Query 012161
Match_columns 469
No_of_seqs 49 out of 51
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 03:58:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012161.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012161hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ez3a_ a.47.2.1 (A:) Syntaxin 22.6 42 0.003 26.1 4.3 32 231-262 2-33 (124)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 22.3 34 0.0025 26.9 3.8 29 233-261 2-30 (133)
3 d1ydla1 d.295.1.1 (A:6-71) Gen 19.3 28 0.0021 25.7 2.4 33 231-263 8-60 (66)
4 d1uk5a_ a.7.7.1 (A:) BAG-famil 8.8 99 0.0072 24.6 2.9 22 237-258 28-49 (111)
5 d1hf8a1 a.7.8.2 (A:150-281) Cl 8.8 74 0.0054 25.9 2.2 21 231-251 9-29 (132)
6 d1hx8a1 a.7.8.2 (A:167-299) AP 8.6 78 0.0057 25.7 2.3 22 231-252 6-27 (133)
7 d1vf6a_ a.194.1.1 (A:) Associa 8.1 1.5E+02 0.011 21.2 3.4 22 237-258 35-56 (58)
8 d1wfda_ a.7.14.1 (A:) Hypothet 7.2 2.7E+02 0.02 20.5 4.8 30 233-262 57-86 (93)
9 d1yf2a2 d.287.1.2 (A:221-425) 6.7 2.2E+02 0.016 21.6 4.2 29 233-261 167-195 (205)
10 d1r6ta1 a.16.1.3 (A:7-60) N-te 6.4 2.2E+02 0.016 19.9 3.5 22 233-254 2-23 (54)
No 1
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.56 E-value=42 Score=26.15 Aligned_cols=32 Identities=13% Similarity=0.346 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhHHhhcc
Q 012161 231 DSSLEQVLLKIETVHSRVHQLKSQLDIVMAKN 262 (469)
Q Consensus 231 D~S~e~IL~kIE~lQsRV~~LK~rLdkv~skn 262 (469)
|..|+++|.+|+.++..+..|+.-|.++...+
T Consensus 2 d~~m~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~ 33 (124)
T d1ez3a_ 2 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKH 33 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999887664
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.31 E-value=34 Score=26.93 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHhhc
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLDIVMAK 261 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLdkv~sk 261 (469)
+|++|..+++.++.++..|+.+|..+...
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~ 30 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRAT 30 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999888875443
No 3
>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.25 E-value=28 Score=25.72 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHH--------------------HHHHHHHHhHhHHhhccc
Q 012161 231 DSSLEQVLLKIETVH--------------------SRVHQLKSQLDIVMAKNA 263 (469)
Q Consensus 231 D~S~e~IL~kIE~lQ--------------------sRV~~LK~rLdkv~skn~ 263 (469)
|.++.|+|+.|++-+ ..|..||.+|+..+.+|.
T Consensus 8 Dp~~Kq~il~ld~~~~~~~kFII~dLDdtHl~V~~~~~~~lk~~l~~l~d~ns 60 (66)
T d1ydla1 8 DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNA 60 (66)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCEEEECSSSEEEECTTHHHHHHHHHHHTSCCCT
T ss_pred CHHHHHHHHHhccCCccCCCEEEEEcCCceEEEcHHHHHHHHHHHHHHHHhcC
Confidence 899999999999875 689999999999998865
No 4
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.84 E-value=99 Score=24.57 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhHH
Q 012161 237 VLLKIETVHSRVHQLKSQLDIV 258 (469)
Q Consensus 237 IL~kIE~lQsRV~~LK~rLdkv 258 (469)
-+++|+.++.+|..|...+.+.
T Consensus 28 ~~~ki~~i~~~v~~L~~~V~~f 49 (111)
T d1uk5a_ 28 GVLKVEAILEKVQGLEQAVDSF 49 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 4567999999999888887764
No 5
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.81 E-value=74 Score=25.85 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 012161 231 DSSLEQVLLKIETVHSRVHQL 251 (469)
Q Consensus 231 D~S~e~IL~kIE~lQsRV~~L 251 (469)
++.+++||.+++.+|.++.+|
T Consensus 9 ~m~~~~LL~~l~~lQ~lld~L 29 (132)
T d1hf8a1 9 TMNTEKLLKTVPIIQNQMDAL 29 (132)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 567888999999999988776
No 6
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.60 E-value=78 Score=25.72 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 012161 231 DSSLEQVLLKIETVHSRVHQLK 252 (469)
Q Consensus 231 D~S~e~IL~kIE~lQsRV~~LK 252 (469)
++..++||.+++.+|.++.+|=
T Consensus 6 ~m~~~~LL~~l~~lQ~lld~Ll 27 (133)
T d1hx8a1 6 SMNAEKLLKTLPVLQAQLDALL 27 (133)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999998887763
No 7
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.14 E-value=1.5e+02 Score=21.20 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhHH
Q 012161 237 VLLKIETVHSRVHQLKSQLDIV 258 (469)
Q Consensus 237 IL~kIE~lQsRV~~LK~rLdkv 258 (469)
++-+|=.+|.-|+.||++|.-+
T Consensus 35 LF~qiL~lQ~SiqqLk~Qvn~~ 56 (58)
T d1vf6a_ 35 LFNQILTLQQSIKQLKGQLNHI 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6778999999999999998754
No 8
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.17 E-value=2.7e+02 Score=20.53 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHhhcc
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLDIVMAKN 262 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLdkv~skn 262 (469)
.-+.|-.+|..-..|+..||..|.+-..++
T Consensus 57 ~k~~l~~k~~eYl~RAE~LK~~l~~~~~~~ 86 (93)
T d1wfda_ 57 KRCVLRTKISGYMDRAENIKKYLDQEKEDG 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334677899999999999999998877664
No 9
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=6.67 E-value=2.2e+02 Score=21.59 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHhhc
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQLDIVMAK 261 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~rLdkv~sk 261 (469)
.+.+|...|+.+|.+...|+..-+.++.+
T Consensus 167 ~l~~id~~i~~~~~~~~~l~~~k~~Ll~~ 195 (205)
T d1yf2a2 167 ILSSVDKSIELKKQKKEKLQRMKKKIMEL 195 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777888888888776666665
No 10
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.41 E-value=2.2e+02 Score=19.91 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 012161 233 SLEQVLLKIETVHSRVHQLKSQ 254 (469)
Q Consensus 233 S~e~IL~kIE~lQsRV~~LK~r 254 (469)
|+.+|+.+|.+-=..|+.||..
T Consensus 2 S~~eL~~~I~~QGd~VR~LKa~ 23 (54)
T d1r6ta1 2 SLLELFNSIATQGELVRSLKAG 23 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHcc
Confidence 6778889998888889999874
Done!