Query 012161
Match_columns 469
No_of_seqs 49 out of 51
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twe_A Alpha4H; unknown functi 57.8 13 0.00043 24.6 3.6 22 235-256 4-25 (27)
2 2wq1_A General control protein 44.6 25 0.00086 24.6 3.7 24 233-256 8-31 (33)
3 2oxj_A Hybrid alpha/beta pepti 40.3 32 0.0011 24.2 3.7 24 233-256 9-32 (34)
4 3c3f_A Alpha/beta peptide with 38.4 36 0.0012 24.0 3.7 24 233-256 9-32 (34)
5 3c3g_A Alpha/beta peptide with 36.9 39 0.0013 23.6 3.7 24 233-256 8-31 (33)
6 3m48_A General control protein 35.0 39 0.0013 23.7 3.4 24 233-256 8-31 (33)
7 1uo4_A General control protein 32.2 46 0.0016 23.4 3.4 24 233-256 9-32 (34)
8 1kd8_B GABH BLL, GCN4 acid bas 31.6 59 0.002 23.1 3.9 25 233-257 9-33 (36)
9 1kd8_A GABH AIV, GCN4 acid bas 28.3 64 0.0022 22.9 3.7 25 233-257 9-33 (36)
10 2bni_A General control protein 28.2 55 0.0019 23.0 3.3 25 232-256 8-32 (34)
11 2wuj_A Septum site-determining 26.0 67 0.0023 24.3 3.8 34 226-259 21-54 (57)
12 3p8c_D Wiskott-aldrich syndrom 21.8 1E+02 0.0035 30.6 5.1 34 231-264 49-82 (279)
13 1ez3_A Syntaxin-1A; three heli 21.4 1E+02 0.0035 25.5 4.4 34 229-262 2-35 (127)
14 2yy0_A C-MYC-binding protein; 21.4 1.1E+02 0.0039 22.9 4.2 30 232-261 19-48 (53)
15 2r2v_A GCN4 leucine zipper; co 21.0 1.2E+02 0.0039 21.4 3.8 24 233-256 9-32 (34)
No 1
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=57.83 E-value=13 Score=24.56 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHh
Q 012161 235 EQVLLKIETVHSRVHQLKSQLD 256 (469)
Q Consensus 235 e~IL~kIE~lQsRV~~LK~rLd 256 (469)
.++|-.+|.+|.|.++|+..|+
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4688889999999999987764
No 2
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.64 E-value=25 Score=24.59 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLD 256 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLd 256 (469)
-+|++|.++..++.+|.+||.-|.
T Consensus 8 KVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 8 KIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 468999999999999999998764
No 3
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=40.35 E-value=32 Score=24.22 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLD 256 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLd 256 (469)
-.|+||..=+.|+.+|.+||.-|.
T Consensus 9 kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh
Confidence 467899999999999999998874
No 4
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=38.43 E-value=36 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.276 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLD 256 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLd 256 (469)
-+|+||..-..|+.+|.+||.-|.
T Consensus 9 KVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 9 KLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh
Confidence 468899999999999999998774
No 5
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=36.93 E-value=39 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLD 256 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLd 256 (469)
-+|+||..=..|+.+|.+||.-|.
T Consensus 8 KvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 8 KLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 468899999999999999998774
No 6
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=34.97 E-value=39 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLD 256 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLd 256 (469)
-.|+||..-..|+..|.+||..|.
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 467899999999999999998875
No 7
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=32.20 E-value=46 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLD 256 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLd 256 (469)
-.|+||..-..|+..|.+||..|.
T Consensus 9 KVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 9 KGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHc
Confidence 467899999999999999998875
No 8
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.58 E-value=59 Score=23.12 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhH
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLDI 257 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLdk 257 (469)
-+|+||..-..|+.+|.+||.-|..
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4678999999999999999988764
No 9
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=28.35 E-value=64 Score=22.95 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhH
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLDI 257 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLdk 257 (469)
-+|+||..-..|+.+|.+||.-|..
T Consensus 9 kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 4688999999999999999987753
No 10
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=28.22 E-value=55 Score=23.05 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q 012161 232 SSLEQVLLKIETVHSRVHQLKSQLD 256 (469)
Q Consensus 232 ~S~e~IL~kIE~lQsRV~~LK~rLd 256 (469)
+-+|+||..=..|+.+|.+||.-|.
T Consensus 8 dKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 8 DKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3468899999999999999998774
No 11
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.99 E-value=67 Score=24.27 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=27.4
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHhHhHHh
Q 012161 226 ELKDDDSSLEQVLLKIETVHSRVHQLKSQLDIVM 259 (469)
Q Consensus 226 e~~d~D~S~e~IL~kIE~lQsRV~~LK~rLdkv~ 259 (469)
...+-|..|.+|...++.+..++..|+.+|...-
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688999999999999999999999987643
No 12
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=21.84 E-value=1e+02 Score=30.55 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhHHhhcccC
Q 012161 231 DSSLEQVLLKIETVHSRVHQLKSQLDIVMAKNAS 264 (469)
Q Consensus 231 D~S~e~IL~kIE~lQsRV~~LK~rLdkv~skn~~ 264 (469)
...|.+|...+..+.+|+..|+.||+.+..+-+.
T Consensus 49 ~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ 82 (279)
T 3p8c_D 49 EDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQ 82 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4467778888889999999999999998877443
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.41 E-value=1e+02 Score=25.53 Aligned_cols=34 Identities=15% Similarity=0.369 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhHhHHhhcc
Q 012161 229 DDDSSLEQVLLKIETVHSRVHQLKSQLDIVMAKN 262 (469)
Q Consensus 229 d~D~S~e~IL~kIE~lQsRV~~LK~rLdkv~skn 262 (469)
++|..++.+|.+|+.++.-+..|+..|..+...+
T Consensus 2 ~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~ 35 (127)
T 1ez3_A 2 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKH 35 (127)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999876663
No 14
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.41 E-value=1.1e+02 Score=22.89 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHhhc
Q 012161 232 SSLEQVLLKIETVHSRVHQLKSQLDIVMAK 261 (469)
Q Consensus 232 ~S~e~IL~kIE~lQsRV~~LK~rLdkv~sk 261 (469)
.-.+.|...++.||.+|..|+.++....++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888888888877665
No 15
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.04 E-value=1.2e+02 Score=21.42 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLD 256 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLd 256 (469)
-+|+++.+-..++.+|.+|+.-|.
T Consensus 9 KvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 9 KLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhc
Confidence 468899999999999999998774
Done!