Query 012160
Match_columns 470
No_of_seqs 280 out of 1100
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 03:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 7.2E-16 2.5E-20 126.6 3.6 59 260-318 7-66 (82)
2 4ati_A MITF, microphthalmia-as 99.6 3.1E-15 1.1E-19 130.6 7.5 68 250-317 18-89 (118)
3 1an4_A Protein (upstream stimu 99.5 3.9E-15 1.3E-19 116.6 3.1 54 258-311 4-63 (65)
4 4h10_B Circadian locomoter out 99.5 7.3E-15 2.5E-19 118.9 3.9 57 260-316 9-66 (71)
5 1a0a_A BHLH, protein (phosphat 99.5 4.3E-15 1.5E-19 117.1 2.0 54 259-312 2-62 (63)
6 4h10_A ARYL hydrocarbon recept 99.4 8.6E-15 2.9E-19 118.7 0.6 50 260-309 10-63 (73)
7 1hlo_A Protein (transcription 99.4 1.7E-13 5.8E-18 111.5 6.0 59 260-318 13-73 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 1.9E-13 6.6E-18 111.6 6.0 58 261-318 4-63 (83)
9 3u5v_A Protein MAX, transcript 99.4 3.7E-13 1.3E-17 109.8 5.3 58 260-317 6-67 (76)
10 1nkp_A C-MYC, MYC proto-oncoge 99.4 7.5E-13 2.6E-17 110.3 6.2 57 261-317 8-67 (88)
11 1nlw_A MAD protein, MAX dimeri 99.2 1.3E-11 4.4E-16 101.4 6.9 58 261-318 3-63 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.1 4E-11 1.4E-15 96.1 2.4 51 261-311 14-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 5.5E-10 1.9E-14 87.4 5.9 51 262-312 5-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 3.4E-10 1.2E-14 111.6 6.0 53 259-311 12-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 6.5E-10 2.2E-14 111.2 3.1 50 260-309 14-67 (387)
16 2lfh_A DNA-binding protein inh 98.6 1.1E-08 3.6E-13 82.5 2.4 45 265-309 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.5 1.2E-07 4.2E-12 78.9 6.2 47 271-317 4-54 (83)
18 4aya_A DNA-binding protein inh 98.1 4.6E-06 1.6E-10 71.3 6.6 49 267-315 33-84 (97)
19 3fx7_A Putative uncharacterize 56.7 18 0.0006 30.8 5.4 24 297-320 65-88 (94)
20 3muj_A Transcription factor CO 45.6 26 0.0009 31.6 5.0 35 273-307 95-133 (138)
21 2wt7_A Proto-oncogene protein 32.1 70 0.0024 24.5 4.9 17 301-317 22-38 (63)
22 1p3q_Q VPS9P, vacuolar protein 27.5 64 0.0022 24.7 3.9 25 265-289 3-27 (54)
23 1gmj_A ATPase inhibitor; coile 20.7 2E+02 0.0068 23.9 5.9 37 271-315 35-71 (84)
24 1a7t_A Metallo-beta-lactamase; 20.0 56 0.0019 29.1 2.7 31 282-312 200-230 (232)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.57 E-value=7.2e-16 Score=126.61 Aligned_cols=59 Identities=29% Similarity=0.493 Sum_probs=55.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC-CCcChhhHHHHHHHHHHHHHHHHHHHhccc
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~~-~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r 318 (470)
+..|+++||+||++||++|.+|+.|||++ .|+||++||.+||+||++||.+++.|+...
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~ 66 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999998 899999999999999999999999998764
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.57 E-value=3.1e-15 Score=130.61 Aligned_cols=68 Identities=32% Similarity=0.500 Sum_probs=51.8
Q ss_pred hhhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCC----CcChhhHHHHHHHHHHHHHHHHHHHhcc
Q 012160 250 QRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN----KTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 250 ~r~RaRr~~ak~~H~~aERrRRekINer~~aLRsLVP~~~----K~DKASIL~eAI~YIK~LQ~qVk~Le~~ 317 (470)
.+...++..++.+|+++||+||++||++|.+|+.|||.+. |++|++||++||+||++||.+++.|+..
T Consensus 18 ~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 18 ARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667899999999999999999999999999884 6889999999999999999999999864
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=3.9e-15 Score=116.59 Aligned_cols=54 Identities=24% Similarity=0.472 Sum_probs=50.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhhcCCCC------CcChhhHHHHHHHHHHHHHHHH
Q 012160 258 QATDPHSIAERLRRERIAERMKALQELVPNAN------KTDKASMLDEIIDYVKFLQLQV 311 (470)
Q Consensus 258 ~ak~~H~~aERrRRekINer~~aLRsLVP~~~------K~DKASIL~eAI~YIK~LQ~qV 311 (470)
.++..|+++||+||++||+.|.+|+.|||.+. |++|++||++||+||++||+++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999885 7899999999999999999865
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.50 E-value=7.3e-15 Score=118.87 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=52.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC-CCcChhhHHHHHHHHHHHHHHHHHHHhc
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLSM 316 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~~-~K~DKASIL~eAI~YIK~LQ~qVk~Le~ 316 (470)
+.+|+++||+||++||++|.+|++|||.. .|+||++||++||+||++||.++.=|+-
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 35799999999999999999999999975 6999999999999999999999887753
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.49 E-value=4.3e-15 Score=117.14 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=48.9
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCC-------CCcChhhHHHHHHHHHHHHHHHHH
Q 012160 259 ATDPHSIAERLRRERIAERMKALQELVPNA-------NKTDKASMLDEIIDYVKFLQLQVK 312 (470)
Q Consensus 259 ak~~H~~aERrRRekINer~~aLRsLVP~~-------~K~DKASIL~eAI~YIK~LQ~qVk 312 (470)
++.+|+++||+||++||+.|.+|++|||.+ .|++|++||+.||+||++||++|+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999999999999999965 466799999999999999998763
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=8.6e-15 Score=118.74 Aligned_cols=50 Identities=30% Similarity=0.453 Sum_probs=46.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC----CCcChhhHHHHHHHHHHHHHH
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQL 309 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~~----~K~DKASIL~eAI~YIK~LQ~ 309 (470)
+..|+.+||+||++||+.|.+|+.|||.| .|+||++||+.||+|||.|+.
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999977 699999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=1.7e-13 Score=111.53 Aligned_cols=59 Identities=24% Similarity=0.495 Sum_probs=55.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcChhhHHHHHHHHHHHHHHHHHHHhccc
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~~--~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r 318 (470)
+..|+..||+||.+||+.|..|+.+||.+ .|++|++||..||+||++|+.+++.|+...
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999986 699999999999999999999999998764
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.41 E-value=1.9e-13 Score=111.60 Aligned_cols=58 Identities=24% Similarity=0.505 Sum_probs=54.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcChhhHHHHHHHHHHHHHHHHHHHhccc
Q 012160 261 DPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 261 ~~H~~aERrRRekINer~~aLRsLVP~~--~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r 318 (470)
..|+..||+||.+||+.|..|+.+||.+ .|++|++||..||+||++|+.+++.|+...
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999975 799999999999999999999999988654
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.37 E-value=3.7e-13 Score=109.81 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=50.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCC---CCCc-ChhhHHHHHHHHHHHHHHHHHHHhcc
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVPN---ANKT-DKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP~---~~K~-DKASIL~eAI~YIK~LQ~qVk~Le~~ 317 (470)
+..|+..||+||++||+.|.+|+.+||. ..|. .|.+||..||+||++|++++++++.-
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~ 67 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN 67 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999995 3555 79999999999999999999998764
No 10
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.35 E-value=7.5e-13 Score=110.27 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=53.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcChhhHHHHHHHHHHHHHHHHHHHhcc
Q 012160 261 DPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 261 ~~H~~aERrRRekINer~~aLRsLVP~~---~K~DKASIL~eAI~YIK~LQ~qVk~Le~~ 317 (470)
..|++.||+||++||++|..|+.+||.+ .|++|++||.+||+||++|+.+.+.|...
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999975 59999999999999999999999887654
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.23 E-value=1.3e-11 Score=101.39 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=53.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcChhhHHHHHHHHHHHHHHHHHHHhccc
Q 012160 261 DPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (470)
Q Consensus 261 ~~H~~aERrRRekINer~~aLRsLVP~~---~K~DKASIL~eAI~YIK~LQ~qVk~Le~~r 318 (470)
..|+..||+||..||+.|..|+++||.+ .|++|++||.+|++||++|+++.+.|....
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999965 688999999999999999999999888654
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.06 E-value=4e-11 Score=96.08 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcChhhHHHHHHHHHHHHHHHH
Q 012160 261 DPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQV 311 (470)
Q Consensus 261 ~~H~~aERrRRekINer~~aLRsLVP~~--~K~DKASIL~eAI~YIK~LQ~qV 311 (470)
..|+..||+|+..||+.|..||.+||.. .|++|..||..||+||++|++.+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999965 68999999999999999999865
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.98 E-value=5.5e-10 Score=87.38 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhcCCC---CCcChhhHHHHHHHHHHHHHHHHH
Q 012160 262 PHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVK 312 (470)
Q Consensus 262 ~H~~aERrRRekINer~~aLRsLVP~~---~K~DKASIL~eAI~YIK~LQ~qVk 312 (470)
.|+..||+|+..||+.|..||.+||.. .|+.|..||..||+||++|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999965 589999999999999999998763
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.98 E-value=3.4e-10 Score=111.61 Aligned_cols=53 Identities=26% Similarity=0.443 Sum_probs=42.9
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcC-CCCCcChhhHHHHHHHHHHHHHHHH
Q 012160 259 ATDPHSIAERLRRERIAERMKALQELVP-NANKTDKASMLDEIIDYVKFLQLQV 311 (470)
Q Consensus 259 ak~~H~~aERrRRekINer~~aLRsLVP-~~~K~DKASIL~eAI~YIK~LQ~qV 311 (470)
++..|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+..-
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 3567999999999999999999999999 4579999999999999999998643
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.86 E-value=6.5e-10 Score=111.17 Aligned_cols=50 Identities=30% Similarity=0.439 Sum_probs=46.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcC----CCCCcChhhHHHHHHHHHHHHHH
Q 012160 260 TDPHSIAERLRRERIAERMKALQELVP----NANKTDKASMLDEIIDYVKFLQL 309 (470)
Q Consensus 260 k~~H~~aERrRRekINer~~aLRsLVP----~~~K~DKASIL~eAI~YIK~LQ~ 309 (470)
+.+|+.+||+||+|||+.|.+|+.||| ...|+||++||..||+|||.|+.
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 468999999999999999999999999 45799999999999999999874
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.62 E-value=1.1e-08 Score=82.51 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC---CCcChhhHHHHHHHHHHHHHH
Q 012160 265 IAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQL 309 (470)
Q Consensus 265 ~aERrRRekINer~~aLRsLVP~~---~K~DKASIL~eAI~YIK~LQ~ 309 (470)
..||+|+..||+.|..||.+||.. .|++|..||..||+||..||+
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 457889999999999999999965 689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.52 E-value=1.2e-07 Score=78.91 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhcCCC----CCcChhhHHHHHHHHHHHHHHHHHHHhcc
Q 012160 271 RERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 271 RekINer~~aLRsLVP~~----~K~DKASIL~eAI~YIK~LQ~qVk~Le~~ 317 (470)
|..||++|.+|..|||.+ .|.+|++||..+|+||++||+.++.+...
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999976 47899999999999999999988877654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.10 E-value=4.6e-06 Score=71.27 Aligned_cols=49 Identities=27% Similarity=0.362 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC---CCcChhhHHHHHHHHHHHHHHHHHHHh
Q 012160 267 ERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVKVLS 315 (470)
Q Consensus 267 ERrRRekINer~~aLRsLVP~~---~K~DKASIL~eAI~YIK~LQ~qVk~Le 315 (470)
||.|-..||+.|..||.+||.. .|+.|..+|..||+||++|++.+..-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5778889999999999999965 589999999999999999998876643
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=56.68 E-value=18 Score=30.76 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC
Q 012160 297 LDEIIDYVKFLQLQVKVLSMSRLG 320 (470)
Q Consensus 297 L~eAI~YIK~LQ~qVk~Le~~r~~ 320 (470)
.+.+=+||.+|.++|+.|+..++.
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~~~ 88 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDYLE 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHhHHHHHHHHHhHHHHHH
Confidence 457889999999999999988753
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=45.63 E-value=26 Score=31.57 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCCC----CCcChhhHHHHHHHHHHHH
Q 012160 273 RIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFL 307 (470)
Q Consensus 273 kINer~~aLRsLVP~~----~K~DKASIL~eAI~YIK~L 307 (470)
.|...|..|+++||.. .++-|-.||.+|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 5788999999999964 5788999999999998876
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.11 E-value=70 Score=24.46 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhcc
Q 012160 301 IDYVKFLQLQVKVLSMS 317 (470)
Q Consensus 301 I~YIK~LQ~qVk~Le~~ 317 (470)
.+||..|+.+|..|+..
T Consensus 22 k~~~~~Le~~v~~L~~~ 38 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDE 38 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 22
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=27.47 E-value=64 Score=24.75 Aligned_cols=25 Identities=12% Similarity=0.488 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC
Q 012160 265 IAERLRRERIAERMKALQELVPNAN 289 (470)
Q Consensus 265 ~aERrRRekINer~~aLRsLVP~~~ 289 (470)
.++|-+|...++-+.+|+.+.|..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4788899999999999999999554
No 23
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.73 E-value=2e+02 Score=23.94 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCcChhhHHHHHHHHHHHHHHHHHHHh
Q 012160 271 RERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLS 315 (470)
Q Consensus 271 RekINer~~aLRsLVP~~~K~DKASIL~eAI~YIK~LQ~qVk~Le 315 (470)
|++-.+.|..||.=+ ..=|+.=++-|+.|+++|..++
T Consensus 35 rqkekEqL~~LKkkl--------~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 35 RARAKEQLAALKKHK--------ENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888633 2234444555555555555544
No 24
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=20.05 E-value=56 Score=29.08 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=23.7
Q ss_pred HhhcCCCCCcChhhHHHHHHHHHHHHHHHHH
Q 012160 282 QELVPNANKTDKASMLDEIIDYVKFLQLQVK 312 (470)
Q Consensus 282 RsLVP~~~K~DKASIL~eAI~YIK~LQ~qVk 312 (470)
..++|+-...-....++.+++||+.++++++
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 4567766554455789999999999998875
Done!