BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012162
(469 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 143/479 (29%), Positives = 223/479 (46%), Gaps = 55/479 (11%)
Query: 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLK--HRPPSASE 82
L +GNR +RE E A+ Y+ A + P D ++ NRS Y + H A +
Sbjct: 246 LRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLYSNRSQIYFTLESHENALHDAEIACK 305
Query: 83 YRPLNGLDP------TTHAELALK-DAEKLLN---LQSNSMKSHLLKANALILLERYDMA 132
RP+ D ++ E A + D L++ ++ + + H+ E++D
Sbjct: 306 LRPMGFKDNLELPHCSSQEEAAARGDGSSLMDPAKVKGDGQQHHMKDQEEEE--EKWDAT 363
Query: 133 RDAILSG------------LQVDPFSN---PLQASLQNLERTTASLIGRRIHGTPERTDD 177
S Q++ + P +AS Q+ + D
Sbjct: 364 SPKAASSKTGKCQEKKRKHCQIESQEDTGMPNKASKQDPPTDQGDKPALSLPLASFDASD 423
Query: 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL--FITPRTCAVSVTLN 235
+C LC++L YEP+TTPCGH+FC CL + +D KCPLC+ L + R + +V +
Sbjct: 424 LECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIME 483
Query: 236 SIIQKNFPEEYAERKS----EHDSLINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYRLMV 291
+I K PEE ER+ E + L N ++ P+FV + P PLHIFEP YRLM+
Sbjct: 484 ELIAKFLPEELKERRKLYEEEMEELSNLNKNV-PIFVCTMAYPTVPCPLHIFEPCYRLMI 542
Query: 292 RRIME-GNHRMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLEIESRRRFRILRSWD 350
RR +E G + GM + DP G A++ C +EI + DGR V++ +RRFR+L
Sbjct: 543 RRCIETGTRQFGMCLGDPVKG-FAEYGCILEIRNVQFFADGRSVVDSIGKRRFRVLHQSQ 601
Query: 351 QDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLN 410
+DGY A+IE+++D +G ED A+L L N + A LW K S + ++LN
Sbjct: 602 RDGYNTADIEYIEDQKVQG-EDCAELMGLHNCVYQQASLWFHSLKSSLKN------RILN 654
Query: 411 VEVMMP-----PSQDPE--RFSFWLATLSDRRPSERLELLRIRDTRER---IRRGLIFL 459
MP P +P + +W+ + +L L +R ++R IRR L F+
Sbjct: 655 HFGPMPEKDADPQMNPNGPAWCWWMLAVLPLESRAQLPFLAMRSLKDRLNGIRRVLAFI 713
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 17/85 (20%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLC----RAVLFITPRTCA-- 229
D F C C L +P++ CGH+FC+ CL + +C LC A++ T R
Sbjct: 154 DGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGSR 213
Query: 230 -----------VSVTLNSIIQKNFP 243
V+V L+ ++ K FP
Sbjct: 214 RAGQQPPPPLRVNVVLSGLLGKLFP 238
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 178 bits (452), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 26/302 (8%)
Query: 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF--ITPRTCAVSV 232
D +C+LC++L YEP+TTPCGH+FC CL + +D KCPLC+ VL + R + +V
Sbjct: 456 ASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDVLLQCLPSRKYSKNV 515
Query: 233 TLNSIIQKNFPEEYAERK----SEHDSLINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYR 288
L +I PEE+ ERK E + L N ++ P+FV + P PLHIFEP YR
Sbjct: 516 ILEELIATFLPEEFKERKRLYEEEMEELSNLNKNV-PIFVCTMAYPTVPCPLHIFEPCYR 574
Query: 289 LMVRRIME-GNHRMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLEIESRRRFRILR 347
LM+RR +E G + GM + DP G V ++ C +EI + DGR V++ +RRF++L
Sbjct: 575 LMIRRCIETGTRQFGMCLGDPVKGFV-EYGCILEIRNVQFFSDGRSVVDSIGKRRFKVLH 633
Query: 348 SWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEK 407
+DGY A+IE+++D +G +D A+L L N E A W K S + +
Sbjct: 634 QGQRDGYNTADIEYIEDQKVQG-DDCAELMGLHNCVYEQASSWFHSLKASLKN------R 686
Query: 408 LLNVEVMMP-PSQDPE------RFSFWLATLSDRRPSERLELLRIRDTRER---IRRGLI 457
+LN MP +DP+ + +W + +L L +R ++R IRR L
Sbjct: 687 ILNHFGPMPEKDEDPQVNPNGPAWCWWTLAVLPLESRAQLPFLAMRSLKDRLNGIRRILA 746
Query: 458 FL 459
F+
Sbjct: 747 FI 748
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 171 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI------- 223
PE D F C C L +P++ CGH+FC+ CL + +C LC L
Sbjct: 150 APEVWDGFKCKKCHGFLSDPVSLWCGHTFCKLCLERGRAADRRCALCGVKLSALMAASGR 209
Query: 224 ----------TPRTCAVSVTLNSIIQKNFP 243
P V+V L+ ++ K FP
Sbjct: 210 ARGPRRAGQPAPLQLRVNVVLSGLLGKLFP 239
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 23/119 (19%)
Query: 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYR 84
L +GNR FRE E A+ Y+ A + P D ++ NRS Y +
Sbjct: 247 LRHEGNRLFREHQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESH------------ 294
Query: 85 PLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143
E AL DAE L+ K+H KA AL L + A L + +D
Sbjct: 295 -----------EDALHDAEIACKLRPMGFKAHFRKAQALATLGKVKEALKEFLYCVSLD 342
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 161/302 (53%), Gaps = 26/302 (8%)
Query: 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL--FITPRTCAVSV 232
D +C LC++L YEP+TTPCGH+FC CL + +D KCPLC+ L + R + +V
Sbjct: 462 ASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNV 521
Query: 233 TLNSIIQKNFPEEYAERKS----EHDSLINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYR 288
+ +I K PEE ER+ E + L N ++ P+FV + P PLHIFEP YR
Sbjct: 522 IMEELIAKFLPEELKERRKLYEEEMEELSNLNKNV-PIFVCTMAYPTVPCPLHIFEPCYR 580
Query: 289 LMVRRIME-GNHRMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLEIESRRRFRILR 347
LM+RR +E G + GM + DP G A++ C +EI + DGR V++ +RRFR+L
Sbjct: 581 LMIRRCIETGTRQFGMCLGDPVKG-FAEYGCILEIRNVQFFADGRSVVDSIGKRRFRVLH 639
Query: 348 SWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEK 407
+DGY A+IE+++D +G ED A+L L N + A LW K S + +
Sbjct: 640 QSQRDGYNTADIEYIEDQKVQG-EDCAELMGLHNCVYQQASLWFHSLKLSLKN------R 692
Query: 408 LLNVEVMMP-----PSQDPE--RFSFWLATLSDRRPSERLELLRIRDTRER---IRRGLI 457
+LN MP P +P + +W+ + +L L +R ++R IRR L
Sbjct: 693 ILNHFGPMPEKDADPQMNPNGPAWCWWMLAVLPLESRAQLPFLAMRSLKDRLNGIRRVLA 752
Query: 458 FL 459
F+
Sbjct: 753 FI 754
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 23/119 (19%)
Query: 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYR 84
L +GNR +RE E A+ Y+ A + P D ++ NRS Y +
Sbjct: 246 LRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLYSNRSQIYFTLESH------------ 293
Query: 85 PLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143
E AL DAE L+ K+H KA AL L + + A L + +D
Sbjct: 294 -----------ENALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLD 341
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 17/85 (20%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLC----RAVLFIT------- 224
D F C C L +P++ CGH+FC+ CL + +C LC A++ T
Sbjct: 154 DGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGAR 213
Query: 225 ------PRTCAVSVTLNSIIQKNFP 243
P V+V L+ ++ K FP
Sbjct: 214 RAGQQPPPPLRVNVVLSGLLGKLFP 238
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 162/287 (56%), Gaps = 8/287 (2%)
Query: 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL--FITPRTCAVSV 232
DF+C+LC++L +EP+TTPCGHSFC++CL + +D CPLC+ L ++ R V+
Sbjct: 474 VSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKESLKEYLADRRYCVTQ 533
Query: 233 TLNSIIQKNFPEEYAERKSEHD---SLINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYRL 289
L +I K P+E +ERK +D + ++ +P+FV + P PLH+FEPRYRL
Sbjct: 534 LLEELIVKYLPDELSERKKIYDEETAELSHLTKNVPIFVCTMAYPTVPCPLHVFEPRYRL 593
Query: 290 MVRR-IMEGNHRMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLEIESRRRFRILRS 348
M+RR I G + GM + D T S AD+ C ++I LPDGR V++ +RFR+L+
Sbjct: 594 MIRRSIQTGTKQFGMCVSD-TQNSFADYGCMLQIRNVHFLPDGRSVVDTVGGKRFRVLKR 652
Query: 349 WDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESAR-QDRRRLEK 407
+DGY A+IE+++D+ E ++ +L++L + A W + ++ R Q +
Sbjct: 653 GMKDGYCTADIEYLEDVKVENEDEIKNLRELHDLVYSQACSWFQNLRDRFRSQILQHFGS 712
Query: 408 LLNVEVMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRR 454
+ E + + + + +WL + P +L +L ++ +ER+ +
Sbjct: 713 MPEREENLQAAPNGPAWCWWLLAVLPVDPRYQLSVLSMKSLKERLTK 759
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 163/301 (54%), Gaps = 28/301 (9%)
Query: 177 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL--FITPRTCAVSVTL 234
DF+C LC++LL+EP+TTPCGH+FC CL + +D CPLC+ L + R ++V
Sbjct: 446 DFECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLSELLASRNFNITVLA 505
Query: 235 NSIIQKNFPEEYAERKSEHDS----LINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYRLM 290
+I + P+E ++RK +D L N D+ P+FV + P PLH+FEPRYRLM
Sbjct: 506 EELIFRYLPDELSDRKRIYDEEMSELSNLTRDV-PIFVCAMAFPTVPCPLHVFEPRYRLM 564
Query: 291 VRRIME-GNHRMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLEIESRRRFRILRSW 349
+RR ME G R GM + G ++++ C +EI + PDG V++ RFR+L
Sbjct: 565 IRRCMETGTKRFGMCLSAEHAG-LSEYGCMLEIKDVRTFPDGSSVVDAIGISRFRVLSHR 623
Query: 350 DQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLL 409
+DGY A+IE+++D EG E +L L ++ + + W ++ QDR + + L
Sbjct: 624 HRDGYNTADIEYLEDEKVEGPE-YEELAALHDSVHQQSVSWF-----ASLQDRMKEQILS 677
Query: 410 NVEVMMPPSQDPE--------RFSFWLATLSDRRPSERLELLRIRDTRER---IRRGLIF 458
+ VM P ++PE +S+W+ + +L +L + +ER IRR L+
Sbjct: 678 HFGVM--PDREPEPQSNPSGPAWSWWILAVLPLERKAQLAILGMTSLKERLLAIRRILVI 735
Query: 459 L 459
+
Sbjct: 736 I 736
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLN 235
D C C +LL++P+T PCG + C+ C+ R P+ V+V L+
Sbjct: 139 DLLGCPRCRRLLHKPVTLPCGLTVCKRCVEPGPAR--------------PQVRRVNVVLS 184
Query: 236 SIIQKNFPEE 245
+++K FP E
Sbjct: 185 GLLEKCFPAE 194
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 29/193 (15%)
Query: 177 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTC----AVSV 232
+ +C +C +LY+P+ +PCGH+FC CL Q++ + +CP CR F P A S
Sbjct: 166 ELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCR---FGLPSPVVLEHAKSH 222
Query: 233 TLNSIIQKNFPEEYAERKSEHDSLINFGVDLMPLFVMDVVIPCQRFP--LHIFEPRYRLM 290
++ + ++ +P+ + ER+ + +PLF+ + P R P LHIFE RY +M
Sbjct: 223 SITTFLRDFYPDNWLERQKSWEEEKE-QESWLPLFISMLAYP--RMPTFLHIFELRYHIM 279
Query: 291 VRRIMEGNHR--MGMVIIDPTTGS---------------VADFACEVEITECEPLPDGRF 333
+++ +E + R + M + + G +++ +EI + EPL DGR
Sbjct: 280 IKKCLETSKRFCIAMPLRARSDGHNEHRELRNARGQRLFCSEYGTILEIIQVEPLIDGRS 339
Query: 334 VLEIESRRRFRIL 346
++E RI+
Sbjct: 340 LVEARGSYCVRII 352
>sp|Q03605|YNN1_CAEEL Uncharacterized RING finger protein T02C1.1 OS=Caenorhabditis
elegans GN=T02C1.1 PE=4 SV=1
Length = 160
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 174 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAV-SV 232
R +DF C +CL EP CGHS+CR C+ ++ KCPLCRA R + S+
Sbjct: 2 RDEDFCCAVCLDFFVEPCIIECGHSYCRFCIESHLNINEKCPLCRAHTGNPIRNRQLESL 61
Query: 233 TLNSIIQKNFPEEYAER 249
T++ + +N EY ER
Sbjct: 62 TMSYVSSRNISTEYYER 78
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 161 ASLIGRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAV 220
A L I+ ++++DF C +C ++ E T CGHSFC C+ QS++ N+CP C V
Sbjct: 117 APLCNGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYV 176
Query: 221 L 221
+
Sbjct: 177 V 177
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVL-----FITPRTCAVSVT 233
C +C+++L EP+T PC H+ C+ C ++++ + CP CR + + T R V+V
Sbjct: 16 CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVE 75
Query: 234 LNSIIQKNFPEEYAERKSEHDS 255
L +IIQK++P E R S +S
Sbjct: 76 LWTIIQKHYPRECKLRASGQES 97
>sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125 OS=Mus musculus GN=Rnf125 PE=2
SV=3
Length = 233
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNK--CPLCRAVL 221
FDC++CL++L++P+ T CGH FCRSC+ S+ NK CP CRA L
Sbjct: 35 FDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTCPYCRAYL 80
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 168 IHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221
++ ++++DF C +C ++ E T CGHSFC C+ QS++ N+CP C V+
Sbjct: 126 LNSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVV 179
>sp|Q96EQ8|RN125_HUMAN E3 ubiquitin-protein ligase RNF125 OS=Homo sapiens GN=RNF125 PE=1
SV=4
Length = 232
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 12/78 (15%)
Query: 146 SNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLF 205
S P A+ + LER RR P FDC +CL++L++P+ T CGH FCRSC+
Sbjct: 12 SAPASATARALER-------RRDPELP--VTSFDCAVCLEVLHQPVRTRCGHVFCRSCIA 62
Query: 206 QSMDRGNK--CPLCRAVL 221
S+ + NK CP CRA L
Sbjct: 63 TSL-KNNKWTCPYCRAYL 79
>sp|Q14258|TRI25_HUMAN E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens GN=TRIM25 PE=1
SV=2
Length = 630
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 30/205 (14%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNK--CPLCRAVLFITPRTCAVSV 232
++ C++CL+ EP+TTPCGH+FC SCL ++ +G+ CP CRAV P+ +V
Sbjct: 9 EELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRAVYQARPQLHKNTV 68
Query: 233 TLNSIIQ--------------------KNFPEEYAERKSEH---DSLINFGVDLMPLFVM 269
N + Q + P A+ +H ++ + + M F
Sbjct: 69 LCNVVEQFLQADLAREPPADVWTPPARASAPSPNAQVACDHCLKEAAVKTCLVCMASFCQ 128
Query: 270 DVVIP---CQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDPTTGSVADFACEVEITECE 326
+ + P F H +P R ++RR ++R+ P C VE C
Sbjct: 129 EHLQPHFDSPAFQDHPLQPPVRDLLRRKCSQHNRLREFFC-PEHSECICHICLVEHKTCS 187
Query: 327 PLPDGRFVLEIESRRRFRILRSWDQ 351
P + ++E+ R ++ + Q
Sbjct: 188 PASLSQASADLEATLRHKLTVMYSQ 212
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNK-CPLCRAVL-----FITPRTCAVSVT 233
C +C+++L+EP+T PC H+ C+ C ++++ + CP CR + + + V++
Sbjct: 16 CQICVEILFEPVTLPCNHTLCKPCFESTVEKASLCCPFCRRRVSSWARYRSRTNSLVNME 75
Query: 234 LNSIIQKNFPEEYAERKSEHDS 255
L IIQK++P+E R S +S
Sbjct: 76 LWEIIQKHYPKECKLRASGQES 97
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 177 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNK-CPLCRAVLFITPRTCAVSVTLN 235
D C +CL++ EP+T PC H+FC+ C +++D+ N CPLCR + R + + TL
Sbjct: 23 DCVCPVCLEIFLEPVTLPCMHTFCKPCFLETVDKSNMCCPLCRKRVSTWARLNSRNKTLV 82
Query: 236 SI-----IQKNFPEEYAER 249
++ IQ FP + R
Sbjct: 83 NMELWRRIQDAFPSQCERR 101
>sp|Q95KF1|RN125_MACFA E3 ubiquitin-protein ligase RNF125 OS=Macaca fascicularis GN=RNF125
PE=2 SV=3
Length = 232
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 14/79 (17%)
Query: 146 SNPLQASLQNLERTTASLIGRRIHGTPER-TDDFDCTLCLKLLYEPITTPCGHSFCRSCL 204
S P A+ + LER G PE FDC +CL++L++P+ T CGH FCRSC+
Sbjct: 12 SAPPSATPRALER----------RGDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCI 61
Query: 205 FQSMDRGNK--CPLCRAVL 221
S+ + NK CP CRA L
Sbjct: 62 ATSL-KNNKWTCPYCRAYL 79
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQS-MDRG--NKCPLCRAVLFITPR 226
++ C++CL+L EP+TTPCGH+FC SCL ++ + +G +CP CR V + P+
Sbjct: 9 EELSCSVCLELFKEPVTTPCGHNFCMSCLDETWVVQGPPYRCPQCRKVYQVRPQ 62
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 168 IHGTPERTDDFD----CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL-- 221
+H + + D D C +C L + TPCGHSFC C+ + + + +KCPLC + L
Sbjct: 16 LHTSVPQLTDLDSLLRCHICKDFLKASVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTE 75
Query: 222 ------FITPRTCAVSVTLNSIIQKNFPEEYAERKSEHDSLINFGVD 262
F+ C+ V L +QK+ E + +++ +I+ D
Sbjct: 76 SMLQKEFLVQEICSSYVKLRGSLQKHLTISSQEEEKDNEIIISDEAD 122
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVL-----FITPRTCAVSVT 233
C +C+++L EP+T PC H+ C C ++++ N CP CR + + T R V+
Sbjct: 16 CGICMEILVEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 75
Query: 234 LNSIIQKNFPEEYAERKSEHDS 255
L IIQK++ +E R S +S
Sbjct: 76 LWEIIQKHYAKECKLRISGQES 97
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVL-----FITPRTCAVSVT 233
C +C+++L EP+T PC H+ C C ++++ N CP CR + + T R V+
Sbjct: 16 CGICMEILLEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 75
Query: 234 LNSIIQKNFPEEYAERKSEHDS 255
L IIQK++ +E R S +S
Sbjct: 76 LWEIIQKHYAKECKLRISGQES 97
>sp|Q6AZZ1|TRI68_HUMAN E3 ubiquitin-protein ligase TRIM68 OS=Homo sapiens GN=TRIM68 PE=1
SV=1
Length = 485
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLF-------QSMDRGNKCPLCRAVLFITPRT 227
++ C +C+ L EP++ CGHSFC SCL +S + G CPLCRA + PR
Sbjct: 11 VEEVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGESQNWGYTCPLCRAP--VQPRN 68
Query: 228 CAVSVTLNSIIQK 240
+ L ++++K
Sbjct: 69 LRPNWQLANVVEK 81
>sp|Q3ZBZ8|STIP1_BOVIN Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1
Length = 543
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSA 80
V +L +KGN+A N ++A+ YS A + P + ++ NRS+AY + + K
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQK------ 56
Query: 81 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 140
A +D K ++L+ + K + KA AL L R++ A+ GL
Sbjct: 57 -----------------AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKQTYEEGL 99
Query: 141 QVDPFSNPLQASLQNLE 157
+ + + L+ LQN+E
Sbjct: 100 KHEANNPQLKEGLQNME 116
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 28/146 (19%)
Query: 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 87
KGN F++ ++ +A+ +Y+ A P D + NR++ Y ++ +F
Sbjct: 366 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF--------------- 410
Query: 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147
+LALKD E+ + L+ +K + KA AL ++ Y A D L +D SN
Sbjct: 411 --------QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--SN 460
Query: 148 PLQASLQNLERTTASLIGRRIHGTPE 173
+A+ +R + R H +PE
Sbjct: 461 CKEAA-DGYQRCVMAQYNR--HDSPE 483
>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6 OS=Mus musculus GN=Traf6 PE=1 SV=2
Length = 530
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 151 ASLQNLERTTASLI-GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM- 208
AS NL + I G + P ++C +CL L E + TPCGH FC++C+ +S+
Sbjct: 40 ASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR 99
Query: 209 DRGNKCPLCRAVLF 222
D G+KCP+ +L
Sbjct: 100 DAGHKCPVDNEILL 113
>sp|Q9NZS9|BFAR_HUMAN Bifunctional apoptosis regulator OS=Homo sapiens GN=BFAR PE=1 SV=1
Length = 450
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 170 GTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSC--LFQSMDRGNKCPLCRAVLFITPRT 227
G +F C C +L P T CGHSFCR C L+ + + +CP CR P+
Sbjct: 24 GPQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLALWWASSKKTECPECREKWEGFPK- 82
Query: 228 CAVSVTLNSIIQKNFPE 244
VS+ L I+K FP+
Sbjct: 83 --VSILLRDAIEKLFPD 97
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTL 234
CTLCL P TPCGH FC SC+ + + +CPLCR TP T + V L
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCR-----TPNTHSSLVCL 376
>sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1
Length = 522
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 151 ASLQNLERTTASLI-GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM- 208
AS NL + I G + P ++C +CL L E + TPCGH FC++C+ +S+
Sbjct: 40 ASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR 99
Query: 209 DRGNKCPLCRAVLF 222
D G+KCP+ +L
Sbjct: 100 DAGHKCPVDNEILL 113
>sp|B6CJY4|TRAF6_CERAT TNF receptor-associated factor 6 OS=Cercocebus atys GN=TRAF6 PE=2
SV=1
Length = 522
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 151 ASLQNLERTTASLI-GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM- 208
AS NL + I G + P ++C +CL L E + TPCGH FC++C+ +S+
Sbjct: 40 ASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR 99
Query: 209 DRGNKCPLCRAVLF 222
D G+KCP+ +L
Sbjct: 100 DAGHKCPVDNEILL 113
>sp|A7XUJ6|TRAF6_PIG TNF receptor-associated factor 6 OS=Sus scrofa GN=TRAF6 PE=2 SV=1
Length = 541
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 151 ASLQNLERTTASLI-GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM- 208
AS NL + I G + P ++C +CL L E + TPCGH FC++C+ +S+
Sbjct: 41 ASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR 100
Query: 209 DRGNKCPLCRAVLF 222
D G+KCP+ +L
Sbjct: 101 DAGHKCPVDNEILL 114
>sp|B6CJY5|TRAF6_MACMU TNF receptor-associated factor 6 OS=Macaca mulatta GN=TRAF6 PE=2
SV=1
Length = 522
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 151 ASLQNLERTTASLI-GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM- 208
AS NL + I G + P ++C +CL L E + TPCGH FC++C+ +S+
Sbjct: 40 ASTGNLSSSFMEDIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR 99
Query: 209 DRGNKCPLCRAVLF 222
D G+KCP+ +L
Sbjct: 100 DAGHKCPVDNEILL 113
>sp|O54981|STIP1_CRIGR Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2
SV=1
Length = 543
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSA 80
V +L +KGN+A N ++A+ YS A + P + ++ NRS+AY + + K
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQK------ 56
Query: 81 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 140
A +D K ++L+ + K + KA AL L R++ A+ GL
Sbjct: 57 -----------------AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99
Query: 141 QVDPFSNPLQASLQNLE 157
+ + + L+ LQN+E
Sbjct: 100 KHEANNLQLKEGLQNME 116
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 23/116 (19%)
Query: 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 87
KGN F++ ++ +A+ +Y+ A P D + NR++ Y ++ +F
Sbjct: 366 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF--------------- 410
Query: 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143
+LALKD E+ + L+ +K + KA AL ++ Y A D L++D
Sbjct: 411 --------QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALELD 458
>sp|O35814|STIP1_RAT Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1
SV=1
Length = 543
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSA 80
V +L +KGN+A N ++A+ YS A + P + ++ NRS+AY + + K
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQK------ 56
Query: 81 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 140
A +D K ++L+ + K + KA AL L R++ A+ GL
Sbjct: 57 -----------------AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99
Query: 141 QVDPFSNPLQASLQNLE 157
+ + + L+ LQN+E
Sbjct: 100 KHEANNLQLKEGLQNME 116
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 23/116 (19%)
Query: 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 87
KGN F++ ++ +A+ +Y+ A P D + NR++ Y ++ +F
Sbjct: 366 KGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEF--------------- 410
Query: 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143
+LALKD E+ + L+ +K + KA AL ++ Y A D L +D
Sbjct: 411 --------QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 458
>sp|Q60864|STIP1_MOUSE Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1
Length = 543
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSA 80
V +L +KGN+A N ++A+ YS A + P + ++ NRS+AY + + K
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQK------ 56
Query: 81 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 140
A +D K ++L+ + K + KA AL L R++ A+ GL
Sbjct: 57 -----------------AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99
Query: 141 QVDPFSNPLQASLQNLE 157
+ + + L+ LQN+E
Sbjct: 100 KHEANNLQLKEGLQNME 116
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 23/116 (19%)
Query: 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 87
KGN F++ ++ +A+ +Y+ A P D + NR++ Y ++ +F
Sbjct: 366 KGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEF--------------- 410
Query: 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143
+LALKD E+ + L+ +K + KA AL ++ Y A D L +D
Sbjct: 411 --------QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 458
>sp|P31948|STIP1_HUMAN Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1
Length = 543
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSA 80
V +L +KGN+A N ++A+ YS A + P + ++ NRS+AY + + K
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQK------ 56
Query: 81 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 140
A +D K ++L+ + K + KA AL L R++ A+ GL
Sbjct: 57 -----------------AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99
Query: 141 QVDPFSNPLQASLQNLE 157
+ + + L+ LQN+E
Sbjct: 100 KHEANNPQLKEGLQNME 116
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 23/116 (19%)
Query: 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 87
KGN F++ ++ +A+ +Y+ A P D + NR++ Y ++ +F
Sbjct: 366 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF--------------- 410
Query: 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143
+LALKD E+ + L+ +K + KA AL ++ Y A D L +D
Sbjct: 411 --------QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 458
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNK-CPLCRAVL 221
+DFDC +C+ I T C H FCR+C+ Q++ R CPLCR L
Sbjct: 631 EDFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSL 677
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITP 225
+C +C + L P TT CGH++C CL + CP CR L+ P
Sbjct: 83 LECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQP 130
>sp|Q3ZCC3|TRAF6_BOVIN TNF receptor-associated factor 6 OS=Bos taurus GN=TRAF6 PE=2 SV=1
Length = 542
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-DRGNKCPLCRAVLF 222
G + P ++C +CL L E + TPCGH FC++C+ +S+ D G+KCP+ +L
Sbjct: 56 GYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 114
>sp|Q6DJN2|TRF6B_XENLA TNF receptor-associated factor 6-B OS=Xenopus laevis GN=traf6-b
PE=2 SV=1
Length = 556
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 20/89 (22%)
Query: 165 GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-DRGNKCPLCRAVLFI 223
G + P ++C +CL L E + TPCGH FC++C+ +S+ D G+KCP+
Sbjct: 57 GYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIVKSLRDAGHKCPV------- 109
Query: 224 TPRTCAVSVTLNSIIQKN--FPEEYAERK 250
N I+ +N FP+ +A+R+
Sbjct: 110 ----------DNEILMENQLFPDNFAKRE 128
>sp|Q4R8N7|STIP1_MACFA Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1
PE=2 SV=1
Length = 543
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSA 80
V +L +KGN+A N ++A+ YS A + P + ++ NRS+AY + + K
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQK------ 56
Query: 81 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 140
A +D K + L+ + K + KA AL L R++ A+ GL
Sbjct: 57 -----------------AYEDGCKTVELKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99
Query: 141 QVDPFSNPLQASLQNLE 157
+ + + L+ LQN+E
Sbjct: 100 KHEANNPQLKEGLQNME 116
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 23/116 (19%)
Query: 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 87
KGN F++ ++ +A+ +Y+ A P D + NR++ Y ++ +F
Sbjct: 366 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF--------------- 410
Query: 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143
+LALKD E+ + L+ +K + KA AL ++ Y A D L +D
Sbjct: 411 --------QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 458
>sp|Q8LBL5|PRT1_ARATH E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1
PE=2 SV=2
Length = 410
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 173 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD--RGNKCPLCRAVLFITPRTCAV 230
E D F C +CL+LLY+PI CGH C C+ +SM+ R + CP+CR P C
Sbjct: 19 EIPDQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICRDPYVHFPSVCQ- 77
Query: 231 SVTLNSIIQKNFPEEYAERKSE 252
L +++K +P + +R+ +
Sbjct: 78 --KLYFLLKKMYPLAHKKREEQ 97
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNK-----CPLCRAVLFITPRTCAV 230
DD C+ C +LL P+ CGH +C C+ + K C +C F P+ C +
Sbjct: 188 DDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQECNVCDPRGF--PKVCLI 245
Query: 231 SVTLNSIIQKNFPEEYAERKSE 252
L ++++NFPEEY R S+
Sbjct: 246 ---LEQLLEENFPEEYNSRSSK 264
>sp|Q8K243|TRI68_MOUSE E3 ubiquitin-protein ligase TRIM68 OS=Mus musculus GN=Trim68 PE=2
SV=1
Length = 485
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLF-------QSMDRGNKCPLCRAVLFITPRT 227
++ +C +C+ L EP++ CGH+FC SCL +S + CPLCRA + PR
Sbjct: 11 VEEVNCPICMTFLREPVSISCGHTFCHSCLSGLWKLPGESQNLSYTCPLCRAP--VKPRK 68
Query: 228 CAVSVTLNSIIQK 240
+ L S++ K
Sbjct: 69 LRPNWQLASVVDK 81
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 130 DMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTLCLKLLYE 189
+++ D ++ ++ DP ++ + E G I G P+ D C +C++++ +
Sbjct: 3 EISTDPVVPAVKPDPRTSSVGEGANRHENDDGGSGGSEI-GAPDLDKDLLCPICMQIIKD 61
Query: 190 PITTPCGHSFCRSCLFQSMDRGNKCPLC 217
T CGHSFC C+ + + CP C
Sbjct: 62 AFLTACGHSFCYMCIITHLRNKSDCPCC 89
>sp|Q28DL4|TRAF6_XENTR TNF receptor-associated factor 6 OS=Xenopus tropicalis GN=traf6
PE=2 SV=1
Length = 558
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 165 GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-DRGNKCPL 216
G + P ++C +CL L E + TPCGH FC++C+ +S+ D G+KCP+
Sbjct: 57 GYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACILKSIRDAGHKCPV 109
>sp|Q6ZMN7|PZRN4_HUMAN PDZ domain-containing RING finger protein 4 OS=Homo sapiens
GN=PDZRN4 PE=1 SV=3
Length = 1036
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPL-CRAVLFITPRTCAVSVTLNS 236
+C LC ++L EP+ TPCGH FC SCL R +CPL C+ + P + L S
Sbjct: 16 LECKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCPLQCQP---LAPGELYRVLPLRS 72
Query: 237 IIQK 240
+IQK
Sbjct: 73 LIQK 76
>sp|B5DF45|TRAF6_RAT TNF receptor-associated factor 6 OS=Rattus norvegicus GN=Traf6 PE=2
SV=1
Length = 530
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 165 GRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-DRGNKCPLCRAVLF 222
G + P ++C +CL L E + TPCGH FC++C+ +S+ D G+KCP+ +L
Sbjct: 55 GYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACITKSIRDAGHKCPVDNEILL 113
>sp|P53769|CWC24_YEAST Pre-mRNA-splicing factor CWC24 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CWC24 PE=1 SV=1
Length = 259
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLC 217
F CTLC + P+ T CGH FC SC + M +G KC +C
Sbjct: 197 FKCTLCKEDYKSPVVTNCGHYFCGSCFAKDMKKGTKCFIC 236
>sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1
Length = 564
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 87
+GN AF ++ A+ + +A + P + I+ NRS++ +
Sbjct: 14 QGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSNRSASLL-------------------- 53
Query: 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147
LD E AL DA+K + L+ + K +L + NAL L R++ A + +GL++DP +
Sbjct: 54 ALDKN---EDALTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTNQ 110
Query: 148 PLQASLQNLERTTASLIGRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQS 207
L+ +L++ + T G + + + F KL + P T P F +
Sbjct: 111 QLEDALEDAQYAT---TGAKDPASA-MANLFSAQNLTKLRFNPKTAPF---FQQPDFVAI 163
Query: 208 MDRGNKCP 215
MD+ +K P
Sbjct: 164 MDQISKNP 171
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 27/139 (19%)
Query: 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 87
KG F++ F EAI + A P D + NRS+AY ++ ++
Sbjct: 385 KGVEHFKKGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEY--------------- 429
Query: 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147
+LA+KDA+K + L+ +K ++ K AL + Y A + GL+++ +N
Sbjct: 430 --------KLAIKDADKCIELEPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEA-NN 480
Query: 148 PLQASLQNLERTTASLIGR 166
P L +L R T + + +
Sbjct: 481 P---ELLDLSRKTVAALTK 496
>sp|Q3MV19|TRF6A_XENLA TNF receptor-associated factor 6-A OS=Xenopus laevis GN=traf6-a
PE=1 SV=1
Length = 556
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 151 ASLQNLERTTASLIGRRIHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM-D 209
+ QNL+ + G + P ++C +CL L E + TPCGH FC++C+ +S+ +
Sbjct: 45 GTTQNLD--VEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACILKSLRN 102
Query: 210 RGNKCPLCRAVLF 222
G+KCP+ +L
Sbjct: 103 AGHKCPVDNEILM 115
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 142 VDPFSNPLQASLQNLERTTASLI--GRRIHGTPER-TDDFDCTLCLKLLYEPITTP-CGH 197
V P S + SL L+RT I G I +P + C +CL +L +TT C H
Sbjct: 10 VQPLSKTWELSLYELQRTPQEAITDGLEIAVSPRSLHSELMCPICLDMLKNTMTTKECLH 69
Query: 198 SFCRSCLFQSMDRGNK-CPLCRAVLFITPRTCAVSVTLNSIIQKNFP--EEY 246
FC C+ ++ GNK CP CR L ++ R+ +++I K +P +EY
Sbjct: 70 RFCADCIITALRSGNKECPTCRKKL-VSKRSLRPDPNFDALISKIYPSRDEY 120
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLN 235
++ C +C + E +T C HSFC C+ R +CP+CR + R+ + ++
Sbjct: 378 NELQCIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKEECPICRQEIVTETRSLVLDNCID 437
Query: 236 SIIQKNFPE 244
S++ K PE
Sbjct: 438 SMVDKLSPE 446
>sp|Q91XL2|LNX2_MOUSE Ligand of Numb protein X 2 OS=Mus musculus GN=Lnx2 PE=1 SV=2
Length = 687
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 173 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCR 218
E DD C +CL+ L +P+ TPCGH+FC CL + + CPL R
Sbjct: 44 EVDDDLVCHICLQPLLQPLDTPCGHTFCHKCLRNFLQEKDFCPLDR 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,395,309
Number of Sequences: 539616
Number of extensions: 7408846
Number of successful extensions: 19230
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 331
Number of HSP's that attempted gapping in prelim test: 18403
Number of HSP's gapped (non-prelim): 1017
length of query: 469
length of database: 191,569,459
effective HSP length: 121
effective length of query: 348
effective length of database: 126,275,923
effective search space: 43944021204
effective search space used: 43944021204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)