BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012162
(469 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVL-----FITPRTCA 229
+ C +C+++L EP+T PC H+ C+ C ++++ + CP CR + + T R
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSL 73
Query: 230 VSVTLNSIIQKNFPEEYAERKSEHDS 255
V+V L +IIQK++P E R S +S
Sbjct: 74 VNVELWTIIQKHYPRECKLRASGQES 99
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-DRGNKCPLCRAVLF 222
++C +CL L E + TPCGH FC++C+ +S+ D G+KCP+ +L
Sbjct: 7 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 52
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-DRGNKCPLCRAVLF 222
G + P ++C +CL L E + TPCGH FC++C+ +S+ D G+KCP+ +L
Sbjct: 13 GYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 71
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-DRGNKCPLCRAVLF 222
G + P ++C +CL L E + TPCGH FC++C+ +S+ D G+KCP+ +L
Sbjct: 6 GYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-DRGNKCPLCRAVLF 222
G + P ++C +CL L E + TPCGH FC++C+ +S+ D G+KCP+ +L
Sbjct: 6 GYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG---NKCPLCRAVLFITPRTCAVSVTL 234
+C +CL+L+ EP++T C H FC+ C+ + +++ ++CPLC+ IT R+ S
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND--ITKRSLQESTRF 79
Query: 235 NSIIQK 240
+ ++++
Sbjct: 80 SQLVEE 85
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 6/49 (12%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQS-----MDRG-NKCPLCR 218
++ C +CL+LL +P++ CGHSFC++CL + +D+G + CP+CR
Sbjct: 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLF------QSMDRGNKCPLCR 218
++ C +CL+LL EP++ C HSFCR+C+ ++ D CP+CR
Sbjct: 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCL-------FQSMDRGNKCPLC 217
++ C +CL+LL EP++ CGHS CR+C+ SM + CP+C
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 131 MARDAILSGLQVDPFSNPLQASLQNLERTTASLI--GRRIHGTPERT-DDFDCTLCLKLL 187
M++ +G Q P S + SL L+RT I G I +P + C +CL +L
Sbjct: 7 MSQAVQTNGTQ--PLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDML 64
Query: 188 YEPITTP-CGHSFCRSCLFQSMDRGNK-CPLCRAVLFITPRTCAVSVTLNSIIQKNFP-- 243
+TT C H FC C+ ++ GNK CP CR L ++ R+ +++I K +P
Sbjct: 65 KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL-VSKRSLRPDPNFDALISKIYPSR 123
Query: 244 EEY 246
+EY
Sbjct: 124 DEY 126
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLN 235
++ C +C + E +T C HSFC C+ + M R +CP+CR + ++ S+ L+
Sbjct: 63 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI----KSKTYSLVLD 118
Query: 236 SIIQK---NFPEEYAERK 250
+ I K N E ER+
Sbjct: 119 NCINKMVNNLSSEVKERR 136
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLN 235
++ C +C + E +T C HSFC C+ + M R +CP+CR + ++ S+ L+
Sbjct: 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI----KSKTYSLVLD 107
Query: 236 SIIQK---NFPEEYAERK 250
+ I K N E ER+
Sbjct: 108 NCINKMVNNLSSEVKERR 125
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLN 235
++ C +C + E +T C HSFC C+ + M R +CP+CR + ++ S+ L+
Sbjct: 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI----KSKTYSLVLD 107
Query: 236 SIIQK---NFPEEYAERK 250
+ I K N E ER+
Sbjct: 108 NXINKMVNNLSSEVKERR 125
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCL---FQSMDRGNKCPLC 217
C++CL+ L EP+ CGH+FC++C+ ++ ++R CP+C
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN---KCPLCR 218
C +CL +L +P+T CGH+FC C+ Q + KCPLC+
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCK 64
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 130 DMARDAILSGLQVDPFSNPLQASLQNLERTTASLI--GRRIHGTPERT-DDFDCTLCLKL 186
M++ +G Q P S + SL L+RT I G I +P + C +CL +
Sbjct: 5 SMSQAVQTNGTQ--PLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDM 62
Query: 187 LYEPITTP-CGHSFCRSCLFQSMDRGNK-CPLCRAVLFITPRTCAVSVTLNSIIQKNFP 243
L +TT C H FC C+ ++ GNK CP CR L ++ R+ +++I K +P
Sbjct: 63 LKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL-VSKRSLRPDPNFDALISKIYP 120
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN---KCPLC 217
C +CL +L +P+T CGH+FC C+ Q + KCPLC
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLFITPRTCAVSVTLN 235
C +C +L +P+ T C H FCR C+ + + G+ CP CR F T V LN
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLN 82
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCR 218
F C C +L+Y+P+TT C H+ C+ CL +S + CP CR
Sbjct: 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACR 120
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 161 ASLIGRRIHGTP------ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-DRGNK 213
ASL R G+P + + F C C +L++ PITT C H+ C+ CL +S +
Sbjct: 30 ASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFS 89
Query: 214 CPLCRAVLFITPRTCAVSVT--LNSIIQKNFP 243
CP CR L R+ A+ V L +++ + FP
Sbjct: 90 CPACRYDL---GRSYAMQVNQPLQTVLNQLFP 118
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 179 DCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCR 218
+C +CL+ P++ PC H FC C+ + G +C LCR
Sbjct: 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCR 56
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 27/139 (19%)
Query: 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSA 80
V +L +KGN+A N ++A+ YS A + P + ++ NRS+AY + + K
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 81 S--EYRPLNGLDPTTHXXXXXXXXXXXXXXQSNSMKSHLLKANALILLERYDMARDAILS 138
+ +P G K + KA AL L R++ A+
Sbjct: 63 KTVDLKPDWG-------------------------KGYSRKAAALEFLNRFEEAKRTYEE 97
Query: 139 GLQVDPFSNPLQASLQNLE 157
GL+ + + L+ LQN+E
Sbjct: 98 GLKHEANNPQLKEGLQNME 116
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 191 ITTPCGHSFCRSCLFQSMDRGNKCPLCR 218
++T CGH FC CL S+ N CP CR
Sbjct: 28 VSTECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 191 ITTPCGHSFCRSCLFQSMDRGNKCPLCR 218
++T CGH FC CL S+ N CP CR
Sbjct: 93 VSTECGHVFCSQCLRDSLKNANTCPTCR 120
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 191 ITTPCGHSFCRSCLFQSMDRGNKCPLCR 218
++T CGH FC CL S+ N CP CR
Sbjct: 24 VSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 191 ITTPCGHSFCRSCLFQSMDRGNKCPLCR 218
++T CGH FC CL S+ N CP CR
Sbjct: 31 VSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82
C-Terminal Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1
C-Terminal Fragment
Length = 537
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 11 EGSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYI 67
+G P R + L +GN F NF EAI Y A + P +P+ N S+ YI
Sbjct: 14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI 70
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 11 EGSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYI 67
+G P R + L +GN F NF EAI Y A + P +P+ N S+ YI
Sbjct: 10 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI 66
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 191 ITTPCGHSFCRSCLFQSMDRGNKCPLCR 218
++T CGH FC CL S+ N CP CR
Sbjct: 36 VSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 180 CTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFIT 224
C++C L + T T C H+FC+SC+ + N+CP C V+ T
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR 68
+L + N F+ ++E AI YS+A + P + I GNRS AY+R
Sbjct: 23 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR 67
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 150 QASLQNLERTTASLI--GRRIHGTPERT-DDFDCTLCLKLLYEPITTP-CGHSFCRSCLF 205
+ SL L+RT I G I +P + C +CL +L +TT C H FC C+
Sbjct: 4 ELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCII 63
Query: 206 QSMDRGNK-CPLCRAVLF 222
++ GNK CP CR L
Sbjct: 64 TALRSGNKECPTCRKKLV 81
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR 68
+L + N F+ ++E AI YS+A + P + I GNRS AY+R
Sbjct: 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR 52
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCR 218
TD+ +C +C+ + I PC HSFC+ C+ + DR CP+CR
Sbjct: 13 TDEEECCICMDGRADLIL-PCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR 68
+L + N F+ ++E AI YS+A + P + I GNRS AY+R
Sbjct: 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR 59
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 87
KGN F++ ++ A+ +Y+ A P + I+ NR++ ++ +F R L+
Sbjct: 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQ----------RALD 68
Query: 88 GLDPTTHXXXXXXXXXXXXXXQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147
D S +K ++ KA L+ + + A+ A LQVDP +
Sbjct: 69 DCDTCIR-------------LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
Query: 148 PLQASLQNLER 158
+ ++N R
Sbjct: 116 EAREGVRNCLR 126
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 178 FDCTLCLKLLYEPITTP----CGHSFCRSC---LFQSMDRGNKCPLCRAVLFITPRTCAV 230
+C +C++ E P CGH+ CR C L S G +CP C + IT T
Sbjct: 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLT--- 72
Query: 231 SVTLNSIIQKNFP 243
+T N + K+ P
Sbjct: 73 QLTDNLTVLKSGP 85
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From
Aspergillus Fumigatus
Length = 164
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLK 74
L +GN A + +AI Y++A +I P +PI L NR++AY Q K
Sbjct: 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEK 63
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCR 218
D + C C +L P T CGH FC SC+ + + KC C+
Sbjct: 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQ 57
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 170 GTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNK-CPLCRAVLF---ITP 225
G+PE + F C + L+L+ +P+ G ++ RS + + +D G+K CP + L +TP
Sbjct: 1 GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLC 217
F C +C + P+ T C H FC SC + +C +C
Sbjct: 16 FRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 55
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 35.8 bits (81), Expect = 0.052, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 72
L +GN + NFE A+ Y +A + P + + NR++AY ++ +
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 35.4 bits (80), Expect = 0.065, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCL--FQSMDRGNKCPLCR 218
C +C + + PCGH C SCL +Q D G CP CR
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESD-GQGCPFCR 68
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 35.4 bits (80), Expect = 0.072, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 180 CTLCLKLLYEPITT---PCGHSFCRSCLFQSMDRGNKCPLCR 218
CT+CL +L E PC H F + C+ Q + KCP+CR
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 35.4 bits (80), Expect = 0.074, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 180 CTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLC 217
C LC + T C HSFC++C+ + ++ CP+C
Sbjct: 14 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein
1 Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 35.0 bits (79), Expect = 0.084, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 72
KGN F++ ++ +A+ +Y+ A P D + NR++ Y ++ +F
Sbjct: 22 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF 66
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 35.0 bits (79), Expect = 0.085, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 180 CTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLC 217
C LC + T C HSFC++C+ + ++ CP+C
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 35.0 bits (79), Expect = 0.088, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 180 CTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLC 217
C LC + T C HSFC++C+ + ++ CP+C
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 180 CTLCLKLLYEPITT----PCGHSFCRSCLFQSMDRGNKCPLC 217
C +CL+ ++ PCGH R+C + + G +CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCL--FQSMDRGNKCPLCRA 219
C +C + + PCGH C SCL +Q D G CP CR
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESD-GQGCPFCRC 381
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCR 218
C +C + + PCGH C SCL + G CP CR
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCR 218
C +C + + PCGH C SCL + G CP CR
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLK 74
+ L KGN+ FR +++AI Y+ A +K DP+ N S+ Y+ + K
Sbjct: 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKK 57
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRA 219
C +C + + PCGH C SCL + G CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 377
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRA 219
C +C + + PCGH C SCL + G CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 377
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRA 219
C +C + + PCGH C SCL + G CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 375
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRA 219
C +C + + PCGH C SCL + G CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 375
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 180 CTLCL---KLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLC 217
C +CL K E PC H+F R CL + ++ CPLC
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 194 PCGHSFCRSCLFQSMDRGNKCPLCRAVL 221
PC H F SC+ +++ + CP+CR L
Sbjct: 35 PCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 32.0 bits (71), Expect = 0.71, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 27 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLK 74
++GN F++ + EA+ Y + +P +P+ N++ A I++ ++ +
Sbjct: 9 EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQ 56
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 180 CTLCLKLLYEPITTPCGH-SFCRSCLFQSMDRGNKCPLCRAVLFITPRT 227
C +C+ + PCGH C+ C KCP+CR ++ T RT
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQEC----APSLRKCPICRGIIKGTVRT 342
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
Length = 127
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 29 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 72
GN A+++ +FE+A +Y +A + P + N+++ Y +F
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF 58
>pdb|3I4O|A Chain A, Crystal Structure Of Translation Initiation Factor 1 From
Mycobacterium Tuberculosis
pdb|3I4O|B Chain B, Crystal Structure Of Translation Initiation Factor 1 From
Mycobacterium Tuberculosis
Length = 79
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 306 IDPTTGSVADFACEVEITECEPLPDGRFVLEIES 339
IDP T + D A EVE EPLP+ F +E+E+
Sbjct: 2 IDPFTMAKKDGAIEVEGRVVEPLPNAMFRIELEN 35
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRA 219
C C P PC H+ C CL S G +CP+C+A
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQA 45
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 176 DDFDCTLCLKLLYEPITTPC-GHSFCRSCLFQSMDRGNK--CPLC 217
D+ C +C ++ + + PC G+S+C C+ ++ ++ CP C
Sbjct: 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 176 DDFDCTLCLKLLY---EPITTP-CGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223
D +C +CL L E P CGH F C+ + + CPLCR + +
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 173 ERTDDFDCTLCLKLLYEPITTPCGH-SFCRSCLFQSMDRGNKCPLCRAVLFITPRT 227
ERT C +C+ + PCGH C+ C KCP+CR+ + T RT
Sbjct: 24 ERT----CKVCMDKEVSIVFIPCGHLVVCKDC----APSLRKCPICRSTIKGTVRT 71
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 176 DDFDCTLCLKLLYEPITTPC-GHSFCRSCLFQSMDRGNK--CPLC 217
D+ C +C ++ + + PC G+S+C C+ ++ ++ CP C
Sbjct: 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 56
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ 71
+L ++GNR F + EA + Y RA P + NR+ Y+++ Q
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ 53
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed
With Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed
With Phosphorylated Smad1 Peptide
Length = 137
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ 71
+L ++GNR F + EA + Y RA P + NR+ Y+++ Q
Sbjct: 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ 58
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 195 CGHSFCRSCLFQSMDRGNKCPLCR 218
C HSF C+ + + N+CPLC+
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|4B7Y|C Chain C, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B7Y|D Chain D, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B86|C Chain C, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|D Chain D, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|G Chain G, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|H Chain H, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|K Chain K, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|L Chain L, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
Length = 116
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 172 PERTDDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLCR 218
P C +C LL +PI + C H C++C + M C C+
Sbjct: 36 PYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKTCKGKKMMMKPSCSWCK 85
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 173 ERTDDFDCTLCLKLLYEPITT----PCGHSFCRSCLFQSMDRGNKCPLC 217
E +C +CL+ ++ PCGH R+C + + G +CPLC
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 39 EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF-LKHRPPSASEYRPLNGLDPT 92
+EA+ Y+RA +I PG V+ N + +Y +SQ+ L + + Y + G PT
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277
>pdb|3KNV|A Chain A, Crystal Structure Of The Ring And First Zinc Finger
Domains Of Traf2
Length = 141
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 27/101 (26%)
Query: 160 TASLIGRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRA 219
+ +L+G ++ + C+ C +L P CGH +C CL + G
Sbjct: 20 SKTLLGTKLEA------KYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG-------- 65
Query: 220 VLFITPRTCAVSVTLN------SIIQKN--FPEEYAERKSE 252
P+ CA V SI++ + FP+ A R+ E
Sbjct: 66 -----PQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 39 EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF-LKHRPPSASEYRPLNGLDPT 92
+EA+ Y+RA +I PG V+ N + +Y +SQ+ L + + Y + G PT
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 180 CTLCLKLLYEPITTPCGHSF-CRSCLFQSMDRGNKCPLCRAVL 221
C +C+ + PCGH C+ C +++D KCP+C V+
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCA-EAVD---KCPMCYTVI 65
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 180 CTLCLKLLYEPITTPCGHSF-CRSCLFQSMDRGNKCPLCRAVL 221
C +C+ + PCGH C+ C +++D KCP+C V+
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCA-EAVD---KCPMCYTVI 65
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 180 CTLCLKLLYEPITTPCGHSF-CRSCLFQSMDRGNKCPLCRAVL 221
C +C+ + PCGH C+ C +++D KCP+C V+
Sbjct: 28 CKICMDRNIAIVFVPCGHLVTCKQCA-EAVD---KCPMCYTVI 66
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 194 PCGHSFCRSCLFQSMDRGNKCPLCRA 219
PC H+FC C+ + + + CPLC+
Sbjct: 23 PCLHAFCYVCITRWIRQNPTCPLCKV 48
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 180 CTLCLKLLYEPITTPCGHSF-CRSCLFQSMDRGNKCPLCRA 219
C +C + PCGH+ C SC Q CP+CR+
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRS 57
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 23/130 (17%)
Query: 29 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNG 88
GN +++ ++++AI Y +A + P + N +AY + + K + Y+
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQK----AIEYYQKALE 71
Query: 89 LDPTTHXXXXXXXXXXXXXXQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148
LDP N+ K+ + NA Y A + L++DP +
Sbjct: 72 LDP-------------------NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAK 112
Query: 149 LQASLQNLER 158
+ +L N ++
Sbjct: 113 AKQNLGNAKQ 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,971,189
Number of Sequences: 62578
Number of extensions: 513738
Number of successful extensions: 1153
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1085
Number of HSP's gapped (non-prelim): 96
length of query: 469
length of database: 14,973,337
effective HSP length: 102
effective length of query: 367
effective length of database: 8,590,381
effective search space: 3152669827
effective search space used: 3152669827
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)