Query 012161
Match_columns 469
No_of_seqs 49 out of 51
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 23:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09006 Surfac_D-trimer: Lung 58.8 17 0.00037 28.2 3.9 23 235-257 2-24 (46)
2 PRK10265 chaperone-modulator p 52.4 16 0.00035 31.7 3.3 23 235-257 74-96 (101)
3 PF12001 DUF3496: Domain of un 51.1 18 0.00038 32.7 3.4 24 103-126 5-36 (111)
4 PF06696 Strep_SA_rep: Strepto 35.7 48 0.001 22.8 2.8 18 110-127 3-20 (25)
5 PF14621 RFX5_DNA_bdg: RFX5 DN 29.1 32 0.0007 33.8 1.6 16 442-457 66-81 (219)
6 PF13591 MerR_2: MerR HTH fami 26.0 63 0.0014 27.0 2.7 21 233-253 64-84 (84)
7 PF12240 Angiomotin_C: Angiomo 24.6 1.1E+02 0.0025 30.4 4.5 35 98-132 136-170 (205)
8 PF05531 NPV_P10: Nucleopolyhe 23.4 1.6E+02 0.0034 25.1 4.5 31 231-261 3-33 (75)
9 COG5420 Uncharacterized conser 22.3 1.1E+02 0.0023 25.7 3.2 22 238-259 5-26 (71)
10 COG5509 Uncharacterized small 22.1 1.4E+02 0.0031 24.6 3.9 26 232-257 25-50 (65)
11 PF10224 DUF2205: Predicted co 21.5 1.4E+02 0.0029 25.6 3.8 30 235-264 19-48 (80)
12 COG4338 Uncharacterized protei 21.4 24 0.00053 27.9 -0.6 11 93-103 19-29 (54)
13 KOG4752 Ribosomal protein L41 20.1 47 0.001 22.7 0.6 13 152-164 5-17 (26)
No 1
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=58.79 E-value=17 Score=28.22 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhH
Q 012161 235 EQVLLKIETVHSRVHQLKSQLDI 257 (469)
Q Consensus 235 e~IL~kIE~lQsRV~~LK~rLdk 257 (469)
+.|=.||++||.||++|+..+++
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999886
No 2
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=52.45 E-value=16 Score=31.67 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhH
Q 012161 235 EQVLLKIETVHSRVHQLKSQLDI 257 (469)
Q Consensus 235 e~IL~kIE~lQsRV~~LK~rLdk 257 (469)
-++|.+|+.++.+++.|+.||..
T Consensus 74 l~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 74 LTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999975
No 3
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=51.14 E-value=18 Score=32.71 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHH--------HHHHHHhh
Q 012161 103 AELRINEIQSQALKYA--------RELAAYDQ 126 (469)
Q Consensus 103 lELRmKEl~SQa~KYd--------kELa~~~~ 126 (469)
+|||||+|+++.+|-- -||+.|++
T Consensus 5 mElrIkdLeselsk~Ktsq~d~~~~eLEkYkq 36 (111)
T PF12001_consen 5 MELRIKDLESELSKMKTSQEDSNKTELEKYKQ 36 (111)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHH
Confidence 7999999999988755 45555544
No 4
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=35.65 E-value=48 Score=22.76 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 012161 110 IQSQALKYARELAAYDQN 127 (469)
Q Consensus 110 l~SQa~KYdkELa~~~~~ 127 (469)
-+...++|+.||+.++++
T Consensus 3 Yqakla~YqaeLa~vqk~ 20 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKA 20 (25)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467789999999999875
No 5
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=29.11 E-value=32 Score=33.78 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=14.2
Q ss_pred ccccccccccCCCCCC
Q 012161 442 RNKRKRGERKAGPGSS 457 (469)
Q Consensus 442 ~nkrkrg~rka~sg~~ 457 (469)
--||||||-+..|||+
T Consensus 66 dAKRKRGRPRKKsggs 81 (219)
T PF14621_consen 66 DAKRKRGRPRKKSGGS 81 (219)
T ss_pred hhhhhcCCCccCCCCC
Confidence 4799999999999995
No 6
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=26.00 E-value=63 Score=27.04 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012161 233 SLEQVLLKIETVHSRVHQLKS 253 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~ 253 (469)
..-++|.+|+.+|.+++.||.
T Consensus 64 lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 64 LILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 344799999999999999973
No 7
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=24.60 E-value=1.1e+02 Score=30.39 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=32.4
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 012161 98 WRCKWAELRINEIQSQALKYARELAAYDQNKLSRV 132 (469)
Q Consensus 98 WRCkWlELRmKEl~SQa~KYdkELa~~~~~K~~~~ 132 (469)
-||+=+|-|||.|.+|++.=|-+|..+++..+.+.
T Consensus 136 ~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~~ 170 (205)
T PF12240_consen 136 RKCQEMENRIKALHAQIAEKDAMIKVLQQRSRKDP 170 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 47899999999999999999999999999998875
No 8
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=23.35 E-value=1.6e+02 Score=25.14 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhHHhhc
Q 012161 231 DSSLEQVLLKIETVHSRVHQLKSQLDIVMAK 261 (469)
Q Consensus 231 D~S~e~IL~kIE~lQsRV~~LK~rLdkv~sk 261 (469)
+..|..|+..|-++-.+|..|+.+++.+...
T Consensus 3 ~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~ 33 (75)
T PF05531_consen 3 QNILLVIRQDIKAVDDKVDALQTQVDDLESN 33 (75)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678888888888888898888888877665
No 9
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=22.32 E-value=1.1e+02 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHh
Q 012161 238 LLKIETVHSRVHQLKSQLDIVM 259 (469)
Q Consensus 238 L~kIE~lQsRV~~LK~rLdkv~ 259 (469)
.-.|+.+|..|++|+.|-.++.
T Consensus 5 ms~l~eiqkKvrkLqsrAg~ak 26 (71)
T COG5420 5 MSSLEEIQKKVRKLQSRAGQAK 26 (71)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777666543
No 10
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.12 E-value=1.4e+02 Score=24.64 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhH
Q 012161 232 SSLEQVLLKIETVHSRVHQLKSQLDI 257 (469)
Q Consensus 232 ~S~e~IL~kIE~lQsRV~~LK~rLdk 257 (469)
.|+.+|=+.|-.||+.+.+||..+.+
T Consensus 25 lsV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 25 LSVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47789999999999999999998765
No 11
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.49 E-value=1.4e+02 Score=25.65 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHhhcccC
Q 012161 235 EQVLLKIETVHSRVHQLKSQLDIVMAKNAS 264 (469)
Q Consensus 235 e~IL~kIE~lQsRV~~LK~rLdkv~skn~~ 264 (469)
+.|+.+|-+||.-..-|-+|++.|..+|..
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~k 48 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEK 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777777777766666444
No 12
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.42 E-value=24 Score=27.92 Aligned_cols=11 Identities=64% Similarity=1.419 Sum_probs=9.0
Q ss_pred ccCceeeehhh
Q 012161 93 IRPLMWRCKWA 103 (469)
Q Consensus 93 irPlmWRCkWl 103 (469)
-||..||-||-
T Consensus 19 qRPFsWRkKW~ 29 (54)
T COG4338 19 QRPFSWRKKWA 29 (54)
T ss_pred cCchHHHHHHH
Confidence 37899999985
No 13
>KOG4752 consensus Ribosomal protein L41 [Translation, ribosomal structure and biogenesis]
Probab=20.14 E-value=47 Score=22.66 Aligned_cols=13 Identities=69% Similarity=1.022 Sum_probs=9.2
Q ss_pred HhhhHHhhhhccc
Q 012161 152 YRKKAMKRRKRKR 164 (469)
Q Consensus 152 ~r~~~mkRRkRKR 164 (469)
.|.+.|.|-||||
T Consensus 5 wrkkrmrrlkrkr 17 (26)
T KOG4752|consen 5 WRKKRMRRLKRKR 17 (26)
T ss_pred HHHHHHHHHHHHH
Confidence 4667787777776
Done!