Query 012160
Match_columns 470
No_of_seqs 280 out of 1100
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 23:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 7.7E-13 1.7E-17 100.5 5.0 52 260-311 5-59 (60)
2 smart00353 HLH helix loop heli 99.3 5E-12 1.1E-16 94.6 6.5 49 264-312 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 4E-12 8.7E-17 96.7 5.5 48 261-308 3-55 (55)
4 KOG1318 Helix loop helix trans 99.1 7.9E-11 1.7E-15 122.6 8.0 65 251-315 225-293 (411)
5 KOG1319 bHLHZip transcription 98.7 2.4E-08 5.2E-13 95.5 5.8 57 261-317 64-127 (229)
6 KOG4304 Transcriptional repres 98.6 1.3E-08 2.9E-13 100.3 2.8 53 260-312 33-93 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.4 2.7E-07 6E-12 103.1 5.6 51 260-310 21-75 (803)
8 KOG0561 bHLH transcription fac 98.1 3.2E-06 6.9E-11 85.9 6.2 54 263-316 64-119 (373)
9 KOG2588 Predicted DNA-binding 98.1 1.5E-06 3.2E-11 98.0 3.0 61 258-318 275-336 (953)
10 KOG2483 Upstream transcription 97.8 3.6E-05 7.8E-10 75.8 6.1 56 260-315 60-118 (232)
11 KOG3960 Myogenic helix-loop-he 97.7 6.2E-05 1.3E-09 75.1 6.1 56 263-318 122-179 (284)
12 KOG4029 Transcription factor H 97.6 6E-05 1.3E-09 72.7 3.8 58 261-318 111-172 (228)
13 PLN03217 transcription factor 96.9 0.0018 3.9E-08 55.7 5.7 48 271-318 19-72 (93)
14 KOG3910 Helix loop helix trans 96.6 0.0014 3.1E-08 70.6 3.0 59 257-315 524-586 (632)
15 KOG4447 Transcription factor T 95.0 0.012 2.6E-07 55.5 1.8 49 261-309 80-130 (173)
16 KOG3560 Aryl-hydrocarbon recep 92.6 0.13 2.7E-06 56.8 4.3 41 266-306 32-76 (712)
17 KOG3558 Hypoxia-inducible fact 91.5 0.12 2.6E-06 58.1 2.5 43 264-306 51-97 (768)
18 KOG3898 Transcription factor N 91.3 0.15 3.3E-06 51.0 2.9 50 260-309 73-125 (254)
19 KOG3559 Transcriptional regula 89.3 0.43 9.3E-06 51.4 4.3 44 265-308 7-54 (598)
20 PLN02705 beta-amylase 85.1 2.9 6.2E-05 47.2 7.7 12 261-272 86-97 (681)
21 KOG4395 Transcription factor A 84.5 1.4 3E-05 44.9 4.6 51 261-311 176-229 (285)
22 KOG3582 Mlx interactors and re 55.5 5.5 0.00012 45.6 1.2 57 260-316 652-713 (856)
23 KOG4447 Transcription factor T 47.1 13 0.00028 35.7 2.0 44 266-309 29-74 (173)
24 KOG3584 cAMP response element 42.2 23 0.00051 37.1 3.1 39 268-318 290-328 (348)
25 PLN02705 beta-amylase 40.2 20 0.00043 40.8 2.5 15 379-393 309-323 (681)
26 PF08232 Striatin: Striatin fa 27.8 2.9E+02 0.0062 25.4 7.5 45 271-320 27-71 (134)
27 PF15459 RRP14: 60S ribosome b 25.8 35 0.00075 28.0 1.0 15 38-52 6-20 (64)
28 PF02344 Myc-LZ: Myc leucine z 24.6 75 0.0016 23.2 2.4 17 267-283 13-29 (32)
29 TIGR00986 3a0801s05tom22 mitoc 24.0 48 0.001 31.4 1.7 38 271-308 48-85 (145)
30 KOG3582 Mlx interactors and re 22.8 23 0.00051 40.8 -0.6 58 258-318 786-848 (856)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.36 E-value=7.7e-13 Score=100.53 Aligned_cols=52 Identities=38% Similarity=0.647 Sum_probs=49.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcChhhHHHHHHHHHHHHHHHH
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQV 311 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~~---~K~DKASIL~eAI~YIK~LQ~qV 311 (470)
+..|+..||+||++||+.|..|+.+||.. .|++|++||+.||+||++|+.++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999998 79999999999999999999876
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.30 E-value=5e-12 Score=94.63 Aligned_cols=49 Identities=37% Similarity=0.577 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCC---CCCcChhhHHHHHHHHHHHHHHHHH
Q 012160 264 SIAERLRRERIAERMKALQELVPN---ANKTDKASMLDEIIDYVKFLQLQVK 312 (470)
Q Consensus 264 ~~aERrRRekINer~~aLRsLVP~---~~K~DKASIL~eAI~YIK~LQ~qVk 312 (470)
+..||+||++||+.|..|+.+||. ..|++|++||.+||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 5689999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.29 E-value=4e-12 Score=96.69 Aligned_cols=48 Identities=46% Similarity=0.710 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC-----CCcChhhHHHHHHHHHHHHH
Q 012160 261 DPHSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 308 (470)
Q Consensus 261 ~~H~~aERrRRekINer~~aLRsLVP~~-----~K~DKASIL~eAI~YIK~LQ 308 (470)
..|+..||+||++||+.|.+|+.+||.+ .|++|++||+.||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999999987 68999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.14 E-value=7.9e-11 Score=122.63 Aligned_cols=65 Identities=32% Similarity=0.516 Sum_probs=55.1
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCC----CCcChhhHHHHHHHHHHHHHHHHHHHh
Q 012160 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQLQVKVLS 315 (470)
Q Consensus 251 r~RaRr~~ak~~H~~aERrRRekINer~~aLRsLVP~~----~K~DKASIL~eAI~YIK~LQ~qVk~Le 315 (470)
+...|.+++|+.|+++|||||++||++|++|..|||.| .|..|..||..+++||++||+..++..
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~ 293 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAR 293 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 33444445578999999999999999999999999999 367799999999999999999766443
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.68 E-value=2.4e-08 Score=95.50 Aligned_cols=57 Identities=37% Similarity=0.542 Sum_probs=51.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCCC-------CcChhhHHHHHHHHHHHHHHHHHHHhcc
Q 012160 261 DPHSIAERLRRERIAERMKALQELVPNAN-------KTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 261 ~~H~~aERrRRekINer~~aLRsLVP~~~-------K~DKASIL~eAI~YIK~LQ~qVk~Le~~ 317 (470)
..|.-+||+||+-|+..+..|+.|||.|. |+.||.||.++|+||.+|++++..-+.+
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e 127 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEE 127 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999873 7889999999999999999988776654
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.64 E-value=1.3e-08 Score=100.35 Aligned_cols=53 Identities=28% Similarity=0.477 Sum_probs=47.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC--------CCcChhhHHHHHHHHHHHHHHHHH
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPNA--------NKTDKASMLDEIIDYVKFLQLQVK 312 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~~--------~K~DKASIL~eAI~YIK~LQ~qVk 312 (470)
+..|-++|||||.|||+.|.+|+.|||.+ .|++||.||+.||+|+|.|+....
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 46688999999999999999999999954 578999999999999999986543
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.40 E-value=2.7e-07 Score=103.07 Aligned_cols=51 Identities=27% Similarity=0.500 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC----CCcChhhHHHHHHHHHHHHHHH
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQLQ 310 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~~----~K~DKASIL~eAI~YIK~LQ~q 310 (470)
+.+|+.+|||||+++|..|.+|.+|||.+ .|+||.+||.+||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999999988 4999999999999999999885
No 8
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.15 E-value=3.2e-06 Score=85.87 Aligned_cols=54 Identities=28% Similarity=0.397 Sum_probs=48.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhcCCC--CCcChhhHHHHHHHHHHHHHHHHHHHhc
Q 012160 263 HSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQVKVLSM 316 (470)
Q Consensus 263 H~~aERrRRekINer~~aLRsLVP~~--~K~DKASIL~eAI~YIK~LQ~qVk~Le~ 316 (470)
-|..||||-+.||..|..||.|||.- .|+.||.||+.+.+||.+|+.+..+|-.
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~ 119 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLP 119 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccccc
Confidence 46789999999999999999999965 6999999999999999999987766643
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.10 E-value=1.5e-06 Score=98.04 Aligned_cols=61 Identities=30% Similarity=0.487 Sum_probs=55.5
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhhcCCC-CCcChhhHHHHHHHHHHHHHHHHHHHhccc
Q 012160 258 QATDPHSIAERLRRERIAERMKALQELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 258 ~ak~~H~~aERrRRekINer~~aLRsLVP~~-~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r 318 (470)
.+|.+||++|||.|..||++|.+|+.+||+. -|+.|..+|..||+||++|+...+.|+...
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~ 336 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN 336 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence 5689999999999999999999999999987 699999999999999999999777766443
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.79 E-value=3.6e-05 Score=75.81 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCCC--CcC-hhhHHHHHHHHHHHHHHHHHHHh
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPNAN--KTD-KASMLDEIIDYVKFLQLQVKVLS 315 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~~~--K~D-KASIL~eAI~YIK~LQ~qVk~Le 315 (470)
+..||..||+||..|+++|..|+.+||... +.. .++||.+|++||+.|+.+....+
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~ 118 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ 118 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence 467999999999999999999999999763 223 69999999999999998766554
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.70 E-value=6.2e-05 Score=75.09 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHHHHHHHH-HhhcCCC-CCcChhhHHHHHHHHHHHHHHHHHHHhccc
Q 012160 263 HSIAERLRRERIAERMKAL-QELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 263 H~~aERrRRekINer~~aL-RsLVP~~-~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r 318 (470)
-.+.||||=+|+||.|.+| |.-.++- ..+-|..||..||+||..||.-++++...+
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4578999999999999999 4555655 578999999999999999999999987654
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.56 E-value=6e-05 Score=72.74 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=50.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCC----CCCcChhhHHHHHHHHHHHHHHHHHHHhccc
Q 012160 261 DPHSIAERLRRERIAERMKALQELVPN----ANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 261 ~~H~~aERrRRekINer~~aLRsLVP~----~~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r 318 (470)
..++..||+|-+.+|..|.+||.+||. ..|+.|..+|..||+||++|++-++.-+...
T Consensus 111 ~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 111 QARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 456788999999999999999999985 4689999999999999999998777665443
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.94 E-value=0.0018 Score=55.71 Aligned_cols=48 Identities=27% Similarity=0.457 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhcCCC------CCcChhhHHHHHHHHHHHHHHHHHHHhccc
Q 012160 271 RERIAERMKALQELVPNA------NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 271 RekINer~~aLRsLVP~~------~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r 318 (470)
-+.|++.+..|+.|+|.. .|..-+-||+||..||+.|+.+|..|.+.-
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerL 72 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999964 456677799999999999999999998753
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.57 E-value=0.0014 Score=70.63 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=48.8
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCC----cChhhHHHHHHHHHHHHHHHHHHHh
Q 012160 257 GQATDPHSIAERLRRERIAERMKALQELVPNANK----TDKASMLDEIIDYVKFLQLQVKVLS 315 (470)
Q Consensus 257 ~~ak~~H~~aERrRRekINer~~aLRsLVP~~~K----~DKASIL~eAI~YIK~LQ~qVk~Le 315 (470)
+.++...|+.||.|-..|||.|++|.++.--.-| -.|.-||..||.-|-.|++||++--
T Consensus 524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 524 KERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 3455678889999999999999999998754433 3489999999999999999998743
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.04 E-value=0.012 Score=55.54 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=45.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcChhhHHHHHHHHHHHHHH
Q 012160 261 DPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQL 309 (470)
Q Consensus 261 ~~H~~aERrRRekINer~~aLRsLVP~~--~K~DKASIL~eAI~YIK~LQ~ 309 (470)
-.|++.||+|-..+|+.|..||.+||.. +|+.|.--|.-|..||.+|-.
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 4599999999999999999999999975 799999999999999999965
No 16
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=92.64 E-value=0.13 Score=56.81 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC----CCcChhhHHHHHHHHHHH
Q 012160 266 AERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKF 306 (470)
Q Consensus 266 aERrRRekINer~~aLRsLVP~~----~K~DKASIL~eAI~YIK~ 306 (470)
--||-|+|+|..++.|.+|+|-. .|+||.+||.-+|.|++.
T Consensus 32 PSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 32 PSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred cchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 35778999999999999999954 799999999999999874
No 17
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=91.45 E-value=0.12 Score=58.13 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCCC----CCcChhhHHHHHHHHHHH
Q 012160 264 SIAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKF 306 (470)
Q Consensus 264 ~~aERrRRekINer~~aLRsLVP~~----~K~DKASIL~eAI~YIK~ 306 (470)
.-+.|.||.|-|+.|.+|..+||-- ..+|||+|+.-||.|+|.
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 4477999999999999999999943 579999999999999974
No 18
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=91.34 E-value=0.15 Score=50.95 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=43.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcChhhHHHHHHHHHHHHHH
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQL 309 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~~---~K~DKASIL~eAI~YIK~LQ~ 309 (470)
+..-|..||+|--.+|+.|+.||++||.. .|+.|+..|.-+-.||..|++
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 34457789999999999999999999943 689999999999999988874
No 19
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=89.35 E-value=0.43 Score=51.39 Aligned_cols=44 Identities=34% Similarity=0.446 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC----CCcChhhHHHHHHHHHHHHH
Q 012160 265 IAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQ 308 (470)
Q Consensus 265 ~aERrRRekINer~~aLRsLVP~~----~K~DKASIL~eAI~YIK~LQ 308 (470)
-+.|.||++-|..|.+|.+++|-. ..+||++|+.-+..|||.-.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 356899999999999999999965 57999999999999998644
No 20
>PLN02705 beta-amylase
Probab=85.11 E-value=2.9 Score=47.19 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=7.9
Q ss_pred CcccHHHHHHHH
Q 012160 261 DPHSIAERLRRE 272 (470)
Q Consensus 261 ~~H~~aERrRRe 272 (470)
++....||+||-
T Consensus 86 e~~~~rer~rra 97 (681)
T PLN02705 86 ERTKLRERHRRA 97 (681)
T ss_pred hhhHHHHHHHHH
Confidence 344567888884
No 21
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=84.49 E-value=1.4 Score=44.93 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcChhhHHHHHHHHHHHHHHHH
Q 012160 261 DPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQV 311 (470)
Q Consensus 261 ~~H~~aERrRRekINer~~aLRsLVP~~---~K~DKASIL~eAI~YIK~LQ~qV 311 (470)
..-+..||+|-..+|..|+.||.+||.. .|+.|-..|+.+-.||-.|-...
T Consensus 176 ~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 176 LAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred cccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 3457899999999999999999999976 57888889999999999887554
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=55.51 E-value=5.5 Score=45.58 Aligned_cols=57 Identities=25% Similarity=0.287 Sum_probs=47.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC-----CCcChhhHHHHHHHHHHHHHHHHHHHhc
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQLQVKVLSM 316 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~~-----~K~DKASIL~eAI~YIK~LQ~qVk~Le~ 316 (470)
...|+-+|.+||+.|+-.|..|-+++... .|+.+..-+..+++||..++.+...+.+
T Consensus 652 ~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~ 713 (856)
T KOG3582|consen 652 PITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQE 713 (856)
T ss_pred cccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccch
Confidence 46799999999999999999999999765 4677777899999999988876655543
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=47.12 E-value=13 Score=35.70 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC--CCcChhhHHHHHHHHHHHHHH
Q 012160 266 AERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQL 309 (470)
Q Consensus 266 aERrRRekINer~~aLRsLVP~~--~K~DKASIL~eAI~YIK~LQ~ 309 (470)
.||.|..++++.+.-|+.|+|+. +++.+---|..+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 67889999999999999999976 344433336666666666654
No 24
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=42.25 E-value=23 Score=37.08 Aligned_cols=39 Identities=33% Similarity=0.485 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcChhhHHHHHHHHHHHHHHHHHHHhccc
Q 012160 268 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 268 RrRRekINer~~aLRsLVP~~~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r 318 (470)
|||--|+-..-.+-|+ |.+..| +|||+|+.+|.+||...
T Consensus 290 rKRevRLmKNREAARE----CRRKKK--------EYVKCLENRVAVLENQN 328 (348)
T KOG3584|consen 290 RKREVRLMKNREAARE----CRRKKK--------EYVKCLENRVAVLENQN 328 (348)
T ss_pred hHHHHHHHhhHHHHHH----HHHhHh--------HHHHHHHhHHHHHhccc
No 25
>PLN02705 beta-amylase
Probab=40.20 E-value=20 Score=40.82 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=9.3
Q ss_pred HHhhhhcccceEEee
Q 012160 379 SAMQYLQGKGLCLMP 393 (470)
Q Consensus 379 ~amq~LeskGLCLVP 393 (470)
.+.+..+..||.|.|
T Consensus 309 ~L~~mvr~~GLKlqv 323 (681)
T PLN02705 309 ELFNIIREFKLKLQV 323 (681)
T ss_pred HHHHHHHHcCCeEEE
Confidence 445566677777744
No 26
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=27.84 E-value=2.9e+02 Score=25.36 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcChhhHHHHHHHHHHHHHHHHHHHhccccC
Q 012160 271 RERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 320 (470)
Q Consensus 271 RekINer~~aLRsLVP~~~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r~~ 320 (470)
|..|..+|..|..=.= .--.+-.+-+.|||.|+..++....++..
T Consensus 27 RaEmkarIa~LEGE~r-----~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 27 RAEMKARIAFLEGERR-----GQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677777777765211 12234556689999999999988877644
No 27
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=25.77 E-value=35 Score=27.96 Aligned_cols=15 Identities=27% Similarity=0.720 Sum_probs=13.8
Q ss_pred CchhHHHHHHhCCCC
Q 012160 38 SQDDFLEQMLSSLPS 52 (470)
Q Consensus 38 ~~ddf~~qmls~lp~ 52 (470)
.|++|||.+|+-+|+
T Consensus 6 ~h~~~Fd~Ll~LIPA 20 (64)
T PF15459_consen 6 AHSSFFDGLLSLIPA 20 (64)
T ss_pred HHHHHHHHHHHhCCh
Confidence 589999999999987
No 28
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=24.56 E-value=75 Score=23.21 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012160 267 ERLRRERIAERMKALQE 283 (470)
Q Consensus 267 ERrRRekINer~~aLRs 283 (470)
-|+||+.++.++..||.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37889999999999985
No 29
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=23.99 E-value=48 Score=31.41 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcChhhHHHHHHHHHHHHH
Q 012160 271 RERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 308 (470)
Q Consensus 271 RekINer~~aLRsLVP~~~K~DKASIL~eAI~YIK~LQ 308 (470)
-|-|-+||.+|+.+||...+.--.++..-+..++|.+=
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~ 85 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKSTL 85 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999998766556666777777776553
No 30
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=22.83 E-value=23 Score=40.83 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=47.8
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhhcCCC-----CCcChhhHHHHHHHHHHHHHHHHHHHhccc
Q 012160 258 QATDPHSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 258 ~ak~~H~~aERrRRekINer~~aLRsLVP~~-----~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r 318 (470)
.....|.-.+||||-.+-++|..|-.|+|.. .++.+.+||. +.||.+|..-+.+.++-
T Consensus 786 ~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 786 MVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred eeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 3345688899999999999999999999954 4578999999 89999998887776643
Done!