Sbjct: 44 -AGGDDDESTLLASRLRHHQISGGGGGGNDE 73
>gi|55773907|dbj|BAD72512.1| bHLH transcription factor PTF1-like [Oryza sativa Japonica Group]
Length = 420
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 178/388 (45%), Positives = 197/388 (50%), Gaps = 79/388 (20%)
Query: 38 SQDDFLEQMLSSLPSCSWTDL---------KSPWGVVDLNPNNNNNNINNKQPRDLSDET 88
+QDDF +QMLS+LPS W DL KSPW VD + +
Sbjct: 17 TQDDFFDQMLSTLPSA-WADLGGGGGGAAGKSPW-EVDPAAAAAASQV------------ 62
Query: 89 APSTTQENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAA 148
FDES +LAS++R HQI G G G + +Q
Sbjct: 63 ---------------FDESALLASRLRHHQIGGAGGGGGEKPVMLQLSELHRQAGGGEED 107
Query: 149 ARGGIG-LPLSLGNGGDNDIVDV-------SSFKSQQGGDGSVQALYNGFTGSLHGSTQP 200
G LPL D +V FKS G AL+NGF
Sbjct: 108 GSGAFSPLPLF------TDRTNVPPREEMEGGFKSPNAAAGGEHALFNGFGVHGGSGGAG 161
Query: 201 QHFHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTG---GGGGGGNTPAQQPKQRVRARRG 257
Q Q SM GQ+FG P ASG T GGGG P +Q QRVRARRG
Sbjct: 162 QPPFG-QGGSMSGQSFGGPA---------ASGGTAPVTSSGGGGTAPPRQ--QRVRARRG 209
Query: 258 QATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS 317
QATDPHSIAERLRRERIAERMK+LQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS
Sbjct: 210 QATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS 269
Query: 318 RLGGAAAVAPLVADM------------SSEGGGGGDCIQANGRNPNGAQTTSANDSLTVT 365
RLGGAA +APLVA M G G G + VT
Sbjct: 270 RLGGAAGMAPLVASMSSEGNSNGSSNGGGGKASKGGTGGEGGGGGGGGGGGGTGGGMRVT 329
Query: 366 EHQVAKLMEEDMGSAMQYLQGKGLCLMP 393
E QVAK+MEEDMG+AMQYLQGKGLCLMP
Sbjct: 330 EQQVAKMMEEDMGTAMQYLQGKGLCLMP 357
>gi|218197712|gb|EEC80139.1| hypothetical protein OsI_21931 [Oryza sativa Indica Group]
Length = 420
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 179/388 (46%), Positives = 198/388 (51%), Gaps = 79/388 (20%)
Query: 38 SQDDFLEQMLSSLPSCSWTDL---------KSPWGVVDLNPNNNNNNINNKQPRDLSDET 88
+QDDF +QMLS+LPS W DL KSPW VD + +
Sbjct: 17 TQDDFFDQMLSTLPSA-WADLGGGGGGAAGKSPW-EVDPAAAAAASQV------------ 62
Query: 89 APSTTQENNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAA 148
FDES +LAS++R HQI G G G + +Q
Sbjct: 63 ---------------FDESALLASRLRHHQIGGAGGGGGEKPVMLQLSELHRQAGGGEED 107
Query: 149 ARGGIG-LPLSLGNGGDNDIVDV-------SSFKSQQGGDGSVQALYNGFTGSLHGSTQP 200
G LPL D +V FKS G AL+NGF
Sbjct: 108 GSGAFSPLPLF------TDRTNVPPREEMEGGFKSPNAAAGGEHALFNGFGVHGGSGGAG 161
Query: 201 QHFHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTG---GGGGGGNTPAQQPKQRVRARRG 257
Q Q SM GQ+FG P ASG T GGGG P +Q QRVRARRG
Sbjct: 162 QPPFG-QGGSMSGQSFGGPA---------ASGGTAPVTSSGGGGTAPPRQ--QRVRARRG 209
Query: 258 QATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS 317
QATDPHSIAERLRRERIAERMK+LQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS
Sbjct: 210 QATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS 269
Query: 318 RLGGAAAVAPLVADM------------SSEGGGGGDCIQANGRNPNGAQTTSANDSLTVT 365
RLGGAA +APLVA M S G G G + VT
Sbjct: 270 RLGGAAGMAPLVASMSSEGNSNGSSNGSGGKASKGGTGGEGGGGGGGGGGGGTGGGMRVT 329
Query: 366 EHQVAKLMEEDMGSAMQYLQGKGLCLMP 393
E QVAK+MEEDMG+AMQYLQGKGLCLMP
Sbjct: 330 EQQVAKMMEEDMGTAMQYLQGKGLCLMP 357
>gi|242063376|ref|XP_002452977.1| hypothetical protein SORBIDRAFT_04g035890 [Sorghum bicolor]
gi|241932808|gb|EES05953.1| hypothetical protein SORBIDRAFT_04g035890 [Sorghum bicolor]
Length = 393
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 173/358 (48%), Positives = 201/358 (56%), Gaps = 39/358 (10%)
Query: 39 QDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNV 98
QDDF +QMLS+LP+ +W+DL S K P +L V
Sbjct: 14 QDDFFDQMLSTLPA-AWSDLGS-----------------GKSPWEL-------PAGAGAV 48
Query: 99 PAGFQFDESMILA-SKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPL 157
P + L S++R HQI G G + LPL
Sbjct: 49 PEDAAAYDEAALLASRLRHHQIGGGGAGAGEKPLMLHLSDLHGLGGGGAGDDAGFMPLPL 108
Query: 158 SLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGF-TGSLHGSTQPQHFHHLQVRSMPG-QT 215
D+ +D ++FKS G+ QALYNGF +H + F Q SMP Q+
Sbjct: 109 FTDRARDD--MD-AAFKSPNA-TGADQALYNGFGAAGMHAAVHQPPFG--QGGSMPAAQS 162
Query: 216 FGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIA 275
FG A A+G+ G A +QR RA+RGQATDPHSIAERLRRERIA
Sbjct: 163 FGGGAAAAGGAPAPAAGAASAG----GGAAPPRQQRQRAKRGQATDPHSIAERLRRERIA 218
Query: 276 ERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSE 335
ERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA AV PLVA M+SE
Sbjct: 219 ERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATAVGPLVASMASE 278
Query: 336 GGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMP 393
G G G+ +G N N A + SL VTE QVA+LMEEDMG+AMQYLQGKGLCLMP
Sbjct: 279 GNGNGNGTSDSG-NGNAANGENGGGSLQVTEQQVARLMEEDMGTAMQYLQGKGLCLMP 335
>gi|414885458|tpg|DAA61472.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 316
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/227 (61%), Positives = 154/227 (67%), Gaps = 27/227 (11%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P+QRVRARRGQATDPHSIAERLRRERIAERMKALQELV NANKTDKASMLDEIIDYVKFL
Sbjct: 113 PRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVSNANKTDKASMLDEIIDYVKFL 172
Query: 308 QLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEH 367
QLQ VLSMSRLGGAA + + +GA + +D L VTE
Sbjct: 173 QLQ--VLSMSRLGGAA---------------------RSRQGRDGAAAAAGSDGLAVTEQ 209
Query: 368 QVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHN 427
QVAKLMEEDMG+AMQYLQGKGLCLMP+SLA AIS+ATCH R P+ ++
Sbjct: 210 QVAKLMEEDMGTAMQYLQGKGLCLMPVSLAAAISSATCHMRPPVGGPGVAAGHHMAAMRL 269
Query: 428 PLLQSNGEGP----TSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
P + + G G SPSMS+LT SA GA KDAASVSKP
Sbjct: 270 PHVTNGGAGADDVSASPSMSMLTTPSAMPNGAGAGVDGKDAASVSKP 316
>gi|414885459|tpg|DAA61473.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 344
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/227 (61%), Positives = 154/227 (67%), Gaps = 27/227 (11%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P+QRVRARRGQATDPHSIAERLRRERIAERMKALQELV NANKTDKASMLDEIIDYVKFL
Sbjct: 141 PRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVSNANKTDKASMLDEIIDYVKFL 200
Query: 308 QLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEH 367
QLQ VLSMSRLGGAA + + +GA + +D L VTE
Sbjct: 201 QLQ--VLSMSRLGGAA---------------------RSRQGRDGAAAAAGSDGLAVTEQ 237
Query: 368 QVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNPHHN 427
QVAKLMEEDMG+AMQYLQGKGLCLMP+SLA AIS+ATCH R P+ ++
Sbjct: 238 QVAKLMEEDMGTAMQYLQGKGLCLMPVSLAAAISSATCHMRPPVGGPGVAAGHHMAAMRL 297
Query: 428 PLLQSNGEGP----TSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 470
P + + G G SPSMS+LT SA GA KDAASVSKP
Sbjct: 298 PHVTNGGAGADDVSASPSMSMLTTPSAMPNGAGAGVDGKDAASVSKP 344
>gi|222623841|gb|EEE57973.1| hypothetical protein OsJ_08713 [Oryza sativa Japonica Group]
Length = 432
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 177/390 (45%), Positives = 211/390 (54%), Gaps = 58/390 (14%)
Query: 39 QDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNV 98
QDDF +QMLS+LP+ W++L S K DL+ ++
Sbjct: 19 QDDFFDQMLSTLPAV-WSELGS-----------------GKPAWDLTAGAVGGGGGASDD 60
Query: 99 PAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIG--LP 156
+ FD+S +LAS++RQHQI G G + + + + GG LP
Sbjct: 61 HSAAAFDDSALLASRLRQHQIDG----GGDKPIMLQLSDLHRHHGLAAGDDSGGAAGFLP 116
Query: 157 LSLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGST---QPQHFHHLQVRSMPG 213
LSL D +D ++FKS G G ALYNGF + QP F Q SMP
Sbjct: 117 LSLFADRSQDDID-AAFKSPNGARGD-HALYNGFGAAGMHGAAAMQPPPFG--QGGSMPA 172
Query: 214 QTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQA-TDPHSIAER---- 268
Q+FG ++ + G A P ++ + R TDPHSIAER
Sbjct: 173 QSFGGGAAASGGGGGGSASAAAAAGASSGGGAAAPPRQRQRARRGQATDPHSIAERVYHS 232
Query: 269 ------------------LRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
LRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ
Sbjct: 233 PTTFPFSPPFFIASMPCCLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 292
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQA--NGRNPNGAQTTSAN--DSLTVTE 366
VKVLSMSRLGGA+AVAPLVA+MSSE G G+ + NG NG+ N +L VTE
Sbjct: 293 VKVLSMSRLGGASAVAPLVANMSSESNGNGNATSSSGNGEAANGSSNGDNNGGGTLRVTE 352
Query: 367 HQVAKLMEEDMGSAMQYLQGKGLCLMPISL 396
QVAKLMEEDMGSAMQYLQGKGLCLMPISL
Sbjct: 353 QQVAKLMEEDMGSAMQYLQGKGLCLMPISL 382
>gi|47497022|dbj|BAD19075.1| basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group]
gi|47497231|dbj|BAD19276.1| basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group]
Length = 463
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 177/390 (45%), Positives = 211/390 (54%), Gaps = 58/390 (14%)
Query: 39 QDDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNV 98
QDDF +QMLS+LP+ W++L S K DL+ ++
Sbjct: 19 QDDFFDQMLSTLPAV-WSELGS-----------------GKPAWDLTAGAVGGGGGASDD 60
Query: 99 PAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIG--LP 156
+ FD+S +LAS++RQHQI G G + + + + GG LP
Sbjct: 61 HSAAAFDDSALLASRLRQHQIDG----GGDKPIMLQLSDLHRHHGLAAGDDSGGAAGFLP 116
Query: 157 LSLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGST---QPQHFHHLQVRSMPG 213
LSL D +D ++FKS G G ALYNGF + QP F Q SMP
Sbjct: 117 LSLFADRSQDDID-AAFKSPNGARGD-HALYNGFGAAGMHGAAAMQPPPFG--QGGSMPA 172
Query: 214 QTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQA-TDPHSIAER---- 268
Q+FG ++ + G A P ++ + R TDPHSIAER
Sbjct: 173 QSFGGGAAASGGGGGGSASAAAAAGASSGGGAAAPPRQRQRARRGQATDPHSIAERVYHS 232
Query: 269 ------------------LRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
LRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ
Sbjct: 233 PTTFPFSPPFFIASMPCCLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 292
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQA--NGRNPNGAQTTSAN--DSLTVTE 366
VKVLSMSRLGGA+AVAPLVA+MSSE G G+ + NG NG+ N +L VTE
Sbjct: 293 VKVLSMSRLGGASAVAPLVANMSSESNGNGNATSSSGNGEAANGSSNGDNNGGGTLRVTE 352
Query: 367 HQVAKLMEEDMGSAMQYLQGKGLCLMPISL 396
QVAKLMEEDMGSAMQYLQGKGLCLMPISL
Sbjct: 353 QQVAKLMEEDMGSAMQYLQGKGLCLMPISL 382
>gi|302809450|ref|XP_002986418.1| hypothetical protein SELMODRAFT_425336 [Selaginella moellendorffii]
gi|300145954|gb|EFJ12627.1| hypothetical protein SELMODRAFT_425336 [Selaginella moellendorffii]
Length = 355
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 118/163 (72%), Positives = 135/163 (82%), Gaps = 4/163 (2%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRE+IAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ
Sbjct: 133 RPRVRARRGQATDPHSIAERLRREKIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 192
Query: 309 LQVKVLSMSRLGGA-AAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEH 367
LQVKVLSMSRLGGA A +APLVAD+ E G G + + ++ + S D + +TEH
Sbjct: 193 LQVKVLSMSRLGGAGATMAPLVADLPLE-GAGQELVSSSQLCRQISVNLSPQDGIALTEH 251
Query: 368 QVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNP 410
QVA+LME+DMGSAMQYLQ KGLCLMPISLAT+IS +C ++ P
Sbjct: 252 QVARLMEDDMGSAMQYLQSKGLCLMPISLATSIS--SCSTKVP 292
>gi|168048453|ref|XP_001776681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671973|gb|EDQ58517.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 233
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/187 (67%), Positives = 137/187 (73%), Gaps = 16/187 (8%)
Query: 223 MNQTQAQASGSTGGGGGGGNTPAQQP------KQRVRARRGQATDPHSIAERLRRERIAE 276
M+ AQ SG GG P+ QP + RVRARRGQATDPHSIAERLRRERIAE
Sbjct: 1 MSTGSAQGSGYANPGG----VPSGQPLPGIGARPRVRARRGQATDPHSIAERLRRERIAE 56
Query: 277 RMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV-ADMSSE 335
RMKALQELVPN+NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA A+ LV D+ SE
Sbjct: 57 RMKALQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAGALPSLVNNDLPSE 116
Query: 336 GGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPIS 395
G + PN AQ D L +TE QV ++ME+DMGSAMQYLQ KGLCLMPIS
Sbjct: 117 GANTFAASAGSSGIPNPAQ-----DGLALTERQVTRMMEDDMGSAMQYLQSKGLCLMPIS 171
Query: 396 LATAIST 402
LATAIST
Sbjct: 172 LATAIST 178
>gi|242094954|ref|XP_002437967.1| hypothetical protein SORBIDRAFT_10g005650 [Sorghum bicolor]
gi|241916190|gb|EER89334.1| hypothetical protein SORBIDRAFT_10g005650 [Sorghum bicolor]
Length = 447
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 181/389 (46%), Positives = 216/389 (55%), Gaps = 73/389 (18%)
Query: 40 DDFLEQMLSSLPSCSWTDL----KSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQE 95
DDF +QMLS+LPS W DL KSPW +L P Q+
Sbjct: 22 DDFFDQMLSTLPSA-WADLGAGGKSPW---ELTPGTGAGAAAED-----------PAAQQ 66
Query: 96 NNVPAGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGL 155
++ DES +LAS++RQHQI G G+ S+A+ M+Q GG+G
Sbjct: 67 SHFG-----DESALLASRLRQHQIGG----GDVKSSASPVMLQLSDLH-----RHGGLGG 112
Query: 156 PLSLGNGGD-----NDIVDVSSFKSQQGG------DGSVQALYNGFTGSLHGST--QPQH 202
S GNG +D V + + +GG G +L+NGF +HG+ QPQ
Sbjct: 113 EESRGNGFSPLPLFSDRSSVPAREEMEGGFKSPNSAGGDHSLFNGF--GMHGAAAGQPQF 170
Query: 203 FHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDP 262
Q SM Q+ G P QA + S+ GG A +QR RARRGQATDP
Sbjct: 171 G---QSGSMSPQSMGGPAASGGAPQAGGAASSAGG----GGAAPPRQQRQRARRGQATDP 223
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 322
HSIAERLRRERIAERMK+LQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA
Sbjct: 224 HSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 283
Query: 323 AAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLT------------------V 364
A +APLVA M+S G N + +A+ + T V
Sbjct: 284 AGMAPLVASMASSEGNSNGSGGGNNNSGGKGSGGAASATTTTKSGSGENGNGNGSGGVRV 343
Query: 365 TEHQVAKLMEEDMGSAMQYLQGKGLCLMP 393
TEHQVAK+MEEDMG+AMQYLQGKGLCLMP
Sbjct: 344 TEHQVAKMMEEDMGTAMQYLQGKGLCLMP 372
>gi|125541459|gb|EAY87854.1| hypothetical protein OsI_09276 [Oryza sativa Indica Group]
Length = 431
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 170/385 (44%), Positives = 204/385 (52%), Gaps = 60/385 (15%)
Query: 46 MLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNVPAGFQFD 105
MLS+LP+ W++L S K DL+ ++ + FD
Sbjct: 23 MLSTLPAV-WSELGS-----------------GKPAWDLTAGAVGGGGGASDDHSAAAFD 64
Query: 106 ESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIG--LPLSLGNGG 163
+S +LAS++RQHQI G G + + + + GG LPLSL
Sbjct: 65 DSALLASRLRQHQIDG----GGDKPIMLQLSDLHRHHGLAAGDDSGGAAGFLPLSLFADR 120
Query: 164 DNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGST---QPQHFHHLQVRSMPGQTFGAPG 220
D +D ++FKS G G ALYNGF + QP F Q SMP Q+FG
Sbjct: 121 SQDDID-AAFKSPNGARGD-HALYNGFGAAGMHGAAAMQPPPFG--QGGSMPAQSFGGGA 176
Query: 221 PVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQA---TDPHSIAER--------- 268
++ G ++ + +R + TDPHSIAER
Sbjct: 177 AASGGGGGGGGSASAAAAAGASSGGGAAAPPRQRQRARRGQATDPHSIAERVYHSPTTFP 236
Query: 269 -------------LRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
LRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS
Sbjct: 237 FSPPFFIASMPCCLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 296
Query: 316 MSRLGGAAAVAPLVADMSSEGGGGGDCIQA--NGRNPNGAQTTSAN--DSLTVTEHQVAK 371
MSRLGGA+AVAPLVA+MSSE G G+ + NG NG+ N +L VTE QVAK
Sbjct: 297 MSRLGGASAVAPLVANMSSESNGNGNATSSSGNGEAANGSSNGDNNGGGTLRVTEQQVAK 356
Query: 372 LMEEDMGSAMQYLQGKGLCLMPISL 396
LMEEDMGSAMQYLQGKGLCLMPISL
Sbjct: 357 LMEEDMGSAMQYLQGKGLCLMPISL 381
>gi|413952903|gb|AFW85552.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 391
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 173/376 (46%), Positives = 207/376 (55%), Gaps = 85/376 (22%)
Query: 40 DDFLEQMLSSLPSCSWTDLKSPWGVVDLNPNNNNNNINNKQPRDLSDETAPSTTQENNVP 99
DDF +QMLS+LPS W DL + G + DL+ ++
Sbjct: 22 DDFFDQMLSTLPSA-WADLGA--GAAE----------------DLAAQSH---------- 52
Query: 100 AGFQFDESMILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGIGLPLSL 159
F D S +LAS++RQHQI G G+ S+A+ Q Q+M+ + + L
Sbjct: 53 --FGDDSSALLASRLRQHQIGG----GDVKSSAS------HQSQVMLQLS--DLHRHGGL 98
Query: 160 GNGGDNDIVDVSS---------FKS--QQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQV 208
G D S+ FKS GGD S L+NGF +HG+ Q
Sbjct: 99 GGEESGLFTDRSAPAPEEMEGGFKSPNSAGGDHS---LFNGF--GVHGAATVQ------- 146
Query: 209 RSMPGQTFGAPGPVMNQT---------QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQA 259
FG G + ++ A +G GGG P +Q +QR RA+RGQA
Sbjct: 147 -----PPFGQSGSMSPESLGGTAASGGGAPPAGGAASSAGGGAAPPRQLRQRQRAKRGQA 201
Query: 260 TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
TDPHSIAERLRRERIAERMK+LQELVPNANKTDKASMLDEIIDYV+FLQLQVKVLSMSRL
Sbjct: 202 TDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVRFLQLQVKVLSMSRL 261
Query: 320 GGAA-AVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSAN-DSLTVTEHQVAKLMEEDM 377
GGAA +APLVA M+S G N A T S N L V EHQVAK+MEEDM
Sbjct: 262 GGAAGGMAPLVASMASSEGKSNGSGGGGNTN---ATTKSGNGGGLRVAEHQVAKMMEEDM 318
Query: 378 GSAMQYLQGKGLCLMP 393
G+AMQYLQGKGLCLMP
Sbjct: 319 GTAMQYLQGKGLCLMP 334
>gi|302764076|ref|XP_002965459.1| hypothetical protein SELMODRAFT_24892 [Selaginella moellendorffii]
gi|302825088|ref|XP_002994179.1| hypothetical protein SELMODRAFT_24890 [Selaginella moellendorffii]
gi|300137980|gb|EFJ04769.1| hypothetical protein SELMODRAFT_24890 [Selaginella moellendorffii]
gi|300166273|gb|EFJ32879.1| hypothetical protein SELMODRAFT_24892 [Selaginella moellendorffii]
Length = 143
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/152 (74%), Positives = 120/152 (78%), Gaps = 16/152 (10%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
RVRARRGQATDPHSIAERLRRERIAERMKALQ+LVPNANKTDKASMLDEI+DYVKFLQLQ
Sbjct: 3 RVRARRGQATDPHSIAERLRRERIAERMKALQDLVPNANKTDKASMLDEIVDYVKFLQLQ 62
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTS-----ANDSLTVT 365
VKVLSMSRLG AAAV LVAD+ SEG N A T S ++D L
Sbjct: 63 VKVLSMSRLGSAAAVPSLVADLPSEGA-----------NSLLASTLSRSTGISHDGLASA 111
Query: 366 EHQVAKLMEEDMGSAMQYLQGKGLCLMPISLA 397
E QVA+LM+EDMGSAMQYLQ KGLCLMPISLA
Sbjct: 112 ERQVARLMDEDMGSAMQYLQSKGLCLMPISLA 143
>gi|242047606|ref|XP_002461549.1| hypothetical protein SORBIDRAFT_02g004570 [Sorghum bicolor]
gi|241924926|gb|EER98070.1| hypothetical protein SORBIDRAFT_02g004570 [Sorghum bicolor]
Length = 277
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/193 (61%), Positives = 135/193 (69%), Gaps = 14/193 (7%)
Query: 217 GAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAE 276
G P P M Q Q + G GG PA +PK VRARRGQATDPHSIAERLRRERIAE
Sbjct: 86 GPPPPQMFQAQPK----PGEGGMAPQPPAPRPK--VRARRGQATDPHSIAERLRRERIAE 139
Query: 277 RMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEG 336
RM+ALQELVPN NKTD+A+MLDEI+DYVKFL+LQVKVLSMSRLGGA AVA LVAD+
Sbjct: 140 RMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPL-- 197
Query: 337 GGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISL 396
++ + Q S TE QVAKLMEED+G+AMQ+LQ K LC+MPISL
Sbjct: 198 -----SVKGEASDSGSTQHIWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMPISL 252
Query: 397 ATAISTATCHSRN 409
A AI T HS++
Sbjct: 253 AMAIYD-TQHSQD 264
>gi|242037799|ref|XP_002466294.1| hypothetical protein SORBIDRAFT_01g005130 [Sorghum bicolor]
gi|241920148|gb|EER93292.1| hypothetical protein SORBIDRAFT_01g005130 [Sorghum bicolor]
Length = 283
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/232 (54%), Positives = 142/232 (61%), Gaps = 25/232 (10%)
Query: 178 GGDGSVQALYNGFTGSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTGGG 237
G D L F G QP H + P Q F A P GG
Sbjct: 65 GKDREAVQLPGLFPPVFSGGVQPPHLRP----NPPTQVFRAQQP-----------KQGGA 109
Query: 238 GGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASML 297
G G PA +PK VRARRGQATDPHSIAERLRRERIAERM+ALQELVPN NKTD+A ML
Sbjct: 110 GVGPQPPAPRPK--VRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAVML 167
Query: 298 DEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTS 357
DEI+DYVKFL+LQVKVLSMSRLGGA AVA LVAD+ ++ + Q
Sbjct: 168 DEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPL-------SVKGEASDSGSKQQIW 220
Query: 358 ANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRN 409
S TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA AI T HS++
Sbjct: 221 EKWSTDGTERQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAIYD-TQHSQD 271
>gi|168043431|ref|XP_001774188.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674456|gb|EDQ60964.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 231
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/163 (69%), Positives = 127/163 (77%), Gaps = 5/163 (3%)
Query: 240 GGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDE 299
G + P + RVRARRGQATDPHSIAERLRRERIAERMKALQELVPN+NKTDKASMLDE
Sbjct: 19 GQSLPGMGARPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNSNKTDKASMLDE 78
Query: 300 IIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSAN 359
IIDYVKFLQLQVKVLSMSRLGGA A+ + +D +EGG + N AQ A+
Sbjct: 79 IIDYVKFLQLQVKVLSMSRLGGAGAL--VNSDPPAEGGNNFAASAGSSGVSNPAQDGLAS 136
Query: 360 DSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIST 402
+TE QV ++ME+DMG+AMQYLQ KGLCLMPISLATAIST
Sbjct: 137 ---ALTERQVTRMMEDDMGAAMQYLQSKGLCLMPISLATAIST 176
>gi|226496235|ref|NP_001140213.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
gi|194698524|gb|ACF83346.1| unknown [Zea mays]
gi|195636992|gb|ACG37964.1| BHLH transcription factor [Zea mays]
gi|414883773|tpg|DAA59787.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 285
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/187 (63%), Positives = 134/187 (71%), Gaps = 13/187 (6%)
Query: 217 GAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAE 276
G P P M Q Q + G GG PA +PK VRARRGQATDPHSIAERLRRERIAE
Sbjct: 87 GPPPPQMFQAQPK----PGEGGMAPQPPAPRPK--VRARRGQATDPHSIAERLRRERIAE 140
Query: 277 RMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMS-SE 335
RM+ALQELVPN NKTD+A+MLDEI+DYVKFL+LQVKVLSMSRLGGA AVA LVAD+ S
Sbjct: 141 RMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPLSV 200
Query: 336 GGGGGDCIQANGRNPNGAQTTSANDSLTV--TEHQVAKLMEEDMGSAMQYLQGKGLCLMP 393
G GD G P Q + + TE QVAKLMEED+G+AMQ+LQ K LC+MP
Sbjct: 201 KGEAGD----GGGAPQQQQQQHVWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMP 256
Query: 394 ISLATAI 400
+SLA AI
Sbjct: 257 VSLAMAI 263
>gi|226495509|ref|NP_001152044.1| LOC100285681 [Zea mays]
gi|195652123|gb|ACG45529.1| BHLH transcription factor [Zea mays]
gi|413932798|gb|AFW67349.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 285
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 122/220 (55%), Positives = 140/220 (63%), Gaps = 25/220 (11%)
Query: 190 FTGSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPK 249
F + G QP H + P Q F A P GG G PA +PK
Sbjct: 79 FPPAFGGGVQPPHLRA----TPPTQVFHAQQP-----------KQGGAAVGPQPPAPRPK 123
Query: 250 QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQL 309
VRARRGQATDPHSIAERLRRERIAERM+ALQELVPN NKTD+A+MLDEI+DYVKFL+L
Sbjct: 124 --VRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRL 181
Query: 310 QVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQV 369
QVKVLSMSRLGGA AVA LVAD+ ++ + Q S TE QV
Sbjct: 182 QVKVLSMSRLGGAGAVAQLVADIPL-------SVKGEASDSGSKQQIWEKWSTDGTERQV 234
Query: 370 AKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRN 409
AKLMEED+G+AMQ+LQ K LC+MPISLA AI T HS++
Sbjct: 235 AKLMEEDIGAAMQFLQSKALCMMPISLAMAIYD-TQHSQD 273
>gi|115455925|ref|NP_001051563.1| Os03g0797600 [Oryza sativa Japonica Group]
gi|31126765|gb|AAP44685.1| unknown protein [Oryza sativa Japonica Group]
gi|108711561|gb|ABF99356.1| Lipoamide dehydrogenase, putative, expressed [Oryza sativa Japonica
Group]
gi|113550034|dbj|BAF13477.1| Os03g0797600 [Oryza sativa Japonica Group]
gi|215737529|dbj|BAG96659.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218193907|gb|EEC76334.1| hypothetical protein OsI_13903 [Oryza sativa Indica Group]
Length = 294
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 124/166 (74%), Gaps = 9/166 (5%)
Query: 235 GGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKA 294
GG G PA +PK VRARRGQATDPHSIAERLRRERIAERM+ALQELVPN NKTD+A
Sbjct: 118 GGAAVGPQPPAPRPK--VRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRA 175
Query: 295 SMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQ 354
+MLDEI+DYVKFL+LQVKVLSMSRLGGA AVA LVAD+ ++ + G Q
Sbjct: 176 AMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPL-------SVKGEASDSGGNQ 228
Query: 355 TTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
S TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA AI
Sbjct: 229 QIWEKWSTDGTERQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAI 274
>gi|222625964|gb|EEE60096.1| hypothetical protein OsJ_12958 [Oryza sativa Japonica Group]
Length = 294
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 124/166 (74%), Gaps = 9/166 (5%)
Query: 235 GGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKA 294
GG G PA +PK VRARRGQATDPHSIAERLRRERIAERM+ALQELVPN NKTD+A
Sbjct: 118 GGAAVGPQPPAPRPK--VRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRA 175
Query: 295 SMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQ 354
+MLDEI+DYVKFL+LQVKVLSMSRLGGA AVA LVAD+ ++ + G Q
Sbjct: 176 AMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPL-------SVKGEASDSGGNQ 228
Query: 355 TTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
S TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA AI
Sbjct: 229 QIWEKWSTDGTERQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAI 274
>gi|194696204|gb|ACF82186.1| unknown [Zea mays]
gi|414883772|tpg|DAA59786.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 193
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/175 (65%), Positives = 129/175 (73%), Gaps = 9/175 (5%)
Query: 229 QASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA 288
QA G GG PA +PK VRARRGQATDPHSIAERLRRERIAERM+ALQELVPN
Sbjct: 3 QAQPKPGEGGMAPQPPAPRPK--VRARRGQATDPHSIAERLRRERIAERMRALQELVPNT 60
Query: 289 NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMS-SEGGGGGDCIQANG 347
NKTD+A+MLDEI+DYVKFL+LQVKVLSMSRLGGA AVA LVAD+ S G GD G
Sbjct: 61 NKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPLSVKGEAGD----GG 116
Query: 348 RNPNGAQTTSANDSLTV--TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
P Q + + TE QVAKLMEED+G+AMQ+LQ K LC+MP+SLA AI
Sbjct: 117 GAPQQQQQQHVWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMPVSLAMAI 171
>gi|323388949|gb|ADX60279.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 294
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/166 (65%), Positives = 124/166 (74%), Gaps = 9/166 (5%)
Query: 235 GGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKA 294
GG G PA +PK VRARRGQATDPHSIAERLRRERIAERM+ALQELVPN NKTD+A
Sbjct: 118 GGAAVGPQPPAPRPK--VRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRA 175
Query: 295 SMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQ 354
+MLDEI+DYVKFL+LQVKVLS+SRLGGA AVA LVAD+ ++ + G Q
Sbjct: 176 AMLDEILDYVKFLRLQVKVLSISRLGGAGAVAQLVADIPL-------SVKGEASDSGGNQ 228
Query: 355 TTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
S TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA AI
Sbjct: 229 QIWEKWSTDGTERQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAI 274
>gi|449530006|ref|XP_004171988.1| PREDICTED: transcription factor UNE12-like, partial [Cucumis
sativus]
Length = 219
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 113/176 (64%), Positives = 131/176 (74%), Gaps = 12/176 (6%)
Query: 247 QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKF 306
Q + RVRARRGQATDPHSIAERLRRERIAERMKALQELVP+ NKTD+A+MLDEI+DYVKF
Sbjct: 53 QVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKF 112
Query: 307 LQLQVKVLSMSRLGGAAAVAPLVAD--MSSEGGGGGDCIQANGRNPNGAQTTSANDSLTV 364
L+LQVKVLSMSRLGGA AVA LVAD +SS G G + +G N + S++
Sbjct: 113 LRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIE----SGNNQQAWEKWSSDG---- 164
Query: 365 TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNN 420
TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA+AI H +P I N
Sbjct: 165 TEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRT--HQADPQILVKPEMNT 218
>gi|298204851|emb|CBI34158.3| unnamed protein product [Vitis vinifera]
Length = 261
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 126/160 (78%), Gaps = 14/160 (8%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA +P RVRARRGQATDPHSIAERLRRERIAERMKALQELVP+ANKTD+A+MLDEI+DY
Sbjct: 93 PAIRP--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDY 150
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVAD---MSSEGGGGGDCIQANGRNPNGAQTTSAND 360
VKFL+LQVKVLSMSRLGGA AVA LVAD +S EG G G N + S +
Sbjct: 151 VKFLRLQVKVLSMSRLGGAGAVAQLVADVPLLSIEGDG-----TEGGSNQQAWEKWSTDG 205
Query: 361 SLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 206 ----TEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAI 241
>gi|359487888|ref|XP_002274833.2| PREDICTED: transcription factor UNE12-like [Vitis vinifera]
Length = 331
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 126/160 (78%), Gaps = 14/160 (8%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA +P RVRARRGQATDPHSIAERLRRERIAERMKALQELVP+ANKTD+A+MLDEI+DY
Sbjct: 163 PAIRP--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDY 220
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVAD---MSSEGGGGGDCIQANGRNPNGAQTTSAND 360
VKFL+LQVKVLSMSRLGGA AVA LVAD +S EG G G N + S +
Sbjct: 221 VKFLRLQVKVLSMSRLGGAGAVAQLVADVPLLSIEGDG-----TEGGSNQQAWEKWSTDG 275
Query: 361 SLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 276 ----TEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAI 311
>gi|449435746|ref|XP_004135655.1| PREDICTED: transcription factor UNE12-like [Cucumis sativus]
Length = 318
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/176 (64%), Positives = 131/176 (74%), Gaps = 12/176 (6%)
Query: 247 QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKF 306
Q + RVRARRGQATDPHSIAERLRRERIAERMKALQELVP+ NKTD+A+MLDEI+DYVKF
Sbjct: 152 QVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKF 211
Query: 307 LQLQVKVLSMSRLGGAAAVAPLVAD--MSSEGGGGGDCIQANGRNPNGAQTTSANDSLTV 364
L+LQVKVLSMSRLGGA AVA LVAD +SS G G + +G N + S++
Sbjct: 212 LRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIE----SGNNQQAWEKWSSDG---- 263
Query: 365 TEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNN 420
TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA+AI H +P I N
Sbjct: 264 TEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAI--FRTHQADPQILVKPEMNT 317
>gi|223702396|gb|ACN21629.1| putative basic helix-loop-helix protein BHLH2 [Lotus japonicus]
gi|388506732|gb|AFK41432.1| unknown [Lotus japonicus]
Length = 342
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 105/152 (69%), Positives = 121/152 (79%), Gaps = 6/152 (3%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAERM+ALQELVP+ NK+D+A+MLDEI+DYVKFL+
Sbjct: 177 RPRVRARRGQATDPHSIAERLRRERIAERMRALQELVPSINKSDRAAMLDEIVDYVKFLR 236
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVA LVAD+ G D G A + +ND TE Q
Sbjct: 237 LQVKVLSMSRLGGAGAVAQLVADVPLSAVEGEDI---EGGASEQAWSKWSNDG---TEQQ 290
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
VAKLMEED+G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 291 VAKLMEEDVGAAMQFLQSKALCIMPISLASAI 322
>gi|225432880|ref|XP_002284047.1| PREDICTED: transcription factor UNE12 [Vitis vinifera]
gi|297737150|emb|CBI26351.3| unnamed protein product [Vitis vinifera]
Length = 313
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/167 (67%), Positives = 128/167 (76%), Gaps = 18/167 (10%)
Query: 242 NTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEII 301
+ PA +P RVRARRGQATDPHSIAERLRRERIAERMKALQELVP++NKTD+A+MLDEI+
Sbjct: 143 HPPAIRP--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPSSNKTDRAAMLDEIV 200
Query: 302 DYVKFLQLQVKVLSMSRLGGAAAVAPLVADM-----SSEGGGGGDCIQANGRNPNGAQTT 356
DYVKFL+LQVKVLSMSRLGGA AVA LVAD+ E G GG QA +
Sbjct: 201 DYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPLPAVEGETGEGGSNQQAWDK-------- 252
Query: 357 SANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTA 403
+ND TE +VAKLMEED+G+AMQ+LQ K LC+MPISLA AI A
Sbjct: 253 WSNDG---TEREVAKLMEEDVGAAMQFLQSKALCIMPISLAAAIYPA 296
>gi|357119229|ref|XP_003561348.1| PREDICTED: transcription factor UNE12-like [Brachypodium
distachyon]
Length = 288
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 122/159 (76%), Gaps = 12/159 (7%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA +PKQR ARRGQATDPHSIAERLRRERIAERM+ALQELVPN NKTD+A+MLDEI+DY
Sbjct: 120 PAPRPKQR--ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDY 177
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVAD--MSSEGGGGGDCIQANGRNPNGAQTTSANDS 361
VKFL+LQVKVLSMSRLGGA AVA L+AD +S +G D G Q S
Sbjct: 178 VKFLRLQVKVLSMSRLGGAGAVAQLIADIPLSVKGEEASDS--------GGKQQIWEKWS 229
Query: 362 LTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA AI
Sbjct: 230 TDGTEKQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAI 268
>gi|147771925|emb|CAN66761.1| hypothetical protein VITISV_032727 [Vitis vinifera]
Length = 337
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/167 (67%), Positives = 128/167 (76%), Gaps = 18/167 (10%)
Query: 242 NTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEII 301
+ PA +P RVRARRGQATDPHSIAERLRRERIAERMKALQELVP++NKTD+A+MLDEI+
Sbjct: 167 HPPAIRP--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPSSNKTDRAAMLDEIV 224
Query: 302 DYVKFLQLQVKVLSMSRLGGAAAVAPLVADM-----SSEGGGGGDCIQANGRNPNGAQTT 356
DYVKFL+LQVKVLSMSRLGGA AVA LVAD+ E G GG QA +
Sbjct: 225 DYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPLPAVEGETGEGGSNQQAWDK-------- 276
Query: 357 SANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTA 403
+ND TE +VAKLMEED+G+AMQ+LQ K LC+MPISLA AI A
Sbjct: 277 WSNDG---TEREVAKLMEEDVGAAMQFLQSKALCIMPISLAAAIYPA 320
>gi|356535169|ref|XP_003536121.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 328
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 122/152 (80%), Gaps = 5/152 (3%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAERMKALQELVP+ NKTD+A+MLDEI+DYVKFL+
Sbjct: 163 RPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLR 222
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVA LVAD+ G I+ G + A +ND TE Q
Sbjct: 223 LQVKVLSMSRLGGAGAVAQLVADVPLSAVEGDQDIE--GVSNEQAWDKWSNDG---TEQQ 277
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
VAKLMEED+G+AMQ+LQ K LC+MPISLA++I
Sbjct: 278 VAKLMEEDVGAAMQFLQSKALCIMPISLASSI 309
>gi|195616290|gb|ACG29975.1| helix-loop-helix DNA-binding domain containing protein [Zea mays]
Length = 481
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 108/183 (59%), Positives = 129/183 (70%), Gaps = 9/183 (4%)
Query: 220 GPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMK 279
GPV + + Q ++ G G G K RVRARRGQATDPHSIAERLRRE+I++RMK
Sbjct: 295 GPVSHPSDVQIQPNSVGNGVGV-------KPRVRARRGQATDPHSIAERLRREKISDRMK 347
Query: 280 ALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGG 339
LQ+LVPN+NK DKASMLDEIIDYVKFLQLQVKVLSMSRLG AV PL+A+ +EG G
Sbjct: 348 NLQDLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLAESQTEGYRG 407
Query: 340 GDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATA 399
+ + N G T ++ E +V KLME + SAMQYLQ KGLCLMP++LA+A
Sbjct: 408 Q--LLSAPTNAQGLLDTEESEDTFAFEEEVVKLMETSITSAMQYLQNKGLCLMPVALASA 465
Query: 400 IST 402
IST
Sbjct: 466 IST 468
>gi|162460249|ref|NP_001105867.1| bHLH transcription factor PTF1 [Zea mays]
gi|93359745|gb|ABF13333.1| bHLH transcription factor PTF1 [Zea mays]
Length = 481
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 108/183 (59%), Positives = 129/183 (70%), Gaps = 9/183 (4%)
Query: 220 GPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMK 279
GPV + + Q ++ G G G K RVRARRGQATDPHSIAERLRRE+I++RMK
Sbjct: 295 GPVSHPSDVQIQPNSVGNGVGV-------KPRVRARRGQATDPHSIAERLRREKISDRMK 347
Query: 280 ALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGG 339
LQ+LVPN+NK DKASMLDEIIDYVKFLQLQVKVLSMSRLG AV PL+A+ +EG G
Sbjct: 348 NLQDLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLAESQTEGYRG 407
Query: 340 GDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATA 399
+ + N G T ++ E +V KLME + SAMQYLQ KGLCLMP++LA+A
Sbjct: 408 Q--LLSAPTNAQGLLDTEESEDTFAFEEEVVKLMETSITSAMQYLQNKGLCLMPVALASA 465
Query: 400 IST 402
IST
Sbjct: 466 IST 468
>gi|255580949|ref|XP_002531293.1| conserved hypothetical protein [Ricinus communis]
gi|223529126|gb|EEF31106.1| conserved hypothetical protein [Ricinus communis]
Length = 326
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/170 (65%), Positives = 126/170 (74%), Gaps = 11/170 (6%)
Query: 233 STGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD 292
+ G PA +P RVRARRGQATDPHSIAERLRRERIAERMKALQELVP ANKTD
Sbjct: 146 TPGVVSAASQPPAIRP--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPTANKTD 203
Query: 293 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAD--MSSEGGGGGDCIQANGRNP 350
+A+M+DEI+DYVKFL+LQVKVLSMSRLG A AVA LVAD ++S G D AN
Sbjct: 204 RAAMIDEIVDYVKFLRLQVKVLSMSRLGAAGAVAQLVADVPLASVEGESIDGAAAN---- 259
Query: 351 NGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
Q T S TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 260 ---QQTWEKWSNDGTEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAI 306
>gi|359484248|ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257707 [Vitis vinifera]
Length = 536
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/194 (59%), Positives = 133/194 (68%), Gaps = 11/194 (5%)
Query: 218 APGPVMNQT----QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRER 273
A GP M T Q+ + G GG N K RVRARRGQATDPHSIAERLRRE+
Sbjct: 261 AVGPHMTMTASGLQSLPQTTVGTASGGCNGTG---KPRVRARRGQATDPHSIAERLRREK 317
Query: 274 IAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMS 333
IAERMK LQELVPN+NKTDKASMLDEII+YVKFLQLQVKVLSMSRLG A AV PL+ D
Sbjct: 318 IAERMKNLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAEAVVPLITDGQ 377
Query: 334 SEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMP 393
+EG G + G+ + Q+ D + E +V KLME ++ AMQYLQ KGLCLMP
Sbjct: 378 AEGSKGLSLSPSAGQAEDICQSP---DQIAF-EQEVVKLMESNVTMAMQYLQSKGLCLMP 433
Query: 394 ISLATAISTATCHS 407
I+LATAIS+ S
Sbjct: 434 IALATAISSGKAAS 447
>gi|297738502|emb|CBI27747.3| unnamed protein product [Vitis vinifera]
Length = 389
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/194 (59%), Positives = 133/194 (68%), Gaps = 11/194 (5%)
Query: 218 APGPVMNQT----QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRER 273
A GP M T Q+ + G GG N K RVRARRGQATDPHSIAERLRRE+
Sbjct: 114 AVGPHMTMTASGLQSLPQTTVGTASGGCNGTG---KPRVRARRGQATDPHSIAERLRREK 170
Query: 274 IAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMS 333
IAERMK LQELVPN+NKTDKASMLDEII+YVKFLQLQVKVLSMSRLG A AV PL+ D
Sbjct: 171 IAERMKNLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAEAVVPLITDGQ 230
Query: 334 SEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMP 393
+EG G + G+ + Q+ D + E +V KLME ++ AMQYLQ KGLCLMP
Sbjct: 231 AEGSKGLSLSPSAGQAEDICQSP---DQIAF-EQEVVKLMESNVTMAMQYLQSKGLCLMP 286
Query: 394 ISLATAISTATCHS 407
I+LATAIS+ S
Sbjct: 287 IALATAISSGKAAS 300
>gi|356576702|ref|XP_003556469.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 331
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/177 (64%), Positives = 130/177 (73%), Gaps = 7/177 (3%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQE 283
NQ Q QA+ + P +P RVRARRGQATDPHSIAERLRRERIAERMKALQE
Sbjct: 143 NQFQGQAAAAPASMAAMPQPPGIRP--RVRARRGQATDPHSIAERLRRERIAERMKALQE 200
Query: 284 LVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCI 343
LVP+ NKTD+A+MLDEI+DYVKFL+LQVKVLSMSRLGGA AVA LVAD+ G I
Sbjct: 201 LVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEGDQDI 260
Query: 344 QANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
+ G N A +ND TE QVAKLMEED+G+AMQ+LQ K LC+MPI LA+AI
Sbjct: 261 E-GGANEQ-AWDKWSNDG---TEQQVAKLMEEDVGAAMQFLQSKALCIMPIPLASAI 312
>gi|242095026|ref|XP_002438003.1| hypothetical protein SORBIDRAFT_10g006250 [Sorghum bicolor]
gi|241916226|gb|EER89370.1| hypothetical protein SORBIDRAFT_10g006250 [Sorghum bicolor]
Length = 489
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/183 (58%), Positives = 128/183 (69%), Gaps = 9/183 (4%)
Query: 220 GPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMK 279
GPV + + Q ++ G G G K RVRARRGQATDPHSIAERLRRE+I++RMK
Sbjct: 295 GPVSHPSDVQTQPNSAGNGVGV-------KPRVRARRGQATDPHSIAERLRREKISDRMK 347
Query: 280 ALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGG 339
+LQ+LVPN+NK DKASMLDEIIDYVKFLQLQVKVLSMSRLG AV PL+ + +EG G
Sbjct: 348 SLQDLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLTESQTEGYHG 407
Query: 340 GDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATA 399
+ N G ++ V E +V KLME + SAMQYLQ KGLCLMP++LA+A
Sbjct: 408 QPL--SAPTNTQGLLDALDSEDAFVFEEEVVKLMETSITSAMQYLQNKGLCLMPVALASA 465
Query: 400 IST 402
IST
Sbjct: 466 IST 468
>gi|413937342|gb|AFW71893.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 489
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/194 (57%), Positives = 132/194 (68%), Gaps = 23/194 (11%)
Query: 229 QASGSTGGGGGGGNTPAQQ-----------PKQRVRARRGQATDPHSIAERLRRERIAER 277
Q+S GGG G N P PK RVRARRGQATDPHSIAERLRRE+I++R
Sbjct: 264 QSSNEASGGGTGLNAPPFMVPANGAAGNGAPKPRVRARRGQATDPHSIAERLRREKISDR 323
Query: 278 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGG 337
MK LQELVPN+N+TDKASMLDEII+YVKFLQLQVKVLSMSRLG AV PL+ +E
Sbjct: 324 MKNLQELVPNSNRTDKASMLDEIIEYVKFLQLQVKVLSMSRLGATEAVVPLLTQSQTENS 383
Query: 338 GGGDCIQANGRNPNGAQTTSANDSL----------TVTEHQVAKLMEEDMGSAMQYLQGK 387
GGG + + R+ +G Q + SL E +VA+LME DM +AMQYLQ K
Sbjct: 384 GGGLLL--SPRSGSGRQQQARGGSLPPPSSEVRDGAAFEQEVAQLMESDMTTAMQYLQSK 441
Query: 388 GLCLMPISLATAIS 401
GLCLMP++LA+AIS
Sbjct: 442 GLCLMPVALASAIS 455
>gi|194688984|gb|ACF78576.1| unknown [Zea mays]
gi|238014612|gb|ACR38341.1| unknown [Zea mays]
gi|413952840|gb|AFW85489.1| pi starvation-induced transcription factor1 [Zea mays]
Length = 481
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/183 (58%), Positives = 129/183 (70%), Gaps = 9/183 (4%)
Query: 220 GPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMK 279
GPV + + Q ++ G G G K RVRARRGQATDPHSIAERLRRE+I++RMK
Sbjct: 295 GPVSHPSDVQIQPNSVGNGVGV-------KPRVRARRGQATDPHSIAERLRREKISDRMK 347
Query: 280 ALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGG 339
LQ+LVPN+NK DKASMLDEIID+VKFLQLQVKVLSMSRLG AV PL+A+ +EG G
Sbjct: 348 NLQDLVPNSNKADKASMLDEIIDHVKFLQLQVKVLSMSRLGAPGAVLPLLAESQTEGYRG 407
Query: 340 GDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATA 399
+ + N G T ++ E +V KLME + SAMQYLQ KGLCLMP++LA+A
Sbjct: 408 Q--LLSAPTNAQGLLDTEESEDTFAFEEEVVKLMETSITSAMQYLQNKGLCLMPVALASA 465
Query: 400 IST 402
IST
Sbjct: 466 IST 468
>gi|224123420|ref|XP_002319074.1| predicted protein [Populus trichocarpa]
gi|222857450|gb|EEE94997.1| predicted protein [Populus trichocarpa]
Length = 178
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 107/172 (62%), Positives = 129/172 (75%), Gaps = 10/172 (5%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRR RI ER+KALQELVP NKTD+A+MLDEI+DYVKFL+
Sbjct: 13 RPRVRARRGQATDPHSIAERLRRVRITERVKALQELVPTCNKTDRAAMLDEIVDYVKFLR 72
Query: 309 LQVKVLSMSRLGGAAAVAPLVAD--MSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTE 366
LQ+KVLSMSRLG A AVA LVAD +SS G G + G N + S +D TE
Sbjct: 73 LQIKVLSMSRLGAAGAVAQLVADVPLSSIKGEGNE----GGANQQSWENWSNDD----TE 124
Query: 367 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNN 418
+VAKLMEED+G+AMQ+LQ K LC+MPISLA+AI A + + +I+T +N
Sbjct: 125 QEVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRARPPNASTLINTESNT 176
>gi|222636553|gb|EEE66685.1| hypothetical protein OsJ_23336 [Oryza sativa Japonica Group]
Length = 342
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/161 (64%), Positives = 122/161 (75%), Gaps = 8/161 (4%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ +VRARRGQATDPHSIAERLRRERIAERM+ALQ+LVPN NKTD+A+MLDEI+DYVKFL+
Sbjct: 178 RPKVRARRGQATDPHSIAERLRRERIAERMRALQDLVPNTNKTDRAAMLDEILDYVKFLR 237
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVA LVAD+ ++ + Q S TE Q
Sbjct: 238 LQVKVLSMSRLGGAGAVAQLVADIPI-------SVKGEASDSGSKQQIWEKWSTDGTEKQ 290
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRN 409
VAKLMEED+G+AMQ+LQ K LC+MPISLA AI T HS++
Sbjct: 291 VAKLMEEDIGAAMQFLQSKALCMMPISLAMAIYD-TQHSQD 330
>gi|125557459|gb|EAZ02995.1| hypothetical protein OsI_25136 [Oryza sativa Indica Group]
Length = 293
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/161 (64%), Positives = 122/161 (75%), Gaps = 8/161 (4%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ +VRARRGQATDPHSIAERLRRERIAERM+ALQ+LVPN NKTD+A+MLDEI+DYVKFL+
Sbjct: 129 RPKVRARRGQATDPHSIAERLRRERIAERMRALQDLVPNTNKTDRAAMLDEILDYVKFLR 188
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVA LVAD+ ++ + Q S TE Q
Sbjct: 189 LQVKVLSMSRLGGAGAVAQLVADIPI-------SVKGEASDSGSKQQIWEKWSTDGTEKQ 241
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRN 409
VAKLMEED+G+AMQ+LQ K LC+MPISLA AI T HS++
Sbjct: 242 VAKLMEEDIGAAMQFLQSKALCMMPISLAMAIYD-TQHSQD 281
>gi|77999289|gb|ABB16991.1| unknown [Solanum tuberosum]
Length = 304
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/251 (50%), Positives = 156/251 (62%), Gaps = 35/251 (13%)
Query: 155 LPLSLGNGGDNDIVDVSSFKSQQGGDG-SVQALYNGFTGSLHGSTQPQHFHHLQVRSMPG 213
L LSL NG D D+ + ++ + DG ++ LY G HLQ ++
Sbjct: 64 LGLSLDNGRD-DVSEAGAYAVKHERDGMNIGNLYAGL-------------EHLQSHAVRH 109
Query: 214 QTFGAPGPVMNQTQA-QASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRE 272
P ++ Q Q +T + P+ +P RVRARRGQATDPHSIAERLRRE
Sbjct: 110 SV-----PSIHHVQPFQGPPTTSTTVTVPHPPSIRP--RVRARRGQATDPHSIAERLRRE 162
Query: 273 RIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADM 332
RI+ER+KALQELVP+ NKTD+A+MLDEI+DYVKFL+LQVKVLSMSRLGGA+AVA LVAD+
Sbjct: 163 RISERIKALQELVPSCNKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGASAVAQLVADI 222
Query: 333 ---SSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGL 389
S EG G R+ +N TE +VAKLMEED+G+AMQYLQ K L
Sbjct: 223 PLQSVEGDSG------ESRSNQHIWDKWSN---VDTEREVAKLMEEDVGAAMQYLQSKSL 273
Query: 390 CLMPISLATAI 400
C+MPISLA I
Sbjct: 274 CIMPISLAALI 284
>gi|413968544|gb|AFW90609.1| basic helix-loop-helix protein BHLH3 [Solanum tuberosum]
Length = 303
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 121/155 (78%), Gaps = 12/155 (7%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERI+ER+KALQELVP+ NKTD+A+MLDEI+DYVKFL+
Sbjct: 138 RPRVRARRGQATDPHSIAERLRRERISERIKALQELVPSCNKTDRAAMLDEILDYVKFLR 197
Query: 309 LQVKVLSMSRLGGAAAVAPLVADM---SSEGGGGGDCIQANGRNPNGAQTTSANDSLTVT 365
LQVKVLSMSRLGGA+AVA LVAD+ S EG G ++N R + T
Sbjct: 198 LQVKVLSMSRLGGASAVAQLVADIPLQSVEGDSGES--RSNQRIWDKWSNVD-------T 248
Query: 366 EHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
E +VAKLMEED+G+AMQYLQ K LC+MPISLA I
Sbjct: 249 EQEVAKLMEEDVGAAMQYLQSKSLCIMPISLAALI 283
>gi|326498007|dbj|BAJ94866.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 481
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/191 (56%), Positives = 128/191 (67%), Gaps = 24/191 (12%)
Query: 219 PGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERM 278
P P+ + Q ++G G P R RARRGQATDPHSIAERLRRE+I+ERM
Sbjct: 293 PIPISHSADVQHKANSGNGNSASAKP------RARARRGQATDPHSIAERLRREKISERM 346
Query: 279 KALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGG 338
K LQ+LVPN+NK DK+SMLDEIIDYVKFLQLQVKVLSMSRLG AV PL+A+ +EG
Sbjct: 347 KNLQDLVPNSNKADKSSMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLAESQTEG-- 404
Query: 339 GGDCIQANGRNPNGAQTTS--------ANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLC 390
+P + TTS +DSL V E +V KLME + +AMQYLQ KGLC
Sbjct: 405 -------RSNSPLSSPTTSQGLLDVAGPDDSL-VFEQEVIKLMETSITNAMQYLQNKGLC 456
Query: 391 LMPISLATAIS 401
LMPI+LA+AIS
Sbjct: 457 LMPIALASAIS 467
>gi|212724016|ref|NP_001131264.1| uncharacterized protein LOC100192577 [Zea mays]
gi|194691028|gb|ACF79598.1| unknown [Zea mays]
gi|323388613|gb|ADX60111.1| bHLH transcription factor [Zea mays]
Length = 438
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/183 (57%), Positives = 125/183 (68%), Gaps = 14/183 (7%)
Query: 220 GPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMK 279
GPV + + Q ++ G G K RVRARRGQATDPHSIAERLRRE+I++RMK
Sbjct: 257 GPVSHPSDVQTQPNSAVNGVGV-------KPRVRARRGQATDPHSIAERLRREKISDRMK 309
Query: 280 ALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGG 339
LQ+LVPN+NK DKASMLDEIIDYVKFLQLQVKVLSMSR+G AV PL+ + +EG G
Sbjct: 310 NLQDLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRVGAPGAVLPLLTESKTEGYHG 369
Query: 340 GDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATA 399
P G ++ V E +V KLME + SAMQYLQ KGLCLMP++LA+A
Sbjct: 370 QPL-------PQGLLDALDSEDSFVFEEEVVKLMETSITSAMQYLQSKGLCLMPVALASA 422
Query: 400 IST 402
IST
Sbjct: 423 IST 425
>gi|413943961|gb|AFW76610.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 473
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/183 (57%), Positives = 125/183 (68%), Gaps = 14/183 (7%)
Query: 220 GPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMK 279
GPV + + Q ++ G G K RVRARRGQATDPHSIAERLRRE+I++RMK
Sbjct: 292 GPVSHPSDVQTQPNSAVNGVGV-------KPRVRARRGQATDPHSIAERLRREKISDRMK 344
Query: 280 ALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGG 339
LQ+LVPN+NK DKASMLDEIIDYVKFLQLQVKVLSMSR+G AV PL+ + +EG G
Sbjct: 345 NLQDLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRVGAPGAVLPLLTESKTEGYHG 404
Query: 340 GDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATA 399
P G ++ V E +V KLME + SAMQYLQ KGLCLMP++LA+A
Sbjct: 405 QPL-------PQGLLDALDSEDSFVFEEEVVKLMETSITSAMQYLQSKGLCLMPVALASA 457
Query: 400 IST 402
IST
Sbjct: 458 IST 460
>gi|255550301|ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
gi|223544687|gb|EEF46203.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
Length = 592
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/180 (57%), Positives = 126/180 (70%), Gaps = 13/180 (7%)
Query: 223 MNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQ 282
++QT + A ++ G G K RVRARRGQATDPHSIAERLRRE+IAERMK LQ
Sbjct: 331 LSQTASTAPAASCNGTG---------KPRVRARRGQATDPHSIAERLRREKIAERMKNLQ 381
Query: 283 ELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDC 342
ELVPN++K DKASMLDEII+YVKFLQLQVKVLSMSRLG AV PL+ D +EG
Sbjct: 382 ELVPNSSKVDKASMLDEIIEYVKFLQLQVKVLSMSRLGATGAVIPLITDGQAEGSNSLSL 441
Query: 343 IQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIST 402
+ G G ++D + EH+V KL+E ++ A+QYLQGKG CLMPI+LA AIS+
Sbjct: 442 STSAGL---GIDVAPSSDQIAF-EHEVLKLLESNVTKAIQYLQGKGFCLMPIALAAAISS 497
>gi|413968542|gb|AFW90608.1| beta-fructofuranosidase protein [Solanum tuberosum]
Length = 298
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/308 (42%), Positives = 170/308 (55%), Gaps = 37/308 (12%)
Query: 96 NNVPAGFQFDESM--ILASKMRQHQISGNTGSGNNNSAAAKFMMQQQQQQIMMAAARGGI 153
NN P + D+ + ILA + +G ++ +A + Q QQQ++ +
Sbjct: 3 NNAPEIYAADDFLEKILAIPSYASLPVTDISAGASSENSASGISQLQQQRLF------PL 56
Query: 154 GLPLSLGNGGDNDIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQVRSMPG 213
GL L G G NDI F Q + + N ++G HLQ
Sbjct: 57 GLSLDNGFAGANDI---GGF--QVKTEREAMHMGNSYSG----------LEHLQ-----S 96
Query: 214 QTFGAPGPVMNQTQ-AQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRE 272
P ++Q Q Q ++ + PA P RVRARRGQATDPHSIAERLRRE
Sbjct: 97 HAVCLSVPQVHQVQPFQGHPTSSTTVTIPHQPAIHP--RVRARRGQATDPHSIAERLRRE 154
Query: 273 RIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADM 332
RI+ER+KALQELVPN NKTD+A+++DEI+DYVKFL+LQVKVLSMSRLGG +AVA LV D+
Sbjct: 155 RISERIKALQELVPNCNKTDRAALVDEILDYVKFLRLQVKVLSMSRLGGTSAVAQLVTDI 214
Query: 333 SSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLM 392
+ G C Q S + TE +VAKLM ED+G+AMQYLQ K LC+M
Sbjct: 215 PLQSVEGDSC------ESRSNQHVWEKWSDSETEQEVAKLMGEDVGTAMQYLQSKSLCIM 268
Query: 393 PISLATAI 400
P+SLA I
Sbjct: 269 PVSLAALI 276
>gi|224068580|ref|XP_002326150.1| predicted protein [Populus trichocarpa]
gi|222833343|gb|EEE71820.1| predicted protein [Populus trichocarpa]
Length = 456
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 131/216 (60%), Gaps = 28/216 (12%)
Query: 207 QVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIA 266
Q+ SMP T AP G G G K RVRARRG ATDPHSIA
Sbjct: 216 QLSSMPQTTSAAP----------VEGCNGTG-----------KTRVRARRGHATDPHSIA 254
Query: 267 ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
ERLRRE+IAERMK LQELVPN+NK DKASMLDEII+YVKFLQLQVKVLSMSRLG A AV
Sbjct: 255 ERLRREKIAERMKNLQELVPNSNKVDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAGAVI 314
Query: 327 PLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQG 386
PL+ D EG + G G + + D + E +V KL+E D+ AMQYLQ
Sbjct: 315 PLLTDGQPEGHNSLSLSPSAGL---GIDISPSADQIAF-EQEVLKLLESDVTMAMQYLQS 370
Query: 387 KGLCLMPISLATAISTATCHSRNPIISTSNNNNNNG 422
KGLCLMPI+LA AIS+ +TS NNG
Sbjct: 371 KGLCLMPIALAAAISSVKASLSG---TTSEERKNNG 403
>gi|125539931|gb|EAY86326.1| hypothetical protein OsI_07700 [Oryza sativa Indica Group]
Length = 524
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 142/233 (60%), Gaps = 43/233 (18%)
Query: 203 FHHLQVRSM---PGQTFGAPGPVMNQTQAQASGSTGGGGGGG-----------------N 242
HHL + S+ P +F A Q+ Q + + GG GG +
Sbjct: 250 LHHLNLSSLISGPLASFNA-----TQSHRQPAEACGGKNGGAAPFVNLSEVLPKGNGSGS 304
Query: 243 TPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIID 302
PK RVRARRGQATDPHSIAERLRRE+I++RMK LQELVPN+NKT+KASMLDEIID
Sbjct: 305 AGNGAPKPRVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASMLDEIID 364
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSAN--- 359
YVKFLQLQVKVLSMSRLG A AV PL+ + +E G + R+ +G + A
Sbjct: 365 YVKFLQLQVKVLSMSRLGAAEAVVPLLTETQTESPG----FLLSPRSSSGERQAGAGAVT 420
Query: 360 -----------DSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 401
D + E +V KLME++M +AMQYLQ KGLCLMP++LA+AIS
Sbjct: 421 GGLPGDQPELLDGGAMFEQEVVKLMEDNMTTAMQYLQSKGLCLMPVALASAIS 473
>gi|46390356|dbj|BAD15821.1| putative bHLH transcription factor PTF1 [Oryza sativa Japonica
Group]
gi|215768923|dbj|BAH01152.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623080|gb|EEE57212.1| hypothetical protein OsJ_07173 [Oryza sativa Japonica Group]
Length = 524
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 142/233 (60%), Gaps = 43/233 (18%)
Query: 203 FHHLQVRSM---PGQTFGAPGPVMNQTQAQASGSTGGGGGGG-----------------N 242
HHL + S+ P +F A Q+ Q + + GG GG +
Sbjct: 250 LHHLNLSSLISGPLASFNA-----TQSHRQPAEACGGKNGGAAPFVNLSEVLPKGNGSGS 304
Query: 243 TPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIID 302
PK RVRARRGQATDPHSIAERLRRE+I++RMK LQELVPN+NKT+KASMLDEIID
Sbjct: 305 AGNGAPKPRVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASMLDEIID 364
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSAN--- 359
YVKFLQLQVKVLSMSRLG A AV PL+ + +E G + R+ +G + A
Sbjct: 365 YVKFLQLQVKVLSMSRLGAAEAVVPLLTETQTESPG----FLLSPRSSSGERQAGAGAVT 420
Query: 360 -----------DSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 401
D + E +V KLME++M +AMQYLQ KGLCLMP++LA+AIS
Sbjct: 421 GGLPGDQPELLDGGAMFEQEVVKLMEDNMTTAMQYLQSKGLCLMPVALASAIS 473
>gi|115345831|gb|ABI95371.1| PTF1 [Triticum aestivum]
Length = 480
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 124/187 (66%), Gaps = 16/187 (8%)
Query: 219 PGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERM 278
P P+ + AQ ++ G P R RARRGQATDPHSIAERLRRE+I+ERM
Sbjct: 292 PVPISHSADAQNKANSANGNSASAKP------RARARRGQATDPHSIAERLRREKISERM 345
Query: 279 KALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGG 338
K LQ+LVPN+NK DK+SMLDEIIDYVKFLQLQVKVL MSRLG AV PL+A+ +EG
Sbjct: 346 KNLQDLVPNSNKADKSSMLDEIIDYVKFLQLQVKVLCMSRLGAPGAVLPLLAESQTEGRS 405
Query: 339 GGDCIQANGRNPNGAQ----TTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPI 394
+P +Q DSL V E +V KLME + +AMQYLQ KGLCLMPI
Sbjct: 406 NSPL-----SSPTASQGLLDAAGPEDSL-VFEQEVIKLMETSITNAMQYLQNKGLCLMPI 459
Query: 395 SLATAIS 401
+LA+AIS
Sbjct: 460 ALASAIS 466
>gi|302801892|ref|XP_002982702.1| hypothetical protein SELMODRAFT_422025 [Selaginella moellendorffii]
gi|300149801|gb|EFJ16455.1| hypothetical protein SELMODRAFT_422025 [Selaginella moellendorffii]
Length = 443
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/151 (70%), Positives = 118/151 (78%), Gaps = 12/151 (7%)
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
GQATDPHSIAERLRRERIAERMK+LQELVPN+NKTDKASMLDEIIDYVKFLQLQVKVLSM
Sbjct: 264 GQATDPHSIAERLRRERIAERMKSLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSM 323
Query: 317 SRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEED 376
SRLG A AV + D+ E + A G+ NGAQ D + +TE QVAKLMEED
Sbjct: 324 SRLGNAGAV---MTDLPPE--DSNQFLAALGQ--NGAQ-----DGIALTERQVAKLMEED 371
Query: 377 MGSAMQYLQGKGLCLMPISLATAISTATCHS 407
MGSAMQYLQ KGLCLMPI LA+ +S + +S
Sbjct: 372 MGSAMQYLQNKGLCLMPIHLASNMSKTSNNS 402
>gi|302798949|ref|XP_002981234.1| hypothetical protein SELMODRAFT_444782 [Selaginella moellendorffii]
gi|300151288|gb|EFJ17935.1| hypothetical protein SELMODRAFT_444782 [Selaginella moellendorffii]
Length = 443
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/151 (70%), Positives = 118/151 (78%), Gaps = 12/151 (7%)
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
GQATDPHSIAERLRRERIAERMK+LQELVPN+NKTDKASMLDEIIDYVKFLQLQVKVLSM
Sbjct: 264 GQATDPHSIAERLRRERIAERMKSLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSM 323
Query: 317 SRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEED 376
SRLG A AV + D+ E + A G+ NGAQ D + +TE QVAKLMEED
Sbjct: 324 SRLGNAGAV---MTDLPPE--DSNQFLAALGQ--NGAQ-----DGIALTERQVAKLMEED 371
Query: 377 MGSAMQYLQGKGLCLMPISLATAISTATCHS 407
MGSAMQYLQ KGLCLMPI LA+ +S + +S
Sbjct: 372 MGSAMQYLQNKGLCLMPIHLASNMSKTSNNS 402
>gi|357124947|ref|XP_003564158.1| PREDICTED: uncharacterized protein LOC100841109 [Brachypodium
distachyon]
Length = 482
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/161 (62%), Positives = 117/161 (72%), Gaps = 4/161 (2%)
Query: 241 GNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEI 300
GN+ + +P R RARRGQATDPHSIAERLRRE+I+ERMK LQELVPN+NK DK+SMLDEI
Sbjct: 312 GNSVSAKP--RSRARRGQATDPHSIAERLRREKISERMKNLQELVPNSNKADKSSMLDEI 369
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSAND 360
IDYVKFLQLQVKVLSMSRLG AV PL+ + +EG + G + +
Sbjct: 370 IDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTEGHSNSSL--SGTTTSQGLLDVANPE 427
Query: 361 SLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 401
V E +V KLME + SAMQYLQ KGLCLMPI+LA+AIS
Sbjct: 428 DSVVFEQEVIKLMETSITSAMQYLQNKGLCLMPIALASAIS 468
>gi|224131266|ref|XP_002328496.1| predicted protein [Populus trichocarpa]
gi|222838211|gb|EEE76576.1| predicted protein [Populus trichocarpa]
Length = 182
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/157 (66%), Positives = 120/157 (76%), Gaps = 10/157 (6%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRR RI ER+KALQELVP NKTD+A+MLDEI+DYVKFL+
Sbjct: 17 RPRVRARRGQATDPHSIAERLRRVRITERVKALQELVPTCNKTDRAAMLDEIVDYVKFLR 76
Query: 309 LQVKVLSMSRLGGAAAVAPLVAD--MSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTE 366
LQVKVLSMSRLG A AVA LVAD +SS G G + G N + S ND TE
Sbjct: 77 LQVKVLSMSRLGAAGAVAQLVADVPLSSVQGEGIE----GGANQQAWENWS-NDG---TE 128
Query: 367 HQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTA 403
+VAKLMEED+G+AMQ LQ K LC+MP+SLA+AI A
Sbjct: 129 QEVAKLMEEDVGAAMQLLQSKALCIMPVSLASAIFRA 165
>gi|125554388|gb|EAY99993.1| hypothetical protein OsI_21996 [Oryza sativa Indica Group]
Length = 477
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K R RARRGQATDPHSIAERLRRE+I+ERMK LQ+LVPN+NK DKASMLDEIIDYVKFLQ
Sbjct: 312 KPRTRARRGQATDPHSIAERLRREKISERMKNLQDLVPNSNKADKASMLDEIIDYVKFLQ 371
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLG AV PL+ + +E + A+ + + DS + E +
Sbjct: 372 LQVKVLSMSRLGAPGAVLPLLRESQTE-CHSNPSLSASTISQGPTDMPDSEDS-SAFEQE 429
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 401
V KLME + SAMQYLQ KGLCLMPI+LA+AIS
Sbjct: 430 VVKLMETSITSAMQYLQNKGLCLMPIALASAIS 462
>gi|357142621|ref|XP_003572635.1| PREDICTED: uncharacterized protein LOC100834217 [Brachypodium
distachyon]
Length = 479
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/163 (60%), Positives = 122/163 (74%), Gaps = 8/163 (4%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
PK RVRARRGQATDPHSIAERLRRE+I++RMK LQELVPN+NKTDKASML+EII+Y+KFL
Sbjct: 278 PKARVRARRGQATDPHSIAERLRREKISDRMKNLQELVPNSNKTDKASMLEEIIEYIKFL 337
Query: 308 QLQVKVLSMSRLGGAAAVAPLVADMSSEG-----GGGGDCIQANGRNPNGAQTTSANDSL 362
QLQ KVLSMSRLG A+ PL+ D +E G A G+ G + T ++D +
Sbjct: 338 QLQTKVLSMSRLGATDALVPLLMDSHNESSGLVMGSPKSGAAAGGKGHAGHRQTDSDDFV 397
Query: 363 ---TVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIST 402
V E +VA++ME++M AMQYLQ +GLCLMPI+LA+AIS
Sbjct: 398 EDKVVLEQEVAQMMEDNMTMAMQYLQNRGLCLMPITLASAISV 440
>gi|312281971|dbj|BAJ33851.1| unnamed protein product [Thellungiella halophila]
Length = 310
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 112/176 (63%), Positives = 127/176 (72%), Gaps = 8/176 (4%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER++ALQELVP NKTD+A+M+DEI+DYVKFL+
Sbjct: 143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVAPLV DM D GR P A +ND TE Q
Sbjct: 203 LQVKVLSMSRLGGAGAVAPLVTDMPLS-SSVEDETSDGGRTPQPAWEKWSNDG---TERQ 258
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNNGNP 424
VAKLMEE++G+AMQ LQ K LC+MPISLA AI CHS+ P S+ N P
Sbjct: 259 VAKLMEENVGAAMQLLQSKALCMMPISLAMAI----CHSQPPDTSSVVKPETNPPP 310
>gi|29424047|gb|AAO73566.1| bHLH transcription factor PTF1 [Oryza sativa]
Length = 478
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 113/153 (73%), Gaps = 2/153 (1%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K R RARRGQATDPHSIAERLRRE+I+ERMK LQ LVPN+NK DKASMLDEIIDYVKFLQ
Sbjct: 313 KPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQ 372
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLG AV PL+ + +E + A+ + + DS + E +
Sbjct: 373 LQVKVLSMSRLGAPGAVLPLLRESQTE-CHSNPSLSASTISQGPTDMPDSEDS-SAFEQE 430
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 401
V KLME + SAMQYLQ KGLCLMPI+LA+AIS
Sbjct: 431 VVKLMETSIISAMQYLQNKGLCLMPIALASAIS 463
>gi|194396125|gb|ACF60480.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 478
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 113/153 (73%), Gaps = 2/153 (1%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K R RARRGQATDPHSIAERLRRE+I+ERMK LQ LVPN+NK DKASMLDEIIDYVKFLQ
Sbjct: 313 KPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQ 372
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLG AV PL+ + +E + A+ + + DS + E +
Sbjct: 373 LQVKVLSMSRLGAPGAVLPLLRESQTE-CHSNPSLSASTISQGPPDMPDSEDS-SAFEQE 430
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 401
V KLME + SAMQYLQ KGLCLMPI+LA+AIS
Sbjct: 431 VVKLMETSIISAMQYLQNKGLCLMPIALASAIS 463
>gi|115466888|ref|NP_001057043.1| Os06g0193400 [Oryza sativa Japonica Group]
gi|51090797|dbj|BAD35275.1| bHLH transcription factor PTF1 [Oryza sativa Japonica Group]
gi|113595083|dbj|BAF18957.1| Os06g0193400 [Oryza sativa Japonica Group]
gi|125596339|gb|EAZ36119.1| hypothetical protein OsJ_20430 [Oryza sativa Japonica Group]
gi|215686762|dbj|BAG89612.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 478
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 113/153 (73%), Gaps = 2/153 (1%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K R RARRGQATDPHSIAERLRRE+I+ERMK LQ LVPN+NK DKASMLDEIIDYVKFLQ
Sbjct: 313 KPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQ 372
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLG AV PL+ + +E + A+ + + DS + E +
Sbjct: 373 LQVKVLSMSRLGAPGAVLPLLRESQTE-CHSNPSLSASTISQGPPDMPDSEDS-SAFEQE 430
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 401
V KLME + SAMQYLQ KGLCLMPI+LA+AIS
Sbjct: 431 VVKLMETSIISAMQYLQNKGLCLMPIALASAIS 463
>gi|51090798|dbj|BAD35276.1| putative bHLH transcription factor PTF1 [Oryza sativa Japonica
Group]
Length = 401
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 113/153 (73%), Gaps = 2/153 (1%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K R RARRGQATDPHSIAERLRRE+I+ERMK LQ LVPN+NK DKASMLDEIIDYVKFLQ
Sbjct: 236 KPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQ 295
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLG AV PL+ + +E + A+ + + DS + E +
Sbjct: 296 LQVKVLSMSRLGAPGAVLPLLRESQTE-CHSNPSLSASTISQGPPDMPDSEDS-SAFEQE 353
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 401
V KLME + SAMQYLQ KGLCLMPI+LA+AIS
Sbjct: 354 VVKLMETSIISAMQYLQNKGLCLMPIALASAIS 386
>gi|18411987|ref|NP_567245.1| transcription factor UNE12 [Arabidopsis thaliana]
gi|79324985|ref|NP_001031577.1| transcription factor UNE12 [Arabidopsis thaliana]
gi|75277341|sp|O22768.2|UNE12_ARATH RecName: Full=Transcription factor UNE12; AltName: Full=Basic
helix-loop-helix protein 59; Short=AtbHLH59; Short=bHLH
59; AltName: Full=Protein UNFERTILIZED EMBRYO SAC 12;
AltName: Full=Transcription factor EN 93; AltName:
Full=bHLH transcription factor bHLH059
gi|13605859|gb|AAK32915.1|AF367328_1 AT4g02590/T10P11_13 [Arabidopsis thaliana]
gi|3892050|gb|AAC78259.1| hypothetical protein [Arabidopsis thaliana]
gi|7269019|emb|CAB80752.1| hypothetical protein [Arabidopsis thaliana]
gi|23506061|gb|AAN28890.1| At4g02590/T10P11_13 [Arabidopsis thaliana]
gi|222422973|dbj|BAH19471.1| AT4G02590 [Arabidopsis thaliana]
gi|332656799|gb|AEE82199.1| transcription factor UNE12 [Arabidopsis thaliana]
gi|332656800|gb|AEE82200.1| transcription factor UNE12 [Arabidopsis thaliana]
Length = 310
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 113/179 (63%), Positives = 128/179 (71%), Gaps = 20/179 (11%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER++ALQELVP NKTD+A+M+DEI+DYVKFL+
Sbjct: 143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202
Query: 309 LQVKVLSMSRLGGAAAVAPLVADM------SSEGGGGGDCIQANGRNPNGAQTTSANDSL 362
LQVKVLSMSRLGGA AVAPLV DM E G G GR P A +ND
Sbjct: 203 LQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGEG-------GRTPQPAWEKWSNDG- 254
Query: 363 TVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNN 421
TE QVAKLMEE++G+AMQ LQ K LC+MPISLA AI HS+ P S+ NN
Sbjct: 255 --TERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAI----YHSQPPDTSSVVKPENN 307
>gi|20127058|gb|AAM10948.1|AF488592_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 310
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 111/173 (64%), Positives = 126/173 (72%), Gaps = 8/173 (4%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER++ALQELVP NKTD+A+M+DEI+DYVKFL+
Sbjct: 143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVAPLV DM D GR P A +ND TE Q
Sbjct: 203 LQVKVLSMSRLGGAGAVAPLVTDMPL-SSSVXDETGEGGRTPQPAWEKWSNDG---TERQ 258
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNN 421
VAKLMEE++G+AMQ LQ K LC+MPISLA AI HS+ P S+ NN
Sbjct: 259 VAKLMEENVGAAMQLLQSKALCMMPISLAMAI----YHSQPPDTSSVVKPENN 307
>gi|186511471|ref|NP_001118919.1| transcription factor UNE12 [Arabidopsis thaliana]
gi|332656801|gb|AEE82201.1| transcription factor UNE12 [Arabidopsis thaliana]
Length = 247
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 113/179 (63%), Positives = 128/179 (71%), Gaps = 20/179 (11%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER++ALQELVP NKTD+A+M+DEI+DYVKFL+
Sbjct: 80 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 139
Query: 309 LQVKVLSMSRLGGAAAVAPLVADM------SSEGGGGGDCIQANGRNPNGAQTTSANDSL 362
LQVKVLSMSRLGGA AVAPLV DM E G G GR P A +ND
Sbjct: 140 LQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGEG-------GRTPQPAWEKWSNDG- 191
Query: 363 TVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNN 421
TE QVAKLMEE++G+AMQ LQ K LC+MPISLA AI HS+ P S+ NN
Sbjct: 192 --TERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAI----YHSQPPDTSSVVKPENN 244
>gi|297809891|ref|XP_002872829.1| hypothetical protein ARALYDRAFT_490301 [Arabidopsis lyrata subsp.
lyrata]
gi|297318666|gb|EFH49088.1| hypothetical protein ARALYDRAFT_490301 [Arabidopsis lyrata subsp.
lyrata]
Length = 310
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/176 (64%), Positives = 128/176 (72%), Gaps = 14/176 (7%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER++ALQELVP NKTD+A+M+DEI+DYVKFL+
Sbjct: 143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202
Query: 309 LQVKVLSMSRLGGAAAVAPLVADM---SSEGGGGGDCIQANGRNPNGAQTTSANDSLTVT 365
LQVKVLSMSRLGGA AVAPLV DM SS GD GR P A +ND T
Sbjct: 203 LQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGD----GGRTPQPAWEKWSNDG---T 255
Query: 366 EHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNN 421
E QVAKLMEE++G+AMQ LQ K LC+MPISLA AI HS+ P S+ N
Sbjct: 256 ERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAI----YHSQPPDTSSVVKPETN 307
>gi|21593792|gb|AAM65759.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 310
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 127/179 (70%), Gaps = 20/179 (11%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER++ALQELVP NKTD+A+M+DEI+DYVKFL+
Sbjct: 143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202
Query: 309 LQVKVLSMSRLGGAAAVAPLVADM------SSEGGGGGDCIQANGRNPNGAQTTSANDSL 362
LQVKVLSMSRLGG AVAPLV DM E G G GR P A +ND
Sbjct: 203 LQVKVLSMSRLGGVGAVAPLVTDMPLSSSVEDETGEG-------GRTPQPAWEKWSNDG- 254
Query: 363 TVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNN 421
TE QVAKLMEE++G+AMQ LQ K LC+MPISLA AI HS+ P S+ NN
Sbjct: 255 --TERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAI----YHSQPPDTSSVVKPENN 307
>gi|357440519|ref|XP_003590537.1| Transcription factor UNE12 [Medicago truncatula]
gi|355479585|gb|AES60788.1| Transcription factor UNE12 [Medicago truncatula]
Length = 285
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/159 (69%), Positives = 128/159 (80%), Gaps = 12/159 (7%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA +P RVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+DY
Sbjct: 117 PAMRP--RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDY 174
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVAD--MSSEGGGGGDCIQANGRNPNGAQTTSANDS 361
VKFL+LQVKVLSMSRLGGA AVAPLV D +SS G D +GRN A +ND
Sbjct: 175 VKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSD----SGRN-QPAWEKWSNDG 229
Query: 362 LTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
TE QVAKLMEE++G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 230 ---TEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAI 265
>gi|357440517|ref|XP_003590536.1| Transcription factor UNE12 [Medicago truncatula]
gi|355479584|gb|AES60787.1| Transcription factor UNE12 [Medicago truncatula]
Length = 282
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/159 (69%), Positives = 128/159 (80%), Gaps = 12/159 (7%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA +P RVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+DY
Sbjct: 114 PAMRP--RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDY 171
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVAD--MSSEGGGGGDCIQANGRNPNGAQTTSANDS 361
VKFL+LQVKVLSMSRLGGA AVAPLV D +SS G D +GRN A +ND
Sbjct: 172 VKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSD----SGRN-QPAWEKWSNDG 226
Query: 362 LTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
TE QVAKLMEE++G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 227 ---TEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAI 262
>gi|225437207|ref|XP_002281626.1| PREDICTED: transcription factor UNE12 [Vitis vinifera]
gi|297735488|emb|CBI17928.3| unnamed protein product [Vitis vinifera]
Length = 289
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 132/182 (72%), Gaps = 24/182 (13%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA +P RVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+DY
Sbjct: 121 PAIRP--RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDY 178
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVADM--------SSEGGGGGDCIQANGRNPNGAQT 355
VKFL+LQVKVLSMSRLGGA AVAPLV D+ +SEG GRN A
Sbjct: 179 VKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLASVEEEASEG----------GRN-EPAWE 227
Query: 356 TSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTS 415
+ND TE QVAKLMEE++G+AMQ+LQ K LC+MPISLA+AI + P+I
Sbjct: 228 KWSNDG---TERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHSQQPDTTPLIKPQ 284
Query: 416 NN 417
N
Sbjct: 285 TN 286
>gi|255559915|ref|XP_002520976.1| DNA binding protein, putative [Ricinus communis]
gi|223539813|gb|EEF41393.1| DNA binding protein, putative [Ricinus communis]
Length = 299
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 130/178 (73%), Gaps = 20/178 (11%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+DYVKFL+
Sbjct: 134 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLR 193
Query: 309 LQVKVLSMSRLGGAAAVAPLVADM-----SSEGGGGGDCIQANGRNPNGAQTTSANDSLT 363
LQVKVLSMSRLGGA AVAPLV D+ E G G GRN A +ND
Sbjct: 194 LQVKVLSMSRLGGAGAVAPLVTDIPLSSVEDETGEG-------GRN-QPAWEKWSNDG-- 243
Query: 364 VTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNNNNN 421
TE QVAKLMEE++G+AMQ+LQ K LC+MPISLATAI H++ P ST N
Sbjct: 244 -TERQVAKLMEENVGAAMQFLQSKALCIMPISLATAI----YHTQAPDTSTIVKPETN 296
>gi|356572238|ref|XP_003554277.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 292
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 131/179 (73%), Gaps = 18/179 (10%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA +P RVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+DY
Sbjct: 124 PAIRP--RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDY 181
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVADM-----SSEGGGGGDCIQANGRNPNGAQTTSA 358
VKFL+LQVKVLSMSRLGGA AVAPLV D+ EGG G RN A +
Sbjct: 182 VKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEG-------ARN-RPAWDKWS 233
Query: 359 NDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNN 417
ND TE QVAKLMEE++G+AMQ+LQ K LC+MPISLA+AI + + I+ N
Sbjct: 234 NDG---TERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETN 289
>gi|356504971|ref|XP_003521266.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 292
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 126/162 (77%), Gaps = 18/162 (11%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA +P RVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+DY
Sbjct: 124 PAIRP--RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDY 181
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVADM-----SSEGGGGGDCIQANGRNPNGAQTTSA 358
VKFL+LQVKVLSMSRLGGA AVAPLV D+ EGG G RN A +
Sbjct: 182 VKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEG-------ARN-RPAWDKWS 233
Query: 359 NDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
ND TE QVAKLMEE++G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 234 NDG---TERQVAKLMEENVGAAMQFLQSKALCIMPISLASAI 272
>gi|449458442|ref|XP_004146956.1| PREDICTED: transcription factor UNE12-like [Cucumis sativus]
gi|449503810|ref|XP_004162188.1| PREDICTED: transcription factor UNE12-like [Cucumis sativus]
Length = 316
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/192 (60%), Positives = 137/192 (71%), Gaps = 22/192 (11%)
Query: 238 GGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASML 297
G + PA +P RVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+ML
Sbjct: 142 GAAPHPPAMRP--RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAML 199
Query: 298 DEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADM-----SSEGGGGGDCIQANGRNPNG 352
DEI+DYVKFL+LQVKVLSMSRLGGA AVAPLV D+ EG G GRN
Sbjct: 200 DEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEG-------GRN-QP 251
Query: 353 AQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPII 412
A +ND TE QVAKLMEE++G+AMQ+LQ K LC+MPISLA+AI H++ P
Sbjct: 252 AWDKWSNDG---TERQVAKLMEENVGAAMQFLQSKALCIMPISLASAI----YHTQPPDS 304
Query: 413 STSNNNNNNGNP 424
S+ +N P
Sbjct: 305 SSVVKPESNPPP 316
>gi|224066311|ref|XP_002302077.1| predicted protein [Populus trichocarpa]
gi|222843803|gb|EEE81350.1| predicted protein [Populus trichocarpa]
Length = 300
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/183 (61%), Positives = 133/183 (72%), Gaps = 22/183 (12%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA +P RVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+DY
Sbjct: 132 PAMRP--RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDY 189
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVADM-----SSEGGGGGDCIQANGRNPNGAQTTSA 358
VKFL+LQVK+LSMSRLGGA AVAPLV D+ E G G GRN A +
Sbjct: 190 VKFLRLQVKILSMSRLGGAGAVAPLVTDIPLSPVEDETGEG-------GRN-QLAWEKWS 241
Query: 359 NDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNNN 418
ND TE QVAKLMEE++G+AMQ+LQ K LC+MPI+LATAI H++ P +T
Sbjct: 242 NDG---TERQVAKLMEENVGAAMQFLQSKALCIMPITLATAI----YHTQPPDTTTIVKP 294
Query: 419 NNN 421
N
Sbjct: 295 ETN 297
>gi|223702398|gb|ACN21630.1| putative basic helix-loop-helix protein BHLH3 [Lotus japonicus]
Length = 297
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/164 (67%), Positives = 127/164 (77%), Gaps = 18/164 (10%)
Query: 242 NTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEII 301
+ PA +P RVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+
Sbjct: 127 HPPAMRP--RVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIV 184
Query: 302 DYVKFLQLQVKVLSMSRLGGAAAVAPLVADM-----SSEGGGGGDCIQANGRNPNGAQTT 356
DYVKFL+LQVKVLSMSRLGGA AVAPLV D+ EGG G RN A
Sbjct: 185 DYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEG-------ARN-RPAWDK 236
Query: 357 SANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
+ND TE QVAKLMEE++G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 237 WSNDG---TEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAI 277
>gi|223702400|gb|ACN21631.1| putative basic helix-loop-helix protein BHLH4 [Lotus japonicus]
Length = 275
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 120/152 (78%), Gaps = 16/152 (10%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A MLDEI+DYVKFL+
Sbjct: 120 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAVMLDEIVDYVKFLR 179
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVAPL EGG G GRN A +ND TE Q
Sbjct: 180 LQVKVLSMSRLGGAGAVAPL-----EEGGEG-------GRN-QPAWEKWSNDG---TEKQ 223
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
VAKLMEE++G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 224 VAKLMEENIGAAMQFLQSKALCIMPISLASAI 255
>gi|334182257|ref|NP_001184895.1| transcription factor bHLH7 [Arabidopsis thaliana]
gi|4587574|gb|AAD25805.1|AC006550_13 Contains PF|00010 helix-loop-helix DNA-binding domain. ESTs
gb|T45640 and gb|T22783 come from this gene [Arabidopsis
thaliana]
gi|332189398|gb|AEE27519.1| transcription factor bHLH7 [Arabidopsis thaliana]
Length = 297
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/167 (63%), Positives = 123/167 (73%), Gaps = 15/167 (8%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER+++LQELVP NKTD+A+M+DEI+DYVKFL+
Sbjct: 136 RPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLR 195
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVAPLV +M D QA +ND TE Q
Sbjct: 196 LQVKVLSMSRLGGAGAVAPLVTEMPL-SSSVEDETQA-------VWEKWSNDG---TERQ 244
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTS 415
VAKLMEE++G+AMQ LQ K LC+MPISLA AI HS+ P S+S
Sbjct: 245 VAKLMEENVGAAMQLLQSKALCIMPISLAMAI----YHSQPPDTSSS 287
>gi|18379045|ref|NP_563672.1| transcription factor bHLH7 [Arabidopsis thaliana]
gi|75305862|sp|Q93Y00.1|BH007_ARATH RecName: Full=Transcription factor bHLH7; AltName: Full=Basic
helix-loop-helix protein 7; Short=AtbHLH7; Short=bHLH 7;
AltName: Full=Transcription factor EN 92; AltName:
Full=bHLH transcription factor bHLH007
gi|21735477|gb|AAL55714.2|AF251692_1 putative transcription factor BHLH7 [Arabidopsis thaliana]
gi|15450779|gb|AAK96661.1| Unknown protein [Arabidopsis thaliana]
gi|21387097|gb|AAM47952.1| unknown protein [Arabidopsis thaliana]
gi|332189397|gb|AEE27518.1| transcription factor bHLH7 [Arabidopsis thaliana]
Length = 302
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/167 (63%), Positives = 123/167 (73%), Gaps = 15/167 (8%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER+++LQELVP NKTD+A+M+DEI+DYVKFL+
Sbjct: 141 RPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLR 200
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVAPLV +M D QA +ND TE Q
Sbjct: 201 LQVKVLSMSRLGGAGAVAPLVTEMPL-SSSVEDETQA-------VWEKWSNDG---TERQ 249
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTS 415
VAKLMEE++G+AMQ LQ K LC+MPISLA AI HS+ P S+S
Sbjct: 250 VAKLMEENVGAAMQLLQSKALCIMPISLAMAI----YHSQPPDTSSS 292
>gi|297848526|ref|XP_002892144.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297337986|gb|EFH68403.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 306
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/167 (64%), Positives = 123/167 (73%), Gaps = 15/167 (8%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER++ALQELVP NKTD+A+M+DEI+DYVKFL+
Sbjct: 145 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 204
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVAPLV +M D QA +ND TE Q
Sbjct: 205 LQVKVLSMSRLGGAGAVAPLVTEMPL-SSSTEDETQA-------VWEKWSNDG---TERQ 253
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTS 415
VAKLMEE++G+AMQ LQ K LC+MPISLA AI HS+ P S+S
Sbjct: 254 VAKLMEENVGAAMQLLQSKALCIMPISLAMAI----YHSQPPDTSSS 296
>gi|222635086|gb|EEE65218.1| hypothetical protein OsJ_20364 [Oryza sativa Japonica Group]
Length = 352
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 116/199 (58%), Gaps = 43/199 (21%)
Query: 210 SMPGQTFGAPGPVMNQTQAQASGSTG---GGGGGGNTPAQQPKQRVRARRGQATDPHSIA 266
SM GQ+FG P ASG T GGGG P +Q
Sbjct: 119 SMSGQSFGGPA---------ASGGTAPVTSSGGGGTAPPRQ------------------- 150
Query: 267 ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
+RLRRERIAERMK+LQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAA +A
Sbjct: 151 QRLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAGMA 210
Query: 327 PLVADM------------SSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLME 374
PLVA M G G G + VTE QVAK+ME
Sbjct: 211 PLVASMSSEGNSNGSSNGGGGKASKGGTGGEGGGGGGGGGGGGTGGGMRVTEQQVAKMME 270
Query: 375 EDMGSAMQYLQGKGLCLMP 393
EDMG+AMQYLQGKGLCLMP
Sbjct: 271 EDMGTAMQYLQGKGLCLMP 289
>gi|222641577|gb|EEE69709.1| hypothetical protein OsJ_29376 [Oryza sativa Japonica Group]
Length = 410
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/87 (96%), Positives = 85/87 (97%), Gaps = 2/87 (2%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ
Sbjct: 247 RQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 306
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSE 335
LQ VLSMSRLGGAAAVAPLVADMSSE
Sbjct: 307 LQ--VLSMSRLGGAAAVAPLVADMSSE 331
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 426 HNPLLQSNGEGPTSPSMSVLTVQS-----ATMGNGGADGSVKDAASVSKP 470
H P L ++G P SPSMSVLT QS G +KDAASVSKP
Sbjct: 361 HLPGLNADGSVPASPSMSVLTAQSAMANGGGGAADGEGSQLKDAASVSKP 410
>gi|312282747|dbj|BAJ34239.1| unnamed protein product [Thellungiella halophila]
Length = 308
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/152 (65%), Positives = 115/152 (75%), Gaps = 11/152 (7%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+ RVRARRGQATDPHSIAERLRRERIAER++ALQELVP +KTD+A+M+DEI+DYVKFL+
Sbjct: 147 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVSKTDRAAMIDEIVDYVKFLR 206
Query: 309 LQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQ 368
LQVKVLSMSRLGGA AVAPLV +M + G +ND TE Q
Sbjct: 207 LQVKVLSMSRLGGAGAVAPLVTEMPLSSSIEDET--------QGVWEKWSNDG---TELQ 255
Query: 369 VAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
VAKLMEE++G+AMQ LQ K LC+MPISLA AI
Sbjct: 256 VAKLMEENVGAAMQLLQSKALCIMPISLAMAI 287
>gi|356536570|ref|XP_003536810.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 283
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 122/164 (74%), Gaps = 13/164 (7%)
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
GQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+DYVKFL+LQVKVLSM
Sbjct: 127 GQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSM 186
Query: 317 SRLGGAAAVAPLVADM---SSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLM 373
SRLGGA AVAPLV D+ S E GG GRN A +ND TE QVAKLM
Sbjct: 187 SRLGGAGAVAPLVTDIPLSSVEEEGG------EGRN-QPAWEKWSNDG---TERQVAKLM 236
Query: 374 EEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSNN 417
EE++G+AMQ+LQ K LC+MP+SLA+AI + + I+ N
Sbjct: 237 EENVGAAMQFLQSKALCIMPVSLASAIYQSQPSGTSSIVKPETN 280
>gi|195620662|gb|ACG32161.1| hypothetical protein [Zea mays]
gi|413939309|gb|AFW73860.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 170
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 110/170 (64%), Gaps = 7/170 (4%)
Query: 290 KTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRN 349
+TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA AV LVA ++SEG G GD +G+
Sbjct: 6 QTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATAVGTLVAGIASEGNGSGDGTSDSGKG 65
Query: 350 PNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRN 409
SL VTE QVA+LMEEDMG+AMQYLQGKGLCLMPISLA+AIS+AT S
Sbjct: 66 NAANGENGGGGSLQVTEQQVARLMEEDMGTAMQYLQGKGLCLMPISLASAISSATWPSLL 125
Query: 410 PIISTSNNNNNNGNPHHNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADG 459
S + G H +G P SP + S+T+ + GA G
Sbjct: 126 SRPSMGAMGDARGPLH-------DGGSPASPPLVNCGDDSSTVKDAGAGG 168
>gi|356502774|ref|XP_003520191.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 274
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/147 (64%), Positives = 113/147 (76%), Gaps = 13/147 (8%)
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
GQATDPHSIAERLRRERIAER++ALQELVP+ NKTD+A+MLDEI+DYVKFL+LQVKV ++
Sbjct: 118 GQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVNAL 177
Query: 317 SRLGGAAAVAPLVADM---SSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLM 373
GGA AVAPLV D+ S E GG GRN A +ND TE QVAKLM
Sbjct: 178 XXXGGADAVAPLVTDIPLSSVEEEGG------EGRN-QPAWEKCSNDG---TERQVAKLM 227
Query: 374 EEDMGSAMQYLQGKGLCLMPISLATAI 400
EE++G+AMQ+LQ K LC+MP+SLA+AI
Sbjct: 228 EENVGAAMQFLQSKALCIMPVSLASAI 254
>gi|224082728|ref|XP_002306815.1| predicted protein [Populus trichocarpa]
gi|222856264|gb|EEE93811.1| predicted protein [Populus trichocarpa]
Length = 185
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 101/150 (67%), Gaps = 20/150 (13%)
Query: 281 LQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAD--MSSEGGG 338
LQELVP+ NKTD+A+MLDEI+DYVKFL+LQVKVLSMSRLGGA AVAPLV D +SS
Sbjct: 52 LQELVPSVNKTDRATMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEDE 111
Query: 339 GGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLAT 398
G+ GRN A +ND TE QVAKLMEE++G+AMQ+LQ K LC+MPISLAT
Sbjct: 112 TGE----GGRN-QPAWEKWSNDG---TERQVAKLMEENVGAAMQFLQSKALCIMPISLAT 163
Query: 399 AISTATCHSRNPIISTSNNNNNNGNPHHNP 428
AI H++ P + P NP
Sbjct: 164 AIY----HTQPP------DTTTIVKPETNP 183
>gi|195649667|gb|ACG44301.1| BHLH transcription factor [Zea mays]
Length = 136
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/132 (59%), Positives = 93/132 (70%), Gaps = 8/132 (6%)
Query: 278 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGG 337
M+ALQELVPN NKTD+A MLDEI+DYVKFL+LQVKVLSMSRLGGA AVA LVAD+
Sbjct: 1 MRALQELVPNTNKTDRAVMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPL--- 57
Query: 338 GGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLA 397
++ + Q S TE Q+AKLMEED+G+AMQ+LQ K LC+MPISLA
Sbjct: 58 ----SVKGEASDSGSKQQIWEKWSTDGTERQIAKLMEEDIGAAMQFLQSKALCMMPISLA 113
Query: 398 TAISTATCHSRN 409
AI T HS++
Sbjct: 114 MAIYD-TQHSQD 124
>gi|115470903|ref|NP_001059050.1| Os07g0182200 [Oryza sativa Japonica Group]
gi|113610586|dbj|BAF20964.1| Os07g0182200 [Oryza sativa Japonica Group]
gi|215694864|dbj|BAG90055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 136
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/132 (59%), Positives = 94/132 (71%), Gaps = 8/132 (6%)
Query: 278 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGG 337
M+ALQ+LVPN NKTD+A+MLDEI+DYVKFL+LQVKVLSMSRLGGA AVA LVAD+
Sbjct: 1 MRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPI--- 57
Query: 338 GGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLA 397
++ + Q S TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA
Sbjct: 58 ----SVKGEASDSGSKQQIWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMPISLA 113
Query: 398 TAISTATCHSRN 409
AI T HS++
Sbjct: 114 MAIYD-TQHSQD 124
>gi|413924221|gb|AFW64153.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 230
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/84 (82%), Positives = 71/84 (84%)
Query: 268 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 327
+LRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAV P
Sbjct: 140 QLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVGP 199
Query: 328 LVADMSSEGGGGGDCIQANGRNPN 351
LVA M+SE IQ R PN
Sbjct: 200 LVASMASERHQRPRLIQLKLRGPN 223
>gi|413937341|gb|AFW71892.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 425
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 74/98 (75%), Gaps = 11/98 (11%)
Query: 229 QASGSTGGGGGGGNTPAQQ-----------PKQRVRARRGQATDPHSIAERLRRERIAER 277
Q+S GGG G N P PK RVRARRGQATDPHSIAERLRRE+I++R
Sbjct: 264 QSSNEASGGGTGLNAPPFMVPANGAAGNGAPKPRVRARRGQATDPHSIAERLRREKISDR 323
Query: 278 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
MK LQELVPN+N+TDKASMLDEII+YVKFLQLQVKV S
Sbjct: 324 MKNLQELVPNSNRTDKASMLDEIIEYVKFLQLQVKVRS 361
>gi|388499536|gb|AFK37834.1| unknown [Lotus japonicus]
Length = 493
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 81/133 (60%), Gaps = 11/133 (8%)
Query: 220 GPVMNQTQAQASGSTGGGGG---GGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERI 274
G V + ++A S+GG + P + PK VRARRGQATD HS+AER+RRE+I
Sbjct: 253 GSVKAEEDSKAGTSSGGDEKQNMSSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKI 312
Query: 275 AERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMS 333
+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ QV+ LSM +L D S
Sbjct: 313 SERMKLLQDLVPGCNKVTGKALMLDEIINYVRSLQRQVEFLSM-KLSSVNT----RLDFS 367
Query: 334 SEGGGGGDCIQAN 346
+E D Q+N
Sbjct: 368 TESLISKDIFQSN 380
>gi|224108619|ref|XP_002314910.1| predicted protein [Populus trichocarpa]
gi|222863950|gb|EEF01081.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 82/127 (64%), Gaps = 6/127 (4%)
Query: 226 TQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
T ++ASG G G G+ ++ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LV
Sbjct: 343 TTSKASGKQGKQGSQGSDQPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLV 402
Query: 286 PNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQ 344
P +K T KA MLDEII+YV+ LQ QV+ LSM A V P + D + EG D +Q
Sbjct: 403 PGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-DFNIEGLLAKDILQ 457
Query: 345 ANGRNPN 351
+ P+
Sbjct: 458 SRAVPPS 464
>gi|226504718|ref|NP_001150409.1| LOC100284039 [Zea mays]
gi|195639036|gb|ACG38986.1| protein SPATULA [Zea mays]
gi|414873439|tpg|DAA51996.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 255
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 68/97 (70%), Gaps = 5/97 (5%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQR----VRARRGQATDPHSIAERLRRERIAERMKA 280
+T+ + + G N PA +P ++ VRARRGQATD HS+AER RRE+I+ERMK
Sbjct: 95 RTEVETDSRSAGKAVSKNIPAAEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKV 154
Query: 281 LQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP NK KAS+LDEII+Y++ LQ QV+ LSM
Sbjct: 155 LQDLVPGCNKVIGKASVLDEIINYIQSLQCQVEFLSM 191
>gi|159505446|gb|ABW97699.1| putative bHLH transcription factor [Citrus sinensis]
Length = 370
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 16/126 (12%)
Query: 219 PGPVMNQTQAQASGSTGGGGGGGNTP--------AQQPKQ---RVRARRGQATDPHSIAE 267
P V ++ Q + + + N+P A++P + VRARRGQATD HS+AE
Sbjct: 139 PREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAE 198
Query: 268 RLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
R+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+FLQ QV+ LSM A+V
Sbjct: 199 RVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSM----KLASVN 254
Query: 327 PLVADM 332
P+ D
Sbjct: 255 PMFYDF 260
>gi|357152259|ref|XP_003576061.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 211
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 67/92 (72%), Gaps = 5/92 (5%)
Query: 230 ASGSTGGGGGGGNTP-AQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
SG GG G G A+ P + VRARRGQATD HS+AER+RRE+I+ERMK LQ+LV
Sbjct: 6 VSGELGGNGKGKEKEVAEDPHKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLV 65
Query: 286 PNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
P+ NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 66 PSCNKVTGKAVMLDEIINYVQSLQRQVEFLSM 97
>gi|224065260|ref|XP_002301743.1| predicted protein [Populus trichocarpa]
gi|222843469|gb|EEE81016.1| predicted protein [Populus trichocarpa]
Length = 225
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 75/112 (66%), Gaps = 8/112 (7%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 17 PPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 76
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNG 352
I+YV+ LQ QV+ LSM A V P + +++ E D Q+ G P+G
Sbjct: 77 INYVQSLQRQVEFLSMK----MATVNPKM-EINMETFLSKDIFQSRGSMPHG 123
>gi|356516734|ref|XP_003527048.1| PREDICTED: transcription factor bHLH79-like [Glycine max]
Length = 269
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 68/97 (70%), Gaps = 7/97 (7%)
Query: 227 QAQASGSTGGGGGGG---NTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKA 280
+A+A S+ GG N P + PKQ VRARRGQATD HS+AER RRE+I+ERMK
Sbjct: 108 KAEAEASSAGGNKSSEQSNKPCEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKI 167
Query: 281 LQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP NK KA +LDEII+Y++ LQ QV+ LSM
Sbjct: 168 LQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 204
>gi|356566230|ref|XP_003551337.1| PREDICTED: transcription factor bHLH62-like [Glycine max]
Length = 585
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 75/132 (56%), Gaps = 17/132 (12%)
Query: 227 QAQASGSTGGGGGGGN---------TPAQQPKQ--RVRARRGQATDPHSIAERLRRERIA 275
Q +A + GG N P + PK VRARRGQATD HS+AER+RRE+I+
Sbjct: 349 QVKAEEESKGGNSNANDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIS 408
Query: 276 ERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSS 334
ERMK LQ+LVP NK T KA MLDEII+YV+ LQ QV+ LSM A D S
Sbjct: 409 ERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSM-----KLASVNTRLDFSI 463
Query: 335 EGGGGGDCIQAN 346
E D Q+N
Sbjct: 464 ESLISKDIFQSN 475
>gi|449493518|ref|XP_004159328.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 517
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 230 ASGSTGGGGGGGNTPAQQPKQR---VRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
A+ TG G + P+ PK+ VRARRGQAT+ HS+AER+RRE+I+ERMK LQELVP
Sbjct: 300 ANKGTGKHGKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVP 359
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQA 345
+K T KA MLDEII+YV+ LQ QV+ LSM A V P + D++ +G D +Q+
Sbjct: 360 GCSKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-DINIDGVVAKDILQS 414
>gi|356503048|ref|XP_003520324.1| PREDICTED: transcription factor bHLH62-like [Glycine max]
Length = 582
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 69/106 (65%), Gaps = 8/106 (7%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 362 PPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEI 421
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQAN 346
I+YV+ LQ QV+ LSM A D+S E D Q+N
Sbjct: 422 INYVQSLQRQVEFLSMK-----LASVNTRMDLSIESLVTKDVFQSN 462
>gi|449434704|ref|XP_004135136.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 561
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 230 ASGSTGGGGGGGNTPAQQPKQR---VRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
A+ TG G + P+ PK+ VRARRGQAT+ HS+AER+RRE+I+ERMK LQELVP
Sbjct: 344 ANKGTGKHGKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVP 403
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQA 345
+K T KA MLDEII+YV+ LQ QV+ LSM A V P + D++ +G D +Q+
Sbjct: 404 GCSKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-DINIDGVVAKDILQS 458
>gi|116787273|gb|ABK24441.1| unknown [Picea sitchensis]
Length = 320
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 66/87 (75%), Gaps = 6/87 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 122 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKAVMLDEIINYVQALQCQ 181
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGG 337
V+ LSM AAV P + D + EGG
Sbjct: 182 VEFLSMK----LAAVNPQL-DCNVEGG 203
>gi|55419646|gb|AAV51936.1| bHLH transcription factor [Gossypium hirsutum]
Length = 222
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 68/96 (70%), Gaps = 4/96 (4%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKAL 281
+ + +AS + G + PA+ PKQ VRARRGQATD HS+AER RRERI+ERMK L
Sbjct: 63 EAEVEASSADGSKPDKNSKPAEPPKQDYIHVRARRGQATDSHSLAERARRERISERMKIL 122
Query: 282 QELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
Q+LVP NK KA +LDEII+Y++ LQ QV+ LSM
Sbjct: 123 QDLVPGCNKVIGKALVLDEIINYIQSLQQQVEFLSM 158
>gi|125557558|gb|EAZ03094.1| hypothetical protein OsI_25238 [Oryza sativa Indica Group]
gi|125599428|gb|EAZ39004.1| hypothetical protein OsJ_23423 [Oryza sativa Japonica Group]
Length = 256
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 4/90 (4%)
Query: 231 SGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPN 287
SG++ TP + PKQ VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP
Sbjct: 104 SGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 163
Query: 288 ANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
NK KAS+LDEII+Y++ LQ QV+ LSM
Sbjct: 164 CNKVIGKASVLDEIINYIQSLQHQVEFLSM 193
>gi|297738215|emb|CBI27416.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 79/119 (66%), Gaps = 6/119 (5%)
Query: 228 AQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPN 287
++ +G G G + P ++ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP
Sbjct: 278 SKNTGKHGKQGAQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPG 337
Query: 288 ANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQA 345
+K T KA MLDEII+YV+ LQ QV+ LSM A V P + D + EG G D +Q+
Sbjct: 338 CSKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-DFNIEGMLGKDILQS 391
>gi|356495611|ref|XP_003516668.1| PREDICTED: transcription factor bHLH49-like [Glycine max]
Length = 414
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 77/118 (65%), Gaps = 6/118 (5%)
Query: 228 AQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPN 287
A+ASG G + P ++ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP
Sbjct: 197 AKASGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPG 256
Query: 288 ANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQ 344
+K T KA MLDEII+YV+ LQ QV+ LSM A V P + D + EG D +Q
Sbjct: 257 CSKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-DFNIEGLLAKDILQ 309
>gi|18423212|ref|NP_568745.1| transcription factor bHLH137 [Arabidopsis thaliana]
gi|30695963|ref|NP_851163.1| transcription factor bHLH137 [Arabidopsis thaliana]
gi|75305763|sp|Q93W88.1|BH137_ARATH RecName: Full=Transcription factor bHLH137; AltName: Full=Basic
helix-loop-helix protein 137; Short=AtbHLH137;
Short=bHLH 137; AltName: Full=Transcription factor EN
89; AltName: Full=bHLH transcription factor bHLH137
gi|16226850|gb|AAL16280.1|AF428350_1 unknown protein [Arabidopsis thaliana]
gi|15982883|gb|AAL09788.1| probable DNA-binding protein [Arabidopsis thaliana]
gi|21360503|gb|AAM47367.1| At5g50917/At5g50917 [Arabidopsis thaliana]
gi|21593195|gb|AAM65144.1| unknown [Arabidopsis thaliana]
gi|332008626|gb|AED96009.1| transcription factor bHLH137 [Arabidopsis thaliana]
gi|332008627|gb|AED96010.1| transcription factor bHLH137 [Arabidopsis thaliana]
Length = 286
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 65/88 (73%), Gaps = 5/88 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERM+ LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQ 195
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGG 338
V+ LSM +++P+V D S+ G
Sbjct: 196 VEFLSMK----LTSISPVVYDFGSDLDG 219
>gi|148906813|gb|ABR16552.1| unknown [Picea sitchensis]
Length = 605
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 72/100 (72%), Gaps = 6/100 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 404 VRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 463
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNP 350
V+ LSM A V P + D + +G D +Q++G +P
Sbjct: 464 VEFLSMK----LATVNPRL-DFNMDGLIAKDMLQSHGSSP 498
>gi|357516845|ref|XP_003628711.1| BHLH transcription factor [Medicago truncatula]
gi|355522733|gb|AET03187.1| BHLH transcription factor [Medicago truncatula]
Length = 467
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 228 AQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPN 287
A+ASG G + P + VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP
Sbjct: 281 AKASGKNAKQGSQASDPPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPG 340
Query: 288 ANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 341 CNKVTGKAVMLDEIINYVQSLQQQVEFLSM 370
>gi|242032639|ref|XP_002463714.1| hypothetical protein SORBIDRAFT_01g004710 [Sorghum bicolor]
gi|241917568|gb|EER90712.1| hypothetical protein SORBIDRAFT_01g004710 [Sorghum bicolor]
Length = 253
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%), Gaps = 5/97 (5%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQR----VRARRGQATDPHSIAERLRRERIAERMKA 280
+T+A+ + G + PA +P ++ VRARRGQATD HS+AER RRE+I+ERMK
Sbjct: 93 RTEAETDPRSAGKAVSKSLPAAEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKV 152
Query: 281 LQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP NK KAS+LDEII+Y++ LQ QV+ LSM
Sbjct: 153 LQDLVPGCNKVIGKASVLDEIINYIQSLQCQVEFLSM 189
>gi|356558973|ref|XP_003547776.1| PREDICTED: transcription factor bHLH62-like [Glycine max]
Length = 548
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 69/106 (65%), Gaps = 8/106 (7%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 329 PPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEI 388
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQAN 346
I+YV+ LQ QV+ LSM A D+S E D Q+N
Sbjct: 389 INYVQSLQRQVEFLSMK-----LASVNTRMDLSIENLISKDVFQSN 429
>gi|356527316|ref|XP_003532257.1| PREDICTED: transcription factor bHLH62-like [Glycine max]
Length = 586
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 68/106 (64%), Gaps = 8/106 (7%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 376 PPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEI 435
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQAN 346
I+YV+ LQ QV+ LSM A D S E D Q+N
Sbjct: 436 INYVQSLQRQVEFLSM-----KLASVNTRLDFSIESLISKDIFQSN 476
>gi|298205236|emb|CBI17295.3| unnamed protein product [Vitis vinifera]
Length = 457
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 77/129 (59%), Gaps = 15/129 (11%)
Query: 232 GSTGGGGGGGNT-------PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
GST G G P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ
Sbjct: 234 GSTKSAGDGNQKQSKDNPKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQ 293
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGD 341
+LVP NK T KA MLDEII+YV+ LQ QV+ LSM A V P + D + E +
Sbjct: 294 DLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRM-DFNMEALLSKE 348
Query: 342 CIQANGRNP 350
Q+ G P
Sbjct: 349 IFQSRGSLP 357
>gi|357119169|ref|XP_003561318.1| PREDICTED: transcription factor bHLH79-like [Brachypodium
distachyon]
Length = 240
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 68/101 (67%), Gaps = 4/101 (3%)
Query: 243 TPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLD 298
TP + PKQ VRARRGQATD HSIAER RRE+I+ERMK LQ+LVP NK KAS+LD
Sbjct: 100 TPPEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKMLQDLVPGCNKVIGKASVLD 159
Query: 299 EIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGG 339
EII+Y++ LQ QV+ LSM A V +A S+ G
Sbjct: 160 EIINYIQALQRQVEFLSMKLEAVNAHVNNRIASFQSKDVGA 200
>gi|147786897|emb|CAN73299.1| hypothetical protein VITISV_005183 [Vitis vinifera]
Length = 569
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 77/129 (59%), Gaps = 15/129 (11%)
Query: 232 GSTGGGGGGGNT-------PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
GST G G P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ
Sbjct: 343 GSTKSAGDGNQKQSKDNPKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQ 402
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGD 341
+LVP NK T KA MLDEII+YV+ LQ QV+ LSM A V P + D + E +
Sbjct: 403 DLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRM-DFNMEALLSKE 457
Query: 342 CIQANGRNP 350
Q+ G P
Sbjct: 458 IFQSRGSLP 466
>gi|359477937|ref|XP_002264969.2| PREDICTED: transcription factor bHLH62-like [Vitis vinifera]
Length = 569
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 77/129 (59%), Gaps = 15/129 (11%)
Query: 232 GSTGGGGGGGNT-------PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
GST G G P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ
Sbjct: 343 GSTKSAGDGNQKQSKDNPKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQ 402
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGD 341
+LVP NK T KA MLDEII+YV+ LQ QV+ LSM A V P + D + E +
Sbjct: 403 DLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRM-DFNMEALLSKE 457
Query: 342 CIQANGRNP 350
Q+ G P
Sbjct: 458 IFQSRGSLP 466
>gi|255587658|ref|XP_002534345.1| transcription factor, putative [Ricinus communis]
gi|223525454|gb|EEF28039.1| transcription factor, putative [Ricinus communis]
Length = 554
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 60/76 (78%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 340 PPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEI 399
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 400 INYVQSLQRQVEFLSM 415
>gi|357148526|ref|XP_003574799.1| PREDICTED: transcription factor bHLH62-like [Brachypodium
distachyon]
Length = 401
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 65/95 (68%), Gaps = 7/95 (7%)
Query: 237 GGGGGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DK 293
G G P + PK VRARRGQATD HS+AER+RRERI++RMK LQ+LVP NK K
Sbjct: 173 GKGKNAKPVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKFLQDLVPGCNKVIGK 232
Query: 294 ASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
A MLDEII+YV+ LQ QV+ LSM A V PL
Sbjct: 233 ALMLDEIINYVQSLQRQVEFLSMK----LATVNPL 263
>gi|293333026|ref|NP_001168271.1| putative HLH DNA-binding domain superfamily protein isoform 1 [Zea
mays]
gi|194707870|gb|ACF88019.1| unknown [Zea mays]
gi|223947139|gb|ACN27653.1| unknown [Zea mays]
gi|414879034|tpg|DAA56165.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 1
[Zea mays]
gi|414879035|tpg|DAA56166.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 2
[Zea mays]
Length = 460
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 69/98 (70%), Gaps = 6/98 (6%)
Query: 225 QTQAQASGSTGG---GGGGGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMK 279
+ AQ++ GG G G + P + PK VRARRG+ATD HS+AER+RRE+I++RMK
Sbjct: 220 KAAAQSNSDNGGKKQGKDGASKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMK 279
Query: 280 ALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 280 LLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 317
>gi|302763871|ref|XP_002965357.1| hypothetical protein SELMODRAFT_439190 [Selaginella moellendorffii]
gi|300167590|gb|EFJ34195.1| hypothetical protein SELMODRAFT_439190 [Selaginella moellendorffii]
Length = 730
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%), Gaps = 7/87 (8%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 363 PPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 422
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAP 327
I+YV+ LQ QV+ LSM AAV P
Sbjct: 423 INYVQSLQRQVEFLSMK----LAAVNP 445
>gi|224069890|ref|XP_002303073.1| predicted protein [Populus trichocarpa]
gi|222844799|gb|EEE82346.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 60/76 (78%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 348 PPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEI 407
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 408 INYVQSLQRQVEFLSM 423
>gi|356507384|ref|XP_003522447.1| PREDICTED: transcription factor bHLH137-like [Glycine max]
Length = 334
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 65/85 (76%), Gaps = 5/85 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 147 VRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQ 206
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSE 335
V+ LSM A+V P+ D++++
Sbjct: 207 VEFLSMK----LASVNPMFYDLATD 227
>gi|102139897|gb|ABF70046.1| basic helix-loop-helix (bHLH) family protein [Musa acuminata]
Length = 278
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 65/98 (66%), Gaps = 9/98 (9%)
Query: 228 AQASGSTGGGG--------GGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMK 279
A+ G+ GG G + P + VRARRGQATD HS+AER+RRERI+ERMK
Sbjct: 100 AEEEGTARGGATSKNKKKASGSDAPKETDYIHVRARRGQATDSHSLAERVRRERISERMK 159
Query: 280 ALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
LQELVP +K KAS LDEII+YV+ LQ QV+ LSM
Sbjct: 160 YLQELVPGCSKIMGKASTLDEIINYVQSLQRQVEFLSM 197
>gi|115448177|ref|NP_001047868.1| Os02g0705500 [Oryza sativa Japonica Group]
gi|41053096|dbj|BAD08039.1| putative bHLH transcription factor [Oryza sativa Japonica Group]
gi|113537399|dbj|BAF09782.1| Os02g0705500 [Oryza sativa Japonica Group]
gi|215767339|dbj|BAG99567.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 361
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 164 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQ 223
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 224 VEFLSM 229
>gi|295913657|gb|ADG58071.1| transcription factor [Lycoris longituba]
Length = 258
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 5/98 (5%)
Query: 224 NQTQAQAS-GSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMK 279
++T+A+AS G N P++ PKQ VRARRGQATD HS+AER RRE+I+ERM
Sbjct: 99 SKTEAEASSGLCNKLADQSNQPSEAPKQDYIHVRARRGQATDSHSLAERARREKISERMN 158
Query: 280 ALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP NK KAS+LDEII+Y++ LQ QV+ LSM
Sbjct: 159 ILQDLVPGCNKVIGKASVLDEIINYIQALQRQVEFLSM 196
>gi|218191430|gb|EEC73857.1| hypothetical protein OsI_08622 [Oryza sativa Indica Group]
Length = 361
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 164 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQ 223
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 224 VEFLSM 229
>gi|226530189|ref|NP_001145523.1| uncharacterized protein LOC100278938 [Zea mays]
gi|195657423|gb|ACG48179.1| hypothetical protein [Zea mays]
Length = 460
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 68/95 (71%), Gaps = 6/95 (6%)
Query: 228 AQASGSTGG---GGGGGNTPAQQPKQRV--RARRGQATDPHSIAERLRRERIAERMKALQ 282
AQ++ GG G G + P + PK + RARRG+ATD HS+AER+RRE+I++RMK LQ
Sbjct: 223 AQSNSDNGGKKQGKDGASKPPEPPKDYIHFRARRGEATDSHSLAERVRREKISQRMKLLQ 282
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 283 DLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 317
>gi|356516503|ref|XP_003526933.1| PREDICTED: transcription factor bHLH77-like [Glycine max]
Length = 320
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 65/85 (76%), Gaps = 5/85 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 164 VRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQ 223
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSE 335
V+ LSM A+V P+ D++++
Sbjct: 224 VEFLSM----KLASVNPMFYDLATD 244
>gi|326501104|dbj|BAJ98783.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 384
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 232 GSTGGGGGGGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN 289
G G G P + PK VRARRGQATD HS+AER+RRERI++RMK LQ+LVP N
Sbjct: 163 GEQRKGKGKNAKPVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKFLQDLVPGCN 222
Query: 290 KT-DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
K KA MLDEII+YV+ LQ QV+ LSM A V PL
Sbjct: 223 KVIGKALMLDEIINYVQSLQRQVEFLSMK----LATVNPL 258
>gi|308080388|ref|NP_001183599.1| uncharacterized protein LOC100502193 [Zea mays]
gi|238013326|gb|ACR37698.1| unknown [Zea mays]
gi|413951548|gb|AFW84197.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 480
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 68/105 (64%), Gaps = 9/105 (8%)
Query: 221 PVMNQTQAQASGSTGGG------GGGGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRE 272
P AQ+S GGG PA+ PK VRARRG+ATD HS+AER+RRE
Sbjct: 241 PTTKGKAAQSSSENGGGRKQQGKESATKPPAEAPKDYIHVRARRGEATDSHSLAERVRRE 300
Query: 273 RIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
+I++RMK LQ+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 301 KISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 345
>gi|255547017|ref|XP_002514566.1| conserved hypothetical protein [Ricinus communis]
gi|223546170|gb|EEF47672.1| conserved hypothetical protein [Ricinus communis]
Length = 566
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 77/121 (63%), Gaps = 6/121 (4%)
Query: 226 TQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
T + SG G G + P ++ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LV
Sbjct: 345 TPNKTSGKQGKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLV 404
Query: 286 PNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQ 344
P +K T KA MLDEII+YV+ LQ QV+ LSM A V P + D + EG D +
Sbjct: 405 PGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-DFNIEGLLAKDILH 459
Query: 345 A 345
+
Sbjct: 460 S 460
>gi|302774124|ref|XP_002970479.1| hypothetical protein SELMODRAFT_93546 [Selaginella moellendorffii]
gi|302793582|ref|XP_002978556.1| hypothetical protein SELMODRAFT_108937 [Selaginella moellendorffii]
gi|300153905|gb|EFJ20542.1| hypothetical protein SELMODRAFT_108937 [Selaginella moellendorffii]
gi|300161995|gb|EFJ28609.1| hypothetical protein SELMODRAFT_93546 [Selaginella moellendorffii]
Length = 125
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 66/97 (68%), Gaps = 8/97 (8%)
Query: 232 GSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK- 290
G G GNT Q VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K
Sbjct: 16 GKENSKPGAGNT---QDYIHVRARRGQATDSHSLAERVRREKISERMKTLQDLVPGCSKV 72
Query: 291 TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 327
T KA MLDEII+YV+ LQ QV+ LSM AAV P
Sbjct: 73 TGKAMMLDEIINYVQSLQRQVEFLSMK----LAAVKP 105
>gi|224105381|ref|XP_002313791.1| predicted protein [Populus trichocarpa]
gi|222850199|gb|EEE87746.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%), Gaps = 6/87 (6%)
Query: 243 TPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
T Q+P VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 227 TEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEI 286
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAP 327
I+YV+ LQ QV+ LSM AAV P
Sbjct: 287 INYVQSLQRQVEFLSMK----LAAVNP 309
>gi|224128880|ref|XP_002320444.1| hypothetical protein POPTRDRAFT_572918 [Populus trichocarpa]
gi|222861217|gb|EEE98759.1| hypothetical protein POPTRDRAFT_572918 [Populus trichocarpa]
Length = 568
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 60/76 (78%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 359 PPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 418
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 419 INYVQSLQRQVEFLSM 434
>gi|297734057|emb|CBI15304.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 68/97 (70%), Gaps = 4/97 (4%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKA 280
++ + +AS G + PA+Q KQ VRARRGQATD HS+AER RRE+I+ERMK
Sbjct: 111 SKAELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAERARREKISERMKI 170
Query: 281 LQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP NK KA +LDEII+Y++ LQ QV+ LSM
Sbjct: 171 LQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 207
>gi|15239013|ref|NP_199667.1| transcription factor bHLH78 [Arabidopsis thaliana]
gi|75309142|sp|Q9FJL4.1|BH078_ARATH RecName: Full=Transcription factor bHLH78; AltName: Full=Basic
helix-loop-helix protein 78; Short=AtbHLH78; Short=bHLH
78; AltName: Full=Transcription factor EN 86; AltName:
Full=bHLH transcription factor bHLH078
gi|10177346|dbj|BAB10689.1| unnamed protein product [Arabidopsis thaliana]
gi|27754625|gb|AAO22758.1| unknown protein [Arabidopsis thaliana]
gi|28973465|gb|AAO64057.1| unknown protein [Arabidopsis thaliana]
gi|332008305|gb|AED95688.1| transcription factor bHLH78 [Arabidopsis thaliana]
Length = 498
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 59/76 (77%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I ERMK LQ+LVP NK T KA MLDEI
Sbjct: 291 PPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEI 350
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 351 INYVQSLQRQVEFLSM 366
>gi|449527227|ref|XP_004170614.1| PREDICTED: transcription factor bHLH62-like [Cucumis sativus]
Length = 450
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 60/76 (78%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 244 PPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEI 303
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 304 INYVQSLQHQVEFLSM 319
>gi|356517054|ref|XP_003527205.1| PREDICTED: transcription factor bHLH63-like [Glycine max]
Length = 384
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 73/109 (66%), Gaps = 8/109 (7%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 185 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQ 244
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRN-PN-GAQTTS 357
V+ LSM AAV P + D+S + D N PN G +TS
Sbjct: 245 VEFLSMK----LAAVNPRL-DLSIDDLFDKDVFSTCATNFPNIGISSTS 288
>gi|255543699|ref|XP_002512912.1| conserved hypothetical protein [Ricinus communis]
gi|223547923|gb|EEF49415.1| conserved hypothetical protein [Ricinus communis]
Length = 444
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%), Gaps = 6/87 (6%)
Query: 243 TPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
T Q+P VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 224 TEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEI 283
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAP 327
I+YV+ LQ QV+ LSM AAV P
Sbjct: 284 INYVQSLQRQVEFLSMK----LAAVNP 306
>gi|224136304|ref|XP_002322296.1| predicted protein [Populus trichocarpa]
gi|222869292|gb|EEF06423.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 62/82 (75%), Gaps = 5/82 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERMK LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 174 VRARRGQATDSHSLAERVRRERISERMKILQLLVPGCDKITGKALMLDEIINYVQSLQNQ 233
Query: 311 VKVLSMSRLGGAAAVAPLVADM 332
V+ LSM A+V PL+ D
Sbjct: 234 VEFLSMK----LASVNPLLYDF 251
>gi|219362473|ref|NP_001136461.1| uncharacterized protein LOC100216572 [Zea mays]
gi|194695798|gb|ACF81983.1| unknown [Zea mays]
Length = 366
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 76/126 (60%), Gaps = 17/126 (13%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 146 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIINYVQSLQKQ 205
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGG----------GGGDCIQANGRNPNGAQTTSAND 360
V+ LSM AA P+V+ S G GGGD + GR S ND
Sbjct: 206 VEFLSMK----IAASNPVVSFASLSGAMSFDDIWREIGGGDGEREPGRAD--VYIVSWND 259
Query: 361 SLTVTE 366
V +
Sbjct: 260 HFFVLK 265
>gi|225456604|ref|XP_002267633.1| PREDICTED: transcription factor bHLH79 isoform 1 [Vitis vinifera]
Length = 284
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 68/97 (70%), Gaps = 4/97 (4%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKA 280
++ + +AS G + PA+Q KQ VRARRGQATD HS+AER RRE+I+ERMK
Sbjct: 126 SKAELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAERARREKISERMKI 185
Query: 281 LQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP NK KA +LDEII+Y++ LQ QV+ LSM
Sbjct: 186 LQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 222
>gi|297795891|ref|XP_002865830.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297311665|gb|EFH42089.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 281
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 65/88 (73%), Gaps = 5/88 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERM+ LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 137 VRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQNQ 196
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGG 338
V+ LSM +++P+V D S+ G
Sbjct: 197 VEFLSMK----LTSISPVVYDFGSDLDG 220
>gi|115479977|ref|NP_001063582.1| Os09g0501600 [Oryza sativa Japonica Group]
gi|113631815|dbj|BAF25496.1| Os09g0501600 [Oryza sativa Japonica Group]
gi|125606227|gb|EAZ45263.1| hypothetical protein OsJ_29905 [Oryza sativa Japonica Group]
gi|215765178|dbj|BAG86875.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 366
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 69/100 (69%), Gaps = 10/100 (10%)
Query: 227 QAQASGSTG------GGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAER 277
+A + GS G G G + PA +P + VRARRGQATD HS+AER+RRE+I++R
Sbjct: 140 EAASDGSVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREKISQR 199
Query: 278 MKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
MK LQ+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 200 MKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSM 239
>gi|125564259|gb|EAZ09639.1| hypothetical protein OsI_31923 [Oryza sativa Indica Group]
Length = 366
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 69/100 (69%), Gaps = 10/100 (10%)
Query: 227 QAQASGSTG------GGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAER 277
+A + GS G G G + PA +P + VRARRGQATD HS+AER+RRE+I++R
Sbjct: 140 EAASDGSVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREKISQR 199
Query: 278 MKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
MK LQ+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 200 MKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSM 239
>gi|295913599|gb|ADG58045.1| transcription factor [Lycoris longituba]
Length = 229
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 69/97 (71%), Gaps = 6/97 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 76 VRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 135
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
V+ LSM AAV P + D + EG D +Q G
Sbjct: 136 VEFLSMK----LAAVNPTL-DFNIEGLLSKDLLQLRG 167
>gi|226498378|ref|NP_001148110.1| BHLH transcription factor [Zea mays]
gi|195615854|gb|ACG29757.1| BHLH transcription factor [Zea mays]
Length = 403
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 75/126 (59%), Gaps = 18/126 (14%)
Query: 217 GAPGPVMNQTQAQASGSTGGGGGGGN-----------TPAQQPKQ--RVRARRGQATDPH 263
G+P + QA + S GGG N P + P+ VRARRGQATD H
Sbjct: 146 GSPVKLPKPEQAGSDSSVEDGGGAQNQKPPPGKGKNAKPVEPPRDYVHVRARRGQATDSH 205
Query: 264 SIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 322
S+AER+RRERI++RMK LQ+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 206 SLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEFLSMK----L 261
Query: 323 AAVAPL 328
A V PL
Sbjct: 262 ATVNPL 267
>gi|297792043|ref|XP_002863906.1| hypothetical protein ARALYDRAFT_494918 [Arabidopsis lyrata subsp.
lyrata]
gi|297309741|gb|EFH40165.1| hypothetical protein ARALYDRAFT_494918 [Arabidopsis lyrata subsp.
lyrata]
Length = 498
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 59/76 (77%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I ERMK LQ+LVP NK T KA MLDEI
Sbjct: 289 PPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEI 348
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 349 INYVQSLQRQVEFLSM 364
>gi|357513299|ref|XP_003626938.1| BHLH transcription factor [Medicago truncatula]
gi|355520960|gb|AET01414.1| BHLH transcription factor [Medicago truncatula]
Length = 498
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 291 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 350
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 351 VEFLSM 356
>gi|20127085|gb|AAM10957.1|AF488610_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 498
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 59/76 (77%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I ERMK LQ+LVP NK T KA MLDEI
Sbjct: 291 PPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEI 350
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 351 INYVQSLQRQVEFLSM 366
>gi|5923912|gb|AAD56411.1|AF185269_1 bHLH transcription factor GBOF-1 [Tulipa gesneriana]
Length = 321
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 71/104 (68%), Gaps = 5/104 (4%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 135 VRARRGQATDSHSLAERVRREKISERMKLLQALVPGCDKVTGKAVMLDEIINYVQSLQNQ 194
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQ 354
V+ LSM A V+P++ + + G + ++ G P +Q
Sbjct: 195 VEFLSMK----LATVSPMLYEFGLDIEGQMNDLERVGSFPQDSQ 234
>gi|356502674|ref|XP_003520142.1| PREDICTED: transcription factor bHLH49-like [Glycine max]
Length = 551
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 6/120 (5%)
Query: 226 TQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
T +A G G + P ++ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LV
Sbjct: 332 TANKACGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLV 391
Query: 286 PNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQ 344
P +K T KA MLDEII+YV+ LQ QV+ LSM A V P + D + EG D +Q
Sbjct: 392 PGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-DFNIEGLLAKDILQ 446
>gi|449509268|ref|XP_004163540.1| PREDICTED: transcription factor bHLH74-like [Cucumis sativus]
Length = 402
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 61/76 (80%), Gaps = 4/76 (5%)
Query: 245 AQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
A+ PK+ VRARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEI
Sbjct: 222 AEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEI 281
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 282 INYVQSLQQQVEFLSM 297
>gi|449459842|ref|XP_004147655.1| PREDICTED: transcription factor bHLH78-like [Cucumis sativus]
gi|449525371|ref|XP_004169691.1| PREDICTED: transcription factor bHLH78-like [Cucumis sativus]
Length = 546
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 60/76 (78%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK T KA MLDEI
Sbjct: 343 PPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEI 402
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 403 INYVQSLQRQVEFLSM 418
>gi|413938470|gb|AFW73021.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 340
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 146 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIINYVQSLQKQ 205
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 206 VEFLSM 211
>gi|449466372|ref|XP_004150900.1| PREDICTED: transcription factor bHLH62-like [Cucumis sativus]
Length = 412
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 60/76 (78%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 206 PPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEI 265
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 266 INYVQSLQHQVEFLSM 281
>gi|242050734|ref|XP_002463111.1| hypothetical protein SORBIDRAFT_02g037990 [Sorghum bicolor]
gi|241926488|gb|EER99632.1| hypothetical protein SORBIDRAFT_02g037990 [Sorghum bicolor]
Length = 282
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%)
Query: 226 TQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
TQ+ +S ++ G GNT + K RA RG ATDP S+ R RRERI ER++ LQ+LV
Sbjct: 164 TQSSSSCTSEDGNFEGNTNSSTKKAYTRASRGAATDPQSLYARKRRERINERLRILQKLV 223
Query: 286 PNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
PN K D ++ML+E YVKFLQLQ+K+LS A +A
Sbjct: 224 PNGTKVDISTMLEEAAQYVKFLQLQIKLLSSDDTWMYAPIA 264
>gi|115441817|ref|NP_001045188.1| Os01g0915600 [Oryza sativa Japonica Group]
gi|56784941|dbj|BAD82399.1| putative bHLH transcription factor [Oryza sativa Japonica Group]
gi|113534719|dbj|BAF07102.1| Os01g0915600 [Oryza sativa Japonica Group]
gi|215704868|dbj|BAG94896.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189599|gb|EEC72026.1| hypothetical protein OsI_04910 [Oryza sativa Indica Group]
gi|323388943|gb|ADX60276.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 481
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 68/96 (70%), Gaps = 7/96 (7%)
Query: 228 AQASGSTGGGGGGG----NTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKAL 281
AQ++ GGG G + P + PK VRARRG+ATD HS+AER+RRE+I++RMK L
Sbjct: 247 AQSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLL 306
Query: 282 QELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
Q+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 307 QDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 342
>gi|356538777|ref|XP_003537877.1| PREDICTED: transcription factor bHLH49-like [Glycine max]
Length = 420
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 70/106 (66%), Gaps = 6/106 (5%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
N + ++ ++ G Q+P+ VRARRGQATD HS+AER+RRE+I+ERMK LQ
Sbjct: 182 NNRETTSAETSKDNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQ 241
Query: 283 ELVPNANKTD-KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 327
+LVP NK KA MLDEII+YV+ LQ QV+ LSM AAV P
Sbjct: 242 DLVPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMK----LAAVNP 283
>gi|357137204|ref|XP_003570191.1| PREDICTED: uncharacterized protein LOC100822236 [Brachypodium
distachyon]
Length = 361
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 161 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCDKVTGKAGMLDEIINYVQSLQKQ 220
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 221 VEFLSM 226
>gi|218201482|gb|EEC83909.1| hypothetical protein OsI_29959 [Oryza sativa Indica Group]
Length = 405
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 63/88 (71%), Gaps = 7/88 (7%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRERI++RMK LQ+LVP NK KA MLDEI
Sbjct: 194 PVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEI 253
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
I+YV+ LQ QV+ LSM A V PL
Sbjct: 254 INYVQSLQRQVEFLSMK----LATVNPL 277
>gi|115477387|ref|NP_001062289.1| Os08g0524800 [Oryza sativa Japonica Group]
gi|29647487|dbj|BAC75416.1| bHLH transcription factor(GBOF-1)-like [Oryza sativa Japonica
Group]
gi|113624258|dbj|BAF24203.1| Os08g0524800 [Oryza sativa Japonica Group]
Length = 405
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 63/88 (71%), Gaps = 7/88 (7%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRERI++RMK LQ+LVP NK KA MLDEI
Sbjct: 194 PVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEI 253
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
I+YV+ LQ QV+ LSM A V PL
Sbjct: 254 INYVQSLQRQVEFLSMK----LATVNPL 277
>gi|222623520|gb|EEE57652.1| hypothetical protein OsJ_08085 [Oryza sativa Japonica Group]
Length = 300
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 164 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQ 223
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 224 VEFLSM 229
>gi|255540091|ref|XP_002511110.1| DNA binding protein, putative [Ricinus communis]
gi|223550225|gb|EEF51712.1| DNA binding protein, putative [Ricinus communis]
Length = 422
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 65/95 (68%), Gaps = 8/95 (8%)
Query: 242 NTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASML 297
P Q+P VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA ML
Sbjct: 159 KVPDQEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQRLVPGCDKVTGKALML 218
Query: 298 DEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADM 332
DEII+YV+ LQ QV+ LSM A+V PL D
Sbjct: 219 DEIINYVQSLQNQVEFLSMK----LASVNPLFYDF 249
>gi|359473485|ref|XP_003631305.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like
[Vitis vinifera]
Length = 609
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 74/113 (65%), Gaps = 6/113 (5%)
Query: 231 SGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK 290
+G G G + P ++ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K
Sbjct: 386 TGKHGKQGAQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK 445
Query: 291 -TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDC 342
T KA MLDEII+YV+ LQ QV+ LSM A V P + D + EG G D
Sbjct: 446 VTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-DFNIEGMLGKDV 493
>gi|323388953|gb|ADX60281.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 405
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 63/88 (71%), Gaps = 7/88 (7%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRERI++RMK LQ+LVP NK KA MLDEI
Sbjct: 194 PVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEI 253
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
I+YV+ LQ QV+ LSM A V PL
Sbjct: 254 INYVQSLQRQVEFLSMK----LATVNPL 277
>gi|224029073|gb|ACN33612.1| unknown [Zea mays]
gi|413938471|gb|AFW73022.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 350
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 146 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIINYVQSLQKQ 205
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 206 VEFLSM 211
>gi|15221563|ref|NP_177058.1| transcription factor bHLH49 [Arabidopsis thaliana]
gi|79590003|ref|NP_849863.2| transcription factor bHLH49 [Arabidopsis thaliana]
gi|75333634|sp|Q9CAA9.1|BH049_ARATH RecName: Full=Transcription factor bHLH49; AltName: Full=Basic
helix-loop-helix protein 49; Short=AtbHLH49; Short=bHLH
49; AltName: Full=Transcription factor EN 82; AltName:
Full=bHLH transcription factor bHLH049
gi|12323211|gb|AAG51583.1|AC011665_4 putative DNA-binding protein [Arabidopsis thaliana]
gi|22135841|gb|AAM91106.1| At1g68920/T6L1_10 [Arabidopsis thaliana]
gi|25090290|gb|AAN72270.1| At1g68920/T6L1_10 [Arabidopsis thaliana]
gi|332196740|gb|AEE34861.1| transcription factor bHLH49 [Arabidopsis thaliana]
gi|332196741|gb|AEE34862.1| transcription factor bHLH49 [Arabidopsis thaliana]
Length = 486
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 6/94 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 303 VRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQ 362
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQ 344
V+ LSM A V P + D + EG D +Q
Sbjct: 363 VEFLSMK----LATVNPQM-DFNLEGLLAKDALQ 391
>gi|20127044|gb|AAM10942.1|AF488584_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 486
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 6/94 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 303 VRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQ 362
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQ 344
V+ LSM A V P + D + EG D +Q
Sbjct: 363 VEFLSMK----LATVNPQM-DFNLEGLLAKDALQ 391
>gi|168056950|ref|XP_001780480.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668066|gb|EDQ54681.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 221
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 68/102 (66%), Gaps = 12/102 (11%)
Query: 227 QAQASGSTGGG--------GGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIA 275
QA AS ++G G P PKQ VRARRGQATD HS+AER+RRE+I+
Sbjct: 28 QASASENSGDSISPRSTLKGATSKRPQDFPKQDYIHVRARRGQATDSHSLAERVRREKIS 87
Query: 276 ERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
ERMK LQ+LVP +K T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 88 ERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 129
>gi|46367684|emb|CAE00874.1| TA1 protein [Oryza sativa Japonica Group]
Length = 204
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 68/96 (70%), Gaps = 7/96 (7%)
Query: 228 AQASGSTGGGGGGG----NTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKAL 281
AQ++ GGG G + P + PK VRARRG+ATD HS+AER+RRE+I++RMK L
Sbjct: 44 AQSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLL 103
Query: 282 QELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
Q+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 104 QDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 139
>gi|79320926|ref|NP_001031255.1| transcription factor bHLH49 [Arabidopsis thaliana]
gi|227204401|dbj|BAH57052.1| AT1G68920 [Arabidopsis thaliana]
gi|332196742|gb|AEE34863.1| transcription factor bHLH49 [Arabidopsis thaliana]
Length = 485
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 6/94 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 302 VRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQ 361
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQ 344
V+ LSM A V P + D + EG D +Q
Sbjct: 362 VEFLSMK----LATVNPQM-DFNLEGLLAKDALQ 390
>gi|297602519|ref|NP_001052532.2| Os04g0350700 [Oryza sativa Japonica Group]
gi|57834129|emb|CAE05521.2| OSJNBa0038P21.14 [Oryza sativa Japonica Group]
gi|215766234|dbj|BAG98462.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255675358|dbj|BAF14446.2| Os04g0350700 [Oryza sativa Japonica Group]
Length = 263
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERMK LQ LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 81 VRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQ 140
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 141 VEFLSM 146
>gi|255550670|ref|XP_002516384.1| transcription factor, putative [Ricinus communis]
gi|223544482|gb|EEF46001.1| transcription factor, putative [Ricinus communis]
Length = 534
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 346 VRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQ 405
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 406 VEFLSM 411
>gi|51971323|dbj|BAD44326.1| putative bHLH transcription factor (bHLH062) [Arabidopsis thaliana]
gi|51971523|dbj|BAD44426.1| putative bHLH transcription factor (bHLH062) [Arabidopsis thaliana]
Length = 456
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 258 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 317
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 318 VEFLSM 323
>gi|297838663|ref|XP_002887213.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333054|gb|EFH63472.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 487
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 6/94 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 303 VRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQ 362
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQ 344
V+ LSM A V P + D + EG D +Q
Sbjct: 363 VEFLSMK----LATVNPQM-DFNLEGLLAKDALQ 391
>gi|20127064|gb|AAM10951.1|AF488595_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 450
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 252 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 311
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 312 VEFLSM 317
>gi|15231450|ref|NP_187390.1| transcription factor bHLH62 [Arabidopsis thaliana]
gi|75313804|sp|Q9SRT2.1|BH062_ARATH RecName: Full=Transcription factor bHLH62; AltName: Full=Basic
helix-loop-helix protein 62; Short=AtbHLH62; Short=bHLH
62; AltName: Full=Transcription factor EN 85; AltName:
Full=bHLH transcription factor bHLH062
gi|6041855|gb|AAF02164.1|AC009853_24 unknown protein [Arabidopsis thaliana]
gi|51968880|dbj|BAD43132.1| putative bHLH transcription factor (bHLH062) [Arabidopsis thaliana]
gi|51969134|dbj|BAD43259.1| putative bHLH transcription factor (bHLH062) [Arabidopsis thaliana]
gi|111074462|gb|ABH04604.1| At3g07340 [Arabidopsis thaliana]
gi|332641009|gb|AEE74530.1| transcription factor bHLH62 [Arabidopsis thaliana]
Length = 456
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 258 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 317
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 318 VEFLSM 323
>gi|226495537|ref|NP_001141393.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
gi|194704318|gb|ACF86243.1| unknown [Zea mays]
gi|413923610|gb|AFW63542.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 342
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 62/80 (77%), Gaps = 5/80 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 143 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIINYVQSLQKQ 202
Query: 311 VKVLSMSRLGGAAAVAPLVA 330
V+ LSM AA P+V+
Sbjct: 203 VEFLSMK----IAASNPVVS 218
>gi|326523695|dbj|BAJ93018.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 417
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I ERMK LQ LVP+ NK T KA MLDEII+YV+ LQ Q
Sbjct: 258 VRARRGQATDSHSLAERVRREKIGERMKLLQSLVPSCNKITGKALMLDEIINYVQSLQRQ 317
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 318 VEFLSM 323
>gi|222628662|gb|EEE60794.1| hypothetical protein OsJ_14380 [Oryza sativa Japonica Group]
Length = 293
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERMK LQ LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 111 VRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQ 170
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 171 VEFLSM 176
>gi|225428454|ref|XP_002284113.1| PREDICTED: transcription factor bHLH63-like [Vitis vinifera]
Length = 456
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 256 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQ 315
Query: 311 VKVLSMSRLGGAAAVAP 327
V+ LSM AAV P
Sbjct: 316 VEFLSMK----LAAVNP 328
>gi|449450552|ref|XP_004143026.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
gi|449522833|ref|XP_004168430.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 329
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 64/104 (61%)
Query: 223 MNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQ 282
N Q + S GGG G T ++ RA RG ATDP S+ R RRERI ER++ LQ
Sbjct: 208 YNSDQEENSSEEANGGGSGATSDGGVNRKSRASRGSATDPQSLYARKRRERINERLRILQ 267
Query: 283 ELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
+LVPN K D ++ML+E + YVKFLQLQ+K+LS + A +A
Sbjct: 268 KLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLA 311
>gi|388504626|gb|AFK40379.1| unknown [Medicago truncatula]
Length = 397
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 191 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQ 250
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 251 VEFLSM 256
>gi|297833524|ref|XP_002884644.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330484|gb|EFH60903.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 456
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 258 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 317
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 318 VEFLSM 323
>gi|357467301|ref|XP_003603935.1| Transcription factor BEE [Medicago truncatula]
gi|355492983|gb|AES74186.1| Transcription factor BEE [Medicago truncatula]
Length = 398
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 191 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQ 250
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 251 VEFLSM 256
>gi|222619751|gb|EEE55883.1| hypothetical protein OsJ_04533 [Oryza sativa Japonica Group]
Length = 483
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 68/96 (70%), Gaps = 7/96 (7%)
Query: 228 AQASGSTGGGGGGG----NTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKAL 281
AQ++ GGG G + P + PK VRARRG+ATD HS+AER+RRE+I++RMK L
Sbjct: 249 AQSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLL 308
Query: 282 QELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
Q+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 309 QDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 344
>gi|326506812|dbj|BAJ91447.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510963|dbj|BAJ91829.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 353
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%), Gaps = 5/79 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 150 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCDKVTGKAGMLDEIINYVQSLQKQ 209
Query: 311 VKVLSMSRLGGAAAVAPLV 329
V+ LSM AA P+V
Sbjct: 210 VEFLSMK----IAAANPVV 224
>gi|413923611|gb|AFW63543.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 352
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 62/80 (77%), Gaps = 5/80 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 143 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIINYVQSLQKQ 202
Query: 311 VKVLSMSRLGGAAAVAPLVA 330
V+ LSM AA P+V+
Sbjct: 203 VEFLSMK----IAASNPVVS 218
>gi|158147058|gb|ABW22630.1| bHLH transcription factor Upa20 [Capsicum annuum]
gi|158147060|gb|ABW22631.1| bHLH transcription factor Upa20 [Capsicum annuum]
gi|158147061|gb|ABW22632.1| bHLH transcription factor Upa20 [Capsicum annuum]
Length = 340
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 61/82 (74%), Gaps = 5/82 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 164 VRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIINYVQSLQNQ 223
Query: 311 VKVLSMSRLGGAAAVAPLVADM 332
V+ LSM A++ P+ D
Sbjct: 224 VEFLSMK----LASLNPMYYDF 241
>gi|356577684|ref|XP_003556954.1| PREDICTED: transcription factor bHLH74-like [Glycine max]
Length = 435
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 60/75 (80%), Gaps = 4/75 (5%)
Query: 246 QQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEII 301
+ PK+ VRARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEII
Sbjct: 260 EAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEII 319
Query: 302 DYVKFLQLQVKVLSM 316
+YV+ LQ QV+ LSM
Sbjct: 320 NYVQSLQQQVEFLSM 334
>gi|168059612|ref|XP_001781795.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666702|gb|EDQ53349.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 656
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 245 AQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDY 303
A+Q VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+Y
Sbjct: 434 AKQDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINY 493
Query: 304 VKFLQLQVKVLSM 316
V+ LQ QV+ LSM
Sbjct: 494 VQSLQRQVENLSM 506
>gi|242059665|ref|XP_002458978.1| hypothetical protein SORBIDRAFT_03g043690 [Sorghum bicolor]
gi|241930953|gb|EES04098.1| hypothetical protein SORBIDRAFT_03g043690 [Sorghum bicolor]
Length = 484
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 68/95 (71%), Gaps = 6/95 (6%)
Query: 228 AQASGSTGGGGGGGNT---PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
AQ++ GG G ++ P + PK VRARRG+ATD HS+AER+RRE+I++RMK LQ
Sbjct: 251 AQSNSENGGKKQGKDSTSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQ 310
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 311 DLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 345
>gi|357167346|ref|XP_003581118.1| PREDICTED: transcription factor bHLH62-like [Brachypodium
distachyon]
Length = 407
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RR+RI+ERMK LQ LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 247 VRARRGQATDSHSLAERVRRKRISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQ 306
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 307 VEFLSM 312
>gi|297849334|ref|XP_002892548.1| hypothetical protein ARALYDRAFT_888270 [Arabidopsis lyrata subsp.
lyrata]
gi|297338390|gb|EFH68807.1| hypothetical protein ARALYDRAFT_888270 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 91/156 (58%), Gaps = 15/156 (9%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 204 MRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQ 263
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNP--------NGAQTTSANDSL 362
V+ LSM A V P + ++ + D +Q+ RN +G Q T N S
Sbjct: 264 VEFLSMK----LATVNPEI-NIDIDRILAKDLLQSRDRNTPTLGLNPFSGFQGTIPNLS- 317
Query: 363 TVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLAT 398
T T Q L + + S +Q L G P ++++
Sbjct: 318 TTTNPQYNPLPQTTLESELQNLYQMGFVSNPTTMSS 353
>gi|413923609|gb|AFW63541.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 316
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 62/80 (77%), Gaps = 5/80 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 143 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIINYVQSLQKQ 202
Query: 311 VKVLSMSRLGGAAAVAPLVA 330
V+ LSM AA P+V+
Sbjct: 203 VEFLSMK----IAASNPVVS 218
>gi|242062782|ref|XP_002452680.1| hypothetical protein SORBIDRAFT_04g030530 [Sorghum bicolor]
gi|241932511|gb|EES05656.1| hypothetical protein SORBIDRAFT_04g030530 [Sorghum bicolor]
Length = 359
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 62/80 (77%), Gaps = 5/80 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 153 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIINYVQSLQKQ 212
Query: 311 VKVLSMSRLGGAAAVAPLVA 330
V+ LSM AA P+V+
Sbjct: 213 VEFLSMK----IAASNPVVS 228
>gi|449461645|ref|XP_004148552.1| PREDICTED: transcription factor bHLH63-like [Cucumis sativus]
Length = 523
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 62/85 (72%), Gaps = 6/85 (7%)
Query: 245 AQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIID 302
Q+P VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK T KA MLDEII+
Sbjct: 241 VQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIIN 300
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAP 327
YV+ LQ QV+ LSM AAV P
Sbjct: 301 YVQSLQRQVEFLSMK----LAAVNP 321
>gi|118486023|gb|ABK94855.1| unknown [Populus trichocarpa]
Length = 348
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 76/117 (64%), Gaps = 9/117 (7%)
Query: 231 SGSTGGGGGGGNTPAQQPKQR---VRARRGQATDPHSIAERLRRERIAERMKALQELVPN 287
S G G G+ + QPK+ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP
Sbjct: 126 SKDAGKQGKQGSLGSDQPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPG 185
Query: 288 ANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCI 343
+K T KA MLDEII+YV+ LQ QV+ LSM A V P + D++ EG D
Sbjct: 186 CSKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-DLNIEGLLAKDVF 237
>gi|356552284|ref|XP_003544498.1| PREDICTED: transcription factor bHLH74-like [Glycine max]
Length = 429
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 60/75 (80%), Gaps = 4/75 (5%)
Query: 246 QQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEII 301
+ PK+ VRARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEII
Sbjct: 254 EAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEII 313
Query: 302 DYVKFLQLQVKVLSM 316
+YV+ LQ QV+ LSM
Sbjct: 314 NYVQSLQQQVEFLSM 328
>gi|449458041|ref|XP_004146756.1| PREDICTED: transcription factor BPE-like [Cucumis sativus]
Length = 298
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 73/114 (64%), Gaps = 10/114 (8%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKA 280
++++ +A +G +QPKQ VRARRGQATD HS+AER RRE+I+ERMK
Sbjct: 140 HESKTEAEPRSGKTEQNSQPTPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKI 199
Query: 281 LQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM------SRLGGAAAVAP 327
LQ+LVP NK KA +LDEII+Y++ LQ QV+ LSM SR+G V P
Sbjct: 200 LQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFP 253
>gi|295913405|gb|ADG57955.1| transcription factor [Lycoris longituba]
Length = 186
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 68/97 (70%), Gaps = 5/97 (5%)
Query: 225 QTQAQASGSTGGGGGGGNT-PAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKA 280
+ +A+AS NT P + PKQ VRARRGQATD HS+AER RRE+I+ERMK
Sbjct: 28 KXEAEASSGLCNKLADQNTQPLEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKI 87
Query: 281 LQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP NK KAS+LDEII+Y++ LQ QV+ LSM
Sbjct: 88 LQDLVPGCNKVIGKASVLDEIINYIQALQRQVEFLSM 124
>gi|225458914|ref|XP_002285475.1| PREDICTED: transcription factor bHLH74 [Vitis vinifera]
gi|302142156|emb|CBI19359.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 60/75 (80%), Gaps = 4/75 (5%)
Query: 246 QQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEII 301
+ PK+ VRARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEII
Sbjct: 256 EAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEII 315
Query: 302 DYVKFLQLQVKVLSM 316
+YV+ LQ QV+ LSM
Sbjct: 316 NYVQSLQQQVEFLSM 330
>gi|168046350|ref|XP_001775637.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673055|gb|EDQ59584.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 162
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 65/94 (69%), Gaps = 8/94 (8%)
Query: 238 GGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDK 293
G P PKQ VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K T K
Sbjct: 59 GATSKPPQDLPKQDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGK 118
Query: 294 ASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 327
A MLDEII+YV+ LQ Q++ LSM AAV P
Sbjct: 119 AVMLDEIINYVQSLQRQIEFLSMK----LAAVNP 148
>gi|449533331|ref|XP_004173629.1| PREDICTED: transcription factor bHLH63-like [Cucumis sativus]
Length = 456
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 249 VRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQ 308
Query: 311 VKVLSMSRLGGAAAVAP 327
V+ LSM AAV P
Sbjct: 309 VEFLSMK----LAAVNP 321
>gi|297744394|emb|CBI37656.3| unnamed protein product [Vitis vinifera]
Length = 345
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 145 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQ 204
Query: 311 VKVLSMSRLGGAAAVAP 327
V+ LSM AAV P
Sbjct: 205 VEFLSMK----LAAVNP 217
>gi|223702402|gb|ACN21632.1| putative basic helix-loop-helix protein BHLH7 [Lotus japonicus]
Length = 340
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 167 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQ 226
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 227 VEFLSM 232
>gi|297819388|ref|XP_002877577.1| hypothetical protein ARALYDRAFT_347878 [Arabidopsis lyrata subsp.
lyrata]
gi|297323415|gb|EFH53836.1| hypothetical protein ARALYDRAFT_347878 [Arabidopsis lyrata subsp.
lyrata]
Length = 260
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 64/92 (69%), Gaps = 4/92 (4%)
Query: 229 QASGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
+ G T GGG T + P + VRARRGQATD HS+AER RRE+I+ERMK LQ+L+
Sbjct: 114 RREGETSSGGGSKETEEKSPLKDYIHVRARRGQATDRHSLAERARREKISERMKFLQDLI 173
Query: 286 PNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
P NK KA +LDEII+Y++ LQ QV+ LSM
Sbjct: 174 PGCNKIIGKALVLDEIINYIQSLQRQVEFLSM 205
>gi|242082133|ref|XP_002445835.1| hypothetical protein SORBIDRAFT_07g026610 [Sorghum bicolor]
gi|241942185|gb|EES15330.1| hypothetical protein SORBIDRAFT_07g026610 [Sorghum bicolor]
Length = 397
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 65/95 (68%), Gaps = 8/95 (8%)
Query: 238 GGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DK 293
G G N +P + VRARRGQATD HS+AER+RRERI++RMK LQ+LVP NK K
Sbjct: 176 GKGKNAKLVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGK 235
Query: 294 ASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
A MLDEII+YV+ LQ QV+ LSM A V PL
Sbjct: 236 ALMLDEIINYVQSLQRQVEFLSMK----LATVNPL 266
>gi|223950211|gb|ACN29189.1| unknown [Zea mays]
gi|414869585|tpg|DAA48142.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 401
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 63/88 (71%), Gaps = 7/88 (7%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEI 300
P + P+ VRARRGQATD HS+AER+RRERI++RMK LQ+LVP NK KA MLDEI
Sbjct: 184 PVEPPRDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEI 243
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
I+YV+ LQ QV+ LSM A V PL
Sbjct: 244 INYVQSLQRQVEFLSMK----LATVNPL 267
>gi|253761888|ref|XP_002489318.1| hypothetical protein SORBIDRAFT_0010s017130 [Sorghum bicolor]
gi|241946966|gb|EES20111.1| hypothetical protein SORBIDRAFT_0010s017130 [Sorghum bicolor]
Length = 324
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 4/97 (4%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKA 280
++ Q A+G G A +P + VRARRGQATD HS+AER+RRE+I+ERMK
Sbjct: 208 DEEQKPAAGEAWHDNSNGKEVAAEPSKDYIHVRARRGQATDSHSLAERVRREKISERMKL 267
Query: 281 LQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP +K T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 268 LQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 304
>gi|212721436|ref|NP_001132323.1| uncharacterized protein LOC100193765 [Zea mays]
gi|194694078|gb|ACF81123.1| unknown [Zea mays]
gi|414869584|tpg|DAA48141.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 404
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 63/88 (71%), Gaps = 7/88 (7%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEI 300
P + P+ VRARRGQATD HS+AER+RRERI++RMK LQ+LVP NK KA MLDEI
Sbjct: 184 PVEPPRDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEI 243
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
I+YV+ LQ QV+ LSM A V PL
Sbjct: 244 INYVQSLQRQVEFLSMK----LATVNPL 267
>gi|357126478|ref|XP_003564914.1| PREDICTED: transcription factor bHLH62-like [Brachypodium
distachyon]
Length = 475
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 67/97 (69%), Gaps = 8/97 (8%)
Query: 228 AQASGSTGGG-----GGGGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKA 280
AQ+S GGG G + + PK VRARRG+ATD HS+AER+RRE+I++RMK
Sbjct: 239 AQSSSENGGGKKQGKDAGASKLPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKL 298
Query: 281 LQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 299 LQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 335
>gi|356500809|ref|XP_003519223.1| PREDICTED: transcription factor BPE-like [Glycine max]
Length = 255
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 65/91 (71%), Gaps = 4/91 (4%)
Query: 241 GNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASM 296
G P++ PKQ VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +
Sbjct: 114 GKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALV 173
Query: 297 LDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 327
LDEII+Y++ LQ QV+ LSM + +AP
Sbjct: 174 LDEIINYIQSLQRQVEFLSMKLEAVNSRIAP 204
>gi|294462520|gb|ADE76806.1| unknown [Picea sitchensis]
Length = 392
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 64/90 (71%), Gaps = 7/90 (7%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I ERMK LQ+LVP NK T KA M+DEI
Sbjct: 208 PPEPPKDYIHVRARRGQATDRHSLAERVRREKIGERMKLLQDLVPGCNKITGKAVMVDEI 267
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVA 330
I+YV+ LQ QV+ LSM AV P +A
Sbjct: 268 INYVQSLQCQVEFLSMK----LEAVNPKLA 293
>gi|224067162|ref|XP_002302386.1| predicted protein [Populus trichocarpa]
gi|222844112|gb|EEE81659.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 14/104 (13%)
Query: 219 PGPVMNQTQA--QASGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRER 273
PGP + QA QA T G + PK+ VRARRGQAT+ HS+AER+RRE+
Sbjct: 133 PGPNLRGKQAAKQAKDDTQSG--------EVPKENYFHVRARRGQATNSHSLAERVRREK 184
Query: 274 IAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
I+ERM+ LQELVP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 185 ISERMRMLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM 228
>gi|224122148|ref|XP_002318764.1| predicted protein [Populus trichocarpa]
gi|222859437|gb|EEE96984.1| predicted protein [Populus trichocarpa]
Length = 359
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 62/85 (72%), Gaps = 5/85 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 172 VRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQ 231
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSE 335
V+ LSM A+V P+ D E
Sbjct: 232 VEFLSMK----LASVNPMFYDFGME 252
>gi|255537964|ref|XP_002510047.1| DNA binding protein, putative [Ricinus communis]
gi|223550748|gb|EEF52234.1| DNA binding protein, putative [Ricinus communis]
Length = 408
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 60/75 (80%), Gaps = 4/75 (5%)
Query: 246 QQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEII 301
+ PK+ VRARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEII
Sbjct: 233 EAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEII 292
Query: 302 DYVKFLQLQVKVLSM 316
+YV+ LQ QV+ LSM
Sbjct: 293 NYVQSLQQQVEFLSM 307
>gi|357158920|ref|XP_003578282.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 415
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 74/112 (66%), Gaps = 6/112 (5%)
Query: 237 GGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKAS 295
G G + ++ VRARRGQAT+ HS+AERLRRE+I+ERMK LQ+LVP +K T KA
Sbjct: 226 GKGAKESSEKEDYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAV 285
Query: 296 MLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
MLDEII+YV+ LQ QV+ LSM A V P + D++ EG D ++ G
Sbjct: 286 MLDEIINYVQSLQRQVEFLSMK----LATVNPRL-DLNIEGLLSKDLLRFPG 332
>gi|356508360|ref|XP_003522925.1| PREDICTED: transcription factor bHLH63-like [Glycine max]
Length = 398
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 73/111 (65%), Gaps = 7/111 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERM LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 194 VRARRGQATDSHSLAERVRREKISERMNYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQ 253
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRN-PNGAQTTSAND 360
V+ LSM AAV P + D S + D N PN +++++D
Sbjct: 254 VEFLSMK----LAAVNPRL-DFSMDDLFDKDVFPTCAANFPNIGMSSTSSD 299
>gi|125664136|gb|ABN51065.1| basic helix-loop-helix protein [Sesamum indicum]
Length = 400
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRA+RGQAT+ HS+AER+RRERI+ERM+ LQELVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 234 VRAKRGQATNSHSLAERVRRERISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQ 293
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 294 VEFLSM 299
>gi|33339703|gb|AAQ14331.1|AF283506_1 MYC1 [Catharanthus roseus]
Length = 271
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 60/77 (77%), Gaps = 4/77 (5%)
Query: 244 PAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDE 299
PA+ PKQ VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDE
Sbjct: 133 PAEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDE 192
Query: 300 IIDYVKFLQLQVKVLSM 316
II+Y++ LQ QV+ LSM
Sbjct: 193 IINYIQSLQRQVEFLSM 209
>gi|326489817|dbj|BAJ93982.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 5/92 (5%)
Query: 230 ASGSTGGGGGGGNTPAQQPKQR----VRARRGQATDPHSIAERLRRERIAERMKALQELV 285
A+G+T GG G + ++ VRARRGQAT+ HS+AERLRRE+I+ERMK LQ+LV
Sbjct: 215 ATGTTTGGRSKGKGAKEGSEKEDYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLV 274
Query: 286 PNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
P +K T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 275 PGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 306
>gi|351720977|ref|NP_001237962.1| uncharacterized protein LOC100306638 [Glycine max]
gi|255629145|gb|ACU14917.1| unknown [Glycine max]
Length = 240
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 66/97 (68%), Gaps = 7/97 (7%)
Query: 227 QAQASGSTGGGGGGG---NTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKA 280
+A+A S+ GG N P + PK VRARRGQATD HS+AER RRE+I+ERMK
Sbjct: 83 KAEAEASSVGGNKSSEQSNKPCEAPKPDYIHVRARRGQATDSHSLAERARREKISERMKI 142
Query: 281 LQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+L P NK KA +LDEII+Y++ LQ QV+ LSM
Sbjct: 143 LQDLAPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 179
>gi|21539493|gb|AAM53299.1| unknown protein [Arabidopsis thaliana]
Length = 335
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HSIAER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 172 VRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQ 231
Query: 311 VKVLSM 316
++ LSM
Sbjct: 232 IEFLSM 237
>gi|20127066|gb|AAM10952.1|AF488596_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 335
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HSIAER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 172 VRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQ 231
Query: 311 VKVLSM 316
++ LSM
Sbjct: 232 IEFLSM 237
>gi|22329164|ref|NP_195179.2| transcription factor bHLH63 [Arabidopsis thaliana]
gi|75299602|sp|Q8GY61.1|BH063_ARATH RecName: Full=Transcription factor bHLH63; AltName: Full=Basic
helix-loop-helix protein 63; Short=AtbHLH63; Short=bHLH
63; AltName: Full=Transcription factor EN 84; AltName:
Full=bHLH transcription factor bHLH063
gi|26450757|dbj|BAC42487.1| putative bHLH transcription factor bHLH063 [Arabidopsis thaliana]
gi|28950907|gb|AAO63377.1| At4g34530 [Arabidopsis thaliana]
gi|332660989|gb|AEE86389.1| transcription factor bHLH63 [Arabidopsis thaliana]
Length = 335
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HSIAER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 172 VRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQ 231
Query: 311 VKVLSM 316
++ LSM
Sbjct: 232 IEFLSM 237
>gi|356498105|ref|XP_003517894.1| PREDICTED: transcription factor BPE-like [Glycine max]
Length = 264
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 66/93 (70%), Gaps = 4/93 (4%)
Query: 241 GNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASM 296
G P++ PKQ VRARRGQATD HS+AER RRE+I+ERMK LQ++VP NK KA +
Sbjct: 123 GKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALV 182
Query: 297 LDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
LDEII+Y++ LQ QV+ LSM + +AP +
Sbjct: 183 LDEIINYIQSLQRQVEFLSMKLEAVNSRLAPRI 215
>gi|326525931|dbj|BAJ93142.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 474
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 67/95 (70%), Gaps = 6/95 (6%)
Query: 228 AQASGSTGG---GGGGGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
AQ+S GG G G + + PK VRARRG+ATD HS+AER+RRE+I++RMK LQ
Sbjct: 235 AQSSSENGGKKQGKDGASKLPEPPKDFIHVRARRGEATDSHSLAERVRREKISQRMKLLQ 294
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 295 DLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 329
>gi|449533777|ref|XP_004173848.1| PREDICTED: transcription factor BPE-like, partial [Cucumis sativus]
Length = 174
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 67/95 (70%), Gaps = 11/95 (11%)
Query: 243 TPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLD 298
TP +QPKQ VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LD
Sbjct: 36 TP-EQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLD 94
Query: 299 EIIDYVKFLQLQVKVLSM------SRLGGAAAVAP 327
EII+Y++ LQ QV+ LSM SR+G V P
Sbjct: 95 EIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFP 129
>gi|449473858|ref|XP_004154003.1| PREDICTED: uncharacterized protein LOC101205943 [Cucumis sativus]
gi|449518641|ref|XP_004166345.1| PREDICTED: uncharacterized LOC101205943 [Cucumis sativus]
Length = 372
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 63/88 (71%), Gaps = 5/88 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 180 VRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQ 239
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGG 338
V+ LSM A++ P+ D + G
Sbjct: 240 VEFLSMK----LASLNPIFFDFRMDLDG 263
>gi|3096922|emb|CAA18832.1| putative protein [Arabidopsis thaliana]
gi|7270403|emb|CAB80170.1| putative protein [Arabidopsis thaliana]
Length = 324
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HSIAER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 172 VRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQ 231
Query: 311 VKVLSM 316
++ LSM
Sbjct: 232 IEFLSM 237
>gi|224081861|ref|XP_002306505.1| predicted protein [Populus trichocarpa]
gi|222855954|gb|EEE93501.1| predicted protein [Populus trichocarpa]
Length = 407
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 240 VRARRGQATNSHSLAERVRREKISERMRMLQELVPGCNKITGKAVMLDEIINYVQSLQQQ 299
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 300 VEFLSM 305
>gi|290767965|gb|ADD60674.1| putative TA1 protein [Oryza granulata]
Length = 430
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 73/107 (68%), Gaps = 9/107 (8%)
Query: 245 AQQPKQR---VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
A PK+ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEI
Sbjct: 243 AGSPKEEYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEI 302
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
I+YV+ LQ QV+ LSM A+V P + D++ E D Q+ G
Sbjct: 303 INYVQSLQRQVEFLSMK----LASVNPTL-DLNIESILSKDIFQSRG 344
>gi|449447083|ref|XP_004141299.1| PREDICTED: transcription factor bHLH74-like [Cucumis sativus]
Length = 249
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 61/76 (80%), Gaps = 4/76 (5%)
Query: 245 AQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
A+ PK+ VRARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEI
Sbjct: 69 AEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEI 128
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 129 INYVQSLQQQVEFLSM 144
>gi|326495502|dbj|BAJ85847.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 474
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 67/95 (70%), Gaps = 6/95 (6%)
Query: 228 AQASGSTGG---GGGGGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
AQ+S GG G G + + PK VRARRG+ATD HS+AER+RRE+I++RMK LQ
Sbjct: 235 AQSSSENGGKKQGKDGASKLPEPPKDFIHVRARRGEATDSHSLAERVRREKISQRMKLLQ 294
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 295 DLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 329
>gi|297802514|ref|XP_002869141.1| hypothetical protein ARALYDRAFT_491205 [Arabidopsis lyrata subsp.
lyrata]
gi|297314977|gb|EFH45400.1| hypothetical protein ARALYDRAFT_491205 [Arabidopsis lyrata subsp.
lyrata]
Length = 333
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HSIAER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 169 VRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQ 228
Query: 311 VKVLSM 316
++ LSM
Sbjct: 229 IEFLSM 234
>gi|50509096|dbj|BAD30156.1| putative bHLH protein [Oryza sativa Japonica Group]
Length = 268
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 63/88 (71%), Gaps = 4/88 (4%)
Query: 231 SGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPN 287
SG++ TP + PKQ VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP
Sbjct: 104 SGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 163
Query: 288 ANKT-DKASMLDEIIDYVKFLQLQVKVL 314
NK KAS+LDEII+Y++ LQ QV+ +
Sbjct: 164 CNKVIGKASVLDEIINYIQSLQHQVEFM 191
>gi|449454949|ref|XP_004145216.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 340
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 63/88 (71%), Gaps = 5/88 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 148 VRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQ 207
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGG 338
V+ LSM A++ P+ D + G
Sbjct: 208 VEFLSMK----LASLNPIFFDFRMDLDG 231
>gi|339716200|gb|AEJ88339.1| putative MYC protein [Tamarix hispida]
Length = 301
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 69/97 (71%), Gaps = 4/97 (4%)
Query: 224 NQTQAQASGSTGGGGGGGNT-PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKA 280
++T +AS S GG ++ P + PK VRARRGQATD HS+AER RRE+I+ERMK
Sbjct: 138 SKTGIEASSSGGGKSAEKSSQPPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKI 197
Query: 281 LQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
LQ+LVP NK KA +LDEII+Y++ LQ QV+ LSM
Sbjct: 198 LQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 234
>gi|449515097|ref|XP_004164586.1| PREDICTED: transcription factor bHLH84-like [Cucumis sativus]
Length = 327
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 56/79 (70%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
PK + RA RG ATDP S+ R RRERI ER++ LQ+LVPN K D ++ML+E + YVKFL
Sbjct: 233 PKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFL 292
Query: 308 QLQVKVLSMSRLGGAAAVA 326
QLQ+K+LS L A +A
Sbjct: 293 QLQIKLLSSDDLWMYAPIA 311
>gi|414591363|tpg|DAA41934.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 448
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 278 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQCQ 337
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 338 VEFLSM 343
>gi|255646074|gb|ACU23524.1| unknown [Glycine max]
Length = 402
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+L+P NK KA MLDEII+YV+ LQ Q
Sbjct: 192 VRARRGQATDSHSLAERVRREKISERMKYLQDLIPGCNKVAGKAGMLDEIINYVQSLQRQ 251
Query: 311 VKVLSMSRLGGAAAVAP 327
V+ LSM AAV P
Sbjct: 252 VEFLSMK----LAAVNP 264
>gi|357473295|ref|XP_003606932.1| BHLH transcription factor [Medicago truncatula]
gi|355507987|gb|AES89129.1| BHLH transcription factor [Medicago truncatula]
Length = 344
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK KA MLDEII+YV+ LQ Q
Sbjct: 143 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQ 202
Query: 311 VKVLSMSRLGGAAAVAP 327
V+ LSM AAV P
Sbjct: 203 VEFLSMK----LAAVNP 215
>gi|449447291|ref|XP_004141402.1| PREDICTED: transcription factor bHLH84-like [Cucumis sativus]
Length = 327
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 56/79 (70%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
PK + RA RG ATDP S+ R RRERI ER++ LQ+LVPN K D ++ML+E + YVKFL
Sbjct: 233 PKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFL 292
Query: 308 QLQVKVLSMSRLGGAAAVA 326
QLQ+K+LS L A +A
Sbjct: 293 QLQIKLLSSDDLWMYAPIA 311
>gi|125558995|gb|EAZ04531.1| hypothetical protein OsI_26681 [Oryza sativa Indica Group]
Length = 279
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 63/101 (62%)
Query: 226 TQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
TQ+ +S ++ G GN K RA RG ATDP S+ R RRERI ER++ LQ LV
Sbjct: 161 TQSSSSCTSEEGNLEGNAKPSSKKMGTRANRGAATDPQSLYARKRRERINERLRILQNLV 220
Query: 286 PNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
PN K D ++ML+E + YVKFLQLQ+K+LS + A +A
Sbjct: 221 PNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDMWMYAPIA 261
>gi|194699354|gb|ACF83761.1| unknown [Zea mays]
Length = 353
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 62/84 (73%), Gaps = 4/84 (4%)
Query: 237 GGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TD 292
G G PA +P + VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK
Sbjct: 139 GKGKTAKPAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVG 198
Query: 293 KASMLDEIIDYVKFLQLQVKVLSM 316
KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 199 KALMLDEIINYVQSLQQQVEFLSM 222
>gi|115479723|ref|NP_001063455.1| Os09g0474100 [Oryza sativa Japonica Group]
gi|50726625|dbj|BAD34345.1| TA1 protein-like [Oryza sativa Japonica Group]
gi|113631688|dbj|BAF25369.1| Os09g0474100 [Oryza sativa Japonica Group]
gi|215768249|dbj|BAH00478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|323388941|gb|ADX60275.1| bHLH- transcription factor [Oryza sativa Japonica Group]
Length = 428
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AERLRRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 248 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 307
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 308 VEFLSM 313
>gi|242045042|ref|XP_002460392.1| hypothetical protein SORBIDRAFT_02g027430 [Sorghum bicolor]
gi|241923769|gb|EER96913.1| hypothetical protein SORBIDRAFT_02g027430 [Sorghum bicolor]
Length = 438
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AERLRRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 256 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 315
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 316 VEFLSM 321
>gi|194692938|gb|ACF80553.1| unknown [Zea mays]
gi|414886197|tpg|DAA62211.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 353
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 62/84 (73%), Gaps = 4/84 (4%)
Query: 237 GGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TD 292
G G PA +P + VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK
Sbjct: 139 GKGKTAKPAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVG 198
Query: 293 KASMLDEIIDYVKFLQLQVKVLSM 316
KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 199 KALMLDEIINYVQSLQQQVEFLSM 222
>gi|218202318|gb|EEC84745.1| hypothetical protein OsI_31742 [Oryza sativa Indica Group]
Length = 428
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 6/97 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AERLRRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 248 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 307
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
V+ LSM A V P + D++ EG D ++ G
Sbjct: 308 VEFLSMK----LATVNPRL-DLNIEGLLSKDLLRFPG 339
>gi|168039065|ref|XP_001772019.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676620|gb|EDQ63100.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 147
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 54 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQ 113
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 114 VESLSM 119
>gi|356545203|ref|XP_003541034.1| PREDICTED: transcription factor bHLH63-like [Glycine max]
Length = 402
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+L+P NK KA MLDEII+YV+ LQ Q
Sbjct: 192 VRARRGQATDSHSLAERVRREKISERMKYLQDLIPGCNKVAGKAGMLDEIINYVQSLQRQ 251
Query: 311 VKVLSMSRLGGAAAVAP 327
V+ LSM AAV P
Sbjct: 252 VEFLSMK----LAAVNP 264
>gi|414886196|tpg|DAA62210.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 354
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 62/84 (73%), Gaps = 4/84 (4%)
Query: 237 GGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TD 292
G G PA +P + VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK
Sbjct: 139 GKGKTAKPAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVG 198
Query: 293 KASMLDEIIDYVKFLQLQVKVLSM 316
KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 199 KALMLDEIINYVQSLQQQVEFLSM 222
>gi|219363183|ref|NP_001136483.1| uncharacterized protein LOC100216597 [Zea mays]
gi|194695886|gb|ACF82027.1| unknown [Zea mays]
gi|413920793|gb|AFW60725.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 469
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 68/100 (68%), Gaps = 7/100 (7%)
Query: 224 NQTQAQASGSTGGGGGGGN----TPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAER 277
++ + A+G G G G A+ PK VRARRGQATD HS+AER+RRE+I ER
Sbjct: 222 DEERKPAAGEGWRGSGKGKELVAADAEPPKDYIHVRARRGQATDSHSLAERVRREKIGER 281
Query: 278 MKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
MK LQ+LVP +K T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 282 MKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 321
>gi|414885894|tpg|DAA61908.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 434
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 6/97 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AERLRRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 253 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 312
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
V+ LSM A V P + D++ EG D ++ G
Sbjct: 313 VEFLSMK----LATVNPRL-DLNIEGLLSKDLLRFPG 344
>gi|290768004|gb|ADD60710.1| putative TA1 protein [Oryza brachyantha]
Length = 426
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%), Gaps = 6/91 (6%)
Query: 230 ASGSTGGGGGGGNTPAQQPKQR---VRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
ASG + G N A PK+ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP
Sbjct: 226 ASGKSSGKQAKDN--AGSPKEEYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVP 283
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
+K T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 284 GCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 314
>gi|226497606|ref|NP_001151910.1| BHLH transcription factor [Zea mays]
gi|195650891|gb|ACG44913.1| BHLH transcription factor [Zea mays]
Length = 354
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 62/84 (73%), Gaps = 4/84 (4%)
Query: 237 GGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TD 292
G G PA +P + VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK
Sbjct: 139 GKGKTAKPAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVG 198
Query: 293 KASMLDEIIDYVKFLQLQVKVLSM 316
KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 199 KALMLDEIINYVQSLQQQVEFLSM 222
>gi|168063707|ref|XP_001783811.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664693|gb|EDQ51403.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 164
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 63/84 (75%), Gaps = 8/84 (9%)
Query: 248 PKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDY 303
PKQ VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+Y
Sbjct: 66 PKQDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINY 125
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAP 327
V+ LQ Q++ LSM AAV P
Sbjct: 126 VQSLQRQIEFLSMK----LAAVNP 145
>gi|302790872|ref|XP_002977203.1| hypothetical protein SELMODRAFT_106386 [Selaginella moellendorffii]
gi|300155179|gb|EFJ21812.1| hypothetical protein SELMODRAFT_106386 [Selaginella moellendorffii]
Length = 158
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%), Gaps = 7/87 (8%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEI
Sbjct: 48 PPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 107
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAP 327
I+YV+ LQ QV+ LSM AAV P
Sbjct: 108 INYVQSLQRQVEFLSMK----LAAVNP 130
>gi|388503848|gb|AFK39990.1| unknown [Lotus japonicus]
Length = 248
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIID 302
P +Q VRARRGQATD HSIAER RRE+I+ERMK LQ+LVP NK KA +LDEII+
Sbjct: 111 PPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIIN 170
Query: 303 YVKFLQLQVKVLSM 316
Y++ LQ QV+ LSM
Sbjct: 171 YIQSLQHQVEFLSM 184
>gi|255558300|ref|XP_002520177.1| DNA binding protein, putative [Ricinus communis]
gi|223540669|gb|EEF42232.1| DNA binding protein, putative [Ricinus communis]
Length = 265
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 67/95 (70%), Gaps = 4/95 (4%)
Query: 226 TQAQASGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
++++A S+G P + PKQ VRARRGQATD HS+AER RRE+I+ERMK LQ
Sbjct: 109 SKSEAEPSSGKHVEQNTQPPELPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQ 168
Query: 283 ELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
+LVP NK KA +LDEII+Y++ LQ QV+ LSM
Sbjct: 169 DLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 203
>gi|356500821|ref|XP_003519229.1| PREDICTED: transcription factor BPE-like [Glycine max]
Length = 260
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 60/80 (75%), Gaps = 4/80 (5%)
Query: 241 GNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASM 296
G P++ PKQ VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +
Sbjct: 119 GKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALV 178
Query: 297 LDEIIDYVKFLQLQVKVLSM 316
LDEII+Y++ LQ Q + LSM
Sbjct: 179 LDEIINYIQSLQRQAEFLSM 198
>gi|226492880|ref|NP_001152266.1| BHLH transcription factor [Zea mays]
gi|195654447|gb|ACG46691.1| BHLH transcription factor [Zea mays]
Length = 428
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 258 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQCQ 317
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 318 VEFLSM 323
>gi|115461581|ref|NP_001054390.1| Os05g0103000 [Oryza sativa Japonica Group]
gi|57863903|gb|AAW56931.1| unknown protein [Oryza sativa Japonica Group]
gi|57863910|gb|AAS88824.2| unknown protein [Oryza sativa Japonica Group]
gi|113577941|dbj|BAF16304.1| Os05g0103000 [Oryza sativa Japonica Group]
gi|215686863|dbj|BAG89713.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629873|gb|EEE62005.1| hypothetical protein OsJ_16787 [Oryza sativa Japonica Group]
gi|323388921|gb|ADX60265.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 339
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 66/96 (68%), Gaps = 7/96 (7%)
Query: 238 GGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASM 296
GG PA VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA M
Sbjct: 168 AAGGEPPAGY--IHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALM 225
Query: 297 LDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADM 332
LDEII YV+ LQ QV+ LSM A+++PL+ +
Sbjct: 226 LDEIISYVQSLQNQVEFLSMK----LASLSPLMYEF 257
>gi|449463525|ref|XP_004149484.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 533
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 4/77 (5%)
Query: 244 PAQQPKQR---VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDE 299
P+ PK+ VRARRGQAT+ HS+AER+RRE+I+ERM+ LQ+LVP +K T KA MLDE
Sbjct: 330 PSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDE 389
Query: 300 IIDYVKFLQLQVKVLSM 316
II+YV+ LQ QV+ LSM
Sbjct: 390 IINYVQSLQRQVEFLSM 406
>gi|297851058|ref|XP_002893410.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297339252|gb|EFH69669.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 347
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%), Gaps = 6/97 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 168 MRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQ 227
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
++ LSM +AV P V D + E D +Q++
Sbjct: 228 IEFLSMK----LSAVNP-VLDFNLESLLAKDALQSSA 259
>gi|297835410|ref|XP_002885587.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297331427|gb|EFH61846.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 374
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 58/76 (76%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER RRE+I+ERM LQ+LVP N+ T KA MLDEI
Sbjct: 184 PPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEI 243
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 244 INYVQSLQRQVEFLSM 259
>gi|302766193|ref|XP_002966517.1| hypothetical protein SELMODRAFT_72702 [Selaginella moellendorffii]
gi|302801203|ref|XP_002982358.1| hypothetical protein SELMODRAFT_72704 [Selaginella moellendorffii]
gi|300149950|gb|EFJ16603.1| hypothetical protein SELMODRAFT_72704 [Selaginella moellendorffii]
gi|300165937|gb|EFJ32544.1| hypothetical protein SELMODRAFT_72702 [Selaginella moellendorffii]
Length = 102
Score = 95.1 bits (235), Expect = 6e-17, Method: Composition-based stats.
Identities = 55/88 (62%), Positives = 65/88 (73%), Gaps = 8/88 (9%)
Query: 244 PAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDE 299
P + PKQ VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDE
Sbjct: 5 PPEPPKQDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 64
Query: 300 IIDYVKFLQLQVKVLSMSRLGGAAAVAP 327
II+YV+ LQ QV+ LSM AAV P
Sbjct: 65 IINYVQSLQRQVEFLSMK----LAAVNP 88
>gi|225456461|ref|XP_002284464.1| PREDICTED: transcription factor bHLH137 [Vitis vinifera]
gi|297734492|emb|CBI15739.3| unnamed protein product [Vitis vinifera]
Length = 349
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 61/82 (74%), Gaps = 5/82 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 171 VRARRGQATDSHSLAERVRREKISERMKLLQALVPGCDKVTGKALMLDEIINYVQSLQNQ 230
Query: 311 VKVLSMSRLGGAAAVAPLVADM 332
V+ LSM A+V P+ D
Sbjct: 231 VEFLSM----KLASVNPMFYDF 248
>gi|449518045|ref|XP_004166054.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 533
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 4/77 (5%)
Query: 244 PAQQPKQR---VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDE 299
P+ PK+ VRARRGQAT+ HS+AER+RRE+I+ERM+ LQ+LVP +K T KA MLDE
Sbjct: 330 PSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDE 389
Query: 300 IIDYVKFLQLQVKVLSM 316
II+YV+ LQ QV+ LSM
Sbjct: 390 IINYVQSLQRQVEFLSM 406
>gi|116787019|gb|ABK24344.1| unknown [Picea sitchensis]
Length = 467
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I +RMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 296 VRARRGQATDSHSLAERVRREKINQRMKFLQDLVPTCNKVTGKAVMLDEIINYVQSLQHQ 355
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 356 VEFLSM 361
>gi|79318615|ref|NP_001031093.1| transcription factor bHLH76 [Arabidopsis thaliana]
gi|45935021|gb|AAS79545.1| putative transcription factor [Arabidopsis thaliana]
gi|46367460|emb|CAG25856.1| hypothetical protein [Arabidopsis thaliana]
gi|332192548|gb|AEE30669.1| transcription factor bHLH76 [Arabidopsis thaliana]
Length = 339
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%), Gaps = 6/97 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 172 MRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQ 231
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
++ LSM +AV P V D + E D +Q++
Sbjct: 232 IEFLSMK----LSAVNP-VLDFNLESLLAKDALQSSA 263
>gi|290767992|gb|ADD60699.1| putative TA1 protein [Oryza officinalis]
Length = 435
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 9/107 (8%)
Query: 245 AQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
A PK+ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEI
Sbjct: 248 AGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEI 307
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
I+YV+ LQ QV+ LSM A+V P + D + E D Q+ G
Sbjct: 308 INYVQSLQRQVEFLSMK----LASVNPTL-DFNIERILSKDIFQSRG 349
>gi|15222679|ref|NP_173950.1| transcription factor bHLH76 [Arabidopsis thaliana]
gi|42571645|ref|NP_973913.1| transcription factor bHLH76 [Arabidopsis thaliana]
gi|75308803|sp|Q9C670.1|BH076_ARATH RecName: Full=Transcription factor bHLH76; AltName: Full=Basic
helix-loop-helix protein 76; Short=AtbHLH76; Short=bHLH
76; AltName: Full=Transcription factor EN 83; AltName:
Full=bHLH transcription factor bHLH076
gi|12321176|gb|AAG50678.1|AC079829_11 bHLH transcription factor GBOF-1, putative [Arabidopsis thaliana]
gi|26449804|dbj|BAC42025.1| putative transcription factor bHLH076 [Arabidopsis thaliana]
gi|28950949|gb|AAO63398.1| At1g26260 [Arabidopsis thaliana]
gi|332192546|gb|AEE30667.1| transcription factor bHLH76 [Arabidopsis thaliana]
gi|332192547|gb|AEE30668.1| transcription factor bHLH76 [Arabidopsis thaliana]
Length = 390
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%), Gaps = 6/97 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 223 MRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQ 282
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
++ LSM +AV P V D + E D +Q++
Sbjct: 283 IEFLSMK----LSAVNP-VLDFNLESLLAKDALQSSA 314
>gi|357520555|ref|XP_003630566.1| BHLH transcription factor [Medicago truncatula]
gi|355524588|gb|AET05042.1| BHLH transcription factor [Medicago truncatula]
Length = 327
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 63/83 (75%), Gaps = 5/83 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP ++ T KA +LDEII+YV+ LQ Q
Sbjct: 145 VRARRGQATDSHSLAERVRREKISERMKILQQLVPGCDRVTGKALVLDEIINYVQSLQNQ 204
Query: 311 VKVLSMSRLGGAAAVAPLVADMS 333
V+ LSM A+V P+ D +
Sbjct: 205 VEFLSM----KLASVNPIFFDFA 223
>gi|22331295|ref|NP_189011.2| transcription factor bHLH77 [Arabidopsis thaliana]
gi|75311240|sp|Q9LK48.1|BH077_ARATH RecName: Full=Transcription factor bHLH77; AltName: Full=Basic
helix-loop-helix protein 77; Short=AtbHLH77; Short=bHLH
77; AltName: Full=Transcription factor EN 87; AltName:
Full=bHLH transcription factor bHLH077
gi|9293943|dbj|BAB01846.1| unnamed protein product [Arabidopsis thaliana]
gi|17529310|gb|AAL38882.1| putative DNA-binding protein [Arabidopsis thaliana]
gi|20465453|gb|AAM20186.1| putative DNA-binding protein [Arabidopsis thaliana]
gi|332643281|gb|AEE76802.1| transcription factor bHLH77 [Arabidopsis thaliana]
Length = 371
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 58/76 (76%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQATD HS+AER RRE+I+ERM LQ+LVP N+ T KA MLDEI
Sbjct: 181 PPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEI 240
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ LQ QV+ LSM
Sbjct: 241 INYVQSLQRQVEFLSM 256
>gi|356509797|ref|XP_003523632.1| PREDICTED: transcription factor bHLH74-like [Glycine max]
Length = 376
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN-KTDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP + KT KA MLDEII+YV+ LQ Q
Sbjct: 231 VRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKKTGKAVMLDEIINYVQSLQQQ 290
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 291 VEFLSM 296
>gi|222641764|gb|EEE69896.1| hypothetical protein OsJ_29731 [Oryza sativa Japonica Group]
Length = 809
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AERLRRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 629 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 688
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 689 VEFLSM 694
>gi|414590707|tpg|DAA41278.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 286
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 63/101 (62%)
Query: 226 TQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
TQ+ +S ++ G GNT + K RA RG AT+P S+ R RRERI ER++ LQ LV
Sbjct: 168 TQSSSSCTSEDGNFEGNTNSSSKKTCARASRGAATEPQSLYARKRRERINERLRILQNLV 227
Query: 286 PNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
PN K D ++ML+E YVKFLQLQ+K+LS A +A
Sbjct: 228 PNGTKVDISTMLEEAAQYVKFLQLQIKLLSCDDTWMYAPIA 268
>gi|293332515|ref|NP_001169165.1| uncharacterized protein LOC100383015 [Zea mays]
gi|223975273|gb|ACN31824.1| unknown [Zea mays]
Length = 443
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 83/136 (61%), Gaps = 16/136 (11%)
Query: 223 MNQTQAQASGSTGGGGGGGNTPAQQPKQ----------RVRARRGQATDPHSIAERLRRE 272
M++ + + +T G G G + + K+ +RARRGQAT+ HS+AERLRRE
Sbjct: 207 MDKGEESSPATTTAGAGPGKSRGKGEKEVPESQKEDYIHIRARRGQATNSHSLAERLRRE 266
Query: 273 RIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAD 331
+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ QV+ LSM A V P + D
Sbjct: 267 KISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-D 321
Query: 332 MSSEGGGGGDCIQANG 347
++ EG D ++ G
Sbjct: 322 LNIEGLLSKDLLRFPG 337
>gi|390979910|gb|AFM30927.1| basic helix-loop-helix [Solanum lycopersicum]
Length = 330
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 60/82 (73%), Gaps = 5/82 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 153 VRARRGQATDSHSLAERVRREKISERMKILQSLVPGCDKVTGKALMLDEIINYVQSLQNQ 212
Query: 311 VKVLSMSRLGGAAAVAPLVADM 332
V+ LSM ++ P+ D
Sbjct: 213 VEFLSMK----LTSLNPMYYDF 230
>gi|296083058|emb|CBI22462.3| unnamed protein product [Vitis vinifera]
Length = 350
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 57/84 (67%)
Query: 243 TPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIID 302
+ A K + RA RG ATDP S+ R RRERI ER+K LQ LVPN K D ++ML+E ++
Sbjct: 250 SAALNSKDKARASRGSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVE 309
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVA 326
YVKFLQLQ+K+LS L A +A
Sbjct: 310 YVKFLQLQIKLLSSDDLWMYAPLA 333
>gi|414589749|tpg|DAA40320.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 453
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 83/136 (61%), Gaps = 16/136 (11%)
Query: 223 MNQTQAQASGSTGGGGGGGNTPAQQPKQ----------RVRARRGQATDPHSIAERLRRE 272
M++ + + +T G G G + + K+ +RARRGQAT+ HS+AERLRRE
Sbjct: 217 MDKGEESSPATTTAGAGPGKSRGKGEKEVPESQKEDYIHIRARRGQATNSHSLAERLRRE 276
Query: 273 RIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAD 331
+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ QV+ LSM A V P + D
Sbjct: 277 KISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LATVNPRL-D 331
Query: 332 MSSEGGGGGDCIQANG 347
++ EG D ++ G
Sbjct: 332 LNIEGLLSKDLLRFPG 347
>gi|225428979|ref|XP_002264083.1| PREDICTED: transcription factor bHLH84-like [Vitis vinifera]
Length = 345
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 60/97 (61%)
Query: 230 ASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN 289
AS G + A K + RA RG ATDP S+ R RRERI ER+K LQ LVPN
Sbjct: 232 ASQELNGSSSPKGSAALNSKDKARASRGSATDPQSLYARKRRERINERLKILQNLVPNGT 291
Query: 290 KTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
K D ++ML+E ++YVKFLQLQ+K+LS L A +A
Sbjct: 292 KVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPLA 328
>gi|147866312|emb|CAN79863.1| hypothetical protein VITISV_021999 [Vitis vinifera]
Length = 346
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 60/97 (61%)
Query: 230 ASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN 289
AS G + A K + RA RG ATDP S+ R RRERI ER+K LQ LVPN
Sbjct: 233 ASQELNGSSSPKGSAALNSKDKARASRGSATDPQSLYARKRRERINERLKILQNLVPNGT 292
Query: 290 KTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
K D ++ML+E ++YVKFLQLQ+K+LS L A +A
Sbjct: 293 KVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPLA 329
>gi|414871802|tpg|DAA50359.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 562
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Query: 245 AQQPKQRVR-ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
A++P Q++ ARR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y
Sbjct: 319 ARKPPQKMTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 378
Query: 304 VKFLQLQVKVLSMSRLGGAAAVA 326
+K LQLQV+++ M G AA A
Sbjct: 379 LKSLQLQVQMMWMGSAGIAAPPA 401
>gi|359494803|ref|XP_003634844.1| PREDICTED: transcription factor bHLH74-like [Vitis vinifera]
gi|296090643|emb|CBI41042.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRA+RGQAT+ HS+AER+RRERI+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 246 VRAKRGQATNSHSLAERVRRERISERMKFLQDLVPGCNKITGKAVMLDEIINYVQSLQRQ 305
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 306 VEFLSM 311
>gi|302781847|ref|XP_002972697.1| hypothetical protein SELMODRAFT_413232 [Selaginella moellendorffii]
gi|300159298|gb|EFJ25918.1| hypothetical protein SELMODRAFT_413232 [Selaginella moellendorffii]
Length = 442
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 56/78 (71%)
Query: 238 GGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASML 297
G PA + RAR+G A DP SIA R RRERI++R+K LQELVPN+ K D +ML
Sbjct: 344 GKAPRVPALNTNFKPRARQGSANDPQSIAARHRRERISDRLKILQELVPNSTKVDLVTML 403
Query: 298 DEIIDYVKFLQLQVKVLS 315
++ I+YVKFLQLQVKVL+
Sbjct: 404 EKAINYVKFLQLQVKVLT 421
>gi|110738493|dbj|BAF01172.1| bHLH transcription factor like protein [Arabidopsis thaliana]
Length = 314
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 154 MRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQ 213
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRN 349
V+ LSM A V P + ++ + D +Q+ RN
Sbjct: 214 VEFLSMK----LATVNPEI-NIDIDRILAKDLLQSRDRN 247
>gi|226493691|ref|NP_001147809.1| PIL5 [Zea mays]
gi|195613866|gb|ACG28763.1| PIL5 [Zea mays]
Length = 539
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Query: 245 AQQPKQRVR-ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
A++P Q++ ARR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y
Sbjct: 319 ARKPPQKMTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 378
Query: 304 VKFLQLQVKVLSMSRLGGAAAVA 326
+K LQLQV+++ M G AA A
Sbjct: 379 LKSLQLQVQMMWMGSAGIAAPPA 401
>gi|168056080|ref|XP_001780050.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668548|gb|EDQ55153.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 69 VRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 128
Query: 311 VKVLSMSRLGGAAAVAP 327
++ LSM AAV P
Sbjct: 129 IEFLSM----KLAAVNP 141
>gi|226508342|ref|NP_001152551.1| DNA binding protein [Zea mays]
gi|195657419|gb|ACG48177.1| DNA binding protein [Zea mays]
Length = 454
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 70/105 (66%), Gaps = 11/105 (10%)
Query: 223 MNQTQAQASGSTGGGGGGGNTPAQQPKQ----------RVRARRGQATDPHSIAERLRRE 272
M++ + + +T G G G + + K+ +RARRGQAT+ HS+AERLRRE
Sbjct: 218 MDKGEESSPATTTAGAGPGKSRGKGEKEVPESQKEDYIHIRARRGQATNSHSLAERLRRE 277
Query: 273 RIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 278 KISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 322
>gi|34393609|dbj|BAC83262.1| transcription factor (bHLH)-like protein [Oryza sativa Japonica
Group]
gi|50509377|dbj|BAD30932.1| transcription factor (bHLH)-like protein [Oryza sativa Japonica
Group]
gi|125600907|gb|EAZ40483.1| hypothetical protein OsJ_24937 [Oryza sativa Japonica Group]
Length = 279
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 62/101 (61%)
Query: 226 TQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
TQ+ +S ++ G GN K RA RG ATDP S+ R RRERI ER++ LQ LV
Sbjct: 161 TQSSSSCTSEEGNLEGNAKPSSKKMGTRANRGAATDPQSLYARKRRERINERLRILQNLV 220
Query: 286 PNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
PN K D ++ML+E + YVKFLQLQ+K+LS A +A
Sbjct: 221 PNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDTWMYAPIA 261
>gi|255645941|gb|ACU23459.1| unknown [Glycine max]
Length = 193
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 129 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQ 188
Query: 311 VKVLS 315
V+ LS
Sbjct: 189 VEFLS 193
>gi|218192387|gb|EEC74814.1| hypothetical protein OsI_10634 [Oryza sativa Indica Group]
gi|222624516|gb|EEE58648.1| hypothetical protein OsJ_10029 [Oryza sativa Japonica Group]
Length = 307
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q + S G G +++ VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP
Sbjct: 100 QRELSMEHAGEKAGDADASREEYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 159
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 160 GCNKITGKAMMLDEIINYVQSLQRQVEFLSM 190
>gi|226500746|ref|NP_001149110.1| LOC100282732 [Zea mays]
gi|195624818|gb|ACG34239.1| bHLH transcription factor GBOF-1 [Zea mays]
Length = 287
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 68/87 (78%), Gaps = 7/87 (8%)
Query: 246 QQPK--QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIID 302
++PK VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+
Sbjct: 103 EEPKGYIHVRARRGQATDNHSLAERVRRERISERMRVLQALVPGCDKVTGKALILDEIIN 162
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAPLV 329
YV+ LQ QV+ LSM R+ A+++P++
Sbjct: 163 YVQSLQNQVEFLSM-RI---ASLSPVL 185
>gi|290767978|gb|ADD60686.1| putative TA1 protein [Oryza australiensis]
Length = 436
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 76/122 (62%), Gaps = 11/122 (9%)
Query: 230 ASGSTGGGGGGGNTPAQQPKQR---VRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
ASG + G N A PK+ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ LVP
Sbjct: 236 ASGKSSGKQTKDN--AGSPKEEYIHVRARRGQATNSHSLAERVRREKISERMKYLQNLVP 293
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQA 345
K T KA MLDEII+YV+ LQ QV+ LSM A+V P + D + E D Q+
Sbjct: 294 GCTKVTGKAVMLDEIINYVQSLQRQVEFLSMK----LASVNPTL-DFNIERILSKDIFQS 348
Query: 346 NG 347
G
Sbjct: 349 RG 350
>gi|115467562|ref|NP_001057380.1| Os06g0275600 [Oryza sativa Japonica Group]
gi|55295989|dbj|BAD68029.1| putative TA1 protein [Oryza sativa Japonica Group]
gi|113595420|dbj|BAF19294.1| Os06g0275600 [Oryza sativa Japonica Group]
Length = 437
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 71/107 (66%), Gaps = 9/107 (8%)
Query: 245 AQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
A PK+ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEI
Sbjct: 250 AGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEI 309
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
I+YV+ LQ QV+ LSM A+V P + D + E D Q G
Sbjct: 310 INYVQSLQRQVEFLSMK----LASVNPTL-DFNIERILSKDIFQCRG 351
>gi|323388959|gb|ADX60284.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 437
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 71/107 (66%), Gaps = 9/107 (8%)
Query: 245 AQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
A PK+ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEI
Sbjct: 250 AGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEI 309
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
I+YV+ LQ QV+ LSM A+V P + D + E D Q G
Sbjct: 310 INYVQSLQRQVEFLSMK----LASVNPTL-DFNIERILSKDIFQCRG 351
>gi|218195917|gb|EEC78344.1| hypothetical protein OsI_18091 [Oryza sativa Indica Group]
Length = 339
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
Query: 238 GGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASM 296
GG PA VRARRGQATD HS+AER+RRE+I+ERMK LQ LVP +K T KA M
Sbjct: 168 AAGGEPPAGY--IHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALM 225
Query: 297 LDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADM 332
LDEII YV+ LQ QV+ LSM A++ PL+ +
Sbjct: 226 LDEIISYVQSLQNQVEFLSMK----LASLNPLMYEF 257
>gi|242079823|ref|XP_002444680.1| hypothetical protein SORBIDRAFT_07g025920 [Sorghum bicolor]
gi|241941030|gb|EES14175.1| hypothetical protein SORBIDRAFT_07g025920 [Sorghum bicolor]
Length = 293
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 67/97 (69%), Gaps = 5/97 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+YV+ LQ Q
Sbjct: 122 VRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQ 181
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
V+ LSM A+++P++ + G D Q G
Sbjct: 182 VEFLSMR----IASMSPVLYGFGLDSDGLHDHAQKMG 214
>gi|168023966|ref|XP_001764508.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684372|gb|EDQ70775.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 679
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP K T KA MLDEII+YV+ LQ Q
Sbjct: 388 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCRKVTGKAVMLDEIINYVQSLQRQ 447
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 448 VESLSM 453
>gi|79340401|ref|NP_172483.4| transcription factor bHLH74 [Arabidopsis thaliana]
gi|75291341|sp|Q6NKN9.1|BH074_ARATH RecName: Full=Transcription factor bHLH74; AltName: Full=Basic
helix-loop-helix protein 74; Short=AtbHLH74; Short=bHLH
74; AltName: Full=Transcription factor EN 90; AltName:
Full=bHLH transcription factor bHLH074
gi|46931340|gb|AAT06474.1| At1g10120 [Arabidopsis thaliana]
gi|62320956|dbj|BAD93978.1| bHLH transcription factor like protein [Arabidopsis thaliana]
gi|332190423|gb|AEE28544.1| transcription factor bHLH74 [Arabidopsis thaliana]
Length = 366
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 206 MRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQ 265
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRN 349
V+ LSM A V P + ++ + D +Q+ RN
Sbjct: 266 VEFLSMK----LATVNPEI-NIDIDRILAKDLLQSRDRN 299
>gi|297802298|ref|XP_002869033.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297314869|gb|EFH45292.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 304
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
++T++ G T ++ Q+P VRARRG+ATD HS+AER RRE+I+++MK LQ
Sbjct: 112 DETESSMKGKTNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQ 171
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 172 DIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSM 206
>gi|414589882|tpg|DAA40453.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 329
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 4/77 (5%)
Query: 244 PAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDE 299
PA +P + VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK KA MLDE
Sbjct: 145 PAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVGKALMLDE 204
Query: 300 IIDYVKFLQLQVKVLSM 316
II+YV+ LQ QV+ LSM
Sbjct: 205 IINYVQSLQQQVEFLSM 221
>gi|168000495|ref|XP_001752951.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695650|gb|EDQ81992.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 119
Score = 94.0 bits (232), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 64/85 (75%), Gaps = 8/85 (9%)
Query: 247 QPKQR---VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIID 302
PKQ VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP+ +K T KA MLDEII+
Sbjct: 17 HPKQHYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPSCSKVTGKAVMLDEIIN 76
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAP 327
YV+ LQ Q++ LSM AAV P
Sbjct: 77 YVQSLQRQIEFLSMK----LAAVDP 97
>gi|238009798|gb|ACR35934.1| unknown [Zea mays]
Length = 287
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 68/87 (78%), Gaps = 7/87 (8%)
Query: 246 QQPK--QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIID 302
++PK VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+
Sbjct: 103 EEPKGYIHVRARRGQATDNHSLAERVRRERISERMRVLQALVPGCDKVTGKALILDEIIN 162
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAPLV 329
YV+ LQ QV+ LSM R+ A+++P++
Sbjct: 163 YVQSLQNQVEFLSM-RI---ASLSPVL 185
>gi|242049812|ref|XP_002462650.1| hypothetical protein SORBIDRAFT_02g029530 [Sorghum bicolor]
gi|241926027|gb|EER99171.1| hypothetical protein SORBIDRAFT_02g029530 [Sorghum bicolor]
Length = 281
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 7/87 (8%)
Query: 246 QQPK--QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIID 302
++PK VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+
Sbjct: 101 EEPKGYIHVRARRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALILDEIIN 160
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAPLV 329
YV+ LQ QV+ LSM A+++P++
Sbjct: 161 YVQSLQNQVEFLSMR----IASLSPVL 183
>gi|255540845|ref|XP_002511487.1| DNA binding protein, putative [Ricinus communis]
gi|223550602|gb|EEF52089.1| DNA binding protein, putative [Ricinus communis]
Length = 275
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 7/84 (8%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
P +Q VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+
Sbjct: 138 PPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIIN 197
Query: 303 YVKFLQLQVKVLSM------SRLG 320
Y++ LQ QV+ LSM SR+G
Sbjct: 198 YIQSLQRQVEFLSMKLEAVNSRMG 221
>gi|339778403|gb|AEK06083.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
Length = 589
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 55/63 (87%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++RG+A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 317 SKRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 376
Query: 314 LSM 316
+SM
Sbjct: 377 MSM 379
>gi|339778389|gb|AEK06076.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
Length = 589
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 55/63 (87%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++RG+A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 317 SKRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 376
Query: 314 LSM 316
+SM
Sbjct: 377 MSM 379
>gi|357161826|ref|XP_003579215.1| PREDICTED: transcription factor bHLH139-like [Brachypodium
distachyon]
Length = 301
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 55/79 (69%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
PK + RA RG +TDP S+ R RRERI ER+K LQ LVPN K D ++ML+E + YVKFL
Sbjct: 211 PKGKARAARGASTDPQSLYARKRRERINERLKTLQTLVPNGTKVDMSTMLEEAVHYVKFL 270
Query: 308 QLQVKVLSMSRLGGAAAVA 326
QLQ+KVLS + A +A
Sbjct: 271 QLQIKVLSSDDMWMYAPLA 289
>gi|339778391|gb|AEK06077.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778393|gb|AEK06078.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778395|gb|AEK06079.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778399|gb|AEK06081.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778401|gb|AEK06082.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778405|gb|AEK06084.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778407|gb|AEK06085.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778409|gb|AEK06086.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778411|gb|AEK06087.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778413|gb|AEK06088.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778415|gb|AEK06089.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778417|gb|AEK06090.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778419|gb|AEK06091.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778421|gb|AEK06092.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778423|gb|AEK06093.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778425|gb|AEK06094.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778427|gb|AEK06095.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778429|gb|AEK06096.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
Length = 589
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 55/63 (87%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++RG+A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 317 SKRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 376
Query: 314 LSM 316
+SM
Sbjct: 377 MSM 379
>gi|212721642|ref|NP_001131806.1| uncharacterized protein LOC100193179 [Zea mays]
gi|194692596|gb|ACF80382.1| unknown [Zea mays]
gi|414869722|tpg|DAA48279.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 315
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 67/97 (69%), Gaps = 5/97 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+YV+ LQ Q
Sbjct: 139 VRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQ 198
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
V+ LSM A+++P++ + G D Q G
Sbjct: 199 VEFLSMR----IASMSPVLYGFGLDSDGLHDHAQKMG 231
>gi|242033101|ref|XP_002463945.1| hypothetical protein SORBIDRAFT_01g009380 [Sorghum bicolor]
gi|241917799|gb|EER90943.1| hypothetical protein SORBIDRAFT_01g009380 [Sorghum bicolor]
Length = 315
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRA+RGQAT+ HS+AERLRR++I+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 138 VRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCNKITGKAVMLDEIINYVQSLQRQ 197
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 198 VEFLSM 203
>gi|326519344|dbj|BAJ96671.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 279
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 62/79 (78%), Gaps = 5/79 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS++ER+RRERI+ERM+ LQ LVP +K T KA +LDEII+YV+ LQ Q
Sbjct: 105 VRARRGQATDSHSLSERVRRERISERMRMLQSLVPGCDKVTGKALILDEIINYVRSLQNQ 164
Query: 311 VKVLSMSRLGGAAAVAPLV 329
V+ LSM A+++P+V
Sbjct: 165 VEFLSMR----IASLSPVV 179
>gi|339778397|gb|AEK06080.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
Length = 589
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 55/63 (87%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++RG+A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 317 SKRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 376
Query: 314 LSM 316
+SM
Sbjct: 377 MSM 379
>gi|115456009|ref|NP_001051605.1| Os03g0802900 [Oryza sativa Japonica Group]
gi|29150361|gb|AAO72370.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711612|gb|ABF99407.1| bHLH transcription factor, putative, expressed [Oryza sativa
Japonica Group]
gi|113550076|dbj|BAF13519.1| Os03g0802900 [Oryza sativa Japonica Group]
Length = 265
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KAS+LDEII+Y++ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQ 195
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 196 VEFLSM 201
>gi|356575289|ref|XP_003555774.1| PREDICTED: transcription factor PIF3-like [Glycine max]
Length = 633
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 12/92 (13%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQEL 284
+ A A + GG GG G ++R +A + H+++ER RR+RI E+M+ALQEL
Sbjct: 350 EESAGAKKTAGGQGGAG------------SKRSRAAEVHNLSERRRRDRINEKMRALQEL 397
Query: 285 VPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
+PN NK DKASMLDE I+Y+K LQLQV+++SM
Sbjct: 398 IPNCNKVDKASMLDEAIEYLKTLQLQVQIMSM 429
>gi|238005608|gb|ACR33839.1| unknown [Zea mays]
gi|413938469|gb|AFW73020.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 246
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 54/63 (85%), Gaps = 1/63 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQELVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 146 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIINYVQSLQKQ 205
Query: 311 VKV 313
V+V
Sbjct: 206 VEV 208
>gi|108707005|gb|ABF94800.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 809
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q + S G G +++ VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP
Sbjct: 603 QRELSMEHAGEKAGDADASREEYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 662
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 663 GCNKITGKAMMLDEIINYVQSLQRQVEFLSM 693
>gi|323388909|gb|ADX60259.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 265
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KAS+LDEII+Y++ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQ 195
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 196 VEFLSM 201
>gi|125588289|gb|EAZ28953.1| hypothetical protein OsJ_12999 [Oryza sativa Japonica Group]
Length = 224
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQEL 284
+T ++ + +G P +Q VRARRGQATD HS+AER RRE+I+ERMK LQ+L
Sbjct: 68 ETDSRNASKSGDQNPPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDL 127
Query: 285 VPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
VP NK KAS+LDEII+Y++ LQ QV+ LSM
Sbjct: 128 VPGCNKVIGKASVLDEIINYIQALQRQVEFLSM 160
>gi|108707003|gb|ABF94798.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 810
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q + S G G +++ VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP
Sbjct: 603 QRELSMEHAGEKAGDADASREEYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 662
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 663 GCNKITGKAMMLDEIINYVQSLQRQVEFLSM 693
>gi|357148647|ref|XP_003574844.1| PREDICTED: transcription factor bHLH137-like [Brachypodium
distachyon]
Length = 294
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+YV+ LQ Q
Sbjct: 125 VRARRGQATDSHSLAERVRRERISERMRLLQTLVPGCDKVTGKALILDEIINYVQSLQNQ 184
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 185 VEFLSM 190
>gi|339778387|gb|AEK06075.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
Length = 589
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 55/63 (87%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++RG+A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 317 SKRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 376
Query: 314 LSM 316
+SM
Sbjct: 377 MSM 379
>gi|222635385|gb|EEE65517.1| hypothetical protein OsJ_20959 [Oryza sativa Japonica Group]
Length = 545
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 71/107 (66%), Gaps = 9/107 (8%)
Query: 245 AQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
A PK+ VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEI
Sbjct: 358 AGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEI 417
Query: 301 IDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
I+YV+ LQ QV+ LSM A+V P + D + E D Q G
Sbjct: 418 INYVQSLQRQVEFLSMK----LASVNPTL-DFNIERILSKDIFQCRG 459
>gi|125546085|gb|EAY92224.1| hypothetical protein OsI_13945 [Oryza sativa Indica Group]
Length = 263
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQEL 284
+T ++ + +G P +Q VRARRGQATD HS+AER RRE+I+ERMK LQ+L
Sbjct: 107 ETDSRNASKSGDQNPPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDL 166
Query: 285 VPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
VP NK KAS+LDEII+Y++ LQ QV+ LSM
Sbjct: 167 VPGCNKVIGKASVLDEIINYIQALQRQVEFLSM 199
>gi|356534971|ref|XP_003536024.1| PREDICTED: transcription factor PIF3-like [Glycine max]
Length = 665
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 64/94 (68%), Gaps = 12/94 (12%)
Query: 223 MNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQ 282
+ + A A + GG GG G ++R +A + H+++ER RR+RI E+M+ALQ
Sbjct: 412 VEEESAGAKKTAGGRGGAG------------SKRSRAAEVHNLSERKRRDRINEKMRALQ 459
Query: 283 ELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
EL+PN NK DKASMLDE I+Y+K LQLQV+++SM
Sbjct: 460 ELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSM 493
>gi|168024189|ref|XP_001764619.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684197|gb|EDQ70601.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 80/139 (57%), Gaps = 13/139 (9%)
Query: 235 GGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK- 290
G G Q PKQ VRARRGQATD HS+AER RRE+I+ RMK LQ LVP ++
Sbjct: 130 GHSGKKVKKKEQPPKQGFIHVRARRGQATDGHSLAERARREKISNRMKFLQALVPGCSEV 189
Query: 291 TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNP 350
T KA ML+EII+YVK LQ Q++ LSM AAV P V D + EG + G+N
Sbjct: 190 TGKAVMLEEIINYVKSLQRQIEFLSMK----LAAVDPRV-DTNVEGLLKMEAEHWTGKNA 244
Query: 351 NGAQTTSANDSLTVTEHQV 369
SA SL ++QV
Sbjct: 245 R----CSAVQSLHTMQYQV 259
>gi|27311243|gb|AAO00689.1| Hypothetical protein [Oryza sativa Japonica Group]
Length = 776
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q + S G G +++ VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP
Sbjct: 603 QRELSMEHAGEKAGDADASREEYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 662
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 663 GCNKITGKAMMLDEIINYVQSLQRQVEFLSM 693
>gi|414589881|tpg|DAA40452.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 312
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 4/77 (5%)
Query: 244 PAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDE 299
PA +P + VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK KA MLDE
Sbjct: 145 PAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVGKALMLDE 204
Query: 300 IIDYVKFLQLQVKVLSM 316
II+YV+ LQ QV+ LSM
Sbjct: 205 IINYVQSLQQQVEFLSM 221
>gi|293332473|ref|NP_001169219.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
gi|223975629|gb|ACN32002.1| unknown [Zea mays]
gi|414589883|tpg|DAA40454.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 350
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 4/77 (5%)
Query: 244 PAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDE 299
PA +P + VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK KA MLDE
Sbjct: 145 PAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVGKALMLDE 204
Query: 300 IIDYVKFLQLQVKVLSM 316
II+YV+ LQ QV+ LSM
Sbjct: 205 IINYVQSLQQQVEFLSM 221
>gi|224137946|ref|XP_002322691.1| predicted protein [Populus trichocarpa]
gi|222867321|gb|EEF04452.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 62/83 (74%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKF 306
P VRARRGQATD HS+AER RRE+I +RMK LQELVP NK A +LDEII++V+F
Sbjct: 178 PYVHVRARRGQATDSHSLAERARREKINQRMKLLQELVPGCNKISGTALVLDEIINHVQF 237
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ QV++LSM RL AAV P +
Sbjct: 238 LQRQVEILSM-RL---AAVNPRI 256
>gi|219363691|ref|NP_001136513.1| uncharacterized protein LOC100216628 [Zea mays]
gi|194695994|gb|ACF82081.1| unknown [Zea mays]
Length = 314
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 4/77 (5%)
Query: 244 PAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDE 299
PA +P + VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK KA MLDE
Sbjct: 147 PAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVGKALMLDE 206
Query: 300 IIDYVKFLQLQVKVLSM 316
II+YV+ LQ QV+ LSM
Sbjct: 207 IINYVQSLQQQVEFLSM 223
>gi|225424835|ref|XP_002272776.1| PREDICTED: transcription factor BPE-like [Vitis vinifera]
Length = 277
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
P +Q VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+
Sbjct: 143 PPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIIN 202
Query: 303 YVKFLQLQVKVLSM 316
Y++ LQ QV+ LSM
Sbjct: 203 YIQSLQRQVEFLSM 216
>gi|326528369|dbj|BAJ93366.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 488
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 62/82 (75%), Gaps = 3/82 (3%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P++ ARR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K L
Sbjct: 305 PQKLTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKTL 364
Query: 308 QLQVKVLSMSRLGGAAAVAPLV 329
Q+QV+++ M GG A P V
Sbjct: 365 QMQVQMMWM---GGGMAAPPAV 383
>gi|218197962|gb|EEC80389.1| hypothetical protein OsI_22515 [Oryza sativa Indica Group]
Length = 494
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 67/97 (69%), Gaps = 6/97 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 317 VRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 376
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
V+ LSM A+V P + D + E D Q G
Sbjct: 377 VEFLSMK----LASVNPTL-DFNIERILSKDIFQCRG 408
>gi|414589941|tpg|DAA40512.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 295
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 7/87 (8%)
Query: 246 QQPK--QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIID 302
++PK VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+
Sbjct: 103 EEPKGYIHVRARRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALVLDEIIN 162
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAPLV 329
YV+ LQ QV+ LSM A+++P++
Sbjct: 163 YVQSLQNQVEFLSMK----IASLSPVL 185
>gi|356526880|ref|XP_003532044.1| PREDICTED: transcription factor BPE-like [Glycine max]
Length = 273
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
P +Q VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+
Sbjct: 138 PPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIIN 197
Query: 303 YVKFLQLQVKVLSM 316
Y++ LQ QV+ LSM
Sbjct: 198 YIQSLQRQVEFLSM 211
>gi|224133354|ref|XP_002321546.1| predicted protein [Populus trichocarpa]
gi|222868542|gb|EEF05673.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 59/77 (76%), Gaps = 4/77 (5%)
Query: 244 PAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDE 299
P++ PKQ VRARRGQATD HS+AER RRE+I+ERM LQ+LVP NK KA +LDE
Sbjct: 73 PSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMNMLQDLVPGCNKVIGKALVLDE 132
Query: 300 IIDYVKFLQLQVKVLSM 316
II+Y++ LQ QV+ LSM
Sbjct: 133 IINYIQSLQCQVEFLSM 149
>gi|212721128|ref|NP_001132785.1| uncharacterized protein LOC100194274 [Zea mays]
gi|194695392|gb|ACF81780.1| unknown [Zea mays]
gi|414589942|tpg|DAA40513.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 305
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Query: 246 QQPK--QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIID 302
++PK VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+
Sbjct: 113 EEPKGYIHVRARRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALVLDEIIN 172
Query: 303 YVKFLQLQVKVLSM 316
YV+ LQ QV+ LSM
Sbjct: 173 YVQSLQNQVEFLSM 186
>gi|414887375|tpg|DAA63389.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 472
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 62/100 (62%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q+ S ++ G GNT + K RA RG ATDP S+ R RRERI ER++ LQ LVP
Sbjct: 171 QSSGSCTSEEGNFEGNTYSSAKKTCTRASRGGATDPQSLYARKRRERINERLRILQNLVP 230
Query: 287 NANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
N K D ++ML+E YVKFLQLQ+K+LS + A +A
Sbjct: 231 NGTKVDISTMLEEAAQYVKFLQLQIKLLSSDDMWMYAPIA 270
>gi|223702406|gb|ACN21634.1| putative basic helix-loop-helix protein BHLH10 [Lotus japonicus]
Length = 338
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 6/119 (5%)
Query: 214 QTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQP------KQRVRARRGQATDPHSIAE 267
+ G G ++ ++ S GGG ++ Q+ K + R+ RG ATDP SI
Sbjct: 202 RNLGLHGQSLSSCCSEDDDSNELNGGGSSSLDQKDSTTIKLKGKSRSERGSATDPQSIYA 261
Query: 268 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
R RRE+I ER+K LQ LVPN K D ++ML+E + YVKFLQLQ+K+LS L A +A
Sbjct: 262 RRRREKINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIA 320
>gi|223702428|gb|ACN21645.1| putative basic helix-loop-helix protein BHLH8 [Lotus japonicus]
Length = 309
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 64/83 (77%), Gaps = 5/83 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERM LQ+LVP +K T KA +L+EII+YV+ LQ Q
Sbjct: 119 VRARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQ 178
Query: 311 VKVLSMSRLGGAAAVAPLVADMS 333
V+ LSM A+V P++ DM+
Sbjct: 179 VEFLSM----KLASVNPMLFDMA 197
>gi|326514032|dbj|BAJ92166.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 316
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 8/93 (8%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQEL 284
+TQ++ S G G ++ +RA+RGQAT+ HS+AERLRR++I+ERMK LQ+L
Sbjct: 118 KTQSKEDSSDGDG-------TKENYVHLRAKRGQATNSHSLAERLRRKKISERMKLLQDL 170
Query: 285 VPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 171 VPGCNKITGKAVMLDEIINYVQSLQRQVEFLSM 203
>gi|226496555|ref|NP_001150926.1| bHLH transcription factor GBOF-1 [Zea mays]
gi|195642998|gb|ACG40967.1| bHLH transcription factor GBOF-1 [Zea mays]
Length = 306
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 7/87 (8%)
Query: 246 QQPK--QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIID 302
++PK VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+
Sbjct: 112 EEPKGYIHVRARRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALVLDEIIN 171
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAPLV 329
YV+ LQ QV+ LSM A+++P++
Sbjct: 172 YVQSLQNQVEFLSMK----IASLSPVL 194
>gi|302798757|ref|XP_002981138.1| hypothetical protein SELMODRAFT_114141 [Selaginella moellendorffii]
gi|300151192|gb|EFJ17839.1| hypothetical protein SELMODRAFT_114141 [Selaginella moellendorffii]
Length = 85
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 57/68 (83%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P R ++R +A + H+++ER RR+RI E+MKALQEL+PN+NKTDKASMLDE I+Y+K L
Sbjct: 10 PPARTSSKRSRAAEVHNLSERRRRDRINEKMKALQELIPNSNKTDKASMLDEAIEYLKML 69
Query: 308 QLQVKVLS 315
QLQ++VLS
Sbjct: 70 QLQLQVLS 77
>gi|334184293|ref|NP_001189548.1| transcription factor bHLH64 [Arabidopsis thaliana]
gi|330251660|gb|AEC06754.1| transcription factor bHLH64 [Arabidopsis thaliana]
Length = 364
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 66/109 (60%), Gaps = 17/109 (15%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQR----------------VRARRGQATDPHSIAER 268
+ +A+ S G GNT A + VRARRGQATD HS+AER
Sbjct: 142 KVEAETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAER 201
Query: 269 LRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
RRE+I+++MK LQ++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 202 ARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSM 250
>gi|147774847|emb|CAN69076.1| hypothetical protein VITISV_004761 [Vitis vinifera]
Length = 302
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
P +Q VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+
Sbjct: 143 PPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIIN 202
Query: 303 YVKFLQLQVKVLSM 316
Y++ LQ QV+ LSM
Sbjct: 203 YIQSLQRQVEFLSM 216
>gi|224107851|ref|XP_002314625.1| predicted protein [Populus trichocarpa]
gi|222863665|gb|EEF00796.1| predicted protein [Populus trichocarpa]
Length = 200
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
P++Q VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+
Sbjct: 66 PSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIIN 125
Query: 303 YVKFLQLQVKVLSM 316
Y++ LQ QV+ LSM
Sbjct: 126 YIQSLQRQVEFLSM 139
>gi|414869721|tpg|DAA48278.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 314
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 5/94 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+YV+ LQ Q
Sbjct: 139 VRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQ 198
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQ 344
V+ LSM A+++P++ + G D Q
Sbjct: 199 VEFLSMR----IASMSPVLYGFGLDSDGLHDHAQ 228
>gi|356562791|ref|XP_003549652.1| PREDICTED: transcription factor bHLH79-like [Glycine max]
Length = 229
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 58/75 (77%), Gaps = 4/75 (5%)
Query: 246 QQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEII 301
Q PKQ VRARRGQATD HS+AER RRE+I+ERMK LQ++VP NK KA +LDEII
Sbjct: 91 QPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEII 150
Query: 302 DYVKFLQLQVKVLSM 316
+Y++ LQ QV+ LSM
Sbjct: 151 NYIQSLQHQVEFLSM 165
>gi|308080104|ref|NP_001183737.1| uncharacterized protein LOC100502330 [Zea mays]
gi|238014262|gb|ACR38166.1| unknown [Zea mays]
gi|413921691|gb|AFW61623.1| putative HLH DNA-binding domain superfamily protein isoform 1 [Zea
mays]
gi|413921692|gb|AFW61624.1| putative HLH DNA-binding domain superfamily protein isoform 2 [Zea
mays]
Length = 319
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+YV+ LQ Q
Sbjct: 131 VRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKAMVLDEIINYVQSLQNQ 190
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 191 VEFLSM 196
>gi|30680338|ref|NP_849976.1| transcription factor bHLH64 [Arabidopsis thaliana]
gi|218563534|sp|Q9ZPW3.3|BH064_ARATH RecName: Full=Transcription factor bHLH64; AltName: Full=Basic
helix-loop-helix protein 64; Short=AtbHLH64; Short=bHLH
64; AltName: Full=Transcription factor EN 79; AltName:
Full=bHLH transcription factor bHLH064
gi|330251659|gb|AEC06753.1| transcription factor bHLH64 [Arabidopsis thaliana]
Length = 337
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 66/109 (60%), Gaps = 17/109 (15%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQR----------------VRARRGQATDPHSIAER 268
+ +A+ S G GNT A + VRARRGQATD HS+AER
Sbjct: 142 KVEAETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAER 201
Query: 269 LRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
RRE+I+++MK LQ++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 202 ARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSM 250
>gi|115480081|ref|NP_001063634.1| Os09g0510500 [Oryza sativa Japonica Group]
gi|113631867|dbj|BAF25548.1| Os09g0510500 [Oryza sativa Japonica Group]
gi|125606291|gb|EAZ45327.1| hypothetical protein OsJ_29973 [Oryza sativa Japonica Group]
gi|215694666|dbj|BAG89857.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 282
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 62/79 (78%), Gaps = 5/79 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+YV+ LQ Q
Sbjct: 107 VRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQ 166
Query: 311 VKVLSMSRLGGAAAVAPLV 329
V+ LSM A+++P++
Sbjct: 167 VEFLSMR----IASLSPVL 181
>gi|18398703|ref|NP_565434.1| transcription factor bHLH64 [Arabidopsis thaliana]
gi|15724318|gb|AAL06552.1|AF412099_1 At2g18300/T30D6.19 [Arabidopsis thaliana]
gi|18700242|gb|AAL77731.1| At2g18300/T30D6.19 [Arabidopsis thaliana]
gi|20197806|gb|AAD15506.2| expressed protein [Arabidopsis thaliana]
gi|330251658|gb|AEC06752.1| transcription factor bHLH64 [Arabidopsis thaliana]
Length = 335
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 66/109 (60%), Gaps = 17/109 (15%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQR----------------VRARRGQATDPHSIAER 268
+ +A+ S G GNT A + VRARRGQATD HS+AER
Sbjct: 142 KVEAETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAER 201
Query: 269 LRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
RRE+I+++MK LQ++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 202 ARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSM 250
>gi|168050670|ref|XP_001777781.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670882|gb|EDQ57443.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 67
Score = 92.8 bits (229), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/62 (72%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP K T KA MLDEII+YV+FLQ Q
Sbjct: 6 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCKKVTGKAVMLDEIINYVQFLQRQ 65
Query: 311 VK 312
V+
Sbjct: 66 VE 67
>gi|357118625|ref|XP_003561052.1| PREDICTED: uncharacterized protein LOC100821164 [Brachypodium
distachyon]
Length = 331
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 88/152 (57%), Gaps = 23/152 (15%)
Query: 232 GSTGGG-----GGGGNTPAQQPKQRVR----ARRGQATDPHSIAERLRRERIAERMKALQ 282
G GGG GG + P +R R ++R +A + H+++E+ RR RI E+MKALQ
Sbjct: 71 GELGGGFYESEAGGSSEPEPHSSERPRGGSGSKRTRAAEVHNLSEKRRRSRINEKMKALQ 130
Query: 283 ELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM--------SRLGGAAAVAPLVAD--M 332
L+PN+NKTDKASMLDE I+Y+K LQLQV++LSM S L G A+ P+ A
Sbjct: 131 SLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGVYLNPSYLSG--ALEPMQASQMF 188
Query: 333 SSEGGGGGDCIQAN--GRNPNGAQTTSANDSL 362
++ G GG + AN G P Q T A+ S
Sbjct: 189 AALGVGGRNVTAANPGGVVPPVNQNTGAHHSF 220
>gi|115477012|ref|NP_001062102.1| Os08g0487700 [Oryza sativa Japonica Group]
gi|42408258|dbj|BAD09414.1| bHLH transcription factor-like [Oryza sativa Japonica Group]
gi|113624071|dbj|BAF24016.1| Os08g0487700 [Oryza sativa Japonica Group]
gi|125561978|gb|EAZ07426.1| hypothetical protein OsI_29678 [Oryza sativa Indica Group]
gi|125603820|gb|EAZ43145.1| hypothetical protein OsJ_27735 [Oryza sativa Japonica Group]
Length = 365
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRAR+GQAT+ HS+AERLRRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 176 VRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSLQRQ 235
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 236 VEFLSM 241
>gi|302801726|ref|XP_002982619.1| hypothetical protein SELMODRAFT_116654 [Selaginella moellendorffii]
gi|300149718|gb|EFJ16372.1| hypothetical protein SELMODRAFT_116654 [Selaginella moellendorffii]
Length = 85
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 57/68 (83%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P R ++R +A + H+++ER RR+RI E+MKALQEL+PN+NKTDKASMLDE I+Y+K L
Sbjct: 10 PPARTSSKRSRAAEVHNLSERRRRDRINEKMKALQELIPNSNKTDKASMLDEAIEYLKML 69
Query: 308 QLQVKVLS 315
QLQ++VLS
Sbjct: 70 QLQLQVLS 77
>gi|296086467|emb|CBI32056.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
P +Q VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+
Sbjct: 74 PPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIIN 133
Query: 303 YVKFLQLQVKVLSM 316
Y++ LQ QV+ LSM
Sbjct: 134 YIQSLQRQVEFLSM 147
>gi|125562347|gb|EAZ07795.1| hypothetical protein OsI_30053 [Oryza sativa Indica Group]
gi|125604159|gb|EAZ43484.1| hypothetical protein OsJ_28098 [Oryza sativa Japonica Group]
Length = 291
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+YV+ LQ Q
Sbjct: 123 VRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQ 182
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGD 341
V+ LSM A+++P++ + G D
Sbjct: 183 VEFLSMR----IASMSPVLYGFGMDSDGLHD 209
>gi|449437607|ref|XP_004136583.1| PREDICTED: transcription factor bHLH60-like [Cucumis sativus]
gi|449501894|ref|XP_004161487.1| PREDICTED: transcription factor bHLH60-like [Cucumis sativus]
Length = 369
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 69/107 (64%), Gaps = 6/107 (5%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQ-PKQRVRARRGQATDPHSIAERLRRERIAERMKALQE 283
+ + + GST N A++ P VRARRGQATD HS+AER RRE+I RMK LQE
Sbjct: 173 EREKKGRGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQE 232
Query: 284 LVPNANKTD-KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
LVP NK A +LDEII++V+ LQ QV+ LSM RL AAV P V
Sbjct: 233 LVPGCNKISGTALVLDEIINHVQSLQRQVEFLSM-RL---AAVNPRV 275
>gi|20127093|gb|AAM10959.1|AF488616_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 352
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
Query: 236 GGGGGGNTPAQQPKQ------RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN 289
GGG ++ P + + RA RG ATDP S+ R RRERI ER++ LQ LVPN
Sbjct: 244 GGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGT 303
Query: 290 KTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
K D ++ML+E + YVKFLQLQ+K+LS L A +A
Sbjct: 304 KVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIA 340
>gi|20127068|gb|AAM10953.1|AF488597_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 320
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 66/109 (60%), Gaps = 17/109 (15%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQR----------------VRARRGQATDPHSIAER 268
+ +A+ S G GNT A + VRARRGQATD HS+AER
Sbjct: 125 KVEAETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAER 184
Query: 269 LRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
RRE+I+++MK LQ++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 185 ARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSM 233
>gi|357516593|ref|XP_003628585.1| Transcription factor bHLH79 [Medicago truncatula]
gi|355522607|gb|AET03061.1| Transcription factor bHLH79 [Medicago truncatula]
Length = 278
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 211 VEFLSM 216
>gi|312283223|dbj|BAJ34477.1| unnamed protein product [Thellungiella halophila]
Length = 342
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
N +AS T G + +Q+ VRARRGQATD HS+AER RRE+I+++MK LQ
Sbjct: 158 NMGNTEASSDTSKEISKGASESQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 217
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
+LVP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 218 DLVPGCNKVTGKAGMLDEIINYVQSLQRQVEFLSM 252
>gi|3297812|emb|CAA19870.1| putative protein [Arabidopsis thaliana]
gi|7270337|emb|CAB80105.1| putative protein [Arabidopsis thaliana]
Length = 349
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
Query: 236 GGGGGGNTPAQQPKQ------RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN 289
GGG ++ P + + RA RG ATDP S+ R RRERI ER++ LQ LVPN
Sbjct: 241 GGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGT 300
Query: 290 KTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
K D ++ML+E + YVKFLQLQ+K+LS L A +A
Sbjct: 301 KVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIA 337
>gi|297843798|ref|XP_002889780.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335622|gb|EFH66039.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 140
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 4/76 (5%)
Query: 246 QQPKQR---VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEII 301
++PK++ +RARRGQAT+ HS+AER+RRE+I+ERM+ LQELVP NK T KA MLDEII
Sbjct: 39 EEPKEKYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAFMLDEII 98
Query: 302 DYVKFLQLQVKVLSMS 317
+Y++ LQ QV+ LSM
Sbjct: 99 NYIQSLQQQVEFLSMK 114
>gi|30689839|ref|NP_195114.2| transcription factor bHLH85 [Arabidopsis thaliana]
gi|75298259|sp|Q84WK0.1|BH085_ARATH RecName: Full=Transcription factor bHLH85; AltName: Full=Basic
helix-loop-helix protein 85; Short=AtbHLH85; Short=bHLH
85; AltName: Full=Transcription factor EN 115; AltName:
Full=bHLH transcription factor bHLH085
gi|27808578|gb|AAO24569.1| At4g33880 [Arabidopsis thaliana]
gi|110736194|dbj|BAF00068.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|332660887|gb|AEE86287.1| transcription factor bHLH85 [Arabidopsis thaliana]
Length = 352
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
Query: 236 GGGGGGNTPAQQPKQ------RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN 289
GGG ++ P + + RA RG ATDP S+ R RRERI ER++ LQ LVPN
Sbjct: 244 GGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGT 303
Query: 290 KTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
K D ++ML+E + YVKFLQLQ+K+LS L A +A
Sbjct: 304 KVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIA 340
>gi|242082417|ref|XP_002445977.1| hypothetical protein SORBIDRAFT_07g028945 [Sorghum bicolor]
gi|241942327|gb|EES15472.1| hypothetical protein SORBIDRAFT_07g028945 [Sorghum bicolor]
Length = 343
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRAR+GQAT+ HS+AERLRRE+I+ERMK LQ+LVP K T KA MLDEII+YV+ LQ Q
Sbjct: 174 VRARKGQATNRHSLAERLRREKISERMKLLQDLVPGCTKVTGKAVMLDEIINYVQSLQRQ 233
Query: 311 VKVLSMSRLGGAAAVAP 327
V+ LSM AAV P
Sbjct: 234 VEFLSMK----LAAVNP 246
>gi|242047764|ref|XP_002461628.1| hypothetical protein SORBIDRAFT_02g005713 [Sorghum bicolor]
gi|241925005|gb|EER98149.1| hypothetical protein SORBIDRAFT_02g005713 [Sorghum bicolor]
Length = 178
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ++VP NK KAS+LDEII+Y++ LQ Q
Sbjct: 50 VRARRGQATDSHSLAERARREKISERMKVLQDIVPGCNKVIGKASVLDEIINYIQSLQRQ 109
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 110 VEFLSM 115
>gi|414591902|tpg|DAA42473.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 251
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ++VP NK KAS+LDEII+Y++ LQ Q
Sbjct: 123 VRARRGQATDSHSLAERARREKISERMKVLQDIVPGCNKVIGKASVLDEIINYIQSLQRQ 182
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 183 VEFLSM 188
>gi|125578091|gb|EAZ19313.1| hypothetical protein OsJ_34859 [Oryza sativa Japonica Group]
Length = 311
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 66/108 (61%), Gaps = 21/108 (19%)
Query: 230 ASGSTGGGGGGG----NTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQE 283
+G G GG G + + PK VRARRGQATD HS+AER+RRE+I+ERMK LQ+
Sbjct: 117 VAGDAGHGGNGKGKVLDAAGEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQD 176
Query: 284 LVPNANK---------------TDKASMLDEIIDYVKFLQLQVKVLSM 316
LVP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 177 LVPGCNKVAKFSQKINLNFTLVTGKAVMLDEIINYVQSLQRQVEFLSM 224
>gi|326492944|dbj|BAJ90328.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 209
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 62/82 (75%), Gaps = 3/82 (3%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P++ ARR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K L
Sbjct: 26 PQKLTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKTL 85
Query: 308 QLQVKVLSMSRLGGAAAVAPLV 329
Q+QV+++ M GG A P V
Sbjct: 86 QMQVQMMWM---GGGMAAPPAV 104
>gi|414865637|tpg|DAA44194.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 289
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q + S G ++ VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP
Sbjct: 99 QREVSMECADEKAGDARAKREDYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 158
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ Q++ LSM
Sbjct: 159 GCNKITGKAMMLDEIINYVQSLQRQIEFLSM 189
>gi|110741191|dbj|BAF02146.1| bHLH transcription factor like protein [Arabidopsis thaliana]
Length = 366
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 68/99 (68%), Gaps = 6/99 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RARRGQAT+ HS+AER+RRE+I+ERM+ LQEL P NK T KA MLDEII+YV+ LQ Q
Sbjct: 206 MRARRGQATNSHSLAERVRREKISERMRLLQELAPGCNKITGKAVMLDEIINYVQSLQQQ 265
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRN 349
V+ LSM A V P + ++ + D +Q+ RN
Sbjct: 266 VEFLSMK----LATVNPEI-NIDIDRILAKDLLQSRDRN 299
>gi|357115005|ref|XP_003559284.1| PREDICTED: transcription factor bHLH79-like [Brachypodium
distachyon]
Length = 243
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I ERMK LQ+LVP NK KAS+LDEII+YV+ L+ Q
Sbjct: 114 VRARRGQATDSHSLAERARREKITERMKILQDLVPGCNKVIGKASVLDEIINYVQALERQ 173
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 174 VEFLSM 179
>gi|223945659|gb|ACN26913.1| unknown [Zea mays]
Length = 267
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q + S G ++ VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP
Sbjct: 99 QREVSMECADEKAGDARAKREDYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 158
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ Q++ LSM
Sbjct: 159 GCNKITGKAMMLDEIINYVQSLQRQIEFLSM 189
>gi|242038745|ref|XP_002466767.1| hypothetical protein SORBIDRAFT_01g013843 [Sorghum bicolor]
gi|241920621|gb|EER93765.1| hypothetical protein SORBIDRAFT_01g013843 [Sorghum bicolor]
Length = 535
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 65/86 (75%), Gaps = 4/86 (4%)
Query: 245 AQQPKQRVR-ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
A++P Q++ ARR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y
Sbjct: 314 ARKPPQKMTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 373
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLV 329
+K LQLQV+++ M G A P V
Sbjct: 374 LKSLQLQVQMMWM---GSGIAAPPAV 396
>gi|224103739|ref|XP_002313175.1| predicted protein [Populus trichocarpa]
gi|222849583|gb|EEE87130.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 263 KTRASRGAATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQ 322
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A +A
Sbjct: 323 IKLLSSEDLWMYAPIA 338
>gi|414869720|tpg|DAA48277.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 252
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 5/95 (5%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRERI+ERM+ LQ LVP +K T KA +LDEII+YV+ LQ Q
Sbjct: 139 VRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQ 198
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQA 345
V+ LSM A+++P++ + G D Q
Sbjct: 199 VEFLSMR----IASMSPVLYGFGLDSDGLHDHAQV 229
>gi|168009958|ref|XP_001757672.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691366|gb|EDQ77729.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 83
Score = 92.0 bits (227), Expect = 6e-16, Method: Composition-based stats.
Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K T KA ML+EII+YV+ LQ Q
Sbjct: 6 VRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKITGKAVMLEEIINYVQSLQRQ 65
Query: 311 VKVLSMSRLGGAAAVAP 327
++ LSM AAV P
Sbjct: 66 IEFLSMK----LAAVDP 78
>gi|302812823|ref|XP_002988098.1| hypothetical protein SELMODRAFT_426794 [Selaginella moellendorffii]
gi|300144204|gb|EFJ10890.1| hypothetical protein SELMODRAFT_426794 [Selaginella moellendorffii]
Length = 422
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 54/76 (71%)
Query: 238 GGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASML 297
G PA + RAR+G A DP SIA R RRERI++R+K LQELVPN+ K D +ML
Sbjct: 344 GKAPRVPALNTNFKPRARQGSANDPQSIAARHRRERISDRLKILQELVPNSTKVDLVTML 403
Query: 298 DEIIDYVKFLQLQVKV 313
++ I+YVKFLQLQVKV
Sbjct: 404 EKAINYVKFLQLQVKV 419
>gi|449440736|ref|XP_004138140.1| PREDICTED: transcription factor bHLH79-like [Cucumis sativus]
gi|449477343|ref|XP_004154996.1| PREDICTED: transcription factor bHLH79-like [Cucumis sativus]
Length = 276
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 147 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 206
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 207 VEFLSM 212
>gi|312281887|dbj|BAJ33809.1| unnamed protein product [Thellungiella halophila]
Length = 304
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 65/98 (66%), Gaps = 6/98 (6%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQR-----VRARRGQATDPHSIAERLRRERIAERMK 279
+T+A+ S G NT Q+ VRARRG+ATD HS+AER RRE+I+++MK
Sbjct: 109 KTEAETETSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMK 168
Query: 280 ALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
LQ++VP K T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 169 CLQDIVPGCTKVTGKAGMLDEIINYVQSLQQQVEFLSM 206
>gi|226496303|ref|NP_001147052.1| protein SPATULA [Zea mays]
gi|195606902|gb|ACG25281.1| protein SPATULA [Zea mays]
Length = 215
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR ++ D H+ +ER RR+RI E+++ALQEL+PN KTDK SMLDE IDY+K LQLQ+++L
Sbjct: 17 RRSRSADFHNFSERRRRDRINEKLRALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQML 76
Query: 315 SMSRLGGAAAVAP 327
M + GG A V P
Sbjct: 77 VMGKGGGMAPVVP 89
>gi|413920794|gb|AFW60726.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 328
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 7/103 (6%)
Query: 224 NQTQAQASGSTGGGGGGGN----TPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAER 277
++ + A+G G G G A+ PK VRARRGQATD HS+AER+RRE+I ER
Sbjct: 222 DEERKPAAGEGWRGSGKGKELVAADAEPPKDYIHVRARRGQATDSHSLAERVRREKIGER 281
Query: 278 MKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
MK LQ+LVP +K T KA MLDEII+YV+ LQ QV+V + L
Sbjct: 282 MKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEVRRVCLL 324
>gi|358347900|ref|XP_003637988.1| Transcription factor BPE [Medicago truncatula]
gi|355503923|gb|AES85126.1| Transcription factor BPE [Medicago truncatula]
Length = 249
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 211 VEFLSM 216
>gi|297836564|ref|XP_002886164.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297332004|gb|EFH62423.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 337
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+++MK LQ++VP NK T KA MLDEII+YV+ LQ Q
Sbjct: 185 VRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQ 244
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 245 VEFLSM 250
>gi|326496517|dbj|BAJ94720.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 261
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 69/113 (61%), Gaps = 17/113 (15%)
Query: 221 PVMNQTQAQASGSTGGGGG--------GGNTPAQQPKQ--------RVRARRGQATDPHS 264
P + + A A+ S G GG G + ++QP VRARRGQATD HS
Sbjct: 21 PKVEEEAATATASDGSAGGERGRKQAKGKVSKSKQPAADEPPRDYVHVRARRGQATDSHS 80
Query: 265 IAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
+AER+RRE+I +MK LQ+LVP NK KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 81 LAERVRREKITLKMKMLQDLVPGCNKVIGKALMLDEIINYVQSLQQQVEFLSM 133
>gi|226493752|ref|NP_001140849.1| uncharacterized protein LOC100272925 [Zea mays]
gi|194690530|gb|ACF79349.1| unknown [Zea mays]
gi|194701428|gb|ACF84798.1| unknown [Zea mays]
gi|223949911|gb|ACN29039.1| unknown [Zea mays]
gi|413919543|gb|AFW59475.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 214
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR ++ D H+ +ER RR+RI E+++ALQEL+PN KTDK SMLDE IDY+K LQLQ+++L
Sbjct: 16 RRSRSADFHNFSERRRRDRINEKLRALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQML 75
Query: 315 SMSRLGGAAAVAP 327
M + GG A V P
Sbjct: 76 VMGKGGGMAPVVP 88
>gi|21537215|gb|AAM61556.1| unknown [Arabidopsis thaliana]
Length = 288
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
++T+ G + ++ Q+P VRARRG+ATD HS+AER RRE+I+++MK LQ
Sbjct: 96 DETEPSMKGKSNMSNXETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQ 155
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 156 DIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSM 190
>gi|224100187|ref|XP_002311780.1| predicted protein [Populus trichocarpa]
gi|222851600|gb|EEE89147.1| predicted protein [Populus trichocarpa]
Length = 268
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ++VP NK T KA +LDEII+Y++ LQ Q
Sbjct: 141 VRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVTGKALVLDEIINYIQSLQRQ 200
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 201 VEFLSM 206
>gi|4006909|emb|CAB16839.1| putative protein [Arabidopsis thaliana]
gi|7270602|emb|CAB80320.1| putative protein [Arabidopsis thaliana]
Length = 300
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
++T+ G + ++ Q+P VRARRG+ATD HS+AER RRE+I+++MK LQ
Sbjct: 108 DETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQ 167
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 168 DIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSM 202
>gi|414865634|tpg|DAA44191.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 262
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q + S G ++ VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP
Sbjct: 73 QREVSMECADEKAGDARAKREDYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 132
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ Q++ LSM
Sbjct: 133 GCNKITGKAMMLDEIINYVQSLQRQIEFLSM 163
>gi|34391435|gb|AAN18284.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 288
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
++T+ G + ++ Q+P VRARRG+ATD HS+AER RRE+I+++MK LQ
Sbjct: 96 DETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQ 155
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 156 DIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSM 190
>gi|293333598|ref|NP_001167725.1| uncharacterized protein LOC100381413 [Zea mays]
gi|223943625|gb|ACN25896.1| unknown [Zea mays]
gi|414865638|tpg|DAA44195.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 211
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q + S G ++ VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP
Sbjct: 99 QREVSMECADEKAGDARAKREDYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 158
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ Q++ LSM
Sbjct: 159 GCNKITGKAMMLDEIINYVQSLQRQIEFLSM 189
>gi|297735141|emb|CBI17503.3| unnamed protein product [Vitis vinifera]
Length = 366
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+++MK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 190 VRARRGQATDSHSLAERARREKISKKMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQ 249
Query: 311 VKVLSM 316
V+ LS+
Sbjct: 250 VEFLSL 255
>gi|212723614|ref|NP_001131789.1| uncharacterized protein LOC100193160 [Zea mays]
gi|194692538|gb|ACF80353.1| unknown [Zea mays]
gi|414872589|tpg|DAA51146.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 316
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RA+RGQAT+ HS+AERLRR++I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 138 IRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 197
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 198 VEFLSM 203
>gi|8778763|gb|AAF79771.1|AC009317_30 T30E16.21 [Arabidopsis thaliana]
Length = 348
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 130 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 189
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 190 VEFLSM 195
>gi|357117083|ref|XP_003560304.1| PREDICTED: transcription factor bHLH74-like isoform 1 [Brachypodium
distachyon]
Length = 326
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RA+RGQAT+ HS+AERLRR++I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 146 IRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 205
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 206 VEFLSM 211
>gi|242041659|ref|XP_002468224.1| hypothetical protein SORBIDRAFT_01g042070 [Sorghum bicolor]
gi|241922078|gb|EER95222.1| hypothetical protein SORBIDRAFT_01g042070 [Sorghum bicolor]
Length = 291
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 123 VRAKRGQATNSHSLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEIINYVQSLQRQ 182
Query: 311 VKVLSMSRLGGAAAVAP 327
V+ LSM +A++P
Sbjct: 183 VEFLSMK----LSAISP 195
>gi|225430730|ref|XP_002266502.1| PREDICTED: transcription factor bHLH64-like [Vitis vinifera]
Length = 362
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+++MK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 190 VRARRGQATDSHSLAERARREKISKKMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQ 249
Query: 311 VKVLSM 316
V+ LS+
Sbjct: 250 VEFLSL 255
>gi|15451016|gb|AAK96779.1| Unknown protein [Arabidopsis thaliana]
gi|23198360|gb|AAN15707.1| Unknown protein [Arabidopsis thaliana]
Length = 304
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
++T+ G + ++ Q+P VRARRG+ATD HS+AER RRE+I+++MK LQ
Sbjct: 112 DETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQ 171
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 172 DIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSM 206
>gi|255543048|ref|XP_002512587.1| conserved hypothetical protein [Ricinus communis]
gi|223548548|gb|EEF50039.1| conserved hypothetical protein [Ricinus communis]
Length = 758
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 461 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 520
Query: 314 LSM 316
+SM
Sbjct: 521 MSM 523
>gi|15234436|ref|NP_195372.1| transcription factor BEE 2 [Arabidopsis thaliana]
gi|75305715|sp|Q93VJ4.1|BEE2_ARATH RecName: Full=Transcription factor BEE 2; AltName: Full=Basic
helix-loop-helix protein 58; Short=AtbHLH58; Short=bHLH
58; AltName: Full=Protein Brassinosteroid enhanced
expression 2; AltName: Full=Transcription factor EN 80;
AltName: Full=bHLH transcription factor bHLH058
gi|13877937|gb|AAK44046.1|AF370231_1 unknown protein [Arabidopsis thaliana]
gi|16323468|gb|AAL15228.1| unknown protein [Arabidopsis thaliana]
gi|332661269|gb|AEE86669.1| transcription factor BEE 2 [Arabidopsis thaliana]
Length = 304
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
++T+ G + ++ Q+P VRARRG+ATD HS+AER RRE+I+++MK LQ
Sbjct: 112 DETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQ 171
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 172 DIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSM 206
>gi|297798526|ref|XP_002867147.1| hypothetical protein ARALYDRAFT_491291 [Arabidopsis lyrata subsp.
lyrata]
gi|297312983|gb|EFH43406.1| hypothetical protein ARALYDRAFT_491291 [Arabidopsis lyrata subsp.
lyrata]
Length = 351
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 264 KTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQ 323
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A +A
Sbjct: 324 IKLLSSDDLWMYAPIA 339
>gi|30690689|ref|NP_849508.1| transcription factor BEE 2 [Arabidopsis thaliana]
gi|332661270|gb|AEE86670.1| transcription factor BEE 2 [Arabidopsis thaliana]
Length = 302
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
++T+ G + ++ Q+P VRARRG+ATD HS+AER RRE+I+++MK LQ
Sbjct: 112 DETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQ 171
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 172 DIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSM 206
>gi|115455099|ref|NP_001051150.1| Os03g0728900 [Oryza sativa Japonica Group]
gi|28273388|gb|AAO38474.1| putative Helix-loop-helix DNA-binding domain containing protein
[Oryza sativa Japonica Group]
gi|50428703|gb|AAT77054.1| putative DNA binding protein [Oryza sativa Japonica Group]
gi|108710880|gb|ABF98675.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113549621|dbj|BAF13064.1| Os03g0728900 [Oryza sativa Japonica Group]
gi|125544737|gb|EAY90876.1| hypothetical protein OsI_12481 [Oryza sativa Indica Group]
gi|125587792|gb|EAZ28456.1| hypothetical protein OsJ_12437 [Oryza sativa Japonica Group]
Length = 327
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRA+RGQAT+ HS+AERLRR++I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 147 VRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 206
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 207 VEFLSM 212
>gi|21592490|gb|AAM64440.1| unknown [Arabidopsis thaliana]
Length = 264
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 195
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 196 VEFLSM 201
>gi|356562241|ref|XP_003549380.1| PREDICTED: uncharacterized protein LOC100780907 [Glycine max]
Length = 353
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E ++YVKFLQLQ
Sbjct: 263 KTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQ 322
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A A
Sbjct: 323 IKLLSSDDLWMYAPFA 338
>gi|20127056|gb|AAM10947.1|AF488591_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 304
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ-RVRARRGQATDPHSIAERLRRERIAERMKALQ 282
++T+ G + ++ Q+P VRARRG+ATD HS+AER RRE+I+++MK LQ
Sbjct: 112 DETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQ 171
Query: 283 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
++VP NK T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 172 DIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSM 206
>gi|357117085|ref|XP_003560305.1| PREDICTED: transcription factor bHLH74-like isoform 2 [Brachypodium
distachyon]
Length = 317
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RA+RGQAT+ HS+AERLRR++I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 140 IRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 199
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 200 VEFLSM 205
>gi|357113290|ref|XP_003558437.1| PREDICTED: transcription factor bHLH74-like [Brachypodium
distachyon]
Length = 296
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 59/77 (76%), Gaps = 5/77 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 118 IRAKRGQATNNHSLAERFRREKINERMKHLQDLVPGCNKITGKAMMLDEIINYVQSLQRQ 177
Query: 311 VKVLSMSRLGGAAAVAP 327
V+ LSM +AV+P
Sbjct: 178 VEFLSMK----LSAVSP 190
>gi|18406408|ref|NP_564749.1| transcription factor BPE [Arabidopsis thaliana]
gi|28393152|gb|AAO42009.1| putative bHLH protein [Arabidopsis thaliana]
gi|28827506|gb|AAO50597.1| putative bHLH protein [Arabidopsis thaliana]
gi|113431918|emb|CAK32498.1| basic helix loop helix protein [Arabidopsis thaliana]
gi|332195476|gb|AEE33597.1| transcription factor BPE [Arabidopsis thaliana]
Length = 264
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 195
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 196 VEFLSM 201
>gi|6520231|dbj|BAA87957.1| helix-loop-helix protein homolog [Arabidopsis thaliana]
Length = 318
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 195
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 196 VEFLSM 201
>gi|414865636|tpg|DAA44193.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 275
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q + S G ++ VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP
Sbjct: 103 QREVSMECADEKAGDARAKREDYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 162
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ Q++ LSM
Sbjct: 163 GCNKITGKAMMLDEIINYVQSLQRQIEFLSM 193
>gi|413933172|gb|AFW67723.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 284
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 72/115 (62%), Gaps = 19/115 (16%)
Query: 214 QTFGAPGPVMN-----------QTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDP 262
QT G+P P N + Q++ S G G ++ +RA+RGQAT+
Sbjct: 64 QTKGSPQPERNSVEEGNRKISPKMQSKEDSSDGDG-------TKEDYVHIRAKRGQATNS 116
Query: 263 HSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
HS+AERLRR++I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 117 HSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSM 171
>gi|224119176|ref|XP_002318005.1| predicted protein [Populus trichocarpa]
gi|222858678|gb|EEE96225.1| predicted protein [Populus trichocarpa]
Length = 272
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 63/92 (68%), Gaps = 10/92 (10%)
Query: 244 PAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDE 299
P++ P Q VR+RRGQATD HS+AER RRERI ERMK LQ+LVP NK KA LDE
Sbjct: 132 PSEPPMQDYIHVRSRRGQATDSHSLAERARRERIGERMKILQDLVPGCNKVIGKALALDE 191
Query: 300 IIDYVKFLQLQVKVLSM------SRLGGAAAV 325
II+Y++ LQ QV+ LSM SR+ + A+
Sbjct: 192 IINYIQSLQCQVEFLSMKLEAVNSRMSTSPAI 223
>gi|30696324|ref|NP_849829.1| transcription factor BPE [Arabidopsis thaliana]
gi|122222656|sp|Q0JXE7.1|BPE_ARATH RecName: Full=Transcription factor BPE; AltName: Full=Basic
helix-loop-helix protein 31; Short=AtbHLH31; Short=bHLH
31; AltName: Full=Protein BIG PETAL; AltName:
Full=Transcription factor EN 88; AltName: Full=bHLH
transcription factor bHLH031
gi|113431920|emb|CAK32499.1| basic helix loop helix protein [Arabidopsis thaliana]
gi|332195477|gb|AEE33598.1| transcription factor BPE [Arabidopsis thaliana]
Length = 343
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 195
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 196 VEFLSM 201
>gi|224124534|ref|XP_002330047.1| predicted protein [Populus trichocarpa]
gi|222871472|gb|EEF08603.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 453 SKRNRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 512
Query: 314 LSM 316
+SM
Sbjct: 513 MSM 515
>gi|297837577|ref|XP_002886670.1| hypothetical protein ARALYDRAFT_893615 [Arabidopsis lyrata subsp.
lyrata]
gi|297332511|gb|EFH62929.1| hypothetical protein ARALYDRAFT_893615 [Arabidopsis lyrata subsp.
lyrata]
Length = 264
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 195
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 196 VEFLSM 201
>gi|449469332|ref|XP_004152375.1| PREDICTED: transcription factor bHLH84-like [Cucumis sativus]
gi|449530384|ref|XP_004172175.1| PREDICTED: transcription factor bHLH84-like [Cucumis sativus]
Length = 341
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 57/87 (65%)
Query: 240 GGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDE 299
GG T + + RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E
Sbjct: 235 GGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEE 294
Query: 300 IIDYVKFLQLQVKVLSMSRLGGAAAVA 326
+ YVKFLQLQ+K+LS L A +A
Sbjct: 295 AVQYVKFLQLQIKLLSSDDLWMYAPIA 321
>gi|224134264|ref|XP_002327796.1| predicted protein [Populus trichocarpa]
gi|222836881|gb|EEE75274.1| predicted protein [Populus trichocarpa]
Length = 290
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+++MK+LQ+LVP NK T +A MLDEII+YV+ LQ Q
Sbjct: 202 VRARRGQATDSHSLAERARREKISKKMKSLQDLVPGCNKITGRAGMLDEIINYVQSLQRQ 261
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 262 VEFLSM 267
>gi|116831075|gb|ABK28492.1| unknown [Arabidopsis thaliana]
Length = 329
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 236 KTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQ 295
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A +A
Sbjct: 296 IKLLSSDDLWMYAPIA 311
>gi|296089857|emb|CBI39676.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 322 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 381
Query: 314 LSM 316
+SM
Sbjct: 382 MSM 384
>gi|42569042|ref|NP_179083.2| transcription factor bHLH84 [Arabidopsis thaliana]
gi|75296240|sp|Q7XHI9.1|BH084_ARATH RecName: Full=Transcription factor bHLH84; AltName: Full=Basic
helix-loop-helix protein 84; Short=AtbHLH84; Short=bHLH
84; AltName: Full=bHLH transcription factor bHLH084
gi|33111969|emb|CAE12171.1| putative bHLH084 transcription factor [Arabidopsis thaliana]
gi|91806168|gb|ABE65812.1| basic helix-loop-helix protein/bHLH protein [Arabidopsis thaliana]
gi|330251237|gb|AEC06331.1| transcription factor bHLH84 [Arabidopsis thaliana]
Length = 328
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 236 KTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQ 295
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A +A
Sbjct: 296 IKLLSSDDLWMYAPIA 311
>gi|255538250|ref|XP_002510190.1| conserved hypothetical protein [Ricinus communis]
gi|223550891|gb|EEF52377.1| conserved hypothetical protein [Ricinus communis]
Length = 312
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 60/80 (75%)
Query: 237 GGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASM 296
G P++ + R ++R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASM
Sbjct: 104 GAEVAEVPSETVRPRNSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASM 163
Query: 297 LDEIIDYVKFLQLQVKVLSM 316
LDE I+Y+K LQLQV++L+M
Sbjct: 164 LDEAIEYLKQLQLQVQMLTM 183
>gi|414865635|tpg|DAA44192.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 185
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
Q + S G ++ VRA+RGQAT+ HS+AER RRE+I ERMK LQ+LVP
Sbjct: 73 QREVSMECADEKAGDARAKREDYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 132
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK T KA MLDEII+YV+ LQ Q++ LSM
Sbjct: 133 GCNKITGKAMMLDEIINYVQSLQRQIEFLSM 163
>gi|357159196|ref|XP_003578371.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 372
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I +MK LQ+LVP NK KA MLDEII+YV+ LQ Q
Sbjct: 177 VRARRGQATDSHSLAERVRREKITIKMKMLQDLVPGCNKVIGKALMLDEIINYVQSLQQQ 236
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 237 VEFLSM 242
>gi|388504966|gb|AFK40549.1| unknown [Medicago truncatula]
Length = 278
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD H +AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 151 VRARRGQATDSHGLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 211 VEFLSM 216
>gi|77556960|gb|ABA99756.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
gi|125537220|gb|EAY83708.1| hypothetical protein OsI_38930 [Oryza sativa Indica Group]
gi|125579902|gb|EAZ21048.1| hypothetical protein OsJ_36693 [Oryza sativa Japonica Group]
Length = 304
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 54/78 (69%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K + RA RG ATDP S+ R RRERI ER+K LQ LVPN K D ++ML+E + YVKFLQ
Sbjct: 213 KGKSRAGRGAATDPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 272
Query: 309 LQVKVLSMSRLGGAAAVA 326
LQ+K+LS + A +A
Sbjct: 273 LQIKLLSSDEMWMYAPIA 290
>gi|147770956|emb|CAN76246.1| hypothetical protein VITISV_023382 [Vitis vinifera]
Length = 627
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 443 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 502
Query: 314 LSM 316
+SM
Sbjct: 503 MSM 505
>gi|255648089|gb|ACU24499.1| unknown [Glycine max]
Length = 229
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 57/75 (76%), Gaps = 4/75 (5%)
Query: 246 QQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEII 301
Q PKQ VRARRGQATD HS+AER RRE+I+ERMK LQ++VP NK KA +LDEII
Sbjct: 91 QPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEII 150
Query: 302 DYVKFLQLQVKVLSM 316
+Y++ LQ QV+ L M
Sbjct: 151 NYIQSLQHQVEFLFM 165
>gi|449448502|ref|XP_004142005.1| PREDICTED: uncharacterized protein LOC101217594 [Cucumis sativus]
Length = 406
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 247 QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKF 306
+P R ++R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K
Sbjct: 163 KPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQ 222
Query: 307 LQLQVKVLSM 316
LQLQV++LSM
Sbjct: 223 LQLQVQMLSM 232
>gi|449443927|ref|XP_004139727.1| PREDICTED: transcription factor PIF1-like [Cucumis sativus]
Length = 529
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 59/73 (80%), Gaps = 4/73 (5%)
Query: 248 PKQRVR----ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PK+++R +R +A + H+++ER RR+RI E+MKALQEL+P NKTDKASMLDE I+Y
Sbjct: 302 PKKQLRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 361
Query: 304 VKFLQLQVKVLSM 316
+K LQLQV+++SM
Sbjct: 362 LKTLQLQVQMMSM 374
>gi|359487706|ref|XP_002276198.2| PREDICTED: transcription factor PIF3-like [Vitis vinifera]
Length = 752
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 458 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 517
Query: 314 LSM 316
+SM
Sbjct: 518 MSM 520
>gi|242086066|ref|XP_002443458.1| hypothetical protein SORBIDRAFT_08g019780 [Sorghum bicolor]
gi|241944151|gb|EES17296.1| hypothetical protein SORBIDRAFT_08g019780 [Sorghum bicolor]
Length = 316
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 55/77 (71%)
Query: 239 GGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLD 298
G G+ A++PK + RA R T+P SI R RRERI ER+K LQ LVPN K D ++ML+
Sbjct: 213 GDGDADARRPKGKGRAGRSATTEPQSIYARKRRERINERLKILQNLVPNGTKVDISTMLE 272
Query: 299 EIIDYVKFLQLQVKVLS 315
E + YVKFLQLQ+++LS
Sbjct: 273 EAVHYVKFLQLQIRLLS 289
>gi|371534690|gb|AEX32796.1| phytochrome-interacting factor 3 [Malus x domestica]
Length = 713
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 451 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 510
Query: 314 LSM 316
+SM
Sbjct: 511 MSM 513
>gi|388498252|gb|AFK37192.1| unknown [Lotus japonicus]
Length = 220
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 91 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQ 150
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 151 VEFLSM 156
>gi|449454115|ref|XP_004144801.1| PREDICTED: transcription factor PIF3-like [Cucumis sativus]
gi|449522990|ref|XP_004168508.1| PREDICTED: transcription factor PIF3-like [Cucumis sativus]
Length = 696
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 458 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQI 517
Query: 314 LSM 316
+SM
Sbjct: 518 MSM 520
>gi|224120394|ref|XP_002331037.1| predicted protein [Populus trichocarpa]
gi|222872967|gb|EEF10098.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 60/83 (72%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKF 306
P VRARRGQATD HS+AER RRE+I +RMK LQELVP NK A +LDEII++V+
Sbjct: 173 PYVHVRARRGQATDSHSLAERARREKINQRMKLLQELVPGCNKISGTALVLDEIINHVQS 232
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ QV+ LSM RL AAV P +
Sbjct: 233 LQCQVEFLSM-RL---AAVNPRI 251
>gi|414872588|tpg|DAA51145.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 209
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RA+RGQAT+ HS+AERLRR++I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 31 IRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 90
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 91 VEFLSM 96
>gi|356553998|ref|XP_003545337.1| PREDICTED: uncharacterized protein LOC100797500 [Glycine max]
Length = 350
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 54/76 (71%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E ++YVKFLQLQ
Sbjct: 260 KTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQ 319
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A +A
Sbjct: 320 IKLLSSDDLWMYAPLA 335
>gi|449485549|ref|XP_004157205.1| PREDICTED: uncharacterized protein LOC101227644 [Cucumis sativus]
Length = 415
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 247 QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKF 306
+P R ++R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K
Sbjct: 163 KPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQ 222
Query: 307 LQLQVKVLSM 316
LQLQV++LSM
Sbjct: 223 LQLQVQMLSM 232
>gi|255573157|ref|XP_002527508.1| DNA binding protein, putative [Ricinus communis]
gi|223533148|gb|EEF34906.1| DNA binding protein, putative [Ricinus communis]
Length = 296
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP SI R RRERI ER++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 206 KTRASRGAATDPQSIYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQ 265
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A +A
Sbjct: 266 IKLLSSDDLWMYAPLA 281
>gi|449462268|ref|XP_004148863.1| PREDICTED: transcription factor bHLH62-like [Cucumis sativus]
Length = 187
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRG+ATD HS+AER RRE+I+ERMK LQ LVP NK KA MLDEII+YV+ LQ Q
Sbjct: 6 VRARRGKATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQ 65
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 66 VEFLSM 71
>gi|356502821|ref|XP_003520214.1| PREDICTED: uncharacterized protein LOC100788949 [Glycine max]
Length = 320
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 82/141 (58%), Gaps = 19/141 (13%)
Query: 265 IAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAA 324
+ ER RR+RIA+ +KAL EL+PN + +A +LD+IIDYVK+LQLQ+K S SRL A +
Sbjct: 189 VTERQRRQRIADNLKALHELLPNPAEGSQAYVLDDIIDYVKYLQLQIKEQSGSRLLQADS 248
Query: 325 VA-PLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQY 383
A PLV EG G + N+ L E + KL+E+D +A+Q
Sbjct: 249 TAIPLVF---HEGYG------------HYINQKMLNEPL---EEIMGKLVEDDSAAAVQL 290
Query: 384 LQGKGLCLMPISLATAISTAT 404
L+ KGL L+P++L +S A
Sbjct: 291 LESKGLFLLPMALVDELSEAV 311
>gi|168021524|ref|XP_001763291.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685426|gb|EDQ71821.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 537
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 49/71 (69%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA + RARRG ATDP S+ R RRE+I ER+K LQ LVPN K D +MLDE I Y
Sbjct: 434 PALNTNGKPRARRGSATDPQSVYARHRREKINERLKTLQHLVPNGAKVDIVTMLDEAIHY 493
Query: 304 VKFLQLQVKVL 314
V+FLQLQV +L
Sbjct: 494 VQFLQLQVTLL 504
>gi|359480088|ref|XP_002263397.2| PREDICTED: transcription factor PIF1-like [Vitis vinifera]
Length = 517
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%), Gaps = 4/72 (5%)
Query: 249 KQRVR----ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
K++VR A+R +A + H+++ER RR+RI E+MKALQEL+P NK+DKASMLDE I+Y+
Sbjct: 295 KKQVRGSATAKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYL 354
Query: 305 KFLQLQVKVLSM 316
K LQLQV+++SM
Sbjct: 355 KSLQLQVQMMSM 366
>gi|363808192|ref|NP_001242485.1| uncharacterized protein LOC100809878 [Glycine max]
gi|255644791|gb|ACU22897.1| unknown [Glycine max]
Length = 224
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 57/75 (76%), Gaps = 4/75 (5%)
Query: 246 QQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEII 301
Q PKQ VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LD II
Sbjct: 90 QAPKQDYIHVRARRGQATDNHSLAERARREKISERMKILQDLVPGCNKVIGKAFVLDGII 149
Query: 302 DYVKFLQLQVKVLSM 316
+YV+ LQ QV+ LSM
Sbjct: 150 NYVQSLQRQVEFLSM 164
>gi|302784756|ref|XP_002974150.1| hypothetical protein SELMODRAFT_414414 [Selaginella moellendorffii]
gi|300158482|gb|EFJ25105.1| hypothetical protein SELMODRAFT_414414 [Selaginella moellendorffii]
Length = 499
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 232 GSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT 291
S+ G PA + RA++G A DP SIA R RRERI++R+K LQEL+PN +K
Sbjct: 388 ASSKRGNSHKREPALNTNLKPRAKQGCANDPQSIAARQRRERISDRLKILQELIPNGSKV 447
Query: 292 DKASMLDEIIDYVKFLQLQVKVL 314
D +ML++ I+YVKFLQLQVKVL
Sbjct: 448 DLVTMLEKAINYVKFLQLQVKVL 470
>gi|449438623|ref|XP_004137087.1| PREDICTED: transcription factor bHLH85-like [Cucumis sativus]
gi|449495759|ref|XP_004159936.1| PREDICTED: transcription factor bHLH85-like [Cucumis sativus]
Length = 279
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 183 KSRASRGSATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQ 242
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A +A
Sbjct: 243 IKLLSSDDLWMYAPIA 258
>gi|255538082|ref|XP_002510106.1| transcription factor, putative [Ricinus communis]
gi|223550807|gb|EEF52293.1| transcription factor, putative [Ricinus communis]
Length = 327
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 60/98 (61%)
Query: 229 QASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA 288
+ + S G + A K + RA RG ATDP S+ R RRERI ER++ LQ LVPN
Sbjct: 214 EDNASQDSNGDSKVSEALNSKGKARAGRGSATDPQSLYARKRRERINERLRILQNLVPNG 273
Query: 289 NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
K D ++ML+E + YVKFLQLQ+K+LS L A +A
Sbjct: 274 TKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIA 311
>gi|295913621|gb|ADG58055.1| transcription factor [Lycoris longituba]
Length = 207
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 234 TGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TD 292
+G G N +Q VRARRG+ATD HS+AER+RRERI+ERMK L+ LVP NK T
Sbjct: 132 SGNGSKEKNEDKKQDYIHVRARRGEATDSHSLAERVRRERISERMKYLEGLVPGCNKITG 191
Query: 293 KASMLDEIIDYVKFLQ 308
KA MLDEII+YV+ LQ
Sbjct: 192 KAGMLDEIINYVQSLQ 207
>gi|356534283|ref|XP_003535686.1| PREDICTED: transcription factor bHLH85-like [Glycine max]
Length = 358
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 226 TQAQASGSTGGGGGGGNTPAQ-QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQEL 284
+Q+ ++ GG PA ++ RA G ATDP S+ R RRERI ER++ LQ L
Sbjct: 237 SQSDSNAYLEPNGGASKDPAPPNLHRKSRATTGAATDPQSLYARKRRERINERLRILQNL 296
Query: 285 VPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
VPN K D ++ML+E + YVKFLQLQ+K+LS L A +A
Sbjct: 297 VPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIA 338
>gi|334183900|ref|NP_001185394.1| transcription factor BEE 3 [Arabidopsis thaliana]
gi|332197393|gb|AEE35514.1| transcription factor BEE 3 [Arabidopsis thaliana]
Length = 260
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 67/98 (68%), Gaps = 7/98 (7%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HSIAER+RR +I ER+K LQ++VP KT A+MLDEII+YV+ LQ Q
Sbjct: 147 VRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQ 206
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGR 348
V+ LSM +L A++ D +SE + +QA R
Sbjct: 207 VEFLSM-KLTAASS----YYDFNSE-TDAVESMQAKAR 238
>gi|357441953|ref|XP_003591254.1| Transcription factor PIF3 [Medicago truncatula]
gi|355480302|gb|AES61505.1| Transcription factor PIF3 [Medicago truncatula]
Length = 721
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 464 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 523
Query: 314 LSM 316
+SM
Sbjct: 524 MSM 526
>gi|326514040|dbj|BAJ92170.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 341
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Query: 245 AQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
AQ+P A+R +A H+++ER RR+RI E+M+ALQELVP+ NKTDKASMLDE I+Y+
Sbjct: 227 AQKP---ATAKRRRAAQVHNLSERRRRDRINEKMRALQELVPHCNKTDKASMLDEAIEYL 283
Query: 305 KFLQLQVKVLSMSRLGGAAAVAPLV 329
K LQLQ++V M +GG A AP++
Sbjct: 284 KSLQLQLQV--MWAMGGRMAPAPVM 306
>gi|225458820|ref|XP_002283302.1| PREDICTED: transcription factor bHLH84 [Vitis vinifera]
Length = 380
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 286 KTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQ 345
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS + A +A
Sbjct: 346 IKLLSSDDMWMYAPIA 361
>gi|12324208|gb|AAG52074.1|AC012679_12 putative helix-loop-helix DNA-binding protein; 87971-89290
[Arabidopsis thaliana]
Length = 250
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 222 VMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKAL 281
++ + AQ S G ++ VRARRGQATD HSIAER+RR +I ER+K L
Sbjct: 106 TLSTSSAQNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCL 165
Query: 282 QELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGG 340
Q++VP KT A+MLDEII+YV+ LQ QV+ LSM +L A++ D +SE
Sbjct: 166 QDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSM-KLTAASS----YYDFNSETDAVE 220
Query: 341 DCIQANGR 348
+A R
Sbjct: 221 SMQKAKAR 228
>gi|212720610|ref|NP_001131794.1| uncharacterized protein LOC100193167 [Zea mays]
gi|194692562|gb|ACF80365.1| unknown [Zea mays]
gi|413953032|gb|AFW85681.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 312
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 65/93 (69%), Gaps = 8/93 (8%)
Query: 231 SGSTGGGGGGGNTPAQQPKQRVRA-------RRGQATDPHSIAERLRRERIAERMKALQE 283
+G G GG+ P + P +R R +R +A + H+++E+ RR +I E+MKALQ
Sbjct: 72 AGGLGDSDAGGSEP-EPPPERTRGGSGGGGGKRSRAAEVHNLSEKRRRSKINEKMKALQS 130
Query: 284 LVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
L+PN+NKTDKASMLDE I+Y+K LQLQV++LSM
Sbjct: 131 LIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 163
>gi|147805319|emb|CAN71946.1| hypothetical protein VITISV_007899 [Vitis vinifera]
Length = 380
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 286 KTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQ 345
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS + A +A
Sbjct: 346 IKLLSSDDMWMYAPIA 361
>gi|449439537|ref|XP_004137542.1| PREDICTED: transcription factor BEE 3-like [Cucumis sativus]
gi|449532109|ref|XP_004173026.1| PREDICTED: transcription factor BEE 3-like [Cucumis sativus]
Length = 265
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 95/183 (51%), Gaps = 33/183 (18%)
Query: 196 GSTQPQHFHHL--QVRSMP----GQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPK 249
+T HFH + + +SMP T G P ++++ S+G G + ++ K
Sbjct: 81 STTTHHHFHDINNKRKSMPMDVSESTSGISTPQVSESGFNTKYSSGKGKRLKSLEKEEEK 140
Query: 250 Q-----RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDY 303
VRARRGQATD HS+AER+RR +I ER++ L+++VP KT A MLDEII+Y
Sbjct: 141 STREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINY 200
Query: 304 VKFLQLQVKVLSMSRLGGAA----------AVAPL----------VADMSSEGGGGGDCI 343
V+ LQ QV+ LSM +L A+ A++ L + + EG GG C
Sbjct: 201 VQSLQNQVEFLSM-KLAAASSFYDFNSEADAISKLQRAKAHEAKELERLMKEGYGGIACF 259
Query: 344 QAN 346
+N
Sbjct: 260 HSN 262
>gi|302770807|ref|XP_002968822.1| hypothetical protein SELMODRAFT_409967 [Selaginella moellendorffii]
gi|300163327|gb|EFJ29938.1| hypothetical protein SELMODRAFT_409967 [Selaginella moellendorffii]
Length = 499
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 57/82 (69%)
Query: 233 STGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD 292
S+ G PA + RA++G A DP SIA R RRERI++R+K LQEL+PN +K D
Sbjct: 389 SSKRGNSHKREPALNTNLKPRAKQGCANDPQSIAARQRRERISDRLKILQELIPNGSKVD 448
Query: 293 KASMLDEIIDYVKFLQLQVKVL 314
+ML++ I+YVKFLQLQVKVL
Sbjct: 449 LVTMLEKAINYVKFLQLQVKVL 470
>gi|297744279|emb|CBI37249.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%), Gaps = 4/72 (5%)
Query: 249 KQRVR----ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
K++VR A+R +A + H+++ER RR+RI E+MKALQEL+P NK+DKASMLDE I+Y+
Sbjct: 257 KKQVRGSATAKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYL 316
Query: 305 KFLQLQVKVLSM 316
K LQLQV+++SM
Sbjct: 317 KSLQLQVQMMSM 328
>gi|224060782|ref|XP_002300268.1| predicted protein [Populus trichocarpa]
gi|222847526|gb|EEE85073.1| predicted protein [Populus trichocarpa]
Length = 317
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA +G ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 223 KTRASKGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQ 282
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A +A
Sbjct: 283 IKLLSSEDLWMYAPIA 298
>gi|224069945|ref|XP_002303090.1| predicted protein [Populus trichocarpa]
gi|222844816|gb|EEE82363.1| predicted protein [Populus trichocarpa]
Length = 615
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 59/72 (81%), Gaps = 4/72 (5%)
Query: 249 KQRVR----ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
K+R+R ++R +A + H+++ER RR+RI E+M+ALQEL+P NK+DKASMLDE I+Y+
Sbjct: 354 KKRIRGSMSSKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYL 413
Query: 305 KFLQLQVKVLSM 316
K LQLQV+++SM
Sbjct: 414 KSLQLQVQMMSM 425
>gi|357115750|ref|XP_003559649.1| PREDICTED: transcription factor PIF1-like [Brachypodium distachyon]
Length = 445
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
ARR +A + H+++ER RR+RI E+MKALQEL+P+ NKTDKASMLDE I+Y+K LQ+QV++
Sbjct: 262 ARRSRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKTLQMQVQM 321
Query: 314 LSM 316
+ M
Sbjct: 322 MWM 324
>gi|124360931|gb|ABN08903.1| Helix-loop-helix DNA-binding [Medicago truncatula]
Length = 484
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 54/62 (87%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++ER RR+RI E+MKALQEL+P +NK+DKASMLDE IDY+K LQLQV+++
Sbjct: 255 KRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIDYLKSLQLQVQMM 314
Query: 315 SM 316
SM
Sbjct: 315 SM 316
>gi|30698967|ref|NP_177524.2| transcription factor BEE 3 [Arabidopsis thaliana]
gi|75299562|sp|Q8GWK7.1|BEE3_ARATH RecName: Full=Transcription factor BEE 3; AltName: Full=Basic
helix-loop-helix protein 50; Short=AtbHLH50; Short=bHLH
50; AltName: Full=Protein Brassinosteroid enhanced
expression 3; AltName: Full=Transcription factor EN 76;
AltName: Full=bHLH transcription factor bHLH050
gi|26452579|dbj|BAC43374.1| putative bHLH transcription factor bHLH050 [Arabidopsis thaliana]
gi|29824159|gb|AAP04040.1| putative helix-loop-helix DNA-binding protein [Arabidopsis
thaliana]
gi|332197392|gb|AEE35513.1| transcription factor BEE 3 [Arabidopsis thaliana]
Length = 261
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 65/98 (66%), Gaps = 6/98 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HSIAER+RR +I ER+K LQ++VP KT A+MLDEII+YV+ LQ Q
Sbjct: 147 VRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQ 206
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGR 348
V+ LSM +L A++ D +SE +A R
Sbjct: 207 VEFLSM-KLTAASS----YYDFNSETDAVESMQKAKAR 239
>gi|357486401|ref|XP_003613488.1| BHLH transcription factor [Medicago truncatula]
gi|355514823|gb|AES96446.1| BHLH transcription factor [Medicago truncatula]
Length = 239
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y++ L Q
Sbjct: 112 VRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQ 171
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 172 VEFLSM 177
>gi|297832118|ref|XP_002883941.1| hypothetical protein ARALYDRAFT_319546 [Arabidopsis lyrata subsp.
lyrata]
gi|297329781|gb|EFH60200.1| hypothetical protein ARALYDRAFT_319546 [Arabidopsis lyrata subsp.
lyrata]
Length = 486
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 53/63 (84%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
+R +A + H+++ER RR+RI ERMKALQEL+P NK+DKASMLDE I+Y+K LQLQ++V
Sbjct: 289 TKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQV 348
Query: 314 LSM 316
+SM
Sbjct: 349 MSM 351
>gi|226491584|ref|NP_001147257.1| protein SPATULA [Zea mays]
gi|195609152|gb|ACG26406.1| protein SPATULA [Zea mays]
Length = 185
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 58/75 (77%), Gaps = 2/75 (2%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
ARR ++ + H+ +ER RR++I E++KALQEL+PN NKTDK SMLDE IDY+K LQLQ+++
Sbjct: 14 ARRSRSAEFHNFSERRRRDKINEKLKALQELLPNCNKTDKVSMLDEAIDYLKSLQLQLQM 73
Query: 314 LSMSRLGGAAAVAPL 328
L M + G + V PL
Sbjct: 74 LVMGK--GMSPVVPL 86
>gi|238015240|gb|ACR38655.1| unknown [Zea mays]
Length = 435
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 58/76 (76%), Gaps = 3/76 (3%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
A+R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 177 AKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQM 236
Query: 314 LSMSRLGGAAAVAPLV 329
+SM G + P++
Sbjct: 237 MSM---GSGLCIPPML 249
>gi|356511528|ref|XP_003524477.1| PREDICTED: transcription factor bHLH77-like [Glycine max]
Length = 324
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 60/81 (74%), Gaps = 5/81 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I++RM LQ LVP +K T KA +LDEII+YV+ LQ Q
Sbjct: 138 VRARRGQATDSHSLAERVRREKISKRMTTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQ 197
Query: 311 VKVLSMSRLGGAAAVAPLVAD 331
V+ LSM A+V P+ D
Sbjct: 198 VEFLSMK----LASVNPMFFD 214
>gi|326521466|dbj|BAK00309.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 440
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 66/97 (68%), Gaps = 6/97 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
+RAR GQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K KA MLDEII+YV+ LQ Q
Sbjct: 265 IRARSGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVIGKAVMLDEIINYVQSLQRQ 324
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANG 347
V+ LSM +AV P + D + E D Q+ G
Sbjct: 325 VEFLSMK----LSAVNPAL-DFNIERILSKDLFQSQG 356
>gi|116830915|gb|ABK28414.1| unknown [Arabidopsis thaliana]
Length = 224
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 61/86 (70%), Gaps = 4/86 (4%)
Query: 246 QQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
Q+PK VRA+RGQATD HS+AER+RRE+I ER+K LQ+LVP K A MLD IID
Sbjct: 96 QKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIID 155
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAPL 328
YV+ LQ Q++ LSM +L A+A L
Sbjct: 156 YVRSLQNQIEFLSM-KLSAASACYDL 180
>gi|15217533|ref|NP_172424.1| transcription factor PIF3 [Arabidopsis thaliana]
gi|30681206|ref|NP_849626.1| transcription factor PIF3 [Arabidopsis thaliana]
gi|20532207|sp|O80536.1|PIF3_ARATH RecName: Full=Transcription factor PIF3; AltName: Full=Basic
helix-loop-helix protein 8; Short=AtbHLH8; Short=bHLH 8;
AltName: Full=Phytochrome-associated protein 3; AltName:
Full=Phytochrome-interacting factor 3; AltName:
Full=Transcription factor EN 100; AltName: Full=bHLH
transcription factor bHLH008
gi|18026964|gb|AAL55715.1|AF251693_1 putative transcription factor BHLH8 [Arabidopsis thaliana]
gi|3482928|gb|AAC33213.1| Unknown protein [Arabidopsis thaliana]
gi|3929586|gb|AAC95156.1| phytochrome interacting factor 3 [Arabidopsis thaliana]
gi|26449609|dbj|BAC41930.1| putative transcription factor BHLH8 [Arabidopsis thaliana]
gi|332190336|gb|AEE28457.1| transcription factor PIF3 [Arabidopsis thaliana]
gi|332190337|gb|AEE28458.1| transcription factor PIF3 [Arabidopsis thaliana]
Length = 524
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 55/64 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R ++ + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQI 398
Query: 314 LSMS 317
+SM+
Sbjct: 399 MSMA 402
>gi|18395643|ref|NP_564229.1| transcription factor bHLH75 [Arabidopsis thaliana]
gi|218563498|sp|A4D998.1|BH075_ARATH RecName: Full=Transcription factor bHLH75; AltName: Full=Basic
helix-loop-helix protein 75; Short=AtbHLH75; Short=bHLH
75; AltName: Full=Transcription factor EN 78; AltName:
Full=bHLH transcription factor bHLH075
gi|21618141|gb|AAM67191.1| helix-loop-helix protein homolog, putative [Arabidopsis thaliana]
gi|51969656|dbj|BAD43520.1| putative bHLH transcription factor (bHLH075) [Arabidopsis thaliana]
gi|91805851|gb|ABE65654.1| basic helix-loop-helix family protein [Arabidopsis thaliana]
gi|332192486|gb|AEE30607.1| transcription factor bHLH75 [Arabidopsis thaliana]
Length = 223
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 61/86 (70%), Gaps = 4/86 (4%)
Query: 246 QQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
Q+PK VRA+RGQATD HS+AER+RRE+I ER+K LQ+LVP K A MLD IID
Sbjct: 96 QKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIID 155
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAPL 328
YV+ LQ Q++ LSM +L A+A L
Sbjct: 156 YVRSLQNQIEFLSM-KLSAASACYDL 180
>gi|449439405|ref|XP_004137476.1| PREDICTED: transcription factor BEE 3-like [Cucumis sativus]
gi|449531561|ref|XP_004172754.1| PREDICTED: transcription factor BEE 3-like [Cucumis sativus]
Length = 278
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Query: 240 GGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASM 296
G ++P++ VRARRGQATD HS+AER+RR +I ER++ LQ++VP KT A M
Sbjct: 139 GDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVM 198
Query: 297 LDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQ 344
LDEII+YV+ LQ QV+ LSM +L A++ +D +E G I+
Sbjct: 199 LDEIINYVQSLQNQVEFLSM-KLTAASSYHDFNSDSDAEDKLKGKEIR 245
>gi|108710019|gb|ABF97814.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 481
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 56/69 (81%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P + ARR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K L
Sbjct: 308 PAKMTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 367
Query: 308 QLQVKVLSM 316
QLQ++++ M
Sbjct: 368 QLQLQMMWM 376
>gi|302759440|ref|XP_002963143.1| hypothetical protein SELMODRAFT_404767 [Selaginella moellendorffii]
gi|300170004|gb|EFJ36606.1| hypothetical protein SELMODRAFT_404767 [Selaginella moellendorffii]
Length = 302
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 50/72 (69%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA + RA+RG ATDP S+ R RRERI ER+K LQ LVPN K D +ML+E I Y
Sbjct: 203 PALNTNGKPRAKRGSATDPQSVYARHRRERINERLKTLQHLVPNGAKVDIVTMLEEAIHY 262
Query: 304 VKFLQLQVKVLS 315
VKFLQLQV +LS
Sbjct: 263 VKFLQLQVNMLS 274
>gi|225441702|ref|XP_002282897.1| PREDICTED: transcription factor bHLH60 [Vitis vinifera]
gi|297739713|emb|CBI29895.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 65/103 (63%), Gaps = 9/103 (8%)
Query: 232 GSTGGGGGGGNTPAQQ----PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPN 287
GST N +++ P VRARRGQATD HS+AER RRE+I RMK LQELVP
Sbjct: 173 GSTKKCKNASNETSEEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPG 232
Query: 288 ANKTD-KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
NK A +LDEII +V+ LQ QV+ LSM RL AAV P +
Sbjct: 233 CNKISGTALVLDEIISHVQSLQRQVEFLSM-RL---AAVNPRI 271
>gi|108710018|gb|ABF97813.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 485
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 56/69 (81%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P + ARR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K L
Sbjct: 308 PAKMTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 367
Query: 308 QLQVKVLSM 316
QLQ++++ M
Sbjct: 368 QLQLQMMWM 376
>gi|357124540|ref|XP_003563957.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 441
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
+RAR GQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K KA MLDEII+YV+ LQ Q
Sbjct: 263 IRARSGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVIGKAVMLDEIINYVQSLQRQ 322
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 323 VEFLSM 328
>gi|238008194|gb|ACR35132.1| unknown [Zea mays]
gi|413946840|gb|AFW79489.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 638
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 58/76 (76%), Gaps = 3/76 (3%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
A+R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 380 AKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQM 439
Query: 314 LSMSRLGGAAAVAPLV 329
+SM G + P++
Sbjct: 440 MSM---GSGLCIPPML 452
>gi|125545009|gb|EAY91148.1| hypothetical protein OsI_12756 [Oryza sativa Indica Group]
Length = 469
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 56/69 (81%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P + ARR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K L
Sbjct: 289 PAKMTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 348
Query: 308 QLQVKVLSM 316
QLQ++++ M
Sbjct: 349 QLQLQMMWM 357
>gi|297843750|ref|XP_002889756.1| hypothetical protein ARALYDRAFT_471048 [Arabidopsis lyrata subsp.
lyrata]
gi|297335598|gb|EFH66015.1| hypothetical protein ARALYDRAFT_471048 [Arabidopsis lyrata subsp.
lyrata]
Length = 522
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 55/64 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R ++ + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 337 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQI 396
Query: 314 LSMS 317
+SM+
Sbjct: 397 MSMA 400
>gi|193848525|gb|ACF22714.1| putative TA1 protein [Brachypodium distachyon]
Length = 428
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
+RAR GQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K KA MLDEII+YV+ LQ Q
Sbjct: 263 IRARSGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVIGKAVMLDEIINYVQSLQRQ 322
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 323 VEFLSM 328
>gi|295881692|gb|ADG56590.1| ALCATRAZ/SPATULA-like protein [Prunus persica]
Length = 386
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 55/66 (83%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
R ++R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQ
Sbjct: 151 RSSSKRSRAAEVHNMSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ 210
Query: 311 VKVLSM 316
V++LSM
Sbjct: 211 VQMLSM 216
>gi|219363643|ref|NP_001136510.1| uncharacterized protein LOC100216625 [Zea mays]
gi|194688606|gb|ACF78387.1| unknown [Zea mays]
gi|223949339|gb|ACN28753.1| unknown [Zea mays]
gi|413939377|gb|AFW73928.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 280
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQE 283
+Q+ A S G + PA+ R R +R +A + H+++E+ RR RI E+MKALQ
Sbjct: 13 HQSMATVCESEDALGSSESDPAR--PARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQT 70
Query: 284 LVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
L+PN++KTDKASMLD+ I+Y+K LQLQV++LSM
Sbjct: 71 LIPNSSKTDKASMLDDAIEYLKHLQLQVQMLSM 103
>gi|413939376|gb|AFW73927.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 279
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQE 283
+Q+ A S G + PA+ R R +R +A + H+++E+ RR RI E+MKALQ
Sbjct: 13 HQSMATVCESEDALGSSESDPAR--PARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQT 70
Query: 284 LVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
L+PN++KTDKASMLD+ I+Y+K LQLQV++LSM
Sbjct: 71 LIPNSSKTDKASMLDDAIEYLKHLQLQVQMLSM 103
>gi|449531452|ref|XP_004172700.1| PREDICTED: uncharacterized protein LOC101229339 [Cucumis sativus]
Length = 379
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 59/80 (73%)
Query: 237 GGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASM 296
GG P+ R ++R ++ + H+++E+ RR RI E+MKALQ L+PN+NKTDKASM
Sbjct: 175 GGDLPEVPSSTNLPRNSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASM 234
Query: 297 LDEIIDYVKFLQLQVKVLSM 316
LDE I+Y+K LQLQV++LSM
Sbjct: 235 LDEAIEYLKQLQLQVQMLSM 254
>gi|30680903|ref|NP_849996.1| transcription factor PIF1 [Arabidopsis thaliana]
gi|119935961|gb|ABM06045.1| At2g20180 [Arabidopsis thaliana]
gi|330251884|gb|AEC06978.1| transcription factor PIF1 [Arabidopsis thaliana]
Length = 407
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++ER RR+RI ERMKALQEL+P NK+DKASMLDE I+Y+K LQLQ++++
Sbjct: 210 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMM 269
Query: 315 SM 316
SM
Sbjct: 270 SM 271
>gi|110737548|dbj|BAF00716.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 407
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++ER RR+RI ERMKALQEL+P NK+DKASMLDE I+Y+K LQLQ++++
Sbjct: 210 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMM 269
Query: 315 SM 316
SM
Sbjct: 270 SM 271
>gi|224067212|ref|XP_002302411.1| predicted protein [Populus trichocarpa]
gi|222844137|gb|EEE81684.1| predicted protein [Populus trichocarpa]
Length = 362
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER+K LQ LVPN K D ++ML+E + YV FLQLQ
Sbjct: 271 KTRATRGAATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVHYVNFLQLQ 330
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A +A
Sbjct: 331 IKLLSSDDLWMYAPLA 346
>gi|4093153|gb|AAC99771.1| phytochrome-associated protein 3 [Arabidopsis thaliana]
Length = 524
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 54/64 (84%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 339 SKRSRLAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQI 398
Query: 314 LSMS 317
+SM+
Sbjct: 399 MSMA 402
>gi|297839255|ref|XP_002887509.1| hypothetical protein ARALYDRAFT_476520 [Arabidopsis lyrata subsp.
lyrata]
gi|297333350|gb|EFH63768.1| hypothetical protein ARALYDRAFT_476520 [Arabidopsis lyrata subsp.
lyrata]
Length = 263
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 73/119 (61%), Gaps = 8/119 (6%)
Query: 233 STGGGGGGGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK 290
S+ G N ++ ++ VRARRGQATD HSIAER+RR +I ER+K LQ++VP K
Sbjct: 128 SSRRGKRSKNREEEKDREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYK 187
Query: 291 T-DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGR 348
T A+MLDEII+YV+ LQ QV+ LSM +L A++ D +SE +A R
Sbjct: 188 TMGMATMLDEIINYVQSLQNQVEFLSM-KLTAASS----YYDFNSETDAVESMQRAKAR 241
>gi|4580456|gb|AAD24380.1| unknown protein [Arabidopsis thaliana]
Length = 490
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++ER RR+RI ERMKALQEL+P NK+DKASMLDE I+Y+K LQLQ++++
Sbjct: 281 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMM 340
Query: 315 SM 316
SM
Sbjct: 341 SM 342
>gi|302142209|emb|CBI19412.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 92 KTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQ 151
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS + A +A
Sbjct: 152 IKLLSSDDMWMYAPIA 167
>gi|289540888|gb|ADD09565.1| unknown [Trifolium repens]
Length = 290
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRE+I ER++ LQ LVPN K D ++ML++ I YVKFLQLQ
Sbjct: 197 KARANRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIHYVKFLQLQ 256
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS + A +A
Sbjct: 257 IKLLSSDDMWMYAPIA 272
>gi|356534621|ref|XP_003535851.1| PREDICTED: transcription factor bHLH48-like [Glycine max]
Length = 357
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 72/119 (60%), Gaps = 13/119 (10%)
Query: 230 ASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN 289
+ +T G G + P VR RRGQATD HS+AER RRE+I RMK LQELVP N
Sbjct: 173 VAAATDESSGDGE---KLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCN 229
Query: 290 KTD-KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV-----ADMSSEGGGGGDC 342
K A +LD+II++V+ LQ +V++LSM AAV P++ + +++EG DC
Sbjct: 230 KISGTALVLDKIINHVQSLQNEVEILSMK----LAAVNPVIDFNLDSLLATEGVTPMDC 284
>gi|168023762|ref|XP_001764406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684270|gb|EDQ70673.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1015
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 54/62 (87%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+ +ER RR+RI E+M+ALQEL+PN+NKTDKASMLDE IDY+K LQLQ++++
Sbjct: 731 KRSRAAEVHNQSERRRRDRINEKMRALQELIPNSNKTDKASMLDEAIDYLKILQLQLQMM 790
Query: 315 SM 316
S+
Sbjct: 791 SI 792
>gi|30680909|ref|NP_179608.2| transcription factor PIF1 [Arabidopsis thaliana]
gi|334184322|ref|NP_001189559.1| transcription factor PIF1 [Arabidopsis thaliana]
gi|75299660|sp|Q8GZM7.1|PIF1_ARATH RecName: Full=Transcription factor PIF1; AltName: Full=Basic
helix-loop-helix protein 15; Short=AtbHLH15; Short=bHLH
15; AltName: Full=Protein PHY-INTERACTING FACTOR 1;
AltName: Full=Protein PHYTOCHROME INTERACTING FACTOR
3-LIKE 5; AltName: Full=Transcription factor EN 101;
AltName: Full=bHLH transcription factor bHLH015
gi|26051284|gb|AAN78308.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|28372351|dbj|BAC56979.1| PIF3 like basic Helix Loop Helix protein [Arabidopsis thaliana]
gi|330251883|gb|AEC06977.1| transcription factor PIF1 [Arabidopsis thaliana]
gi|330251885|gb|AEC06979.1| transcription factor PIF1 [Arabidopsis thaliana]
Length = 478
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++ER RR+RI ERMKALQEL+P NK+DKASMLDE I+Y+K LQLQ++++
Sbjct: 281 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMM 340
Query: 315 SM 316
SM
Sbjct: 341 SM 342
>gi|242074344|ref|XP_002447108.1| hypothetical protein SORBIDRAFT_06g028750 [Sorghum bicolor]
gi|241938291|gb|EES11436.1| hypothetical protein SORBIDRAFT_06g028750 [Sorghum bicolor]
Length = 188
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
RR ++ + H+ +ER RR+RI E++KALQEL+PN KTDK SMLDE IDY+K LQLQ+++
Sbjct: 15 TRRSRSAEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQM 74
Query: 314 LSMSRLGGAAAVAPLVADMS---SEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVA 370
L M + G A V P + + ++ +G+ P Q T AN Q
Sbjct: 75 LVMGK-GMAPVVPPELQQYMHYITADPAQMPPLRPSGQQPRQFQITQANP------QQRQ 127
Query: 371 KLMEEDMGSAMQYL 384
+E D S MQ L
Sbjct: 128 SNVESDFLSQMQNL 141
>gi|18396475|ref|NP_564293.1| transcription factor bHLH54 [Arabidopsis thaliana]
gi|75301354|sp|Q8LEG1.1|BH054_ARATH RecName: Full=Transcription factor bHLH54; AltName: Full=Basic
helix-loop-helix protein 54; Short=AtbHLH54; Short=bHLH
54; AltName: Full=Transcription factor EN 114; AltName:
Full=bHLH transcription factor bHLH054
gi|21553570|gb|AAM62663.1| unknown [Arabidopsis thaliana]
gi|225897974|dbj|BAH30319.1| hypothetical protein [Arabidopsis thaliana]
gi|332192750|gb|AEE30871.1| transcription factor bHLH54 [Arabidopsis thaliana]
Length = 258
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K + RA +G ATDP S+ R RRE+I ER+K LQ LVPN K D ++ML+E + YVKFLQ
Sbjct: 164 KGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 223
Query: 309 LQVKVLSMSRLGGAAAVA 326
LQ+K+LS L A +A
Sbjct: 224 LQIKLLSSDDLWMYAPLA 241
>gi|297746360|emb|CBI16416.3| unnamed protein product [Vitis vinifera]
Length = 297
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 218 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQK 277
Query: 310 QVKVLSMSR 318
QVK LS +R
Sbjct: 278 QVKTLSDNR 286
>gi|297845732|ref|XP_002890747.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297336589|gb|EFH67006.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K + RA +G ATDP S+ R RRE+I ER+K LQ LVPN K D ++ML+E + YVKFLQ
Sbjct: 164 KGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 223
Query: 309 LQVKVLSMSRLGGAAAVA 326
LQ+K+LS L A +A
Sbjct: 224 LQIKLLSSDDLWMYAPLA 241
>gi|125554209|gb|EAY99814.1| hypothetical protein OsI_21804 [Oryza sativa Indica Group]
Length = 315
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 8/102 (7%)
Query: 223 MNQTQAQASGSTGG----GGGGGNTPAQQPKQRVR----ARRGQATDPHSIAERLRRERI 274
+ Q Q G GG GG + P R R ++R +A + H+++E+ RR +I
Sbjct: 60 LGQQQVDCGGELGGFCDSEAGGSSEPEAAAGARPRGGSGSKRSRAAEVHNLSEKRRRSKI 119
Query: 275 AERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++LSM
Sbjct: 120 NEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 161
>gi|413956455|gb|AFW89104.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 239
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 189 GFTGSLHGSTQPQH-----FHHLQVRSMPGQTFGAPGPVMNQTQAQA----SGSTGGGGG 239
G SLH + FH L S+P V+ Q +A+A S
Sbjct: 82 GINSSLHSLVRKLEATVALFHRLHHTSLPLFHPTVHINVLLQDEARALLQREVSMECADE 141
Query: 240 GGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLD 298
++ VRA+RGQAT+ HS+AER RRE+I RMK LQ+LVP NK T KA MLD
Sbjct: 142 NAAGAKREDYAHVRAKRGQATNSHSLAERFRREKINVRMKLLQDLVPGCNKITGKAMMLD 201
Query: 299 EIIDYVKFLQLQVKVLSM 316
EII+YV+ LQ QV+ LSM
Sbjct: 202 EIINYVQSLQRQVEFLSM 219
>gi|289540905|gb|ADD09579.1| unknown [Trifolium repens]
Length = 276
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRE+I ER++ LQ LVPN K D ++ML++ I YVKFLQLQ
Sbjct: 183 KARANRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIHYVKFLQLQ 242
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS + A +A
Sbjct: 243 IKLLSSDDMWMYAPIA 258
>gi|55296133|dbj|BAD67851.1| basic helix-loop-helix protein SPATULA-like [Oryza sativa Japonica
Group]
gi|125596157|gb|EAZ35937.1| hypothetical protein OsJ_20240 [Oryza sativa Japonica Group]
Length = 315
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 8/102 (7%)
Query: 223 MNQTQAQASGSTGG----GGGGGNTPAQQPKQRVR----ARRGQATDPHSIAERLRRERI 274
+ Q Q G GG GG + P R R ++R +A + H+++E+ RR +I
Sbjct: 60 LGQQQVDCGGELGGFCDSEAGGSSEPEAAAGARPRGGSGSKRSRAAEVHNLSEKRRRSKI 119
Query: 275 AERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++LSM
Sbjct: 120 NEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 161
>gi|326495514|dbj|BAJ85853.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 391
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ER++ LQELVPN +K T+ A MLD +DY+K LQ
Sbjct: 306 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKELQE 365
Query: 310 QVKVLSMSR 318
QVKV++ SR
Sbjct: 366 QVKVINESR 374
>gi|297836114|ref|XP_002885939.1| basic helix-loop-helix protein [Arabidopsis lyrata subsp. lyrata]
gi|297331779|gb|EFH62198.1| basic helix-loop-helix protein [Arabidopsis lyrata subsp. lyrata]
Length = 328
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K ++ML+E + YVKFLQLQ
Sbjct: 236 KTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVHISTMLEEAVQYVKFLQLQ 295
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A +A
Sbjct: 296 IKLLSSDDLWMYAPIA 311
>gi|356536868|ref|XP_003536955.1| PREDICTED: transcription factor PIF1-like [Glycine max]
Length = 491
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%), Gaps = 4/72 (5%)
Query: 249 KQRVR----ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
K++VR +R A + H+++ER RR+RI E+MKALQEL+P NK+DKASMLDE I+Y+
Sbjct: 263 KKQVRGSTSTKRSHAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYL 322
Query: 305 KFLQLQVKVLSM 316
K LQLQV+++SM
Sbjct: 323 KSLQLQVQMMSM 334
>gi|357480671|ref|XP_003610621.1| Transcription factor bHLH85 [Medicago truncatula]
gi|355511956|gb|AES93579.1| Transcription factor bHLH85 [Medicago truncatula]
Length = 331
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ R+ RG ATDP S+ R RRERI ER+K LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 223 KSRSSRGPATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQ 282
Query: 311 VKVLS 315
+K+LS
Sbjct: 283 IKLLS 287
>gi|359480799|ref|XP_002277966.2| PREDICTED: uncharacterized protein LOC100245665 [Vitis vinifera]
gi|296082405|emb|CBI21410.3| unnamed protein product [Vitis vinifera]
Length = 394
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 55/66 (83%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
R ++R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQ
Sbjct: 132 RSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ 191
Query: 311 VKVLSM 316
V++LSM
Sbjct: 192 VQMLSM 197
>gi|390979908|gb|AFM30926.1| basic helix-loop-helix, partial [Vitis vinifera]
Length = 270
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 59/79 (74%), Gaps = 5/79 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRG+ATD HS+AER RRE+I+ERMK LQ LVP +K K +LDEII+YVK LQ Q
Sbjct: 108 VRARRGEATDSHSLAERARREKISERMKLLQSLVPGCDKLIGKTLVLDEIINYVKSLQNQ 167
Query: 311 VKVLSMSRLGGAAAVAPLV 329
V+ L +G A+++P++
Sbjct: 168 VEFL----VGKLASISPML 182
>gi|226499484|ref|NP_001146943.1| protein SPATULA [Zea mays]
gi|195605542|gb|ACG24601.1| protein SPATULA [Zea mays]
gi|414585417|tpg|DAA35988.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 1
[Zea mays]
gi|414585418|tpg|DAA35989.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 2
[Zea mays]
gi|414585419|tpg|DAA35990.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 3
[Zea mays]
Length = 185
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
RR ++ + H+ +ER RR++I E++KALQEL+PN NKTDK SMLDE IDY+K LQLQ+++
Sbjct: 14 TRRSRSAEFHNFSERRRRDKINEKLKALQELLPNCNKTDKVSMLDEAIDYLKSLQLQLQM 73
Query: 314 LSMSRLGGAAAVAPL 328
L M + G + V PL
Sbjct: 74 LVMGK--GMSPVVPL 86
>gi|224066527|ref|XP_002302124.1| predicted protein [Populus trichocarpa]
gi|222843850|gb|EEE81397.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+
Sbjct: 31 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 90
Query: 315 SM 316
M
Sbjct: 91 WM 92
>gi|147802826|emb|CAN64154.1| hypothetical protein VITISV_000192 [Vitis vinifera]
Length = 270
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 59/79 (74%), Gaps = 5/79 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRG+ATD HS+AER RRE+I+ERMK LQ LVP +K K +LDEII+YVK LQ Q
Sbjct: 108 VRARRGEATDSHSLAERARREKISERMKLLQSLVPGCDKIIGKTLVLDEIINYVKSLQNQ 167
Query: 311 VKVLSMSRLGGAAAVAPLV 329
V+ L +G A+++P++
Sbjct: 168 VEFL----VGKLASISPML 182
>gi|357148389|ref|XP_003574744.1| PREDICTED: transcription factor bHLH130-like [Brachypodium
distachyon]
Length = 377
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ER++ LQELVPN +K T+ A MLD +DY+K LQ
Sbjct: 299 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKELQE 358
Query: 310 QVKVLSMSR 318
QVKV++ SR
Sbjct: 359 QVKVINESR 367
>gi|357141712|ref|XP_003572320.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 327
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRAR QAT+ HSIAE+LRRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 148 VRARSEQATNSHSIAEKLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 207
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 208 VEFLSM 213
>gi|392513513|emb|CCE46185.1| bHLH transcription factor [Amborella trichopoda]
Length = 445
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 54/66 (81%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
R +R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQ
Sbjct: 177 RSSTKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ 236
Query: 311 VKVLSM 316
V++LSM
Sbjct: 237 VQMLSM 242
>gi|225425220|ref|XP_002267465.1| PREDICTED: transcription factor bHLH76-like [Vitis vinifera]
Length = 270
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 59/79 (74%), Gaps = 5/79 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRG+ATD HS+AER RRE+I+ERMK LQ LVP +K K +LDEII+YVK LQ Q
Sbjct: 108 VRARRGEATDSHSLAERARREKISERMKFLQSLVPGCDKIIGKTLVLDEIINYVKSLQNQ 167
Query: 311 VKVLSMSRLGGAAAVAPLV 329
V+ L +G A+++P++
Sbjct: 168 VEFL----VGKLASISPML 182
>gi|356498448|ref|XP_003518064.1| PREDICTED: transcription factor bHLH48-like [Glycine max]
Length = 354
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 66/101 (65%), Gaps = 10/101 (9%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKF 306
P VR RRGQATD HS+AER RRE+I RMK LQELVP NK A +LD+II++V+
Sbjct: 184 PYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQS 243
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV-----ADMSSEGGGGGDC 342
LQ +V++LSM AAV P++ + +++EG DC
Sbjct: 244 LQNEVEILSMK----LAAVNPVIDFNLDSLLATEGVTPMDC 280
>gi|222080623|gb|ACM41588.1| bHLH transcription factor MYC5 [Catharanthus roseus]
Length = 321
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 58/73 (79%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA+ R ++R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y
Sbjct: 132 PAKPTTSRNPSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEY 191
Query: 304 VKFLQLQVKVLSM 316
+K LQLQV++L+M
Sbjct: 192 LKQLQLQVQMLTM 204
>gi|357129887|ref|XP_003566591.1| PREDICTED: transcription factor PIF1-like [Brachypodium distachyon]
Length = 448
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%), Gaps = 2/72 (2%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+RG+ + H+++ER RR+RI E+M+ALQEL+PN NK DKASML+E I+Y+K LQLQV++
Sbjct: 266 KRGRTAEVHNMSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQM- 324
Query: 315 SMSRLGGAAAVA 326
MS +G AAA A
Sbjct: 325 -MSSMGPAAAAA 335
>gi|357165982|ref|XP_003580559.1| PREDICTED: transcription factor PIF1-like [Brachypodium distachyon]
Length = 198
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR ++ D H+ +ER RR+RI E++KALQEL+PN KTDK SMLDE IDY+K LQLQ+++L
Sbjct: 17 RRSRSADFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQML 76
Query: 315 SMSRLGGAAAVAP 327
M + G A V P
Sbjct: 77 VMGK--GMAPVVP 87
>gi|413956454|gb|AFW89103.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 263
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 189 GFTGSLHGSTQPQH-----FHHLQVRSMPGQTFGAPGPVMNQTQAQA----SGSTGGGGG 239
G SLH + FH L S+P V+ Q +A+A S
Sbjct: 82 GINSSLHSLVRKLEATVALFHRLHHTSLPLFHPTVHINVLLQDEARALLQREVSMECADE 141
Query: 240 GGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLD 298
++ VRA+RGQAT+ HS+AER RRE+I RMK LQ+LVP NK T KA MLD
Sbjct: 142 NAAGAKREDYAHVRAKRGQATNSHSLAERFRREKINVRMKLLQDLVPGCNKITGKAMMLD 201
Query: 299 EIIDYVKFLQLQVKVLSM 316
EII+YV+ LQ QV+ LSM
Sbjct: 202 EIINYVQSLQRQVEFLSM 219
>gi|356545930|ref|XP_003541386.1| PREDICTED: transcription factor PIF1-like [Glycine max]
Length = 476
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++ER RR+RI E+MKALQEL+P NK+DKASMLDE I+Y+K LQLQV+++
Sbjct: 260 KRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMM 319
Query: 315 SM 316
SM
Sbjct: 320 SM 321
>gi|56784181|dbj|BAD81566.1| putative BP-5 protein [Oryza sativa Japonica Group]
Length = 565
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQRVRA-RRGQATDPHSIAERLRRERIAERMKALQE 283
+ QAQA S + P K R+ +R + + H+++ER RR+RI E+M+ALQE
Sbjct: 278 KCQAQAECSASQDDDLDDEPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQE 337
Query: 284 LVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
L+PN NK DKASMLDE I+Y+K LQLQV+++SM G + P++
Sbjct: 338 LIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSM---GTGLCIPPML 380
>gi|255547289|ref|XP_002514702.1| DNA binding protein, putative [Ricinus communis]
gi|223546306|gb|EEF47808.1| DNA binding protein, putative [Ricinus communis]
Length = 440
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
Query: 211 MPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRA---RRGQATDPHSIAE 267
M +F +P P + ++ GG + + + VR+ RR +A H+ +E
Sbjct: 197 MTWASFESPPPSLKAKTTDEDSASHGGSENQDEDRETKTETVRSHSSRRTRAAAVHNQSE 256
Query: 268 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
R RR+RI ++MKALQ+LVPNA+KTDKASMLDE+I+Y+K LQ QV+ +S+ +
Sbjct: 257 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIEYLKQLQAQVQAMSVRNM 308
>gi|11761480|gb|AAG28811.2|AC079374_14 helix-loop-helix protein homolog, putative [Arabidopsis thaliana]
Length = 166
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 61/86 (70%), Gaps = 4/86 (4%)
Query: 246 QQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
Q+PK VRA+RGQATD HS+AER+RRE+I ER+K LQ+LVP K A MLD IID
Sbjct: 39 QKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIID 98
Query: 303 YVKFLQLQVKVLSMSRLGGAAAVAPL 328
YV+ LQ Q++ LSM +L A+A L
Sbjct: 99 YVRSLQNQIEFLSM-KLSAASACYDL 123
>gi|242066894|ref|XP_002454736.1| hypothetical protein SORBIDRAFT_04g036450 [Sorghum bicolor]
gi|241934567|gb|EES07712.1| hypothetical protein SORBIDRAFT_04g036450 [Sorghum bicolor]
Length = 277
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQE 283
+Q+ A S G + PA+ R R +R +A + H+++E+ RR RI E+MKALQ
Sbjct: 14 HQSMATVYESEDALGSSESDPAR--PARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQT 71
Query: 284 LVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
L+PN++KTDKASMLD+ I+Y+K LQLQV++LSM
Sbjct: 72 LIPNSSKTDKASMLDDAIEYLKQLQLQVQMLSM 104
>gi|449468728|ref|XP_004152073.1| PREDICTED: transcription factor PIF1-like [Cucumis sativus]
Length = 553
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 52/62 (83%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++ER RR+RI E+MKALQEL+P NK DKASMLDE I+Y+K LQLQV+++
Sbjct: 302 KRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKADKASMLDEAIEYLKTLQLQVQMM 361
Query: 315 SM 316
SM
Sbjct: 362 SM 363
>gi|449515805|ref|XP_004164938.1| PREDICTED: transcription factor PIF1-like [Cucumis sativus]
Length = 549
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 52/62 (83%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++ER RR+RI E+MKALQEL+P NK DKASMLDE I+Y+K LQLQV+++
Sbjct: 298 KRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKADKASMLDEAIEYLKTLQLQVQMM 357
Query: 315 SM 316
SM
Sbjct: 358 SM 359
>gi|168024073|ref|XP_001764561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684139|gb|EDQ70543.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 62
Score = 87.4 bits (215), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/62 (70%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP K T KA MLDEII+YV+ LQ Q
Sbjct: 1 VRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCRKVTGKAVMLDEIINYVQSLQRQ 60
Query: 311 VK 312
V+
Sbjct: 61 VE 62
>gi|297797231|ref|XP_002866500.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297312335|gb|EFH42759.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 282
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+E+M ALQ+++P NK KA +LDEII+Y++ LQ Q
Sbjct: 154 VRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQ 213
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 214 VEFLSM 219
>gi|15241896|ref|NP_201067.1| transcription factor bHLH79 [Arabidopsis thaliana]
gi|75311612|sp|Q9LV17.1|BH079_ARATH RecName: Full=Transcription factor bHLH79; AltName: Full=Basic
helix-loop-helix protein 79; Short=AtbHLH79; Short=bHLH
79; AltName: Full=Transcription factor EN 81; AltName:
Full=bHLH transcription factor bHLH079
gi|8809657|dbj|BAA97208.1| unnamed protein product [Arabidopsis thaliana]
gi|18175779|gb|AAL59926.1| unknown protein [Arabidopsis thaliana]
gi|21536811|gb|AAM61143.1| unknown [Arabidopsis thaliana]
gi|21689825|gb|AAM67556.1| unknown protein [Arabidopsis thaliana]
gi|332010247|gb|AED97630.1| transcription factor bHLH79 [Arabidopsis thaliana]
Length = 281
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+E+M ALQ+++P NK KA +LDEII+Y++ LQ Q
Sbjct: 153 VRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQ 212
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 213 VEFLSM 218
>gi|296088166|emb|CBI35658.3| unnamed protein product [Vitis vinifera]
Length = 204
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 59/79 (74%), Gaps = 5/79 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRG+ATD HS+AER RRE+I+ERMK LQ LVP +K K +LDEII+YVK LQ Q
Sbjct: 42 VRARRGEATDSHSLAERARREKISERMKFLQSLVPGCDKIIGKTLVLDEIINYVKSLQNQ 101
Query: 311 VKVLSMSRLGGAAAVAPLV 329
V+ L +G A+++P++
Sbjct: 102 VEFL----VGKLASISPML 116
>gi|222618221|gb|EEE54353.1| hypothetical protein OsJ_01348 [Oryza sativa Japonica Group]
Length = 705
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQRVRA-RRGQATDPHSIAERLRRERIAERMKALQ 282
+ QAQA S + P K R+ +R + + H+++ER RR+RI E+M+ALQ
Sbjct: 417 RKCQAQAECSASQDDDLDDEPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQ 476
Query: 283 ELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
EL+PN NK DKASMLDE I+Y+K LQLQV+++SM G + P++
Sbjct: 477 ELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSM---GTGLCIPPML 520
>gi|297596562|ref|NP_001042775.2| Os01g0286100 [Oryza sativa Japonica Group]
gi|215717101|dbj|BAG95464.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673123|dbj|BAF04689.2| Os01g0286100 [Oryza sativa Japonica Group]
Length = 637
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV+++
Sbjct: 381 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMM 440
Query: 315 SMSRLGGAAAVAPLV 329
SM G + P++
Sbjct: 441 SM---GTGLCIPPML 452
>gi|168024155|ref|XP_001764602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684180|gb|EDQ70584.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 801
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 54/62 (87%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+ +ER RR+RI E+M+ALQEL+PN+NKTDKASMLDE I+Y+K LQLQ++++
Sbjct: 592 KRSRAAEVHNQSERRRRDRINEKMRALQELIPNSNKTDKASMLDEAIEYLKMLQLQLQMM 651
Query: 315 SM 316
S+
Sbjct: 652 SI 653
>gi|357128032|ref|XP_003565680.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF3-like
[Brachypodium distachyon]
Length = 614
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV+++
Sbjct: 402 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMM 461
Query: 315 SMSRLGGAAAVAPLV 329
SM G + P++
Sbjct: 462 SM---GTGLCIPPML 473
>gi|226502090|ref|NP_001146660.1| uncharacterized protein LOC100280260 [Zea mays]
gi|219888217|gb|ACL54483.1| unknown [Zea mays]
gi|414868921|tpg|DAA47478.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 397
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 60/79 (75%), Gaps = 3/79 (3%)
Query: 247 QPKQRVR-ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVK 305
+P QR A+R +A H+++ER RR+RI E+MKALQEL+P+ NK DKASMLDE I+Y+K
Sbjct: 239 EPAQRTTTAKRRRAAQVHNLSERRRRDRINEKMKALQELIPHCNKADKASMLDEAIEYLK 298
Query: 306 FLQLQVKVLSMSRLGGAAA 324
LQLQ++V+ M GG AA
Sbjct: 299 SLQLQLQVVWMG--GGIAA 315
>gi|115479871|ref|NP_001063529.1| Os09g0487900 [Oryza sativa Japonica Group]
gi|113631762|dbj|BAF25443.1| Os09g0487900 [Oryza sativa Japonica Group]
Length = 401
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ER++ LQELVPN K T+ A MLD +DY+K LQ
Sbjct: 318 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQK 377
Query: 310 QVKVLSMSR 318
QVKVL+ SR
Sbjct: 378 QVKVLNDSR 386
>gi|218188008|gb|EEC70435.1| hypothetical protein OsI_01449 [Oryza sativa Indica Group]
Length = 693
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQRVRA-RRGQATDPHSIAERLRRERIAERMKALQ 282
+ QAQA S + P K R+ +R + + H+++ER RR+RI E+M+ALQ
Sbjct: 405 RKCQAQAECSASQDDDLDDEPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQ 464
Query: 283 ELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
EL+PN NK DKASMLDE I+Y+K LQLQV+++SM G + P++
Sbjct: 465 ELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSM---GTGLCIPPML 508
>gi|449437603|ref|XP_004136581.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus]
gi|449522885|ref|XP_004168456.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus]
Length = 366
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
R+RA+RG AT P SIAER+RR RI+ERM+ LQ+LVPN +K T+ A MLD +DY+K LQ
Sbjct: 281 RIRAKRGCATHPRSIAERVRRTRISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKELQK 340
Query: 310 QVKVLSMSR 318
Q K LS +R
Sbjct: 341 QFKTLSDNR 349
>gi|115455729|ref|NP_001051465.1| Os03g0782500 [Oryza sativa Japonica Group]
gi|108711401|gb|ABF99196.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|108711403|gb|ABF99198.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113549936|dbj|BAF13379.1| Os03g0782500 [Oryza sativa Japonica Group]
gi|215740666|dbj|BAG97322.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 410
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 54/63 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKAS+LDE I+Y+K LQ+QV+++
Sbjct: 217 RRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIM 276
Query: 315 SMS 317
M+
Sbjct: 277 WMT 279
>gi|357437785|ref|XP_003589168.1| Transcription factor SPATULA [Medicago truncatula]
gi|355478216|gb|AES59419.1| Transcription factor SPATULA [Medicago truncatula]
Length = 287
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Query: 231 SGSTGGGGGGGNTPAQQ--PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA 288
S S+ G P+ + P R ++R +A + H+++E+ RR +I E++KALQ L+PN+
Sbjct: 62 SSSSAQNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNS 121
Query: 289 NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 320
NKTDKASMLDE I+Y+K LQLQV++L M R G
Sbjct: 122 NKTDKASMLDEAIEYLKQLQLQVQML-MVRNG 152
>gi|218193849|gb|EEC76276.1| hypothetical protein OsI_13762 [Oryza sativa Indica Group]
Length = 505
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 54/63 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKAS+LDE I+Y+K LQ+QV+++
Sbjct: 333 RRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIM 392
Query: 315 SMS 317
M+
Sbjct: 393 WMT 395
>gi|108711402|gb|ABF99197.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 421
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 54/63 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKAS+LDE I+Y+K LQ+QV+++
Sbjct: 228 RRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIM 287
Query: 315 SMS 317
M+
Sbjct: 288 WMT 290
>gi|255565242|ref|XP_002523613.1| conserved hypothetical protein [Ricinus communis]
gi|223537175|gb|EEF38808.1| conserved hypothetical protein [Ricinus communis]
Length = 406
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 55/66 (83%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
R ++R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQ
Sbjct: 154 RSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ 213
Query: 311 VKVLSM 316
V++LS+
Sbjct: 214 VQMLSL 219
>gi|297605234|ref|NP_001056902.2| Os06g0164400 [Oryza sativa Japonica Group]
gi|255676746|dbj|BAF18816.2| Os06g0164400, partial [Oryza sativa Japonica Group]
Length = 188
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 60/83 (72%), Gaps = 4/83 (4%)
Query: 238 GGGGNTPAQQPKQRVR----ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDK 293
GG + P R R ++R +A + H+++E+ RR +I E+MKALQ L+PN+NKTDK
Sbjct: 2 AGGSSEPEAAAGARPRGGSGSKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDK 61
Query: 294 ASMLDEIIDYVKFLQLQVKVLSM 316
ASMLDE I+Y+K LQLQV++LSM
Sbjct: 62 ASMLDEAIEYLKQLQLQVQMLSM 84
>gi|125564183|gb|EAZ09563.1| hypothetical protein OsI_31842 [Oryza sativa Indica Group]
Length = 400
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ER++ LQELVPN K T+ A MLD +DY+K LQ
Sbjct: 317 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQK 376
Query: 310 QVKVLSMSR 318
QVKVL+ SR
Sbjct: 377 QVKVLNDSR 385
>gi|224129878|ref|XP_002320693.1| predicted protein [Populus trichocarpa]
gi|222861466|gb|EEE99008.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 51/74 (68%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER+K LQ +VPN K D ++ML+E + YVKFLQLQ
Sbjct: 269 KTRASRGAATDPQSLYARKRRERINERLKILQHIVPNGTKVDISTMLEEAVHYVKFLQLQ 328
Query: 311 VKVLSMSRLGGAAA 324
+KV ++ AA
Sbjct: 329 IKVKALVNFFLHAA 342
>gi|224130812|ref|XP_002320931.1| predicted protein [Populus trichocarpa]
gi|222861704|gb|EEE99246.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 67/95 (70%), Gaps = 10/95 (10%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +AT+ H+++ER RR+RI ++M+ALQ+L+PN+NK DKASML E IDY+K LQLQV++
Sbjct: 371 SKRRRATEIHNLSERKRRDRINKKMRALQDLIPNSNKVDKASMLGEAIDYLKSLQLQVQM 430
Query: 314 LSM-SRL---------GGAAAVAPLVADMSSEGGG 338
+SM +RL G APL+A S G G
Sbjct: 431 MSMGTRLCMPLMMLPTGMQHIHAPLLAQFSPMGVG 465
>gi|222625912|gb|EEE60044.1| hypothetical protein OsJ_12829 [Oryza sativa Japonica Group]
Length = 489
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 54/63 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKAS+LDE I+Y+K LQ+QV+++
Sbjct: 317 RRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIM 376
Query: 315 SMS 317
M+
Sbjct: 377 WMT 379
>gi|118486519|gb|ABK95099.1| unknown [Populus trichocarpa]
Length = 561
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 67/95 (70%), Gaps = 10/95 (10%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +AT+ H+++ER RR+RI ++M+ALQ+L+PN+NK DKASML E IDY+K LQLQV++
Sbjct: 377 SKRRRATEIHNLSERKRRDRINKKMRALQDLIPNSNKVDKASMLGEAIDYLKSLQLQVQM 436
Query: 314 LSM-SRL---------GGAAAVAPLVADMSSEGGG 338
+SM +RL G APL+A S G G
Sbjct: 437 MSMGTRLCMPLMMLPTGMQHIHAPLLAQFSPMGVG 471
>gi|115489518|ref|NP_001067246.1| Os12g0610200 [Oryza sativa Japonica Group]
gi|77556567|gb|ABA99363.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|108862946|gb|ABA99364.2| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113649753|dbj|BAF30265.1| Os12g0610200 [Oryza sativa Japonica Group]
gi|125537356|gb|EAY83844.1| hypothetical protein OsI_39060 [Oryza sativa Indica Group]
gi|215694924|dbj|BAG90115.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 445
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Query: 243 TPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIID 302
+PAQ+ A+R +A + H+++ER RR+RI E+MKALQEL+P+ NKTDKASMLDE I+
Sbjct: 257 SPAQK---TTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIE 313
Query: 303 YVKFLQLQVKVLSM 316
Y+K LQLQ++++ M
Sbjct: 314 YLKSLQLQLQMMWM 327
>gi|31043851|emb|CAD32238.1| BP-5 protein [Oryza sativa]
Length = 335
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 20/103 (19%)
Query: 234 TGGGGGGGNTPAQQPKQRVR------------------ARRGQATDPHSIAERLRRERIA 275
TG G+TP + P+ R ARR +A + H+++ER RR+RI
Sbjct: 124 TGAASASGSTPPRTPRAPARTRSRSRLVARKPPAKMTTARRSRAAEVHNLSERRRRDRIN 183
Query: 276 ERMKALQEL--VPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
E+M+ALQEL +P+ NKTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 184 EKMRALQELELIPHCNKTDKASMLDEAIEYLKSLQLQLRVMWM 226
>gi|224066981|ref|XP_002302310.1| hypothetical protein POPTRDRAFT_754747 [Populus trichocarpa]
gi|222844036|gb|EEE81583.1| hypothetical protein POPTRDRAFT_754747 [Populus trichocarpa]
Length = 309
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQEL 284
Q + AS N+ + VRAR+GQATD HS+ ER+RRE+I+ERMK LQ L
Sbjct: 105 QKRCWASMFVSDIQNKANSKPPEDYIHVRARKGQATDSHSLVERVRREKISERMKLLQNL 164
Query: 285 VPNANK-TDKASMLDEIIDYVKFLQLQVKV 313
VP NK T KA MLDEII+YV+ LQ QV+V
Sbjct: 165 VPGCNKVTGKAFMLDEIINYVQSLQRQVEV 194
>gi|125606147|gb|EAZ45183.1| hypothetical protein OsJ_29826 [Oryza sativa Japonica Group]
Length = 379
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ER++ LQELVPN K T+ A MLD +DY+K LQ
Sbjct: 296 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQK 355
Query: 310 QVKVLSMSR 318
QVKVL+ SR
Sbjct: 356 QVKVLNDSR 364
>gi|326511035|dbj|BAJ91865.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 296
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 57/70 (81%)
Query: 247 QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKF 306
+P R R +R +A + H+++E+ RR +I E+MKALQ LVPN++KTDKASMLD+ I+Y+K
Sbjct: 39 EPAGRPRGKRARAAEVHNLSEKRRRCKINEKMKALQSLVPNSSKTDKASMLDDAIEYLKH 98
Query: 307 LQLQVKVLSM 316
LQLQV++LSM
Sbjct: 99 LQLQVQMLSM 108
>gi|108862947|gb|ABA99362.2| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 446
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Query: 243 TPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIID 302
+PAQ+ A+R +A + H+++ER RR+RI E+MKALQEL+P+ NKTDKASMLDE I+
Sbjct: 257 SPAQK---TTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIE 313
Query: 303 YVKFLQLQVKVLSM 316
Y+K LQLQ++++ M
Sbjct: 314 YLKSLQLQLQMMWM 327
>gi|297824189|ref|XP_002879977.1| hypothetical protein ARALYDRAFT_483321 [Arabidopsis lyrata subsp.
lyrata]
gi|297325816|gb|EFH56236.1| hypothetical protein ARALYDRAFT_483321 [Arabidopsis lyrata subsp.
lyrata]
Length = 326
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 60/83 (72%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKF 306
P VRARRGQATD HS+AER RRE+I RMK LQELVP +K A +LDEII++V+
Sbjct: 180 PYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQS 239
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ QV++LSM RL AAV P V
Sbjct: 240 LQRQVEMLSM-RL---AAVNPRV 258
>gi|357440189|ref|XP_003590372.1| Transcription factor BEE [Medicago truncatula]
gi|355479420|gb|AES60623.1| Transcription factor BEE [Medicago truncatula]
Length = 326
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 58/83 (69%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKF 306
P VR RRGQATD HS+AER RRE+I RMK LQELVP NK A +LD+II++V+
Sbjct: 156 PYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQS 215
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ +V++LSM AAV P++
Sbjct: 216 LQHEVEILSMK----LAAVNPII 234
>gi|242042934|ref|XP_002459338.1| hypothetical protein SORBIDRAFT_02g002760 [Sorghum bicolor]
gi|241922715|gb|EER95859.1| hypothetical protein SORBIDRAFT_02g002760 [Sorghum bicolor]
Length = 446
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI E+M+ALQELVP+ NKTDKAS+LDE I+Y+K LQ+QV+++
Sbjct: 245 RRTRAAEVHNMSERRRRDRINEKMRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIM 304
Query: 315 SMS 317
MS
Sbjct: 305 WMS 307
>gi|218187227|gb|EEC69654.1| hypothetical protein OsI_39066 [Oryza sativa Indica Group]
Length = 469
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Query: 243 TPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIID 302
+PAQ+ A+R +A + H+++ER RR+RI E+MKALQEL+P+ NKTDKASMLDE I+
Sbjct: 266 SPAQK---TTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIE 322
Query: 303 YVKFLQLQVKVLSM 316
Y+K LQLQ++++ M
Sbjct: 323 YLKSLQLQLQMMWM 336
>gi|307135852|gb|ADN33721.1| serine/threonine-protein kinase [Cucumis melo subsp. melo]
Length = 842
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 59/80 (73%)
Query: 237 GGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASM 296
GG P+ R ++R ++ + H+++E+ RR RI E+MKALQ L+PN+NKTDKASM
Sbjct: 175 GGDLPEVPSSTDLPRNSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASM 234
Query: 297 LDEIIDYVKFLQLQVKVLSM 316
LDE I+Y+K LQLQV++LSM
Sbjct: 235 LDEAIEYLKQLQLQVQMLSM 254
>gi|195639614|gb|ACG39275.1| hypothetical protein [Zea mays]
Length = 282
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 55/66 (83%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
R R +R +A + H+++E+ RR RI E+MKALQ L+PN++KTDKASMLD+ I+Y+K LQLQ
Sbjct: 40 RPRGKRSRAAEVHNLSEKRRRSRINEKMKALQTLIPNSSKTDKASMLDDAIEYLKHLQLQ 99
Query: 311 VKVLSM 316
V++LSM
Sbjct: 100 VQMLSM 105
>gi|326497797|dbj|BAK05983.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 386
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++L
Sbjct: 159 KRTRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQML 218
Query: 315 SM 316
SM
Sbjct: 219 SM 220
>gi|356505096|ref|XP_003521328.1| PREDICTED: transcription factor PIF1-like [Glycine max]
Length = 517
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 52/62 (83%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++ER RR+RI E+MKALQEL+P NK+DKASMLDE I Y+K LQLQV+++
Sbjct: 305 KRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMM 364
Query: 315 SM 316
SM
Sbjct: 365 SM 366
>gi|242037911|ref|XP_002466350.1| hypothetical protein SORBIDRAFT_01g006190 [Sorghum bicolor]
gi|241920204|gb|EER93348.1| hypothetical protein SORBIDRAFT_01g006190 [Sorghum bicolor]
Length = 424
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 54/63 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKAS+LDE I+Y+K LQ+QV+++
Sbjct: 227 RRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDETIEYLKSLQMQVQIM 286
Query: 315 SMS 317
M+
Sbjct: 287 WMT 289
>gi|30688981|ref|NP_850368.1| transcription factor bHLH48 [Arabidopsis thaliana]
gi|75304461|sp|Q8VZ02.1|BH048_ARATH RecName: Full=Transcription factor bHLH48; AltName: Full=Basic
helix-loop-helix protein 48; Short=AtbHLH48; Short=bHLH
48; AltName: Full=Transcription factor EN 97; AltName:
Full=bHLH transcription factor bHLH048
gi|17529250|gb|AAL38852.1| unknown protein [Arabidopsis thaliana]
gi|20465971|gb|AAM20171.1| unknown protein [Arabidopsis thaliana]
gi|51971465|dbj|BAD44397.1| putative bHLH transcription factor (bHLH048) [Arabidopsis thaliana]
gi|330255008|gb|AEC10102.1| transcription factor bHLH48 [Arabidopsis thaliana]
Length = 327
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKF 306
P VRARRGQATD HS+AER RRE+I RMK LQELVP +K A +LDEII++V+
Sbjct: 181 PYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQT 240
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ QV++LSM RL AAV P +
Sbjct: 241 LQRQVEMLSM-RL---AAVNPRI 259
>gi|312281897|dbj|BAJ33814.1| unnamed protein product [Thellungiella halophila]
Length = 375
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKF 306
P VRARRGQATD HS+AER RRE+I RMK LQELVP +K A +LDEII++V+
Sbjct: 196 PYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQS 255
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ QV++LSM RL AAV P +
Sbjct: 256 LQRQVEMLSM-RL---AAVNPRI 274
>gi|140084327|gb|ABO84930.1| Rhd6-like 1 [Physcomitrella patens]
Length = 762
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Query: 229 QASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA 288
+ S ST G G PA + RAR+G A DP SIA R+RRERI+ER+K LQ L+PN
Sbjct: 618 KVSQSTTSGRALG--PALNTNLKPRARQGSANDPQSIAARVRRERISERLKVLQALIPNG 675
Query: 289 NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
+K D +ML++ I YV+ L+ Q+K+L L A+ PL
Sbjct: 676 DKVDMVTMLEKAISYVQCLEFQIKMLKNDSL-WPKALGPL 714
>gi|125541527|gb|EAY87922.1| hypothetical protein OsI_09345 [Oryza sativa Indica Group]
Length = 320
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 241 GNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLD 298
G++ ++QP + R R +R +A + H+++E+ RR RI E+MKALQ L+PN++KTDKASMLD
Sbjct: 35 GSSESEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKTDKASMLD 94
Query: 299 EIIDYVKFLQLQVKVLSM 316
+ I+Y+K LQLQV++LSM
Sbjct: 95 DAIEYLKQLQLQVQMLSM 112
>gi|414877117|tpg|DAA54248.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 567
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV+++
Sbjct: 349 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMM 408
Query: 315 SMSRLGGAAAVAPLV 329
+M G + P++
Sbjct: 409 AM---GSGLCIPPML 420
>gi|125584067|gb|EAZ24998.1| hypothetical protein OsJ_08778 [Oryza sativa Japonica Group]
Length = 320
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 241 GNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLD 298
G++ ++QP + R R +R +A + H+++E+ RR RI E+MKALQ L+PN++KTDKASMLD
Sbjct: 35 GSSESEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKTDKASMLD 94
Query: 299 EIIDYVKFLQLQVKVLSM 316
+ I+Y+K LQLQV++LSM
Sbjct: 95 DAIEYLKQLQLQVQMLSM 112
>gi|356509769|ref|XP_003523618.1| PREDICTED: uncharacterized protein LOC100779202 [Glycine max]
Length = 332
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 224 NQTQAQASGSTGGGGGG-----GNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERM 278
NQ + +GS G N A K + +A +G ATDP S+ R RRERI +R+
Sbjct: 207 NQAEEINAGSDGHSSSSYTREDDNASALNFKGKTKASKGSATDPQSLYARKRRERIDDRL 266
Query: 279 KALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
+ LQ LVPN K D ++ML+E + YVKFLQLQ K+LS L A +A
Sbjct: 267 RILQNLVPNGTKVDISTMLEEAVQYVKFLQLQNKLLSSDDLWMYAPIA 314
>gi|15451582|gb|AAK98706.1|AC069158_18 Putative SPATULA [Oryza sativa Japonica Group]
Length = 298
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 241 GNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLD 298
G++ ++QP + R R +R +A + H+++E+ RR RI E+MKALQ L+PN++KTDKASMLD
Sbjct: 13 GSSESEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKTDKASMLD 72
Query: 299 EIIDYVKFLQLQVKVLSM 316
+ I+Y+K LQLQV++LSM
Sbjct: 73 DAIEYLKQLQLQVQMLSM 90
>gi|20127060|gb|AAM10949.1|AF488593_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 379
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKF 306
P VRARRGQATD HS+AER RRE+I RMK LQELVP +K A +LDEII++V+
Sbjct: 200 PYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQS 259
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ QV++LSM RL AAV P +
Sbjct: 260 LQRQVEMLSM-RL---AAVNPRI 278
>gi|449520908|ref|XP_004167474.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 341
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 4/81 (4%)
Query: 240 GGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKAS 295
GG+ Q PK+ V+ARRG+A + HS+AER+RRE+I+ERMK LQ+LVP ++ T K
Sbjct: 190 GGSQNVQAPKENYIHVQARRGRAANNHSLAERVRREKISERMKLLQQLVPGCHQITGKTV 249
Query: 296 MLDEIIDYVKFLQLQVKVLSM 316
+LDEII+YV+ LQ QV++LSM
Sbjct: 250 VLDEIINYVQSLQQQVELLSM 270
>gi|30695836|ref|NP_850745.1| transcription factor bHLH60 [Arabidopsis thaliana]
gi|6729523|emb|CAB67608.1| putative protein [Arabidopsis thaliana]
gi|22655000|gb|AAM98091.1| AT3g57800/T10K17_10 [Arabidopsis thaliana]
gi|27764962|gb|AAO23602.1| AT3g57800/T10K17_10 [Arabidopsis thaliana]
gi|332646182|gb|AEE79703.1| transcription factor bHLH60 [Arabidopsis thaliana]
Length = 379
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKF 306
P VRARRGQATD HS+AER RRE+I RMK LQELVP +K A +LDEII++V+
Sbjct: 200 PYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQS 259
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ QV++LSM RL AAV P +
Sbjct: 260 LQRQVEMLSM-RL---AAVNPRI 278
>gi|414877115|tpg|DAA54246.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 377
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV+++
Sbjct: 159 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMM 218
Query: 315 SMSRLGGAAAVAPLV 329
+M G + P++
Sbjct: 219 AM---GSGLCIPPML 230
>gi|22327541|ref|NP_680385.1| transcription factor bHLH139 [Arabidopsis thaliana]
gi|122213858|sp|Q3E7L7.1|BH139_ARATH RecName: Full=Transcription factor bHLH139; AltName: Full=Basic
helix-loop-helix protein 139; Short=AtbHLH139;
Short=bHLH 139; AltName: Full=Transcription factor EN
116; AltName: Full=bHLH transcription factor bHLH139
gi|332007536|gb|AED94919.1| transcription factor bHLH139 [Arabidopsis thaliana]
Length = 223
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K++ +A RG A+DP S+ R RRERI +R+K LQ LVPN K D ++ML++ + YVKFLQ
Sbjct: 129 KRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQ 188
Query: 309 LQVKVLSMSRLGGAAAVA 326
LQ+K+LS L A +A
Sbjct: 189 LQIKLLSSEDLWMYAPLA 206
>gi|6166283|gb|AAF04760.1|AF103808_1 helix-loop-helix protein 1A [Pinus taeda]
Length = 551
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 55/70 (78%), Gaps = 2/70 (2%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK--TDKASMLDEIIDYVKFLQ 308
+VRA+RG AT P SIAER+RR RI+ERM+ LQELVPN++K + A MLDE ++YVK LQ
Sbjct: 467 KVRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNSDKQTVNIADMLDEAVEYVKSLQ 526
Query: 309 LQVKVLSMSR 318
QV+ L+ +R
Sbjct: 527 KQVQELAENR 536
>gi|168024075|ref|XP_001764562.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684140|gb|EDQ70544.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 118
Score = 86.3 bits (212), Expect = 3e-14, Method: Composition-based stats.
Identities = 54/95 (56%), Positives = 66/95 (69%), Gaps = 9/95 (9%)
Query: 246 QQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEII 301
Q PKQ VRARRGQAT+ HS+AER RRE+I+ RMK LQ LVP ++ T KA ML+EII
Sbjct: 10 QPPKQGFIHVRARRGQATNSHSLAERARREKISNRMKFLQALVPGCSEVTGKAVMLEEII 69
Query: 302 DYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEG 336
+YVK LQ Q++ LSM AAV P + D + EG
Sbjct: 70 NYVKSLQRQIEFLSMK----LAAVDPRL-DTNVEG 99
>gi|255583282|ref|XP_002532405.1| DNA binding protein, putative [Ricinus communis]
gi|223527901|gb|EEF29990.1| DNA binding protein, putative [Ricinus communis]
Length = 355
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD +DY+K LQ
Sbjct: 270 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 329
Query: 310 QVKVLSMSR 318
Q K LS +R
Sbjct: 330 QYKTLSDNR 338
>gi|168048993|ref|XP_001776949.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671650|gb|EDQ58198.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 517
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 58/77 (75%), Gaps = 3/77 (3%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
R RA+RG AT P SIAER+RR +I+ERMK LQ+LVP+ +K T+ + MLDE ++YVK LQ
Sbjct: 382 RTRAKRGCATHPRSIAERVRRTKISERMKKLQDLVPSMDKQTNTSDMLDETVEYVKSLQR 441
Query: 310 QVKVLS--MSRLGGAAA 324
QV+ LS + RL AAA
Sbjct: 442 QVQELSDTVVRLEAAAA 458
>gi|363808336|ref|NP_001242250.1| transcription factor bHLH48-like [Glycine max]
gi|256002927|gb|ACU52707.1| bHLH transcription factor PTF1 [Glycine max]
Length = 366
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 65/106 (61%), Gaps = 11/106 (10%)
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQEL 284
+ + A+ T G G + P VR RRGQATD HS+AER RRE+I RMK LQEL
Sbjct: 179 KKRKSAADETSGDG------EKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQEL 232
Query: 285 VPNANKTDKASM-LDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
VP +K +M LDEII++V+ LQ QV++LSM AAV P +
Sbjct: 233 VPGCDKISGTAMVLDEIINHVQSLQRQVEILSMK----LAAVNPRI 274
>gi|168042242|ref|XP_001773598.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675137|gb|EDQ61636.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 538
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 49/71 (69%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA + RA+RG ATDP S+ R RRE+I ER+K LQ LVPN K D +MLDE I Y
Sbjct: 434 PALNTNGKPRAKRGSATDPQSVYARHRREKINERLKNLQNLVPNGAKVDIVTMLDEAIHY 493
Query: 304 VKFLQLQVKVL 314
VKFLQ QV++L
Sbjct: 494 VKFLQTQVELL 504
>gi|414873163|tpg|DAA51720.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 523
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
Query: 247 QPKQRV-RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVK 305
+P +R RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKAS+LDE I+Y+K
Sbjct: 312 KPSRRYGTKRRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDETIEYLK 371
Query: 306 FLQLQVKVLSMS 317
LQ+QV+++ M+
Sbjct: 372 SLQMQVQIMWMT 383
>gi|224082612|ref|XP_002306764.1| predicted protein [Populus trichocarpa]
gi|222856213|gb|EEE93760.1| predicted protein [Populus trichocarpa]
Length = 380
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 240 GGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDE 299
GN P K+ RR +A + H+++ER RR+RI E+M+ALQEL+P+ KTDKASMLDE
Sbjct: 171 AGNNPT---KRSGSTRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCYKTDKASMLDE 227
Query: 300 IIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGG 339
I+Y+K LQLQ++V+ M G A + P V S G G
Sbjct: 228 AIEYLKSLQLQLQVMWMGG-GMAPMLFPGVQHFMSRMGMG 266
>gi|255560265|ref|XP_002521150.1| Phytochrome-interacting factor, putative [Ricinus communis]
gi|223539719|gb|EEF41301.1| Phytochrome-interacting factor, putative [Ricinus communis]
Length = 572
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H+++ER RR+RI E+M+ALQEL+P NK+DKASMLDE I+Y+K LQLQV+++
Sbjct: 357 KRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMM 416
Query: 315 SM 316
SM
Sbjct: 417 SM 418
>gi|449450231|ref|XP_004142867.1| PREDICTED: uncharacterized protein LOC101203008 [Cucumis sativus]
Length = 842
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 59/80 (73%)
Query: 237 GGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASM 296
GG P+ R ++R ++ + H+++E+ RR RI E+MKALQ L+PN+NKTDKASM
Sbjct: 175 GGDLPEVPSSTNLPRNSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASM 234
Query: 297 LDEIIDYVKFLQLQVKVLSM 316
LDE I+Y+K LQLQV++LSM
Sbjct: 235 LDEAIEYLKQLQLQVQMLSM 254
>gi|357119457|ref|XP_003561456.1| PREDICTED: transcription factor PIF1-like [Brachypodium distachyon]
Length = 334
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 53/63 (84%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+ +ER RR+RI E+MKALQELVP+ NK+DKAS+LDE I+Y+K LQLQV+++
Sbjct: 140 RRARAAEVHNQSERRRRDRINEKMKALQELVPHCNKSDKASILDEAIEYLKSLQLQVQIM 199
Query: 315 SMS 317
M+
Sbjct: 200 WMT 202
>gi|356553958|ref|XP_003545317.1| PREDICTED: transcription factor ALC-like [Glycine max]
Length = 181
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 53/67 (79%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
P R ++R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K L
Sbjct: 115 PPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQL 174
Query: 308 QLQVKVL 314
QLQV+ L
Sbjct: 175 QLQVQYL 181
>gi|224136007|ref|XP_002327358.1| predicted protein [Populus trichocarpa]
gi|222835728|gb|EEE74163.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI++R++ LQELVPN +K T+ A ML+E +DYVKFLQ
Sbjct: 187 KIRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVDYVKFLQR 246
Query: 310 QVKVLS 315
Q++ L+
Sbjct: 247 QIQELT 252
>gi|449445206|ref|XP_004140364.1| PREDICTED: putative transcription factor bHLH086-like [Cucumis
sativus]
Length = 284
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 222 VMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKAL 281
V N ++ +G + G A KQ+ ++ A DP SIA + RRERI+ER+K L
Sbjct: 153 VPNHKRSHTTGESSGSVCKKQCTAAPKKQKPKS--ATAKDPQSIAAKNRRERISERLKIL 210
Query: 282 QELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
QELVPN +K D +ML++ I YVKFLQLQVK+L+
Sbjct: 211 QELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEF 248
>gi|168039365|ref|XP_001772168.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676499|gb|EDQ62981.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 945
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Query: 229 QASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA 288
+ S ST G G PA + RAR+G A DP SIA R+RRERI+ER+K LQ L+PN
Sbjct: 801 KVSQSTTSGRALG--PALNTNLKPRARQGSANDPQSIAARVRRERISERLKVLQALIPNG 858
Query: 289 NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
+K D +ML++ I YV+ L+ Q+K+L L A+ PL
Sbjct: 859 DKVDMVTMLEKAISYVQCLEFQIKMLKNDSL-WPKALGPL 897
>gi|449450566|ref|XP_004143033.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 341
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 61/81 (75%), Gaps = 4/81 (4%)
Query: 240 GGNTPAQQPKQ---RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKAS 295
GG+ Q PK+ V+ARRG+A + HS+AER+RRE+I+ERMK LQ+LVP ++ T K
Sbjct: 190 GGSQNVQAPKENYIHVQARRGRAANNHSLAERVRREKISERMKLLQQLVPGCHQITGKTV 249
Query: 296 MLDEIIDYVKFLQLQVKVLSM 316
+LDEII+YV+ LQ QV+ LSM
Sbjct: 250 VLDEIINYVQSLQQQVEFLSM 270
>gi|224135389|ref|XP_002322061.1| predicted protein [Populus trichocarpa]
gi|222869057|gb|EEF06188.1| predicted protein [Populus trichocarpa]
Length = 270
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 87/172 (50%), Gaps = 31/172 (18%)
Query: 190 FTGSLHGSTQPQHFHHLQVRSMP-GQTFGAPG------------------------PVMN 224
F G+ GS P FH MP QTF P P ++
Sbjct: 66 FPGNFAGSFLPGSFHQNDQNVMPVSQTFTIPAKESEFQESKRRAMDVSESSCMNSYPRVS 125
Query: 225 QTQAQASGSTGGGGGGGNTPAQQPKQR----VRARRGQATDPHSIAERLRRERIAERMKA 280
++ ++ S+ G + ++ K R VRARRGQATD HS+AER+RR +I ER++
Sbjct: 126 ESGSKKRKSSRRGKRVKSNEEEEEKTREVVHVRARRGQATDSHSLAERVRRGKINERLRC 185
Query: 281 LQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAD 331
LQ++VP KT A MLDEII+YV+ LQ QV+ LSM +L A+ A+
Sbjct: 186 LQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSM-KLTAASTFYDFNAE 236
>gi|356537351|ref|XP_003537191.1| PREDICTED: transcription factor bHLH130-like [Glycine max]
Length = 384
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD ++Y+K LQ
Sbjct: 299 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQK 358
Query: 310 QVKVLSMSR 318
Q K LS R
Sbjct: 359 QFKTLSEKR 367
>gi|449439645|ref|XP_004137596.1| PREDICTED: transcription factor UNE10-like [Cucumis sativus]
gi|449487081|ref|XP_004157490.1| PREDICTED: transcription factor UNE10-like [Cucumis sativus]
Length = 458
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 53/63 (84%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
ARR +A H+ +ER RR+RI E+MKALQ+LVPNA+KTDKASMLDE+I+Y+K LQ QV+
Sbjct: 257 ARRSRAAAIHNQSERRRRDRINEKMKALQKLVPNASKTDKASMLDEVIEYLKQLQAQVQF 316
Query: 314 LSM 316
+S+
Sbjct: 317 MSV 319
>gi|168027850|ref|XP_001766442.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682351|gb|EDQ68770.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 879
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 52/71 (73%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA + RAR+G A DP SIA R+RRERI+ER+K LQ L+PN +K D +ML++ I Y
Sbjct: 746 PALNTNLKPRARQGSANDPQSIAARVRRERISERLKVLQALIPNGDKVDMVTMLEKAITY 805
Query: 304 VKFLQLQVKVL 314
V+ L+LQ+K+L
Sbjct: 806 VQCLELQIKML 816
>gi|356504821|ref|XP_003521193.1| PREDICTED: transcription factor bHLH48-like [Glycine max]
Length = 372
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASM-LDEIIDYVKF 306
P VR RRGQATD HS+AER RRE+I RMK LQELVP +K +M LDEII++V+
Sbjct: 202 PYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQS 261
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ QV++LSM AAV P +
Sbjct: 262 LQRQVEILSMK----LAAVNPRI 280
>gi|294462391|gb|ADE76744.1| unknown [Picea sitchensis]
Length = 222
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 62/83 (74%), Gaps = 8/83 (9%)
Query: 242 NTPAQQPKQR-------VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDK 293
N+ +PK + +R+RRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP NK T K
Sbjct: 95 NSVKDEPKNKSQKDYIHLRSRRGQATNSHSLAERVRREKISERMKVLQDLVPGCNKVTGK 154
Query: 294 ASMLDEIIDYVKFLQLQVKVLSM 316
A +L+ II+YV+ LQ QV++LS+
Sbjct: 155 ALVLENIINYVQSLQSQVEILSV 177
>gi|194706560|gb|ACF87364.1| unknown [Zea mays]
Length = 123
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 67/123 (54%), Gaps = 25/123 (20%)
Query: 373 MEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPI---------ISTSNNNNNNGN 423
MEEDMG+AMQYLQGKGLCLMP+SLA+AIS+ATCH R P+ + +
Sbjct: 1 MEEDMGTAMQYLQGKGLCLMPVSLASAISSATCHMRPPVGGPGLGVAAAAAHHMAAMRLP 60
Query: 424 PH--HNPLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSV--------------KDAASV 467
PH + P SPSMSVLT QSA NG G+ KDAASV
Sbjct: 61 PHAMNGGAGAGADAVPASPSMSVLTAQSAMAPNGAGGGTDGEGSHSQQQQRHHPKDAASV 120
Query: 468 SKP 470
SKP
Sbjct: 121 SKP 123
>gi|23495742|dbj|BAC19953.1| transcription factor BHLH9-like protein [Oryza sativa Japonica
Group]
gi|24059945|dbj|BAC21408.1| transcription factor BHLH9-like protein [Oryza sativa Japonica
Group]
Length = 417
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
P+++P + RR +A + H+++ER RR+RI E+++ALQELVP+ NKTDKAS+LDE I+Y
Sbjct: 217 PSKRPAAK---RRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEY 273
Query: 304 VKFLQLQVKVLSMS 317
+K LQ+QV+++ M+
Sbjct: 274 LKSLQMQVQIMWMT 287
>gi|359744468|gb|AEV57494.1| rice phytochrome-interacting factor 4 [Oryza sativa Japonica Group]
Length = 414
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
P+++P + RR +A + H+++ER RR+RI E+++ALQELVP+ NKTDKAS+LDE I+Y
Sbjct: 214 PSKRPAAK---RRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEY 270
Query: 304 VKFLQLQVKVLSMS 317
+K LQ+QV+++ M+
Sbjct: 271 LKSLQMQVQIMWMT 284
>gi|116785394|gb|ABK23705.1| unknown [Picea sitchensis]
Length = 333
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 53/62 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++
Sbjct: 152 SKRSRAAEVHNLSEKRRRNRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKKLQLQVQM 211
Query: 314 LS 315
LS
Sbjct: 212 LS 213
>gi|357510373|ref|XP_003625475.1| Transcription factor PIF1 [Medicago truncatula]
gi|355500490|gb|AES81693.1| Transcription factor PIF1 [Medicago truncatula]
Length = 467
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQV-KV 313
+R +A + H+++ER RR+RI E+MKALQEL+P +NK+DKASMLDE IDY+K LQLQV +V
Sbjct: 255 KRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIDYLKSLQLQVQRV 314
Query: 314 LSMSRLGGAAAVAPLV 329
M + + P++
Sbjct: 315 QLMQMMSMGCGMVPMM 330
>gi|222080621|gb|ACM41587.1| bHLH transcription factor MYC4 [Catharanthus roseus]
Length = 259
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 8/88 (9%)
Query: 236 GGGGGGNTPAQQPKQ-------RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA 288
GGG G A+ K RVRA+RG AT P SIAER+RR RI++R++ LQELVPN
Sbjct: 160 GGGISGLLDAEMDKLAEDSVLCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNM 219
Query: 289 NK-TDKASMLDEIIDYVKFLQLQVKVLS 315
+K T+ A ML+E ++YVKFLQ Q++ L+
Sbjct: 220 DKQTNTADMLEEAVEYVKFLQKQIQELT 247
>gi|312282767|dbj|BAJ34249.1| unnamed protein product [Thellungiella halophila]
Length = 363
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
+VRA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 284 KVRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQR 343
Query: 310 QVKVLSMSR 318
Q K+L+ +R
Sbjct: 344 QYKILNDNR 352
>gi|224127674|ref|XP_002329336.1| predicted protein [Populus trichocarpa]
gi|222870790|gb|EEF07921.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 209 RSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQR----VRARRGQATDPHS 264
+SM T P + + + + GG G N + K VRA+RGQATD HS
Sbjct: 101 KSMEQSTSSYISPTASTNETKKKNNLGGSKKGENKEKEGDKAEEVIHVRAKRGQATDSHS 160
Query: 265 IAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAA 323
IAER+RRE+I +++ LQ+LVP +++ A ML+EII+YV LQ QV+ LSM L A+
Sbjct: 161 IAERVRREKINNKLRCLQDLVPGCHRSMGMAVMLEEIINYVHSLQNQVEFLSME-LAAAS 219
Query: 324 A 324
+
Sbjct: 220 S 220
>gi|218199079|gb|EEC81506.1| hypothetical protein OsI_24867 [Oryza sativa Indica Group]
Length = 593
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
P+++P + RR +A + H+++ER RR+RI E+++ALQELVP+ NKTDKAS+LDE I+Y
Sbjct: 393 PSKRPAAK---RRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEY 449
Query: 304 VKFLQLQVKVLSMS 317
+K LQ+QV+++ M+
Sbjct: 450 LKSLQMQVQIMWMT 463
>gi|242086827|ref|XP_002439246.1| hypothetical protein SORBIDRAFT_09g003090 [Sorghum bicolor]
gi|241944531|gb|EES17676.1| hypothetical protein SORBIDRAFT_09g003090 [Sorghum bicolor]
Length = 480
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 53/63 (84%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
A+R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASML+E I+Y+K LQLQV++
Sbjct: 257 AKRSRTAEVHNMSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQM 316
Query: 314 LSM 316
+SM
Sbjct: 317 MSM 319
>gi|224145129|ref|XP_002325537.1| predicted protein [Populus trichocarpa]
gi|222862412|gb|EEE99918.1| predicted protein [Populus trichocarpa]
Length = 246
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER+RR RI++R++ LQELVPN +K T+ A MLDE + YVKFLQ
Sbjct: 169 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEALAYVKFLQR 228
Query: 310 QVKVLS 315
Q++ L+
Sbjct: 229 QIQELT 234
>gi|224124904|ref|XP_002319451.1| predicted protein [Populus trichocarpa]
gi|222857827|gb|EEE95374.1| predicted protein [Populus trichocarpa]
Length = 59
Score = 85.5 bits (210), Expect = 6e-14, Method: Composition-based stats.
Identities = 38/59 (64%), Positives = 51/59 (86%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
+RG+A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV+V
Sbjct: 1 KRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQV 59
>gi|302804013|ref|XP_002983759.1| hypothetical protein SELMODRAFT_118904 [Selaginella moellendorffii]
gi|300148596|gb|EFJ15255.1| hypothetical protein SELMODRAFT_118904 [Selaginella moellendorffii]
Length = 89
Score = 85.5 bits (210), Expect = 6e-14, Method: Composition-based stats.
Identities = 39/65 (60%), Positives = 54/65 (83%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K R +R +A + H+++ER RR+RI E+M+ALQEL+PN+NKTDKASMLDE I+Y+K LQ
Sbjct: 8 KPATRPKRSRAAEVHNLSERRRRDRINEKMRALQELIPNSNKTDKASMLDEAIEYLKMLQ 67
Query: 309 LQVKV 313
LQ++V
Sbjct: 68 LQLQV 72
>gi|297606720|ref|NP_001058876.2| Os07g0143200 [Oryza sativa Japonica Group]
gi|255677508|dbj|BAF20790.2| Os07g0143200 [Oryza sativa Japonica Group]
Length = 447
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
P+++P + RR +A + H+++ER RR+RI E+++ALQELVP+ NKTDKAS+LDE I+Y
Sbjct: 218 PSKRPAAK---RRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEY 274
Query: 304 VKFLQLQVKVLSMS 317
+K LQ+QV+++ M+
Sbjct: 275 LKSLQMQVQIMWMT 288
>gi|326503832|dbj|BAK02702.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 407
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ER++ LQELVPN K T+ + MLD +DY+K LQ+
Sbjct: 323 KIRAKRGCATHPRSIAERVRRTKISERIRKLQELVPNMEKQTNTSDMLDLAVDYIKELQM 382
Query: 310 QVKVLSMSRLG 320
QVKV++ R G
Sbjct: 383 QVKVMNDGRAG 393
>gi|357437591|ref|XP_003589071.1| Transcription factor bHLH85 [Medicago truncatula]
gi|357437635|ref|XP_003589093.1| Transcription factor bHLH85 [Medicago truncatula]
gi|355478119|gb|AES59322.1| Transcription factor bHLH85 [Medicago truncatula]
gi|355478141|gb|AES59344.1| Transcription factor bHLH85 [Medicago truncatula]
Length = 375
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 49/66 (74%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ RA RG ATDP S+ R RRERI ER++ LQ LVPN K D ++ML+E ++YVKFLQ Q
Sbjct: 273 KTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQ 332
Query: 311 VKVLSM 316
+KV ++
Sbjct: 333 IKVCTI 338
>gi|302795837|ref|XP_002979681.1| hypothetical protein SELMODRAFT_419388 [Selaginella moellendorffii]
gi|300152441|gb|EFJ19083.1| hypothetical protein SELMODRAFT_419388 [Selaginella moellendorffii]
Length = 335
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 61/106 (57%), Gaps = 13/106 (12%)
Query: 206 LQVRSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSI 265
L+ R+ T AP ++S T G NT + RA+RG ATDP SI
Sbjct: 204 LESRTKSSVTLSAP--------EESSTVTSALGPALNTDG-----KPRAKRGSATDPQSI 250
Query: 266 AERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQV 311
R RRERI ER++ALQ LVPN K D +ML+E I+YVKFLQLQ+
Sbjct: 251 YARQRRERINERLRALQGLVPNGAKVDIVTMLEEAINYVKFLQLQL 296
>gi|351722090|ref|NP_001236464.1| uncharacterized protein LOC100527723 [Glycine max]
gi|255633050|gb|ACU16880.1| unknown [Glycine max]
Length = 157
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER+RR RI++R++ LQELVPN +K T+ A MLDE + YVKFLQ
Sbjct: 80 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQK 139
Query: 310 QVKVLS 315
Q++ LS
Sbjct: 140 QIEELS 145
>gi|326523485|dbj|BAJ92913.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 493
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+RG+ + H+++ER RR+RI E+M+ALQEL+PN NK DKASML+E I+Y+K LQLQV++
Sbjct: 321 KRGRTAEVHNMSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQM- 379
Query: 315 SMSRLGGAAAVAPLVADM 332
MS +G A P + M
Sbjct: 380 -MSTMGTAGMCMPPMLAM 396
>gi|115461987|ref|NP_001054593.1| Os05g0139100 [Oryza sativa Japonica Group]
gi|50511445|gb|AAT77368.1| hypothetical protein [Oryza sativa Japonica Group]
gi|51854388|gb|AAU10768.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578144|dbj|BAF16507.1| Os05g0139100 [Oryza sativa Japonica Group]
Length = 505
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 53/63 (84%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASML+E I+Y+K LQLQV++
Sbjct: 331 SKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQM 390
Query: 314 LSM 316
+SM
Sbjct: 391 MSM 393
>gi|297844782|ref|XP_002890272.1| F15H18.11 [Arabidopsis lyrata subsp. lyrata]
gi|297336114|gb|EFH66531.1| F15H18.11 [Arabidopsis lyrata subsp. lyrata]
Length = 1143
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 6/85 (7%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RR +I ER++ LQ++VP K A+MLDEII+YV+ LQ Q
Sbjct: 1028 VRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQ 1087
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSE 335
V+ LSM +L A++ D SSE
Sbjct: 1088 VEFLSM-KLNAASS----FYDFSSE 1107
>gi|225437758|ref|XP_002273729.1| PREDICTED: uncharacterized protein LOC100253874 [Vitis vinifera]
Length = 569
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 16/103 (15%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
+A+ + ST GG G ++R ++ + HS++E+ RR+RI ++M++LQEL+P
Sbjct: 365 RAEGAMSTRGGSAG-------------SKRNRSAEGHSLSEKRRRDRINKKMRSLQELIP 411
Query: 287 NANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
N K DK S+LDE IDY+K LQLQV+V+SM G +AP++
Sbjct: 412 NCKKVDKISILDEAIDYLKTLQLQVQVMSM---GAGMCMAPVM 451
>gi|326500148|dbj|BAJ90909.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 493
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+RG+ + H+++ER RR+RI E+M+ALQEL+PN NK DKASML+E I+Y+K LQLQV++
Sbjct: 321 KRGRTAEVHNMSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQM- 379
Query: 315 SMSRLGGAAAVAPLVADM 332
MS +G A P + M
Sbjct: 380 -MSTMGTAGMCMPPMLAM 396
>gi|51969310|dbj|BAD43347.1| putative bHLH transcription factor (bHLH048) [Arabidopsis thaliana]
gi|51970180|dbj|BAD43782.1| putative bHLH transcription factor (bHLH048) [Arabidopsis thaliana]
Length = 327
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASM-LDEIIDYVKF 306
P VRARRGQATD HS+AER RRE+I RMK LQELVP +K + LDEII++V+
Sbjct: 181 PYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTGLVLDEIINHVQT 240
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ QV++LSM RL AAV P +
Sbjct: 241 LQRQVEMLSM-RL---AAVNPRI 259
>gi|378924999|dbj|BAL63287.1| basic helix-loop-helix protein APG [Oryza sativa Japonica Group]
Length = 432
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 53/63 (84%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASML+E I+Y+K LQLQV++
Sbjct: 331 SKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQM 390
Query: 314 LSM 316
+SM
Sbjct: 391 MSM 393
>gi|255544792|ref|XP_002513457.1| DNA binding protein, putative [Ricinus communis]
gi|223547365|gb|EEF48860.1| DNA binding protein, putative [Ricinus communis]
Length = 418
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQ+LVPN +K T+ + MLD +DY+K LQ
Sbjct: 338 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLVPNMDKQTNTSDMLDLAVDYIKDLQR 397
Query: 310 QVKVLSMSR 318
QV+ LS +R
Sbjct: 398 QVETLSENR 406
>gi|222636419|gb|EEE66551.1| hypothetical protein OsJ_23063 [Oryza sativa Japonica Group]
Length = 517
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
P+++P + RR +A + H+++ER RR+RI E+++ALQELVP+ NKTDKAS+LDE I+Y
Sbjct: 317 PSKRPAAK---RRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEY 373
Query: 304 VKFLQLQVKVLSMS 317
+K LQ+QV+++ M+
Sbjct: 374 LKSLQMQVQIMWMT 387
>gi|302788881|ref|XP_002976209.1| hypothetical protein SELMODRAFT_443113 [Selaginella moellendorffii]
gi|300155839|gb|EFJ22469.1| hypothetical protein SELMODRAFT_443113 [Selaginella moellendorffii]
Length = 512
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 58/93 (62%), Gaps = 7/93 (7%)
Query: 233 STGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-- 290
S+GG N R+RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K
Sbjct: 397 SSGGLLAAENLLQDSVPCRLRAKRGCATHPRSIAERVRRTRISERMRRLQELVPNMDKSL 456
Query: 291 -----TDKASMLDEIIDYVKFLQLQVKVLSMSR 318
T+ + MLDE ++Y+KFLQ QV L R
Sbjct: 457 AVIQQTNTSDMLDEAVEYMKFLQKQVDDLQECR 489
>gi|297827895|ref|XP_002881830.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297327669|gb|EFH58089.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 359
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 278 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQR 337
Query: 310 QVKVLSMSR 318
Q K+L+ +R
Sbjct: 338 QYKILNDNR 346
>gi|357117653|ref|XP_003560578.1| PREDICTED: transcription factor bHLH48-like [Brachypodium
distachyon]
Length = 259
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 64/99 (64%), Gaps = 8/99 (8%)
Query: 232 GSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT 291
S GGG PA VRARRGQATD HS+AER RRE+I RM+ L+ELVP +K
Sbjct: 63 ASKDAGGGEDEKPAYV---HVRARRGQATDSHSLAERARREKINARMELLKELVPGCSKV 119
Query: 292 D-KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
A +LDEII++V+ LQ QV+ LSM RL AAV P V
Sbjct: 120 SGTALVLDEIINHVQSLQRQVEYLSM-RL---AAVNPRV 154
>gi|224075772|ref|XP_002304761.1| predicted protein [Populus trichocarpa]
gi|222842193|gb|EEE79740.1| predicted protein [Populus trichocarpa]
Length = 422
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQ+LVPN +K T+ + MLD +DY+K LQ
Sbjct: 343 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLVPNMDKQTNTSDMLDLAVDYIKDLQR 402
Query: 310 QVKVLSMSR 318
Q K LS +R
Sbjct: 403 QFKALSENR 411
>gi|357509815|ref|XP_003625196.1| Transcription factor bHLH60 [Medicago truncatula]
gi|124360133|gb|ABN08149.1| Helix-loop-helix DNA-binding [Medicago truncatula]
gi|355500211|gb|AES81414.1| Transcription factor bHLH60 [Medicago truncatula]
Length = 340
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 56/83 (67%), Gaps = 5/83 (6%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKF 306
P VR RRGQATD HS+AER RRE+I RMK LQELVP K A +LDEII++V+
Sbjct: 169 PYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCEKISGTALVLDEIINHVQT 228
Query: 307 LQLQVKVLSMSRLGGAAAVAPLV 329
LQ QV++LSM AAV P +
Sbjct: 229 LQRQVEILSMK----LAAVNPRI 247
>gi|2673918|gb|AAB88652.1| unknown protein [Arabidopsis thaliana]
Length = 380
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 299 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQR 358
Query: 310 QVKVLSMSR 318
Q K+L+ +R
Sbjct: 359 QYKILNDNR 367
>gi|326525038|dbj|BAK07789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 497
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+RG+ + H+++ER RR+RI E+M+ALQEL+PN NK DKASML+E I+Y+K LQLQV++
Sbjct: 325 KRGRTAEVHNMSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQM- 383
Query: 315 SMSRLGGAAAVAPLVADM 332
MS +G A P + M
Sbjct: 384 -MSTMGTAGMCMPPMLAM 400
>gi|226529517|ref|NP_001151233.1| helix-loop-helix DNA-binding domain containing protein [Zea mays]
gi|195645224|gb|ACG42080.1| helix-loop-helix DNA-binding domain containing protein [Zea mays]
gi|414886017|tpg|DAA62031.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 408
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ER++ LQELVPN K T+ A MLD +DY+K LQ
Sbjct: 324 KIRAKRGCATHPRSIAERVRRTKISERIRKLQELVPNMEKQTNTADMLDLAVDYIKDLQK 383
Query: 310 QVKVLSMSR 318
QVKVL+ R
Sbjct: 384 QVKVLNDGR 392
>gi|42569863|ref|NP_181757.2| transcription factor bHLH130 [Arabidopsis thaliana]
gi|75288858|sp|Q66GR3.1|BH130_ARATH RecName: Full=Transcription factor bHLH130; AltName: Full=Basic
helix-loop-helix protein 130; Short=AtbHLH130;
Short=bHLH 130; AltName: Full=Transcription factor EN
69; AltName: Full=bHLH transcription factor bHLH130
gi|51536448|gb|AAU05462.1| At2g42280 [Arabidopsis thaliana]
gi|52421281|gb|AAU45210.1| At2g42280 [Arabidopsis thaliana]
gi|110737862|dbj|BAF00869.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|330255005|gb|AEC10099.1| transcription factor bHLH130 [Arabidopsis thaliana]
Length = 359
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 278 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQR 337
Query: 310 QVKVLSMSR 318
Q K+L+ +R
Sbjct: 338 QYKILNDNR 346
>gi|413917616|gb|AFW57548.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 505
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 53/63 (84%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
A+R + + H+++ER RR+RI E+M+ALQEL+PN NK DK+SML+E I+Y+K LQLQV++
Sbjct: 318 AKRCRTAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKSSMLEEAIEYLKTLQLQVQM 377
Query: 314 LSM 316
+SM
Sbjct: 378 MSM 380
>gi|223702424|gb|ACN21643.1| putative basic helix-loop-helix protein BHLH6 [Lotus japonicus]
Length = 364
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 58/90 (64%), Gaps = 17/90 (18%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERL----------------RRERIAERMKALQELVPN 287
P +Q VRARRGQATD HSIAER+ RRE+I+ERMK LQ+LVP
Sbjct: 116 PPKQDYIHVRARRGQATDSHSIAERVIHFSLCLSISYLLLVARREKISERMKILQDLVPG 175
Query: 288 ANK-TDKASMLDEIIDYVKFLQLQVKVLSM 316
NK KA +LDEII+Y++ LQ QV+ LSM
Sbjct: 176 CNKMIGKALVLDEIINYIQSLQHQVEFLSM 205
>gi|356501423|ref|XP_003519524.1| PREDICTED: transcription factor PIF4-like [Glycine max]
Length = 562
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 250 QRVRA-RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
QR R+ RR +A + H+ +ER RR+RI E+M+ LQ+L+PN+NKTDKASML+E I+Y+K LQ
Sbjct: 351 QRTRSSRRNRAAEVHNQSERRRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQ 410
Query: 309 LQVKVLSM 316
Q++V+ M
Sbjct: 411 FQLQVMWM 418
>gi|30685840|ref|NP_173276.2| transcription factor BEE 1 [Arabidopsis thaliana]
gi|75299631|sp|Q8GZ13.1|BEE1_ARATH RecName: Full=Transcription factor BEE 1; AltName: Full=Basic
helix-loop-helix protein 44; Short=AtbHLH44; Short=bHLH
44; AltName: Full=Protein Brassinosteroid enhanced
expression 1; AltName: Full=Transcription factor EN 77;
AltName: Full=bHLH transcription factor bHLH044
gi|26449635|dbj|BAC41942.1| putative bHLH transcription factor bHLH044 [Arabidopsis thaliana]
gi|28950817|gb|AAO63332.1| At1g18400 [Arabidopsis thaliana]
gi|34391437|gb|AAN18283.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|332191590|gb|AEE29711.1| transcription factor BEE 1 [Arabidopsis thaliana]
Length = 260
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 6/98 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RR +I ER++ LQ++VP K A+MLDEII+YV+ LQ Q
Sbjct: 145 VRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQ 204
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGR 348
V+ LSM +L A++ D +SE +A R
Sbjct: 205 VEFLSM-KLTAASS----FYDFNSETDAVDSMQRAKAR 237
>gi|334184231|ref|NP_001189527.1| transcription factor bHLH84 [Arabidopsis thaliana]
gi|330251239|gb|AEC06333.1| transcription factor bHLH84 [Arabidopsis thaliana]
Length = 341
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 54/89 (60%), Gaps = 13/89 (14%)
Query: 251 RVRARRGQATDPHSIAERL-------------RRERIAERMKALQELVPNANKTDKASML 297
+ RA RG ATDP S+ RL RRERI ER++ LQ LVPN K D ++ML
Sbjct: 236 KTRASRGAATDPQSLYARLKQLNKVHCMMVQKRRERINERLRILQHLVPNGTKVDISTML 295
Query: 298 DEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
+E + YVKFLQLQ+K+LS L A +A
Sbjct: 296 EEAVQYVKFLQLQIKLLSSDDLWMYAPIA 324
>gi|414589820|tpg|DAA40391.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 244
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ER++ LQELVPN K T+ A MLD +DY+K LQ
Sbjct: 159 KIRAKRGCATHPRSIAERVRRTKISERIRKLQELVPNMEKQTNTADMLDLAVDYIKDLQK 218
Query: 310 QVKVLSMSR 318
QVKVL+ R
Sbjct: 219 QVKVLNDGR 227
>gi|6693022|gb|AAF24948.1|AC012375_11 T22C5.19 [Arabidopsis thaliana]
Length = 279
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K + RA +G ATDP S+ R RRE+I ER+K LQ LVPN K D ++ML+E + YVKFLQ
Sbjct: 164 KGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 223
Query: 309 LQVKVLSMSR 318
LQ+KV + +
Sbjct: 224 LQIKVCRLLK 233
>gi|356574311|ref|XP_003555292.1| PREDICTED: transcription factor bHLH85-like [Glycine max]
Length = 358
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 226 TQAQASGSTGGGGGGGNTPAQ-QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQEL 284
+Q+ ++ GG PA ++ RA A DP S+ R RRERI ER++ LQ L
Sbjct: 237 SQSDSNAYLEPNGGASKDPAPPNLDRKSRATTSAAADPQSLYARKRRERINERLRILQNL 296
Query: 285 VPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
VPN K D ++ML+E + YVKFLQLQ+K+LS L A +
Sbjct: 297 VPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDLWMYAPIV 338
>gi|218196060|gb|EEC78487.1| hypothetical protein OsI_18387 [Oryza sativa Indica Group]
Length = 289
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 53/63 (84%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASML+E I+Y+K LQLQV++
Sbjct: 115 SKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQM 174
Query: 314 LSM 316
+SM
Sbjct: 175 MSM 177
>gi|125562107|gb|EAZ07555.1| hypothetical protein OsI_29809 [Oryza sativa Indica Group]
Length = 403
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ER++ LQELVPN +K T+ A MLD +DY+K LQ
Sbjct: 321 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 380
Query: 310 QVKVLSMSR 318
QVK L+ SR
Sbjct: 381 QVKGLNDSR 389
>gi|58743491|gb|AAW81732.1| putative bZIPtranscription factor protein [Brassica oleracea]
Length = 263
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RR +I ER++ LQ++VP K+ A+MLDEII+YV+ LQ Q
Sbjct: 148 VRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKSMGMATMLDEIINYVQSLQNQ 207
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRN--PNGAQTTSANDSLTVT 365
V++LSM +L A++ D +SE +A R G QT N L ++
Sbjct: 208 VELLSM-KLTAASS----FYDFNSETDAVDSMQRAKAREAVEMGRQTRDGNPVLHLS 259
>gi|54306640|gb|AAV33474.1| basic helix-loop-helix protein [Fragaria x ananassa]
Length = 298
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 50/58 (86%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++LSM
Sbjct: 145 AAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 202
>gi|297788272|ref|XP_002862272.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297795123|ref|XP_002865446.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297307602|gb|EFH38530.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297311281|gb|EFH41705.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 55/78 (70%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K++ ++ +G A+DP S+ R RRERI +R+K LQ LVPN K D ++ML++ + YVKFLQ
Sbjct: 130 KRKAKSNKGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQ 189
Query: 309 LQVKVLSMSRLGGAAAVA 326
LQ+K+LS L A +A
Sbjct: 190 LQIKLLSSDDLWMYALLA 207
>gi|224094803|ref|XP_002310242.1| predicted protein [Populus trichocarpa]
gi|222853145|gb|EEE90692.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 84.3 bits (207), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I+++MK LQ+LVP NK T +A MLDEII+YV+ LQ Q
Sbjct: 37 VRARRGQATDSHSLAERARREKISKKMKCLQDLVPGCNKITGRAGMLDEIINYVQSLQRQ 96
Query: 311 VKVLSM 316
V+ +SM
Sbjct: 97 VEFISM 102
>gi|414590533|tpg|DAA41104.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 367
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ER++ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 284 KIRAKRGCATHPRSIAERVRRTKISERIRKLQELVPNMDKQTNTSDMLDLAVDYIKELQK 343
Query: 310 QVKVL 314
QVKVL
Sbjct: 344 QVKVL 348
>gi|222630134|gb|EEE62266.1| hypothetical protein OsJ_17053 [Oryza sativa Japonica Group]
Length = 404
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 53/63 (84%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R + + H+++ER RR+RI E+M+ALQEL+PN NK DKASML+E I+Y+K LQLQV++
Sbjct: 210 SKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQM 269
Query: 314 LSM 316
+SM
Sbjct: 270 MSM 272
>gi|225460440|ref|XP_002271390.1| PREDICTED: transcription factor bHLH80-like [Vitis vinifera]
Length = 251
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER+RR RI++R++ LQELVPN +K T+ A ML+E ++YVKFLQ
Sbjct: 174 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKFLQQ 233
Query: 310 QVKVLS 315
+++ LS
Sbjct: 234 KIQELS 239
>gi|357130181|ref|XP_003566729.1| PREDICTED: uncharacterized protein LOC100831834 [Brachypodium
distachyon]
Length = 298
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRA+RGQA D HS+AER+RRE+I+E+M LQ LVP +K T KA MLDEII YV+ LQ Q
Sbjct: 157 VRAKRGQARDSHSLAERVRREKISEKMLLLQSLVPGCDKVTGKAMMLDEIISYVQSLQNQ 216
Query: 311 VKVLSM 316
V+ LSM
Sbjct: 217 VEFLSM 222
>gi|296089503|emb|CBI39322.3| unnamed protein product [Vitis vinifera]
Length = 181
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER+RR RI++R++ LQELVPN +K T+ A ML+E ++YVKFLQ
Sbjct: 104 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKFLQQ 163
Query: 310 QVKVLS 315
+++ LS
Sbjct: 164 KIQELS 169
>gi|356500459|ref|XP_003519049.1| PREDICTED: transcription factor bHLH130-like [Glycine max]
Length = 378
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVP+ +K T+ A MLD ++Y+K LQ
Sbjct: 293 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPHMDKQTNTADMLDLAVEYIKDLQK 352
Query: 310 QVKVLSMSR 318
Q K LS R
Sbjct: 353 QFKTLSEKR 361
>gi|226509284|ref|NP_001148741.1| DNA binding protein [Zea mays]
gi|195621758|gb|ACG32709.1| DNA binding protein [Zea mays]
gi|414887073|tpg|DAA63087.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 1
[Zea mays]
gi|414887074|tpg|DAA63088.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 2
[Zea mays]
Length = 374
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ER++ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 291 KIRAKRGCATHPRSIAERVRRTKISERIRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQK 350
Query: 310 QVKVLSMSR 318
QVKVL S+
Sbjct: 351 QVKVLKESQ 359
>gi|302810858|ref|XP_002987119.1| hypothetical protein SELMODRAFT_28264 [Selaginella moellendorffii]
gi|300145016|gb|EFJ11695.1| hypothetical protein SELMODRAFT_28264 [Selaginella moellendorffii]
Length = 85
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 233 STGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-T 291
S+GG N R+RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T
Sbjct: 6 SSGGLLAAENLLQDSVPCRLRAKRGCATHPRSIAERVRRTRISERMRRLQELVPNMDKQT 65
Query: 292 DKASMLDEIIDYVKFLQLQV 311
+ + MLDE ++Y+KFLQ QV
Sbjct: 66 NTSDMLDEAVEYMKFLQKQV 85
>gi|115477188|ref|NP_001062190.1| Os08g0506700 [Oryza sativa Japonica Group]
gi|42408931|dbj|BAD10188.1| putative transcription factor RAU1 [Oryza sativa Japonica Group]
gi|113624159|dbj|BAF24104.1| Os08g0506700 [Oryza sativa Japonica Group]
gi|125603951|gb|EAZ43276.1| hypothetical protein OsJ_27873 [Oryza sativa Japonica Group]
gi|215712322|dbj|BAG94449.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 399
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ER++ LQELVPN +K T+ A MLD +DY+K LQ
Sbjct: 317 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 376
Query: 310 QVKVLSMSR 318
QVK L+ SR
Sbjct: 377 QVKGLNDSR 385
>gi|90399331|emb|CAJ86131.1| H0313F03.15 [Oryza sativa Indica Group]
Length = 307
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 5/92 (5%)
Query: 236 GGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKAS 295
GGG G +Q+ +Q + R A H ++ + RR+RI E++KALQEL+PN KTDK S
Sbjct: 120 GGGEGKEAASQEEEQTPKLRSVIA---HLVSRKRRRDRINEKLKALQELLPNCTKTDKVS 176
Query: 296 MLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 327
MLDE IDY+K LQLQ+++L M + G A V P
Sbjct: 177 MLDEAIDYLKSLQLQLQMLVMGK--GMAPVVP 206
>gi|302813935|ref|XP_002988652.1| hypothetical protein SELMODRAFT_128445 [Selaginella moellendorffii]
gi|300143473|gb|EFJ10163.1| hypothetical protein SELMODRAFT_128445 [Selaginella moellendorffii]
Length = 61
Score = 84.0 bits (206), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/39 (97%), Positives = 39/39 (100%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK 290
VRARRGQATDPHSIAERLRRE+IAERMKALQELVPNANK
Sbjct: 1 VRARRGQATDPHSIAERLRREKIAERMKALQELVPNANK 39
>gi|242052339|ref|XP_002455315.1| hypothetical protein SORBIDRAFT_03g008290 [Sorghum bicolor]
gi|241927290|gb|EES00435.1| hypothetical protein SORBIDRAFT_03g008290 [Sorghum bicolor]
Length = 290
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 227 QAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
+ QA+ + GGG K + +A DP S+A ++RRE+IAE++K LQ+LVP
Sbjct: 175 EVQAAAAKKQCGGGAR------KSKAKAAPAPTKDPQSVAAKVRREKIAEKLKVLQDLVP 228
Query: 287 NANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
N K D +ML++ I YVKFLQLQVKVL+
Sbjct: 229 NGTKVDLVTMLEKAITYVKFLQLQVKVLAADEF 261
>gi|242084158|ref|XP_002442504.1| hypothetical protein SORBIDRAFT_08g021000 [Sorghum bicolor]
gi|241943197|gb|EES16342.1| hypothetical protein SORBIDRAFT_08g021000 [Sorghum bicolor]
Length = 531
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 51/59 (86%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 312
A+R +A + H+++ER RR+RI E+MKALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++
Sbjct: 310 AKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 368
>gi|224072488|ref|XP_002303756.1| predicted protein [Populus trichocarpa]
gi|222841188|gb|EEE78735.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRG+ATD HS+AER+RRE+I+ RMK LQ LVP +K T KA +LDEII YV+FL+ +
Sbjct: 161 VRARRGEATDSHSLAERVRREKISSRMKLLQSLVPGCDKITGKALVLDEIISYVQFLKDR 220
Query: 311 VKV 313
V+V
Sbjct: 221 VQV 223
>gi|225458663|ref|XP_002284880.1| PREDICTED: transcription factor SPATULA [Vitis vinifera]
gi|302142294|emb|CBI19497.3| unnamed protein product [Vitis vinifera]
Length = 369
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 50/58 (86%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++L+M
Sbjct: 188 AAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTM 245
>gi|357159056|ref|XP_003578325.1| PREDICTED: transcription factor bHLH130-like [Brachypodium
distachyon]
Length = 409
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ER++ LQELVPN K T+ + MLD +DY+K LQ+
Sbjct: 326 KIRAKRGCATHPRSIAERVRRTKISERIRKLQELVPNMEKQTNTSDMLDLAVDYIKELQM 385
Query: 310 QVKVLSMSR 318
QVKV++ R
Sbjct: 386 QVKVMNDGR 394
>gi|147862096|emb|CAN80884.1| hypothetical protein VITISV_018653 [Vitis vinifera]
Length = 446
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 361 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQK 420
Query: 310 QVK 312
QVK
Sbjct: 421 QVK 423
>gi|225455954|ref|XP_002276500.1| PREDICTED: transcription factor BEE 3 [Vitis vinifera]
gi|297734215|emb|CBI15462.3| unnamed protein product [Vitis vinifera]
Length = 265
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 57/74 (77%), Gaps = 3/74 (4%)
Query: 246 QQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
++P++ VRARRGQATD HS+AER+RR +I ER++ LQ++VP KT A MLDEII+
Sbjct: 139 EKPREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIIN 198
Query: 303 YVKFLQLQVKVLSM 316
YV+ LQ QV+ LSM
Sbjct: 199 YVQSLQNQVEFLSM 212
>gi|449447621|ref|XP_004141566.1| PREDICTED: transcription factor bHLH80-like [Cucumis sativus]
gi|449522500|ref|XP_004168264.1| PREDICTED: transcription factor bHLH80-like [Cucumis sativus]
Length = 244
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER+RR RI++R++ LQE+VPN +K T+ A ML+E ++YVKFLQ
Sbjct: 167 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQK 226
Query: 310 QVKVLS 315
Q++ L+
Sbjct: 227 QIQELT 232
>gi|359487434|ref|XP_003633592.1| PREDICTED: transcription factor bHLH130-like [Vitis vinifera]
Length = 408
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQEL PN +K T+ A MLD ++Y+K LQ
Sbjct: 332 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELFPNMDKQTNTADMLDLAVEYIKDLQK 391
Query: 310 QVKVLSMSRL 319
QVK L+ +++
Sbjct: 392 QVKTLNDTKV 401
>gi|388517565|gb|AFK46844.1| unknown [Medicago truncatula]
Length = 194
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI++R++ LQELVPN +K T+ A MLDE + YVKFLQ
Sbjct: 117 KIRAKRGFATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAEMLDEAVAYVKFLQN 176
Query: 310 QVKVLS 315
Q++ LS
Sbjct: 177 QIEELS 182
>gi|223702430|gb|ACN21646.1| putative basic helix-loop-helix protein BHLH5 [Lotus japonicus]
gi|388495576|gb|AFK35854.1| unknown [Lotus japonicus]
Length = 268
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 8/131 (6%)
Query: 211 MPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQR------VRARRGQATDPHS 264
M G + P +++++++ +G G ++ ++ VRARRGQATD HS
Sbjct: 105 MSGPSSANSTPSVSESESKIKNCSGRGKRVKKNMMEEEDKKSTQVVHVRARRGQATDSHS 164
Query: 265 IAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAA 323
+AER+RR +I E++K LQ +VP KT A MLDEII+YV+ LQ QV+ LSM +L A+
Sbjct: 165 LAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSM-KLTAAS 223
Query: 324 AVAPLVADMSS 334
++++S
Sbjct: 224 TFYDFNSEINS 234
>gi|242082273|ref|XP_002445905.1| hypothetical protein SORBIDRAFT_07g027810 [Sorghum bicolor]
gi|241942255|gb|EES15400.1| hypothetical protein SORBIDRAFT_07g027810 [Sorghum bicolor]
Length = 399
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ER++ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 316 KIRAKRGCATHPRSIAERVRRTKISERIRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQK 375
Query: 310 QVKVLSMSR 318
QVK L+ SR
Sbjct: 376 QVKALNESR 384
>gi|168039475|ref|XP_001772223.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676554|gb|EDQ63036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 78
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 52/60 (86%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
A+R +A + H+ +ER RR+RI E+M+ALQEL+PN+NKTDKASML+E I+Y+K LQLQ++V
Sbjct: 19 AKRSRAAEVHNQSERRRRDRINEKMRALQELIPNSNKTDKASMLEEAIEYLKMLQLQLQV 78
>gi|242092116|ref|XP_002436548.1| hypothetical protein SORBIDRAFT_10g004500 [Sorghum bicolor]
gi|241914771|gb|EER87915.1| hypothetical protein SORBIDRAFT_10g004500 [Sorghum bicolor]
Length = 291
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 5/91 (5%)
Query: 231 SGSTGGGGGGGNTPAQQPKQ-----RVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
+G G GG+ P P++ ++R +A + H+++E+ RR +I E+MKALQ L+
Sbjct: 51 AGGLGDSDAGGSEPEAPPERTRGGGGSGSKRSRAAEVHNLSEKRRRSKINEKMKALQSLI 110
Query: 286 PNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
PN+NKTDKASMLDE I+Y+K LQLQV++LSM
Sbjct: 111 PNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 141
>gi|226505986|ref|NP_001147910.1| DNA binding protein [Zea mays]
gi|195614520|gb|ACG29090.1| DNA binding protein [Zea mays]
Length = 380
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
+VRA+RG AT P SIAER+RR +I+ER++ LQELVP+ +K T+ + MLD +DY+K LQ
Sbjct: 296 KVRAKRGCATHPRSIAERVRRTKISERIRKLQELVPDMDKQTNTSDMLDLAVDYIKDLQK 355
Query: 310 QVKVLSMSR 318
QVK L+ SR
Sbjct: 356 QVKALNESR 364
>gi|168061161|ref|XP_001782559.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665966|gb|EDQ52634.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 154
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Query: 245 AQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDY 303
++Q RVRARRGQATD S+AE +R E+I +RMK LQ+LVP K T K MLDEII+Y
Sbjct: 4 SKQDFIRVRARRGQATDSLSVAEWVRCEKIRKRMKYLQDLVPGCRKVTGKTDMLDEIINY 63
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPL 328
V+ LQ Q + LSM GA APL
Sbjct: 64 VQSLQCQAESLSMKL--GAVHPAPL 86
>gi|414869403|tpg|DAA47960.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 380
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
+VRA+RG AT P SIAER+RR +I+ER++ LQELVP+ +K T+ + MLD +DY+K LQ
Sbjct: 296 KVRAKRGCATHPRSIAERVRRTKISERIRKLQELVPDMDKQTNTSDMLDLAVDYIKDLQK 355
Query: 310 QVKVLSMSR 318
QVK L+ SR
Sbjct: 356 QVKALNESR 364
>gi|356557515|ref|XP_003547061.1| PREDICTED: transcription factor bHLH122-like [Glycine max]
Length = 411
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ERM+ LQ+LVPN +K T+ A MLD +DY+K LQ
Sbjct: 332 KIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQK 391
Query: 310 QVKVLS 315
QV+ LS
Sbjct: 392 QVQTLS 397
>gi|19401700|gb|AAL87667.1| transcription factor RAU1 [Oryza sativa]
Length = 150
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ER++ LQELVPN +K T+ A MLD +DY+K LQ
Sbjct: 68 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 127
Query: 310 QVKVLSMSR 318
QVK L+ SR
Sbjct: 128 QVKGLNDSR 136
>gi|224077304|ref|XP_002305203.1| predicted protein [Populus trichocarpa]
gi|222848167|gb|EEE85714.1| predicted protein [Populus trichocarpa]
Length = 334
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Query: 242 NTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEII 301
N ++PK + A G A D SIA + RRERI+ER+K LQ+LVPN +K D +ML++ I
Sbjct: 223 NNATKKPKPKSAA--GPAKDLQSIAAKNRRERISERLKVLQDLVPNGSKVDLVTMLEKAI 280
Query: 302 DYVKFLQLQVKVLSMSRL 319
YVKFLQLQVKVL+ L
Sbjct: 281 SYVKFLQLQVKVLATDEL 298
>gi|224139834|ref|XP_002323299.1| predicted protein [Populus trichocarpa]
gi|222867929|gb|EEF05060.1| predicted protein [Populus trichocarpa]
Length = 107
Score = 83.2 bits (204), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD +DY+K LQ
Sbjct: 29 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 88
Query: 310 QVKVLSMSR 318
Q K LS +R
Sbjct: 89 QYKTLSDNR 97
>gi|224118802|ref|XP_002317910.1| predicted protein [Populus trichocarpa]
gi|222858583|gb|EEE96130.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 233 STGGGGGGGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK 290
S+ G G + +PK VRARRGQATD HS+AER+RR +I ER++ LQ++VP K
Sbjct: 135 SSRRGKGVKSNEDGKPKDVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYK 194
Query: 291 T-DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAD 331
T A MLDEII+YV+ LQ QV+ LSM +L A+ A+
Sbjct: 195 TMGMAVMLDEIINYVQSLQNQVEFLSM-KLTAASTFYDFNAE 235
>gi|168040637|ref|XP_001772800.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675877|gb|EDQ62367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 461
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RA RG AT P SIAER+RR +I+ERMK LQELVPN+++ T+ A MLD+ ++YVK LQLQ
Sbjct: 379 LRANRGHATHPRSIAERVRRGKISERMKKLQELVPNSDRQTNTADMLDDAVEYVKQLQLQ 438
Query: 311 VKVLS 315
V+ L+
Sbjct: 439 VQELT 443
>gi|255582765|ref|XP_002532159.1| DNA binding protein, putative [Ricinus communis]
gi|223528169|gb|EEF30233.1| DNA binding protein, putative [Ricinus communis]
Length = 190
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 57/74 (77%), Gaps = 3/74 (4%)
Query: 246 QQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
++PK+ VRARRGQATD HS+AER+RR +I ER++ LQ++VP KT A MLDEII+
Sbjct: 65 EKPKEVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIIN 124
Query: 303 YVKFLQLQVKVLSM 316
YV+ LQ QV+ LSM
Sbjct: 125 YVQSLQNQVEFLSM 138
>gi|168012170|ref|XP_001758775.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689912|gb|EDQ76281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 95
Score = 83.2 bits (204), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/66 (66%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
+ RARRG AT P SIAER RR RI+ERMK LQ+LVPN +K T+ A MLDE ++YVK LQ
Sbjct: 14 KTRARRGYATHPRSIAERNRRSRISERMKKLQDLVPNMDKQTNTADMLDEAVEYVKHLQT 73
Query: 310 QVKVLS 315
QVK LS
Sbjct: 74 QVKDLS 79
>gi|297809111|ref|XP_002872439.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297318276|gb|EFH48698.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 263
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 18/150 (12%)
Query: 178 GGDGSVQAL-----YNGFTGSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQTQAQASG 232
G DG +Q+ Y+ +G++ S + ++ F +P Q+SG
Sbjct: 107 GSDGFIQSFGIPANYDYLSGNIDVSPGSKRSREMEA------LFSSPEFTSQMKGEQSSG 160
Query: 233 STGGGGGG------GNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVP 286
G G N RVRA+RG AT P SIAER+RR RI++R++ LQELVP
Sbjct: 161 QVPAGVSGMTDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVP 220
Query: 287 NANK-TDKASMLDEIIDYVKFLQLQVKVLS 315
N +K T+ A ML+E ++YVK LQ Q++ L+
Sbjct: 221 NMDKQTNTADMLEEAVEYVKVLQRQIQELT 250
>gi|413954820|gb|AFW87469.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 359
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 64/101 (63%), Gaps = 8/101 (7%)
Query: 230 ASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN 289
A GG G PA VRARRGQATD HS+AER RRE+I RM+ L+ELVP +
Sbjct: 161 AEEKLAGGDGDDEKPAYV---HVRARRGQATDSHSLAERARREKINARMELLKELVPGCS 217
Query: 290 KTD-KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
K A +LDEII++V+ LQ QV+ LSM RL AAV P V
Sbjct: 218 KVSGTALVLDEIINHVQSLQRQVEYLSM-RL---AAVNPRV 254
>gi|295913280|gb|ADG57897.1| transcription factor [Lycoris longituba]
Length = 176
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 64/93 (68%), Gaps = 11/93 (11%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I RMK LQELVP +K A +LDEII++V+ LQ +
Sbjct: 7 VRARRGQATDSHSLAERARREKINARMKLLQELVPGCSKISGTALVLDEIINHVQSLQRE 66
Query: 311 VKVLSMSRLGGAAAVAPLV------ADMSSEGG 337
V+ LSM RL AAV P + + +SSE G
Sbjct: 67 VEFLSM-RL---AAVNPRIDFSGLDSILSSECG 95
>gi|224069350|ref|XP_002302962.1| predicted protein [Populus trichocarpa]
gi|222844688|gb|EEE82235.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 47/63 (74%)
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
G A DP SIA + RRERI+ER+K LQ+LVPN +K D +ML++ I YVKFLQLQVKVL+
Sbjct: 232 GPAKDPQSIAAKNRRERISERLKMLQDLVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAT 291
Query: 317 SRL 319
Sbjct: 292 DEF 294
>gi|295913282|gb|ADG57898.1| transcription factor [Lycoris longituba]
Length = 206
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK---TDKASMLDEIIDYV 304
P VRARRGQATD HS+AER RRE+I RMK LQELVP +K + A +LD+II++V
Sbjct: 28 PYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCSKGQISGTALVLDKIINHV 87
Query: 305 KFLQLQVKVLSMSRLGGAAAVAPLV 329
+ LQ QV+ LSM RL AAV P +
Sbjct: 88 QSLQRQVEFLSM-RL---AAVTPRI 108
>gi|449475553|ref|XP_004154488.1| PREDICTED: transcription factor bHLH82-like [Cucumis sativus]
Length = 173
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 12/84 (14%)
Query: 248 PKQRVR----ARRGQATDPHSIAERLRRERIAERMKALQELVPNANK--------TDKAS 295
PK+++R +R +A + H+++ER RR+RI E+MKALQEL+P NK TDKAS
Sbjct: 44 PKKQLRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKLSSFTDSQTDKAS 103
Query: 296 MLDEIIDYVKFLQLQVKVLSMSRL 319
MLDE I+Y+K LQLQV++ ++ L
Sbjct: 104 MLDEAIEYLKTLQLQVQIFVLNSL 127
>gi|168038260|ref|XP_001771619.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677058|gb|EDQ63533.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 569
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 49/71 (69%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA R RA+RG ATDP S+ R RRE+I ER+K LQ LVPN + D +ML+E I +
Sbjct: 462 PALNTNGRPRAKRGSATDPQSVYARHRREKINERLKTLQRLVPNGEQVDIVTMLEEAIHF 521
Query: 304 VKFLQLQVKVL 314
VKFL+ Q+++L
Sbjct: 522 VKFLEFQLELL 532
>gi|357115803|ref|XP_003559675.1| PREDICTED: uncharacterized protein LOC100838948 [Brachypodium
distachyon]
Length = 307
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 48/71 (67%)
Query: 256 RGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
R TDP S+ R RRERI ER+K LQ LVPN K D ++ML+E + YVKFLQLQ+K+LS
Sbjct: 222 RQSTTDPQSLYARKRRERINERLKVLQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLS 281
Query: 316 MSRLGGAAAVA 326
+ A +A
Sbjct: 282 SDDMWMYAPIA 292
>gi|357444407|ref|XP_003592481.1| Transcription factor bHLH84 [Medicago truncatula]
gi|355481529|gb|AES62732.1| Transcription factor bHLH84 [Medicago truncatula]
Length = 287
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 233 STGGGGGGGNTPAQQ--PK--QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA 288
S GG +P + PK ++ RA ATD SI R RRERI ER++ LQ LVPN
Sbjct: 173 SIGGIISSSLSPKEHEAPKLGRKSRAASSPATDAQSIYARKRRERINERLRILQTLVPNG 232
Query: 289 NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
K D ++ML+E + YVKFLQLQ+K+LS + A +A
Sbjct: 233 TKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIA 270
>gi|6714300|gb|AAF25996.1|AC013354_15 F15H18.11 [Arabidopsis thaliana]
Length = 1154
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 6/85 (7%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RR +I ER++ LQ++VP K A+MLDEII+YV+ LQ Q
Sbjct: 1039 VRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQ 1098
Query: 311 VKVLSMSRLGGAAAVAPLVADMSSE 335
V+ LSM +L A++ D +SE
Sbjct: 1099 VEFLSM-KLTAASS----FYDFNSE 1118
>gi|414869406|tpg|DAA47963.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 277
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
+VRA+RG AT P SIAER+RR +I+ER++ LQELVP+ +K T+ + MLD +DY+K LQ
Sbjct: 193 KVRAKRGCATHPRSIAERVRRTKISERIRKLQELVPDMDKQTNTSDMLDLAVDYIKDLQK 252
Query: 310 QVKVLSMSR 318
QVK L+ SR
Sbjct: 253 QVKALNESR 261
>gi|413954819|gb|AFW87468.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 372
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 71/118 (60%), Gaps = 16/118 (13%)
Query: 218 APGPVMNQTQAQASGSTG-----GGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRE 272
AP P Q +A G T GG G PA VRARRGQATD HS+AER RRE
Sbjct: 160 APWP---QGKAAKKGKTAEEKLAGGDGDDEKPAYV---HVRARRGQATDSHSLAERARRE 213
Query: 273 RIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
+I RM+ L+ELVP +K A +LDEII++V+ LQ QV+ LSM RL AAV P V
Sbjct: 214 KINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSM-RL---AAVNPRV 267
>gi|15233768|ref|NP_192657.1| transcription factor bHLH81 [Arabidopsis thaliana]
gi|75311758|sp|Q9M0R0.1|BH081_ARATH RecName: Full=Transcription factor bHLH81; AltName: Full=Basic
helix-loop-helix protein 81; Short=AtbHLH81; Short=bHLH
81; AltName: Full=Transcription factor EN 72; AltName:
Full=bHLH transcription factor bHLH081
gi|7267561|emb|CAB78042.1| putative protein [Arabidopsis thaliana]
gi|34146832|gb|AAQ62424.1| At4g09180 [Arabidopsis thaliana]
gi|110741264|dbj|BAF02182.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|332657332|gb|AEE82732.1| transcription factor bHLH81 [Arabidopsis thaliana]
Length = 262
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER+RR RI++R++ LQELVPN +K T+ A ML+E ++YVK LQ
Sbjct: 183 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQR 242
Query: 310 QVKVLS 315
Q++ L+
Sbjct: 243 QIQELT 248
>gi|356495472|ref|XP_003516601.1| PREDICTED: transcription factor SPATULA-like [Glycine max]
Length = 375
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++LSM
Sbjct: 149 HNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 202
>gi|356550347|ref|XP_003543549.1| PREDICTED: transcription factor bHLH122-like [Glycine max]
Length = 408
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ERM+ LQ+LVPN +K T+ A MLD +DY+K LQ
Sbjct: 329 KIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQK 388
Query: 310 QVKVLS 315
QV+ LS
Sbjct: 389 QVQTLS 394
>gi|297744077|emb|CBI37047.3| unnamed protein product [Vitis vinifera]
Length = 200
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 58/76 (76%), Gaps = 3/76 (3%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R ++ + HS++E+ RR+RI ++M++LQEL+PN K DK S+LDE IDY+K LQLQV+V
Sbjct: 10 SKRNRSAEGHSLSEKRRRDRINKKMRSLQELIPNCKKVDKISILDEAIDYLKTLQLQVQV 69
Query: 314 LSMSRLGGAAAVAPLV 329
+SM G +AP++
Sbjct: 70 MSM---GAGMCMAPVM 82
>gi|413938508|gb|AFW73059.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 295
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 45/55 (81%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
DP S+A + RRERI+ER++ALQELVPN K D +ML++ I YVKFLQLQVKVL+
Sbjct: 203 DPQSLAAKNRRERISERLRALQELVPNGTKVDLVTMLEKAISYVKFLQLQVKVLA 257
>gi|296087271|emb|CBI33645.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRGQATD HSIAER+RRE+I R++ LQ+LVP K A MLDEII+YV LQ Q
Sbjct: 202 VRARRGQATDNHSIAERVRREKIKTRLRCLQDLVPGCYKNKGMAVMLDEIINYVHSLQNQ 261
Query: 311 VKVLSMSRLGGAAAV 325
V+ LS L A+++
Sbjct: 262 VEFLS-RELAAASSL 275
>gi|140084334|gb|ABO84931.1| Rhd6-like 2 [Physcomitrella patens]
Length = 173
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 49/62 (79%)
Query: 253 RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 312
RAR+G A DP SIA R+RRERI+ER+K LQ L+PN +K D +ML++ I YV+ L+LQ+K
Sbjct: 49 RARQGSANDPQSIAARVRRERISERLKVLQALIPNGDKVDMVTMLEKAITYVQCLELQIK 108
Query: 313 VL 314
+L
Sbjct: 109 ML 110
>gi|297798162|ref|XP_002866965.1| hypothetical protein ARALYDRAFT_353119 [Arabidopsis lyrata subsp.
lyrata]
gi|297312801|gb|EFH43224.1| hypothetical protein ARALYDRAFT_353119 [Arabidopsis lyrata subsp.
lyrata]
Length = 354
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 51/59 (86%)
Query: 258 QATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
+A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++L+M
Sbjct: 176 RAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTM 234
>gi|357440797|ref|XP_003590676.1| Transcription factor bHLH66 [Medicago truncatula]
gi|355479724|gb|AES60927.1| Transcription factor bHLH66 [Medicago truncatula]
Length = 325
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 18/146 (12%)
Query: 258 QATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS 317
Q ++ ++R RR+RIA+ +KAL EL+P + +A +LD+IIDYVK+LQ+QVK LS S
Sbjct: 190 QKSEKTRYSDRQRRQRIADNLKALHELLPTPHVGSQAYILDDIIDYVKYLQIQVKELSGS 249
Query: 318 RLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDM 377
+L + PLV EG G + + N+ L E + L+E +
Sbjct: 250 KLQADSNSIPLVF---HEGYG------------HYIKEQVLNEPL---EEIMGNLLEVNS 291
Query: 378 GSAMQYLQGKGLCLMPISLATAISTA 403
+ Q L+ KGL L+PI+L ++ A
Sbjct: 292 AATCQLLENKGLVLLPIALVDELNQA 317
>gi|297737801|emb|CBI27002.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRA+RGQATD HS+AER+RRE+I E+++ LQ+LVP KT A MLD II+YV+ LQ Q
Sbjct: 123 VRAKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQ 182
Query: 311 VKVLSMSRLGGAAAV 325
++ LSM +L A+
Sbjct: 183 IEFLSM-KLSAASTF 196
>gi|297736219|emb|CBI24857.3| unnamed protein product [Vitis vinifera]
Length = 246
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQEL PN +K T+ A MLD ++Y+K LQ
Sbjct: 170 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELFPNMDKQTNTADMLDLAVEYIKDLQK 229
Query: 310 QVKVLSMSRLGGAAA 324
QVK L+ +++ +
Sbjct: 230 QVKTLNDTKVKCTCS 244
>gi|225424017|ref|XP_002279412.1| PREDICTED: transcription factor bHLH75 [Vitis vinifera]
Length = 258
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRA+RGQATD HS+AER+RRE+I E+++ LQ+LVP KT A MLD II+YV+ LQ Q
Sbjct: 140 VRAKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQ 199
Query: 311 VKVLSMSRLGGAAAV 325
++ LSM +L A+
Sbjct: 200 IEFLSM-KLSAASTF 213
>gi|47497385|dbj|BAD19423.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 110
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 241 GNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLD 298
G++ ++QP + R R +R +A + H+++E+ RR RI E+MKALQ L+PN++KTDKASMLD
Sbjct: 13 GSSESEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKTDKASMLD 72
Query: 299 EIIDYVKFLQLQVKVL 314
+ I+Y+K LQLQV+++
Sbjct: 73 DAIEYLKQLQLQVQMI 88
>gi|356538931|ref|XP_003537954.1| PREDICTED: transcription factor bHLH122-like [Glycine max]
Length = 418
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ERM+ LQ+LVPN +K T+ A MLD ++Y+K LQ
Sbjct: 339 KIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQN 398
Query: 310 QVKVLSMSR 318
QV+ LS +R
Sbjct: 399 QVQTLSDNR 407
>gi|255583421|ref|XP_002532470.1| DNA binding protein, putative [Ricinus communis]
gi|223527828|gb|EEF29926.1| DNA binding protein, putative [Ricinus communis]
Length = 327
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 6/77 (7%)
Query: 243 TPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIID 302
T Q+PK + DP SIA + RRERI+ER+K LQELVPN +K D +ML++ I
Sbjct: 222 TKKQKPKT------SPSKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAIS 275
Query: 303 YVKFLQLQVKVLSMSRL 319
YVKFLQLQVKVL+
Sbjct: 276 YVKFLQLQVKVLATDEF 292
>gi|224120208|ref|XP_002330991.1| predicted protein [Populus trichocarpa]
gi|222872921|gb|EEF10052.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD + Y+K LQ
Sbjct: 270 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVVYIKDLQK 329
Query: 310 QVKVLSMSR 318
Q K LS +R
Sbjct: 330 QYKTLSDNR 338
>gi|224137582|ref|XP_002327162.1| predicted protein [Populus trichocarpa]
gi|222835477|gb|EEE73912.1| predicted protein [Populus trichocarpa]
Length = 310
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 48/54 (88%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++L+M
Sbjct: 128 HNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTM 181
>gi|18419937|ref|NP_568010.1| transcription factor SPATULA [Arabidopsis thaliana]
gi|75309699|sp|Q9FUA4.1|SPT_ARATH RecName: Full=Transcription factor SPATULA; AltName: Full=Basic
helix-loop-helix protein 24; Short=AtbHLH24; Short=bHLH
24; AltName: Full=Transcription factor EN 99; AltName:
Full=bHLH transcription factor bHLH024
gi|11245494|gb|AAG33640.1|AF319540_1 SPATULA [Arabidopsis thaliana]
gi|110738410|dbj|BAF01131.1| putative bHLH transcription factor (AtbHLH024) / SPATULA (SPT)
[Arabidopsis thaliana]
gi|111074392|gb|ABH04569.1| At4g36930 [Arabidopsis thaliana]
gi|332661320|gb|AEE86720.1| transcription factor SPATULA [Arabidopsis thaliana]
Length = 373
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 51/59 (86%)
Query: 258 QATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
+A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++L+M
Sbjct: 197 RAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTM 255
>gi|147773703|emb|CAN76460.1| hypothetical protein VITISV_010828 [Vitis vinifera]
Length = 237
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRA+RGQATD HS+AER+RRE+I E+++ LQ+LVP KT A MLD II+YV+ LQ Q
Sbjct: 119 VRAKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQ 178
Query: 311 VKVLSM 316
++ LSM
Sbjct: 179 IEFLSM 184
>gi|302793783|ref|XP_002978656.1| hypothetical protein SELMODRAFT_39143 [Selaginella moellendorffii]
gi|300153465|gb|EFJ20103.1| hypothetical protein SELMODRAFT_39143 [Selaginella moellendorffii]
Length = 66
Score = 82.0 bits (201), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/61 (62%), Positives = 53/61 (86%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++ER RR+RI ERMKALQEL+PN+NKTDKASMLDE I+Y+K LQ Q++V
Sbjct: 4 SKRSRAAEVHNLSERKRRDRINERMKALQELIPNSNKTDKASMLDEAIEYLKLLQHQLQV 63
Query: 314 L 314
+
Sbjct: 64 V 64
>gi|168056250|ref|XP_001780134.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668446|gb|EDQ55053.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 81
Score = 82.0 bits (201), Expect = 5e-13, Method: Composition-based stats.
Identities = 45/80 (56%), Positives = 59/80 (73%), Gaps = 3/80 (3%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKAS-MLDEIIDYVKFLQL 309
R RA+RG AT P SIAER+RR RI+ERMK LQ+LVPN KT S MLDE ++YVK LQ+
Sbjct: 2 RARAKRGCATHPRSIAERVRRTRISERMKKLQDLVPNMEKTTNTSDMLDETVEYVKSLQM 61
Query: 310 QVKVL--SMSRLGGAAAVAP 327
+VK L ++++L A ++P
Sbjct: 62 KVKELTETIAQLKAATQMSP 81
>gi|357482855|ref|XP_003611714.1| Transcription factor SPATULA [Medicago truncatula]
gi|355513049|gb|AES94672.1| Transcription factor SPATULA [Medicago truncatula]
Length = 344
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 48/54 (88%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++LS+
Sbjct: 116 HNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSL 169
>gi|356541324|ref|XP_003539128.1| PREDICTED: transcription factor UNE10-like [Glycine max]
Length = 459
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K V +R +A H+ +ER RR++I +RMK LQ+LVPN++KTDKASMLDE+I+Y+K LQ
Sbjct: 261 KSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQ 320
Query: 309 LQVKVLSMSRLGGAAAVAPLV 329
QV++ M+R+ ++ + PL
Sbjct: 321 AQVQM--MNRINMSSMMLPLT 339
>gi|102139852|gb|ABF70010.1| basic helix-loop-helix (bHLH) family protein [Musa acuminata]
Length = 302
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ R+ R ATDP S+ + RRERI R++ LQ LVPN K D ++ML+E + YVKFLQLQ
Sbjct: 203 KTRSNRWPATDPQSLYAKQRRERINARLRTLQNLVPNGTKVDISTMLEEAVRYVKFLQLQ 262
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS L A V
Sbjct: 263 IKLLSSDELWMYAPVV 278
>gi|356541789|ref|XP_003539355.1| PREDICTED: transcription factor SPATULA-like [Glycine max]
Length = 381
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++LSM
Sbjct: 145 HNLSEKRRRGRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 198
>gi|225441696|ref|XP_002277274.1| PREDICTED: transcription factor bHLH130-like [Vitis vinifera]
Length = 405
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD ++Y+K LQ
Sbjct: 320 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQK 379
Query: 310 QVKVLSMSR 318
Q L+ +R
Sbjct: 380 QYNTLTDNR 388
>gi|255544250|ref|XP_002513187.1| DNA binding protein, putative [Ricinus communis]
gi|223547685|gb|EEF49178.1| DNA binding protein, putative [Ricinus communis]
Length = 432
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD ++Y+K LQ
Sbjct: 349 KIRAKRGFATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTADMLDLAVEYIKDLQK 408
Query: 310 QVKVL 314
QVK L
Sbjct: 409 QVKTL 413
>gi|326487850|dbj|BAJ89764.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508951|dbj|BAJ86868.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 396
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 52/63 (82%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+ +ER RR+RI E+M++LQEL+P+ NK DKAS+LDE I+Y+K LQ+QV+V+
Sbjct: 203 RRSRAAEVHNQSERRRRDRINEKMRSLQELIPHCNKADKASILDEAIEYLKSLQMQVQVM 262
Query: 315 SMS 317
M+
Sbjct: 263 WMT 265
>gi|326505558|dbj|BAJ95450.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 52/63 (82%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+ +ER RR+RI E+M++LQEL+P+ NK DKAS+LDE I+Y+K LQ+QV+V+
Sbjct: 194 RRSRAAEVHNQSERRRRDRINEKMRSLQELIPHCNKADKASILDEAIEYLKSLQMQVQVM 253
Query: 315 SMS 317
M+
Sbjct: 254 WMT 256
>gi|147789805|emb|CAN62935.1| hypothetical protein VITISV_008845 [Vitis vinifera]
Length = 394
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD ++Y+K LQ
Sbjct: 309 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQK 368
Query: 310 QVKVLSMSR 318
Q L+ +R
Sbjct: 369 QYNTLTDNR 377
>gi|119655907|gb|ABL86246.1| BHLHogu [Brassica rapa subsp. chinensis]
Length = 122
Score = 82.0 bits (201), Expect = 6e-13, Method: Composition-based stats.
Identities = 52/102 (50%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
Query: 229 QASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA 288
+ GST + P VRARRGQATD HS+AER RRE+I RMK L+ELVP
Sbjct: 10 KVKGSTKMKSKSSEENGKLPYVHVRARRGQATDSHSLAERARREKINARMKLLRELVPGC 69
Query: 289 NKTD-KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
+K A +LDEII++V+ LQ QV++LSM RL AAV P +
Sbjct: 70 DKIQGTALVLDEIINHVQSLQRQVEMLSM-RL---AAVNPRI 107
>gi|356529573|ref|XP_003533364.1| PREDICTED: transcription factor BEE 3-like [Glycine max]
Length = 273
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 5/101 (4%)
Query: 221 PVMNQTQAQASGSTGGGGGGGNTPAQQPKQR----VRARRGQATDPHSIAERLRRERIAE 276
P ++++ ++ S+G G + ++ K + VRARRGQATD HS+AER+RR +I E
Sbjct: 121 PAVSESGSKIKHSSGRGKRVKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINE 180
Query: 277 RMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
+++ LQ +VP KT A MLDEII+YV+ LQ QV+ LS+
Sbjct: 181 KLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSL 221
>gi|115460586|ref|NP_001053893.1| Os04g0618600 [Oryza sativa Japonica Group]
gi|38344324|emb|CAE02150.2| OSJNBa0058K23.6 [Oryza sativa Japonica Group]
gi|113565464|dbj|BAF15807.1| Os04g0618600 [Oryza sativa Japonica Group]
gi|218195592|gb|EEC78019.1| hypothetical protein OsI_17435 [Oryza sativa Indica Group]
gi|222629570|gb|EEE61702.1| hypothetical protein OsJ_16185 [Oryza sativa Japonica Group]
Length = 181
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 322
H+ +ER RR+RI E++KALQEL+PN KTDK SMLDE IDY+K LQLQ+++L M + G
Sbjct: 18 HNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGK--GM 75
Query: 323 AAVAP 327
A V P
Sbjct: 76 APVVP 80
>gi|15219658|ref|NP_176820.1| transcription factor bHLH83 [Arabidopsis thaliana]
gi|75308842|sp|Q9C707.1|BH083_ARATH RecName: Full=Transcription factor bHLH83; AltName: Full=Basic
helix-loop-helix protein 83; Short=AtbHLH83; Short=bHLH
83; AltName: Full=Transcription factor EN 112; AltName:
Full=bHLH transcription factor bHLH083
gi|12322259|gb|AAG51154.1|AC074025_4 unknown protein [Arabidopsis thaliana]
gi|22135862|gb|AAM91513.1| unknown protein [Arabidopsis thaliana]
gi|30023790|gb|AAP13428.1| At1g66470 [Arabidopsis thaliana]
gi|332196391|gb|AEE34512.1| transcription factor bHLH83 [Arabidopsis thaliana]
Length = 298
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 226 TQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELV 285
TQ S+G G P PK DP S+A + RRERI+ER+K LQELV
Sbjct: 180 TQPSKKLSSGVTGKTKPKPTTSPK-----------DPQSLAAKNRRERISERLKILQELV 228
Query: 286 PNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 322
PN K D +ML++ I YVKFLQ+QVKVL+ A
Sbjct: 229 PNGTKVDLVTMLEKAISYVKFLQVQVKVLATDEFWPA 265
>gi|356504823|ref|XP_003521194.1| PREDICTED: transcription factor bHLH130-like [Glycine max]
Length = 387
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ER++ LQELVP +K T A MLD +DY+K LQ
Sbjct: 302 KIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPTMDKQTSTAEMLDLALDYIKDLQK 361
Query: 310 QVKVLSMSR 318
Q K LS R
Sbjct: 362 QFKTLSDKR 370
>gi|356520601|ref|XP_003528950.1| PREDICTED: transcription factor BEE 3-like [Glycine max]
Length = 272
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 5/101 (4%)
Query: 221 PVMNQTQAQASGSTGGGGGGGNTPAQQPKQR----VRARRGQATDPHSIAERLRRERIAE 276
P ++++ ++ S+G G + ++ K + VRARRGQATD HS+AER+RR +I E
Sbjct: 120 PAVSESGSKIKHSSGRGKRVKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINE 179
Query: 277 RMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
+++ LQ +VP KT A MLDEII+YV+ LQ QV+ LS+
Sbjct: 180 KLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSL 220
>gi|297838323|ref|XP_002887043.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297332884|gb|EFH63302.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 296
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 78/159 (49%), Gaps = 27/159 (16%)
Query: 168 VDVSSFKSQQGGDGSVQALYNG----FTGSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVM 223
+D+ S +S + G LY+ TGS H S P+ + RS G++
Sbjct: 128 MDIISPRSTETPQGQKDWLYSDSTVVTTGSRHESMSPKSAGN--KRSQTGES-------- 177
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQE 283
TQ ++G G P PK DP S+A + RRERI+ER+K LQE
Sbjct: 178 --TQPSKKPNSGVTGKAKPKPTTSPK-----------DPQSLAAKNRRERISERLKILQE 224
Query: 284 LVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 322
LVPN K D +ML++ I YVKFLQ+QVKVL+ A
Sbjct: 225 LVPNGTKVDLVTMLEKAISYVKFLQVQVKVLATDEFWPA 263
>gi|4006880|emb|CAB16798.1| putative protein [Arabidopsis thaliana]
gi|7270642|emb|CAB80359.1| putative protein [Arabidopsis thaliana]
Length = 415
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 51/59 (86%)
Query: 258 QATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
+A + H+++E+ RR RI E+MKALQ L+PN+NKTDKASMLDE I+Y+K LQLQV++L+M
Sbjct: 197 RAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTM 255
>gi|255586626|ref|XP_002533944.1| DNA binding protein, putative [Ricinus communis]
gi|223526075|gb|EEF28430.1| DNA binding protein, putative [Ricinus communis]
Length = 267
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRA+RGQATD HSIAER+RRE+I +++ LQ+LVP +K+ A ML+EII+YV LQ Q
Sbjct: 149 VRAKRGQATDSHSIAERVRREKINNKLRCLQDLVPGCHKSMGMAVMLEEIINYVHSLQNQ 208
Query: 311 VKVLSMSRLGGAAAVAPL 328
V+ LSM L A+ L
Sbjct: 209 VEFLSM-ELAAASCSYDL 225
>gi|356499097|ref|XP_003518380.1| PREDICTED: putative transcription factor bHLH086-like [Glycine max]
Length = 295
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 45/55 (81%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
DP S+A + RRERI+ER+K LQELVPN +K D +ML++ I YVKFLQLQVKVL+
Sbjct: 211 DPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLA 265
>gi|302805681|ref|XP_002984591.1| hypothetical protein SELMODRAFT_29179 [Selaginella moellendorffii]
gi|300147573|gb|EFJ14236.1| hypothetical protein SELMODRAFT_29179 [Selaginella moellendorffii]
Length = 64
Score = 81.6 bits (200), Expect = 7e-13, Method: Composition-based stats.
Identities = 38/61 (62%), Positives = 53/61 (86%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++ER RR+RI ERMKALQEL+PN+NKTDKASMLDE I+Y+K LQ Q++V
Sbjct: 4 SKRSRAAEVHNLSERKRRDRINERMKALQELIPNSNKTDKASMLDEAIEYLKLLQHQLQV 63
Query: 314 L 314
+
Sbjct: 64 V 64
>gi|115454133|ref|NP_001050667.1| Os03g0617800 [Oryza sativa Japonica Group]
gi|50428697|gb|AAT77048.1| putative transcription factor [Oryza sativa Japonica Group]
gi|108709850|gb|ABF97645.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
gi|113549138|dbj|BAF12581.1| Os03g0617800 [Oryza sativa Japonica Group]
gi|125587132|gb|EAZ27796.1| hypothetical protein OsJ_11741 [Oryza sativa Japonica Group]
Length = 310
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 48/68 (70%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318
ATDP S+ R RRERI ER+K LQ LVPN K D ++ML+E + YVKFLQLQ+K+LS
Sbjct: 228 ATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKFLQLQIKLLSSDE 287
Query: 319 LGGAAAVA 326
+ A +A
Sbjct: 288 MWMYAPIA 295
>gi|125544879|gb|EAY91018.1| hypothetical protein OsI_12623 [Oryza sativa Indica Group]
Length = 310
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 48/68 (70%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318
ATDP S+ R RRERI ER+K LQ LVPN K D ++ML+E + YVKFLQLQ+K+LS
Sbjct: 228 ATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKFLQLQIKLLSSDE 287
Query: 319 LGGAAAVA 326
+ A +A
Sbjct: 288 MWMYAPIA 295
>gi|356544541|ref|XP_003540708.1| PREDICTED: transcription factor bHLH122-like [Glycine max]
Length = 415
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ERM+ LQ+LVPN +K T+ A MLD ++Y+K LQ
Sbjct: 336 KIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQN 395
Query: 310 QVKVLSMSR 318
QV+ LS +R
Sbjct: 396 QVEALSDNR 404
>gi|356553623|ref|XP_003545154.1| PREDICTED: transcription factor PIF5-like [Glycine max]
Length = 562
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 52/63 (82%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+ +ER RR+RI E+M+ LQ+L+PN+NKTDKASML+E I+Y+K LQ Q++V
Sbjct: 356 SKRNRAAEVHNQSERRRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQV 415
Query: 314 LSM 316
+ M
Sbjct: 416 MWM 418
>gi|413947161|gb|AFW79810.1| hypothetical protein ZEAMMB73_605816 [Zea mays]
Length = 325
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 240 GGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDE 299
GG + KQ A DP S+A ++RRE+IAE++K LQ+LVPN K D +ML++
Sbjct: 216 GGVGARMKSKQAKLAAPAPTKDPQSVAAKVRREKIAEKLKVLQDLVPNGTKVDLVTMLEK 275
Query: 300 IIDYVKFLQLQVKVLSMSRL 319
I YVKFLQLQVKVL+
Sbjct: 276 AITYVKFLQLQVKVLAADEF 295
>gi|51970054|dbj|BAD43719.1| putative bHLH transcription factor (bHLH073/ALCATRAZ) [Arabidopsis
thaliana]
Length = 210
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 53/68 (77%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
KQR +R H+++E+ RR +I E+MKALQ+L+PN+NKTDKASMLDE I+Y+K LQ
Sbjct: 84 KQRNSLKRSIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQ 143
Query: 309 LQVKVLSM 316
LQV+ L++
Sbjct: 144 LQVQTLAV 151
>gi|388500044|gb|AFK38088.1| unknown [Medicago truncatula]
Length = 325
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 19/156 (12%)
Query: 248 PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 307
PK R + + Q ++ ++R R +RIA+ +KAL EL+P + +A +LD+IIDYVK+L
Sbjct: 181 PKSRGSSTK-QKSEKTRYSDRQRTQRIADNLKALHELLPTPHVGSQAYILDDIIDYVKYL 239
Query: 308 QLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEH 367
Q+QVK LS S+L + PLV EG G + + N+ L E
Sbjct: 240 QIQVKELSGSKLQADSNFIPLVF---HEGYG------------HYIKEQVLNEPL---EE 281
Query: 368 QVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTA 403
+ L+E + + Q L+ KGL L+PI+L ++ A
Sbjct: 282 IMGNLLEVNSAATCQLLENKGLVLLPIALVDELNQA 317
>gi|15219606|ref|NP_174776.1| transcription factor bHLH80 [Arabidopsis thaliana]
gi|75308885|sp|Q9C8P8.1|BH080_ARATH RecName: Full=Transcription factor bHLH80; AltName: Full=Basic
helix-loop-helix protein 80; Short=AtbHLH80; Short=bHLH
80; AltName: Full=Transcription factor EN 71; AltName:
Full=bHLH transcription factor bHLH080
gi|12324283|gb|AAG52112.1|AC023064_5 helix-loop-helix protein 1A, putative; 28707-26892 [Arabidopsis
thaliana]
gi|15724178|gb|AAL06481.1|AF411791_1 At1g35460/F12A4_2 [Arabidopsis thaliana]
gi|20127088|gb|AAM10958.1|AF488612_1 putative bHLH transcription factor [Arabidopsis thaliana]
gi|20147401|gb|AAM10410.1| At1g35460/F12A4_2 [Arabidopsis thaliana]
gi|332193674|gb|AEE31795.1| transcription factor bHLH80 [Arabidopsis thaliana]
Length = 259
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER+RR RI++R++ LQELVPN +K T+ A ML+E ++YVK LQ
Sbjct: 180 RVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQS 239
Query: 310 QVKVLS 315
Q++ L+
Sbjct: 240 QIQELT 245
>gi|255541166|ref|XP_002511647.1| DNA binding protein, putative [Ricinus communis]
gi|223548827|gb|EEF50316.1| DNA binding protein, putative [Ricinus communis]
Length = 465
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K V +R +A H+ +ER RR++I +RMK LQ+LVPN++KTDKASMLDE+I+Y+K LQ
Sbjct: 274 KSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQ 333
Query: 309 LQVKVLSMSRLGGAAAVAPL 328
QV++ MSR+ + P+
Sbjct: 334 AQVQM--MSRMNIQPVMLPM 351
>gi|359479869|ref|XP_003632365.1| PREDICTED: uncharacterized protein LOC100853547 [Vitis vinifera]
Length = 352
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 22/157 (14%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
P Q K R A R +A S +R RR RI+ER+KALQ L+P++ + KAS+LD+IIDY
Sbjct: 214 PCFQSKPRSSASRQRA----SATDRRRRLRISERLKALQVLLPHS-EGGKASVLDDIIDY 268
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLT 363
+K LQLQ+K LS SRLGG + P + EG G + P
Sbjct: 269 IKHLQLQIKDLSQSRLGGQSTSDPFIF---LEGYGHYILHDQMLKEP------------- 312
Query: 364 VTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
E + KL+E + A Q L+G+GL +MP++L +
Sbjct: 313 -LEEMMGKLLEVNPSEATQLLEGRGLYVMPMTLVEGL 348
>gi|225457285|ref|XP_002284441.1| PREDICTED: transcription factor UNE10-like [Vitis vinifera]
Length = 423
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 52/62 (83%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A H+ +ER RR+RI ++MK LQ+LVPN++KTDKASMLDE+I+Y+K LQ QV+++
Sbjct: 220 RRSRAAAIHNQSERRRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMM 279
Query: 315 SM 316
S+
Sbjct: 280 SV 281
>gi|388517319|gb|AFK46721.1| unknown [Medicago truncatula]
Length = 373
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 63/89 (70%), Gaps = 6/89 (6%)
Query: 242 NTPAQQP-KQRVRARRG-QATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDE 299
N ++P ++R R +R + H+++ER RR++I E+++AL+EL+PN NK DKASMLD+
Sbjct: 190 NIVKEKPVRERNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDD 249
Query: 300 IIDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
IDY+K L+LQ++++SM G A PL
Sbjct: 250 AIDYLKTLKLQLQIMSM----GRALCMPL 274
>gi|242066232|ref|XP_002454405.1| hypothetical protein SORBIDRAFT_04g030230 [Sorghum bicolor]
gi|241934236|gb|EES07381.1| hypothetical protein SORBIDRAFT_04g030230 [Sorghum bicolor]
Length = 306
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
DP S+A + RRERI+ER++ LQELVPN K D +ML++ I YVKFLQLQVKVL+
Sbjct: 216 DPQSLAAKNRRERISERLRTLQELVPNGTKVDLVTMLEKAISYVKFLQLQVKVLA 270
>gi|15240202|ref|NP_201512.1| transcription factor ALC [Arabidopsis thaliana]
gi|75309083|sp|Q9FHA2.1|ALC_ARATH RecName: Full=Transcription factor ALC; AltName: Full=Basic
helix-loop-helix protein 73; Short=AtbHLH73; Short=bHLH
73; AltName: Full=Protein ALCATRAZ; AltName:
Full=Transcription factor EN 98; AltName: Full=bHLH
transcription factor bHLH073
gi|10177598|dbj|BAB10945.1| unnamed protein product [Arabidopsis thaliana]
gi|114050687|gb|ABI49493.1| At5g67110 [Arabidopsis thaliana]
gi|332010918|gb|AED98301.1| transcription factor ALC [Arabidopsis thaliana]
Length = 210
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 53/68 (77%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
KQR +R H+++E+ RR +I E+MKALQ+L+PN+NKTDKASMLDE I+Y+K LQ
Sbjct: 84 KQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQ 143
Query: 309 LQVKVLSM 316
LQV+ L++
Sbjct: 144 LQVQTLAV 151
>gi|218198545|gb|EEC80972.1| hypothetical protein OsI_23697 [Oryza sativa Indica Group]
Length = 286
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I RM+ L+ELVP +K A +LDEII++V+ LQ Q
Sbjct: 107 VRARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQ 166
Query: 311 VKVLSMSRLGGAAAVAPLV 329
V+ LSM RL AAV P V
Sbjct: 167 VEYLSM-RL---AAVNPRV 181
>gi|297739719|emb|CBI29901.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD ++Y+K LQ
Sbjct: 195 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQK 254
Query: 310 QVKVLSMSR 318
Q L+ +R
Sbjct: 255 QYNTLTDNR 263
>gi|224106043|ref|XP_002314023.1| predicted protein [Populus trichocarpa]
gi|222850431|gb|EEE87978.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQEL PN +K T+ A MLD ++++K LQ
Sbjct: 336 KIRAKRGFATHPRSIAERVRRTRISERMRKLQELFPNMDKQTNTADMLDLAVEHIKDLQK 395
Query: 310 QVKVLS 315
QVK L+
Sbjct: 396 QVKTLT 401
>gi|357444405|ref|XP_003592480.1| Transcription factor bHLH84 [Medicago truncatula]
gi|355481528|gb|AES62731.1| Transcription factor bHLH84 [Medicago truncatula]
Length = 330
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 242 NTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEII 301
++P + K + R G A+DP + + RRERI ER+K LQ LVPN K D ++ML+E +
Sbjct: 228 DSPDLKLKGKSRCNGGSASDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAV 287
Query: 302 DYVKFLQLQVKVLS 315
YVKFLQ+Q+K+LS
Sbjct: 288 QYVKFLQVQIKLLS 301
>gi|21536863|gb|AAM61195.1| unknown [Arabidopsis thaliana]
Length = 210
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 53/68 (77%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
KQR +R H+++E+ RR +I E+MKALQ+L+PN+NKTDKASMLDE I+Y+K LQ
Sbjct: 84 KQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQ 143
Query: 309 LQVKVLSM 316
LQV+ L++
Sbjct: 144 LQVQTLAV 151
>gi|356569373|ref|XP_003552876.1| PREDICTED: putative transcription factor bHLH086-like [Glycine max]
Length = 339
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 46/57 (80%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
+ DP S+A + RRERI+ER+K LQELVPN +K D +ML++ I YVKFLQLQVKVL+
Sbjct: 246 SKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLA 302
>gi|296086723|emb|CBI32358.3| unnamed protein product [Vitis vinifera]
Length = 403
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 22/157 (14%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
P Q K R A R +A S +R RR RI+ER+KALQ L+P++ + KAS+LD+IIDY
Sbjct: 259 PCFQSKPRSSASRQRA----SATDRRRRLRISERLKALQVLLPHS-EGGKASVLDDIIDY 313
Query: 304 VKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLT 363
+K LQLQ+K LS SRLGG + P + EG G + P
Sbjct: 314 IKHLQLQIKDLSQSRLGGQSTSDPFIF---LEGYGHYILHDQMLKEP------------- 357
Query: 364 VTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 400
E + KL+E + A Q L+G+GL +MP++L +
Sbjct: 358 -LEEMMGKLLEVNPSEATQLLEGRGLYVMPMTLVEGL 393
>gi|242033665|ref|XP_002464227.1| hypothetical protein SORBIDRAFT_01g014580 [Sorghum bicolor]
gi|241918081|gb|EER91225.1| hypothetical protein SORBIDRAFT_01g014580 [Sorghum bicolor]
Length = 300
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
+ +A R AT+ S+ R RRERI ER++ LQ LVPN K D ++ML+E ++YVKFLQLQ
Sbjct: 209 KAKADRRSATESQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVEYVKFLQLQ 268
Query: 311 VKVLSMSRLGGAAAVA 326
+K+LS + A +A
Sbjct: 269 IKLLSSDEMWMYAPIA 284
>gi|297733906|emb|CBI15153.3| unnamed protein product [Vitis vinifera]
Length = 385
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 52/62 (83%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A H+ +ER RR+RI ++MK LQ+LVPN++KTDKASMLDE+I+Y+K LQ QV+++
Sbjct: 182 RRSRAAAIHNQSERRRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMM 241
Query: 315 SM 316
S+
Sbjct: 242 SV 243
>gi|449442685|ref|XP_004139111.1| PREDICTED: transcription factor bHLH122-like [Cucumis sativus]
Length = 437
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ERM+ LQELVPN +K T+ + MLD ++Y+K LQ
Sbjct: 358 KLRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVEYIKGLQK 417
Query: 310 QVKVLSMSR 318
QV+ LS +R
Sbjct: 418 QVQTLSDNR 426
>gi|449526183|ref|XP_004170093.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH122-like
[Cucumis sativus]
Length = 437
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ERM+ LQELVPN +K T+ + MLD ++Y+K LQ
Sbjct: 358 KLRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVEYIKGLQK 417
Query: 310 QVKVLSMSR 318
QV+ LS +R
Sbjct: 418 QVQTLSDNR 426
>gi|449445700|ref|XP_004140610.1| PREDICTED: transcription factor UNE10-like [Cucumis sativus]
Length = 478
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 241 GNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEI 300
G+ + K V +R +A H+ +ER RR++I +RMK LQ+LVPN+NKTDKASMLDE+
Sbjct: 276 GDRKKENAKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSNKTDKASMLDEV 335
Query: 301 IDYVKFLQLQVK 312
I+Y+K LQ QV+
Sbjct: 336 IEYLKQLQAQVQ 347
>gi|356537912|ref|XP_003537450.1| PREDICTED: putative transcription factor bHLH086-like [Glycine max]
Length = 339
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 46/57 (80%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
+ DP S+A + RRERI+ER+K LQELVPN +K D +ML++ I YVKFLQLQVKVL+
Sbjct: 246 SKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLA 302
>gi|449515887|ref|XP_004164979.1| PREDICTED: transcription factor UNE10-like [Cucumis sativus]
Length = 478
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 241 GNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEI 300
G+ + K V +R +A H+ +ER RR++I +RMK LQ+LVPN+NKTDKASMLDE+
Sbjct: 276 GDRKKENAKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSNKTDKASMLDEV 335
Query: 301 IDYVKFLQLQVK 312
I+Y+K LQ QV+
Sbjct: 336 IEYLKQLQAQVQ 347
>gi|440577342|emb|CCI55348.1| PH01B019A14.17 [Phyllostachys edulis]
Length = 184
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 322
H+ +ER RR+RI E++KALQEL+PN KTDK SMLDE IDY+K LQ+Q+++L M + G
Sbjct: 22 HNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQIQLQMLVMGK--GT 79
Query: 323 AAVAP 327
A V P
Sbjct: 80 APVVP 84
>gi|357113061|ref|XP_003558323.1| PREDICTED: transcription factor PIF5-like [Brachypodium distachyon]
Length = 418
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 52/63 (82%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+ +ER RR+RI E+M++LQEL+P+ NK DKAS+LDE I+Y+K LQ+Q++++
Sbjct: 232 RRSRAAEVHNQSERRRRDRINEKMRSLQELIPHCNKADKASILDEAIEYLKSLQMQLQIM 291
Query: 315 SMS 317
M+
Sbjct: 292 WMT 294
>gi|297846606|ref|XP_002891184.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297337026|gb|EFH67443.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER+RR RI++R++ LQELVPN +K T+ A ML+E ++YVK LQ
Sbjct: 177 RVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQG 236
Query: 310 QVKVLS 315
Q++ L+
Sbjct: 237 QIQELT 242
>gi|224079313|ref|XP_002305819.1| predicted protein [Populus trichocarpa]
gi|222848783|gb|EEE86330.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRA+RGQATD HSIAER+RRE+I +++ LQ++VP +K+ A ML+EII+YV LQ Q
Sbjct: 158 VRAKRGQATDSHSIAERIRREKINNKLRCLQDIVPGCHKSMGMAVMLEEIINYVHSLQNQ 217
Query: 311 VKVLSMSRLGGAAA 324
V+ LSM L A+
Sbjct: 218 VEFLSM-ELAAASC 230
>gi|302805717|ref|XP_002984609.1| hypothetical protein SELMODRAFT_423809 [Selaginella moellendorffii]
gi|300147591|gb|EFJ14254.1| hypothetical protein SELMODRAFT_423809 [Selaginella moellendorffii]
Length = 298
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 49/60 (81%)
Query: 253 RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 312
R+R+G A DP SIA R RRERI++R+K LQ+LVPN +K D +ML++ I+YVKF+QLQ++
Sbjct: 234 RSRQGTANDPQSIAARQRRERISQRLKILQDLVPNGSKVDLVTMLEKAINYVKFMQLQLQ 293
>gi|413943655|gb|AFW76304.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 370
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 235 GGGGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-K 293
GG PA VRARRGQATD HS+AER RRE+I RM+ L+ELVP +K
Sbjct: 143 AAAGGEDEKPAYV---HVRARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGT 199
Query: 294 ASMLDEIIDYVKFLQLQVKVLSM 316
A +LDEII++V+ LQ QV+ LSM
Sbjct: 200 ALVLDEIINHVQSLQRQVEYLSM 222
>gi|168027605|ref|XP_001766320.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682534|gb|EDQ68952.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 120
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 9/95 (9%)
Query: 239 GGGNTPAQQPKQ------RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-T 291
GG N+P + R RA+RG AT P SIAER+RR +I+ERMK LQ+LVPN +K T
Sbjct: 13 GGPNSPGLEDNHYGAVPMRTRAKRGCATHPRSIAERVRRTKISERMKRLQDLVPNMDKQT 72
Query: 292 DKASMLDEIIDYVKFLQLQVKVLS--MSRLGGAAA 324
+ + MLDE ++YVK LQ +V+ LS ++RL A+
Sbjct: 73 NTSDMLDETVEYVKSLQRKVQELSDTVARLKADAS 107
>gi|414590534|tpg|DAA41105.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 391
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ER++ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 287 KIRAKRGCATHPRSIAERVRRTKISERIRKLQELVPNMDKQTNTSDMLDLAVDYIKELQK 346
Query: 310 QVKVLSMSRLG 320
QVK S LG
Sbjct: 347 QVKNSKASSLG 357
>gi|414591362|tpg|DAA41933.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 384
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 54/92 (58%), Gaps = 30/92 (32%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK--------------------- 290
VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP +K
Sbjct: 278 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCSKVSKHRRPLLKIRLKTHAYFNF 337
Query: 291 ---------TDKASMLDEIIDYVKFLQLQVKV 313
T KA MLDEII+YV+ LQ QV+V
Sbjct: 338 QRLLDLVKVTGKAVMLDEIINYVQSLQCQVEV 369
>gi|125540854|gb|EAY87249.1| hypothetical protein OsI_08651 [Oryza sativa Indica Group]
Length = 299
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
DP S+A + RRERI+ER++ LQELVPN K D +ML++ I YVKFLQLQVKVL+
Sbjct: 206 DPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEKAISYVKFLQLQVKVLA 260
>gi|115448229|ref|NP_001047894.1| Os02g0710300 [Oryza sativa Japonica Group]
gi|113537425|dbj|BAF09808.1| Os02g0710300 [Oryza sativa Japonica Group]
gi|215766533|dbj|BAG98841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 300
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
DP S+A + RRERI+ER++ LQELVPN K D +ML++ I YVKFLQLQVKVL+
Sbjct: 208 DPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEKAISYVKFLQLQVKVLA 262
>gi|41052641|dbj|BAD07489.1| bHLH protein-like [Oryza sativa Japonica Group]
gi|41052857|dbj|BAD07771.1| bHLH protein-like [Oryza sativa Japonica Group]
Length = 298
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
DP S+A + RRERI+ER++ LQELVPN K D +ML++ I YVKFLQLQVKVL+
Sbjct: 206 DPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEKAISYVKFLQLQVKVLA 260
>gi|125583427|gb|EAZ24358.1| hypothetical protein OsJ_08110 [Oryza sativa Japonica Group]
Length = 282
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
DP S+A + RRERI+ER++ LQELVPN K D +ML++ I YVKFLQLQVKVL+
Sbjct: 190 DPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEKAISYVKFLQLQVKVLA 244
>gi|222635879|gb|EEE66011.1| hypothetical protein OsJ_21966 [Oryza sativa Japonica Group]
Length = 325
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER RRE+I RM+ L+ELVP +K A +LDEII++V+ LQ Q
Sbjct: 146 VRARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQ 205
Query: 311 VKVLSMSRLGGAAAVAPLV 329
V+ LSM RL AAV P V
Sbjct: 206 VEYLSM-RL---AAVNPRV 220
>gi|302793827|ref|XP_002978678.1| hypothetical protein SELMODRAFT_418491 [Selaginella moellendorffii]
gi|300153487|gb|EFJ20125.1| hypothetical protein SELMODRAFT_418491 [Selaginella moellendorffii]
Length = 298
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 49/60 (81%)
Query: 253 RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 312
R+R+G A DP SIA R RRERI++R+K LQ+LVPN +K D +ML++ I+YVKF+QLQ++
Sbjct: 234 RSRQGTANDPQSIAARQRRERISQRLKILQDLVPNGSKVDLVTMLEKAINYVKFMQLQLQ 293
>gi|224081688|ref|XP_002306475.1| predicted protein [Populus trichocarpa]
gi|222855924|gb|EEE93471.1| predicted protein [Populus trichocarpa]
Length = 220
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 54/66 (81%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A + H+++E+ RR RI E+MKALQ L+PN++KTDKASMLDE I+Y+K LQLQV+
Sbjct: 134 SKRTRAAEVHNLSEKRRRSRINEKMKALQNLIPNSSKTDKASMLDEAIEYLKLLQLQVQG 193
Query: 314 LSMSRL 319
LS+ L
Sbjct: 194 LSVRFL 199
>gi|255543172|ref|XP_002512649.1| conserved hypothetical protein [Ricinus communis]
gi|223548610|gb|EEF50101.1| conserved hypothetical protein [Ricinus communis]
Length = 297
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRG+ATDPHS+AER+RR++I+ RMK LQ LVP +K T KA +LDEII +V LQ Q
Sbjct: 164 VRARRGEATDPHSLAERVRRKKISVRMKLLQSLVPGCDKLTGKAQILDEIIRHVLSLQNQ 223
Query: 311 VKVLS 315
V+ L+
Sbjct: 224 VEFLA 228
>gi|342298426|emb|CBY05403.1| ALCATRAZ-like protein [Lepidium appelianum]
Length = 173
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 53/68 (77%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+QR +R H+++E+ RR +I E+MKALQ+L+PN+NKTDKASMLDE I+Y+K LQ
Sbjct: 83 RQRNSLKRNIDAQFHNLSEKRRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYMKQLQ 142
Query: 309 LQVKVLSM 316
LQV+ L++
Sbjct: 143 LQVQTLAV 150
>gi|342298438|emb|CBY05409.1| ALCATRAZ-like protein [Lepidium campestre]
Length = 197
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 53/68 (77%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
+QR +R H+++E+ RR +I E+MKALQ+L+PN+NKTDKASMLDE I+Y+K LQ
Sbjct: 83 RQRNSLKRNIDAQFHNLSEKRRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQ 142
Query: 309 LQVKVLSM 316
LQV+ L++
Sbjct: 143 LQVQTLAV 150
>gi|168045219|ref|XP_001775076.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673663|gb|EDQ60183.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 73
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/67 (61%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFL 307
+ R RA+RG AT P SIAER+RR RI+ERMK LQ+LVPN K T+ A MLDE ++YVK L
Sbjct: 2 QMRARAKRGCATHPRSIAERVRRTRISERMKKLQDLVPNMEKTTNTADMLDETVEYVKSL 61
Query: 308 QLQVKVL 314
Q++V L
Sbjct: 62 QVKVSEL 68
>gi|30678541|ref|NP_191916.3| transcription factor UNE10 [Arabidopsis thaliana]
gi|75299638|sp|Q8GZ38.1|UNE10_ARATH RecName: Full=Transcription factor UNE10; AltName: Full=Basic
helix-loop-helix protein 16; Short=AtbHLH16; Short=bHLH
16; AltName: Full=Protein UNFERTILIZED EMBRYO SAC 10;
AltName: Full=Transcription factor EN 108; AltName:
Full=bHLH transcription factor bHLH016
gi|26449558|dbj|BAC41905.1| putative bHLH transcription factor bHLH016 [Arabidopsis thaliana]
gi|109134123|gb|ABG25060.1| At4g00050 [Arabidopsis thaliana]
gi|332656418|gb|AEE81818.1| transcription factor UNE10 [Arabidopsis thaliana]
Length = 399
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 52/67 (77%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K V +R +A H+ +ER RR++I +RMK LQ+LVPN++KTDKASMLDE+I+Y+K LQ
Sbjct: 204 KSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQ 263
Query: 309 LQVKVLS 315
QV ++S
Sbjct: 264 AQVSMMS 270
>gi|147810591|emb|CAN71967.1| hypothetical protein VITISV_017400 [Vitis vinifera]
Length = 271
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 66/111 (59%), Gaps = 10/111 (9%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDK------ASMLDEIIDYVK 305
VRARRGQATD HSIAER+RRE+I R++ LQ+LVP K A MLDEII+YV
Sbjct: 148 VRARRGQATDNHSIAERVRREKIKTRLRCLQDLVPGCYKVYDPQNKGMAVMLDEIINYVH 207
Query: 306 FLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGGGDCIQANGRNPNGAQTT 356
LQ QV+ LS L A+++ ++ +E C + + R+ GA T
Sbjct: 208 SLQNQVEFLS-RELAAASSLHNFNSE--TEAIKNAQCFRVD-RDHVGAGLT 254
>gi|10177170|dbj|BAB10359.1| unnamed protein product [Arabidopsis thaliana]
Length = 239
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 45/62 (72%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 320
DP S+A + RRERI+ER+K LQELVPN K D +ML++ I YVKFLQ+QVKVL+
Sbjct: 142 DPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVLAADEFW 201
Query: 321 GA 322
A
Sbjct: 202 PA 203
>gi|15240346|ref|NP_198596.1| putative transcription factor bHLH086 [Arabidopsis thaliana]
gi|218563533|sp|Q9FJ00.2|BH086_ARATH RecName: Full=Putative transcription factor bHLH086; AltName:
Full=Basic helix-loop-helix protein 86; Short=AtbHLH86;
Short=bHLH 86; AltName: Full=Transcription factor EN
113; AltName: Full=bHLH transcription factor bHLH086
gi|332006851|gb|AED94234.1| putative transcription factor bHLH086 [Arabidopsis thaliana]
Length = 307
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 45/62 (72%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 320
DP S+A + RRERI+ER+K LQELVPN K D +ML++ I YVKFLQ+QVKVL+
Sbjct: 210 DPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVLAADEFW 269
Query: 321 GA 322
A
Sbjct: 270 PA 271
>gi|297801316|ref|XP_002868542.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297314378|gb|EFH44801.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 300
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 45/62 (72%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 320
DP S+A + RRERI+ER+K LQELVPN K D +ML++ I YVKFLQ+QVKVL+
Sbjct: 210 DPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVLAADEFW 269
Query: 321 GA 322
A
Sbjct: 270 PA 271
>gi|356551793|ref|XP_003544258.1| PREDICTED: putative transcription factor bHLH086-like [Glycine max]
Length = 110
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 45/55 (81%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
DP S+A + RRERI+ER+K LQELVPN +K D +ML++ I YVKFLQLQVKVL+
Sbjct: 26 DPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLA 80
>gi|167999578|ref|XP_001752494.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696394|gb|EDQ82733.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 538
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 209 RSMPGQTFGAPGPVMNQTQAQASGSTGGGGGGGNTPAQQPKQRVRARRGQAT--DPHSIA 266
RS+P + F G + + + SG GG P + R+ + AT +P S+A
Sbjct: 340 RSIPSRQFSFQGKL---SPSHLSG--AGGSTYSRLPGLPEEGRLCNGKPAATSVEPQSVA 394
Query: 267 ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVA 326
R RR++I+ER++ L++L+P NK D A+MLDE I+YVKFLQLQV++L L A A
Sbjct: 395 ARHRRKKISERIRVLEKLIPGGNKMDTATMLDEAIEYVKFLQLQVQILESDTLDNAPLTA 454
Query: 327 PLVADMSSEGGGGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQG 386
++ +G ++ G G ++ A L+V ++ E + Q L
Sbjct: 455 SNGQNLPLQGSRAKQGLKRKGDTSLGGDSSPA---LSVRAATSPLILSEVL---QQQLFK 508
Query: 387 KGLCLMPI 394
+ LCL+ I
Sbjct: 509 QKLCLVSI 516
>gi|20127012|gb|AAM10933.1|AF488561_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 399
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 52/67 (77%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K V +R +A H+ +ER RR++I +RMK LQ+LVPN++KTDKASMLDE+I+Y+K LQ
Sbjct: 204 KSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQ 263
Query: 309 LQVKVLS 315
QV ++S
Sbjct: 264 AQVSMMS 270
>gi|356525636|ref|XP_003531430.1| PREDICTED: transcription factor bHLH130-like [Glycine max]
Length = 450
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ER+K LQ+L P + K T A MLD ++Y+K LQ
Sbjct: 365 KIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLQQ 424
Query: 310 QVKVLS 315
+VK+LS
Sbjct: 425 KVKILS 430
>gi|242088653|ref|XP_002440159.1| hypothetical protein SORBIDRAFT_09g027030 [Sorghum bicolor]
gi|241945444|gb|EES18589.1| hypothetical protein SORBIDRAFT_09g027030 [Sorghum bicolor]
Length = 401
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 237 GGGGGNTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASM 296
G G P+ Q K R + R ++DP ++A RLRRER++ER++ LQ LVP ++ D ASM
Sbjct: 270 GAGTEPAPSSQSKPRRKNVR-ISSDPQTVAARLRRERVSERLRVLQRLVPGGSRMDTASM 328
Query: 297 LDEIIDYVKFLQLQVKVL 314
LDE Y+KFL+ QVK L
Sbjct: 329 LDEAASYLKFLKTQVKAL 346
>gi|218192293|gb|EEC74720.1| hypothetical protein OsI_10445 [Oryza sativa Indica Group]
Length = 324
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 260 TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
TDP S+ R RRERI ER+K LQ L+PN K D ++ML+E + YVKFLQLQ+K+LS +
Sbjct: 240 TDPQSLYARKRRERINERLKILQNLIPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDM 299
Query: 320 GGAAAVA 326
A +A
Sbjct: 300 WMFAPIA 306
>gi|297794285|ref|XP_002865027.1| hypothetical protein ARALYDRAFT_496889 [Arabidopsis lyrata subsp.
lyrata]
gi|297310862|gb|EFH41286.1| hypothetical protein ARALYDRAFT_496889 [Arabidopsis lyrata subsp.
lyrata]
Length = 206
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 53/68 (77%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
KQR +R H+++E+ RR +I E+MKALQ+L+PN+NKTDKASMLDE I+Y+K LQ
Sbjct: 80 KQRNSLKRTIDAQFHNLSEKRRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQ 139
Query: 309 LQVKVLSM 316
LQV+ L++
Sbjct: 140 LQVQTLAV 147
>gi|222624408|gb|EEE58540.1| hypothetical protein OsJ_09836 [Oryza sativa Japonica Group]
Length = 324
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 260 TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
TDP S+ R RRERI ER+K LQ L+PN K D ++ML+E + YVKFLQLQ+K+LS +
Sbjct: 240 TDPQSLYARKRRERINERLKILQNLIPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDM 299
Query: 320 GGAAAVA 326
A +A
Sbjct: 300 WMFAPIA 306
>gi|108706746|gb|ABF94541.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
Length = 324
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 260 TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
TDP S+ R RRERI ER+K LQ L+PN K D ++ML+E + YVKFLQLQ+K+LS +
Sbjct: 240 TDPQSLYARKRRERINERLKILQNLIPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDM 299
Query: 320 GGAAAVA 326
A +A
Sbjct: 300 WMFAPIA 306
>gi|357444375|ref|XP_003592465.1| Transcription factor bHLH130 [Medicago truncatula]
gi|355481513|gb|AES62716.1| Transcription factor bHLH130 [Medicago truncatula]
Length = 433
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ERM+ LQ+LVPN +K T+ + MLD ++Y+K LQ
Sbjct: 354 KIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQN 413
Query: 310 QVKVLSMSR 318
QV+ LS +R
Sbjct: 414 QVETLSDNR 422
>gi|356527821|ref|XP_003532505.1| PREDICTED: transcription factor BEE 3-like [Glycine max]
Length = 252
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 221 PVMNQTQAQASGSTGGGGGGGNTPAQQPK----QRVRARRGQATDPHSIAERLRRERIAE 276
P ++++ ++ S+G G + K VRA+RGQATD HS+AER+RR +I E
Sbjct: 98 PAVSESGSKTKNSSGRGKRVKRNSIEDKKPNEVVHVRAKRGQATDSHSLAERVRRGKINE 157
Query: 277 RMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPL 328
+++ LQ +VP KT A MLDEII+YV+ LQ QV+ LSM +L A+ L
Sbjct: 158 KLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSM-KLTAASTYYDL 209
>gi|18403381|ref|NP_564583.1| transcription factor bHLH122 [Arabidopsis thaliana]
gi|75308807|sp|Q9C690.1|BH122_ARATH RecName: Full=Transcription factor bHLH122; AltName: Full=Basic
helix-loop-helix protein 122; Short=AtbHLH122;
Short=bHLH 122; AltName: Full=Transcription factor EN
70; AltName: Full=bHLH transcription factor bHLH122
gi|12320788|gb|AAG50543.1|AC079828_14 unknown protein [Arabidopsis thaliana]
gi|14334500|gb|AAK59447.1| unknown protein [Arabidopsis thaliana]
gi|17104811|gb|AAL34294.1| unknown protein [Arabidopsis thaliana]
gi|332194505|gb|AEE32626.1| transcription factor bHLH122 [Arabidopsis thaliana]
Length = 379
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN-KTDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ERM+ LQ+LVPN + +T+ A MLD + Y+K LQ
Sbjct: 303 KIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQE 362
Query: 310 QVKVLSMSR 318
QVK L SR
Sbjct: 363 QVKALEESR 371
>gi|339716188|gb|AEJ88333.1| putative MYC protein [Tamarix hispida]
Length = 160
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER+RR RI++R++ LQELVPN +K T+ A ML+E ++YVK LQ
Sbjct: 83 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKGLQK 142
Query: 310 QVKVL 314
Q++ L
Sbjct: 143 QIEEL 147
>gi|4567302|gb|AAD23713.1| unknown protein [Arabidopsis thaliana]
Length = 226
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 61/91 (67%), Gaps = 13/91 (14%)
Query: 248 PKQRVRARRGQATDPHSIAERL--------RRERIAERMKALQELVPNANKTD-KASMLD 298
P VRARRGQATD HS+AER+ RRE+I RMK LQELVP +K A +LD
Sbjct: 125 PYVHVRARRGQATDNHSLAERVIHNLTDMARREKINARMKLLQELVPGCDKIQGTALVLD 184
Query: 299 EIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
EII++V+ LQ QV++LSM RL AAV P +
Sbjct: 185 EIINHVQTLQRQVEMLSM-RL---AAVNPRI 211
>gi|356503978|ref|XP_003520776.1| PREDICTED: uncharacterized protein LOC100804665 [Glycine max]
Length = 513
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 51/64 (79%)
Query: 253 RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 312
R RR + H+++E+ RRE+I ++M+ L+EL+PN NK DKASMLD+ IDY+K L+LQ++
Sbjct: 321 RVRRIRNPVVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQ 380
Query: 313 VLSM 316
++SM
Sbjct: 381 IMSM 384
>gi|168027682|ref|XP_001766358.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682267|gb|EDQ68686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 81
Score = 79.7 bits (195), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
A+R +A + H+ +ER RR+RI E+M+ALQEL+PN+NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 19 AKRSRAAEVHNQSERRRRDRINEKMRALQELIPNSNKTDKASMLDEAIEYLKMLQLQLQV 78
Query: 314 LSM 316
++
Sbjct: 79 CAV 81
>gi|357511583|ref|XP_003626080.1| Transcription factor SPATULA [Medicago truncatula]
gi|355501095|gb|AES82298.1| Transcription factor SPATULA [Medicago truncatula]
Length = 373
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 52/66 (78%), Gaps = 4/66 (6%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 322
H+++ER RR++I E+++AL+EL+PN NK DKASMLD+ IDY+K L+LQ++++SM G
Sbjct: 213 HNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSM----GR 268
Query: 323 AAVAPL 328
A PL
Sbjct: 269 ALCMPL 274
>gi|168000336|ref|XP_001752872.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696035|gb|EDQ82376.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA R R +RG ATDP S+ R RRE+IAER++ LQ L+PN K D +MLDE + Y
Sbjct: 439 PALNRNGRPRVQRGSATDPQSVHARARREKIAERLRKLQHLIPNGGKVDIVTMLDEAVHY 498
Query: 304 VKFLQLQV 311
V+FL+ QV
Sbjct: 499 VQFLKRQV 506
>gi|357511681|ref|XP_003626129.1| Transcription factor PIF3 [Medicago truncatula]
gi|355501144|gb|AES82347.1| Transcription factor PIF3 [Medicago truncatula]
Length = 682
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 59/76 (77%), Gaps = 3/76 (3%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
+++ ++T+ H+++ER RR+RI ERM+ALQEL+PN NK DKASMLDE I+Y+K LQLQ+++
Sbjct: 425 SKKNRSTEVHNLSERRRRDRINERMRALQELIPNCNKADKASMLDEAIEYLKSLQLQLQI 484
Query: 314 LSMSRLGGAAAVAPLV 329
+SM GG P+
Sbjct: 485 MSM---GGGGLYMPMT 497
>gi|297824267|ref|XP_002880016.1| hypothetical protein ARALYDRAFT_483401 [Arabidopsis lyrata subsp.
lyrata]
gi|297325855|gb|EFH56275.1| hypothetical protein ARALYDRAFT_483401 [Arabidopsis lyrata subsp.
lyrata]
Length = 422
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI ERMKALQEL+P+ +KTDKAS+LDE IDY+K LQLQ++V+
Sbjct: 253 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM 312
Query: 315 SMSRLGGAAAVAPLV 329
M G A AP++
Sbjct: 313 WM---GSGMAAAPMM 324
>gi|357454359|ref|XP_003597460.1| Transcription factor bHLH122 [Medicago truncatula]
gi|355486508|gb|AES67711.1| Transcription factor bHLH122 [Medicago truncatula]
Length = 412
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ERM+ LQ+LVPN +K T+ A MLD +DY+K LQ
Sbjct: 331 KIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQK 390
Query: 310 QVKVL 314
Q + L
Sbjct: 391 QAQKL 395
>gi|388519201|gb|AFK47662.1| unknown [Lotus japonicus]
Length = 274
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRARRGQATD HS+AER+RR +I E+++ LQ +VP KT A MLDEII+YV+ LQ Q
Sbjct: 157 VRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQ 216
Query: 311 VKVLSM 316
V+ LS+
Sbjct: 217 VEFLSL 222
>gi|297814329|ref|XP_002875048.1| hypothetical protein ARALYDRAFT_912247 [Arabidopsis lyrata subsp.
lyrata]
gi|297320885|gb|EFH51307.1| hypothetical protein ARALYDRAFT_912247 [Arabidopsis lyrata subsp.
lyrata]
Length = 403
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 52/67 (77%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K V +R +A H+ +ER RR++I +RMK LQ+LVPN++KTDKASMLDE+I+Y+K LQ
Sbjct: 206 KSSVSTKRSRAAAIHNQSERKRRDKINQRMKILQKLVPNSSKTDKASMLDEVIEYLKQLQ 265
Query: 309 LQVKVLS 315
QV ++S
Sbjct: 266 AQVSMMS 272
>gi|224053374|ref|XP_002297788.1| predicted protein [Populus trichocarpa]
gi|222845046|gb|EEE82593.1| predicted protein [Populus trichocarpa]
Length = 111
Score = 79.3 bits (194), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
R RA+RG AT P SIAER+RR RI+ERM+ LQ+LVPN +K T+ + MLD +DY+K LQ
Sbjct: 31 RTRAKRGCATHPRSIAERVRRTRISERMRKLQDLVPNMDKQTNTSDMLDLAVDYIKDLQR 90
Query: 310 QVKVLSMSR 318
QV+ LS R
Sbjct: 91 QVQTLSEIR 99
>gi|357509821|ref|XP_003625199.1| Transcription factor bHLH130 [Medicago truncatula]
gi|355500214|gb|AES81417.1| Transcription factor bHLH130 [Medicago truncatula]
Length = 319
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
+RA+RG AT P S+AER+RR RI+ERM+ LQE+VPN +K T + MLD ++Y+K LQ Q
Sbjct: 243 IRAKRGFATHPRSLAERVRRTRISERMRKLQEIVPNIDKQTCTSEMLDLAVEYIKDLQKQ 302
Query: 311 VKVLSMSR 318
+K +S R
Sbjct: 303 LKTMSAKR 310
>gi|297852830|ref|XP_002894296.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297340138|gb|EFH70555.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 378
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN-KTDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR +I+ERM+ LQ+LVPN + +T+ A MLD + Y+K LQ
Sbjct: 302 KIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQE 361
Query: 310 QVKVLSMSR 318
QVK L +R
Sbjct: 362 QVKTLEETR 370
>gi|226510391|ref|NP_001150862.1| LOC100284495 [Zea mays]
gi|195642440|gb|ACG40688.1| helix-loop-helix DNA-binding domain containing protein [Zea mays]
Length = 359
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRARRG AT P SIAER RR RI++R+K LQ+LVPN +K T+ + MLD +DY+K L+
Sbjct: 279 RVRARRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDLAVDYIKELKD 338
Query: 310 QVKVL 314
QV+ L
Sbjct: 339 QVEKL 343
>gi|357127136|ref|XP_003565241.1| PREDICTED: transcription factor bHLH113-like [Brachypodium
distachyon]
Length = 257
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
DP S ++RRERI+ER+K LQ+LVPN K D +ML++ I YVKFLQLQVKVL+
Sbjct: 171 DPQSAVAKVRRERISERLKVLQDLVPNGTKVDMVTMLEKAITYVKFLQLQVKVLA 225
>gi|357126351|ref|XP_003564851.1| PREDICTED: transcription factor bHLH128-like [Brachypodium
distachyon]
Length = 373
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER RR RI++R++ LQ+LVPN +K T+ + MLD +DY+K LQ
Sbjct: 294 RVRAKRGCATHPRSIAERERRTRISKRLRKLQDLVPNMDKQTNTSDMLDIAVDYIKVLQD 353
Query: 310 QVKVL 314
Q++ L
Sbjct: 354 QIEKL 358
>gi|223975981|gb|ACN32178.1| unknown [Zea mays]
gi|413946283|gb|AFW78932.1| putative HLH DNA-binding domain superfamily protein isoform 1 [Zea
mays]
gi|413946284|gb|AFW78933.1| putative HLH DNA-binding domain superfamily protein isoform 2 [Zea
mays]
Length = 396
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 237 GGGGGNTPAQ-QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKAS 295
G GG P+ Q K R R R ++DP ++A RLRRER++ER++ LQ LVP ++ D AS
Sbjct: 264 GAAGGEPPSSSQNKPRRRNVR-ISSDPQTVAARLRRERVSERLRVLQRLVPGGSRMDTAS 322
Query: 296 MLDEIIDYVKFLQLQVKVL 314
MLDE Y+KFL+ QVK L
Sbjct: 323 MLDEAAGYLKFLKSQVKAL 341
>gi|293331875|ref|NP_001169147.1| uncharacterized protein LOC100382992 [Zea mays]
gi|223975155|gb|ACN31765.1| unknown [Zea mays]
Length = 395
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 237 GGGGGNTPAQ-QPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKAS 295
G GG P+ Q K R R R ++DP ++A RLRRER++ER++ LQ LVP ++ D AS
Sbjct: 265 GAAGGEPPSSSQNKPRRRNVR-ISSDPQTVAARLRRERVSERLRVLQRLVPGGSRMDTAS 323
Query: 296 MLDEIIDYVKFLQLQVKVL 314
MLDE Y+KFL+ QVK L
Sbjct: 324 MLDEAAGYLKFLKSQVKAL 342
>gi|356513103|ref|XP_003525253.1| PREDICTED: transcription factor BEE 3-like [Glycine max]
Length = 246
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQ 310
VRA+RGQATD HS+AER+RR +I E+++ LQ +VP KT A MLDEII+YV+ LQ Q
Sbjct: 127 VRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 186
Query: 311 VKVLSMSRLGGAA 323
V+ LSM +L A+
Sbjct: 187 VEFLSM-KLNAAS 198
>gi|255572100|ref|XP_002526990.1| DNA binding protein, putative [Ricinus communis]
gi|223533625|gb|EEF35362.1| DNA binding protein, putative [Ricinus communis]
Length = 189
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 55/71 (77%), Gaps = 3/71 (4%)
Query: 246 QQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIID 302
++PK+ VRA+RGQATD HS+AER+RRERI E+++ LQ+LVP KT A MLD II+
Sbjct: 113 EKPKEVIHVRAKRGQATDSHSLAERVRRERINEKLRCLQDLVPGCYKTMGMAVMLDVIIN 172
Query: 303 YVKFLQLQVKV 313
YV+ LQ Q++V
Sbjct: 173 YVQSLQNQIEV 183
>gi|374412422|gb|AEZ49169.1| helix-loop-helix DNA-binding domain containing protein [Wolffia
australiana]
Length = 368
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQVKV 313
+R ++++ H+++ER RR+RI E+M+ALQELVP NK DKASML+E+I+Y+K LQ+QV+
Sbjct: 217 KRSRSSEVHNLSERRRRDRINEKMRALQELVPCCNKQVDKASMLEEVIEYLKSLQMQVQA 276
Query: 314 LSM 316
+SM
Sbjct: 277 MSM 279
>gi|326519825|dbj|BAK00285.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 378
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER RR RI++R++ LQ+LVPN +K T+ + MLD +DY+K LQ
Sbjct: 299 RVRAKRGCATHPRSIAERERRTRISKRLRRLQDLVPNMDKQTNTSDMLDIAVDYIKVLQD 358
Query: 310 QVKVL 314
Q++ L
Sbjct: 359 QIEKL 363
>gi|342298442|emb|CBY05411.1| ALCATRAZ-like protein [Aethionema carneum]
Length = 224
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 252 VRAR-RGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQ 310
VR R R H+++E+ RR +I E+MKALQ+L+PN+NKTDKASMLDE I+Y+K LQLQ
Sbjct: 97 VRTRQRSIDAKFHNLSEKRRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQ 156
Query: 311 VKVLSM 316
V+ L++
Sbjct: 157 VQALAV 162
>gi|225453146|ref|XP_002272414.1| PREDICTED: putative transcription factor bHLH086 [Vitis vinifera]
gi|296087164|emb|CBI33538.3| unnamed protein product [Vitis vinifera]
Length = 347
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 4/67 (5%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL- 319
DP S+A + RRERI+ER+K LQ+LVPN +K D +ML++ I YVKFLQLQVKVL+
Sbjct: 256 DPQSLAAKNRRERISERLKILQDLVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFW 315
Query: 320 ---GGAA 323
GG A
Sbjct: 316 PVQGGKA 322
>gi|147821091|emb|CAN75381.1| hypothetical protein VITISV_027596 [Vitis vinifera]
Length = 328
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 69/141 (48%), Gaps = 48/141 (34%)
Query: 224 NQTQAQASGSTGGGGGGGNTPAQQPKQ---RVRARRGQATDPHSIAERL----------- 269
++ + +AS G + PA+Q KQ VRARRGQATD HS+AER+
Sbjct: 126 SKAELEASSVAGEKPAEESKPAEQSKQDYIHVRARRGQATDSHSLAERVMQFYTLLIFCF 185
Query: 270 ---------------------------------RRERIAERMKALQELVPNANKT-DKAS 295
RRE+I+ERMK LQ+LVP NK KA
Sbjct: 186 LVVPQMPKLKRIGLSWNSRSRCRCIGVSVYINARREKISERMKILQDLVPGCNKVIGKAL 245
Query: 296 MLDEIIDYVKFLQLQVKVLSM 316
+LDEII+Y++ LQ QV+ LSM
Sbjct: 246 VLDEIINYIQSLQRQVEFLSM 266
>gi|218184992|gb|EEC67419.1| hypothetical protein OsI_34609 [Oryza sativa Indica Group]
Length = 465
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 50/62 (80%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQV 311
+ +R +A H+ +ER RR+RI ++MK LQ+LVPN++KTDKASMLDE+IDY+K LQ QV
Sbjct: 269 ISTKRSRAAAIHNESERKRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQV 328
Query: 312 KV 313
+V
Sbjct: 329 QV 330
>gi|449436269|ref|XP_004135915.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus]
gi|449521930|ref|XP_004167982.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus]
Length = 419
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 2/72 (2%)
Query: 246 QQP-KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDY 303
Q+P ++RA+RG AT P SIAER+RR RI+ER+K LQEL P+ +K T A ML+ ++Y
Sbjct: 335 QEPVPHQIRAKRGCATHPRSIAERMRRTRISERIKKLQELFPDMDKQTSTADMLELAVEY 394
Query: 304 VKFLQLQVKVLS 315
+K LQ QVK L+
Sbjct: 395 IKGLQRQVKTLT 406
>gi|449461837|ref|XP_004148648.1| PREDICTED: transcription factor HEC2-like [Cucumis sativus]
gi|449524665|ref|XP_004169342.1| PREDICTED: transcription factor HEC2-like [Cucumis sativus]
Length = 223
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 5/70 (7%)
Query: 246 QQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
++PK+R VR + DP SIA RLRRERI+E+++ LQ LVP K D ASMLDE I YV
Sbjct: 106 RKPKRRNVRI----SDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYV 161
Query: 305 KFLQLQVKVL 314
KFL+ Q+++L
Sbjct: 162 KFLKRQIRLL 171
>gi|222632408|gb|EEE64540.1| hypothetical protein OsJ_19392 [Oryza sativa Japonica Group]
Length = 388
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 234 TGGGGGGGNTP---AQQPKQRVRARRGQ-ATDPHSIAERLRRERIAERMKALQELVPNAN 289
T GG + P A QP QR R + + ++DP ++A RLRRER++ER++ LQ LVP +
Sbjct: 247 TLGGAASASDPSFAAPQPPQRPRRKNVRISSDPQTVAARLRRERVSERLRVLQRLVPGGS 306
Query: 290 KTDKASMLDEIIDYVKFLQLQVKVL 314
K D A+MLDE Y+KFL+ Q++ L
Sbjct: 307 KMDTATMLDEAASYLKFLKSQLEAL 331
>gi|357500329|ref|XP_003620453.1| Transcription factor BEE [Medicago truncatula]
gi|355495468|gb|AES76671.1| Transcription factor BEE [Medicago truncatula]
Length = 263
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 71/136 (52%), Gaps = 21/136 (15%)
Query: 226 TQAQASGSTGGGGGGGNTPAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQE 283
++ + SG G T ++ K+ VRARRGQATD HS+AER+RR +I E++K LQ
Sbjct: 127 SKTKLSGGRGKRVKSYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQN 186
Query: 284 LVPNANKT-DKASMLDEIIDYVKFLQLQVKVLS--------------MSRLGGAAAVAPL 328
+VP KT A MLDEII+Y FL L++ S M R A+ A
Sbjct: 187 IVPGCYKTMGMAVMLDEIINY--FLSLKLTAASTYYDFNSEADDLETMQR--ARASEAKE 242
Query: 329 VADMSSEGGGGGDCIQ 344
+A +G GG C Q
Sbjct: 243 LARYKRDGYGGISCFQ 258
>gi|357120420|ref|XP_003561925.1| PREDICTED: uncharacterized protein LOC100831403 [Brachypodium
distachyon]
Length = 337
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%)
Query: 260 TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
TDP S+ R RRE+I ER+K LQ LVPN K D ++ML+E + Y+KF+QLQ+K+LS +
Sbjct: 254 TDPQSLYARKRREKINERLKVLQNLVPNGTKVDISTMLEEAVHYIKFMQLQIKLLSSDDM 313
Query: 320 GGAAAVA 326
A +A
Sbjct: 314 WMFAPIA 320
>gi|13486646|dbj|BAB39884.1| unknown protein [Oryza sativa Japonica Group]
Length = 294
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 262 PHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
P S A ++RRERI+ER+K LQ+LVPN K D +ML++ I+YVKFLQLQVKVL+
Sbjct: 208 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEF 265
>gi|242058469|ref|XP_002458380.1| hypothetical protein SORBIDRAFT_03g032520 [Sorghum bicolor]
gi|241930355|gb|EES03500.1| hypothetical protein SORBIDRAFT_03g032520 [Sorghum bicolor]
Length = 406
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 53/71 (74%), Gaps = 5/71 (7%)
Query: 245 AQQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
A++P+++ VR ++DP ++A RLRRER++ER++ LQ+LVP +K D ASMLDE Y
Sbjct: 282 AEKPRRKNVRI----SSDPQTVAARLRRERVSERLRVLQKLVPGGSKMDTASMLDEAASY 337
Query: 304 VKFLQLQVKVL 314
+KFL+ QV+ L
Sbjct: 338 LKFLKSQVQAL 348
>gi|115434094|ref|NP_001041805.1| Os01g0111500 [Oryza sativa Japonica Group]
gi|113531336|dbj|BAF03719.1| Os01g0111500 [Oryza sativa Japonica Group]
gi|215766224|dbj|BAG98452.1| unnamed protein product [Oryza sativa Japonica Group]
gi|323388931|gb|ADX60270.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 295
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 262 PHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
P S A ++RRERI+ER+K LQ+LVPN K D +ML++ I+YVKFLQLQVKVL+
Sbjct: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEF 266
>gi|356548947|ref|XP_003542860.1| PREDICTED: transcription factor bHLH130-like [Glycine max]
Length = 438
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER RR RI+ R+K LQ+L P ++K T A MLD ++Y+K LQ
Sbjct: 359 KIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQK 418
Query: 310 QVKVLSMSR 318
QVK+L +R
Sbjct: 419 QVKILRDTR 427
>gi|357143431|ref|XP_003572919.1| PREDICTED: transcription factor SPATULA-like [Brachypodium
distachyon]
Length = 312
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 48/54 (88%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
H+++E+ RR RI E+MKALQ LVPN++KTDKASMLD+ I+Y+K LQLQV++LSM
Sbjct: 70 HNLSEKRRRCRINEKMKALQSLVPNSSKTDKASMLDDAIEYLKQLQLQVQMLSM 123
>gi|218187376|gb|EEC69803.1| hypothetical protein OsI_00101 [Oryza sativa Indica Group]
Length = 288
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 45/61 (73%)
Query: 262 PHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGG 321
P S A ++RRERI+ER+K LQ+LVPN K D +ML++ I+YVKFLQLQVKVL+
Sbjct: 202 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEFWP 261
Query: 322 A 322
A
Sbjct: 262 A 262
>gi|356495899|ref|XP_003516808.1| PREDICTED: transcription factor UNE10-like [Glycine max]
Length = 458
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 60/80 (75%), Gaps = 2/80 (2%)
Query: 249 KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308
K V +R +A H+ +ER RR++I +RMK LQ+LVPN++K+DKASMLDE+I+Y+K LQ
Sbjct: 261 KSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKSDKASMLDEVIEYLKQLQ 320
Query: 309 LQVKVLSMSRLGGAAAVAPL 328
Q++++ +R+ ++ + PL
Sbjct: 321 AQLQMI--NRINMSSMMLPL 338
>gi|222617607|gb|EEE53739.1| hypothetical protein OsJ_00092 [Oryza sativa Japonica Group]
Length = 310
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 44/54 (81%)
Query: 262 PHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
P S A ++RRERI+ER+K LQ+LVPN K D +ML++ I+YVKFLQLQVKVL+
Sbjct: 224 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLA 277
>gi|140084346|gb|ABO84932.1| Rhd6-like 3 [Physcomitrella patens]
Length = 67
Score = 77.4 bits (189), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 42/58 (72%)
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
G ATDP S+ R RRE+I ER+K LQ LVPN K D +MLDE I YV+FLQLQV +L
Sbjct: 1 GSATDPQSVYARHRREKINERLKTLQHLVPNGAKVDIVTMLDEAIHYVQFLQLQVTLL 58
>gi|62701739|gb|AAX92812.1| expressed protein [Oryza sativa Japonica Group]
Length = 507
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 66/139 (47%), Gaps = 53/139 (38%)
Query: 231 SGSTGGGGGGG----NTPAQQPKQ--RVRARRGQATDPHSIAERL--------------- 269
+G G GG G + + PK VRARRGQATD HS+AER+
Sbjct: 251 AGDAGHGGNGKGKVLDAAGEPPKDYIHVRARRGQATDSHSLAERVKAAGIDAANHNFFFS 310
Query: 270 -----------------RRERIAERMKALQELVPNANK---------------TDKASML 297
RRE+I+ERMK LQ+LVP NK T KA ML
Sbjct: 311 SILAFADAIAAVFHLQVRREKISERMKLLQDLVPGCNKVAKFSQKINLNFTLVTGKAVML 370
Query: 298 DEIIDYVKFLQLQVKVLSM 316
DEII+YV+ LQ QV+ LSM
Sbjct: 371 DEIINYVQSLQRQVEFLSM 389
>gi|226492870|ref|NP_001146411.1| uncharacterized protein LOC100279991 [Zea mays]
gi|219887061|gb|ACL53905.1| unknown [Zea mays]
Length = 254
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%), Gaps = 3/60 (5%)
Query: 270 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 329
RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV+++SM G + P++
Sbjct: 12 RRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSM---GSGLCIPPML 68
>gi|108864345|gb|ABA93365.2| expressed protein [Oryza sativa Japonica Group]
Length = 508
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 66/139 (47%), Gaps = 53/139 (38%)
Query: 231 SGSTGGGGGGG----NTPAQQPKQ--RVRARRGQATDPHSIAERL--------------- 269
+G G GG G + + PK VRARRGQATD HS+AER+
Sbjct: 251 AGDAGHGGNGKGKVLDAAGEPPKDYIHVRARRGQATDSHSLAERVKAAGIDAANHNFFFS 310
Query: 270 -----------------RRERIAERMKALQELVPNANK---------------TDKASML 297
RRE+I+ERMK LQ+LVP NK T KA ML
Sbjct: 311 SILAFADAIAAVFHLQVRREKISERMKLLQDLVPGCNKVAKFSQKINLNFTLVTGKAVML 370
Query: 298 DEIIDYVKFLQLQVKVLSM 316
DEII+YV+ LQ QV+ LSM
Sbjct: 371 DEIINYVQSLQRQVEFLSM 389
>gi|414879181|tpg|DAA56312.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 231
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRARRG AT P SIAER RR RI++R+K LQ+LVPN +K T+ + MLD ++Y+K L+
Sbjct: 151 RVRARRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDLAVEYIKELKD 210
Query: 310 QVKVL 314
QV+ L
Sbjct: 211 QVEKL 215
>gi|297606176|ref|NP_001058071.2| Os06g0613500 [Oryza sativa Japonica Group]
gi|255677227|dbj|BAF19985.2| Os06g0613500, partial [Oryza sativa Japonica Group]
Length = 178
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%), Gaps = 5/77 (6%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQVK 312
ARRGQATD HS+AER RRE+I RM+ L+ELVP +K A +LDEII++V+ LQ QV+
Sbjct: 1 ARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVE 60
Query: 313 VLSMSRLGGAAAVAPLV 329
LSM RL AAV P V
Sbjct: 61 YLSM-RL---AAVNPRV 73
>gi|125526612|gb|EAY74726.1| hypothetical protein OsI_02617 [Oryza sativa Indica Group]
Length = 386
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 66/139 (47%), Gaps = 53/139 (38%)
Query: 231 SGSTGGGGGGG----NTPAQQPKQ--RVRARRGQATDPHSIAERL--------------- 269
+G G GG G + + PK VRARRGQATD HS+AER+
Sbjct: 130 AGDAGHGGNGKGKVLDAAGEPPKDYIHVRARRGQATDSHSLAERVKAAGIDAANHNFFFS 189
Query: 270 -----------------RRERIAERMKALQELVPNANK---------------TDKASML 297
RRE+I+ERMK LQ+LVP NK T KA ML
Sbjct: 190 SILAFADAIAAVFHLQVRREKISERMKLLQDLVPGCNKVAKFSQKINLNFTLVTGKAVML 249
Query: 298 DEIIDYVKFLQLQVKVLSM 316
DEII+YV+ LQ QV+ LSM
Sbjct: 250 DEIINYVQSLQRQVEFLSM 268
>gi|356564005|ref|XP_003550247.1| PREDICTED: transcription factor BEE 1-like [Glycine max]
Length = 268
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 253 RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQV 311
RARRGQATD H++AER+RR +I E+++ LQ +VP KT A MLDEII+YV+ LQ QV
Sbjct: 152 RARRGQATDSHNLAERVRRGKINEKLRYLQNIVPGCYKTMSMAVMLDEIINYVQSLQHQV 211
Query: 312 KVLSM 316
+ LS+
Sbjct: 212 EFLSL 216
>gi|140084368|gb|ABO84934.1| Rhd6-like 5 [Physcomitrella patens]
Length = 67
Score = 77.0 bits (188), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/63 (58%), Positives = 44/63 (69%)
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSM 316
G ATDP S+ R RRE+I ER+K+LQ LVPN K D +MLDE I YVKFLQ QV++L
Sbjct: 1 GSATDPQSVYARHRREKINERLKSLQNLVPNGAKVDIVTMLDEAIHYVKFLQNQVELLKS 60
Query: 317 SRL 319
L
Sbjct: 61 DEL 63
>gi|125527433|gb|EAY75547.1| hypothetical protein OsI_03453 [Oryza sativa Indica Group]
Length = 394
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 240 GGNTPAQQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLD 298
G A +P+++ VR ++DP ++A RLRRER+++R++ LQ+LVP NK D ASMLD
Sbjct: 267 GTEAAADKPRRKNVRI----SSDPQTVAARLRRERVSDRLRVLQKLVPGGNKMDTASMLD 322
Query: 299 EIIDYVKFLQLQVKVL 314
E Y+KFL+ QV+ L
Sbjct: 323 EAASYLKFLKSQVQKL 338
>gi|414877782|tpg|DAA54913.1| TPA: hypothetical protein ZEAMMB73_144255 [Zea mays]
Length = 304
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315
+P SI R RRERI ER+K LQ LVPN K D ++ML+E + YVKFLQLQ+++LS
Sbjct: 222 EPQSIYARKRRERINERLKVLQSLVPNGTKVDMSTMLEEAVHYVKFLQLQIRLLS 276
>gi|224057820|ref|XP_002299340.1| predicted protein [Populus trichocarpa]
gi|222846598|gb|EEE84145.1| predicted protein [Populus trichocarpa]
Length = 222
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 9/82 (10%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQLQ 310
VRARRG+ATD HS+AER+RRERI+ +MK LQ LVP ++ T KA +LDEII YV+ L+
Sbjct: 77 VRARRGEATDSHSLAERVRRERISAKMKLLQSLVPGCDQITGKALILDEIIRYVQSLK-- 134
Query: 311 VKVLSMSRLGGAAAVAPLVADM 332
R+G A LV +M
Sbjct: 135 ------DRIGSLEAELVLVNEM 150
>gi|115439485|ref|NP_001044022.1| Os01g0707500 [Oryza sativa Japonica Group]
gi|19571105|dbj|BAB86530.1| bHLH transcription factor-like [Oryza sativa Japonica Group]
gi|20804650|dbj|BAB92339.1| bHLH transcription factor-like [Oryza sativa Japonica Group]
gi|113533553|dbj|BAF05936.1| Os01g0707500 [Oryza sativa Japonica Group]
gi|125571756|gb|EAZ13271.1| hypothetical protein OsJ_03197 [Oryza sativa Japonica Group]
gi|215741088|dbj|BAG97583.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 393
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 240 GGNTPAQQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLD 298
G A +P+++ VR ++DP ++A RLRRER+++R++ LQ+LVP NK D ASMLD
Sbjct: 266 GTEAAADKPRRKNVRI----SSDPQTVAARLRRERVSDRLRVLQKLVPGGNKMDTASMLD 321
Query: 299 EIIDYVKFLQLQVKVL 314
E Y+KFL+ QV+ L
Sbjct: 322 EAASYLKFLKSQVQKL 337
>gi|225446765|ref|XP_002278399.1| PREDICTED: transcription factor PIF5-like [Vitis vinifera]
Length = 531
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 45/51 (88%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVK 305
RR +A + H+++ER RR+RI E+MKALQEL+P++NK+DKASMLDE I+Y+K
Sbjct: 335 RRSRAAEVHNLSERRRRDRINEKMKALQELIPHSNKSDKASMLDEAIEYLK 385
>gi|302143504|emb|CBI22065.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 45/51 (88%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVK 305
RR +A + H+++ER RR+RI E+MKALQEL+P++NK+DKASMLDE I+Y+K
Sbjct: 335 RRSRAAEVHNLSERRRRDRINEKMKALQELIPHSNKSDKASMLDEAIEYLK 385
>gi|356542383|ref|XP_003539646.1| PREDICTED: transcription factor bHLH130-like [Glycine max]
Length = 434
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER RR RI+ R+K LQ+L P +K T A MLD ++Y+K LQ
Sbjct: 355 KIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKTDKQTSTADMLDLAVEYIKDLQK 414
Query: 310 QVKVLSMSR 318
QVK+L +R
Sbjct: 415 QVKMLRDTR 423
>gi|168056355|ref|XP_001780186.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668419|gb|EDQ55027.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 144
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIID 302
P+ P + +RA RG AT P SIAER+RR +I+ERMK LQ+LVP+ ++ T+ A MLD+ ++
Sbjct: 55 PSAVPLKTIRANRGHATHPRSIAERVRRGKISERMKKLQDLVPSMDRQTNTADMLDDAVE 114
Query: 303 YVKFLQLQVKVLS 315
YVK LQ QV+ LS
Sbjct: 115 YVKQLQQQVQELS 127
>gi|168019991|ref|XP_001762527.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686260|gb|EDQ72650.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 594
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Query: 247 QPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVK 305
+PK+R VR + DP S+A R RRERI++R++ LQ LVP K D ASMLDE I YVK
Sbjct: 430 RPKRRNVRISK----DPQSVAARHRRERISDRIRVLQRLVPGGTKMDTASMLDEAIHYVK 485
Query: 306 FLQLQVKVL 314
FL+LQ++ L
Sbjct: 486 FLKLQLQTL 494
>gi|140084376|gb|ABO84935.1| Rhd6-like 6 [Physcomitrella patens]
Length = 67
Score = 76.3 bits (186), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 42/58 (72%)
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
G ATDP S+ R RRE+I ER+K LQ LVPN K D +MLDE I YVKFLQ QV++L
Sbjct: 1 GSATDPQSVYARHRREKINERLKNLQNLVPNGAKVDIVTMLDEAIHYVKFLQTQVELL 58
>gi|388503832|gb|AFK39982.1| unknown [Medicago truncatula]
Length = 406
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI++R+K LQ L P ++K T A MLD ++Y+K LQ
Sbjct: 321 KIRAKRGFATHPRSIAERVRRTRISDRIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQE 380
Query: 310 QVKVLS 315
QV++L+
Sbjct: 381 QVQILT 386
>gi|357457619|ref|XP_003599090.1| DNA binding protein [Medicago truncatula]
gi|355488138|gb|AES69341.1| DNA binding protein [Medicago truncatula]
Length = 403
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI++R+K LQ L P ++K T A MLD ++Y+K LQ
Sbjct: 318 KIRAKRGFATHPRSIAERVRRTRISDRIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQE 377
Query: 310 QVKVLS 315
QV++L+
Sbjct: 378 QVQILT 383
>gi|42567227|ref|NP_194608.3| transcription factor bHLH23 [Arabidopsis thaliana]
gi|75313939|sp|Q9SVU6.1|BH023_ARATH RecName: Full=Transcription factor bHLH23; AltName: Full=Basic
helix-loop-helix protein 23; Short=AtbHLH23; Short=bHLH
23; AltName: Full=Transcription factor EN 107; AltName:
Full=bHLH transcription factor bHLH023
gi|4218119|emb|CAA22973.1| putative protein [Arabidopsis thaliana]
gi|7269734|emb|CAB81467.1| putative protein [Arabidopsis thaliana]
gi|225898825|dbj|BAH30543.1| hypothetical protein [Arabidopsis thaliana]
gi|332660145|gb|AEE85545.1| transcription factor bHLH23 [Arabidopsis thaliana]
Length = 413
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
++R +A H ++ER RR++I E MKALQEL+P KTD++SMLD++I+YVK LQ Q+++
Sbjct: 273 SKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQM 332
Query: 314 LSMSRLGGAAAVAPLV 329
SM G + P++
Sbjct: 333 FSM----GHVMIPPMM 344
>gi|414880798|tpg|DAA57929.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 1
[Zea mays]
gi|414880799|tpg|DAA57930.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 2
[Zea mays]
Length = 422
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 52/70 (74%), Gaps = 5/70 (7%)
Query: 246 QQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
++P+++ VR ++DP ++A RLRRER++ER++ LQ+LVP +K D ASMLDE Y+
Sbjct: 282 ERPRRKNVRI----SSDPQTVAARLRRERVSERLRVLQKLVPGGSKMDTASMLDEAASYL 337
Query: 305 KFLQLQVKVL 314
KFL+ QV+ L
Sbjct: 338 KFLKSQVQAL 347
>gi|89257428|gb|ABD64920.1| bHLH transcription factor, putative [Brassica oleracea]
Length = 155
Score = 76.3 bits (186), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 55/76 (72%), Gaps = 3/76 (3%)
Query: 244 PAQQPKQ--RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
P + PK VRARRGQ D H AER+RRE+I+E + LQ+LVP++++ T KA LDEI
Sbjct: 11 PPEPPKDYIHVRARRGQPADSHRFAERVRREKISEMLTLLQDLVPDSSRITGKADSLDEI 70
Query: 301 IDYVKFLQLQVKVLSM 316
I+YV+ L+ QV++L M
Sbjct: 71 INYVQSLKRQVELLYM 86
>gi|341941279|gb|AEL12217.1| putative cryptochrome-interacting basic helix-loop-helix 5 [Beta
vulgaris]
Length = 225
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 252 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD-KASMLDEIIDYVKFLQLQ 310
VRARRG+A D HS+AER+RR++I+ +MK LQ LVP +KT K +LD II+Y+ LQ Q
Sbjct: 136 VRARRGEAVDSHSLAERVRRQKISSKMKLLQSLVPGCDKTTGKVPILDTIINYIHSLQDQ 195
Query: 311 VKVL 314
VK L
Sbjct: 196 VKSL 199
>gi|255548227|ref|XP_002515170.1| hypothetical protein RCOM_1343120 [Ricinus communis]
gi|223545650|gb|EEF47154.1| hypothetical protein RCOM_1343120 [Ricinus communis]
Length = 584
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 54/67 (80%), Gaps = 3/67 (4%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 322
HS++ER RR++I ++M+ALQ L+PN++K DKASMLD+ I+Y+K LQLQ++++SM G+
Sbjct: 385 HSLSERKRRDKINKKMRALQALIPNSDKVDKASMLDKAIEYLKTLQLQLQMMSMR---GS 441
Query: 323 AAVAPLV 329
+ P++
Sbjct: 442 CYMPPMM 448
>gi|242055293|ref|XP_002456792.1| hypothetical protein SORBIDRAFT_03g042860 [Sorghum bicolor]
gi|241928767|gb|EES01912.1| hypothetical protein SORBIDRAFT_03g042860 [Sorghum bicolor]
Length = 361
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER RR RI++R+K LQ+LVPN +K T+ + MLD +DY+K L+
Sbjct: 280 RVRAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDLAVDYIKELKD 339
Query: 310 QVKVL 314
+V+ L
Sbjct: 340 RVEKL 344
>gi|357519927|ref|XP_003630252.1| Transcription factor HEC3 [Medicago truncatula]
gi|355524274|gb|AET04728.1| Transcription factor HEC3 [Medicago truncatula]
Length = 275
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 246 QQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
++PK+R VR + DP S+A R RRERI+E+++ LQ LVP K D ASMLDE I YV
Sbjct: 111 RKPKRRNVRI----SEDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYV 166
Query: 305 KFLQLQVKVL 314
KFL+ Q+K+L
Sbjct: 167 KFLKRQIKLL 176
>gi|356557136|ref|XP_003546874.1| PREDICTED: transcription factor bHLH128-like [Glycine max]
Length = 445
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER RR RI+ER+K LQ+L P + K T A MLD ++++K LQ
Sbjct: 360 KIRAKRGFATHPRSIAERERRTRISERIKKLQDLFPRSEKPTSTADMLDLAVEHIKDLQQ 419
Query: 310 QVKVLS 315
QV++LS
Sbjct: 420 QVQILS 425
>gi|297820750|ref|XP_002878258.1| phytochrome-interacting factor 5 [Arabidopsis lyrata subsp. lyrata]
gi|297324096|gb|EFH54517.1| phytochrome-interacting factor 5 [Arabidopsis lyrata subsp. lyrata]
Length = 439
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI ERMKALQEL+P+ +KTDKAS+LDE IDY+K LQ+Q++V+
Sbjct: 251 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQMQLQVM 310
Query: 315 SM 316
M
Sbjct: 311 WM 312
>gi|388520611|gb|AFK48367.1| unknown [Lotus japonicus]
Length = 251
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P S+AER+RR RI+E++K L+ L P ++K T A MLD ++Y+K LQ
Sbjct: 166 KIRAKRGFATHPRSVAERVRRTRISEKIKKLEGLFPKSDKQTSTADMLDSAVEYIKDLQE 225
Query: 310 QVKVLSMSR 318
QVK L+ R
Sbjct: 226 QVKTLTDCR 234
>gi|356511167|ref|XP_003524301.1| PREDICTED: uncharacterized protein LOC100775296 [Glycine max]
Length = 266
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 246 QQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
++PK+R VR + DP S+A R RRERI+E+++ LQ LVP K D ASMLDE I YV
Sbjct: 121 RKPKRRNVRI----SDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYV 176
Query: 305 KFLQLQVKVL 314
KFL+ Q+++L
Sbjct: 177 KFLKRQIRLL 186
>gi|452030238|gb|AGF92088.1| indehiscent-like protein [Phaseolus vulgaris]
Length = 282
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 246 QQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
++PK+R VR + DP S+A R RRERI+E+++ LQ LVP K D ASMLDE I YV
Sbjct: 134 RKPKRRNVRI----SDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYV 189
Query: 305 KFLQLQVKVL 314
KFL+ Q+++L
Sbjct: 190 KFLKRQIRLL 199
>gi|302757065|ref|XP_002961956.1| hypothetical protein SELMODRAFT_403406 [Selaginella moellendorffii]
gi|300170615|gb|EFJ37216.1| hypothetical protein SELMODRAFT_403406 [Selaginella moellendorffii]
Length = 572
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 46/60 (76%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
R + +P SIA R RR++I+ER++ L++LVP NK D ASMLDE I +VKFLQ+QV++L
Sbjct: 381 RFKETVEPQSIAARQRRKKISERVRELEKLVPGGNKLDTASMLDEAIRFVKFLQIQVQLL 440
>gi|302775426|ref|XP_002971130.1| hypothetical protein SELMODRAFT_411945 [Selaginella moellendorffii]
gi|300161112|gb|EFJ27728.1| hypothetical protein SELMODRAFT_411945 [Selaginella moellendorffii]
Length = 572
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 46/60 (76%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
R + +P SIA R RR++I+ER++ L++LVP NK D ASMLDE I +VKFLQ+QV++L
Sbjct: 381 RFKETVEPQSIAARQRRKKISERVRELEKLVPGGNKLDTASMLDEAIRFVKFLQIQVQLL 440
>gi|357130817|ref|XP_003567042.1| PREDICTED: uncharacterized protein LOC100822019 [Brachypodium
distachyon]
Length = 397
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 44/56 (78%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
++DP ++A RLRRER+++R++ LQ+LVP +K D ASMLDE Y+KFL+ QV+ L
Sbjct: 285 SSDPQTVAARLRRERVSDRLRVLQKLVPGGSKMDTASMLDEAASYLKFLRSQVQAL 340
>gi|255559498|ref|XP_002520769.1| DNA binding protein, putative [Ricinus communis]
gi|223540154|gb|EEF41731.1| DNA binding protein, putative [Ricinus communis]
Length = 340
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 17/127 (13%)
Query: 278 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGG 337
+KALQEL+P++ + + ++DEIIDYVK+LQLQ+K LS SRL G
Sbjct: 231 LKALQELLPHSVEGSQIVVMDEIIDYVKYLQLQMKELSRSRLEGHLC------------- 277
Query: 338 GGGDCIQANGRNPNGAQTTSANDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLA 397
G G +P + N+ L E +AKL++ + +A ++L+ KGL +MP++LA
Sbjct: 278 -SGPAHFLEGYHPYILHQQTMNEPL---EETMAKLLKVNSSAATKFLESKGLFVMPMALA 333
Query: 398 TAISTAT 404
+ A
Sbjct: 334 DRLKQAI 340
>gi|356528585|ref|XP_003532880.1| PREDICTED: uncharacterized protein LOC100777351 [Glycine max]
Length = 271
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 246 QQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
++PK+R VR + DP S+A R RRERI+E+++ LQ LVP K D ASMLDE I YV
Sbjct: 126 RKPKRRNVRI----SDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYV 181
Query: 305 KFLQLQVKVL 314
KFL+ Q+++L
Sbjct: 182 KFLKRQIRLL 191
>gi|356501827|ref|XP_003519725.1| PREDICTED: uncharacterized protein LOC100783804 [Glycine max]
Length = 852
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 48/61 (78%), Gaps = 3/61 (4%)
Query: 253 RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 312
R+R Q H++ ER RR++I +RM+ L+EL+PN NKTDKASMLD+ I+Y+K L+LQ++
Sbjct: 749 RSRNAQV---HNLCERKRRDKINKRMRILKELIPNCNKTDKASMLDDAIEYLKTLKLQIQ 805
Query: 313 V 313
V
Sbjct: 806 V 806
>gi|312283297|dbj|BAJ34514.1| unnamed protein product [Thellungiella halophila]
Length = 448
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 53/63 (84%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
RR +A + H+++ER RR+RI ERMKALQEL+P+ +KTDKAS+LDE IDY+K LQ+Q++V
Sbjct: 256 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQMQLQV 315
Query: 314 LSM 316
+ M
Sbjct: 316 MWM 318
>gi|224083420|ref|XP_002307019.1| predicted protein [Populus trichocarpa]
gi|222856468|gb|EEE94015.1| predicted protein [Populus trichocarpa]
Length = 231
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 5/70 (7%)
Query: 246 QQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
++PK+R VR + DP S+A RLRRERI+E+++ LQ LVP K D ASML+E I YV
Sbjct: 101 RKPKRRNVRI----SDDPQSVAARLRRERISEKIRILQRLVPGGRKMDTASMLEEAIRYV 156
Query: 305 KFLQLQVKVL 314
KFL+ Q+++L
Sbjct: 157 KFLKRQIRLL 166
>gi|357492173|ref|XP_003616375.1| Transcription factor bHLH83 [Medicago truncatula]
gi|355517710|gb|AES99333.1| Transcription factor bHLH83 [Medicago truncatula]
Length = 325
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 23/171 (13%)
Query: 166 DIVDVSSFKSQQGGDGSVQALYNGFTGSLHGSTQPQHFHHLQVRSMPGQTFGAPGPVMNQ 225
++ V F S + GS +++N +G + + ++P ++ +
Sbjct: 127 NLCMVQGFNSFETSSGSYGSMFNSVKEKQNGESSCGWLY--SEPNVPCDDDDDDDSLIKE 184
Query: 226 TQAQASGSTGGGGGGGN---TPAQQP----KQRVRARRGQATDPHSIAERLRRERIAERM 278
++ S GGN T A++P ++ + + + DP S+A + RRERI+ER+
Sbjct: 185 SETHESVLKKRSSMGGNMQPTNAKKPCTAASKKEKHKSNPSKDPQSVAAKNRRERISERL 244
Query: 279 KALQELVPNANK--------------TDKASMLDEIIDYVKFLQLQVKVLS 315
K LQELVPN +K D +ML++ I YVKFLQLQVKVL+
Sbjct: 245 KILQELVPNGSKVDFQISPQSYVAFFVDLVTMLEKAISYVKFLQLQVKVLA 295
>gi|449463597|ref|XP_004149520.1| PREDICTED: transcription factor PIF5-like [Cucumis sativus]
gi|449505798|ref|XP_004162571.1| PREDICTED: transcription factor PIF5-like [Cucumis sativus]
Length = 550
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 54/63 (85%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 313
+RR +A + H+++ER RRERI E+MKALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 347 SRRTRAAEVHNLSERRRRERINEKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 406
Query: 314 LSM 316
+ M
Sbjct: 407 MWM 409
>gi|30689218|ref|NP_565991.2| transcription factor PIF4 [Arabidopsis thaliana]
gi|28201855|sp|Q8W2F3.1|PIF4_ARATH RecName: Full=Transcription factor PIF4; AltName: Full=Basic
helix-loop-helix protein 9; Short=AtbHLH9; Short=bHLH 9;
AltName: Full=Phytochrome-interacting factor 4; AltName:
Full=Short under red-light 2; AltName:
Full=Transcription factor EN 102; AltName: Full=bHLH
transcription factor bHLH009
gi|18026966|gb|AAL55716.1|AF251694_1 putative transcription factor BHLH9 [Arabidopsis thaliana]
gi|21068661|emb|CAD29449.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|222423257|dbj|BAH19605.1| AT2G43010 [Arabidopsis thaliana]
gi|225898591|dbj|BAH30426.1| hypothetical protein [Arabidopsis thaliana]
gi|291506714|gb|ADE08789.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506716|gb|ADE08790.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506718|gb|ADE08791.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506720|gb|ADE08792.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506722|gb|ADE08793.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506724|gb|ADE08794.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506726|gb|ADE08795.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506728|gb|ADE08796.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|330255103|gb|AEC10197.1| transcription factor PIF4 [Arabidopsis thaliana]
Length = 430
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 52/60 (86%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI ERMKALQEL+P+ +KTDKAS+LDE IDY+K LQLQ++V+
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM 313
>gi|30689224|ref|NP_850381.1| transcription factor PIF4 [Arabidopsis thaliana]
gi|330255104|gb|AEC10198.1| transcription factor PIF4 [Arabidopsis thaliana]
Length = 428
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 52/60 (86%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI ERMKALQEL+P+ +KTDKAS+LDE IDY+K LQLQ++V+
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM 313
>gi|297803176|ref|XP_002869472.1| hypothetical protein ARALYDRAFT_913634 [Arabidopsis lyrata subsp.
lyrata]
gi|297315308|gb|EFH45731.1| hypothetical protein ARALYDRAFT_913634 [Arabidopsis lyrata subsp.
lyrata]
Length = 1780
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 47/62 (75%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H++AER RRE+I E+MK LQEL+P NK+ K S LD I+YVK+LQ Q++++
Sbjct: 135 KRSRAAEMHNLAERRRREKINEKMKTLQELIPRCNKSTKVSTLDAAIEYVKWLQSQIQMI 194
Query: 315 SM 316
M
Sbjct: 195 LM 196
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 49/61 (80%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H++AER RRE+I E+MK LQEL+P NK+ K S L+++I+Y+K LQ+Q++++
Sbjct: 1139 KRSRAAEMHNLAERRRREKINEKMKTLQELIPRCNKSTKVSTLEDVIEYMKSLQMQIQMM 1198
Query: 315 S 315
S
Sbjct: 1199 S 1199
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 47/62 (75%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R +A + H++AER RRE+I E+MK LQEL+P NK+ K S L+++I+YVK L++Q++
Sbjct: 1569 KRSRAAEMHNLAERRRREKINEKMKTLQELIPRCNKSTKVSTLEDVIEYVKSLEMQIQHY 1628
Query: 315 SM 316
M
Sbjct: 1629 VM 1630
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 46/61 (75%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R + + H++AER RRE+I E +K LQEL+P NK+ K S LD+ I+YVK+LQ Q++++
Sbjct: 581 KRSRTAEMHNLAERRRREKINENIKTLQELIPRCNKSTKVSTLDDAIEYVKWLQSQIQMM 640
Query: 315 S 315
S
Sbjct: 641 S 641
>gi|356567480|ref|XP_003551947.1| PREDICTED: transcription factor PIF5-like [Glycine max]
Length = 397
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 46/52 (88%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVK 305
ARR +A + H+++ER RR+RI E+MKALQ+L+P+++KTDKASML+E I+Y+K
Sbjct: 197 ARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLK 248
>gi|356528881|ref|XP_003533026.1| PREDICTED: transcription factor bHLH87-like [Glycine max]
Length = 443
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 245 AQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
A++PK R +TDP ++A R RRERI E+++ LQ+LVP +K D ASMLDE +Y+
Sbjct: 330 AEKPK---RKNVKISTDPQTVAARHRRERINEKIRVLQKLVPGGSKMDTASMLDEAANYL 386
Query: 305 KFLQLQVKVL 314
KFL+ QVK L
Sbjct: 387 KFLRSQVKAL 396
>gi|291506702|gb|ADE08783.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506704|gb|ADE08784.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506706|gb|ADE08785.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506708|gb|ADE08786.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506710|gb|ADE08787.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506712|gb|ADE08788.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
Length = 430
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 52/60 (86%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI ERMKALQEL+P+ +KTDKAS+LDE IDY+K LQLQ++V+
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM 313
>gi|222424750|dbj|BAH20328.1| AT2G43010 [Arabidopsis thaliana]
Length = 409
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 52/60 (86%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI ERMKALQEL+P+ +KTDKAS+LDE IDY+K LQLQ++V+
Sbjct: 233 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM 292
>gi|224094310|ref|XP_002310136.1| predicted protein [Populus trichocarpa]
gi|222853039|gb|EEE90586.1| predicted protein [Populus trichocarpa]
Length = 239
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 41/56 (73%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+ DP S+A R RRERI+ERM+ LQ LVP K D ASMLDE I YVKFL+ QV+ L
Sbjct: 164 SKDPQSVAARHRRERISERMRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 219
>gi|30694924|ref|NP_191465.3| transcription factor PIF5 [Arabidopsis thaliana]
gi|79315658|ref|NP_001030889.1| transcription factor PIF5 [Arabidopsis thaliana]
gi|79315685|ref|NP_001030890.1| transcription factor PIF5 [Arabidopsis thaliana]
gi|75297820|sp|Q84LH8.1|PIF5_ARATH RecName: Full=Transcription factor PIF5; AltName: Full=Basic
helix-loop-helix protein 65; Short=AtbHLH65; Short=bHLH
65; AltName: Full=Phytochrome interacting factor-like 6;
AltName: Full=Phytochrome-interacting factor 5; AltName:
Full=Transcription factor EN 103; AltName: Full=bHLH
transcription factor bHLH065
gi|28372349|dbj|BAC56978.1| PIF3 like basic Helix Loop Helix protein [Arabidopsis thaliana]
gi|222424174|dbj|BAH20046.1| AT3G59060 [Arabidopsis thaliana]
gi|225898729|dbj|BAH30495.1| hypothetical protein [Arabidopsis thaliana]
gi|332646348|gb|AEE79869.1| transcription factor PIF5 [Arabidopsis thaliana]
gi|332646349|gb|AEE79870.1| transcription factor PIF5 [Arabidopsis thaliana]
gi|332646350|gb|AEE79871.1| transcription factor PIF5 [Arabidopsis thaliana]
Length = 444
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI ERMKALQEL+P+ ++TDKAS+LDE IDY+K LQ+Q++V+
Sbjct: 253 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVM 312
Query: 315 SM 316
M
Sbjct: 313 WM 314
>gi|30694919|ref|NP_851021.1| transcription factor PIF5 [Arabidopsis thaliana]
gi|7529749|emb|CAB86934.1| putative protein [Arabidopsis thaliana]
gi|332646347|gb|AEE79868.1| transcription factor PIF5 [Arabidopsis thaliana]
Length = 442
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI ERMKALQEL+P+ ++TDKAS+LDE IDY+K LQ+Q++V+
Sbjct: 253 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVM 312
Query: 315 SM 316
M
Sbjct: 313 WM 314
>gi|140084395|gb|ABO84937.1| indehiscent 1 [Physcomitrella patens]
Length = 67
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 43/61 (70%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318
+ DP S+A R RRERI++R++ LQ LVP K D ASMLDE I YVKFL+LQ++V
Sbjct: 3 SKDPQSVAARHRRERISDRIRVLQRLVPGGTKMDTASMLDEAIHYVKFLKLQLQVCDTCN 62
Query: 319 L 319
L
Sbjct: 63 L 63
>gi|20127070|gb|AAM10954.1|AF488598_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 442
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 53/62 (85%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
RR +A + H+++ER RR+RI ERMKALQEL+P+ ++TDKAS+LDE IDY+K LQ+Q++V+
Sbjct: 253 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVM 312
Query: 315 SM 316
M
Sbjct: 313 WM 314
>gi|356571031|ref|XP_003553685.1| PREDICTED: uncharacterized protein LOC100784724 [Glycine max]
Length = 518
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 56/76 (73%), Gaps = 4/76 (5%)
Query: 245 AQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
+Q ++ R +R + + H+++E+ RRE+I ++M+ L++L+PN NK DKASMLD+ IDY+
Sbjct: 323 VKQDREGNRVKRSRNPEVHNLSEKKRREKINKKMRTLKDLIPNCNKVDKASMLDDAIDYL 382
Query: 305 KFLQLQV----KVLSM 316
K L+LQ+ +++SM
Sbjct: 383 KTLKLQLQANFQIMSM 398
>gi|356518753|ref|XP_003528042.1| PREDICTED: uncharacterized protein LOC100803688 [Glycine max]
Length = 234
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 50/71 (70%), Gaps = 5/71 (7%)
Query: 245 AQQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
++PK+R VR + DP S+A R RRERI+E+++ LQ LVP K D ASMLDE I Y
Sbjct: 105 VRKPKRRNVRI----SDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAILY 160
Query: 304 VKFLQLQVKVL 314
VKFL+ Q+++L
Sbjct: 161 VKFLKRQIRLL 171
>gi|140084359|gb|ABO84933.1| Rhd6-like 4 [Physcomitrella patens]
Length = 67
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 257 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
G ATDP S+ R RRE+IAER++ LQ L+PN K D +MLDE + YV+FL+ QV +L
Sbjct: 1 GSATDPQSVHARARREKIAERLRKLQHLIPNGGKVDIVTMLDEAVHYVQFLKRQVTLL 58
>gi|223702410|gb|ACN21636.1| putative basic helix-loop-helix protein BHLH12 [Lotus japonicus]
Length = 247
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 246 QQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
++PK+R VR + DP S+A R RRERI+E+++ LQ LVP K D ASMLDE I YV
Sbjct: 90 RRPKRRNVRI----SDDPASVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYV 145
Query: 305 KFLQLQVKVL 314
KFL+ Q+++L
Sbjct: 146 KFLKRQIRLL 155
>gi|115459116|ref|NP_001053158.1| Os04g0489600 [Oryza sativa Japonica Group]
gi|113564729|dbj|BAF15072.1| Os04g0489600 [Oryza sativa Japonica Group]
gi|215695534|dbj|BAG90725.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195100|gb|EEC77527.1| hypothetical protein OsI_16412 [Oryza sativa Indica Group]
Length = 369
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER RR RI+E+++ LQ LVPN +K T + MLD +D++K LQ
Sbjct: 284 RVRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQS 343
Query: 310 QVKVL 314
Q++ L
Sbjct: 344 QLQTL 348
>gi|356522216|ref|XP_003529743.1| PREDICTED: transcription factor bHLH87-like [Glycine max]
Length = 431
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 44/56 (78%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+TDP ++A R RRERI+E+++ LQ+LVP +K D ASMLDE +Y+KFL+ QVK L
Sbjct: 339 STDPQTVAARHRRERISEKIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKAL 394
>gi|168029799|ref|XP_001767412.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681308|gb|EDQ67736.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 825
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 242 NTPAQQ---------PKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD 292
N+PA Q P + R R G ATDP SIA R RRE+ +R++ LQ LVPN + D
Sbjct: 656 NSPADQDFRSNFASPPAPKQRRRHGTATDPQSIAARTRREKFTDRIRILQSLVPNGERLD 715
Query: 293 KASMLDEIIDYVKFLQLQVKVL 314
ML + +YV+FLQ +V L
Sbjct: 716 TVHMLSQTFEYVRFLQHKVWDL 737
>gi|145334165|ref|NP_001078463.1| transcription factor bHLH127 [Arabidopsis thaliana]
gi|75296238|sp|Q7XHI7.1|BH127_ARATH RecName: Full=Transcription factor bHLH127; AltName: Full=Basic
helix-loop-helix protein 127; Short=AtbHLH127;
Short=bHLH 127; AltName: Full=bHLH transcription factor
bHLH127
gi|33111973|emb|CAE12173.1| putative bHLH127 transcription factor [Arabidopsis thaliana]
gi|332660148|gb|AEE85548.1| transcription factor bHLH127 [Arabidopsis thaliana]
Length = 307
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 46/57 (80%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQV 311
+R +A + H++AER RRE+I ERMK LQ+L+P NK+ K SML+++I+YVK L++Q+
Sbjct: 147 KRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSLEMQI 203
>gi|223702412|gb|ACN21637.1| putative basic helix-loop-helix protein BHLH13 [Lotus japonicus]
Length = 262
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 246 QQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
++PK++ VR + DP S+A R RRERI+E+++ LQ LVP K D ASMLDE I YV
Sbjct: 122 RKPKRKNVRI----SDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYV 177
Query: 305 KFLQLQVKVL 314
KFL+ Q+++L
Sbjct: 178 KFLKRQIRLL 187
>gi|42569994|ref|NP_182220.2| transcription factor PIL1 [Arabidopsis thaliana]
gi|75301051|sp|Q8L5W8.1|PIL1_ARATH RecName: Full=Transcription factor PIL1; AltName: Full=Basic
helix-loop-helix protein 124; Short=AtbHLH124;
Short=bHLH 124; AltName: Full=Protein PHYTOCHROME
INTERACTING FACTOR 3-LIKE 1; AltName: Full=Transcription
factor EN 110; AltName: Full=bHLH transcription factor
bHLH124
gi|22535492|dbj|BAC10689.1| PIF3 like basic Helix Loop Helix protein [Arabidopsis thaliana]
gi|61742691|gb|AAX55166.1| hypothetical protein At2g46970 [Arabidopsis thaliana]
gi|330255685|gb|AEC10779.1| transcription factor PIL1 [Arabidopsis thaliana]
Length = 416
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 48/62 (77%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R ++T+ H + ER RR+ ++M+ALQ+L+PN K DKAS+LDE I Y++ LQLQV+++
Sbjct: 226 KRKRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQMM 285
Query: 315 SM 316
SM
Sbjct: 286 SM 287
>gi|218186081|gb|EEC68508.1| hypothetical protein OsI_36777 [Oryza sativa Indica Group]
gi|222616287|gb|EEE52419.1| hypothetical protein OsJ_34535 [Oryza sativa Japonica Group]
Length = 258
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 253 RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 312
R + + D S+ + RRERI ER++ LQ+LVPN K D ++ML+E + YVKFLQLQ+K
Sbjct: 168 RGHKQCSKDTQSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIK 227
Query: 313 VLS 315
+LS
Sbjct: 228 LLS 230
>gi|28207148|gb|AAO37214.1| hypothetical protein [Arabidopsis thaliana]
Length = 416
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 48/62 (77%)
Query: 255 RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+R ++T+ H + ER RR+ ++M+ALQ+L+PN K DKAS+LDE I Y++ LQLQV+++
Sbjct: 226 KRKRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQMM 285
Query: 315 SM 316
SM
Sbjct: 286 SM 287
>gi|356526934|ref|XP_003532070.1| PREDICTED: transcription factor PIF5-like [Glycine max]
Length = 266
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 46/52 (88%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVK 305
ARR +A + H+++ER RR+RI E+MKALQ+L+P+++KTDKASML+E I+Y+K
Sbjct: 64 ARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLK 115
>gi|356507477|ref|XP_003522492.1| PREDICTED: uncharacterized protein LOC100779374 [Glycine max]
Length = 243
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
Query: 245 AQQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
++PK+R VR + DP S+A R RRERI+E+++ LQ LVP K D ASMLDE I Y
Sbjct: 114 VRKPKRRNVRI----SDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRY 169
Query: 304 VKFLQLQVKVL 314
VKFL+ Q++ L
Sbjct: 170 VKFLKRQIRFL 180
>gi|168030856|ref|XP_001767938.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680780|gb|EDQ67213.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 242 NTPAQQPKQRVRARRGQ---ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLD 298
N P+ + ++R +R + DP S+A R RRERI++R++ LQ VP K D ASMLD
Sbjct: 369 NVPSMEEIVQLRPKRRNVRISKDPQSVAARHRRERISDRVRVLQHFVPGGTKMDTASMLD 428
Query: 299 EIIDYVKFLQLQVKVLSMSRLG 320
E I YVKFLQ Q++ L R+G
Sbjct: 429 EAIHYVKFLQQQLQTL--ERIG 448
>gi|326507862|dbj|BAJ86674.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 405
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 44/56 (78%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
++DP ++A RLRRER+++R++ LQ+LVP +K D ASMLDE Y+KFL+ QV+ L
Sbjct: 282 SSDPQTVAARLRRERVSDRLRVLQKLVPGGSKMDTASMLDEAASYLKFLKSQVQAL 337
>gi|145360933|ref|NP_181843.2| transcription factor bHLH129 [Arabidopsis thaliana]
gi|218563526|sp|Q9ZW81.2|BH129_ARATH RecName: Full=Transcription factor bHLH129; AltName: Full=Basic
helix-loop-helix protein 129; Short=AtbHLH129;
Short=bHLH 129; AltName: Full=Transcription factor EN
73; AltName: Full=bHLH transcription factor bHLH129
gi|330255119|gb|AEC10213.1| transcription factor bHLH129 [Arabidopsis thaliana]
Length = 297
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 242 NTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
N P R RA+RG AT P SIAER RR RI+ ++K LQELVPN +K T A MLD
Sbjct: 223 NIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLA 282
Query: 301 IDYVKFLQLQVKV 313
++++K LQ QV+V
Sbjct: 283 VEHIKGLQHQVEV 295
>gi|255644916|gb|ACU22958.1| unknown [Glycine max]
Length = 242
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 40/54 (74%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
DP S+A R RRERI+ER+K LQ LVP K D ASMLDE I YVKFL+ QV+ L
Sbjct: 139 DPQSVAARHRRERISERIKILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTL 192
>gi|77552099|gb|ABA94896.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
Length = 246
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 253 RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 312
R + + D S+ + RRERI ER++ LQ+LVPN K D ++ML+E + YVKFLQLQ+K
Sbjct: 156 RGHKQCSKDTQSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIK 215
Query: 313 VLS 315
+LS
Sbjct: 216 LLS 218
>gi|224055255|ref|XP_002298446.1| predicted protein [Populus trichocarpa]
gi|222845704|gb|EEE83251.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
++RA+RG AT P SIAER+RR RI+ERM+ LQEL P+ +K T A LD I+ +K LQ
Sbjct: 335 KIRAKRGFATHPRSIAERVRRTRISERMRKLQELFPDMDKQTSTADKLDLSIELIKDLQK 394
Query: 310 QVKVLS 315
QVK L+
Sbjct: 395 QVKSLA 400
>gi|3763923|gb|AAC64303.1| hypothetical protein [Arabidopsis thaliana]
Length = 295
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 242 NTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
N P R RA+RG AT P SIAER RR RI+ ++K LQELVPN +K T A MLD
Sbjct: 221 NIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLA 280
Query: 301 IDYVKFLQLQVKV 313
++++K LQ QV+V
Sbjct: 281 VEHIKGLQHQVEV 293
>gi|413921524|gb|AFW61456.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 288
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA K R R R + DP S+A R RRERI+ER++ LQ LVP K D ASMLDE I Y
Sbjct: 146 PATVKKPRRRNVR-ISEDPQSVAARHRRERISERVRVLQRLVPGGTKMDTASMLDEAIRY 204
Query: 304 VKFLQLQVKVL 314
+KFL+ QV+ L
Sbjct: 205 IKFLKRQVQEL 215
>gi|413921523|gb|AFW61455.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 287
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA K R R R + DP S+A R RRERI+ER++ LQ LVP K D ASMLDE I Y
Sbjct: 145 PATVKKPRRRNVR-ISEDPQSVAARHRRERISERVRVLQRLVPGGTKMDTASMLDEAIRY 203
Query: 304 VKFLQLQVKVL 314
+KFL+ QV+ L
Sbjct: 204 IKFLKRQVQEL 214
>gi|222619693|gb|EEE55825.1| hypothetical protein OsJ_04431 [Oryza sativa Japonica Group]
Length = 171
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
R RA+RG AT P SIAER RR RI++R+K LQ+LVPN +K T+ + MLD + Y+K LQ
Sbjct: 92 RARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQG 151
Query: 310 QVKVL 314
QV+ L
Sbjct: 152 QVEKL 156
>gi|38345229|emb|CAE01659.2| OSJNBa0084K20.3 [Oryza sativa Japonica Group]
gi|38347437|emb|CAE02480.2| OSJNBa0076N16.1 [Oryza sativa Japonica Group]
gi|222629103|gb|EEE61235.1| hypothetical protein OsJ_15277 [Oryza sativa Japonica Group]
Length = 218
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
RVRA+RG AT P SIAER RR RI+E+++ LQ LVPN +K T + MLD +D++K LQ
Sbjct: 133 RVRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQS 192
Query: 310 QVKVL 314
Q++ L
Sbjct: 193 QLQTL 197
>gi|357465537|ref|XP_003603053.1| Transcription factor HEC2 [Medicago truncatula]
gi|355492101|gb|AES73304.1| Transcription factor HEC2 [Medicago truncatula]
Length = 271
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318
+ DP SIA R RRERI+E+++ LQ +VP K D ASMLDE I YVKFL+ Q+K L R
Sbjct: 178 SKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKSLQ-ER 236
Query: 319 LGGA 322
GA
Sbjct: 237 ASGA 240
>gi|356506557|ref|XP_003522046.1| PREDICTED: transcription factor UNE10-like [Glycine max]
Length = 397
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 47/57 (82%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 319
H +ER RR++I +RMK LQ+LVPN++KTDKASMLDE+I Y+K LQ QV++++ ++
Sbjct: 239 HKQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAQVQMMNWMKM 295
>gi|356554137|ref|XP_003545405.1| PREDICTED: transcription factor BEE 3-like [Glycine max]
Length = 305
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 5/101 (4%)
Query: 221 PVMNQTQAQASGSTGGGGGGGNTPAQQPKQR----VRARRGQATDPHSIAERLRRERIAE 276
P ++++ + S+G G N ++ K + VRAR GQATD ++AER+RR +I E
Sbjct: 118 PKVSESGNKFKHSSGRGKRVKNNVTEEEKAKEVVNVRARSGQATDSRNLAERVRRGKINE 177
Query: 277 RMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSM 316
+++ LQ +VP KT A MLDEII+YV+ LQ QV+ LS+
Sbjct: 178 KLRYLQNIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSL 218
>gi|334184893|ref|NP_001189738.1| transcription factor bHLH129 [Arabidopsis thaliana]
gi|330255120|gb|AEC10214.1| transcription factor bHLH129 [Arabidopsis thaliana]
Length = 309
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 242 NTPAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEI 300
N P R RA+RG AT P SIAER RR RI+ ++K LQELVPN +K T A MLD
Sbjct: 221 NIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLA 280
Query: 301 IDYVKFLQLQVKVL 314
++++K LQ QV+ L
Sbjct: 281 VEHIKGLQHQVESL 294
>gi|323388933|gb|ADX60271.1| bHLH transcription factor [Oryza sativa Japonica Group]
gi|323388951|gb|ADX60280.1| HLH transcription factor [Oryza sativa Japonica Group]
Length = 387
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
R RA+RG AT P SIAER RR RI++R+K LQ+LVPN +K T+ + MLD + Y+K LQ
Sbjct: 308 RARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQG 367
Query: 310 QVKVL 314
QV+ L
Sbjct: 368 QVEKL 372
>gi|115441653|ref|NP_001045106.1| Os01g0900800 [Oryza sativa Japonica Group]
gi|56784863|dbj|BAD82103.1| putative helix-loop-helix protein 1A [Oryza sativa Japonica Group]
gi|113534637|dbj|BAF07020.1| Os01g0900800 [Oryza sativa Japonica Group]
gi|215687014|dbj|BAG90828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189543|gb|EEC71970.1| hypothetical protein OsI_04807 [Oryza sativa Indica Group]
Length = 387
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
R RA+RG AT P SIAER RR RI++R+K LQ+LVPN +K T+ + MLD + Y+K LQ
Sbjct: 308 RARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQG 367
Query: 310 QVKVL 314
QV+ L
Sbjct: 368 QVEKL 372
>gi|414878955|tpg|DAA56086.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 227
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 244 PAQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
PA K R R R + DP S+A R RRERI+ER++ LQ LVP K D ASMLDE I Y
Sbjct: 146 PATVKKPRRRNVRI-SEDPQSVAARHRRERISERVRVLQRLVPGGTKMDTASMLDEAIRY 204
Query: 304 VKFLQLQVKVL 314
+KFL+ QV+ L
Sbjct: 205 IKFLKRQVQEL 215
>gi|357147361|ref|XP_003574317.1| PREDICTED: transcription factor UNE10-like isoform 1 [Brachypodium
distachyon]
Length = 460
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 55/71 (77%), Gaps = 4/71 (5%)
Query: 246 QQPKQRVRA----RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEII 301
++P R+R+ +R +A H+ +ER RR+RI ++M+ LQ+LVPN++KTDKASMLDE+I
Sbjct: 244 EEPPMRMRSSISTKRSRAAAIHNESERKRRDRINQKMQTLQKLVPNSSKTDKASMLDEVI 303
Query: 302 DYVKFLQLQVK 312
+++K LQ QV+
Sbjct: 304 EHLKQLQAQVQ 314
>gi|357147364|ref|XP_003574318.1| PREDICTED: transcription factor UNE10-like isoform 2 [Brachypodium
distachyon]
Length = 453
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 55/71 (77%), Gaps = 4/71 (5%)
Query: 246 QQPKQRVRA----RRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEII 301
++P R+R+ +R +A H+ +ER RR+RI ++M+ LQ+LVPN++KTDKASMLDE+I
Sbjct: 244 EEPPMRMRSSISTKRSRAAAIHNESERKRRDRINQKMQTLQKLVPNSSKTDKASMLDEVI 303
Query: 302 DYVKFLQLQVK 312
+++K LQ QV+
Sbjct: 304 EHLKQLQAQVQ 314
>gi|326523389|dbj|BAJ88735.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 419
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 238 GGGGNTPAQQP---KQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKA 294
G P +P K R R ++DP ++A RLRRE+++ER++ALQ LVP +K D A
Sbjct: 277 GASAGDPTHEPSPSKPRRRKNVRISSDPQTVAARLRREKVSERLRALQRLVPGGSKMDTA 336
Query: 295 SMLDEIIDYVKFLQLQ 310
SMLDE Y+KFL+ Q
Sbjct: 337 SMLDEAASYLKFLKSQ 352
>gi|20161601|dbj|BAB90521.1| B1065G12.3 [Oryza sativa Japonica Group]
Length = 234
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK-TDKASMLDEIIDYVKFLQL 309
R RA+RG AT P SIAER RR RI++R+K LQ+LVPN +K T+ + MLD + Y+K LQ
Sbjct: 155 RARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQG 214
Query: 310 QVKVL 314
QV+ L
Sbjct: 215 QVEKL 219
>gi|87241328|gb|ABD33186.1| Helix-loop-helix DNA-binding [Medicago truncatula]
Length = 689
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 59/82 (71%), Gaps = 10/82 (12%)
Query: 254 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKT-------DKASMLDEIIDYVKF 306
+++ ++T+ H+++ER RR+RI ERM+ALQEL+PN NK DKASMLDE I+Y+K
Sbjct: 425 SKKNRSTEVHNLSERRRRDRINERMRALQELIPNCNKVDLFFLQADKASMLDEAIEYLKS 484
Query: 307 LQLQVKVLSMSRLGGAAAVAPL 328
LQLQ++++SM GG P+
Sbjct: 485 LQLQLQIMSM---GGGGLYMPM 503
>gi|413950402|gb|AFW83051.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 430
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 246 QQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
++P++R VR ++DP ++A R RRERI+ER++ LQ+LVP K D ASMLDE Y+
Sbjct: 311 ERPRRRNVRI----SSDPQTVAARQRRERISERLRVLQKLVPGGAKMDTASMLDEAASYL 366
Query: 305 KFLQLQVKVL 314
+FLQ QV+ L
Sbjct: 367 RFLQSQVREL 376
>gi|55908877|gb|AAV67820.1| unknown protein [Oryza sativa Japonica Group]
Length = 416
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
++DP ++A RLRRER++ER++ LQ LVP +K D A+MLDE Y+KFL+ Q++ L
Sbjct: 304 SSDPQTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEAL 359
>gi|297724285|ref|NP_001174506.1| Os05g0541400 [Oryza sativa Japonica Group]
gi|255676533|dbj|BAH93234.1| Os05g0541400 [Oryza sativa Japonica Group]
Length = 414
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
++DP ++A RLRRER++ER++ LQ LVP +K D A+MLDE Y+KFL+ Q++ L
Sbjct: 302 SSDPQTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEAL 357
>gi|359489230|ref|XP_002275629.2| PREDICTED: transcription factor UNE10-like [Vitis vinifera]
Length = 465
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 44/50 (88%)
Query: 263 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 312
H+ +ER RR++I +RMK LQ+LVPN++KTDKASMLDE+I+Y+K LQ QV+
Sbjct: 287 HNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQ 336
>gi|218197191|gb|EEC79618.1| hypothetical protein OsI_20818 [Oryza sativa Indica Group]
Length = 344
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 259 ATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
++DP ++A RLRRER++ER++ LQ LVP +K D A+MLDE Y+KFL+ Q++ L
Sbjct: 232 SSDPQTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEAL 287
>gi|223702408|gb|ACN21635.1| putative basic helix-loop-helix protein BHLH11 [Lotus japonicus]
Length = 495
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 5/82 (6%)
Query: 245 AQQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 304
A++PK R ++DP ++A R RRERI++R++ LQ++VP +K D ASMLDE +Y+
Sbjct: 381 AEKPK---RKNVKISSDPQTVAARQRRERISDRIRVLQKIVPGGSKMDTASMLDEAANYL 437
Query: 305 KFLQLQVKVLSMSRLGGAAAVA 326
KFL+ QVK L LG + A
Sbjct: 438 KFLRSQVKAL--ESLGNKVSTA 457
>gi|224059166|ref|XP_002299748.1| predicted protein [Populus trichocarpa]
gi|222847006|gb|EEE84553.1| predicted protein [Populus trichocarpa]
Length = 304
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 5/71 (7%)
Query: 245 AQQPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 303
A++PK++ VR +TDP ++A R RRERI++R++ LQ +VP +K D ASMLDE +Y
Sbjct: 194 AEKPKRKNVRI----STDPQTVAARQRRERISDRIRVLQGMVPGGSKMDTASMLDEAANY 249
Query: 304 VKFLQLQVKVL 314
+KFL+ QVK L
Sbjct: 250 LKFLRSQVKAL 260
>gi|255552420|ref|XP_002517254.1| hypothetical protein RCOM_1461320 [Ricinus communis]
gi|223543625|gb|EEF45154.1| hypothetical protein RCOM_1461320 [Ricinus communis]
Length = 207
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Query: 247 QPKQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVK 305
+PK+R VR + DP S+A R RRERI+E+++ LQ LVP K D ASMLDE I YVK
Sbjct: 96 KPKRRNVRI----SDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVK 151
Query: 306 FLQLQVKVL 314
FL+ Q+++L
Sbjct: 152 FLKKQIRLL 160
>gi|414877869|tpg|DAA55000.1| TPA: putative clathrin heavy chain family protein [Zea mays]
Length = 898
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 41/54 (75%)
Query: 261 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVL 314
+P SI R RRERI ER+K LQ LVPN K D ++ML+E + YVKFLQLQ++++
Sbjct: 222 EPQSIYARKRRERINERLKVLQSLVPNGTKVDMSTMLEEAVHYVKFLQLQIRLI 275
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.309 0.125 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,855,987,355
Number of Sequences: 23463169
Number of extensions: 361015692
Number of successful extensions: 2284197
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2808
Number of HSP's successfully gapped in prelim test: 1952
Number of HSP's that attempted gapping in prelim test: 2251402
Number of HSP's gapped (non-prelim): 30345
length of query: 470
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 324
effective length of database: 8,933,572,693
effective search space: 2894477552532
effective search space used: 2894477552532
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 79 (35.0 bits)