Query 012162
Match_columns 469
No_of_seqs 607 out of 3918
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 23:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10787 DNA-binding ATP-depen 99.9 3.9E-27 8.5E-32 251.7 18.8 192 263-468 10-209 (784)
2 PF02190 LON: ATP-dependent pr 99.9 1.5E-26 3.2E-31 212.3 13.8 189 264-461 2-205 (205)
3 COG2802 Uncharacterized protei 99.9 3.3E-25 7.1E-30 194.7 17.9 188 262-463 10-208 (221)
4 TIGR00763 lon ATP-dependent pr 99.9 2.2E-25 4.8E-30 240.8 17.9 192 265-468 1-207 (775)
5 COG0466 Lon ATP-dependent Lon 99.9 2.6E-24 5.6E-29 217.2 16.5 193 263-468 9-210 (782)
6 KOG4159 Predicted E3 ubiquitin 99.9 2.4E-24 5.2E-29 209.2 13.1 288 168-461 75-382 (398)
7 KOG0553 TPR repeat-containing 99.8 9.7E-21 2.1E-25 173.7 11.5 125 17-164 76-200 (304)
8 KOG4642 Chaperone-dependent E3 99.7 2.4E-17 5.2E-22 145.9 9.6 204 16-244 4-277 (284)
9 KOG0548 Molecular co-chaperone 99.6 1.8E-15 4E-20 148.3 11.5 116 22-160 358-473 (539)
10 KOG0548 Molecular co-chaperone 99.6 1.7E-15 3.6E-20 148.6 10.4 113 22-157 2-114 (539)
11 PRK15359 type III secretion sy 99.6 1.2E-14 2.7E-19 125.0 11.2 116 24-162 26-141 (144)
12 KOG4234 TPR repeat-containing 99.6 1.5E-14 3.2E-19 125.0 10.7 123 19-164 92-219 (271)
13 KOG0543 FKBP-type peptidyl-pro 99.6 1.5E-14 3.2E-19 138.5 11.0 126 17-165 203-343 (397)
14 PLN03088 SGT1, suppressor of 99.6 1.4E-14 3.1E-19 143.4 10.2 118 23-163 3-120 (356)
15 KOG4648 Uncharacterized conser 99.5 3.5E-14 7.7E-19 131.9 10.3 119 19-160 94-212 (536)
16 TIGR02552 LcrH_SycD type III s 99.4 7.3E-13 1.6E-17 112.7 11.3 118 21-161 16-133 (135)
17 PRK15363 pathogenicity island 99.4 1.3E-12 2.8E-17 111.0 10.8 121 20-163 33-153 (157)
18 KOG0547 Translocase of outer m 99.4 1E-12 2.3E-17 127.5 10.3 100 17-139 110-209 (606)
19 PRK10370 formate-dependent nit 99.4 2.2E-12 4.7E-17 117.0 10.1 117 19-158 70-189 (198)
20 KOG4626 O-linked N-acetylgluco 99.3 1.8E-12 3.9E-17 128.9 7.3 116 22-160 252-367 (966)
21 PRK11189 lipoprotein NlpI; Pro 99.3 3.3E-12 7.3E-17 123.6 8.9 106 20-148 62-167 (296)
22 KOG0376 Serine-threonine phosp 99.3 3.2E-12 6.8E-17 124.9 8.5 121 21-164 3-123 (476)
23 KOG0550 Molecular chaperone (D 99.3 3.9E-12 8.5E-17 121.3 8.3 123 19-165 246-372 (486)
24 smart00504 Ubox Modified RING 99.3 1.7E-12 3.8E-17 94.8 4.0 63 177-241 1-63 (63)
25 PF04564 U-box: U-box domain; 99.3 1.6E-12 3.4E-17 97.4 3.6 68 175-244 2-70 (73)
26 KOG4626 O-linked N-acetylgluco 99.3 7.3E-12 1.6E-16 124.6 6.7 121 20-163 352-472 (966)
27 PF15227 zf-C3HC4_4: zinc fing 99.2 5.1E-12 1.1E-16 83.1 2.9 38 180-217 1-42 (42)
28 COG3063 PilF Tfp pilus assembl 99.2 4.9E-11 1.1E-15 106.0 8.9 107 16-146 29-135 (250)
29 KOG1126 DNA-binding cell divis 99.2 3E-11 6.4E-16 121.8 8.1 123 20-165 419-541 (638)
30 TIGR02795 tol_pal_ybgF tol-pal 99.2 8.2E-11 1.8E-15 97.3 8.7 110 22-154 2-117 (119)
31 KOG2004 Mitochondrial ATP-depe 99.1 3.7E-10 8E-15 115.0 12.7 197 262-469 67-298 (906)
32 KOG0624 dsRNA-activated protei 99.1 9.9E-11 2.1E-15 109.3 8.0 114 18-154 34-147 (504)
33 cd00189 TPR Tetratricopeptide 99.1 4.8E-10 1E-14 87.3 10.2 99 24-145 2-100 (100)
34 TIGR00990 3a0801s09 mitochondr 99.1 2.3E-10 4.9E-15 122.4 10.4 118 20-160 329-446 (615)
35 PF13414 TPR_11: TPR repeat; P 99.1 7.3E-11 1.6E-15 87.8 4.6 67 21-110 2-69 (69)
36 TIGR00990 3a0801s09 mitochondr 99.1 3.4E-10 7.4E-15 121.1 10.3 117 22-161 365-481 (615)
37 KOG1155 Anaphase-promoting com 99.1 6.1E-10 1.3E-14 107.9 10.7 121 22-165 364-484 (559)
38 KOG0551 Hsp90 co-chaperone CNS 99.1 5.5E-10 1.2E-14 104.1 9.9 109 19-150 78-190 (390)
39 PF13414 TPR_11: TPR repeat; P 99.1 1.6E-10 3.4E-15 86.0 4.5 67 55-144 2-69 (69)
40 smart00464 LON Found in ATP-de 99.1 4.4E-10 9.6E-15 88.7 7.2 87 264-458 2-92 (92)
41 PRK09782 bacteriophage N4 rece 99.1 5.7E-10 1.2E-14 123.0 10.5 114 22-158 609-722 (987)
42 TIGR00599 rad18 DNA repair pro 99.1 1.1E-10 2.5E-15 114.1 4.3 69 172-242 21-89 (397)
43 KOG0545 Aryl-hydrocarbon recep 99.0 1.4E-09 3E-14 97.3 10.1 124 17-163 173-315 (329)
44 PF12895 Apc3: Anaphase-promot 99.0 2.1E-10 4.5E-15 89.0 4.2 82 34-139 1-84 (84)
45 KOG0823 Predicted E3 ubiquitin 99.0 1.2E-10 2.7E-15 103.1 3.1 50 174-223 44-96 (230)
46 PLN03208 E3 ubiquitin-protein 99.0 1.6E-10 3.5E-15 100.7 3.7 48 175-222 16-79 (193)
47 PRK15359 type III secretion sy 99.0 6.7E-10 1.4E-14 95.5 7.4 96 42-163 13-108 (144)
48 KOG1155 Anaphase-promoting com 99.0 1E-09 2.2E-14 106.4 9.1 113 28-163 336-448 (559)
49 KOG0317 Predicted E3 ubiquitin 99.0 1.2E-10 2.6E-15 106.1 2.6 52 171-222 233-284 (293)
50 PRK02603 photosystem I assembl 99.0 1.1E-09 2.4E-14 97.3 8.7 106 18-146 31-153 (172)
51 PRK12370 invasion protein regu 99.0 1.1E-09 2.4E-14 115.4 9.9 92 36-150 318-409 (553)
52 KOG0287 Postreplication repair 99.0 1.3E-10 2.9E-15 107.2 2.4 66 174-241 20-85 (442)
53 PRK12370 invasion protein regu 99.0 1E-09 2.2E-14 115.6 9.3 118 21-161 337-455 (553)
54 COG4235 Cytochrome c biogenesi 99.0 3.1E-09 6.8E-14 99.0 11.2 124 17-160 151-274 (287)
55 PRK11189 lipoprotein NlpI; Pro 99.0 1.7E-09 3.6E-14 104.8 9.8 139 21-159 97-283 (296)
56 TIGR03302 OM_YfiO outer membra 99.0 1.8E-09 4E-14 100.9 9.8 120 16-158 27-160 (235)
57 COG5010 TadD Flp pilus assembl 99.0 2.9E-09 6.3E-14 96.8 10.4 120 22-164 100-219 (257)
58 PRK15331 chaperone protein Sic 99.0 3.4E-09 7.4E-14 90.6 10.2 119 20-162 35-153 (165)
59 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.4E-10 5.3E-15 74.3 2.5 38 180-217 1-39 (39)
60 KOG0547 Translocase of outer m 99.0 3.8E-09 8.2E-14 103.1 11.1 109 19-150 323-431 (606)
61 PF14835 zf-RING_6: zf-RING of 99.0 1.5E-10 3.2E-15 81.0 0.9 59 176-238 6-65 (65)
62 PRK15179 Vi polysaccharide bio 99.0 2.5E-09 5.4E-14 113.7 10.5 115 21-158 85-199 (694)
63 COG3063 PilF Tfp pilus assembl 99.0 3.5E-09 7.6E-14 94.4 9.4 116 21-159 68-185 (250)
64 KOG1126 DNA-binding cell divis 98.9 2.4E-09 5.3E-14 108.2 8.9 103 22-147 455-557 (638)
65 KOG4555 TPR repeat-containing 98.9 6.5E-09 1.4E-13 84.1 9.4 107 17-146 38-148 (175)
66 PRK10370 formate-dependent nit 98.9 2.1E-09 4.6E-14 97.5 7.4 104 35-161 52-158 (198)
67 PRK10803 tol-pal system protei 98.9 4E-09 8.7E-14 99.5 9.3 112 22-156 142-260 (263)
68 CHL00033 ycf3 photosystem I as 98.9 5.8E-09 1.3E-13 92.3 9.5 107 18-147 31-154 (168)
69 TIGR02521 type_IV_pilW type IV 98.9 7.3E-09 1.6E-13 95.5 10.6 104 17-143 26-129 (234)
70 KOG1125 TPR repeat-containing 98.9 9.7E-10 2.1E-14 109.4 4.8 101 22-145 430-530 (579)
71 PF13432 TPR_16: Tetratricopep 98.9 2.2E-09 4.8E-14 78.7 4.4 64 61-147 2-65 (65)
72 PRK09782 bacteriophage N4 rece 98.9 6.5E-09 1.4E-13 114.8 9.8 108 31-162 585-692 (987)
73 COG5432 RAD18 RING-finger-cont 98.9 1.2E-09 2.5E-14 99.0 3.2 66 174-241 22-87 (391)
74 PF13432 TPR_16: Tetratricopep 98.9 2.8E-09 6.1E-14 78.2 4.7 64 27-113 2-65 (65)
75 TIGR02521 type_IV_pilW type IV 98.9 1.3E-08 2.8E-13 93.8 10.2 115 22-159 65-181 (234)
76 PLN02789 farnesyltranstransfer 98.9 1.3E-08 2.8E-13 99.0 10.2 124 33-156 48-185 (320)
77 PF13429 TPR_15: Tetratricopep 98.9 2.6E-09 5.6E-14 102.8 5.3 121 20-163 144-264 (280)
78 KOG0320 Predicted E3 ubiquitin 98.8 1.2E-09 2.6E-14 92.4 2.5 50 173-222 127-178 (187)
79 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.7E-09 3.7E-14 74.6 2.8 46 177-222 2-48 (50)
80 KOG0624 dsRNA-activated protei 98.8 1.9E-08 4.1E-13 94.3 10.5 126 17-165 264-393 (504)
81 PF13639 zf-RING_2: Ring finge 98.8 1.1E-09 2.4E-14 73.4 1.7 40 179-218 2-44 (44)
82 TIGR02552 LcrH_SycD type III s 98.8 9.9E-09 2.1E-13 87.1 8.0 97 43-162 4-100 (135)
83 PRK15174 Vi polysaccharide exp 98.8 1.2E-08 2.6E-13 109.5 9.6 101 29-152 219-323 (656)
84 PRK15174 Vi polysaccharide exp 98.8 1.2E-08 2.6E-13 109.5 9.4 106 22-150 246-355 (656)
85 PF06552 TOM20_plant: Plant sp 98.8 7.6E-09 1.7E-13 89.2 6.1 111 37-160 6-127 (186)
86 KOG1308 Hsp70-interacting prot 98.8 2.6E-09 5.7E-14 100.2 3.2 106 17-145 109-214 (377)
87 KOG1174 Anaphase-promoting com 98.8 8.3E-09 1.8E-13 98.8 6.4 144 19-163 331-521 (564)
88 PHA02929 N1R/p28-like protein; 98.8 3.6E-09 7.8E-14 96.6 3.4 48 175-222 172-227 (238)
89 KOG1173 Anaphase-promoting com 98.8 2E-08 4.3E-13 99.9 8.7 111 23-156 415-532 (611)
90 TIGR03302 OM_YfiO outer membra 98.8 5.5E-08 1.2E-12 91.0 11.1 118 22-162 70-218 (235)
91 PRK11788 tetratricopeptide rep 98.8 2.5E-08 5.4E-13 100.5 8.9 104 22-148 180-284 (389)
92 PF13512 TPR_18: Tetratricopep 98.7 6.2E-08 1.3E-12 81.1 9.3 109 22-153 10-139 (142)
93 PF00097 zf-C3HC4: Zinc finger 98.7 6.2E-09 1.3E-13 68.6 2.6 38 180-217 1-41 (41)
94 KOG2076 RNA polymerase III tra 98.7 9.5E-08 2.1E-12 99.8 12.1 127 18-144 135-272 (895)
95 PLN02789 farnesyltranstransfer 98.7 5.9E-08 1.3E-12 94.3 9.1 115 21-158 105-228 (320)
96 PRK10049 pgaA outer membrane p 98.7 4.8E-08 1E-12 106.9 9.5 113 21-157 48-160 (765)
97 PRK15179 Vi polysaccharide bio 98.7 9E-08 2E-12 102.0 10.6 116 20-158 118-234 (694)
98 PRK11447 cellulose synthase su 98.7 6.5E-08 1.4E-12 110.6 10.1 126 27-156 274-428 (1157)
99 PF13371 TPR_9: Tetratricopept 98.7 7.7E-08 1.7E-12 72.2 6.9 70 29-121 2-71 (73)
100 KOG4162 Predicted calmodulin-b 98.7 7.3E-08 1.6E-12 99.0 8.8 104 22-148 684-789 (799)
101 COG4783 Putative Zn-dependent 98.6 1.3E-07 2.8E-12 93.0 9.8 121 22-165 306-426 (484)
102 PF14559 TPR_19: Tetratricopep 98.6 3.9E-08 8.4E-13 72.7 4.5 67 32-121 1-67 (68)
103 PF13371 TPR_9: Tetratricopept 98.6 5.2E-08 1.1E-12 73.1 5.3 70 63-155 2-71 (73)
104 PRK10049 pgaA outer membrane p 98.6 1.2E-07 2.7E-12 103.7 10.0 112 22-156 359-470 (765)
105 COG1729 Uncharacterized protei 98.6 3.1E-07 6.7E-12 84.8 10.9 112 22-156 141-258 (262)
106 PF13445 zf-RING_UBOX: RING-ty 98.6 1.8E-08 4E-13 66.1 2.1 35 180-215 1-43 (43)
107 TIGR02917 PEP_TPR_lipo putativ 98.6 1.6E-07 3.5E-12 104.2 10.8 114 19-155 122-235 (899)
108 COG4783 Putative Zn-dependent 98.6 1.9E-07 4.1E-12 91.9 9.6 118 20-160 338-455 (484)
109 PRK11906 transcriptional regul 98.6 4E-07 8.8E-12 90.0 11.4 118 24-155 257-380 (458)
110 PF14559 TPR_19: Tetratricopep 98.6 1.4E-07 3E-12 69.7 6.1 60 96-155 8-67 (68)
111 cd00162 RING RING-finger (Real 98.6 4E-08 8.7E-13 66.0 2.8 42 179-220 1-44 (45)
112 KOG2003 TPR repeat-containing 98.6 8.3E-08 1.8E-12 92.9 5.8 115 21-158 489-603 (840)
113 PRK11788 tetratricopeptide rep 98.5 3.5E-07 7.7E-12 92.1 10.3 111 23-156 108-223 (389)
114 PRK11447 cellulose synthase su 98.5 2.3E-07 5E-12 106.2 9.8 102 23-147 604-705 (1157)
115 PF14634 zf-RING_5: zinc-RING 98.5 5.5E-08 1.2E-12 65.0 2.8 41 179-219 1-44 (44)
116 KOG2660 Locus-specific chromos 98.5 3.4E-08 7.3E-13 92.1 2.2 76 174-249 12-90 (331)
117 KOG0550 Molecular chaperone (D 98.5 1.7E-07 3.6E-12 90.2 6.7 109 6-137 33-141 (486)
118 PHA02926 zinc finger-like prot 98.5 4.8E-08 1E-12 86.0 2.3 48 175-222 168-230 (242)
119 PRK15363 pathogenicity island 98.5 3.2E-07 7E-12 78.2 7.0 92 49-163 27-119 (157)
120 COG4785 NlpI Lipoprotein NlpI, 98.5 1.9E-07 4.1E-12 82.5 5.6 120 18-160 61-180 (297)
121 PF09976 TPR_21: Tetratricopep 98.5 4.6E-07 9.9E-12 78.0 8.0 95 22-140 48-145 (145)
122 COG5152 Uncharacterized conser 98.5 4.5E-08 9.7E-13 83.9 1.7 120 104-239 135-255 (259)
123 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 1.1E-07 2.5E-12 93.7 4.5 69 51-142 70-141 (453)
124 COG5010 TadD Flp pilus assembl 98.5 3.9E-07 8.4E-12 83.1 7.1 107 26-155 70-176 (257)
125 PF13525 YfiO: Outer membrane 98.5 1E-06 2.2E-11 80.4 9.9 112 21-155 4-132 (203)
126 PRK10866 outer membrane biogen 98.5 7.3E-07 1.6E-11 83.5 9.2 112 20-154 30-165 (243)
127 COG5574 PEX10 RING-finger-cont 98.5 8.3E-08 1.8E-12 86.7 2.7 49 175-223 213-263 (271)
128 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.2E-07 9.1E-12 89.8 7.7 71 16-109 69-142 (453)
129 TIGR02917 PEP_TPR_lipo putativ 98.5 6.4E-07 1.4E-11 99.4 10.2 108 26-156 571-678 (899)
130 KOG1173 Anaphase-promoting com 98.4 8.7E-07 1.9E-11 88.4 9.7 115 28-165 386-507 (611)
131 KOG1125 TPR repeat-containing 98.4 5E-07 1.1E-11 90.4 8.1 135 17-153 314-470 (579)
132 PRK10153 DNA-binding transcrip 98.4 1.2E-06 2.5E-11 90.8 10.9 129 19-148 336-488 (517)
133 KOG2164 Predicted E3 ubiquitin 98.4 1.2E-07 2.7E-12 93.4 3.5 47 177-223 186-237 (513)
134 PLN03088 SGT1, suppressor of 98.4 6.5E-07 1.4E-11 88.9 8.4 84 21-127 35-118 (356)
135 KOG0553 TPR repeat-containing 98.4 3.5E-07 7.7E-12 84.9 5.8 87 21-130 114-200 (304)
136 PRK14574 hmsH outer membrane p 98.4 1E-06 2.2E-11 95.7 10.0 110 21-153 33-142 (822)
137 PF12688 TPR_5: Tetratrico pep 98.4 1.1E-06 2.5E-11 72.3 7.9 96 23-141 2-103 (120)
138 KOG1128 Uncharacterized conser 98.4 9E-07 2E-11 90.8 8.1 110 28-160 491-600 (777)
139 smart00184 RING Ring finger. E 98.4 2.8E-07 6.1E-12 59.6 2.8 38 180-217 1-39 (39)
140 KOG2177 Predicted E3 ubiquitin 98.4 2.2E-07 4.7E-12 91.4 3.1 65 174-242 10-74 (386)
141 KOG1400 Predicted ATP-dependen 98.3 5.1E-07 1.1E-11 84.5 4.8 211 259-469 61-324 (371)
142 KOG2002 TPR-containing nuclear 98.3 2.6E-06 5.7E-11 89.9 10.6 114 19-155 161-278 (1018)
143 PF13429 TPR_15: Tetratricopep 98.3 7.4E-07 1.6E-11 85.7 6.2 116 23-161 111-228 (280)
144 KOG2002 TPR-containing nuclear 98.3 4.2E-06 9.2E-11 88.4 12.1 113 20-155 305-422 (1018)
145 PRK11906 transcriptional regul 98.3 1E-06 2.2E-11 87.3 7.1 92 35-149 317-408 (458)
146 KOG0311 Predicted E3 ubiquitin 98.3 1.3E-07 2.8E-12 88.8 0.3 70 174-244 40-111 (381)
147 COG2956 Predicted N-acetylgluc 98.3 2.2E-06 4.9E-11 80.1 8.4 103 22-147 180-283 (389)
148 KOG3060 Uncharacterized conser 98.3 4.4E-06 9.5E-11 75.8 9.8 113 25-160 89-201 (289)
149 KOG0543 FKBP-type peptidyl-pro 98.3 4.6E-06 9.9E-11 80.8 10.5 101 22-145 257-358 (397)
150 PRK14574 hmsH outer membrane p 98.3 2.5E-06 5.5E-11 92.7 9.8 108 23-154 103-210 (822)
151 cd05804 StaR_like StaR_like; a 98.3 2.5E-06 5.3E-11 84.9 8.8 101 22-145 114-218 (355)
152 PRK14720 transcript cleavage f 98.2 3.3E-06 7.1E-11 91.2 9.0 141 6-155 18-158 (906)
153 KOG1310 WD40 repeat protein [G 98.2 3.5E-06 7.5E-11 83.4 7.6 128 16-163 368-495 (758)
154 KOG1156 N-terminal acetyltrans 98.2 6E-06 1.3E-10 83.8 9.1 118 23-163 8-125 (700)
155 cd00189 TPR Tetratricopeptide 98.2 9.2E-06 2E-10 62.5 8.3 80 58-160 2-81 (100)
156 CHL00033 ycf3 photosystem I as 98.2 2.4E-06 5.3E-11 75.4 5.4 109 29-160 6-119 (168)
157 PF12678 zf-rbx1: RING-H2 zinc 98.1 1.8E-06 3.8E-11 64.5 3.3 40 179-218 21-73 (73)
158 KOG3060 Uncharacterized conser 98.1 2E-05 4.4E-10 71.5 10.2 120 22-164 120-242 (289)
159 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 1.1E-05 2.3E-10 80.3 9.1 90 28-140 206-295 (395)
160 TIGR00570 cdk7 CDK-activating 98.1 2.3E-06 5E-11 80.6 4.0 46 177-222 3-54 (309)
161 PRK10153 DNA-binding transcrip 98.1 1E-05 2.3E-10 83.8 9.2 86 23-132 421-507 (517)
162 KOG2076 RNA polymerase III tra 98.1 1.9E-05 4.2E-10 83.0 10.9 97 22-141 207-308 (895)
163 TIGR00540 hemY_coli hemY prote 98.1 1.3E-05 2.8E-10 81.5 9.1 118 21-162 262-385 (409)
164 PF13424 TPR_12: Tetratricopep 98.1 1.3E-06 2.8E-11 66.4 1.4 65 55-142 4-75 (78)
165 cd05804 StaR_like StaR_like; a 98.1 1.2E-05 2.6E-10 80.0 8.7 116 22-157 43-158 (355)
166 KOG1813 Predicted E3 ubiquitin 98.1 1.5E-06 3.3E-11 79.8 1.7 106 105-223 181-287 (313)
167 TIGR00540 hemY_coli hemY prote 98.0 2.7E-05 5.9E-10 79.1 10.7 122 18-162 80-202 (409)
168 KOG0978 E3 ubiquitin ligase in 98.0 2.2E-06 4.7E-11 89.0 2.6 48 175-222 641-689 (698)
169 KOG1941 Acetylcholine receptor 98.0 2.5E-05 5.4E-10 74.3 8.7 97 23-142 123-235 (518)
170 PRK02603 photosystem I assembl 98.0 8.1E-06 1.8E-10 72.4 5.0 95 44-161 21-120 (172)
171 COG4235 Cytochrome c biogenesi 98.0 2.4E-05 5.3E-10 73.3 8.1 97 37-156 137-236 (287)
172 KOG0824 Predicted E3 ubiquitin 98.0 2.7E-06 5.8E-11 78.4 1.4 47 176-222 6-53 (324)
173 PF13431 TPR_17: Tetratricopep 98.0 5.7E-06 1.2E-10 51.7 2.5 33 102-134 2-34 (34)
174 KOG1129 TPR repeat-containing 97.9 8E-06 1.7E-10 76.6 4.2 119 22-163 290-445 (478)
175 KOG1127 TPR repeat-containing 97.9 7E-06 1.5E-10 86.8 4.1 109 22-153 562-670 (1238)
176 TIGR02795 tol_pal_ybgF tol-pal 97.9 2.4E-05 5.1E-10 64.2 6.5 69 56-147 2-73 (119)
177 PF11789 zf-Nse: Zinc-finger o 97.9 6.1E-06 1.3E-10 58.0 2.2 42 175-216 9-53 (57)
178 KOG1127 TPR repeat-containing 97.9 2E-05 4.3E-10 83.5 6.6 140 22-162 492-645 (1238)
179 PF09976 TPR_21: Tetratricopep 97.9 0.00011 2.4E-09 63.1 10.3 115 19-157 8-128 (145)
180 KOG4162 Predicted calmodulin-b 97.9 4.8E-05 1E-09 78.8 9.1 120 23-165 651-772 (799)
181 KOG1129 TPR repeat-containing 97.9 3.3E-05 7.2E-10 72.5 7.2 114 17-153 251-364 (478)
182 KOG1128 Uncharacterized conser 97.9 3.1E-05 6.8E-10 79.8 7.6 101 22-145 519-619 (777)
183 PF00515 TPR_1: Tetratricopept 97.9 9.5E-06 2.1E-10 50.8 2.1 34 113-146 1-34 (34)
184 COG4105 ComL DNA uptake lipopr 97.9 0.00013 2.8E-09 67.0 10.4 114 21-157 33-160 (254)
185 PF13424 TPR_12: Tetratricopep 97.8 1.2E-05 2.6E-10 61.0 3.1 66 21-109 4-76 (78)
186 PRK10747 putative protoheme IX 97.8 8.2E-05 1.8E-09 75.3 10.1 112 21-156 83-196 (398)
187 PRK10747 putative protoheme IX 97.8 0.00011 2.3E-09 74.5 10.8 101 25-148 121-222 (398)
188 COG2956 Predicted N-acetylgluc 97.8 6.9E-05 1.5E-09 70.4 8.2 62 96-157 197-259 (389)
189 KOG4628 Predicted E3 ubiquitin 97.8 1.9E-05 4.2E-10 75.7 3.6 45 178-222 230-278 (348)
190 PF07719 TPR_2: Tetratricopept 97.8 2.3E-05 4.9E-10 48.9 2.8 34 113-146 1-34 (34)
191 PF13428 TPR_14: Tetratricopep 97.8 2.2E-05 4.8E-10 52.4 2.8 43 113-155 1-43 (44)
192 KOG2003 TPR repeat-containing 97.7 0.00017 3.6E-09 70.5 9.5 52 21-72 557-608 (840)
193 COG5540 RING-finger-containing 97.7 1.7E-05 3.6E-10 73.1 2.5 44 178-221 324-371 (374)
194 KOG0495 HAT repeat protein [RN 97.7 0.0004 8.8E-09 70.9 12.3 144 22-165 583-737 (913)
195 KOG1840 Kinesin light chain [C 97.7 4.7E-05 1E-09 77.9 5.6 99 22-143 199-313 (508)
196 COG5243 HRD1 HRD ubiquitin lig 97.7 2.4E-05 5.2E-10 73.9 3.0 49 175-223 285-346 (491)
197 PF04733 Coatomer_E: Coatomer 97.7 0.00022 4.7E-09 68.6 9.5 120 21-163 130-251 (290)
198 KOG1840 Kinesin light chain [C 97.7 6.2E-05 1.3E-09 77.0 6.0 103 18-143 279-397 (508)
199 KOG4234 TPR repeat-containing 97.7 0.0002 4.3E-09 62.9 8.1 72 21-115 133-204 (271)
200 KOG0802 E3 ubiquitin ligase [P 97.7 1.6E-05 3.4E-10 83.3 1.6 48 175-222 289-341 (543)
201 KOG1174 Anaphase-promoting com 97.6 0.00015 3.3E-09 70.2 7.5 54 96-149 317-370 (564)
202 KOG2879 Predicted E3 ubiquitin 97.6 7.5E-05 1.6E-09 68.1 4.8 51 171-221 233-286 (298)
203 PRK14720 transcript cleavage f 97.6 0.00013 2.8E-09 79.2 7.3 96 22-143 65-179 (906)
204 KOG4172 Predicted E3 ubiquitin 97.6 1.2E-05 2.5E-10 53.9 -0.4 44 178-221 8-53 (62)
205 KOG1156 N-terminal acetyltrans 97.6 0.0003 6.5E-09 71.8 9.3 103 22-147 41-143 (700)
206 PF12895 Apc3: Anaphase-promot 97.6 5E-05 1.1E-09 58.6 2.8 61 21-105 24-84 (84)
207 PRK10866 outer membrane biogen 97.6 0.00072 1.6E-08 63.4 11.1 130 22-160 69-222 (243)
208 KOG0546 HSP90 co-chaperone CPR 97.6 9.1E-05 2E-09 70.5 4.9 121 22-165 222-361 (372)
209 PF00515 TPR_1: Tetratricopept 97.6 9.2E-05 2E-09 46.2 3.4 34 22-55 1-34 (34)
210 PF13525 YfiO: Outer membrane 97.5 0.00055 1.2E-08 62.4 9.6 126 22-159 42-187 (203)
211 PF03704 BTAD: Bacterial trans 97.5 0.00071 1.5E-08 58.0 9.9 97 21-140 5-123 (146)
212 PF13431 TPR_17: Tetratricopep 97.5 2.1E-05 4.5E-10 49.2 0.0 29 44-72 1-29 (34)
213 PF13428 TPR_14: Tetratricopep 97.5 7.2E-05 1.6E-09 49.8 2.6 43 56-121 1-43 (44)
214 KOG0297 TNF receptor-associate 97.5 5.7E-05 1.2E-09 75.5 3.0 66 174-240 18-84 (391)
215 PF14853 Fis1_TPR_C: Fis1 C-te 97.5 0.00016 3.6E-09 49.9 4.2 49 114-162 2-50 (53)
216 COG4700 Uncharacterized protei 97.5 0.00041 8.9E-09 60.3 7.5 103 22-147 89-194 (251)
217 PF12688 TPR_5: Tetratrico pep 97.5 0.0003 6.4E-09 58.0 6.1 67 56-145 1-70 (120)
218 PF07719 TPR_2: Tetratricopept 97.5 0.00021 4.5E-09 44.4 4.1 34 22-55 1-34 (34)
219 COG5222 Uncharacterized conser 97.4 0.00023 5E-09 65.4 5.5 67 176-243 273-341 (427)
220 KOG1002 Nucleotide excision re 97.4 8.3E-05 1.8E-09 73.4 2.6 52 172-223 531-587 (791)
221 PRK10803 tol-pal system protei 97.4 0.00026 5.6E-09 67.0 5.9 74 57-153 143-220 (263)
222 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.00074 1.6E-08 67.3 8.8 104 34-163 181-284 (395)
223 PF12968 DUF3856: Domain of Un 97.4 0.0011 2.3E-08 53.3 7.8 98 21-141 8-128 (144)
224 PF04781 DUF627: Protein of un 97.3 0.0013 2.9E-08 52.4 7.8 104 28-143 2-108 (111)
225 PF12569 NARP1: NMDA receptor- 97.3 0.0014 3.1E-08 67.8 10.2 99 22-143 194-292 (517)
226 KOG4265 Predicted E3 ubiquitin 97.3 0.00013 2.9E-09 69.4 2.4 47 176-222 289-336 (349)
227 COG4785 NlpI Lipoprotein NlpI, 97.3 0.00035 7.5E-09 62.2 4.7 73 55-150 64-136 (297)
228 PF12861 zf-Apc11: Anaphase-pr 97.3 0.00024 5.2E-09 53.5 3.0 46 177-222 21-82 (85)
229 PF06552 TOM20_plant: Plant sp 97.3 0.0011 2.4E-08 57.6 7.4 82 21-114 24-115 (186)
230 PRK15331 chaperone protein Sic 97.2 0.00059 1.3E-08 58.7 5.7 92 48-162 29-120 (165)
231 PF04733 Coatomer_E: Coatomer 97.2 0.001 2.3E-08 63.9 8.1 93 37-152 182-275 (290)
232 PF13512 TPR_18: Tetratricopep 97.2 0.0011 2.3E-08 55.8 6.9 83 23-115 48-135 (142)
233 KOG3785 Uncharacterized conser 97.2 0.0015 3.2E-08 62.4 8.4 125 28-152 63-224 (557)
234 KOG0495 HAT repeat protein [RN 97.2 0.0019 4.2E-08 66.2 9.5 114 26-162 655-768 (913)
235 KOG4692 Predicted E3 ubiquitin 97.2 0.00031 6.7E-09 66.1 3.6 53 169-221 414-466 (489)
236 PF13181 TPR_8: Tetratricopept 97.2 0.00022 4.7E-09 44.4 1.7 33 114-146 2-34 (34)
237 KOG4507 Uncharacterized conser 97.2 0.0011 2.5E-08 66.8 7.4 102 33-157 618-720 (886)
238 KOG1785 Tyrosine kinase negati 97.1 0.00021 4.6E-09 68.2 1.8 47 178-224 370-418 (563)
239 PF14938 SNAP: Soluble NSF att 97.1 0.0012 2.5E-08 63.5 6.7 108 21-151 113-234 (282)
240 KOG2376 Signal recognition par 97.1 0.0035 7.6E-08 63.6 9.9 124 22-148 12-145 (652)
241 PF15015 NYD-SP12_N: Spermatog 97.1 0.0033 7.2E-08 61.2 9.4 95 22-139 176-288 (569)
242 KOG4555 TPR repeat-containing 97.0 0.00095 2.1E-08 54.6 4.2 62 62-146 49-110 (175)
243 KOG4648 Uncharacterized conser 96.9 0.0009 2E-08 63.5 3.9 68 60-150 101-168 (536)
244 KOG1130 Predicted G-alpha GTPa 96.9 0.00052 1.1E-08 66.5 2.3 99 22-143 195-305 (639)
245 COG3118 Thioredoxin domain-con 96.9 0.0074 1.6E-07 56.7 9.5 129 23-159 135-284 (304)
246 KOG3785 Uncharacterized conser 96.9 0.0055 1.2E-07 58.6 8.7 95 30-151 30-125 (557)
247 COG1729 Uncharacterized protei 96.8 0.0023 5E-08 59.4 6.1 76 59-157 144-222 (262)
248 PF14938 SNAP: Soluble NSF att 96.8 0.002 4.3E-08 62.0 5.8 103 22-148 75-190 (282)
249 KOG0376 Serine-threonine phosp 96.8 0.0027 5.8E-08 63.2 6.3 79 23-124 39-117 (476)
250 KOG3364 Membrane protein invol 96.8 0.0074 1.6E-07 49.8 7.6 70 94-163 50-121 (149)
251 PF13181 TPR_8: Tetratricopept 96.7 0.0019 4.2E-08 40.0 3.3 34 22-55 1-34 (34)
252 KOG0804 Cytoplasmic Zn-finger 96.7 0.00083 1.8E-08 65.6 2.2 50 170-221 168-221 (493)
253 KOG1039 Predicted E3 ubiquitin 96.7 0.00087 1.9E-08 64.9 2.2 47 175-221 159-220 (344)
254 KOG4340 Uncharacterized conser 96.7 0.0024 5.2E-08 59.6 4.9 97 20-139 142-267 (459)
255 KOG3824 Huntingtin interacting 96.7 0.0041 9E-08 58.3 6.2 84 17-123 111-194 (472)
256 PF12569 NARP1: NMDA receptor- 96.7 0.0027 5.9E-08 65.7 5.7 71 57-150 195-265 (517)
257 PF13174 TPR_6: Tetratricopept 96.6 0.0023 4.9E-08 39.2 2.9 33 114-146 1-33 (33)
258 KOG1130 Predicted G-alpha GTPa 96.5 0.0044 9.6E-08 60.3 5.8 98 22-142 235-344 (639)
259 COG3071 HemY Uncharacterized e 96.5 0.007 1.5E-07 58.8 6.9 101 22-148 263-363 (400)
260 COG0457 NrfG FOG: TPR repeat [ 96.5 0.026 5.7E-07 50.4 10.6 100 23-145 96-199 (291)
261 smart00028 TPR Tetratricopepti 96.5 0.0042 9.1E-08 36.9 3.6 33 114-146 2-34 (34)
262 KOG4340 Uncharacterized conser 96.5 0.012 2.7E-07 55.0 8.0 108 31-165 19-126 (459)
263 KOG0826 Predicted E3 ubiquitin 96.5 0.002 4.3E-08 60.5 2.9 47 175-221 298-345 (357)
264 KOG2471 TPR repeat-containing 96.4 0.0069 1.5E-07 60.2 6.3 112 21-155 239-377 (696)
265 PF13176 TPR_7: Tetratricopept 96.4 0.0011 2.3E-08 41.9 0.5 29 115-143 1-29 (36)
266 KOG2376 Signal recognition par 96.4 0.016 3.5E-07 59.0 8.8 104 23-149 111-260 (652)
267 KOG0551 Hsp90 co-chaperone CNS 96.4 0.022 4.7E-07 54.2 9.0 72 17-111 114-185 (390)
268 KOG2114 Vacuolar assembly/sort 96.3 0.012 2.5E-07 62.2 7.6 43 176-221 839-882 (933)
269 PRK10941 hypothetical protein; 96.2 0.0081 1.8E-07 56.8 5.8 76 58-156 183-258 (269)
270 COG0457 NrfG FOG: TPR repeat [ 96.2 0.022 4.8E-07 50.8 8.4 92 31-145 139-234 (291)
271 PF05843 Suf: Suppressor of fo 96.2 0.031 6.7E-07 53.6 9.7 113 25-160 4-120 (280)
272 KOG4367 Predicted Zn-finger pr 96.2 0.0028 6E-08 61.5 2.1 36 175-210 2-37 (699)
273 KOG4151 Myosin assembly protei 96.1 0.015 3.1E-07 61.4 7.4 122 19-163 50-177 (748)
274 COG2976 Uncharacterized protei 96.1 0.031 6.7E-07 49.4 8.1 100 22-146 89-192 (207)
275 COG3071 HemY Uncharacterized e 96.1 0.045 9.7E-07 53.3 9.9 121 18-161 80-201 (400)
276 PRK10941 hypothetical protein; 96.1 0.022 4.7E-07 54.0 7.7 75 26-123 185-259 (269)
277 KOG2796 Uncharacterized conser 96.0 0.03 6.5E-07 51.6 8.0 102 24-148 214-321 (366)
278 COG4976 Predicted methyltransf 96.0 0.0055 1.2E-07 55.2 3.2 53 96-148 12-64 (287)
279 KOG2610 Uncharacterized conser 96.0 0.035 7.6E-07 52.9 8.4 110 26-158 107-220 (491)
280 KOG4185 Predicted E3 ubiquitin 95.9 0.0044 9.6E-08 60.0 2.4 65 177-241 3-77 (296)
281 KOG0825 PHD Zn-finger protein 95.9 0.0018 3.9E-08 67.2 -0.3 46 176-221 122-170 (1134)
282 KOG3824 Huntingtin interacting 95.9 0.029 6.3E-07 52.8 7.6 58 96-153 133-190 (472)
283 KOG2053 Mitochondrial inherita 95.9 0.02 4.2E-07 61.0 7.1 93 30-145 17-109 (932)
284 PF14561 TPR_20: Tetratricopep 95.8 0.04 8.6E-07 42.9 6.8 66 96-161 5-72 (90)
285 KOG0828 Predicted E3 ubiquitin 95.8 0.0036 7.9E-08 61.7 1.1 48 174-221 568-633 (636)
286 KOG0545 Aryl-hydrocarbon recep 95.8 0.048 1E-06 49.8 8.1 75 22-119 230-304 (329)
287 COG4105 ComL DNA uptake lipopr 95.7 0.091 2E-06 48.6 10.0 125 23-162 72-216 (254)
288 KOG4275 Predicted E3 ubiquitin 95.7 0.0038 8.3E-08 57.6 1.0 41 177-221 300-341 (350)
289 KOG3800 Predicted E3 ubiquitin 95.7 0.0085 1.8E-07 55.5 3.0 44 179-222 2-51 (300)
290 PF13176 TPR_7: Tetratricopept 95.6 0.013 2.8E-07 36.9 2.9 29 24-52 1-29 (36)
291 PLN03081 pentatricopeptide (PP 95.6 0.032 6.8E-07 61.0 7.7 100 23-147 427-528 (697)
292 KOG3081 Vesicle coat complex C 95.6 0.11 2.5E-06 48.1 9.8 66 96-161 190-255 (299)
293 PF14447 Prok-RING_4: Prokaryo 95.5 0.0052 1.1E-07 42.0 0.8 45 176-222 6-50 (55)
294 smart00028 TPR Tetratricopepti 95.5 0.025 5.4E-07 33.3 3.9 33 23-55 2-34 (34)
295 KOG1734 Predicted RING-contain 95.5 0.015 3.2E-07 53.2 3.8 48 175-222 222-281 (328)
296 KOG1571 Predicted E3 ubiquitin 95.5 0.0093 2E-07 57.1 2.5 47 173-222 301-347 (355)
297 PLN03077 Protein ECB2; Provisi 95.4 0.064 1.4E-06 60.0 9.5 43 96-138 674-716 (857)
298 COG5219 Uncharacterized conser 95.4 0.0097 2.1E-07 63.2 2.7 48 174-221 1466-1522(1525)
299 KOG4642 Chaperone-dependent E3 95.4 0.015 3.2E-07 52.9 3.4 59 96-154 27-85 (284)
300 KOG1915 Cell cycle control pro 95.4 0.11 2.4E-06 51.9 9.6 105 23-150 74-178 (677)
301 PF10300 DUF3808: Protein of u 95.3 0.051 1.1E-06 56.1 7.8 97 22-142 267-376 (468)
302 PF13174 TPR_6: Tetratricopept 95.3 0.028 6.1E-07 34.1 3.7 33 23-55 1-33 (33)
303 PF14853 Fis1_TPR_C: Fis1 C-te 95.3 0.033 7.2E-07 38.4 4.3 42 58-122 3-44 (53)
304 KOG4739 Uncharacterized protei 95.2 0.0087 1.9E-07 54.3 1.5 59 178-242 4-64 (233)
305 KOG1645 RING-finger-containing 95.1 0.009 1.9E-07 57.8 1.4 44 178-221 5-55 (463)
306 KOG4814 Uncharacterized conser 95.1 0.078 1.7E-06 54.6 7.9 97 23-142 355-457 (872)
307 KOG3161 Predicted E3 ubiquitin 95.1 0.0086 1.9E-07 61.1 1.2 62 176-237 10-75 (861)
308 PF03704 BTAD: Bacterial trans 95.1 0.04 8.6E-07 47.1 5.2 63 22-107 62-124 (146)
309 COG4700 Uncharacterized protei 95.0 0.2 4.4E-06 44.0 9.2 93 22-138 124-218 (251)
310 KOG1001 Helicase-like transcri 95.0 0.029 6.2E-07 59.9 4.9 43 178-221 455-499 (674)
311 COG5194 APC11 Component of SCF 95.0 0.02 4.3E-07 42.1 2.5 31 193-223 52-82 (88)
312 COG4976 Predicted methyltransf 95.0 0.025 5.3E-07 51.1 3.5 62 30-114 3-64 (287)
313 KOG3039 Uncharacterized conser 95.0 0.02 4.4E-07 51.6 3.0 48 175-222 219-270 (303)
314 smart00744 RINGv The RING-vari 94.9 0.019 4E-07 39.0 2.1 40 179-218 1-49 (49)
315 KOG2396 HAT (Half-A-TPR) repea 94.8 0.099 2.1E-06 52.5 7.6 94 39-155 88-182 (568)
316 KOG4507 Uncharacterized conser 94.7 0.085 1.8E-06 53.9 6.9 99 26-147 216-317 (886)
317 KOG1308 Hsp70-interacting prot 94.7 0.031 6.8E-07 53.4 3.6 71 18-111 144-214 (377)
318 KOG1493 Anaphase-promoting com 94.7 0.0083 1.8E-07 43.6 -0.2 44 179-222 22-81 (84)
319 PF11793 FANCL_C: FANCL C-term 94.6 0.0065 1.4E-07 44.8 -0.9 47 177-223 2-67 (70)
320 KOG3081 Vesicle coat complex C 94.4 0.4 8.6E-06 44.6 9.9 92 36-150 187-279 (299)
321 PF14561 TPR_20: Tetratricopep 94.4 0.094 2E-06 40.8 5.1 67 41-130 7-75 (90)
322 PF14570 zf-RING_4: RING/Ubox 94.4 0.03 6.5E-07 37.5 2.0 41 180-220 1-46 (48)
323 KOG0827 Predicted E3 ubiquitin 94.2 0.023 4.9E-07 54.7 1.7 45 177-221 4-55 (465)
324 KOG1586 Protein required for f 94.2 0.33 7.1E-06 44.3 8.8 99 30-151 81-192 (288)
325 PF06957 COPI_C: Coatomer (COP 94.2 0.22 4.7E-06 50.0 8.5 121 19-150 201-337 (422)
326 PF04184 ST7: ST7 protein; In 94.2 0.17 3.6E-06 51.1 7.6 105 27-154 264-387 (539)
327 KOG2796 Uncharacterized conser 94.1 0.46 9.9E-06 44.1 9.5 67 24-113 254-320 (366)
328 PF04184 ST7: ST7 protein; In 94.0 0.38 8.3E-06 48.6 9.7 94 30-146 176-292 (539)
329 PRK04841 transcriptional regul 94.0 0.13 2.9E-06 57.8 7.6 98 22-142 452-560 (903)
330 PLN03218 maturation of RBCL 1; 94.0 0.2 4.3E-06 56.8 8.7 43 30-72 587-630 (1060)
331 PLN03218 maturation of RBCL 1; 94.0 0.25 5.5E-06 56.0 9.5 47 96-142 596-643 (1060)
332 PF04641 Rtf2: Rtf2 RING-finge 93.9 0.053 1.1E-06 51.3 3.6 48 174-222 110-161 (260)
333 PLN03081 pentatricopeptide (PP 93.9 0.31 6.8E-06 53.2 10.0 100 21-146 390-494 (697)
334 KOG2930 SCF ubiquitin ligase, 93.8 0.031 6.7E-07 43.3 1.3 29 193-221 79-107 (114)
335 PF05843 Suf: Suppressor of fo 93.7 0.21 4.5E-06 47.9 7.2 111 23-156 36-150 (280)
336 KOG4445 Uncharacterized conser 93.6 0.055 1.2E-06 50.3 2.9 83 131-223 79-187 (368)
337 KOG3039 Uncharacterized conser 93.6 0.037 7.9E-07 50.0 1.7 33 176-208 42-74 (303)
338 PF09613 HrpB1_HrpK: Bacterial 93.4 0.44 9.6E-06 41.0 7.9 112 22-158 10-121 (160)
339 COG5236 Uncharacterized conser 93.4 0.061 1.3E-06 51.0 2.9 49 173-221 57-107 (493)
340 COG2912 Uncharacterized conser 93.4 0.28 6E-06 45.9 7.1 71 30-123 189-259 (269)
341 PF09986 DUF2225: Uncharacteri 93.3 0.15 3.3E-06 46.6 5.3 100 32-147 87-199 (214)
342 PRK04841 transcriptional regul 93.2 0.2 4.4E-06 56.4 7.2 100 22-144 491-604 (903)
343 KOG1586 Protein required for f 93.2 0.55 1.2E-05 42.8 8.4 114 26-162 117-246 (288)
344 PF10602 RPN7: 26S proteasome 93.1 0.61 1.3E-05 41.3 8.7 99 22-143 36-143 (177)
345 PF10300 DUF3808: Protein of u 93.1 0.27 5.9E-06 50.8 7.4 91 35-148 246-340 (468)
346 KOG1585 Protein required for f 93.0 0.7 1.5E-05 42.5 8.8 104 21-147 30-144 (308)
347 KOG1915 Cell cycle control pro 92.9 0.56 1.2E-05 47.0 8.8 109 33-165 377-489 (677)
348 KOG2610 Uncharacterized conser 92.9 0.42 9.1E-06 45.8 7.6 93 24-139 139-235 (491)
349 KOG1814 Predicted E3 ubiquitin 92.9 0.097 2.1E-06 51.1 3.5 45 176-220 183-238 (445)
350 PLN03077 Protein ECB2; Provisi 92.9 0.55 1.2E-05 52.7 10.0 101 22-148 554-659 (857)
351 KOG2053 Mitochondrial inherita 92.8 0.65 1.4E-05 50.0 9.6 101 23-147 44-144 (932)
352 KOG2042 Ubiquitin fusion degra 92.8 0.13 2.8E-06 56.0 4.5 71 174-246 867-938 (943)
353 PF13281 DUF4071: Domain of un 92.7 1.5 3.3E-05 43.4 11.5 116 26-155 183-347 (374)
354 COG2912 Uncharacterized conser 92.6 0.2 4.2E-06 46.9 5.0 57 96-152 198-254 (269)
355 KOG1941 Acetylcholine receptor 92.5 0.56 1.2E-05 45.5 8.0 99 22-143 83-192 (518)
356 PF10579 Rapsyn_N: Rapsyn N-te 92.5 0.51 1.1E-05 35.3 6.1 52 21-72 5-59 (80)
357 KOG3970 Predicted E3 ubiquitin 92.5 0.14 3E-06 45.7 3.6 47 176-222 49-105 (299)
358 PF13374 TPR_10: Tetratricopep 92.4 0.1 2.3E-06 33.5 2.2 30 113-142 2-31 (42)
359 PF05290 Baculo_IE-1: Baculovi 92.4 0.13 2.8E-06 42.1 3.0 49 175-223 78-133 (140)
360 COG5175 MOT2 Transcriptional r 91.7 0.15 3.2E-06 48.3 3.1 43 179-221 16-63 (480)
361 KOG3364 Membrane protein invol 91.7 0.88 1.9E-05 37.9 7.1 64 36-122 49-114 (149)
362 PF13281 DUF4071: Domain of un 91.5 1 2.2E-05 44.7 8.7 99 25-146 144-259 (374)
363 COG5191 Uncharacterized conser 91.5 0.24 5.1E-06 47.0 4.1 90 44-156 95-185 (435)
364 PF07079 DUF1347: Protein of u 91.4 2.4 5.2E-05 42.5 11.1 137 22-162 379-545 (549)
365 PF02259 FAT: FAT domain; Int 91.4 1.2 2.6E-05 43.9 9.5 114 22-145 184-341 (352)
366 PF10367 Vps39_2: Vacuolar sor 91.3 0.33 7.1E-06 39.0 4.5 32 174-205 75-108 (109)
367 COG5220 TFB3 Cdk activating ki 91.3 0.07 1.5E-06 48.0 0.5 46 176-221 9-63 (314)
368 KOG0530 Protein farnesyltransf 91.3 1.4 3.1E-05 40.9 8.8 113 8-144 27-144 (318)
369 KOG1070 rRNA processing protei 90.9 0.75 1.6E-05 51.9 7.8 105 31-158 1539-1645(1710)
370 PF10516 SHNi-TPR: SHNi-TPR; 90.9 0.17 3.7E-06 32.2 1.8 29 114-142 2-30 (38)
371 PF13374 TPR_10: Tetratricopep 90.9 0.34 7.4E-06 30.9 3.4 30 22-51 2-31 (42)
372 PF07720 TPR_3: Tetratricopept 90.5 0.31 6.8E-06 30.6 2.8 34 113-146 1-36 (36)
373 PF07721 TPR_4: Tetratricopept 90.4 0.35 7.7E-06 27.8 2.8 26 113-138 1-26 (26)
374 PF03854 zf-P11: P-11 zinc fin 90.2 0.15 3.3E-06 33.6 1.1 42 179-222 4-46 (50)
375 PF02259 FAT: FAT domain; Int 90.2 2.3 4.9E-05 41.8 10.2 121 20-163 144-308 (352)
376 COG3914 Spy Predicted O-linked 90.0 1.4 3E-05 45.5 8.3 106 29-156 74-185 (620)
377 TIGR02561 HrpB1_HrpK type III 89.9 2.5 5.4E-05 35.9 8.4 86 22-130 10-95 (153)
378 PHA02537 M terminase endonucle 89.5 1.7 3.6E-05 40.0 7.8 122 32-163 93-227 (230)
379 PRK13184 pknD serine/threonine 89.5 1.5 3.3E-05 48.8 8.9 111 28-155 481-594 (932)
380 KOG4362 Transcriptional regula 89.1 0.18 3.9E-06 53.0 1.4 46 176-221 20-68 (684)
381 KOG0298 DEAD box-containing he 88.7 0.24 5.1E-06 55.3 1.9 47 174-220 1150-1197(1394)
382 KOG2471 TPR repeat-containing 88.4 0.41 8.9E-06 48.1 3.2 81 22-125 283-381 (696)
383 COG3629 DnrI DNA-binding trans 88.1 1.3 2.9E-05 42.0 6.3 91 29-142 110-216 (280)
384 KOG0292 Vesicle coat complex C 87.8 5.6 0.00012 43.2 11.1 191 19-219 988-1188(1202)
385 PF05883 Baculo_RING: Baculovi 87.6 0.41 8.9E-06 39.6 2.3 45 177-221 26-79 (134)
386 KOG2932 E3 ubiquitin ligase in 87.6 0.23 4.9E-06 46.6 0.9 41 179-221 92-133 (389)
387 COG3898 Uncharacterized membra 87.5 2 4.3E-05 42.3 7.1 93 25-141 123-216 (531)
388 KOG3617 WD40 and TPR repeat-co 87.5 1.8 3.9E-05 46.4 7.3 97 23-142 859-996 (1416)
389 KOG1585 Protein required for f 87.3 7.3 0.00016 36.1 10.1 100 22-144 110-221 (308)
390 cd02682 MIT_AAA_Arch MIT: doma 86.8 7.7 0.00017 28.9 8.4 30 21-50 5-34 (75)
391 KOG3002 Zn finger protein [Gen 86.7 0.39 8.5E-06 46.0 1.9 60 173-240 44-104 (299)
392 PF10516 SHNi-TPR: SHNi-TPR; 86.6 0.88 1.9E-05 29.0 2.9 30 23-52 2-31 (38)
393 PF12862 Apc5: Anaphase-promot 86.1 1 2.2E-05 35.2 3.8 52 96-147 15-75 (94)
394 KOG2817 Predicted E3 ubiquitin 86.1 0.53 1.2E-05 46.0 2.5 47 175-221 332-384 (394)
395 COG4941 Predicted RNA polymera 85.8 3.9 8.5E-05 39.4 8.0 97 37-157 311-409 (415)
396 PF14863 Alkyl_sulf_dimr: Alky 84.4 1.4 3.1E-05 37.3 4.1 51 22-72 70-120 (141)
397 KOG2034 Vacuolar sorting prote 84.2 4.2 9.2E-05 44.1 8.2 35 174-208 814-850 (911)
398 COG3914 Spy Predicted O-linked 84.1 4.3 9.3E-05 42.1 7.9 97 34-153 42-142 (620)
399 PF10373 EST1_DNA_bind: Est1 D 84.0 2 4.3E-05 40.8 5.5 62 98-159 1-62 (278)
400 PF12862 Apc5: Anaphase-promot 83.5 2.1 4.4E-05 33.5 4.4 58 30-110 6-72 (94)
401 PHA03096 p28-like protein; Pro 83.4 0.55 1.2E-05 44.7 1.3 42 178-219 179-231 (284)
402 KOG0546 HSP90 co-chaperone CPR 83.3 1.1 2.4E-05 43.4 3.3 82 26-130 279-360 (372)
403 PF02891 zf-MIZ: MIZ/SP-RING z 83.1 0.67 1.5E-05 31.6 1.3 42 178-220 3-50 (50)
404 KOG1812 Predicted E3 ubiquitin 83.1 3.9 8.6E-05 41.0 7.3 34 176-209 145-182 (384)
405 PF09613 HrpB1_HrpK: Bacterial 83.1 4.4 9.6E-05 35.0 6.5 62 96-157 27-88 (160)
406 PF10373 EST1_DNA_bind: Est1 D 83.0 1.9 4.2E-05 40.8 5.0 62 41-125 1-62 (278)
407 PF07720 TPR_3: Tetratricopept 82.9 2.8 6E-05 26.3 3.9 33 23-55 2-36 (36)
408 COG5191 Uncharacterized conser 82.8 3.6 7.8E-05 39.3 6.3 76 20-118 105-181 (435)
409 PF07079 DUF1347: Protein of u 82.8 6 0.00013 39.8 8.1 78 22-124 462-539 (549)
410 PRK15180 Vi polysaccharide bio 82.6 8.9 0.00019 38.9 9.2 98 21-141 288-385 (831)
411 PF10579 Rapsyn_N: Rapsyn N-te 82.5 5.5 0.00012 29.9 6.0 45 96-140 23-70 (80)
412 PF08631 SPO22: Meiosis protei 82.2 16 0.00034 34.9 10.9 124 17-160 30-169 (278)
413 KOG2979 Protein involved in DN 81.7 1.1 2.3E-05 41.4 2.4 43 176-218 175-220 (262)
414 COG3629 DnrI DNA-binding trans 81.2 3.5 7.6E-05 39.2 5.8 63 22-107 153-215 (280)
415 PF08424 NRDE-2: NRDE-2, neces 80.7 6.2 0.00013 38.6 7.6 100 42-152 5-104 (321)
416 PF14863 Alkyl_sulf_dimr: Alky 80.1 4 8.7E-05 34.6 5.2 82 83-165 40-122 (141)
417 KOG2396 HAT (Half-A-TPR) repea 80.1 6 0.00013 40.3 7.1 70 25-117 108-178 (568)
418 TIGR03504 FimV_Cterm FimV C-te 79.7 2.2 4.7E-05 28.2 2.7 26 116-141 2-27 (44)
419 KOG1070 rRNA processing protei 79.7 4.8 0.0001 45.9 6.9 101 21-144 1563-1665(1710)
420 PF04212 MIT: MIT (microtubule 79.6 3.6 7.9E-05 29.9 4.3 32 20-51 3-34 (69)
421 COG3898 Uncharacterized membra 79.4 8.2 0.00018 38.1 7.6 52 96-147 246-297 (531)
422 PF08746 zf-RING-like: RING-li 79.1 2.4 5.3E-05 27.8 2.8 38 180-217 1-43 (43)
423 KOG3899 Uncharacterized conser 78.9 1 2.3E-05 41.9 1.4 27 195-221 325-364 (381)
424 KOG0530 Protein farnesyltransf 78.8 5.6 0.00012 37.2 6.0 91 36-149 92-183 (318)
425 KOG2047 mRNA splicing factor [ 78.2 38 0.00082 35.9 12.2 118 22-163 425-561 (835)
426 COG2976 Uncharacterized protei 78.2 22 0.00048 31.8 9.3 45 96-140 106-153 (207)
427 KOG3799 Rab3 effector RIM1 and 77.4 1.8 4E-05 35.4 2.2 43 171-223 59-101 (169)
428 cd02681 MIT_calpain7_1 MIT: do 77.2 3.7 8E-05 30.7 3.7 32 20-51 4-35 (76)
429 KOG1550 Extracellular protein 76.4 11 0.00023 40.0 8.3 113 22-156 244-369 (552)
430 PF07721 TPR_4: Tetratricopept 76.0 3.9 8.5E-05 23.3 2.8 24 24-47 3-26 (26)
431 PF04910 Tcf25: Transcriptiona 75.3 8 0.00017 38.5 6.6 101 22-145 103-225 (360)
432 cd02680 MIT_calpain7_2 MIT: do 75.2 4.7 0.0001 30.1 3.7 32 20-51 4-35 (75)
433 cd02682 MIT_AAA_Arch MIT: doma 75.1 7.3 0.00016 29.0 4.7 57 96-160 4-60 (75)
434 KOG0529 Protein geranylgeranyl 74.9 30 0.00066 34.5 10.2 118 30-158 36-156 (421)
435 PF13240 zinc_ribbon_2: zinc-r 74.8 0.59 1.3E-05 26.1 -0.9 22 199-220 1-22 (23)
436 KOG0686 COP9 signalosome, subu 74.7 12 0.00027 37.1 7.4 96 22-140 150-256 (466)
437 PF06906 DUF1272: Protein of u 74.7 2.6 5.6E-05 29.0 2.0 29 194-224 26-54 (57)
438 KOG4718 Non-SMC (structural ma 74.0 2.5 5.5E-05 37.6 2.4 60 151-219 164-224 (235)
439 COG5091 SGT1 Suppressor of G2 73.8 15 0.00033 34.3 7.4 115 30-162 3-127 (368)
440 PF10272 Tmpp129: Putative tra 73.8 1.9 4.2E-05 42.3 1.8 27 195-221 311-350 (358)
441 KOG1100 Predicted E3 ubiquitin 73.7 1.4 3E-05 40.0 0.7 38 180-221 161-199 (207)
442 cd02683 MIT_1 MIT: domain cont 73.5 36 0.00077 25.5 9.4 31 20-50 4-34 (77)
443 COG4649 Uncharacterized protei 73.5 38 0.00083 29.8 9.3 96 22-141 94-195 (221)
444 PF08424 NRDE-2: NRDE-2, neces 73.3 8.9 0.00019 37.5 6.4 83 36-141 45-130 (321)
445 KOG4814 Uncharacterized conser 73.2 10 0.00022 39.9 6.7 72 57-151 355-432 (872)
446 COG4455 ImpE Protein of avirul 73.2 24 0.00053 32.2 8.3 63 29-114 8-70 (273)
447 KOG2047 mRNA splicing factor [ 72.2 23 0.0005 37.4 9.0 110 28-160 483-599 (835)
448 KOG2066 Vacuolar assembly/sort 71.8 5.4 0.00012 42.7 4.6 42 176-218 783-831 (846)
449 KOG1550 Extracellular protein 71.4 16 0.00035 38.7 8.2 91 26-143 292-394 (552)
450 COG0790 FOG: TPR repeat, SEL1 71.3 14 0.0003 35.3 7.2 104 23-144 110-222 (292)
451 PF10255 Paf67: RNA polymerase 71.2 4.6 0.0001 40.5 3.8 46 96-141 139-192 (404)
452 smart00745 MIT Microtubule Int 71.2 7.4 0.00016 28.9 4.2 33 19-51 5-37 (77)
453 COG3947 Response regulator con 70.9 5.6 0.00012 37.7 4.0 41 96-136 296-336 (361)
454 PHA02825 LAP/PHD finger-like p 70.4 4.7 0.0001 34.5 3.1 46 176-222 7-59 (162)
455 TIGR02561 HrpB1_HrpK type III 70.3 14 0.00031 31.5 5.9 64 96-159 27-90 (153)
456 cd02678 MIT_VPS4 MIT: domain c 69.8 8.3 0.00018 28.6 4.1 32 20-51 4-35 (75)
457 PF04781 DUF627: Protein of un 69.3 22 0.00047 28.7 6.5 65 62-149 2-80 (111)
458 COG4455 ImpE Protein of avirul 69.2 15 0.00033 33.4 6.2 53 96-148 18-70 (273)
459 PF07191 zinc-ribbons_6: zinc- 68.7 0.65 1.4E-05 33.8 -2.0 40 178-222 2-41 (70)
460 cd02684 MIT_2 MIT: domain cont 68.2 9.3 0.0002 28.5 4.0 32 20-51 4-35 (75)
461 PF11207 DUF2989: Protein of u 68.0 7.5 0.00016 34.9 4.0 32 112-144 140-171 (203)
462 COG3813 Uncharacterized protei 67.8 3.5 7.6E-05 29.8 1.6 31 192-224 24-54 (84)
463 PRK15180 Vi polysaccharide bio 67.6 64 0.0014 33.0 10.7 108 35-155 711-818 (831)
464 KOG1940 Zn-finger protein [Gen 67.4 3.1 6.7E-05 39.3 1.6 44 176-219 157-204 (276)
465 PF09986 DUF2225: Uncharacteri 66.5 12 0.00025 34.3 5.1 69 22-113 118-199 (214)
466 cd02679 MIT_spastin MIT: domai 66.3 8.1 0.00018 29.1 3.4 34 18-51 4-37 (79)
467 cd02656 MIT MIT: domain contai 65.7 11 0.00025 27.8 4.1 32 20-51 4-35 (75)
468 PF04910 Tcf25: Transcriptiona 65.4 15 0.00034 36.5 6.2 77 49-148 33-139 (360)
469 KOG1258 mRNA processing protei 65.1 44 0.00095 35.0 9.3 129 12-163 287-416 (577)
470 PF07219 HemY_N: HemY protein 65.0 10 0.00022 30.4 4.0 51 18-68 55-105 (108)
471 COG3118 Thioredoxin domain-con 64.1 19 0.00041 34.4 6.1 44 96-139 151-194 (304)
472 KOG0529 Protein geranylgeranyl 63.4 24 0.00051 35.2 6.8 102 34-156 87-192 (421)
473 KOG1310 WD40 repeat protein [G 62.8 13 0.00029 38.1 5.1 67 23-112 409-478 (758)
474 PHA02862 5L protein; Provision 62.6 6 0.00013 33.1 2.2 44 179-223 4-54 (156)
475 KOG3617 WD40 and TPR repeat-co 62.4 21 0.00046 38.8 6.6 76 31-139 809-884 (1416)
476 PRK04023 DNA polymerase II lar 62.4 4.1 8.8E-05 44.9 1.6 61 175-240 624-689 (1121)
477 smart00386 HAT HAT (Half-A-TPR 61.7 5.6 0.00012 23.3 1.5 26 36-61 1-26 (33)
478 PF09670 Cas_Cas02710: CRISPR- 61.3 43 0.00093 33.6 8.6 49 23-71 132-182 (379)
479 PF14569 zf-UDP: Zinc-binding 61.3 7.7 0.00017 28.7 2.3 44 178-221 10-61 (80)
480 KOG2041 WD40 repeat protein [G 61.2 53 0.0011 35.2 9.1 86 18-138 792-877 (1189)
481 KOG2561 Adaptor protein NUB1, 61.0 23 0.00049 35.6 6.2 108 21-141 162-295 (568)
482 KOG3113 Uncharacterized conser 60.6 16 0.00034 33.7 4.7 47 175-223 109-159 (293)
483 cd02677 MIT_SNX15 MIT: domain 59.6 17 0.00036 27.1 4.0 32 20-51 4-35 (75)
484 PF12968 DUF3856: Domain of Un 59.6 24 0.00053 28.9 5.1 46 96-141 26-83 (144)
485 KOG0825 PHD Zn-finger protein 59.5 4.9 0.00011 42.8 1.5 46 176-221 95-153 (1134)
486 KOG2113 Predicted RNA binding 59.4 8.1 0.00018 36.6 2.7 46 174-221 340-386 (394)
487 KOG3268 Predicted E3 ubiquitin 58.7 5.8 0.00013 34.3 1.5 46 177-222 165-228 (234)
488 PF13226 DUF4034: Domain of un 58.5 1.3E+02 0.0028 28.7 10.7 118 28-162 6-148 (277)
489 KOG1428 Inhibitor of type V ad 58.4 7.7 0.00017 44.4 2.7 59 174-240 3483-3554(3738)
490 PF11846 DUF3366: Domain of un 57.8 17 0.00038 32.4 4.7 49 96-145 128-176 (193)
491 PF06844 DUF1244: Protein of u 57.4 5.6 0.00012 28.4 1.0 12 198-209 11-22 (68)
492 PF12854 PPR_1: PPR repeat 57.4 15 0.00033 22.4 2.9 27 112-138 6-32 (34)
493 PF08631 SPO22: Meiosis protei 57.4 22 0.00048 33.9 5.6 96 32-150 3-124 (278)
494 COG3947 Response regulator con 57.4 17 0.00036 34.7 4.4 47 26-72 283-329 (361)
495 KOG4563 Cell cycle-regulated h 57.0 19 0.0004 35.3 4.8 56 17-72 36-99 (400)
496 KOG2300 Uncharacterized conser 56.9 1.2E+02 0.0026 31.2 10.4 132 12-166 36-203 (629)
497 PRK13184 pknD serine/threonine 56.8 63 0.0014 36.5 9.5 102 25-150 522-628 (932)
498 PF10255 Paf67: RNA polymerase 56.2 48 0.001 33.4 7.7 99 23-145 123-231 (404)
499 KOG1815 Predicted E3 ubiquitin 55.2 6.9 0.00015 40.2 1.8 36 174-209 67-103 (444)
500 COG5109 Uncharacterized conser 53.9 9 0.0002 36.4 2.1 47 174-220 333-385 (396)
No 1
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.95 E-value=3.9e-27 Score=251.74 Aligned_cols=192 Identities=17% Similarity=0.241 Sum_probs=162.3
Q ss_pred Cccceeee--ccCCCCccCcccCchHHHHHHHHHHhCCceeEEEEeCC------CCCccccccceEEEEEeeecCCceEE
Q 012162 263 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDP------TTGSVADFACEVEITECEPLPDGRFV 334 (469)
Q Consensus 263 ~lPl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~G~~~~I~~~~~~~dg~~~ 334 (469)
.+|+||++ |+|||+.+||+||+++|+.|++.++.+++.||++++.. ...++|++||+|+|.++.+++||++.
T Consensus 10 ~LPLfPLr~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~~~~gvv~~k~~~~~~p~~~dLy~VGtla~I~~~~~l~DG~~~ 89 (784)
T PRK10787 10 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVK 89 (784)
T ss_pred eEEEEECCCceeCCCceeeeecCCHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcccccCccEEEEEEEeeECCCCeEE
Confidence 59999997 99999999999999999999999999999999999842 22478999999999999999999999
Q ss_pred EEEEeccceEEeeeeccCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhcC
Q 012162 335 LEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEVM 414 (469)
Q Consensus 335 v~~~g~~R~~i~~~~~~~~~~~a~ve~~~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (469)
|.++|.+||+|.++.+.+||+.|+|+++++...+ ..+..++.+.+.+.+.++.......+. +... .
T Consensus 90 Ilv~Gl~RfrI~~~~~~~py~~A~Ve~l~~~~~~----~~e~~al~~~ll~~~~~~~~l~~~~~~-------e~~~---~ 155 (784)
T PRK10787 90 VLVEGLQRARISALSDNGEHFSAKAEYLESPTID----EREQEVLVRTAISQFEGYIKLNKKIPP-------EVLT---S 155 (784)
T ss_pred EEEEEEEEEEEEEEEcCCCCEEEEEEEecCCCCC----chHHHHHHHHHHHHHHHHHHhcccCCH-------HHHh---h
Confidence 9999999999999988999999999999874321 134456677777777777765543332 1111 1
Q ss_pred CCCCCCcchhHHHHHhcCCCChhHhhhhccCCCHHHHHHHHHHHHHhhhccccC
Q 012162 415 MPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQGCRL 468 (469)
Q Consensus 415 ~~~~~~p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eRl~~l~~~l~~~~~~~~~ 468 (469)
+...+||++++|++|++++++.++||+|||+.|+.+|+++++.+|.++++.-.+
T Consensus 156 ~~~~ddp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l 209 (784)
T PRK10787 156 LNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQV 209 (784)
T ss_pred hhccccHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999998876543
No 2
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=99.94 E-value=1.5e-26 Score=212.28 Aligned_cols=189 Identities=28% Similarity=0.515 Sum_probs=131.8
Q ss_pred ccceeee--ccCCCCccCcccCchHHHHHHHHHHhCCce-eEEEEe---C-----CCCCccccccceEEEEEeeecCCce
Q 012162 264 MPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHR-MGMVII---D-----PTTGSVADFACEVEITECEPLPDGR 332 (469)
Q Consensus 264 lPl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~~~~-~~l~~~---~-----~~~~~~~~~G~~~~I~~~~~~~dg~ 332 (469)
+|+||++ |+|||+.+|+++++++++.|+++++.+++. ||+++. . +...++|.+||+|+|.++...+||+
T Consensus 2 lPv~pl~~~vlfPg~~~~i~i~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~~I~~~~~~~dg~ 81 (205)
T PF02190_consen 2 LPVFPLRNQVLFPGQTLPIHIFEPRYIALLKRALDNNNPYFGIFLVKSNKDDSDEPSIDDLYSVGTLARIIRVEELPDGT 81 (205)
T ss_dssp EEEEEESSS---TTBEEEEEE-SHHHHHHHHHHHTTTSE-EEEEEE-EBSSTSSSS-GGGB-SEEEEEEEEEEEESTTS-
T ss_pred EEEEEeCCcccCCCeeEEEEECCHHHHHHHHHHHhcCCCceeEEeecccCCcccCCcccccccceEEEEEEEEEecCCCC
Confidence 7999996 999999999999999999999999998775 888877 1 2345789999999999999999999
Q ss_pred EEEEEEeccceEEeee---eccCCeeEEEEEEecCC-CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 012162 333 FVLEIESRRRFRILRS---WDQDGYRVAEIEWVQDI-HPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKL 408 (469)
Q Consensus 333 ~~v~~~g~~R~~i~~~---~~~~~~~~a~ve~~~d~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (469)
+.|.++|.+||+|.++ ...+||++|+|++++|. +....+...++.++...+.+.+.++......... . .
T Consensus 82 ~~v~~~g~~R~ki~~~~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~- 154 (205)
T PF02190_consen 82 YKVLVQGLQRFKILKINNETQEDPYLVAEVEPLEDVEPPESDELDEEIKALLRELIKKIKEAYENLKELLP---W---D- 154 (205)
T ss_dssp EEEEEEEEEEEEEEEEEE--ECSSCEEEEEEEE-----GCGHHHHHHHHHHHHHHHHHHH---HHHCCC-C---H---H-
T ss_pred EEEEEEEEEEEEEEEEecccccCCceEEEEEEecccCccchhhhHHHHHHHHHHHHHHHHHHHHhhhcccc---h---h-
Confidence 9999999999999999 56899999999999873 3322222334444444444443321111111100 0 0
Q ss_pred hhhhcCCCCCCCcchhHHHHHhcCCCChhHhhhhccCCCHHHHHHHHHHHHHh
Q 012162 409 LNVEVMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRA 461 (469)
Q Consensus 409 ~~~~~~~~~~~~p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eRl~~l~~~l~~ 461 (469)
....+...++|..|+||+|++++++.++||+||++.|+.+|++.++++|++
T Consensus 155 --~~~~~~~~~~~~~l~~~~~~~l~~~~~ek~~lL~~~~~~~Rl~~l~~~L~~ 205 (205)
T PF02190_consen 155 --LLLKINNPDNPPELADFVASLLPLSPEEKQELLETDDLKERLKLLIELLKK 205 (205)
T ss_dssp --HHHHTTTHHHHHHHHHHHHHHS---HHHHHHHHC--SHHHHHHHHHHHHH-
T ss_pred --hhhhhhccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 011134567788899999999999999999999999999999999999975
No 3
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=99.93 E-value=3.3e-25 Score=194.68 Aligned_cols=188 Identities=29% Similarity=0.453 Sum_probs=148.0
Q ss_pred CCccceeee--ccCCCCccCcccCchHHHHHHHHHHhCCceeEEEEeCCC---CC----ccccccceEEEEEeeecCCce
Q 012162 262 DLMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDPT---TG----SVADFACEVEITECEPLPDGR 332 (469)
Q Consensus 262 ~~lPl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~----~~~~~G~~~~I~~~~~~~dg~ 332 (469)
..+|+||++ |+|||..+|++||++||..|++.|+++++.||++..++. .+ .+..|||+++|+++...+||+
T Consensus 10 ~~LplFPL~~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~~r~fGvv~i~~~~~~~~~~~~~ls~VGcla~I~~~~~~~DGr 89 (221)
T COG2802 10 LELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGREVGGGLPPELSDVGCLARITEFEELGDGR 89 (221)
T ss_pred ceeeccccccccccCCCCCchhhccHHHHHHHHHHHhcCCceeEEEecccccccCCCcchhhccceeEEEeEeeEcCCCc
Confidence 459999995 999999999999999999999999999999999999762 22 678999999999999999999
Q ss_pred EEEEEEeccceEEeeeec-cCCeeEEEEEEecCCCCCCcchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 012162 333 FVLEIESRRRFRILRSWD-QDGYRVAEIEWVQDIHPEGVEDRADLQDLTN-NAAEYARLWLRREKESARQDRRRLEKLLN 410 (469)
Q Consensus 333 ~~v~~~g~~R~~i~~~~~-~~~~~~a~ve~~~d~~~~~~~~~~~l~~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (469)
+.|.++|.+||||.++.. .+||..+++++++|.+..... ..+++.... .+...++.|.+...-. .+|..
T Consensus 90 ~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~~~~~~~-a~evdr~~~~~l~~~~r~~~~~~~l~--------~d~~~ 160 (221)
T COG2802 90 YLILVRGGQRFRVLEELADDDPYRRARVPFWPDLPSDPDG-AEEVDRRLDALLMRAARAYLQRLELL--------ADWES 160 (221)
T ss_pred EEEEEEeEEEEEEEEEecccCcceeeccccCCCCccCcch-HHHHHHHHHHHHHHHHHHHhhhcchh--------hhhcc
Confidence 999999999999999985 899999999999986543221 122222111 1222233333221110 12222
Q ss_pred hhcCCCCCCCcchhHHHHHhcCCCChhHhhhhccCCCHHHHHHHHHHHHHhhh
Q 012162 411 VEVMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEE 463 (469)
Q Consensus 411 ~~~~~~~~~~p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eRl~~l~~~l~~~~ 463 (469)
-...++.++++.++..+|+++.+||.+|+..|+..|+..++.+++.-.
T Consensus 161 -----~~~~~~~~l~n~L~~llp~~~~~k~~ll~a~d~~~r~~~L~~~~e~l~ 208 (221)
T COG2802 161 -----YERASNADLANRLYMLLPFDPAEKQALLEAPDLPTRAERLIRLLEQLL 208 (221)
T ss_pred -----cccccHHHHHHHHHHhCCCChhHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 235778999999999999999999999999999999999999987644
No 4
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.93 E-value=2.2e-25 Score=240.81 Aligned_cols=192 Identities=19% Similarity=0.304 Sum_probs=159.5
Q ss_pred cceeee--ccCCCCccCcccCchHHHHHHHHHHhCCceeE-EEEeCC------CCCccccccceEEEEEeeecCC---ce
Q 012162 265 PLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMG-MVIIDP------TTGSVADFACEVEITECEPLPD---GR 332 (469)
Q Consensus 265 Pl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~~~~~~-l~~~~~------~~~~~~~~G~~~~I~~~~~~~d---g~ 332 (469)
|+||++ |+|||+.+||+||+++|+.|+++++.+++.|+ ++++.. ...++|.+||+|+|+++.+++| |+
T Consensus 1 Pl~PLr~~VLfPg~~lpL~Ife~r~i~mV~~al~~~~~~~~vv~~k~~~~~~p~~~~ly~VGt~a~I~~~~~~~d~~dG~ 80 (775)
T TIGR00763 1 PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRLKQPYLGLFLQKDDDNEEPEEDDIYSVGVVAQILEMLPLPSSGTAT 80 (775)
T ss_pred CeEcCCCCccCCCcceeEecCCHHHHHHHHHHHhcCCcEEEEEEecCcccCCCCcccccCCceEEEEEEeccCCCCCCCe
Confidence 899996 99999999999999999999999999888887 666632 2347999999999999999555 99
Q ss_pred EEEEEEeccceEEeeeeccCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHhhh
Q 012162 333 FVLEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREK--ESARQDRRRLEKLLN 410 (469)
Q Consensus 333 ~~v~~~g~~R~~i~~~~~~~~~~~a~ve~~~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 410 (469)
+.|.++|.+||+|.++.+++||+.|+|+++++.+.. .+..++.++.+.+.+.+.++..... ..+.. .+..
T Consensus 81 ~~Ilv~G~~R~rI~~~~~~~p~~~A~V~~l~~~~~~--~~~~e~~al~~~l~~~~~el~~l~~l~~~~~e------~~~~ 152 (775)
T TIGR00763 81 YKVVVEGLRRIRIKELSDKGGYLVVRVDNLKEEPFD--KDDEEIKALTREIKETFRELISLSKLFREQPA------LLSA 152 (775)
T ss_pred EEEEEEEEEEEEEEEEecCCCcEEEEEEEecCcCCC--CCcHHHHHHHHHHHHHHHHHHHhCccccCCHH------HHHH
Confidence 999999999999999999999999999999875321 1224577888888888888876554 22220 1111
Q ss_pred hhcCCCCCCCcchhHHHHHhcCCCC-hhHhhhhccCCCHHHHHHHHHHHHHhhhccccC
Q 012162 411 VEVMMPPSQDPERFSFWLATLSDRR-PSERLELLRIRDTRERIRRGLIFLRAEEQGCRL 468 (469)
Q Consensus 411 ~~~~~~~~~~p~~l~~~ia~~l~l~-~~~kq~lLe~~~~~eRl~~l~~~l~~~~~~~~~ 468 (469)
+...++|++++|++|++|+++ .++||+|||+.|+.+|+++++.+|.++++.-.+
T Consensus 153 ----~~~~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l 207 (775)
T TIGR00763 153 ----LEDIDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKELELLKL 207 (775)
T ss_pred ----HhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344689999999999999999 999999999999999999999999998865443
No 5
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.6e-24 Score=217.20 Aligned_cols=193 Identities=21% Similarity=0.291 Sum_probs=168.3
Q ss_pred Cccceeee--ccCCCCccCcccCchHHHHHHHHHHhCC-ceeEEEEeC------CCCCccccccceEEEEEeeecCCceE
Q 012162 263 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGN-HRMGMVIID------PTTGSVADFACEVEITECEPLPDGRF 333 (469)
Q Consensus 263 ~lPl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~~-~~~~l~~~~------~~~~~~~~~G~~~~I~~~~~~~dg~~ 333 (469)
.+|++|++ |+||++.+|+.++++++..+++.+|.++ +.+++++|. |..+++|.+||+|+|.++.++|||++
T Consensus 9 ~lpvlplr~~vvfP~m~~pl~vgr~~si~ale~a~~~~~k~i~l~~qk~~~~d~p~~~dly~vGt~a~I~q~~~lpdg~~ 88 (782)
T COG0466 9 ELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTEDDLYEVGTLAKILQILKLPDGTV 88 (782)
T ss_pred cceeEEecCceeCCCceeeEEcCChhHHHHHHHHHhCCCCEEEEEEecccccCCCChhhhhhcchheeeeeeeeCCCCcE
Confidence 58999998 9999999999999999999999999986 889999984 23358999999999999999999999
Q ss_pred EEEEEeccceEEeeeeccCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 012162 334 VLEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEV 413 (469)
Q Consensus 334 ~v~~~g~~R~~i~~~~~~~~~~~a~ve~~~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (469)
+|+++|.+|++|.++...++++.|.++.+++.+.++ ..+++++.+.+...+.+++......+. +.+..
T Consensus 89 kvlveg~~R~~I~~~~~~~~~~~a~~~~i~~~~~~~---~~~~~al~~~i~~~~~~~~~l~~~~~~-------e~l~~-- 156 (782)
T COG0466 89 KVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDE---EREIEALVRSILSEFEEYAKLNKKIPP-------EELQS-- 156 (782)
T ss_pred EEEEEeeeeEEEEeeccCCCceEEEEEecCCCcccc---hhHHHHHHHHHHHHHHHHHHhccCCCH-------HHHHH--
Confidence 999999999999999999999999999998854331 356789999999999999988765443 22222
Q ss_pred CCCCCCCcchhHHHHHhcCCCChhHhhhhccCCCHHHHHHHHHHHHHhhhccccC
Q 012162 414 MMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQGCRL 468 (469)
Q Consensus 414 ~~~~~~~p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eRl~~l~~~l~~~~~~~~~ 468 (469)
+...++|+.++|.+|++++++.+++|++||+.|+.+||+.++.+|.+++..-++
T Consensus 157 -~~~i~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ 210 (782)
T COG0466 157 -LNSIDDPGKLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKEIDLLQL 210 (782)
T ss_pred -HhcccchHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 235789999999999999999999999999999999999999999998865443
No 6
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.4e-24 Score=209.17 Aligned_cols=288 Identities=31% Similarity=0.575 Sum_probs=214.1
Q ss_pred CCCCCCCccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCC---CcccCcccHHHHHHHhchH
Q 012162 168 IHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITP---RTCAVSVTLNSIIQKNFPE 244 (469)
Q Consensus 168 ~~~~~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~---~~~~~~~~l~~~~~~~~~~ 244 (469)
..+..+...++.|.+|...+..||++||||+||..||.+.++....||.||.++...+ ....+|..+..++.+|+++
T Consensus 75 ~s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 75 LSGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred hccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344455789999999999999999999999999999999988889999999884211 1122366677888888888
Q ss_pred HHHHhhhhccc---cccccCCCccceeee-ccCCCCccCcccCchHHHHHHHHHHhC-CceeEEEEeCCCCCc--ccccc
Q 012162 245 EYAERKSEHDS---LINFGVDLMPLFVMD-VVIPCQRFPLHIFEPRYRLMVRRIMEG-NHRMGMVIIDPTTGS--VADFA 317 (469)
Q Consensus 245 ~~~~~~~~~~~---~~~~~~~~lPl~~l~-v~fP~~~~~l~i~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~--~~~~G 317 (469)
....+...++. .-.......|+|++. +.||....|+++|+++|..|++++++. +.+|++++.+...+. .+.+|
T Consensus 155 ~~~~s~~~~~~~~~e~~~~e~~~p~f~v~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~~rf~i~~sd~~~~~~~~~e~g 234 (398)
T KOG4159|consen 155 SSSFSPKASEKSKEEESSRECESPLFPVCTLAFPEVPCPLQVFEPRYRLMIRRLLETGDKRFGICLSDSSKGSGQAAEIG 234 (398)
T ss_pred hhccchhhhhhhccccccccccCCcccccccccccccCcHHHccchHHHHHHHHHhhcceeeeeecccccCCcchhhhcc
Confidence 77633222211 111233458999876 899999999999999999999999986 679999998766554 78999
Q ss_pred ceEEEEEeeecCCceEEEEEEeccceEEeeeeccCCeeEEEEEEecCCC---CCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 012162 318 CEVEITECEPLPDGRFVLEIESRRRFRILRSWDQDGYRVAEIEWVQDIH---PEGVEDRADLQDLTNNAAEYARLWLRRE 394 (469)
Q Consensus 318 ~~~~I~~~~~~~dg~~~v~~~g~~R~~i~~~~~~~~~~~a~ve~~~d~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 394 (469)
|+.+|..+..+.||+..+...|..||++......++|.+|+|++++|.+ ....+..+.+..++..+......|.+..
T Consensus 235 ~i~ei~~v~~l~dgrsv~~~~gk~r~r~~~~~~~d~y~~~~ve~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 314 (398)
T KOG4159|consen 235 CILEIRKVESLGDGRSVVDSIGKSRFRVLLFSQTDGYPVADVEYLEDRPAVKVEGHDEPETLVELMKEVVKKECLWFESV 314 (398)
T ss_pred chhhhcccccccccchhhhhhcCcceeeeeecCCCcceeeeeeeeeCcHHhhhccchhchhHHHHHHHHHHhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999843 1111112223334444444444444433
Q ss_pred HHHHHHhHHHHHHhhhhhcCC-------CCCCCcchhHHHHHhcCCCChhHhhhhccCCCHHHHHHHHHHHHHh
Q 012162 395 KESARQDRRRLEKLLNVEVMM-------PPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRA 461 (469)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~-------~~~~~p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eRl~~l~~~l~~ 461 (469)
...... .+...++.+ ....+-..+++|....++++...+-.++.+.++.+|+.....++..
T Consensus 315 ~~~~~~------~~~~~~~~~p~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~t~ 382 (398)
T KOG4159|consen 315 ADPMKG------RLLVHFGCMPFLEINFECLESGPAWCWWKTALLPSEARLKSEFLAMRSLKNRLTAIDRELTL 382 (398)
T ss_pred chhhhh------hhhhcccccccchhchhhhccchHHHHHHHhcCCcHHHHHHHHHhccchhhhhcccchhhhh
Confidence 222221 111121111 1234677889999999999999999999999999998877766653
No 7
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=9.7e-21 Score=173.67 Aligned_cols=125 Identities=23% Similarity=0.392 Sum_probs=121.5
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
+....++.++.+|+.+++.++|.+|+..|++||+++|+|+.+|.|||.+|.++|.| +
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~-----------------------~ 132 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY-----------------------E 132 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch-----------------------H
Confidence 57788999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhh
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 164 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 164 (469)
.|+++++.||.+||.+.++|-++|.+|..+|+|++|++.|++||+++|+|..+++.++.++.++....
T Consensus 133 ~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 133 DAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888766
No 8
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.4e-17 Score=145.85 Aligned_cols=204 Identities=22% Similarity=0.311 Sum_probs=165.9
Q ss_pred hhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 16 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
+.++..+..+...|+.+|....|..||.+|.+||.++|..+..|.|+|.||+++++|
T Consensus 4 ~~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~----------------------- 60 (284)
T KOG4642|consen 4 PEMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW----------------------- 60 (284)
T ss_pred cccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh-----------------------
Confidence 445666889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC-----CchhHHHHHHHHH------------
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF-----SNPLQASLQNLER------------ 158 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~------------ 158 (469)
+.+..++.+|++++|+..+++|.+|.++.....|++|+..+.+|+.+.-. -.++.+.+..+++
T Consensus 61 ~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 61 EPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred hhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999654211 1122222222111
Q ss_pred -----------h--------hhhhhcc---------------------------------cCCCCCCCcccccccccccc
Q 012162 159 -----------T--------TASLIGR---------------------------------RIHGTPERTDDFDCTLCLKL 186 (469)
Q Consensus 159 -----------~--------~~~~~~~---------------------------------~~~~~~~~~~~~~C~ic~~~ 186 (469)
. +.....+ ...+.....+.+.|.|.+++
T Consensus 141 Q~~El~~yl~slie~~~~~~~s~~~~N~~sde~~k~~q~~~~~~~d~~~kel~elf~~v~e~rk~rEvpd~lcgkIt~el 220 (284)
T KOG4642|consen 141 QELELHSYLESLIEGDRERELSEWQENGESDEHLKTMQVPIEQDHDHTTKELSELFSKVDEKRKKREVPDYLCGKITLEL 220 (284)
T ss_pred HHhhHHHHHHHHhccchhhHHHHHHHcCCChHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhHHh
Confidence 0 0100000 12244555666777999999
Q ss_pred ccccEEccCCCcccHHHHHHHccc-CCCccccccccccCCCcccCcccHHHHHHHhchH
Q 012162 187 LYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 244 (469)
Q Consensus 187 ~~~p~~~~cgh~~C~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (469)
+.+|+++|.|-+|-+.=|.+++.. +...|+.|.++. +.++.+|..|+..|..|+.+
T Consensus 221 ~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lt--e~q~ipN~alkevIa~fl~~ 277 (284)
T KOG4642|consen 221 MREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLT--EYQLIPNLALKEVIAAFLKE 277 (284)
T ss_pred hcCCccCccccchhHHHHHHHHHHhccCCchhcccCC--HHhhccchHHHHHHHHHHHh
Confidence 999999999999999999999875 668999999984 46889999999999888654
No 9
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.8e-15 Score=148.31 Aligned_cols=116 Identities=29% Similarity=0.480 Sum_probs=112.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+.....+|+.+|+.|||..|+.+|++||+.+|+|+.+|.|||.||.+++.+ ..|+.+
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~-----------------------~~aL~D 414 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY-----------------------PEALKD 414 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH-----------------------HHHHHH
Confidence 677788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
++.+++++|++.++|++.|.++..+.+|++|++.|.+++++||++.++...+.++-.++
T Consensus 415 a~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 415 AKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988887765
No 10
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.7e-15 Score=148.62 Aligned_cols=113 Identities=35% Similarity=0.461 Sum_probs=110.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..++.+|+.+|..|||+.|+.+|+.||.++|.|+.+|.||+.+|..+|+| ++|+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~-----------------------~~al~d 58 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSY-----------------------EKALKD 58 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhH-----------------------HHHHHH
Confidence 567889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
..+.++++|+|+++|.++|.++..+|+|++|+..|.++|+.+|+|+.+..++..++
T Consensus 59 a~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 59 ATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999888
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=1.2e-14 Score=124.97 Aligned_cols=116 Identities=12% Similarity=0.165 Sum_probs=109.7
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 103 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 103 (469)
.+...|..++..|+|++|+..|++++.++|.++.+|.++|.++..+|++ ++|+..++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~y~ 82 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY-----------------------TTAINFYG 82 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-----------------------HHHHHHHH
Confidence 4667899999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 104 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 104 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
++++++|+++.+++++|.++..+|++++|+..|+++++++|+++........++..+..
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888777766554
No 12
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=124.96 Aligned_cols=123 Identities=25% Similarity=0.366 Sum_probs=115.4
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC-----cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
...+..++..|+.+|..|+|++|...|+.||++-|.. +.+|.|+|.|+++++.+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--------------------- 150 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--------------------- 150 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH---------------------
Confidence 4568889999999999999999999999999999975 47899999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhh
Q 012162 94 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 164 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 164 (469)
+.|+.++.+||+++|.+.+|+.++|.+|.++.+|++|+.+|++.++++|....++..+.++...+...+
T Consensus 151 --e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ern 219 (271)
T KOG4234|consen 151 --ESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERN 219 (271)
T ss_pred --HHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888776654
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.5e-14 Score=138.53 Aligned_cols=126 Identities=25% Similarity=0.402 Sum_probs=116.2
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---------------cccccchhHHHHHHHhhhccCCCCCc
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---------------PIVLGNRSSAYIRISQFLKHRPPSAS 81 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (469)
+....+......|+.+|+.|+|..|+..|++|++.-+.. ..+|.|+|.||.++++|
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~--------- 273 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY--------- 273 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH---------
Confidence 466778889999999999999999999999998874422 27899999999999999
Q ss_pred ccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 82 EYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 82 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
.+|+..+.++|.++|+|.+|+|++|.++..+|+|+.|+.+|+++++++|+|+.+...+..+.++++
T Consensus 274 --------------~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 274 --------------KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred --------------HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhhc
Q 012162 162 SLIG 165 (469)
Q Consensus 162 ~~~~ 165 (469)
....
T Consensus 340 ~~~~ 343 (397)
T KOG0543|consen 340 EYEE 343 (397)
T ss_pred HHHH
Confidence 7654
No 14
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.55 E-value=1.4e-14 Score=143.41 Aligned_cols=118 Identities=26% Similarity=0.421 Sum_probs=113.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+..+|+.++..|+|++|+.+|++|++++|+++.+|+++|.+|+.+|++ ++|+.++
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~-----------------------~eAl~~~ 59 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF-----------------------TEAVADA 59 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 45788999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..++..+...
T Consensus 60 ~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 60 NKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999888654
No 15
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.53 E-value=3.5e-14 Score=131.91 Aligned_cols=119 Identities=25% Similarity=0.341 Sum_probs=111.4
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
......++.+|+.||++|.|++||.+|.+++.++|.|+..+.|||.+|+++++| ..|
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F-----------------------A~A 150 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF-----------------------AQA 150 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH-----------------------HHH
Confidence 445667899999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
..+|..|+.+|-.+.+||.++|.+-..+|...+|..+++.+|++.|++.+++..++.+....
T Consensus 151 E~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~ 212 (536)
T KOG4648|consen 151 EEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR 212 (536)
T ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999999999998888777765543
No 16
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.45 E-value=7.3e-13 Score=112.71 Aligned_cols=118 Identities=10% Similarity=0.111 Sum_probs=110.6
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++......|..++..|++++|+..|++++..+|+++.++.++|.++..+|++ ++|+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 72 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY-----------------------EEAID 72 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-----------------------HHHHH
Confidence 3566888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
.++++++++|+++..++.+|.++...|++++|+..|+++++++|++.........+.+.+.
T Consensus 73 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 73 AYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998877777766553
No 17
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=1.3e-12 Score=110.99 Aligned_cols=121 Identities=9% Similarity=-0.021 Sum_probs=109.8
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
...+.++..|..++..|++++|...|+-...+||.++..|+++|.++..+|+| .+|+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~-----------------------~~AI 89 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW-----------------------GEAI 89 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-----------------------HHHH
Confidence 45678889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
..|.+|+.++|+++.++++.|.++..+|+.+.|++.|+.|+...-.++......++.+..+...
T Consensus 90 ~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 90 YAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998866666655566666655443
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1e-12 Score=127.48 Aligned_cols=100 Identities=30% Similarity=0.478 Sum_probs=95.2
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
+..+.+..++.+|+.+|+.|+|++||.+|++||++.|+.|..|.|||.||..+|+| .
T Consensus 110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~-----------------------~ 166 (606)
T KOG0547|consen 110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDW-----------------------E 166 (606)
T ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhH-----------------------H
Confidence 45667899999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
+.++++.+|++++|++.+++++++.++..+|++++|+.+..-.
T Consensus 167 ~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ 209 (606)
T KOG0547|consen 167 KVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVL 209 (606)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999887643
No 19
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.38 E-value=2.2e-12 Score=117.00 Aligned_cols=117 Identities=12% Similarity=0.148 Sum_probs=105.6
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHH-HHHHh--hhccCCCCCcccCccCCCCCchhH
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAY-IRISQ--FLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
..++..|...|..+...|++++|+..|++|++++|+++.++.++|.++ ...|+ +
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~----------------------- 126 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMT----------------------- 126 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCc-----------------------
Confidence 345788999999999999999999999999999999999999999985 66676 5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
.+|...++++++++|+++.+++.+|.+++..|+|++|+.+|+++++++|.+.+-...+++++.
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~~ 189 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESINM 189 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999987776666655544
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.33 E-value=1.8e-12 Score=128.91 Aligned_cols=116 Identities=26% Similarity=0.272 Sum_probs=101.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
..+|++.|+.+-..+.|+.|+.+|.+|+.+.|+++.+|-|+|.+|+..|.. +.|+..
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l-----------------------dlAI~~ 308 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL-----------------------DLAIDT 308 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccH-----------------------HHHHHH
Confidence 567888888888888888888888888888888888888888888888888 899999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
++++++++|+.+.||.++|.++-..|+..+|.+.|.+||.+.|+.+++...+..+.+..
T Consensus 309 Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 309 YKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred HHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988888877766544
No 21
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=3.3e-12 Score=123.65 Aligned_cols=106 Identities=19% Similarity=0.145 Sum_probs=101.9
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+..+..+|..+...|++++|+..|++|++++|+++.+|+++|.++..+|++ ++|+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~ 118 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF-----------------------DAAY 118 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 34677889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
..++++++++|++..+|+++|.++...|++++|+..|+++++++|+++.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999999999873
No 22
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.33 E-value=3.2e-12 Score=124.89 Aligned_cols=121 Identities=21% Similarity=0.309 Sum_probs=116.2
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+..+|+.++..++|+.|+..|.+||+++|+.+.++.+||.++++.++| ..|+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~-----------------------~~Al~ 59 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF-----------------------GGALH 59 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechh-----------------------hhHHH
Confidence 4677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 164 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 164 (469)
++.+|++++|...++|+++|.+...+++|.+|+..|+....+.|+++.+...+..+++.+....
T Consensus 60 Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 60 DALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998887644
No 23
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.9e-12 Score=121.29 Aligned_cols=123 Identities=24% Similarity=0.378 Sum_probs=113.8
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC----cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
.+....+...|+.+|+.|+|.+|.+.|+.||.++|++ +.+|.|||.+..++|+.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl---------------------- 303 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL---------------------- 303 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc----------------------
Confidence 3446778899999999999999999999999999985 47899999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 95 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
.+|+.+++.|+++||.+.++|.+.|.++..+++|++|.++|++|++..-+ .+.+..+...+..|+...+
T Consensus 304 -~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 304 -REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred -hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999998876 8888889998888887765
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.30 E-value=1.7e-12 Score=94.77 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=56.0
Q ss_pred ccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHh
Q 012162 177 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 241 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~ 241 (469)
++.|+||.+.+.+||.++|||+||+.||.+|+..+..||.|+.++. ..++.+|..+++.++.|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~--~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT--HEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC--hhhceeCHHHHHHHHhC
Confidence 3679999999999999999999999999999988779999999884 35788899999988754
No 25
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.30 E-value=1.6e-12 Score=97.38 Aligned_cols=68 Identities=26% Similarity=0.467 Sum_probs=55.7
Q ss_pred ccccccccccccccccEEccCCCcccHHHHHHHccc-CCCccccccccccCCCcccCcccHHHHHHHhchH
Q 012162 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 244 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (469)
.+.|.|+|+..+|.+||.++|||+||+.||..|+.. +..||.|+.++.. .++.+|..|++.|++|..+
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~--~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE--SDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG--GGSEE-HHHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc--ccceECHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999988 7789999998853 5899999999999998643
No 26
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.26 E-value=7.3e-12 Score=124.65 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=104.0
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..++++.+.|+.+..+|.++.|+.+|.+|++..|.-+.++.|+|.+|.+.|++ ++|+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl-----------------------~~Ai 408 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNL-----------------------DDAI 408 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccH-----------------------HHHH
Confidence 44677788888888888888888888888888888888888888888888888 8999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
..++.|++++|..+++|.++|..|-.+|+.+.|++.|.+|+.++|..+++...+..+.+.-++.
T Consensus 409 ~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 409 MCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence 9999999999999999999999999999999999999999999999888888888887765543
No 27
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.23 E-value=5.1e-12 Score=83.13 Aligned_cols=38 Identities=50% Similarity=1.238 Sum_probs=30.3
Q ss_pred cccccccccccEEccCCCcccHHHHHHHcccC----CCcccc
Q 012162 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG----NKCPLC 217 (469)
Q Consensus 180 C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~----~~CP~C 217 (469)
|+||+++|.+||+++|||+||+.||..+++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999988643 469987
No 28
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=4.9e-11 Score=106.05 Aligned_cols=107 Identities=20% Similarity=0.137 Sum_probs=100.0
Q ss_pred hhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 16 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
.+....+......|..|+..||+..|...+++||+.||++..+|..+|..|.+.|..
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----------------------- 85 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----------------------- 85 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-----------------------
Confidence 445556788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
+.|-+.|++|++++|++.+.+.+.|..+...|+|++|...|++|+. +|..
T Consensus 86 ~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y 135 (250)
T COG3063 86 DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY 135 (250)
T ss_pred hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCC
Confidence 9999999999999999999999999999999999999999999998 5543
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=3e-11 Score=121.82 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=113.5
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
...+.|...|+.+..+++++.||++|.+|+.+||+.+.+|..+|.=+.....| +.|.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~-----------------------d~a~ 475 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF-----------------------DKAM 475 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH-----------------------HhHH
Confidence 34577888999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
..|+.||..+|++..|||.+|.+|.++++++.|.-.|++|+++||.|..+.-.+..+...++...+
T Consensus 476 ~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 476 KSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred HHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence 999999999999999999999999999999999999999999999999888777777766655433
No 30
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.19 E-value=8.2e-11 Score=97.29 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=100.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
...++..|..++..|+|++|+..|.++++.+|++ +.+++.+|.+++..|++ +.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A 58 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY-----------------------ADA 58 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH-----------------------HHH
Confidence 3567899999999999999999999999999887 46888999999999999 999
Q ss_pred HHHHHHHhhccccc---hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHH
Q 012162 99 LKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 154 (469)
Q Consensus 99 ~~~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 154 (469)
+..+++++..+|++ +.+++.+|.++..+|++++|+..|+++++..|++..+.....
T Consensus 59 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 59 AKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 99999999999885 678999999999999999999999999999999887665543
No 31
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.7e-10 Score=115.00 Aligned_cols=197 Identities=16% Similarity=0.188 Sum_probs=141.5
Q ss_pred CCccceeee--ccCCCCccCcccCchHHHHHHHHHHhC-CceeEEEEeCCCCC---------------------------
Q 012162 262 DLMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEG-NHRMGMVIIDPTTG--------------------------- 311 (469)
Q Consensus 262 ~~lPl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~--------------------------- 311 (469)
..+|++|++ ++|||-..++.+..++...++++.+.. ...+|+++..++.+
T Consensus 67 ~~l~~Lpi~~~pL~PGf~~~i~v~~~~~~~~i~~~l~~~qpyiG~fl~kdd~~~~~~~t~~~~vyi~~~~~~~~~~~~~l 146 (906)
T KOG2004|consen 67 PRLPALPITRGPLFPGFYKRIEVKSPKVLALIREKLRRQQPYIGAFLLKDDSSGDSVITSINEVYILEVFPGKDKLRMVL 146 (906)
T ss_pred cccceeeccCCCcCCCceeEEEecCHHHHHHHHHHHHhcCcccceeeeccCCCCCcceeeccccceeeeecCCcchhhhh
Confidence 348999997 999999999999999999999988764 56788888743211
Q ss_pred ccccccceE---EEEEeeecCCceEEEEEEeccceEEeeeeccC--CeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHH
Q 012162 312 SVADFACEV---EITECEPLPDGRFVLEIESRRRFRILRSWDQD--GYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEY 386 (469)
Q Consensus 312 ~~~~~G~~~---~I~~~~~~~dg~~~v~~~g~~R~~i~~~~~~~--~~~~a~ve~~~d~~~~~~~~~~~l~~l~~~l~~~ 386 (469)
..++.+.++ .|.+......+.+.+.+.|.+|+++.+...+. +....+++-+.+.+.+. ++++.++...+...
T Consensus 147 ~~hRr~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~i~e~~~e~~~~vl~v~v~~v~~e~~~~---~~~~ka~~~ei~~t 223 (906)
T KOG2004|consen 147 YPHRRIRITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEEKEAEVLSVEVENVKDEPFKK---DEEIKALTSEILKT 223 (906)
T ss_pred hhhhheeeeeeccccccccccccceeecccccccccchhhhccccCCceeeeeecccCCccCc---chHHHHHHHHHHHH
Confidence 002222222 22222222456788888899999998877653 34556666666544332 23478888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhcCCCCCCCcchhHHHHHhcCCCChhHhhhhccCCCHHHHHHHHHHHHHhhhccc
Q 012162 387 ARLWLRREKESARQDRRRLEKLLNVEVMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQGC 466 (469)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eRl~~l~~~l~~~~~~~ 466 (469)
+.+++..+........ .+.. .....+|..|+|+.|+....+..+.|++|+..|+.+||++.+.+|.++++..
T Consensus 224 ~rdii~~n~l~r~~v~----~~~~----~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~ 295 (906)
T KOG2004|consen 224 LRDIIAVNSLFREQVA----TLSQ----LIVEDNPIKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELA 295 (906)
T ss_pred HHHHHHhhHHHHHHHH----HHHH----HhcccChhHHHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 8888876554433111 1111 2346889999999999999999999999999999999999999999999877
Q ss_pred cCC
Q 012162 467 RLQ 469 (469)
Q Consensus 467 ~~~ 469 (469)
++|
T Consensus 296 klq 298 (906)
T KOG2004|consen 296 KLQ 298 (906)
T ss_pred HHH
Confidence 654
No 32
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=9.9e-11 Score=109.30 Aligned_cols=114 Identities=17% Similarity=0.269 Sum_probs=105.2
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
....++..+..|..++..|++..|+.+|..|++.||++..+++.||.+|+.+|+- ..
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-----------------------k~ 90 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-----------------------KA 90 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC-----------------------cc
Confidence 3456788899999999999999999999999999999999999999999999998 89
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHH
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 154 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 154 (469)
|+.+++++|++.|+...|...+|.++.++|++++|.++|++.|.-+|++....+...
T Consensus 91 al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqs 147 (504)
T KOG0624|consen 91 ALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQS 147 (504)
T ss_pred chhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 999999999999999999999999999999999999999999999997665444433
No 33
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.13 E-value=4.8e-10 Score=87.27 Aligned_cols=99 Identities=28% Similarity=0.447 Sum_probs=94.0
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 103 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 103 (469)
.+...|..++..|++++|+..++++++..|.++.++..+|.++...+++ ++|+..++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~a~~~~~ 58 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY-----------------------EEALEDYE 58 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHH
Confidence 3677899999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 104 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 104 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
+++++.|.+..+++.+|.++...|++++|...+.++++.+|+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 59 KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999998874
No 34
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.12 E-value=2.3e-10 Score=122.45 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=107.3
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+..+...|..++..|++++|+..|+++++++|+++..|.++|.++..+|++ ++|+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~-----------------------~eA~ 385 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDP-----------------------DKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 34566788899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
..++++++++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..+...+..+...+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999988776665554433
No 35
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.11 E-value=7.3e-11 Score=87.80 Aligned_cols=67 Identities=27% Similarity=0.461 Sum_probs=64.9
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHH-hhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
++..+...|..++..|+|++|+..|++|++++|+++.+|+++|.+|..+| ++ .+|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~-----------------------~~A~ 58 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY-----------------------EEAI 58 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH-----------------------HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH-----------------------HHHH
Confidence 47889999999999999999999999999999999999999999999999 89 9999
Q ss_pred HHHHHHhhccc
Q 012162 100 KDAEKLLNLQS 110 (469)
Q Consensus 100 ~~~~~al~l~p 110 (469)
.+++++++++|
T Consensus 59 ~~~~~al~l~P 69 (69)
T PF13414_consen 59 EDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHcCc
Confidence 99999999998
No 36
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.09 E-value=3.4e-10 Score=121.06 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=108.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..++..|+|++|+..|+++++++|+++.+|+++|.+++.+|++ ++|+.+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~ 421 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF-----------------------AQAGKD 421 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 567788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
++++++++|++..+++.+|.++..+|++++|+..|+++++..|+++.+...+..+-...+
T Consensus 422 ~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999988777655554433
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.1e-10 Score=107.92 Aligned_cols=121 Identities=20% Similarity=0.156 Sum_probs=99.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
..++...|..+...++-..|+..|++|++++|.|..+|+++|++|--++-. .=|+-+
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh-----------------------~YaLyY 420 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH-----------------------FYALYY 420 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch-----------------------HHHHHH
Confidence 455666788888888888888888888888888888888888888877776 678888
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
+++|+++.|+++..|..+|.+|.++++.++|+..|++|+.....+..+...+..+.+.++...+
T Consensus 421 fqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 421 FQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 8888888888888888888888888888888888888888877777777777777777765544
No 38
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.5e-10 Score=104.10 Aligned_cols=109 Identities=25% Similarity=0.401 Sum_probs=98.7
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC----cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
...|..++..||.+|+..+|..|+..|+++|+..-.| +.+|.|||.|.+.+|+|
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny---------------------- 135 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY---------------------- 135 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH----------------------
Confidence 3468899999999999999999999999999986554 47899999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 95 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
..|+.++.+|+.++|.+.++|++-|.++..+.++++|..+.+..+.++-+.+.+.
T Consensus 136 -Rs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 136 -RSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred -HHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999988766555443
No 39
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.06 E-value=1.6e-10 Score=85.99 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=64.5
Q ss_pred CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-HHHHHH
Q 012162 55 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE-RYDMAR 133 (469)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~-~~~~A~ 133 (469)
++..|..+|.+++..|+| ++|+..++++++++|+++.+|+++|.++..+| ++++|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~ 58 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY-----------------------EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAI 58 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH-----------------------HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHH
Confidence 567889999999999999 99999999999999999999999999999999 899999
Q ss_pred HHHhccccCCC
Q 012162 134 DAILSGLQVDP 144 (469)
Q Consensus 134 ~~~~~al~~~p 144 (469)
.+|+++++++|
T Consensus 59 ~~~~~al~l~P 69 (69)
T PF13414_consen 59 EDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHcCc
Confidence 99999999998
No 40
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=99.06 E-value=4.4e-10 Score=88.66 Aligned_cols=87 Identities=21% Similarity=0.374 Sum_probs=73.0
Q ss_pred ccceeee--ccCCCCccCcccCchHHHHHHHHHHhCCc--eeEEEEeCCCCCccccccceEEEEEeeecCCceEEEEEEe
Q 012162 264 MPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNH--RMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLEIES 339 (469)
Q Consensus 264 lPl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~G~~~~I~~~~~~~dg~~~v~~~g 339 (469)
+|++|++ ++|||+..|+.++++++..++++++++++ .++++++++...+
T Consensus 2 lpviPl~~~vlfP~~~~pl~v~~~~~i~~i~~~~~~~~~~~i~~~~~~~~~~~--------------------------- 54 (92)
T smart00464 2 LPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQDDPTET--------------------------- 54 (92)
T ss_pred ceEEEcCCCccCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEEEEEccCCCCC---------------------------
Confidence 7899997 99999999999999999999999998776 4555554322111
Q ss_pred ccceEEeeeeccCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhcCCCCCC
Q 012162 340 RRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEVMMPPSQ 419 (469)
Q Consensus 340 ~~R~~i~~~~~~~~~~~a~ve~~~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 419 (469)
T Consensus 55 -------------------------------------------------------------------------------- 54 (92)
T smart00464 55 -------------------------------------------------------------------------------- 54 (92)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchhHHHHHhcCCCChhHhhhhccCCCHHHHHHHHHHH
Q 012162 420 DPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIF 458 (469)
Q Consensus 420 ~p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eRl~~l~~~ 458 (469)
|..++||+|+.++++.++||+|||+.|+.+|++.+++|
T Consensus 55 -~~~~~~~~a~~~~~~~~~~q~lL~~~~~~~Rl~~~~~~ 92 (92)
T smart00464 55 -PEPLSDTIAALMPLELHEKQELLELEGTNKRLEKVIKL 92 (92)
T ss_pred -chhhhHHHhhcccccHHHHHHHHhcccHHHHHHHHhcC
Confidence 23489999999999999999999999999999998764
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.06 E-value=5.7e-10 Score=123.00 Aligned_cols=114 Identities=9% Similarity=-0.049 Sum_probs=104.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..+.+.|++++|+..|+++++++|+++.++.++|.++...|++ ++|+..
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-----------------------eeAi~~ 665 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-----------------------AQSREM 665 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 456778899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
++++++++|+++.+++++|.++..+|++++|+..|+++++++|++..+......+..
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999877655444433
No 42
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1.1e-10 Score=114.10 Aligned_cols=69 Identities=25% Similarity=0.555 Sum_probs=60.7
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhc
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 242 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~ 242 (469)
......+.|+||.+.+.+|++++|||+||..||..|+.....||.|+..+.. ..+..|..|.++|+.|.
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~--~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE--SKLRSNWLVSEIVESFK 89 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc--ccCccchHHHHHHHHHH
Confidence 3456778999999999999999999999999999999877789999998753 47888999999999764
No 43
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-09 Score=97.34 Aligned_cols=124 Identities=25% Similarity=0.335 Sum_probs=106.2
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhc--------CCCCCc----------ccccchhHHHHHHHhhhccCCC
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANN--------IKPGDP----------IVLGNRSSAYIRISQFLKHRPP 78 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~p~~~----------~~~~~~a~~~~~~~~~~~~~~~ 78 (469)
++...+..+..+||.+|+.|+|.+|...|..|+. ..|.++ .++.|.+.|++..|+|
T Consensus 173 eKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~------ 246 (329)
T KOG0545|consen 173 EKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY------ 246 (329)
T ss_pred HhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH------
Confidence 4556678889999999999999999999999963 356554 6789999999999999
Q ss_pred CCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch-hHHHHHHHH
Q 012162 79 SASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP-LQASLQNLE 157 (469)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~ 157 (469)
-++++.+...+..+|.+.+|||++|.+....-+.++|.++|.++|+++|.-+. +...++.++
T Consensus 247 -----------------yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le 309 (329)
T KOG0545|consen 247 -----------------YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLE 309 (329)
T ss_pred -----------------HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997544 445555555
Q ss_pred Hhhhhh
Q 012162 158 RTTASL 163 (469)
Q Consensus 158 ~~~~~~ 163 (469)
..+...
T Consensus 310 ~r~~ek 315 (329)
T KOG0545|consen 310 NRMAEK 315 (329)
T ss_pred HHHHHh
Confidence 554443
No 44
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.03 E-value=2.1e-10 Score=88.98 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=74.0
Q ss_pred HhccHHHHHHHHHHHhcCCCC--CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcccc
Q 012162 34 RESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 111 (469)
Q Consensus 34 ~~~~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 111 (469)
..|+|+.|+..|+++++.+|. +...++++|.||+++|+| .+|+..+++ .+.+|.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y-----------------------~~A~~~~~~-~~~~~~ 56 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY-----------------------EEAIELLQK-LKLDPS 56 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH-----------------------HHHHHHHHC-HTHHHC
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHH-hCCCCC
Confidence 368999999999999999995 466778899999999999 999999999 999999
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 112 SMKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
+...++.+|.++..+|+|++|+..|+++
T Consensus 57 ~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 57 NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999999999875
No 45
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.2e-10 Score=103.12 Aligned_cols=50 Identities=42% Similarity=1.031 Sum_probs=44.3
Q ss_pred CccccccccccccccccEEccCCCcccHHHHHHHccc---CCCcccccccccc
Q 012162 174 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR---GNKCPLCRAVLFI 223 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~---~~~CP~Cr~~~~~ 223 (469)
....|+|.||++.-++||++.|||.||+.||.+|+.. ...||+|+..+..
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 5678999999999999999999999999999999973 3469999998743
No 46
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.02 E-value=1.6e-10 Score=100.67 Aligned_cols=48 Identities=38% Similarity=0.964 Sum_probs=41.8
Q ss_pred ccccccccccccccccEEccCCCcccHHHHHHHccc----------------CCCccccccccc
Q 012162 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR----------------GNKCPLCRAVLF 222 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~----------------~~~CP~Cr~~~~ 222 (469)
...+.|+||++.+.+|++++|||.||+.||.+|+.. ...||.||.++.
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 357899999999999999999999999999999642 236999999874
No 47
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.02 E-value=6.7e-10 Score=95.53 Aligned_cols=96 Identities=15% Similarity=0.077 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHH
Q 012162 42 ISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKAN 121 (469)
Q Consensus 42 ~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 121 (469)
...|++|++++|++ ++++|.++...|++ ++|+..+++++.++|.++.+|+.+|.
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~-----------------------~~A~~~~~~al~~~P~~~~a~~~lg~ 66 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDY-----------------------SRAVIDFSWLVMAQPWSWRAHIALAG 66 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 46799999999986 66789999999999 99999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 122 ALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 122 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
++..+|++++|+..|+++++++|++..+...+..+-..++..
T Consensus 67 ~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 67 TWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999888877665555443
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1e-09 Score=106.37 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=105.7
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 107 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 107 (469)
-||-|.-+++.++|+.+|++|++++|....+|..+|.=|+.+++- ..|+..+++|++
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt-----------------------~AAi~sYRrAvd 392 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT-----------------------HAAIESYRRAVD 392 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc-----------------------HHHHHHHHHHHh
Confidence 377788889999999999999999999999999999999999998 999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 108 LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 108 l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
++|.+..|||.+|++|.-++-..=|+-+|++|+++.|+|+.++..+..+-.++...
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999998888877766543
No 49
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.2e-10 Score=106.14 Aligned_cols=52 Identities=37% Similarity=0.846 Sum_probs=46.2
Q ss_pred CCCCccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 171 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 171 ~~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.........|.+|++...+|.-+||||.||+.||..|......||+||..+.
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 3344566899999999999999999999999999999998888999999874
No 50
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.01 E-value=1.1e-09 Score=97.34 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=96.7
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
...++..+...|..+...|+|++|+.+|.+++++.|+. +.++.++|.++..+|++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~---------------------- 88 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH---------------------- 88 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH----------------------
Confidence 44567888999999999999999999999999987764 46899999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhH--------------HHHHHHHHhccccCCCCC
Q 012162 95 AELALKDAEKLLNLQSNSMKSHLLKANALILLER--------------YDMARDAILSGLQVDPFS 146 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 146 (469)
++|+..++++++++|++..++..+|.++...|+ +++|++.+++++.++|++
T Consensus 89 -~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 89 -DKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred -HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999999999988877 688999999999999987
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.01 E-value=1.1e-09 Score=115.40 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=88.1
Q ss_pred ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHH
Q 012162 36 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS 115 (469)
Q Consensus 36 ~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 115 (469)
+++++|+..+++|++++|+++.+|..+|.++...|++ ++|+..++++++++|+++.+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~~~~Al~l~P~~~~a 374 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY-----------------------IVGSLLFKQANLLSPISADI 374 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH-----------------------HHHHHHHHHHHHhCCCCHHH
Confidence 4589999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 116 HLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 116 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
|+.+|.++...|++++|+..|+++++++|++..+.
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 99999999999999999999999999999987653
No 52
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.00 E-value=1.3e-10 Score=107.21 Aligned_cols=66 Identities=24% Similarity=0.616 Sum_probs=59.3
Q ss_pred CccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHh
Q 012162 174 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 241 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~ 241 (469)
....+.|-||.+.|..|+++||||+||.-||..++.....||.|+.++.- ..+..|+.+.++|+.|
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E--s~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE--SDLRNNRILDEIVKSL 85 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch--hhhhhhhHHHHHHHHH
Confidence 34667999999999999999999999999999999999999999998853 5788999999999875
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.00 E-value=1e-09 Score=115.59 Aligned_cols=118 Identities=14% Similarity=-0.061 Sum_probs=104.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++..+...|..+...|++++|+..|++|++++|+++.+++++|.++...|++ ++|+.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~-----------------------~eAi~ 393 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL-----------------------EEALQ 393 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 3566778899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC-CCCchhHHHHHHHHHhhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD-PFSNPLQASLQNLERTTA 161 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~ 161 (469)
.++++++++|.++.+++.++.+++..|++++|+..++++++.+ |+++.+...+..+...++
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 9999999999999888888888888999999999999999875 777776666655544333
No 54
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.1e-09 Score=98.96 Aligned_cols=124 Identities=15% Similarity=0.070 Sum_probs=108.0
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
.+..+++.|...|..|+..|++..|...|.+|+++.|+++.++...|.+++...+- ....
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~--------------------~~ta 210 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ--------------------QMTA 210 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--------------------cccH
Confidence 34456788999999999999999999999999999999999999999998876542 1127
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
++...+++++++||++..+.+.+|..++..|+|.+|...++..++..|.+..-...+++.-...
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999998887766665544433
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=1.7e-09 Score=104.84 Aligned_cols=139 Identities=17% Similarity=0.094 Sum_probs=96.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCC--------CCCcccCccC-----
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRP--------PSASEYRPLN----- 87 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~----- 87 (469)
.+..+...|..+...|+|++|+..|++|++++|++..++.++|.+++..|++.+... .++..++.+|
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~ 176 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAE 176 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999887766522210 0000011100
Q ss_pred -----------------CCCCchh-------------HHHHHH----HHHHHhhccccchHHHHHHHHHHHHHhHHHHHH
Q 012162 88 -----------------GLDPTTH-------------AELALK----DAEKLLNLQSNSMKSHLLKANALILLERYDMAR 133 (469)
Q Consensus 88 -----------------~~~~~~~-------------~~~A~~----~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 133 (469)
..++... ..+++. .++.+++++|+.+.+|+++|.++..+|++++|+
T Consensus 177 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 177 SKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred ccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 0011000 011121 122233566777889999999999999999999
Q ss_pred HHHhccccCCC-CCchhHHHHHHHHHh
Q 012162 134 DAILSGLQVDP-FSNPLQASLQNLERT 159 (469)
Q Consensus 134 ~~~~~al~~~p-~~~~~~~~~~~~~~~ 159 (469)
.+|++|++.+| ++.+.+..+-.+.+.
T Consensus 257 ~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 257 ALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999997 666666666555554
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=1.8e-09 Score=100.93 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=106.7
Q ss_pred hhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCc
Q 012162 16 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
+.....+..++..|..++..|+|++|+..|+++++..|+++ .+++.+|.+|+..|++
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~-------------------- 86 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDY-------------------- 86 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCH--------------------
Confidence 34455688899999999999999999999999999999886 5789999999999999
Q ss_pred hhHHHHHHHHHHHhhccccchH---HHHHHHHHHHHH--------hHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 93 THAELALKDAEKLLNLQSNSMK---SHLLKANALILL--------ERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p~~~~---~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
++|+..++++++..|+++. +++.+|.++... |++++|+..|++++..+|++......+..+..
T Consensus 87 ---~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~ 160 (235)
T TIGR03302 87 ---AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY 160 (235)
T ss_pred ---HHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 9999999999999998877 799999999876 99999999999999999999877655554443
No 57
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.99 E-value=2.9e-09 Score=96.80 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=110.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..++..|+|..|+..+.+|..++|+|+.+|..+|.+|.+.|++ +.|-..
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~-----------------------~~Ar~a 156 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF-----------------------DEARRA 156 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh-----------------------hHHHHH
Confidence 345556899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhh
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 164 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 164 (469)
+.+++++.|+.+.++.++|..|...|+++.|...+.++....+.+..+...+..+-.......
T Consensus 157 y~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 157 YRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 999999999999999999999999999999999999999988889999888887766665543
No 58
>PRK15331 chaperone protein SicA; Provisional
Probab=98.99 E-value=3.4e-09 Score=90.57 Aligned_cols=119 Identities=12% Similarity=0.047 Sum_probs=105.4
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
...+.++..|..++..|++++|...|+-....+|.++..+.++|.|+..+++| ++|+
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y-----------------------~~Ai 91 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF-----------------------QKAC 91 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH-----------------------HHHH
Confidence 34677888999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
..|..|..+++++|..++..|.+|..+|+.+.|+..|..++. .|.+..++..-..+-..+..
T Consensus 92 ~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 92 DLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999 57766655544444344433
No 59
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.98 E-value=2.4e-10 Score=74.33 Aligned_cols=38 Identities=47% Similarity=1.351 Sum_probs=33.5
Q ss_pred ccccccccccc-EEccCCCcccHHHHHHHcccCCCcccc
Q 012162 180 CTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDRGNKCPLC 217 (469)
Q Consensus 180 C~ic~~~~~~p-~~~~cgh~~C~~Ci~~~~~~~~~CP~C 217 (469)
|+||.+.+.+| +.++|||+||+.|+.+|++.+..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 578999999999999999888899987
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=3.8e-09 Score=103.11 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=96.0
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
...+.++..+|..+|-.|++-.|...|+++|+++|.+...|..+|.+|...++- .+.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~-----------------------~~~ 379 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS-----------------------EKM 379 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc-----------------------HHH
Confidence 334788888999999999999999999999999999888888999999888887 888
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
..+|.+|.++||.++..||.+|+.++-+++|++|+.+|+++++++|++.-..
T Consensus 380 ~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 380 WKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred HHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 8999999999999999999999999999999999999999999999886543
No 61
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.97 E-value=1.5e-10 Score=81.02 Aligned_cols=59 Identities=29% Similarity=0.830 Sum_probs=33.3
Q ss_pred cccccccccccccccEE-ccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHH
Q 012162 176 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSII 238 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~ 238 (469)
..+.|++|.+++++||. ..|.|.||+.||.+.+. ..||+|+.+.. .+++..|+.|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw--~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW--IQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S---SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHH--HHHHHhhhhhhccC
Confidence 45689999999999986 69999999999987664 45999999874 36889999998875
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.96 E-value=2.5e-09 Score=113.73 Aligned_cols=115 Identities=11% Similarity=-0.028 Sum_probs=105.3
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|......|.+++|...++.+++++|++..++.++|.++.+.+++ ++|+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~-----------------------eeA~~ 141 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI-----------------------EAGRA 141 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 3778888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
.+++++..+|+++.+++.+|.++..+|+|++|++.|+++++.+|++..+.-.+..+-+
T Consensus 142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877665544333
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=3.5e-09 Score=94.36 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=104.9
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
...++..+|..|-+.|+.+.|-+.|++|++++|++.++++|.|..+...|+| ++|..
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~-----------------------~eA~q 124 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP-----------------------EEAMQ 124 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh-----------------------HHHHH
Confidence 3567788899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhc--cccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 101 DAEKLLNL--QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 101 ~~~~al~l--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
.|++|+.. -|..+..|-++|.|..+.|+++.|.++|+++|+++|+++.....+...+..
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 99999984 355678999999999999999999999999999999999887776665543
No 64
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=2.4e-09 Score=108.22 Aligned_cols=103 Identities=15% Similarity=0.224 Sum_probs=58.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+.+|...|..+....+|++|...|+.||..+|.+..+|+++|.+|++.+++ +.|.-.
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~-----------------------e~Ae~~ 511 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL-----------------------EFAEFH 511 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh-----------------------hHHHHH
Confidence 445555566666666666666666666666666666666666666666666 555555
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
+++|++++|.+.-.....|.++..+|+.|+|++.|++|+.++|.|+
T Consensus 512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 512 FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 5555555555555555555555555555555555555555555444
No 65
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.94 E-value=6.5e-09 Score=84.15 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=96.1
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
...+....+-.+|..+...|+.+.|++.|.+|+.+.|.++.+|+|||.++.-.|+. +
T Consensus 38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~-----------------------e 94 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD-----------------------E 94 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh-----------------------H
Confidence 34455677888999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccc----hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 97 LALKDAEKLLNLQSNS----MKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
+|+.++.+|+++.... ..+|..+|.+|..+|+-+.|..+|+.|-++....
T Consensus 95 ~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 95 EALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999997654 4488999999999999999999999998886543
No 66
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=2.1e-09 Score=97.51 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=94.3
Q ss_pred hccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchH
Q 012162 35 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 114 (469)
Q Consensus 35 ~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 114 (469)
.++.++++..|+++++.+|+++.+|..+|.+|..+|++ ++|+..++++++++|+++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~-----------------------~~A~~a~~~Al~l~P~~~~ 108 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY-----------------------DNALLAYRQALQLRGENAE 108 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCCCCHH
Confidence 56779999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHH-HHHhH--HHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 115 SHLLKANAL-ILLER--YDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 115 ~~~~~g~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
++..+|.++ ...|+ +++|+..++++++++|++..+...+.......+
T Consensus 109 ~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g 158 (198)
T PRK10370 109 LYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQA 158 (198)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Confidence 999999985 67787 599999999999999999988877765544443
No 67
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=4e-09 Score=99.46 Aligned_cols=112 Identities=7% Similarity=-0.084 Sum_probs=100.5
Q ss_pred HHHHHHhHHHH-HHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 22 VFDLVQKGNRA-FRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 22 ~~~~~~~g~~~-~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
....+..|..+ ++.|+|++|+..|++.++..|++. .+++++|.+|+..|+| ++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~-----------------------~~ 198 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK-----------------------DD 198 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 45667777776 667999999999999999999984 7999999999999999 99
Q ss_pred HHHHHHHHhhcccc---chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 98 ALKDAEKLLNLQSN---SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 98 A~~~~~~al~l~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
|+..|+++++..|+ .+++++.+|.++..+|++++|+..|+++++..|++..+.....++
T Consensus 199 A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 199 AAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999998877 577999999999999999999999999999999998877666655
No 68
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=5.8e-09 Score=92.27 Aligned_cols=107 Identities=16% Similarity=0.059 Sum_probs=93.3
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
....+..+...|..+...|+|++|+..|.+|+.+.|+. +.++.++|.+|...|++
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~---------------------- 88 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH---------------------- 88 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH----------------------
Confidence 34467888999999999999999999999999997763 35899999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHH-------HHhHHH-------HHHHHHhccccCCCCCc
Q 012162 95 AELALKDAEKLLNLQSNSMKSHLLKANALI-------LLERYD-------MARDAILSGLQVDPFSN 147 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~~~~~~~~g~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 147 (469)
++|+..+++++.++|.+..++..+|.++. .+|+++ +|+..|++++..+|++.
T Consensus 89 -~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 89 -TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred -HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999999999 566655 67777778888888654
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.91 E-value=7.3e-09 Score=95.45 Aligned_cols=104 Identities=18% Similarity=0.138 Sum_probs=97.7
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
+....+..+...|..++..|+|++|+..|+++++.+|++..++..+|.++...|++ +
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~-----------------------~ 82 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGEL-----------------------E 82 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH-----------------------H
Confidence 33445788889999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
+|+..++++++++|++..+++.+|.++...|++++|+..|++++...
T Consensus 83 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 83 KAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999854
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=9.7e-10 Score=109.40 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=94.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
.+...-.|..|+-.|+|++|+.+|+.||..+|+|..+|+.+|.++....+. .+|+..
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s-----------------------~EAIsA 486 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS-----------------------EEAISA 486 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc-----------------------HHHHHH
Confidence 344556788889999999999999999999999999999999999888888 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
|.+|++|.|.+..+.|++|..++.+|-|.+|..+|-.||.+.+.
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999776
No 71
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.87 E-value=2.2e-09 Score=78.73 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=59.7
Q ss_pred chhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012162 61 NRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 140 (469)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 140 (469)
.+|..++..|+| ++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++
T Consensus 2 ~~a~~~~~~g~~-----------------------~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDY-----------------------DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHH-----------------------HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468899999999 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 012162 141 QVDPFSN 147 (469)
Q Consensus 141 ~~~p~~~ 147 (469)
+++|+|+
T Consensus 59 ~~~P~~p 65 (65)
T PF13432_consen 59 ELDPDNP 65 (65)
T ss_dssp HHSTT-H
T ss_pred HHCcCCC
Confidence 9999875
No 72
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.87 E-value=6.5e-09 Score=114.75 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=91.7
Q ss_pred HHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccc
Q 012162 31 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 110 (469)
Q Consensus 31 ~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 110 (469)
.....|++++|+..|++|++++|+ +.++.++|.++.++|++ ++|+..++++++++|
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~-----------------------deA~~~l~~AL~l~P 640 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNV-----------------------PAAVSDLRAALELEP 640 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCC
Confidence 334448999999999999999996 88888999999999998 899999999999999
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 111 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
+++.+++.+|.++...|++++|+..|+++++++|+++.+...+..+...++.
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999998887777666555444
No 73
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.87 E-value=1.2e-09 Score=98.97 Aligned_cols=66 Identities=24% Similarity=0.495 Sum_probs=55.2
Q ss_pred CccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHh
Q 012162 174 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 241 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~ 241 (469)
....+.|-||.+.++.|+.++|||+||.-||..++.....||+||.+... ..++.+..+.++++.|
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e--srlr~~s~~~ei~es~ 87 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE--SRLRGSSGSREINESH 87 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh--hhcccchhHHHHHHhh
Confidence 34567899999999999999999999999999999999999999987633 3456666777766654
No 74
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.86 E-value=2.8e-09 Score=78.18 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=60.2
Q ss_pred HhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHh
Q 012162 27 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 106 (469)
Q Consensus 27 ~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 106 (469)
.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++ ++|+..+++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY-----------------------DEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999 99999999999
Q ss_pred hccccch
Q 012162 107 NLQSNSM 113 (469)
Q Consensus 107 ~l~p~~~ 113 (469)
+++|+++
T Consensus 59 ~~~P~~p 65 (65)
T PF13432_consen 59 ELDPDNP 65 (65)
T ss_dssp HHSTT-H
T ss_pred HHCcCCC
Confidence 9999985
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.86 E-value=1.3e-08 Score=93.77 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=100.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..++..|++++|+..|.++++.+|.++.++.++|.++...|++ ++|+..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~-----------------------~~A~~~ 121 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY-----------------------EQAMQQ 121 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH-----------------------HHHHHH
Confidence 566778899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhcc--ccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 102 AEKLLNLQ--SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 102 ~~~al~l~--p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
++++++.. +.....++.+|.++...|++++|...|.++++.+|++..+...+..+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 122 FEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 99998854 55677888899999999999999999999999999887766555544433
No 76
>PLN02789 farnesyltranstransferase
Probab=98.85 E-value=1.3e-08 Score=98.96 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=74.7
Q ss_pred HHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHH-hhhccC-------CCCCcccCccCCC-----CCch-hHHHH
Q 012162 33 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHR-------PPSASEYRPLNGL-----DPTT-HAELA 98 (469)
Q Consensus 33 ~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~-------~~~~~~~~~~~~~-----~~~~-~~~~A 98 (469)
...+.+++|+..++++|+++|++..+|..|+.++..++ ++.+.. ...++.|+.+.-+ .... ...++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 34455566666666666666666666666666555554 220000 0111222221100 0000 01456
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
+..++++++++|++..+|..+|.++..+|+|++|++.+.++++.||.|..+......+
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 7777888888888888888888888888888888888888888888887776665544
No 77
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.85 E-value=2.6e-09 Score=102.78 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=100.3
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.+...+...|..+.+.|++++|+..|++|++++|+++.+...++.++...|++ +++.
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~-----------------------~~~~ 200 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY-----------------------DEAR 200 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH-----------------------HHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh-----------------------HHHH
Confidence 34667788999999999999999999999999999999999999999999999 8888
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
..+....+..|+++..+..+|.++..+|++++|+.+|+++++.+|+|+.+...+..+-...+..
T Consensus 201 ~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 201 EALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence 8888887777888889999999999999999999999999999999999888887766555544
No 78
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.2e-09 Score=92.44 Aligned_cols=50 Identities=36% Similarity=1.007 Sum_probs=43.7
Q ss_pred CCccccccccccccccc--cEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 173 ERTDDFDCTLCLKLLYE--PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~--p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
..+..+.|+||++.+.+ ||.+.|||.||+.||...+..+..||+||+++.
T Consensus 127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 34566899999998876 567999999999999999999999999998774
No 79
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.85 E-value=1.7e-09 Score=74.63 Aligned_cols=46 Identities=35% Similarity=0.922 Sum_probs=40.9
Q ss_pred ccccccccccccccEEccCCCc-ccHHHHHHHcccCCCccccccccc
Q 012162 177 DFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
+..|.||++...+++.+||||. ||..|+..++.....||.||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5689999999999999999999 999999999998889999999863
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=1.9e-08 Score=94.27 Aligned_cols=126 Identities=15% Similarity=0.227 Sum_probs=111.9
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccc----cchhHHHHHHHhhhccCCCCCcccCccCCCCCc
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVL----GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
+..+.+......+......++|.++++.+++.++.+|..+.+. ..+..||...+++
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~-------------------- 323 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF-------------------- 323 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH--------------------
Confidence 4455566777778888999999999999999999999966443 4456788888888
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 93 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
.+|+..+.++++++|++..++..+|.+|..-..|++|+..|++|++.+++|..+++++...++..+...+
T Consensus 324 ---~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~k 393 (504)
T KOG0624|consen 324 ---GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGK 393 (504)
T ss_pred ---HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999988776655
No 81
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.84 E-value=1.1e-09 Score=73.36 Aligned_cols=40 Identities=43% Similarity=1.113 Sum_probs=34.8
Q ss_pred cccccccccc---ccEEccCCCcccHHHHHHHcccCCCccccc
Q 012162 179 DCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCR 218 (469)
Q Consensus 179 ~C~ic~~~~~---~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr 218 (469)
.|+||++.+. .++.++|||.||..||.+|+..+..||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999884 346789999999999999999888999997
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.84 E-value=9.9e-09 Score=87.09 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=89.2
Q ss_pred HHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHH
Q 012162 43 SNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANA 122 (469)
Q Consensus 43 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 122 (469)
+.|+++++.+|++..+...+|.+++..|++ ++|+..+++++.++|+++.+++.+|.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~~~~~~~~~p~~~~~~~~la~~ 60 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY-----------------------DEALKLFQLLAAYDPYNSRYWLGLAAC 60 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccH-----------------------HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 578999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 123 LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
+..+|++++|...|+++++.+|++......+..+....++
T Consensus 61 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998887776665555443
No 83
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.82 E-value=1.2e-08 Score=109.49 Aligned_cols=101 Identities=18% Similarity=0.113 Sum_probs=60.2
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH----HHHHHHH
Q 012162 29 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL----ALKDAEK 104 (469)
Q Consensus 29 g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~ 104 (469)
|..+...|++++|+..|+++++.+|+++.++.++|.+|...|++ ++ |+..+++
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~-----------------------~eA~~~A~~~~~~ 275 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRS-----------------------REAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc-----------------------hhhHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666 32 4555555
Q ss_pred HhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHH
Q 012162 105 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 152 (469)
Q Consensus 105 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (469)
+++++|+++.++..+|.++...|++++|+..|+++++++|++..+...
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555555555555555555555555555555555544433
No 84
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.81 E-value=1.2e-08 Score=109.54 Aligned_cols=106 Identities=16% Similarity=0.116 Sum_probs=90.7
Q ss_pred HHHHHHhHHHHHHhccHHH----HHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 22 VFDLVQKGNRAFRESNFEE----AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~----A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
...+...|..+...|++++ |+..|+++++++|+++.++.++|.++...|++ ++
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-----------------------~e 302 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN-----------------------EK 302 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-----------------------HH
Confidence 4555667888888888885 78899999999999888888999999999988 88
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
|+..++++++++|+++.+++.+|.+|...|++++|+..|+++++.+|++..+.
T Consensus 303 A~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 303 AIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 99999999999999888888899999899999999999999888888876543
No 85
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.81 E-value=7.6e-09 Score=89.17 Aligned_cols=111 Identities=23% Similarity=0.252 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHH
Q 012162 37 NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSH 116 (469)
Q Consensus 37 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 116 (469)
-|+.|.+.|+.+...+|.+++.+++-|.+++.+.++. + +.+.....++|+.-+++||.++|+..+++
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk-~------------g~es~~miedAisK~eeAL~I~P~~hdAl 72 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFK-Q------------GPESKKMIEDAISKFEEALKINPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS--------------HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc-C------------cchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3788999999999999999999999999999998870 0 01112334899999999999999999999
Q ss_pred HHHHHHHHHHhH-----------HHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 117 LLKANALILLER-----------YDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 117 ~~~g~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
+.+|.+|..++. |++|..+|++|...+|+|...+..+....++-
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap 127 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAP 127 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhH
Confidence 999999988665 78999999999999999999999888776643
No 86
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.80 E-value=2.6e-09 Score=100.20 Aligned_cols=106 Identities=18% Similarity=0.311 Sum_probs=101.0
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
++..++.....++..++..|+++.||++|+.||.++|..+.+|.+|+.+++++++. .
T Consensus 109 e~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp-----------------------~ 165 (377)
T KOG1308|consen 109 EMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP-----------------------N 165 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCC-----------------------c
Confidence 56677888889999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
.|+.+|..|++++|+..+.|-.+|.+...+|++++|..++..+.+++-+
T Consensus 166 ~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 166 AAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999998753
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.3e-09 Score=98.81 Aligned_cols=144 Identities=19% Similarity=0.148 Sum_probs=115.3
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCcc---------CC-
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPL---------NG- 88 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~- 88 (469)
.++...+..+|+.+...|+.++|+.+|+.|..+.|.+...|.++-.+|+..|++.++...|...++.+ +|
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGT 410 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcc
Confidence 45578899999999999999999999999999999999999999999998888766555554444332 32
Q ss_pred ----CCCchhHHHHHHHHHHHhhccccchHHH---------------------------------HHHHHHHHHHhHHHH
Q 012162 89 ----LDPTTHAELALKDAEKLLNLQSNSMKSH---------------------------------LLKANALILLERYDM 131 (469)
Q Consensus 89 ----~~~~~~~~~A~~~~~~al~l~p~~~~~~---------------------------------~~~g~~~~~~~~~~~ 131 (469)
.||.+ -++|.+.++++++++|.+..|- ..+|.++...+.+++
T Consensus 411 ~V~~~dp~~-rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 411 LVLFPDPRM-REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred eeeccCchh-HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHH
Confidence 23333 2678888888888888766544 445555666778899
Q ss_pred HHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 132 ARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 132 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
|+++|..||.+||+|..+.++++.++|..+..
T Consensus 490 am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 490 AMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999987744
No 88
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.78 E-value=3.6e-09 Score=96.62 Aligned_cols=48 Identities=31% Similarity=0.891 Sum_probs=41.2
Q ss_pred cccccccccccccccc--------EEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 175 TDDFDCTLCLKLLYEP--------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p--------~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.....|+||++.+.++ +.++|||.||..||.+|+.....||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 3567999999987653 45689999999999999998889999999874
No 89
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2e-08 Score=99.85 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=98.5
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC-------CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPG-------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
..+...|..+|+.+.|.+|+.+|+.++..-+. ....+.|+|.+|.+++.|
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~----------------------- 471 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY----------------------- 471 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH-----------------------
Confidence 45667899999999999999999999943222 235689999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
.+|+..++++|.+.|.++.+|..+|.+|..+|+++.|+++|.+||.++|+|.-+...+..+
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877766643
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.77 E-value=5.5e-08 Score=90.95 Aligned_cols=118 Identities=15% Similarity=0.087 Sum_probs=99.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc---cccchhHHHHHH--------HhhhccCCCCCcccCccCCCC
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI---VLGNRSSAYIRI--------SQFLKHRPPSASEYRPLNGLD 90 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 90 (469)
...+...|..++..|+|++|+..|+++++..|+++. +++.+|.+++.. |++
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~------------------ 131 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA------------------ 131 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHH------------------
Confidence 356788999999999999999999999999999887 688999999876 677
Q ss_pred CchhHHHHHHHHHHHhhccccchHHH-----------------HHHHHHHHHHhHHHHHHHHHhccccCCCCCc---hhH
Q 012162 91 PTTHAELALKDAEKLLNLQSNSMKSH-----------------LLKANALILLERYDMARDAILSGLQVDPFSN---PLQ 150 (469)
Q Consensus 91 ~~~~~~~A~~~~~~al~l~p~~~~~~-----------------~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~ 150 (469)
++|+..++++++.+|++..++ +.+|..|...|++++|+..|++++...|+++ .+.
T Consensus 132 -----~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~ 206 (235)
T TIGR03302 132 -----REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEAL 206 (235)
T ss_pred -----HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHH
Confidence 999999999999999986543 4568889999999999999999999988765 455
Q ss_pred HHHHHHHHhhhh
Q 012162 151 ASLQNLERTTAS 162 (469)
Q Consensus 151 ~~~~~~~~~~~~ 162 (469)
..+..+...+++
T Consensus 207 ~~l~~~~~~lg~ 218 (235)
T TIGR03302 207 ARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHHHHcCC
Confidence 555555555444
No 91
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.75 E-value=2.5e-08 Score=100.51 Aligned_cols=104 Identities=9% Similarity=-0.000 Sum_probs=86.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+...|..++..|++++|+..|+++++.+|++..++..+|.+|.+.|++ ++|+..
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~~ 236 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY-----------------------AAAIEA 236 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 344667888889999999999999999999999888888999999999998 888888
Q ss_pred HHHHhhccccc-hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 102 AEKLLNLQSNS-MKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 102 ~~~al~l~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
++++++.+|.+ ..++..++.+|...|++++|+..++++++.+|++..
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 88888888776 456777888888888888888888888888887644
No 92
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.74 E-value=6.2e-08 Score=81.10 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=95.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
...+...|...++.|+|.+|++.|+....--|..+ .+...++.+|++.++| .+|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y-----------------------~~A 66 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY-----------------------EEA 66 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH-----------------------HHH
Confidence 57789999999999999999999999998888754 6778899999999999 999
Q ss_pred HHHHHHHhhccccchH---HHHHHHHHHHHHhH---------------HHHHHHHHhccccCCCCCchhHHHH
Q 012162 99 LKDAEKLLNLQSNSMK---SHLLKANALILLER---------------YDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~---~~~~~g~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
+..+++-++++|+++. ++|.+|.+++.... ..+|...|++.+..-|++.-+....
T Consensus 67 ~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 67 IAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 9999999999998854 89999999998877 7888999999998888887665443
No 93
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.73 E-value=6.2e-09 Score=68.62 Aligned_cols=38 Identities=50% Similarity=1.292 Sum_probs=34.5
Q ss_pred cccccccccccE-EccCCCcccHHHHHHHcc--cCCCcccc
Q 012162 180 CTLCLKLLYEPI-TTPCGHSFCRSCLFQSMD--RGNKCPLC 217 (469)
Q Consensus 180 C~ic~~~~~~p~-~~~cgh~~C~~Ci~~~~~--~~~~CP~C 217 (469)
|+||.+.+.+|+ .++|||+||..|+.+|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999998 44579987
No 94
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.72 E-value=9.5e-08 Score=99.77 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=80.3
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhc-------cCCCCCcccCccC---
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLK-------HRPPSASEYRPLN--- 87 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~--- 87 (469)
....+..+...|+.+|..|++++|...+.++|+.+|.++.+|+.+|.+|-..|+..| ++-..++.+..|.
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 344578899999999999999999999999999999999999999999999988711 1111111111110
Q ss_pred CCC-CchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 88 GLD-PTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 88 ~~~-~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
.+. ++.....|.-.|.+||+++|.+.+.++.++..|.++|++..|+..|.+.+.++|
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 000 012234445555555555555555555555555555555555555555555555
No 95
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=5.9e-08 Score=94.34 Aligned_cols=115 Identities=9% Similarity=0.000 Sum_probs=94.2
Q ss_pred hHHHHHHhHHHHHHhccH--HHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 21 HVFDLVQKGNRAFRESNF--EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~--~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
+...+..+|..+.+.|++ ++++.+++++++.+|+|..+|.+|+.++..+|+| ++|
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~-----------------------~ee 161 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW-----------------------EDE 161 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH-----------------------HHH
Confidence 345566666666666653 6677888888888888888888888888888888 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHH---hHH----HHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILL---ERY----DMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
+..++++|+.||++..+|+.+|.++..+ |.+ ++++++..+++.++|+|..+...+..+-.
T Consensus 162 L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 162 LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK 228 (320)
T ss_pred HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence 9999999999999999999999998776 333 57888889999999999999988877754
No 96
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.69 E-value=4.8e-08 Score=106.93 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=105.3
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|..+.+.|++++|+..|+++++++|.++.++..+|.++...|++ ++|+.
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~-----------------------~eA~~ 104 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY-----------------------DEALV 104 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 3556888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
.++++++.+|+++. ++.+|.++...|++++|+..|+++++++|++..+...+..+-
T Consensus 105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999998876665543
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=9e-08 Score=101.96 Aligned_cols=116 Identities=16% Similarity=0.011 Sum_probs=103.7
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+.+....|..+.+.+.+++|+..+++++..+|+++.+++.+|.++.++|+| ++|+
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~-----------------------~~A~ 174 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS-----------------------EQAD 174 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch-----------------------HHHH
Confidence 34778889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC-chhHHHHHHHHH
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS-NPLQASLQNLER 158 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~ 158 (469)
..|++++..+|++++++..+|.++...|+.++|...|++|++...+- +...+.+..+.+
T Consensus 175 ~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (694)
T PRK15179 175 ACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNA 234 (694)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876543 333444444443
No 98
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.67 E-value=6.5e-08 Score=110.65 Aligned_cols=126 Identities=19% Similarity=0.216 Sum_probs=96.4
Q ss_pred HhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCc--------------
Q 012162 27 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT-------------- 92 (469)
Q Consensus 27 ~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 92 (469)
.+|..++..|++++|+..|+++++.+|+++.++..+|.+|++.|++ +.|...++.....+|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~----~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR----ARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 4577777778888888888888888888777777788777777665 2222233322222221
Q ss_pred ---------------hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 93 ---------------THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 93 ---------------~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
...++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1237899999999999999999999999999999999999999999999999998876665544
No 99
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.65 E-value=7.7e-08 Score=72.17 Aligned_cols=70 Identities=26% Similarity=0.451 Sum_probs=65.2
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc
Q 012162 29 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 108 (469)
Q Consensus 29 g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 108 (469)
...+++.++|++|+..+++++.++|+++.++..+|.+++.+|+| .+|+.+++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~-----------------------~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY-----------------------EEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH-----------------------HHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999 9999999999999
Q ss_pred cccchHHHHHHHH
Q 012162 109 QSNSMKSHLLKAN 121 (469)
Q Consensus 109 ~p~~~~~~~~~g~ 121 (469)
+|+++.+...++.
T Consensus 59 ~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 59 SPDDPDARALRAM 71 (73)
T ss_pred CCCcHHHHHHHHh
Confidence 9999888766554
No 100
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.65 E-value=7.3e-08 Score=99.03 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=94.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH-
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK- 100 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~- 100 (469)
+..+...|..+..+|++.+|...|..|+.+||+++.....+|.++...|+- ..|..
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~-----------------------~la~~~ 740 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP-----------------------RLAEKR 740 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc-----------------------chHHHH
Confidence 456778899999999999999999999999999999999999999999976 44555
Q ss_pred -HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 101 -DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 101 -~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
.+..++++||.++++||.+|.++..+|+.++|.+.|..|+++++.++.
T Consensus 741 ~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 741 SLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 889999999999999999999999999999999999999999988875
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1.3e-07 Score=93.03 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=107.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
....+..+..++..|++++|...++..++..|+|+.++..++.+++..|+. .+|++.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~-----------------------~~A~e~ 362 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA-----------------------KEAIER 362 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-----------------------HHHHHH
Confidence 455667788889999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
+++++.++|+.+...+.+|.+|.+.|++.+|+..+++.+.-+|+|+..+..+......+++..+
T Consensus 363 ~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 363 LKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 9999999999999999999999999999999999999999999999999888887777665443
No 102
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.63 E-value=3.9e-08 Score=72.71 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=61.9
Q ss_pred HHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcccc
Q 012162 32 AFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 111 (469)
Q Consensus 32 ~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 111 (469)
++..|+|++|+..|+++++.+|++..++..+|.+|++.|++ ++|...+++++..+|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY-----------------------DEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H-----------------------HHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCcC
Confidence 46789999999999999999999999999999999999999 9999999999999999
Q ss_pred chHHHHHHHH
Q 012162 112 SMKSHLLKAN 121 (469)
Q Consensus 112 ~~~~~~~~g~ 121 (469)
++..+..++.
T Consensus 58 ~~~~~~l~a~ 67 (68)
T PF14559_consen 58 NPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9888777665
No 103
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.63 E-value=5.2e-08 Score=73.10 Aligned_cols=70 Identities=24% Similarity=0.340 Sum_probs=64.2
Q ss_pred hHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 63 SSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 63 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
..+|++.++| ++|+..+++++.++|+++.+++.+|.++..+|+|++|+..|+++++.
T Consensus 2 ~~~~~~~~~~-----------------------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDY-----------------------EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCH-----------------------HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4678888999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHH
Q 012162 143 DPFSNPLQASLQN 155 (469)
Q Consensus 143 ~p~~~~~~~~~~~ 155 (469)
+|++..+......
T Consensus 59 ~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 59 SPDDPDARALRAM 71 (73)
T ss_pred CCCcHHHHHHHHh
Confidence 9998887655543
No 104
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.62 E-value=1.2e-07 Score=103.74 Aligned_cols=112 Identities=11% Similarity=-0.018 Sum_probs=103.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++ ++|+..
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~-----------------------~~A~~~ 415 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP-----------------------RAAENE 415 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-----------------------HHHHHH
Confidence 345567889999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
++++++++|++..+++.+|.++..+|++++|...++++++..|+++.+...-+..
T Consensus 416 l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 416 LKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999775444433
No 105
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=3.1e-07 Score=84.78 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=101.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
+..+++.|..+++.|+|..|...|..-++.-|+. +.+++++|.+++.+|+| ..|
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y-----------------------~~A 197 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY-----------------------EDA 197 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc-----------------------hHH
Confidence 3558899999999999999999999999999986 58999999999999999 999
Q ss_pred HHHHHHHhhccccc---hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 99 LKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 99 ~~~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
...|..+++-.|++ +++++.+|.++..+|+.++|...|+++++.-|+...+......+
T Consensus 198 a~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 198 AYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999977665 67899999999999999999999999999999998877665555
No 106
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.62 E-value=1.8e-08 Score=66.14 Aligned_cols=35 Identities=40% Similarity=1.140 Sum_probs=22.2
Q ss_pred cccccccccc----cEEccCCCcccHHHHHHHcccC----CCcc
Q 012162 180 CTLCLKLLYE----PITTPCGHSFCRSCLFQSMDRG----NKCP 215 (469)
Q Consensus 180 C~ic~~~~~~----p~~~~cgh~~C~~Ci~~~~~~~----~~CP 215 (469)
|+||.+ +.+ |+.++|||+||+.|+.+++..+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 888 9999999999999999988743 2576
No 107
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.61 E-value=1.6e-07 Score=104.23 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=104.6
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
...+..+...|..++..|+|++|+..|+++++.+|+++.++..+|.+++..|++ ++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A 178 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF-----------------------DEA 178 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCH-----------------------HHH
Confidence 344677888999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
+..++++++.+|.+..+++.+|.++...|++++|+..|++++..+|++..+...+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 235 (899)
T TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALAT 235 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876554433
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=1.9e-07 Score=91.89 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=109.9
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
++...+...|..++..++..+|++.+++++.++|+.+.+..++|.+|++.|++ .+|+
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~-----------------------~eai 394 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP-----------------------QEAI 394 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh-----------------------HHHH
Confidence 45666777899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
..+.+.+.-+|+++..|..+|.+|..+|+-.+|..++-.++.++.+...+...+...++..
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998888888877777665
No 109
>PRK11906 transcriptional regulator; Provisional
Probab=98.58 E-value=4e-07 Score=90.03 Aligned_cols=118 Identities=9% Similarity=-0.015 Sum_probs=100.4
Q ss_pred HHHHhHHHHHHhcc---HHHHHHHHHHHh---cCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 24 DLVQKGNRAFRESN---FEEAISNYSRAN---NIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 24 ~~~~~g~~~~~~~~---~~~A~~~y~~al---~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
.++.+|...+..+. .+.|+.+|.+|+ +++|+.+.+|..+|.||+..--. ...++.....+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~--------------g~~~~~~~~~~ 322 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALH--------------GKSELELAAQK 322 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHh--------------cCCCchHHHHH
Confidence 66778888766654 467999999999 99999999999999999876432 11225555689
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
|...+++|++++|+++.+++.+|.++...++++.|...|++|+.++|+.+.+.....-
T Consensus 323 a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~ 380 (458)
T PRK11906 323 ALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL 380 (458)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988766554
No 110
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.57 E-value=1.4e-07 Score=69.67 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
++|+..++++++.+|++..+++.+|.+|...|++++|...+++++..+|+++.++..+..
T Consensus 8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998877766554
No 111
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.57 E-value=4e-08 Score=65.95 Aligned_cols=42 Identities=45% Similarity=1.129 Sum_probs=36.5
Q ss_pred ccccccccccccEEcc-CCCcccHHHHHHHccc-CCCccccccc
Q 012162 179 DCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDR-GNKCPLCRAV 220 (469)
Q Consensus 179 ~C~ic~~~~~~p~~~~-cgh~~C~~Ci~~~~~~-~~~CP~Cr~~ 220 (469)
.|++|.+.+.+++.++ |||.||..|+..|+.. ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4899999998887765 9999999999999987 5679999875
No 112
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=8.3e-08 Score=92.90 Aligned_cols=115 Identities=23% Similarity=0.189 Sum_probs=106.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++.++.++|+..|..|++++|.+.|.+|+..+..-..+++|+|..+-.+|+. ++|+.
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l-----------------------deald 545 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL-----------------------DEALD 545 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH-----------------------HHHHH
Confidence 4677888999999999999999999999999998999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
.|-+.-.+--++...++.+|.+|..+.+...|+++|.++..+-|+++.+...+..+-.
T Consensus 546 ~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 546 CFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 9999888888899999999999999999999999999999999999998877766643
No 113
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.54 E-value=3.5e-07 Score=92.13 Aligned_cols=111 Identities=18% Similarity=0.149 Sum_probs=73.8
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+...|..++..|+|++|+..|.++++.+|.+..++..++.++...|++ ++|+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-----------------------~~A~~~~ 164 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW-----------------------QKAIDVA 164 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH-----------------------HHHHHHH
Confidence 44556677777777777777777777777777777777777777777777 6777777
Q ss_pred HHHhhccccch-----HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 103 EKLLNLQSNSM-----KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 103 ~~al~l~p~~~-----~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
+++++.+|.+. ..+..+|.++...|++++|+..|+++++.+|++..+...+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 223 (389)
T PRK11788 165 ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDL 223 (389)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence 77766665542 2345566666677777777777777777666665554444333
No 114
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.54 E-value=2.3e-07 Score=106.24 Aligned_cols=102 Identities=15% Similarity=0.050 Sum_probs=89.2
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+...|..+.+.|++++|+..|+++++.+|+++.++.++|.+|...|++ ++|+..+
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~-----------------------~eA~~~l 660 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL-----------------------AAARAQL 660 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHHH
Confidence 34566788888889999999999999999999999999999999999998 8999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
+++++.+|+++.++..+|.++...|++++|++.|++++...|+++
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 999999999888889999999999999999999999988877654
No 115
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.54 E-value=5.5e-08 Score=64.96 Aligned_cols=41 Identities=39% Similarity=1.028 Sum_probs=34.7
Q ss_pred ccccccccc---cccEEccCCCcccHHHHHHHcccCCCcccccc
Q 012162 179 DCTLCLKLL---YEPITTPCGHSFCRSCLFQSMDRGNKCPLCRA 219 (469)
Q Consensus 179 ~C~ic~~~~---~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~ 219 (469)
.|++|...+ ..|+.++|||+||..|+.........||.||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 488999888 34678999999999999998866668999984
No 116
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.53 E-value=3.4e-08 Score=92.13 Aligned_cols=76 Identities=29% Similarity=0.578 Sum_probs=64.9
Q ss_pred CccccccccccccccccEE-ccCCCcccHHHHHHHcccCCCccccccccccCC--CcccCcccHHHHHHHhchHHHHHh
Q 012162 174 RTDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITP--RTCAVSVTLNSIIQKNFPEEYAER 249 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~ 249 (469)
......|.+|...|.++.+ +-|-||||++||..++....+||.|...+.... ..+..+..|++++.+++|.-+...
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~erE 90 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQERE 90 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHHHHH
Confidence 4567899999999999977 589999999999999999899999998875432 467788999999999999877544
No 117
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.7e-07 Score=90.17 Aligned_cols=109 Identities=21% Similarity=0.320 Sum_probs=101.4
Q ss_pred ecccCCCCCChhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCc
Q 012162 6 QANEGEGSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRP 85 (469)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 85 (469)
.+..++.+.+.+....++....+|+.++++.+|..|+..|+.|+++.|+++..|.+++.+++.+++|
T Consensus 33 ~~~~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~------------- 99 (486)
T KOG0550|consen 33 AATSPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRF------------- 99 (486)
T ss_pred hccCccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhH-------------
Confidence 3455555566677888999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHh
Q 012162 86 LNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 137 (469)
Q Consensus 86 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 137 (469)
++|+-++++.++++|...+++.+.+.++..+++..+|...|+
T Consensus 100 ----------~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 100 ----------EEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred ----------hhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998887
No 118
>PHA02926 zinc finger-like protein; Provisional
Probab=98.50 E-value=4.8e-08 Score=86.04 Aligned_cols=48 Identities=25% Similarity=0.814 Sum_probs=38.1
Q ss_pred ccccccccccccccc---------cEEccCCCcccHHHHHHHcccC------CCccccccccc
Q 012162 175 TDDFDCTLCLKLLYE---------PITTPCGHSFCRSCLFQSMDRG------NKCPLCRAVLF 222 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~---------p~~~~cgh~~C~~Ci~~~~~~~------~~CP~Cr~~~~ 222 (469)
+.+..|+||++...+ ++..+|+|+||..||..|.... ..||.||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 456799999987644 2456999999999999998632 35999999873
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.49 E-value=3.2e-07 Score=78.19 Aligned_cols=92 Identities=9% Similarity=-0.082 Sum_probs=81.2
Q ss_pred hcCC-CCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Q 012162 49 NNIK-PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE 127 (469)
Q Consensus 49 l~~~-p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~ 127 (469)
..++ ++.-...+.+|.-++..|++ ++|...|+-+..+||.++..|+++|.++..+|
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l-----------------------~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g 83 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEF-----------------------AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK 83 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 4566 67777888899999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 128 RYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 128 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
+|++|++.|.+|+.++|+|+...-....+.-++++.
T Consensus 84 ~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 84 HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 999999999999999999998877666655555443
No 120
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=1.9e-07 Score=82.48 Aligned_cols=120 Identities=23% Similarity=0.178 Sum_probs=107.4
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
+..++..++.+|..|=..|-+.-|...|++++.+.|+-+.+++.+|.-+...|+| +.
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f-----------------------da 117 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF-----------------------DA 117 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc-----------------------hH
Confidence 4456888899999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
|.+.++..+++||.+-.++.++|.+++--|+|.-|.+.+.+-.+-||+|+--...+=-.+.++
T Consensus 118 a~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~ 180 (297)
T COG4785 118 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL 180 (297)
T ss_pred HHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999985444433333333
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=4.6e-07 Score=78.01 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=75.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
....+..|..++..|+|++|+..|++++...|+. +.+...+|.+++..|+| ++|
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~-----------------------d~A 104 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY-----------------------DEA 104 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 4566678888888999999999999998877654 35677788888888888 888
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 140 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 140 (469)
+..++. +.-.+-.+.++..+|.+|...|++++|+..|++||
T Consensus 105 l~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888866 34445556778888999999999999999988875
No 122
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.49 E-value=4.5e-08 Score=83.89 Aligned_cols=120 Identities=22% Similarity=0.424 Sum_probs=88.9
Q ss_pred HHhhccccchHHHHHHHHH-HHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhcccCCCCCCCcccccccc
Q 012162 104 KLLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTL 182 (469)
Q Consensus 104 ~al~l~p~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~i 182 (469)
.++...|+-.+-|-.-|.+ |...-+|-...++|+.+++++..+.. .++.... ...+ ...-.|.|.|
T Consensus 135 ~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~KtGWkLn~EWnA------~~Ee~~v------~~~~-~e~IPF~C~i 201 (259)
T COG5152 135 EVIDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKLNQEWNA------EYEEAPV------ISGP-GEKIPFLCGI 201 (259)
T ss_pred ceeecCcccccchhhcccccCCchhhhhhhhhhhhcccccchhhcc------hhhhccc------ccCC-CCCCceeehh
Confidence 4566778888877777775 45677788889999999999987762 2222211 1111 2234679999
Q ss_pred ccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHH
Q 012162 183 CLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQ 239 (469)
Q Consensus 183 c~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~ 239 (469)
|...+..||.+.|||.||..|.-.-+..+..|-+|.+.... .+.+...+..++.
T Consensus 202 CKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G---~f~V~~d~~kmL~ 255 (259)
T COG5152 202 CKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG---RFWVVSDLQKMLN 255 (259)
T ss_pred chhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhcc---ceeHHhhHHHHHh
Confidence 99999999999999999999999999999999999988753 3555555555554
No 123
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.48 E-value=1.1e-07 Score=93.73 Aligned_cols=69 Identities=19% Similarity=0.060 Sum_probs=66.2
Q ss_pred CCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHH---HHHHHHHHHHHh
Q 012162 51 IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS---HLLKANALILLE 127 (469)
Q Consensus 51 ~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~---~~~~g~~~~~~~ 127 (469)
.+|+++.+|+|+|.+|+.+|+| ++|+..+++|++++|++..+ |+++|.+|..+|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGry-----------------------eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG 126 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRV-----------------------KDALAQFETALELNPNPDEAQAAYYNKACCHAYRE 126 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC
Confidence 5788999999999999999999 99999999999999999865 999999999999
Q ss_pred HHHHHHHHHhccccC
Q 012162 128 RYDMARDAILSGLQV 142 (469)
Q Consensus 128 ~~~~A~~~~~~al~~ 142 (469)
++++|+++|++|+++
T Consensus 127 r~dEAla~LrrALel 141 (453)
T PLN03098 127 EGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999997
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=3.9e-07 Score=83.08 Aligned_cols=107 Identities=20% Similarity=0.237 Sum_probs=95.9
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHH
Q 012162 26 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 105 (469)
Q Consensus 26 ~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 105 (469)
...+..+...|+-+.+.....++....|.+..++...|...++.|+| ..|+..+.++
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~-----------------------~~A~~~~rkA 126 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNF-----------------------GEAVSVLRKA 126 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcch-----------------------HHHHHHHHHH
Confidence 44566777778888888888888888888888887788999999999 9999999999
Q ss_pred hhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 106 LNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 106 l~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
..++|+++++|..+|.+|.++|++++|...|.+++++.|+++.+..++..
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 99999999999999999999999999999999999999999988777644
No 125
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.46 E-value=1e-06 Score=80.45 Aligned_cols=112 Identities=19% Similarity=0.174 Sum_probs=91.2
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
.+..+...|..++..|+|.+|+..|++.+...|..+ .+.+.+|.++++.|+| ..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y-----------------------~~ 60 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY-----------------------EE 60 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H-----------------------HH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 467889999999999999999999999999988764 7788999999999999 99
Q ss_pred HHHHHHHHhhccccch---HHHHHHHHHHHHHhH-----------HHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 98 ALKDAEKLLNLQSNSM---KSHLLKANALILLER-----------YDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 98 A~~~~~~al~l~p~~~---~~~~~~g~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
|+..+++.++..|+++ .+++.+|.+++...+ ..+|+..|+..+..-|++.-+......
T Consensus 61 A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 61 AIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp HHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 9999999999998875 589999999876543 458999999999999998866544433
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.46 E-value=7.3e-07 Score=83.51 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=94.7
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccc---cchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVL---GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
..+..+...|..++..|+|++|+..|++++...|..+.+. +++|.+|+++++| .
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y-----------------------~ 86 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-----------------------P 86 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH-----------------------H
Confidence 3577788999999999999999999999999999987554 8899999999999 9
Q ss_pred HHHHHHHHHhhccccch---HHHHHHHHHHHHHh------------------HHHHHHHHHhccccCCCCCchhHHHHH
Q 012162 97 LALKDAEKLLNLQSNSM---KSHLLKANALILLE------------------RYDMARDAILSGLQVDPFSNPLQASLQ 154 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~---~~~~~~g~~~~~~~------------------~~~~A~~~~~~al~~~p~~~~~~~~~~ 154 (469)
+|+..+++.+++.|+++ .++|.+|.++..++ .-.+|+..|++.++.-|+..-+.....
T Consensus 87 ~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~ 165 (243)
T PRK10866 87 LAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATK 165 (243)
T ss_pred HHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence 99999999999998774 57899998865443 235788999999999998875544443
No 127
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=8.3e-08 Score=86.72 Aligned_cols=49 Identities=45% Similarity=0.940 Sum_probs=42.4
Q ss_pred ccccccccccccccccEEccCCCcccHHHHHH-HcccCC-Ccccccccccc
Q 012162 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQ-SMDRGN-KCPLCRAVLFI 223 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~-~~~~~~-~CP~Cr~~~~~ 223 (469)
.-++.|.+|++....|+.++|||.||..||.. |..+.. .||+||+..+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 45889999999999999999999999999999 655544 59999998743
No 128
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.45 E-value=4.2e-07 Score=89.78 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=66.0
Q ss_pred hhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCccc---ccchhHHHHHHHhhhccCCCCCcccCccCCCCCc
Q 012162 16 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIV---LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
......+..+.+.|..++..|+|++|+..|++||+++|+++.+ |+|+|.+|..+|++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~-------------------- 128 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG-------------------- 128 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH--------------------
Confidence 3556678999999999999999999999999999999999855 99999999999999
Q ss_pred hhHHHHHHHHHHHhhcc
Q 012162 93 THAELALKDAEKLLNLQ 109 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~ 109 (469)
++|+.++++|+++.
T Consensus 129 ---dEAla~LrrALels 142 (453)
T PLN03098 129 ---KKAADCLRTALRDY 142 (453)
T ss_pred ---HHHHHHHHHHHHhc
Confidence 99999999999983
No 129
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.45 E-value=6.4e-07 Score=99.45 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=66.1
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHH
Q 012162 26 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 105 (469)
Q Consensus 26 ~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 105 (469)
...|..+...|++++|+..|+++++..|.++.+|..+|.+|...|++ ++|+..++++
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~~~~~ 627 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL-----------------------NKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHH
Confidence 34455555556666666666666666666666666666666666666 6666666666
Q ss_pred hhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 106 LNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 106 l~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+...+..+
T Consensus 628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 666666666666666666666666666666666666666665554444433
No 130
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.7e-07 Score=88.43 Aligned_cols=115 Identities=23% Similarity=0.201 Sum_probs=99.4
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 107 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 107 (469)
.|..+...+++.-|-.+|.+|+.+.|.+|-.+..+|.+.+..+.| .+|+..++.++.
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y-----------------------~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEY-----------------------PEALKYFQKALE 442 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhh-----------------------HHHHHHHHHHHH
Confidence 577788889999999999999999999999999999999999999 999999999983
Q ss_pred c----c---ccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 108 L----Q---SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 108 l----~---p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
. . +.+...+.++|.++.++++|++|+..|+++|.+.|.+..++..+.-+.-.+++...
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 2 2 23556789999999999999999999999999999999998888777766665543
No 131
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=5e-07 Score=90.39 Aligned_cols=135 Identities=16% Similarity=0.075 Sum_probs=100.8
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHH----------HhhhccCCCCCcccCcc
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI----------SQFLKHRPPSASEYRPL 86 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~~ 86 (469)
++..++++|...|......++=..||..+.++++++|+|..++..+|..|... .+|+... ++..|...
T Consensus 314 qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~~l~~ 391 (579)
T KOG1125|consen 314 QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKYVHLVS 391 (579)
T ss_pred hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccchhccc
Confidence 44567899999999999999999999999999999999999999999887643 4453221 11112211
Q ss_pred C----------CCCCchhHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHH
Q 012162 87 N----------GLDPTTHAELALKDAEKLLNLQS--NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 87 ~----------~~~~~~~~~~A~~~~~~al~l~p--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
. +.........-.+.|-.|....| .+++.+..||..|...|+|++|++.|+.||..+|+|..+++.+
T Consensus 392 a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 392 AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 1 11223333455566666777777 7888999999999999999999999999999999988777665
No 132
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.44 E-value=1.2e-06 Score=90.83 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=77.7
Q ss_pred hhhHHHHHHhHHHHHHhcc---HHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCC----CCCcccCcc-----
Q 012162 19 YTHVFDLVQKGNRAFRESN---FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRP----PSASEYRPL----- 86 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~---~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~----- 86 (469)
...+..++.+|..++..++ +.+|+.+|++|++++|+++.+|..++.+|.....|..... .+....+..
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 3467888899998886655 8899999999999999999999999998877655510000 000000000
Q ss_pred CCCCC------------chhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 87 NGLDP------------TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 87 ~~~~~------------~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
...++ ....++|...+++|++++|+ ..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 00000 11124555555666666653 455566666666666666666666666666665553
No 133
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.2e-07 Score=93.41 Aligned_cols=47 Identities=36% Similarity=0.992 Sum_probs=41.7
Q ss_pred ccccccccccccccEEccCCCcccHHHHHHHcccC-----CCcccccccccc
Q 012162 177 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG-----NKCPLCRAVLFI 223 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~-----~~CP~Cr~~~~~ 223 (469)
...||||+....-|+.+.|||.||..||.++|..+ ..||.|+..++.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67999999999999999999999999999988754 369999998854
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.42 E-value=6.5e-07 Score=88.91 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=78.5
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++..+..+|..++..|+|++|+..+++|++++|+++.+|+++|.+|+.+|+| ++|+.
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~-----------------------~eA~~ 91 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY-----------------------QTAKA 91 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 3677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLE 127 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~ 127 (469)
.++++++++|+++.++..++.+...+.
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888866653
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=3.5e-07 Score=84.92 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=77.7
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++-.|-++|.+|.+.|.|+.|++....||.+||....+|..+|.+|+.+|+| .+|+.
T Consensus 114 nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~-----------------------~~A~~ 170 (304)
T KOG0553|consen 114 NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY-----------------------EEAIE 170 (304)
T ss_pred cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH-----------------------HHHHH
Confidence 3566778999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYD 130 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~ 130 (469)
.|++||+++|+|....-.+..+-..+++..
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999877777766665555544
No 136
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.40 E-value=1e-06 Score=95.70 Aligned_cols=110 Identities=13% Similarity=-0.004 Sum_probs=77.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+......|...++.|+|..|+..|.++++.+|+++.+...++.++...|++ ++|+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~-----------------------~~A~~ 89 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRD-----------------------QEVID 89 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCc-----------------------HHHHH
Confidence 4566788899999999999999999999999999864433666777777777 67777
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
.+++++.-+|.+..++..+|.++...|+|++|++.|+++++.+|+|+.+...+
T Consensus 90 ~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 90 VYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 77777633333333444445566666777777777777777777766655443
No 137
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.40 E-value=1.1e-06 Score=72.30 Aligned_cols=96 Identities=23% Similarity=0.111 Sum_probs=86.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+++.|..+-..|+.++|+.+|++|+....+. ..++.++|.++..+|++ ++|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~-----------------------deA~ 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY-----------------------DEAL 58 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 356788999999999999999999999986554 46888999999999999 9999
Q ss_pred HHHHHHhhcccc---chHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 100 KDAEKLLNLQSN---SMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 100 ~~~~~al~l~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
..+++++.-.|+ +......++.++...|++++|+..+-.++.
T Consensus 59 ~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 59 ALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999888 888888999999999999999999998875
No 138
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=9e-07 Score=90.75 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=97.7
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 107 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 107 (469)
.|...+..++|++|..+++.+++++|-....|+++|.|..+++++ +.|.++|.+++.
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~-----------------------q~av~aF~rcvt 547 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE-----------------------QAAVKAFHRCVT 547 (777)
T ss_pred hccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh-----------------------HHHHHHHHHHhh
Confidence 344456679999999999999999999999999999999999999 999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 108 LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 108 l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
++|++..+|.+++.+|..+|+-.+|...+++|++-+-++-.++++..-+-..+
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 99999999999999999999999999999999999987776666554444433
No 139
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.36 E-value=2.8e-07 Score=59.55 Aligned_cols=38 Identities=47% Similarity=1.315 Sum_probs=33.8
Q ss_pred cccccccccccEEccCCCcccHHHHHHHcc-cCCCcccc
Q 012162 180 CTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLC 217 (469)
Q Consensus 180 C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~-~~~~CP~C 217 (469)
|+||.+....++.++|||.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988999999999999999999987 44579987
No 140
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.2e-07 Score=91.35 Aligned_cols=65 Identities=32% Similarity=0.813 Sum_probs=54.3
Q ss_pred CccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhc
Q 012162 174 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 242 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~ 242 (469)
..+.+.|+||++.|.+|++++|||+||+.|+..++.....||.||. .. . .+..|..+.++++.+-
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~-~--~~~~n~~l~~~~~~~~ 74 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PS-R--NLRPNVLLANLVERLR 74 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-ch-h--ccCccHHHHHHHHHHH
Confidence 4477899999999999988999999999999998884458999996 32 1 5668888888888753
No 141
>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]
Probab=98.34 E-value=5.1e-07 Score=84.50 Aligned_cols=211 Identities=16% Similarity=0.161 Sum_probs=130.4
Q ss_pred ccCCCccceeee--ccCCCCccCcccCchHHHHHHHHHHhC--CceeEEEEeCCCCCccccccceEEEEEeeecCC--c-
Q 012162 259 FGVDLMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEG--NHRMGMVIIDPTTGSVADFACEVEITECEPLPD--G- 331 (469)
Q Consensus 259 ~~~~~lPl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~G~~~~I~~~~~~~d--g- 331 (469)
.....+|+++.. |+|||.++|+.+..|+-+.+++..... ++.|.+.+.....+....-+|.++|.....-.| |
T Consensus 61 ~t~~~~p~~~~~~~v~~PgqtLPl~~i~~~~~s~~r~lvs~ar~~~F~vl~r~~v~~re~~r~tt~evd~~R~p~d~Fgn 140 (371)
T KOG1400|consen 61 DTTNWIPICGQVMAVLFPGQTLPLKFIDPQERSIVRRLVSSARDNGFVVLFRSDVPERESLRYTTTEVDAYRVPQDNFGN 140 (371)
T ss_pred CceeeecccCceeeEecCcccCcchhcCHHHHHHHHHHHHhhcCCceEEEecccchHHhhccccceeccccccchhhhhh
Confidence 444568999965 899999999999999888888877765 566766665433344445566666653211112 3
Q ss_pred -eEEEEEEeccceEEeeee-ccCCeeEEEEEEecCCCC----CC---------------------------cchhhhHHH
Q 012162 332 -RFVLEIESRRRFRILRSW-DQDGYRVAEIEWVQDIHP----EG---------------------------VEDRADLQD 378 (469)
Q Consensus 332 -~~~v~~~g~~R~~i~~~~-~~~~~~~a~ve~~~d~~~----~~---------------------------~~~~~~l~~ 378 (469)
-.++...|..|++++++. +..|--.|+|+.+|+... +. .+.+.-..+
T Consensus 141 ~l~~~~~~G~y~~~vl~lR~qs~g~~e~~~qL~P~~~i~~~~~Sf~~~~avq~~~~n~~~ia~~~n~~p~s~e~dm~sla 220 (371)
T KOG1400|consen 141 ALSMVKAMGRYRCKVLKLRTQSLGRGEAEVQLLPDVEIPCLLPSFIPKSAVQLPAHNKCSIATRINGYPFSAERDMTSLA 220 (371)
T ss_pred hhhhhhhhcccccceeeecccCCCcccceEEeccccccccccccccchhhheecccCcceeccCCCCCccccccchhhhh
Confidence 345566899999999986 455666778887774210 00 000000000
Q ss_pred HHHHHHH----------HHHHHHHHHHH---HHHHhHHHHHHhhhhhcCCCCCCCcchhHHHHHhcCCCChhHhhhhccC
Q 012162 379 LTNNAAE----------YARLWLRREKE---SARQDRRRLEKLLNVEVMMPPSQDPERFSFWLATLSDRRPSERLELLRI 445 (469)
Q Consensus 379 l~~~l~~----------~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~p~~l~~~ia~~l~l~~~~kq~lLe~ 445 (469)
..+.+.. ....|.....+ ++.....+...|.+....-..+..|..|++++|+.+++...-++.||.+
T Consensus 221 ~f~~i~sls~~h~~~ll~~~~was~tyqSy~la~rivenarl~yE~lk~ds~~~kpivlSf~~a~kihv~e~~~~hL~~~ 300 (371)
T KOG1400|consen 221 VFRQIGSLSGFHGDDLLSWPKWASLTYQSYFLAKRIVENARLWYELLKEDSAPGKPIVLSFKYAWKIHVCERCREHLLWE 300 (371)
T ss_pred hheehhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHhccccccCCCceEeehhhhhhhhhhHHHHHHHHhh
Confidence 0000000 01111111111 1111111222344443322356789999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhccccCC
Q 012162 446 RDTRERIRRGLIFLRAEEQGCRLQ 469 (469)
Q Consensus 446 ~~~~eRl~~l~~~l~~~~~~~~~~ 469 (469)
.++.-|+...+..++++...||++
T Consensus 301 g~v~tRlq~e~~~~~k~ti~fCk~ 324 (371)
T KOG1400|consen 301 GSVMTRLQREFFGIQKETITFCKE 324 (371)
T ss_pred cccccchheeeecccchhhhhhHh
Confidence 999999999999999998777753
No 142
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.34 E-value=2.6e-06 Score=89.89 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=101.9
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC-cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
..++..++.+|..+|.+|||..|+.+|.+|+.++|.- ++....+|.|+.++++- +.
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~-----------------------~~ 217 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMS-----------------------EK 217 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccch-----------------------hh
Confidence 3457889999999999999999999999999999974 57888999999999998 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHH---HhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALIL---LERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
|+..+++|++++|.+..++..+|.+-.. ...|..|+..+.++...+|+|+.+...++.
T Consensus 218 a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn 278 (1018)
T KOG2002|consen 218 ALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLAN 278 (1018)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 9999999999999999999999987654 455788999999999999999998777654
No 143
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.34 E-value=7.4e-07 Score=85.72 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=71.9
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCC--CCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIK--PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
..+......+...|+++++...+.++.... +.++..|..+|.++.+.|++ ++|+.
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~-----------------------~~A~~ 167 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP-----------------------DKALR 167 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH-----------------------HHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 334445556667777777777777766544 55667777777777777777 77788
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
.++++++++|+++.+...++.++...|+++++...++...+..|+|+.+...+..+...++
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence 8888888888777777777777777777777777776666666666666555544444443
No 144
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.34 E-value=4.2e-06 Score=88.39 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=102.3
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC-cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
..++.++..|..+..+|||++|..+|.++++.+|++ .-.++++|+.|++.|++ ..|
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl-----------------------e~s 361 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL-----------------------EES 361 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH-----------------------HHH
Confidence 456778999999999999999999999999999998 67889999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHh----HHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLE----RYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
...|+++++..|++.+....+|..|...+ .-+.|.....++++..|.|.+++-.++.
T Consensus 362 ~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 362 KFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred HHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 99999999999999999999999998876 6788999999999999998877655544
No 145
>PRK11906 transcriptional regulator; Provisional
Probab=98.33 E-value=1e-06 Score=87.28 Aligned_cols=92 Identities=16% Similarity=0.031 Sum_probs=86.0
Q ss_pred hccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchH
Q 012162 35 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 114 (469)
Q Consensus 35 ~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 114 (469)
..+-.+|..+..+|++++|+|+.++..+|.++...+++ +.|+..+++|+.++|+++.
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~-----------------------~~a~~~f~rA~~L~Pn~A~ 373 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA-----------------------KVSHILFEQAKIHSTDIAS 373 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch-----------------------hhHHHHHHHHhhcCCccHH
Confidence 34567899999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 115 SHLLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 115 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
+|+..|.+....|+.++|+..+++|++++|.-..+
T Consensus 374 ~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 374 LYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 99999999999999999999999999999976543
No 146
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.3e-07 Score=88.76 Aligned_cols=70 Identities=33% Similarity=0.776 Sum_probs=58.6
Q ss_pred CccccccccccccccccEEc-cCCCcccHHHHHHHcccC-CCccccccccccCCCcccCcccHHHHHHHhchH
Q 012162 174 RTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 244 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~~-~cgh~~C~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (469)
....+.|+||+.++....++ .|+|.||..||...+..+ +.||.||+.+.. .+.+.++.....++.+.++.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S-krsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS-KRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc-cccCCCCccHHHHHHHHhcc
Confidence 34578999999999999876 799999999999988755 589999999853 36788888888888887766
No 147
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=2.2e-06 Score=80.15 Aligned_cols=103 Identities=8% Similarity=0.007 Sum_probs=83.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
|.-+-..+..+....++++|+..+.+|++.+|+...+-.-+|.+++..|+| ++|++.
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y-----------------------~~AV~~ 236 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY-----------------------QKAVEA 236 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch-----------------------HHHHHH
Confidence 455567777777788888888888888888888888888888888888888 888888
Q ss_pred HHHHhhccccc-hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 102 AEKLLNLQSNS-MKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 102 ~~~al~l~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
++.+++.||++ +.+.-.+..+|..+|+.++.+..+.++.+..++..
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 88888888876 45677778888888888888888888888776654
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=4.4e-06 Score=75.79 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=99.5
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHH
Q 012162 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 104 (469)
Q Consensus 25 ~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 104 (469)
...+|..+-..|+|++|+++|+..++-||.|..+|-..-.+...+|+- -+|++.+..
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~-----------------------l~aIk~ln~ 145 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN-----------------------LEAIKELNE 145 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc-----------------------HHHHHHHHH
Confidence 345677888889999999999999999999999888766677777877 899999999
Q ss_pred HhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 105 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 105 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
.++.-+++.++|..++.+|...|+|++|.-.|++.+-++|.++.....+..+.=.+
T Consensus 146 YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 146 YLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877776654433
No 149
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4.6e-06 Score=80.78 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=90.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+.+.+..+.+.++|.+|+...+++|.++|+|..+++.+|.|+..+++| +.|..+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~-----------------------~~A~~d 313 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEY-----------------------DLARDD 313 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH-----------------------HHHHHH
Confidence 345567888999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHH-HHHHhccccCCCC
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMA-RDAILSGLQVDPF 145 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A-~~~~~~al~~~p~ 145 (469)
+++|++++|+|-.+...+..+.....++.+. .+.|.+.+..-+.
T Consensus 314 f~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 314 FQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999888887777665 7888888876553
No 150
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.30 E-value=2.5e-06 Score=92.72 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=81.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+...|..+...|+|++|++.|+++++.+|+++.++..++.+|...+++ ++|+..+
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~-----------------------~eAl~~l 159 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG-----------------------GVVLKQA 159 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH-----------------------HHHHHHH
Confidence 34444567777888888888888888888888888888888888888888 8888888
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHH
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 154 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 154 (469)
++++..+|.+... ..++.++...+++.+|+..|+++++.+|++.++...+-
T Consensus 160 ~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~ 210 (822)
T PRK14574 160 TELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHL 210 (822)
T ss_pred HHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8888888875443 44555555567776688888888888888877654443
No 151
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.28 E-value=2.5e-06 Score=84.88 Aligned_cols=101 Identities=12% Similarity=0.009 Sum_probs=86.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..+...|++++|+..|+++++++|+++.++..+|.+|+..|++ ++|+..
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~-----------------------~eA~~~ 170 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF-----------------------KEGIAF 170 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 455557788889999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccch----HHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 102 AEKLLNLQSNSM----KSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 102 ~~~al~l~p~~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
+++++...|..+ ..|..+|.++...|++++|+..|++++...|.
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 999999876433 34667899999999999999999998776663
No 152
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=3.3e-06 Score=91.18 Aligned_cols=141 Identities=9% Similarity=-0.086 Sum_probs=107.4
Q ss_pred ecccCCCCCChhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCc
Q 012162 6 QANEGEGSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRP 85 (469)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 85 (469)
+.....++.++.. ..++...+..+...+++++|+...+.+++..|+...+|+..|..+++.+++ .+++.. .
T Consensus 18 ~~r~~~~~~~p~n---~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~---~~~~lv---~ 88 (906)
T PRK14720 18 WTRADANNYSLSK---FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPL---NDSNLL---N 88 (906)
T ss_pred hhhcccccCCcch---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcch---hhhhhh---h
Confidence 3333344444443 567777788888999999999999999999999999999999999888876 111111 2
Q ss_pred cCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 86 LNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 86 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
+.+.-+......++.++...+...+++-.|++.+|.+|..+|++++|.+.|+++++++|+|+.+.+.++-
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY 158 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLAT 158 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 2222222222466777777777778888999999999999999999999999999999999987666543
No 153
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=3.5e-06 Score=83.42 Aligned_cols=128 Identities=27% Similarity=0.273 Sum_probs=109.7
Q ss_pred hhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 16 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
.+....++.++..|+..|-.+....|+.+|.+++...|....+|.++|.++++-+ |. .+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk-W~-------------------~d~ 427 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK-WR-------------------GDS 427 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh-cc-------------------ccH
Confidence 3556668888999999999999999999999999999999999999999997653 31 112
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
-.|+.++..|++++|...+||++++.++..++++.+|++....+....|.+.........+.+.++..
T Consensus 428 ~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa 495 (758)
T KOG1310|consen 428 YLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISAA 495 (758)
T ss_pred HHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHHH
Confidence 68999999999999999999999999999999999999999988888998877777776666665554
No 154
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.19 E-value=6e-06 Score=83.80 Aligned_cols=118 Identities=11% Similarity=0.044 Sum_probs=108.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..++.++...|..++|.+.++..+..++-.|.+++.+...|..+..+|+- ++|....
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~-----------------------~ea~~~v 64 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK-----------------------EEAYELV 64 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch-----------------------HHHHHHH
Confidence 45778888999999999999999999999999999999999999999998 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
..+++.|+.+.-.|..+|.++..-++|++|+.+|+.|+.++|+|..+...++-++..+...
T Consensus 65 r~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 65 RLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred HHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988888877766654
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.18 E-value=9.2e-06 Score=62.52 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=70.6
Q ss_pred cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHh
Q 012162 58 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 137 (469)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 137 (469)
+++++|.++...|++ .+|+..++++++..|++..+++.+|.++...|++++|+..|+
T Consensus 2 ~~~~~a~~~~~~~~~-----------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 58 (100)
T cd00189 2 ALLNLGNLYYKLGDY-----------------------DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYE 58 (100)
T ss_pred HHHHHHHHHHHHhcH-----------------------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999 999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhHHHHHHHHHhh
Q 012162 138 SGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 138 ~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
+++...|.+..+...+..+....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 59 KALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHhCCCcchhHHHHHHHHHHHH
Confidence 99999999886665555544433
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.18 E-value=2.4e-06 Score=75.43 Aligned_cols=109 Identities=11% Similarity=0.055 Sum_probs=90.9
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCC--cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHh
Q 012162 29 GNRAFRESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 106 (469)
Q Consensus 29 g~~~~~~~~~~~A~~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 106 (469)
.+.+|-.++|..+...+...++.++.+ ...|+++|.++..+|++ ++|+..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~-----------------------~~A~~~~~~al 62 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEY-----------------------AEALQNYYEAM 62 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHH
Confidence 345666677888888887776776665 56779999999999999 99999999999
Q ss_pred hccccc---hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 107 NLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 107 ~l~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
.+.|+. +.+|+++|.++...|++++|+..|+++++++|.+......+..+...+
T Consensus 63 ~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 63 RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 997763 458999999999999999999999999999999888776666655533
No 157
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.15 E-value=1.8e-06 Score=64.50 Aligned_cols=40 Identities=45% Similarity=1.064 Sum_probs=33.1
Q ss_pred ccccccccccc------------cE-EccCCCcccHHHHHHHcccCCCccccc
Q 012162 179 DCTLCLKLLYE------------PI-TTPCGHSFCRSCLFQSMDRGNKCPLCR 218 (469)
Q Consensus 179 ~C~ic~~~~~~------------p~-~~~cgh~~C~~Ci~~~~~~~~~CP~Cr 218 (469)
.|.||+..+.+ ++ ..+|||.|...||.+|+.....||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 49999998833 23 358999999999999999988999997
No 158
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=2e-05 Score=71.54 Aligned_cols=120 Identities=18% Similarity=0.044 Sum_probs=101.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...++.+-.....+|...+||+.....++.-++|+++|..+|.+|+..|+| ++|.-.
T Consensus 120 ~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f-----------------------~kA~fC 176 (289)
T KOG3060|consen 120 TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF-----------------------EKAAFC 176 (289)
T ss_pred hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH-----------------------HHHHHH
Confidence 344555556666778889999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHH---hHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhh
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILL---ERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 164 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 164 (469)
+++.+=++|-++..+.++|.+++-. .+++-|..+|.++++++|.+..+..++-..-..+.+..
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~s 242 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQIS 242 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754 46788999999999999987777666655555555433
No 159
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=1.1e-05 Score=80.31 Aligned_cols=90 Identities=22% Similarity=0.190 Sum_probs=55.6
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 107 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 107 (469)
.+..++..++-.+|+..+.++++..|.++.++...|..++..+++ +.|+..+++++.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~-----------------------~lAL~iAk~av~ 262 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY-----------------------ELALEIAKKAVE 262 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHH
Confidence 344555555556666666666666666666666666666666666 666666666666
Q ss_pred ccccchHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012162 108 LQSNSMKSHLLKANALILLERYDMARDAILSGL 140 (469)
Q Consensus 108 l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 140 (469)
+.|++...|+.+|.+|..+|+|+.|+..+..+-
T Consensus 263 lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 263 LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666666666666666665555443
No 160
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=2.3e-06 Score=80.63 Aligned_cols=46 Identities=35% Similarity=0.775 Sum_probs=35.8
Q ss_pred ccccccccc-cccccE----EccCCCcccHHHHHHHcccC-CCccccccccc
Q 012162 177 DFDCTLCLK-LLYEPI----TTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 222 (469)
Q Consensus 177 ~~~C~ic~~-~~~~p~----~~~cgh~~C~~Ci~~~~~~~-~~CP~Cr~~~~ 222 (469)
+..||+|.. .+.+|- +.+|||+||..|+...+..+ ..||.|+.++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 457999997 355663 23799999999999977544 47999999874
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.11 E-value=1e-05 Score=83.81 Aligned_cols=86 Identities=12% Similarity=-0.038 Sum_probs=69.2
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+...|..+...|++++|...|++|++++| +..+|..+|.++...|++ ++|+..+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~-----------------------~eA~~~~ 476 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN-----------------------RLAADAY 476 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 4455667778889999999999999999999 578999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHH-HHHHHHHhHHHHH
Q 012162 103 EKLLNLQSNSMKSHLLK-ANALILLERYDMA 132 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~-g~~~~~~~~~~~A 132 (469)
++|+.++|.++..|.-. +..|..+....-|
T Consensus 477 ~~A~~L~P~~pt~~~~~~~~f~~~~~~~~~~ 507 (517)
T PRK10153 477 STAFNLRPGENTLYWIENLVFQTSVETVVPY 507 (517)
T ss_pred HHHHhcCCCCchHHHHHhccccccHHHHHHH
Confidence 99999999998644332 2233444544433
No 162
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.10 E-value=1.9e-05 Score=82.97 Aligned_cols=97 Identities=21% Similarity=0.186 Sum_probs=84.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...|+..|....+.|++.+|+-+|++||+.+|.+....+.++..|.++|++ ..|+.-
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~-----------------------~~Am~~ 263 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL-----------------------KRAMET 263 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH-----------------------HHHHHH
Confidence 367778888888999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccc----cchHH-HHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 102 AEKLLNLQS----NSMKS-HLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 102 ~~~al~l~p----~~~~~-~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
+.+++.++| ..... -+..+..+...++-+.|++.++.++.
T Consensus 264 f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 264 FLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999 22223 33447777888888999999999998
No 163
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.08 E-value=1.3e-05 Score=81.51 Aligned_cols=118 Identities=10% Similarity=-0.067 Sum_probs=92.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccc--cchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVL--GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
+.......|..+...|++++|+..++++++..|++.... ..+....+..++. ..+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~-----------------------~~~ 318 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN-----------------------EKL 318 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh-----------------------HHH
Confidence 566777888999999999999999999999999987532 1111112222333 788
Q ss_pred HHHHHHHhhccccch--HHHHHHHHHHHHHhHHHHHHHHHh--ccccCCCCCchhHHHHHHHHHhhhh
Q 012162 99 LKDAEKLLNLQSNSM--KSHLLKANALILLERYDMARDAIL--SGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 99 ~~~~~~al~l~p~~~--~~~~~~g~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
++.++++++.+|+++ ..+..+|.+++..|+|++|.++|+ ++++.+|++.... .+..+-..+++
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~ 385 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGD 385 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCC
Confidence 999999999999999 888899999999999999999999 6888999877644 55555554444
No 164
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.08 E-value=1.3e-06 Score=66.43 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=56.1
Q ss_pred CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcc-------ccchHHHHHHHHHHHHHh
Q 012162 55 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-------SNSMKSHLLKANALILLE 127 (469)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-------p~~~~~~~~~g~~~~~~~ 127 (469)
-+.++.++|.+|..+|+| ++|+..+++++++. |....+++++|.++..+|
T Consensus 4 ~a~~~~~la~~~~~~~~~-----------------------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g 60 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRY-----------------------DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG 60 (78)
T ss_dssp HHHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC
Confidence 346788999999999999 99999999999762 334678999999999999
Q ss_pred HHHHHHHHHhccccC
Q 012162 128 RYDMARDAILSGLQV 142 (469)
Q Consensus 128 ~~~~A~~~~~~al~~ 142 (469)
++++|+.+|++++++
T Consensus 61 ~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 61 DYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999865
No 165
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.07 E-value=1.2e-05 Score=79.96 Aligned_cols=116 Identities=13% Similarity=0.044 Sum_probs=80.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
.+....+|..++..|++++|+..++++++.+|++..++.. +..+..++++.+.. ..+...
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~-------------------~~~~~~ 102 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMR-------------------DHVARV 102 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCc-------------------hhHHHH
Confidence 4556678999999999999999999999999999877766 66777777651111 222222
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
+......+|....++..+|.++...|++++|+..++++++++|++..+...+..+-
T Consensus 103 l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 103 LPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred HhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 22233455666666667777777777777777777777777777766555554443
No 166
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.5e-06 Score=79.76 Aligned_cols=106 Identities=22% Similarity=0.382 Sum_probs=76.2
Q ss_pred HhhccccchHHHHHHHHH-HHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhcccCCCCCCCccccccccc
Q 012162 105 LLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTLC 183 (469)
Q Consensus 105 al~l~p~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ic 183 (469)
.+...|+-.+-|-.-|.+ |.....|-.-..+|+.+++++-.+.... .. +..+ ......-.+.|-||
T Consensus 181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~DyK~GWqi~~e~d~~k-----------e~-~~~~-~~D~~~~Pf~c~ic 247 (313)
T KOG1813|consen 181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSDYKAGWQIEFEWDSAK-----------EK-KRVK-IEDIELLPFKCFIC 247 (313)
T ss_pred eeecCchhhhhhHhhCcccccchhhhhhhhhhccccceeehhhhccc-----------cc-ccee-cCCcccCCcccccc
Confidence 345567777766666653 3455566667788888888887666554 00 0011 11122245689999
Q ss_pred cccccccEEccCCCcccHHHHHHHcccCCCcccccccccc
Q 012162 184 LKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223 (469)
Q Consensus 184 ~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~ 223 (469)
...|.+||.+.|||.||..|....+..+..|++|.+.+..
T Consensus 248 r~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 248 RKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccchhhcCCceeehhhhccccccCCcceeccccccc
Confidence 9999999999999999999999999999999999998743
No 167
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.04 E-value=2.7e-05 Score=79.09 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=105.0
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
...++.....+|...+..|||+.|.+...++.+..|+....+...|.++...|++ +.
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~-----------------------~~ 136 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDE-----------------------AR 136 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCH-----------------------HH
Confidence 3446777888999999999999999999999999998877788889999999999 99
Q ss_pred HHHHHHHHhhccccch-HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 98 ALKDAEKLLNLQSNSM-KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 98 A~~~~~~al~l~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
|...+.++.+..|++. .+....+.++...|++++|+..+++.++.+|+++.+...+..+....++
T Consensus 137 A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 137 ANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999885 4555579999999999999999999999999999887776665554444
No 168
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.2e-06 Score=88.96 Aligned_cols=48 Identities=31% Similarity=0.816 Sum_probs=42.3
Q ss_pred ccccccccccccccccEEccCCCcccHHHHHHHcc-cCCCccccccccc
Q 012162 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLF 222 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~-~~~~CP~Cr~~~~ 222 (469)
...+.|+.|..-.++.|++.|||.||..|+...++ +...||.|+..|.
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 35679999999999999999999999999999886 5568999999873
No 169
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.01 E-value=2.5e-05 Score=74.29 Aligned_cols=97 Identities=22% Similarity=0.185 Sum_probs=69.1
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc------ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
..+...|++....+.|+++++.|+.|+++..++. .++..+|..|-++.++ +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~-----------------------~ 179 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY-----------------------E 179 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh-----------------------h
Confidence 5566789999999999999999999999865543 4566788888889998 7
Q ss_pred HHHHHHHHHhhcccc----------chHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 97 LALKDAEKLLNLQSN----------SMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 97 ~A~~~~~~al~l~p~----------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
+|+-...+|.++-.+ ...++|.++.+|..+|+.-+|+++.++|.++
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 777666666654321 1235566666666666666666666666544
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=8.1e-06 Score=72.41 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=77.5
Q ss_pred HHHHHhcCCC--CCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccc---hHHHHH
Q 012162 44 NYSRANNIKP--GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLL 118 (469)
Q Consensus 44 ~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~ 118 (469)
.+.+.+.+++ ..+.+++++|..+...|++ ++|+..+++++++.|+. ..+++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~~~~~~~~~~~~~~~ 77 (172)
T PRK02603 21 LILKILPINKKAKEAFVYYRDGMSAQADGEY-----------------------AEALENYEEALKLEEDPNDRSYILYN 77 (172)
T ss_pred HHHHHcccccHhhhHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHhhccchHHHHHHH
Confidence 3444444443 4567789999999999999 99999999999987764 468999
Q ss_pred HHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 119 KANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 119 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
+|.++..+|++++|+..|+++++.+|++......+..+...++
T Consensus 78 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 78 MGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999998877666655554443
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.4e-05 Score=73.26 Aligned_cols=97 Identities=22% Similarity=0.167 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHH
Q 012162 37 NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSH 116 (469)
Q Consensus 37 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 116 (469)
+.+..+.-.+.-+..+|+|..-|..+|.+|+.+|++ ..|...|.+|+++.|+++..+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~-----------------------~~A~~AY~~A~rL~g~n~~~~ 193 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRA-----------------------SDALLAYRNALRLAGDNPEIL 193 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcch-----------------------hHHHHHHHHHHHhCCCCHHHH
Confidence 456678888889999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHh---HHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 117 LLKANALILLE---RYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 117 ~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
..+|.+++... .-.+|...|++++++||+|..+...+...
T Consensus 194 ~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~ 236 (287)
T COG4235 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFA 236 (287)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999886543 34778999999999999999887776543
No 172
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.7e-06 Score=78.36 Aligned_cols=47 Identities=26% Similarity=0.621 Sum_probs=41.9
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHcccCC-Cccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~-~CP~Cr~~~~ 222 (469)
..-+|.||+.....||.++|+|.||.-||+.....+. .|++||.++.
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 3458999999999999999999999999999877665 5999999984
No 173
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.96 E-value=5.7e-06 Score=51.74 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=31.2
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARD 134 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 134 (469)
+++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999963
No 174
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=8e-06 Score=76.58 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=79.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC----------------------------------cccccchhHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD----------------------------------PIVLGNRSSAYI 67 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~----------------------------------~~~~~~~a~~~~ 67 (469)
+..+...+..+-..+++++|+++|..+++++|.+ +.++.|+|.|.+
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 3444455556666666666666666666666655 456666666666
Q ss_pred HHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 68 RISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS---NSMKSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
..+++ +-++..+++|+...- .-.+.||++|.+....|++.-|...|+-+|.-||
T Consensus 370 yaqQ~-----------------------D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 370 YAQQI-----------------------DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred hhcch-----------------------hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 66666 667777777766532 2355677777777777788888888888888788
Q ss_pred CCchhHHHHHHHHHhhhhh
Q 012162 145 FSNPLQASLQNLERTTASL 163 (469)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~ 163 (469)
++.++..++..++..-++.
T Consensus 427 ~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDI 445 (478)
T ss_pred chHHHHHhHHHHHhhcCch
Confidence 8888888877776654443
No 175
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.94 E-value=7e-06 Score=86.80 Aligned_cols=109 Identities=21% Similarity=0.126 Sum_probs=96.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
-..+..+|-.+...+++.+|+..|+-|++.+|++..+|..+|.+|...|+| ..|++.
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry-----------------------~~AlKv 618 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY-----------------------SHALKV 618 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce-----------------------ehHHHh
Confidence 355667899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
+.+|..++|.+..+.|..|.....+|+|.+|++.+...+......-..+.++
T Consensus 619 F~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gL 670 (1238)
T KOG1127|consen 619 FTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGL 670 (1238)
T ss_pred hhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999999999999999999998877654443333333
No 176
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=2.4e-05 Score=64.22 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=63.2
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHhHHHHH
Q 012162 56 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMA 132 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A 132 (469)
+..++.+|..+...|++ ++|+..+.++++.+|++ +.+++.+|.++...|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~-----------------------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 58 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDY-----------------------ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADA 58 (119)
T ss_pred cHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHH
Confidence 35678889999999999 99999999999999887 57899999999999999999
Q ss_pred HHHHhccccCCCCCc
Q 012162 133 RDAILSGLQVDPFSN 147 (469)
Q Consensus 133 ~~~~~~al~~~p~~~ 147 (469)
+..|++++..+|++.
T Consensus 59 ~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 59 AKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHHCCCCC
Confidence 999999999999864
No 177
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.91 E-value=6.1e-06 Score=58.00 Aligned_cols=42 Identities=29% Similarity=0.814 Sum_probs=29.8
Q ss_pred ccccccccccccccccEE-ccCCCcccHHHHHHHccc--CCCccc
Q 012162 175 TDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDR--GNKCPL 216 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~--~~~CP~ 216 (469)
...+.|||....|.+||. ..|||+|.+..|.+++.. ...||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 456799999999999987 599999999999999943 346998
No 178
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.90 E-value=2e-05 Score=83.54 Aligned_cols=140 Identities=13% Similarity=0.064 Sum_probs=103.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhcc-------CCCCCcc-------cCccC
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKH-------RPPSASE-------YRPLN 87 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~-------~~~~~ 87 (469)
+..+...|..|.+--|...|..+|++|.++|+.++.+....+..|....++... ...++.+ .+.++
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 556667788887777888899999999999999887777777666554433100 0000100 12222
Q ss_pred CCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 88 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
-..+..+ ..|+.+++.|++.+|++...|..+|.+|-..|+|..|++.|.+|..++|.+.-.+.....++..+++
T Consensus 572 yLea~n~-h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 572 YLEAHNL-HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK 645 (1238)
T ss_pred ccCccch-hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence 3333332 5799999999999999999999999999999999999999999999999988776666666555544
No 179
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.00011 Score=63.08 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=91.5
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
...+...+......+..+++..+...+++.++-.|+. ..+...+|.+++..|++
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~----------------------- 64 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDY----------------------- 64 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCH-----------------------
Confidence 4456777778888888999999999999999999988 46677789999999999
Q ss_pred HHHHHHHHHHhhccccc---hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
++|+..++.++...|+. +.+.+++|.++...|+|++|+..++.. .-.+..+.+...+..+-
T Consensus 65 ~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 65 DEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHH
Confidence 99999999999987665 458899999999999999999999763 22233333444444433
No 180
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.89 E-value=4.8e-05 Score=78.82 Aligned_cols=120 Identities=19% Similarity=0.088 Sum_probs=108.2
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+...|..+...++-++|..+..+|-.++|..+..|+.+|.++...|++ .+|...|
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~-----------------------~EA~~af 707 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL-----------------------EEAKEAF 707 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh-----------------------HHHHHHH
Confidence 33445666666777788899999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHH--HHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARD--AILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
..|+.+||+++.....+|.++...|+..-|.+ .+..++++||.|.+++..+..+-++.+....
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 99999999999999999999999998888877 9999999999999999999999888876543
No 181
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=3.3e-05 Score=72.50 Aligned_cols=114 Identities=18% Similarity=0.047 Sum_probs=103.9
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
+.....+.+...+.+|-+-.+...|+..|.+.++.-|.+...+...|.++-.++++ +
T Consensus 251 ~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~-----------------------~ 307 (478)
T KOG1129|consen 251 TQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ-----------------------E 307 (478)
T ss_pred hcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH-----------------------H
Confidence 34455677777888999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHH
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
+|++.++.+++++|.+.++..-.|.-|+--++.+-|+.+|++.|++.-.+++...++
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni 364 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI 364 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence 999999999999999999999999999999999999999999999988888776554
No 182
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=3.1e-05 Score=79.77 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=95.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...|+..|..+.+.++++.|...|.+++.++|++..+|+|++.+|+++++- .+|...
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k-----------------------~ra~~~ 575 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK-----------------------KRAFRK 575 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh-----------------------HHHHHH
Confidence 466788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
+.+|++.+-.++..|-+.-.+....|++++|+.+|.+.+.+.-+
T Consensus 576 l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999876543
No 183
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.85 E-value=9.5e-06 Score=50.75 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 113 MKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
+++|+++|.+|..+|++++|+..|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.85 E-value=0.00013 Score=67.00 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=94.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
-+..|.++|...++.|+|++|+..|+......|..+ .+...++.++++.++| ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y-----------------------~~ 89 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEY-----------------------DL 89 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccH-----------------------HH
Confidence 578999999999999999999999999999998876 5667788999999999 99
Q ss_pred HHHHHHHHhhccccchH---HHHHHHHHHHH--------HhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 98 ALKDAEKLLNLQSNSMK---SHLLKANALIL--------LERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~---~~~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
|+..+++-+.+.|+++. ++|.+|.+++. ..--.+|...|+..+..-|+..-+.....++.
T Consensus 90 A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~ 160 (254)
T COG4105 90 ALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV 160 (254)
T ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 99999999999987755 67888888754 33446788999999999999875544444433
No 185
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.85 E-value=1.2e-05 Score=60.97 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=56.6
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcC----CCC---CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNI----KPG---DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~----~p~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
.+..+...|..++..|+|++|+..|++|+++ .++ -+.++.++|.+|..+|++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~--------------------- 62 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY--------------------- 62 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH---------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH---------------------
Confidence 4677889999999999999999999999976 112 257889999999999999
Q ss_pred hHHHHHHHHHHHhhcc
Q 012162 94 HAELALKDAEKLLNLQ 109 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~ 109 (469)
++|+..+++++++.
T Consensus 63 --~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 63 --EEALEYYQKALDIF 76 (78)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhh
Confidence 99999999999864
No 186
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.85 E-value=8.2e-05 Score=75.28 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=60.7
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccch-hHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNR-SSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
++......|...+..|||++|.+...++-+..+ ++.+++.+ +.+..+.|++ +.|.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~-----------------------~~A~ 138 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDE-----------------------ARAN 138 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 455555666666666666666655555444322 23333333 3333555666 6666
Q ss_pred HHHHHHhhccccchHHH-HHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 100 KDAEKLLNLQSNSMKSH-LLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~-~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
..+.++.+.+|++..+. ...+.++...|++++|++.+++.++.+|+++.+...+..+
T Consensus 139 ~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~ 196 (398)
T PRK10747 139 QHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA 196 (398)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66666666666653332 2335566666666666666666666666666554444333
No 187
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.84 E-value=0.00011 Score=74.48 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=88.1
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccc-cchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHH
Q 012162 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVL-GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 103 (469)
Q Consensus 25 ~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 103 (469)
+...+..+...|+++.|..+|.+|.+.+|++..+. ...+..+...|++ ++|+..++
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~-----------------------~~Al~~l~ 177 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNEN-----------------------HAARHGVD 177 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCH-----------------------HHHHHHHH
Confidence 44556677999999999999999999999876443 2348899999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 104 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 104 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
++++.+|+++.++..++.+|...|++++|+..+.+..+..+.++.
T Consensus 178 ~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 178 KLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999999888888887776544
No 188
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=6.9e-05 Score=70.43 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC-chhHHHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS-NPLQASLQNLE 157 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~ 157 (469)
+.|...+.+|++-+|+...+-..+|.++...|+|+.|++.++++++.||+. +++...+..+-
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999875 33444443333
No 189
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.9e-05 Score=75.73 Aligned_cols=45 Identities=24% Similarity=0.621 Sum_probs=38.8
Q ss_pred ccccccccccccc---EEccCCCcccHHHHHHHcccC-CCccccccccc
Q 012162 178 FDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 222 (469)
Q Consensus 178 ~~C~ic~~~~~~p---~~~~cgh~~C~~Ci~~~~~~~-~~CP~Cr~~~~ 222 (469)
..|.||++.|..- ..+||+|.|...||..|+... ..||+|++.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 6999999988764 458999999999999999866 56999998763
No 190
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.76 E-value=2.3e-05 Score=48.90 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 113 MKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
+++++.+|.++..+|+|++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.75 E-value=2.2e-05 Score=52.37 Aligned_cols=43 Identities=23% Similarity=0.148 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 113 MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
|.+++.+|.+|..+|++++|++.|+++++.+|+|..++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4689999999999999999999999999999999998877654
No 192
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00017 Score=70.54 Aligned_cols=52 Identities=25% Similarity=0.206 Sum_probs=32.2
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhh
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 72 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 72 (469)
+++.+.+.++.|-...+..+||+.|.++..+-|++|.++..+|..|-+-|+-
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch
Confidence 3555556666666666666666666666666666666666666666555554
No 193
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.7e-05 Score=73.06 Aligned_cols=44 Identities=30% Similarity=0.819 Sum_probs=37.4
Q ss_pred ccccccccccccc---EEccCCCcccHHHHHHHcc-cCCCcccccccc
Q 012162 178 FDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVL 221 (469)
Q Consensus 178 ~~C~ic~~~~~~p---~~~~cgh~~C~~Ci~~~~~-~~~~CP~Cr~~~ 221 (469)
.+|.||+..+..- +.+||.|.|...|+.+|+. .+..||+||.++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 5899999866432 5689999999999999986 677999999876
No 194
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.72 E-value=0.0004 Score=70.92 Aligned_cols=144 Identities=22% Similarity=0.147 Sum_probs=100.3
Q ss_pred HHHHH-HhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHh------h-hccCCCCCcccCcc---CCCC
Q 012162 22 VFDLV-QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ------F-LKHRPPSASEYRPL---NGLD 90 (469)
Q Consensus 22 ~~~~~-~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~------~-~~~~~~~~~~~~~~---~~~~ 90 (469)
++.|+ --+..++..||...|...+.+|++.+|++-.+|..--...+...+ + -++...+.++.-++ ...-
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER 662 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence 34444 344667777888888888888888888876665432222111111 1 00111111110000 0000
Q ss_pred CchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 91 PTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 91 ~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
-....++|+..++++++.-|+..+.|..+|+++..+++.+.|.+.|..+++..|+...++-.+.+++++..+..+
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 122348999999999999999999999999999999999999999999999999999999999999998875544
No 195
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.70 E-value=4.7e-05 Score=77.92 Aligned_cols=99 Identities=13% Similarity=0.051 Sum_probs=86.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcC--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
.......|..|+.+|+|++|+..+.+|+++ .|.-.....++|..|..+++|
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~--------------------- 257 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY--------------------- 257 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH---------------------
Confidence 344455899999999999999999999998 555556666799999999999
Q ss_pred hHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 94 HAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 94 ~~~~A~~~~~~al~l--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
.+|+..|++|+++ +|....++.++|.+|...|+|++|..++++|+++-
T Consensus 258 --~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 258 --DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred --HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 9999999999985 46677799999999999999999999999998873
No 196
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2.4e-05 Score=73.91 Aligned_cols=49 Identities=33% Similarity=0.890 Sum_probs=41.7
Q ss_pred cccccccccccccccc-------------EEccCCCcccHHHHHHHcccCCCcccccccccc
Q 012162 175 TDDFDCTLCLKLLYEP-------------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p-------------~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~ 223 (469)
..+-.|.||.+-+.+| ..+||||-+.-.|+..|.++...||.||.++..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 4566899999875443 578999999999999999999999999999643
No 197
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.68 E-value=0.00022 Score=68.63 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=89.7
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHH--hhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS--QFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
+.+.....-..++..++++.|.+.+..+-+.+.+......--|++.+..| ++ .+|
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~-----------------------~~A 186 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKY-----------------------QDA 186 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCC-----------------------CHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhH-----------------------HHH
Confidence 34555556678889999999999999998887665444333344444455 35 889
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
...|++..+..+.++..+..+|.++..+|+|++|...+++|+..+|+++++..++..+...+++.
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 99999988887889999999999999999999999999999999999998877776666655544
No 198
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.68 E-value=6.2e-05 Score=77.03 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=88.3
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCC--------CCCcccccchhHHHHHHHhhhccCCCCCcccCccCCC
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIK--------PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGL 89 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (469)
...-+..+.+.|..|.+.|+|++|..++++|+++- |.-+..+.+.+.++..++++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~----------------- 341 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY----------------- 341 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch-----------------
Confidence 34457888999999999999999999999999873 23346778889999999999
Q ss_pred CCchhHHHHHHHHHHHhhcc--------ccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 90 DPTTHAELALKDAEKLLNLQ--------SNSMKSHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 90 ~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
++|...+.+++++- +.-++.+.++|..|..+|+|++|...|++|+.+.
T Consensus 342 ------Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 342 ------EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ------hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999998888752 3557789999999999999999999999999875
No 199
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0002 Score=62.92 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=66.3
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
+.-.|.++|.+..+.+.++.||...++||+++|.+-.++..||.+|-++..| ++|+.
T Consensus 133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~-----------------------eeale 189 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY-----------------------EEALE 189 (271)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH-----------------------HHHHH
Confidence 4556678999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHH
Q 012162 101 DAEKLLNLQSNSMKS 115 (469)
Q Consensus 101 ~~~~al~l~p~~~~~ 115 (469)
+|.+.++++|....+
T Consensus 190 DyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 190 DYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHhCcchHHH
Confidence 999999999987543
No 200
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.6e-05 Score=83.34 Aligned_cols=48 Identities=44% Similarity=0.917 Sum_probs=43.4
Q ss_pred ccccccccccccccc-----cEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 175 TDDFDCTLCLKLLYE-----PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~-----p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
..+..|+||.+.+.. |..++|||.||..|+..|+++...||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 346789999999998 788999999999999999999999999999654
No 201
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00015 Score=70.18 Aligned_cols=54 Identities=28% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
..|+...+++|+.+|++..+|..+|.++..+|+.++|+-+|+.|..+.|-+-+.
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 555555555555555555555555555555555555555555555555544433
No 202
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=7.5e-05 Score=68.07 Aligned_cols=51 Identities=29% Similarity=0.650 Sum_probs=42.2
Q ss_pred CCCCccccccccccccccccEEc-cCCCcccHHHHHHHcc--cCCCcccccccc
Q 012162 171 TPERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMD--RGNKCPLCRAVL 221 (469)
Q Consensus 171 ~~~~~~~~~C~ic~~~~~~p~~~-~cgh~~C~~Ci~~~~~--~~~~CP~Cr~~~ 221 (469)
........+|++|.+.-..|.+. +|||.||+.||..... .+..||.|+...
T Consensus 233 ss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred cccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 34456777999999999999776 6999999999988754 457899999875
No 203
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.60 E-value=0.00013 Score=79.15 Aligned_cols=96 Identities=9% Similarity=-0.008 Sum_probs=81.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc-------------------ccccchhHHHHHHHhhhccCCCCCcc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-------------------IVLGNRSSAYIRISQFLKHRPPSASE 82 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (469)
...++-.|..+++.+++.+|... +++..-+.+. .+++.+|.||-++|++
T Consensus 65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~---------- 132 (906)
T PRK14720 65 ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN---------- 132 (906)
T ss_pred eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh----------
Confidence 44555667777777777666555 5666655555 8999999999999999
Q ss_pred cCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 83 YRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 83 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
++|...++++++++|+++.++.++|..|... +.++|+.++.+|++..
T Consensus 133 -------------~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 133 -------------KKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred -------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 9999999999998863
No 204
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=1.2e-05 Score=53.95 Aligned_cols=44 Identities=30% Similarity=0.785 Sum_probs=37.9
Q ss_pred cccccccccccccEEccCCCc-ccHHHHHHHcc-cCCCcccccccc
Q 012162 178 FDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMD-RGNKCPLCRAVL 221 (469)
Q Consensus 178 ~~C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~-~~~~CP~Cr~~~ 221 (469)
.+|.||.+.-.+.|...|||. .|..|-.+.+. .+..||.||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 589999998888888999998 89999887776 445899999886
No 205
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.59 E-value=0.0003 Score=71.81 Aligned_cols=103 Identities=14% Similarity=-0.010 Sum_probs=52.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
.+.+.-+|..+...|+-++|...-..+++.|+..+..|.-+|..+...++| ++|++.
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y-----------------------~eaiKc 97 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY-----------------------DEAIKC 97 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH-----------------------HHHHHH
Confidence 334444444444455555555555555555555555555555555555555 555555
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
|+.|+.++|+|-..|.-++....++|+|+.....-.+.|++.|.+-
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR 143 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 5555555555555555555555555555555555445555554443
No 206
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=5e-05 Score=58.55 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=54.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
+...+...|..+++.|+|++|+..+++ ++.+|.+...++.+|.|++.+|+| ++|+.
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y-----------------------~eAi~ 79 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKY-----------------------EEAIK 79 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-H-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 445667799999999999999999999 899999888888999999999999 99999
Q ss_pred HHHHH
Q 012162 101 DAEKL 105 (469)
Q Consensus 101 ~~~~a 105 (469)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 98875
No 207
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.57 E-value=0.00072 Score=63.38 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=93.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCC----chh
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP----TTH 94 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 94 (469)
..+....|..+++.++|++|+..|++.++..|+++ .+++.+|.++..++.- ..+...+.+. +..
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~---------~~~~~~~~~~~~rD~~~ 139 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS---------ALQGFFGVDRSDRDPQH 139 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh---------hhhhccCCCccccCHHH
Confidence 34467889999999999999999999999999986 4566666665554310 0011112222 222
Q ss_pred HHHHHHHHHHHhhccccchH---H--------------HHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 95 AELALKDAEKLLNLQSNSMK---S--------------HLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~~~---~--------------~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
..+|+..+++.++.-|++.. + -+..|.-|.+.|+|..|+.-++.+++--|+.+...+.+-.+.
T Consensus 140 ~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~ 219 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLME 219 (243)
T ss_pred HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 46899999999999998643 1 234466688899999999999999999999887777766655
Q ss_pred Hhh
Q 012162 158 RTT 160 (469)
Q Consensus 158 ~~~ 160 (469)
+.-
T Consensus 220 ~ay 222 (243)
T PRK10866 220 NAY 222 (243)
T ss_pred HHH
Confidence 443
No 208
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=9.1e-05 Score=70.55 Aligned_cols=121 Identities=18% Similarity=0.241 Sum_probs=101.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCC-----------C--------CcccccchhHHHHHHHhhhccCCCCCcc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKP-----------G--------DPIVLGNRSSAYIRISQFLKHRPPSASE 82 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (469)
++.....|+..++.++|..|...|.+++..-- + ....+.+.+.+-++.+.+
T Consensus 222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~---------- 291 (372)
T KOG0546|consen 222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGR---------- 291 (372)
T ss_pred hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCC----------
Confidence 45566788999999999999999999875421 1 124556667777777887
Q ss_pred cCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 83 YRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 83 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
..|+.....+++.++...++||++|+++..+.++++|+.+++.+....|++..+.+.+....+.+..
T Consensus 292 -------------~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 292 -------------GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred -------------CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 7888888888889999999999999999999999999999999999999999999888888877766
Q ss_pred hhc
Q 012162 163 LIG 165 (469)
Q Consensus 163 ~~~ 165 (469)
..+
T Consensus 359 ~~~ 361 (372)
T KOG0546|consen 359 YNR 361 (372)
T ss_pred HHH
Confidence 543
No 209
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.56 E-value=9.2e-05 Score=46.17 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=30.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 55 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~ 55 (469)
+..+..+|..++..|+|++|+..|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999974
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.53 E-value=0.00055 Score=62.37 Aligned_cols=126 Identities=19% Similarity=0.196 Sum_probs=92.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
..+.+..|..+++.|+|.+|+..|++.++..|+++ .+++.+|.+++.+..-.- .+.+|+ ....+|
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~-----------~~~~D~-~~~~~A 109 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL-----------RSDRDQ-TSTRKA 109 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH------------TT----HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch-----------hcccCh-HHHHHH
Confidence 45667889999999999999999999999999976 578888998887754300 011222 334789
Q ss_pred HHHHHHHhhccccchHH-----------------HHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 99 LKDAEKLLNLQSNSMKS-----------------HLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~-----------------~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
+..++..++.-|++..+ -+..|..|...|.|..|+..++.+++.-|+.+.....+..+.+.
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 99999999999987542 24457778899999999999999999999988776666555443
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.53 E-value=0.00071 Score=58.03 Aligned_cols=97 Identities=24% Similarity=0.155 Sum_probs=74.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc----------------------ccccchhHHHHHHHhhhccCCC
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----------------------IVLGNRSSAYIRISQFLKHRPP 78 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~----------------------~~~~~~a~~~~~~~~~~~~~~~ 78 (469)
....+...|......|+...++..+.+|+.+-..+. .++..++..+...|++
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~------ 78 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDY------ 78 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-H------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH------
Confidence 345566778888888999999999999999854321 2223334456666788
Q ss_pred CCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012162 79 SASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 140 (469)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 140 (469)
++|+..+++++.++|.+-.+|..+-.+|...|++.+|+..|++..
T Consensus 79 -----------------~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 79 -----------------EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp -----------------HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998864
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.52 E-value=2.1e-05 Score=49.17 Aligned_cols=29 Identities=17% Similarity=0.449 Sum_probs=27.8
Q ss_pred HHHHHhcCCCCCcccccchhHHHHHHHhh
Q 012162 44 NYSRANNIKPGDPIVLGNRSSAYIRISQF 72 (469)
Q Consensus 44 ~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 72 (469)
+|++||+++|+++.+|+++|.+|...|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDY 29 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence 48999999999999999999999999999
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.51 E-value=7.2e-05 Score=49.84 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=39.8
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHH
Q 012162 56 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKAN 121 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 121 (469)
|.++..+|.+|..+|++ ++|++.++++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~-----------------------~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQP-----------------------DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 35678899999999999 99999999999999999999999885
No 214
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.51 E-value=5.7e-05 Score=75.51 Aligned_cols=66 Identities=33% Similarity=0.818 Sum_probs=51.9
Q ss_pred CccccccccccccccccEE-ccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHH
Q 012162 174 RTDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQK 240 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 240 (469)
.+.++.|++|..++.+|+. +.|||.||..|+..|......||.|+..+... ..+......++.+.+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA-EELPVPRALRRELLK 84 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchh-hccCchHHHHHHHHh
Confidence 6678999999999999999 59999999999999998878999999877433 333333344444443
No 215
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.50 E-value=0.00016 Score=49.90 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 114 KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
+.+|.+|.+++++|+|++|+.+.+.+|+.+|+|..+......+++++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999999888887764
No 216
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.00041 Score=60.31 Aligned_cols=103 Identities=23% Similarity=0.240 Sum_probs=91.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcC-CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNI-KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
+.-.+..|+.+...|++.+|..+|++++.- --+++..+..+|.+.+..+++ ..|..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~-----------------------A~a~~ 145 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF-----------------------AAAQQ 145 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH-----------------------HHHHH
Confidence 445567899999999999999999999863 556788899999999999999 99999
Q ss_pred HHHHHhhcccc--chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 101 DAEKLLNLQSN--SMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 101 ~~~~al~l~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
.+++..+.+|. .++.+..+|.+|...|++.+|...|+.++..-|+..
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 99999999885 578899999999999999999999999999988754
No 217
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.46 E-value=0.0003 Score=58.00 Aligned_cols=67 Identities=22% Similarity=0.115 Sum_probs=60.4
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHhHHHHH
Q 012162 56 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMA 132 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A 132 (469)
+.+++++|.++-.+|+. ++|+..|++++....+. ..++..+|..|..+|++++|
T Consensus 1 ~~~~~~~A~a~d~~G~~-----------------------~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA 57 (120)
T PF12688_consen 1 PRALYELAWAHDSLGRE-----------------------EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEA 57 (120)
T ss_pred CchHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 35778899999999999 99999999999975443 66899999999999999999
Q ss_pred HHHHhccccCCCC
Q 012162 133 RDAILSGLQVDPF 145 (469)
Q Consensus 133 ~~~~~~al~~~p~ 145 (469)
+..+++++.-.|+
T Consensus 58 ~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 58 LALLEEALEEFPD 70 (120)
T ss_pred HHHHHHHHHHCCC
Confidence 9999999998888
No 218
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.45 E-value=0.00021 Score=44.41 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=30.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 55 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~ 55 (469)
+..+...|..++..|+|++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4567899999999999999999999999999985
No 219
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.42 E-value=0.00023 Score=65.39 Aligned_cols=67 Identities=28% Similarity=0.618 Sum_probs=48.8
Q ss_pred cccccccccccccccEEc-cCCCcccHHHHHHHc-ccCCCccccccccccCCCcccCcccHHHHHHHhch
Q 012162 176 DDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSM-DRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 243 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~-~cgh~~C~~Ci~~~~-~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (469)
-.+.|+.|..++.+|+.+ -|||+||..||...+ +..+.||.|...-.. -..+.++...+.-|++++.
T Consensus 273 i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl-ld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 273 ISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL-LDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccch-hhccCccHHHHHHHHHHHH
Confidence 348999999999999988 689999999998765 456689999863211 1345566555555555543
No 220
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.41 E-value=8.3e-05 Score=73.43 Aligned_cols=52 Identities=31% Similarity=0.754 Sum_probs=43.1
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcc-----cCCCcccccccccc
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-----RGNKCPLCRAVLFI 223 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~-----~~~~CP~Cr~~~~~ 223 (469)
........|.+|.+.-.+++...|.|.||+.|+.++.. .+-.||+|...++.
T Consensus 531 ~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred ccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 33446679999999999999999999999999988754 23479999998854
No 221
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.00026 Score=66.99 Aligned_cols=74 Identities=14% Similarity=-0.041 Sum_probs=62.4
Q ss_pred ccccchhHHH-HHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHhHHHHH
Q 012162 57 IVLGNRSSAY-IRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMA 132 (469)
Q Consensus 57 ~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A 132 (469)
...+..|..+ ++.|+| ++|+..|+..++..|++ +.++|.+|.+|+..|+|++|
T Consensus 143 ~~~Y~~A~~l~~~~~~y-----------------------~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A 199 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQ-----------------------DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDA 199 (263)
T ss_pred HHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 4455566665 456888 99999999999999998 57999999999999999999
Q ss_pred HHHHhccccCCCCCchhHHHH
Q 012162 133 RDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 133 ~~~~~~al~~~p~~~~~~~~~ 153 (469)
+..|++++...|+++.....+
T Consensus 200 ~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 200 AYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHCCCCcchhHHH
Confidence 999999999999876554443
No 222
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.36 E-value=0.00074 Score=67.32 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=92.4
Q ss_pred HhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccch
Q 012162 34 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 113 (469)
Q Consensus 34 ~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~ 113 (469)
..++++.|+..|++..+.+|+ +...+|.+++.+++. .+|+..+.++++.+|.+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E-----------------------~~AI~ll~~aL~~~p~d~ 234 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEE-----------------------VEAIRLLNEALKENPQDS 234 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcH-----------------------HHHHHHHHHHHHhCCCCH
Confidence 457899999999999998875 455588888888887 899999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 114 KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
..+...|..+...++|+.|+...++|..+.|++...+..+..+--.+++.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999999999999999988888776666554
No 223
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.36 E-value=0.0011 Score=53.26 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=77.0
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC------------CcccccchhHHHHHHHhhhccCCCCCcccCccCC
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG------------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNG 88 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (469)
.+...+..|...+..|-|++|...|.+|++..-. ++-.|..++.++..+|+|
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry---------------- 71 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRY---------------- 71 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-H----------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccH----------------
Confidence 4555667888899999999999999999987443 236677888999999999
Q ss_pred CCCchhHHHHHHHHHHHhh-------cccc----chHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 89 LDPTTHAELALKDAEKLLN-------LQSN----SMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 89 ~~~~~~~~~A~~~~~~al~-------l~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
++++..++++|. ++.+ |..+.+.+|.++..+|+.++|+..|+.+-+
T Consensus 72 -------~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 72 -------DECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -------HHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 888888888775 3333 566788999999999999999999988754
No 224
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.30 E-value=0.0013 Score=52.42 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=83.7
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHH
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 104 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 104 (469)
++..++.+||+.+|++..+..+...+++. .++..-|.+++++..- .+.++..+.- .-.|++.+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~---ten~d~k~~y---------Ll~sve~~s~ 69 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK---TENPDVKFRY---------LLGSVECFSR 69 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh---ccCchHHHHH---------HHHhHHHHHH
Confidence 57789999999999999999999988877 4566677788777654 1122222222 2779999999
Q ss_pred HhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 105 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 105 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
+..+.|+.+..++.+|.-+.....|+++..--+++|.+.
T Consensus 70 a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 70 AVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999999999999999999888999999999999988763
No 225
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.29 E-value=0.0014 Score=67.75 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=84.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+.-.|..+-..|++++|+.+.++||+.+|..+++|...|.+|-+.|++ .+|...
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~-----------------------~~Aa~~ 250 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL-----------------------KEAAEA 250 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 456667788888889999999999999999999999999999999999999 899999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
.+.|-++|+.+-..-...+..+.+.|+.++|...+..-.+-+
T Consensus 251 ~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 251 MDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 999999998887666667778888999999988887776654
No 226
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00013 Score=69.36 Aligned_cols=47 Identities=28% Similarity=0.738 Sum_probs=41.3
Q ss_pred cccccccccccccccEEccCCCc-ccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.-.+|.||+.-.++.+.+||.|. .|.+|.+...-+.+.||+||+++.
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 35689999999999999999999 999998876656778999999873
No 227
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.27 E-value=0.00035 Score=62.24 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=66.4
Q ss_pred CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHH
Q 012162 55 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARD 134 (469)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 134 (469)
.+..++.||..|-.+|-+ ..|.-++.+++.+.|+-+.++..+|.-+...|+|+.|.+
T Consensus 64 RA~l~fERGvlYDSlGL~-----------------------~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~e 120 (297)
T COG4785 64 RAQLLFERGVLYDSLGLR-----------------------ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 120 (297)
T ss_pred HHHHHHHhcchhhhhhHH-----------------------HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHH
Confidence 356677788888889988 999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCchhH
Q 012162 135 AILSGLQVDPFSNPLQ 150 (469)
Q Consensus 135 ~~~~al~~~p~~~~~~ 150 (469)
.|...+++||.+.-+.
T Consensus 121 aFds~~ELDp~y~Ya~ 136 (297)
T COG4785 121 AFDSVLELDPTYNYAH 136 (297)
T ss_pred HhhhHhccCCcchHHH
Confidence 9999999999877653
No 228
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.25 E-value=0.00024 Score=53.54 Aligned_cols=46 Identities=26% Similarity=0.723 Sum_probs=34.1
Q ss_pred cccccccccccc-----------c-cEE-ccCCCcccHHHHHHHccc---CCCccccccccc
Q 012162 177 DFDCTLCLKLLY-----------E-PIT-TPCGHSFCRSCLFQSMDR---GNKCPLCRAVLF 222 (469)
Q Consensus 177 ~~~C~ic~~~~~-----------~-p~~-~~cgh~~C~~Ci~~~~~~---~~~CP~Cr~~~~ 222 (469)
+-.|.||...|. + |+. -.|+|.|...||.+|+.. ...||.||++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 445666666554 2 433 479999999999999974 247999999864
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.25 E-value=0.0011 Score=57.62 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=56.0
Q ss_pred hHHHHHHhHHHHHHh----------ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCC
Q 012162 21 HVFDLVQKGNRAFRE----------SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 90 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~----------~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (469)
+++.|.+=|.++... .-+++|+..|++||.++|+.+.+++++|.+|..++.+.. +. .+
T Consensus 24 DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~-----d~-------~~ 91 (186)
T PF06552_consen 24 DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP-----DT-------AE 91 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--------H-------HH
T ss_pred hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC-----Ch-------HH
Confidence 355555555555433 346889999999999999999999999999999887510 00 01
Q ss_pred CchhHHHHHHHHHHHhhccccchH
Q 012162 91 PTTHAELALKDAEKLLNLQSNSMK 114 (469)
Q Consensus 91 ~~~~~~~A~~~~~~al~l~p~~~~ 114 (469)
...+.++|...|++|...+|++..
T Consensus 92 A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 92 AEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHH
Confidence 122348899999999999999843
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=97.25 E-value=0.00059 Score=58.69 Aligned_cols=92 Identities=9% Similarity=-0.117 Sum_probs=76.5
Q ss_pred HhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Q 012162 48 ANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE 127 (469)
Q Consensus 48 al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~ 127 (469)
...+.++.-...+..|.-++..|++ ++|...|+-..-++|.+++.++.+|.++..+|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~-----------------------~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k 85 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRL-----------------------DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK 85 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH
Confidence 3445555566777888889999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 128 RYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 128 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
+|++|++.|..|..++++|+........+.-.+++
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 99999999999999999988755444444444433
No 231
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.24 E-value=0.001 Score=63.92 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHH
Q 012162 37 NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSH 116 (469)
Q Consensus 37 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 116 (469)
.+.+|...|++..+..+.++.+++.+|.+++.+|+| ++|...+.+++..+|+++.++
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~-----------------------~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY-----------------------EEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H-----------------------HHHHHHHHHHCCC-CCHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH-----------------------HHHHHHHHHHHHhccCCHHHH
Confidence 699999999998888788899999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHhHH-HHHHHHHhccccCCCCCchhHHH
Q 012162 117 LLKANALILLERY-DMARDAILSGLQVDPFSNPLQAS 152 (469)
Q Consensus 117 ~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~ 152 (469)
.+++.+...+|+. +.+...+.+....+|+++-....
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999 56667888888889988765443
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.23 E-value=0.0011 Score=55.82 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=63.9
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCcc--CCCCCchhHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPL--NGLDPTTHAEL 97 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 97 (469)
.+.+..|..+|+.|+|++|+..|++-|+++|+++ .+++.+|.+++....- ..+.+ ..+|++. +..
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~---------~~~~~~~~drD~~~-~~~ 117 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG---------SLQSFFRSDRDPTP-ARQ 117 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh---------HHhhhcccccCcHH-HHH
Confidence 4557789999999999999999999999999987 5678888888887641 01111 2333332 479
Q ss_pred HHHHHHHHhhccccchHH
Q 012162 98 ALKDAEKLLNLQSNSMKS 115 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~ 115 (469)
|+.++++.++.-|++..+
T Consensus 118 A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 118 AFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHCcCChhH
Confidence 999999999999998654
No 233
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0015 Score=62.37 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=78.2
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCC----cc--cCccC--------------
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSA----SE--YRPLN-------------- 87 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~--~~~~~-------------- 87 (469)
.|..+|+.|||++|+..|+-+..-+..++.++.++|.|++.+|.|.++...+. +. -+.|+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 47889999999999999999999888888999999999999999954322111 11 01111
Q ss_pred --------CCCC---------chhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 88 --------GLDP---------TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 88 --------~~~~---------~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
.+|+ .++.++|++.+.+++.-+|+....-..+|.+|+++.-|+-+...+.-.|+..|++.-+.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH
Confidence 0000 11125555555555555555555555555556655555555555555555555555444
Q ss_pred HH
Q 012162 151 AS 152 (469)
Q Consensus 151 ~~ 152 (469)
+.
T Consensus 223 NL 224 (557)
T KOG3785|consen 223 NL 224 (557)
T ss_pred HH
Confidence 33
No 234
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.19 E-value=0.0019 Score=66.17 Aligned_cols=114 Identities=17% Similarity=0.001 Sum_probs=101.6
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHH
Q 012162 26 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 105 (469)
Q Consensus 26 ~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 105 (469)
...++...-.++.++|+.+++++++..|+.+.+|..+|+++-++++. +.|...|...
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i-----------------------e~aR~aY~~G 711 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI-----------------------EMAREAYLQG 711 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH-----------------------HHHHHHHHhc
Confidence 33444555678999999999999999999999999999999999999 9999999999
Q ss_pred hhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 106 LNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 106 l~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
++.-|+.+-.|..++..-...|..-.|...++++.-.||+|...+...-+++-..++
T Consensus 712 ~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 712 TKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred cccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999887766666655444
No 235
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00031 Score=66.12 Aligned_cols=53 Identities=21% Similarity=0.596 Sum_probs=46.0
Q ss_pred CCCCCCccccccccccccccccEEccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 169 HGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 169 ~~~~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
......+++-.|+||..--.+.|..||+|.-|++||.+++.+.+.|-.|+..+
T Consensus 414 ~~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 414 NKDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred cCCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence 34455567889999998888888899999999999999999999999998765
No 236
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.16 E-value=0.00022 Score=44.38 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 114 KSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
.+|+.+|.+|..+|++++|+..|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 689999999999999999999999999999954
No 237
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.15 E-value=0.0011 Score=66.85 Aligned_cols=102 Identities=23% Similarity=0.137 Sum_probs=90.9
Q ss_pred HHhccHHHHHHHHHHHhcCCCCCc-ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcccc
Q 012162 33 FRESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 111 (469)
Q Consensus 33 ~~~~~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 111 (469)
.-.|+...|++++.+|+...|... ....++|...++.+-. ..|-..+.+++.+...
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~-----------------------~da~~~l~q~l~~~~s 674 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH-----------------------LDATKLLLQALAINSS 674 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh-----------------------ccHHHHHHHHHhhccc
Confidence 456999999999999999999755 4567889998888876 7899999999999988
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 112 SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
.|-.++.+|.+|..+.+.+.|+++|+.|+.++|++....+.+..+.
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 8999999999999999999999999999999999999887776653
No 238
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.11 E-value=0.00021 Score=68.23 Aligned_cols=47 Identities=36% Similarity=0.752 Sum_probs=40.5
Q ss_pred cccccccccccccEEccCCCcccHHHHHHHccc--CCCccccccccccC
Q 012162 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR--GNKCPLCRAVLFIT 224 (469)
Q Consensus 178 ~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~--~~~CP~Cr~~~~~~ 224 (469)
..|.||-+.-++-.+-||||..|..|+..|... +..||.||..+...
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 369999999888888999999999999999853 56899999988543
No 239
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.08 E-value=0.0012 Score=63.55 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=82.3
Q ss_pred hHHHHHHhHHHHHHh-ccHHHHHHHHHHHhcCCCC--C----cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 21 HVFDLVQKGNRAFRE-SNFEEAISNYSRANNIKPG--D----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~-~~~~~A~~~y~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
-+..+...|..+... |++++|+.+|.+|+++-.. . ...+.+.|.++..+|+|
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y--------------------- 171 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY--------------------- 171 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H---------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH---------------------
Confidence 366777888888888 9999999999999988322 1 25667888999999999
Q ss_pred hHHHHHHHHHHHhhcccc------ch-HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHH
Q 012162 94 HAELALKDAEKLLNLQSN------SM-KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 151 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~------~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (469)
.+|+..++++....-+ +. ..++..+.++...|++-.|...|++....+|......+
T Consensus 172 --~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 172 --EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp --HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred --HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 9999999998764211 23 34566778899999999999999999999998766543
No 240
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0035 Score=63.62 Aligned_cols=124 Identities=21% Similarity=0.186 Sum_probs=75.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccC------C--CCCccc--CccCCCCC
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHR------P--PSASEY--RPLNGLDP 91 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~--~~~~~~~~ 91 (469)
...++..-+.+.+.|+|++|+....+.+...|++..++.-.-.|+.++++|-+.. . .....+ ...+..=.
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence 3566777778888899999999988888888887655554444444444440000 0 000000 00000000
Q ss_pred chhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 92 TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 92 ~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
.+-.++|+..++ .+++.+.......|++++.+|+|++|.+.|+..++-+-++.+
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 000066666655 456666778888899999999999999999998876665543
No 241
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.06 E-value=0.0033 Score=61.25 Aligned_cols=95 Identities=19% Similarity=0.344 Sum_probs=78.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCC--------CCc----------ccccchhHHHHHHHhhhccCCCCCccc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKP--------GDP----------IVLGNRSSAYIRISQFLKHRPPSASEY 83 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p--------~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (469)
.......|...|++++|..|+.-|..||++-. ..+ .+-..+..||+++++.
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp----------- 244 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKP----------- 244 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC-----------
Confidence 44556678889999999999999999998732 222 2334577899999999
Q ss_pred CccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 84 RPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 84 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
+.|+....+.|-++|.++..|.+.|.++..+.+|.+|..-+--|
T Consensus 245 ------------dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 245 ------------DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred ------------chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987654443
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.98 E-value=0.00095 Score=54.65 Aligned_cols=62 Identities=19% Similarity=0.111 Sum_probs=56.8
Q ss_pred hhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 62 RSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 62 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
.|.+....|+. +.|++.|.+++.+-|..+.+|.++|+++...|+.++|++++.+|++
T Consensus 49 ~~valaE~g~L-----------------------d~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 49 KAIALAEAGDL-----------------------DGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHHHhccch-----------------------HHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 45667778888 9999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 012162 142 VDPFS 146 (469)
Q Consensus 142 ~~p~~ 146 (469)
+..+.
T Consensus 106 Lag~~ 110 (175)
T KOG4555|consen 106 LAGDQ 110 (175)
T ss_pred hcCcc
Confidence 97654
No 243
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.89 E-value=0.0009 Score=63.48 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=61.0
Q ss_pred cchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 60 GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
-.+|.-|++.|+| ++|+..|.+++.++|.|+-.|.++|.+|+.+++|..|..+...|
T Consensus 101 KE~GN~yFKQgKy-----------------------~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 101 KERGNTYFKQGKY-----------------------EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred HHhhhhhhhccch-----------------------hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 3467789999999 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhH
Q 012162 140 LQVDPFSNPLQ 150 (469)
Q Consensus 140 l~~~p~~~~~~ 150 (469)
+.+|-....++
T Consensus 158 iaLd~~Y~KAY 168 (536)
T KOG4648|consen 158 IALDKLYVKAY 168 (536)
T ss_pred HHhhHHHHHHH
Confidence 99986554443
No 244
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.89 E-value=0.00052 Score=66.53 Aligned_cols=99 Identities=21% Similarity=0.150 Sum_probs=79.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
..++-+.|+.|+-.|||+.||.+-+.-+.+.... -.++.|+|.||.-+|++
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f----------------------- 251 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF----------------------- 251 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc-----------------------
Confidence 3455567888889999999999888777764332 36899999999999999
Q ss_pred HHHHHHHHHHhhc----ccc--chHHHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 96 ELALKDAEKLLNL----QSN--SMKSHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 96 ~~A~~~~~~al~l----~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
+.|+++|++++.+ ... .+...|.+|+.|..+.+|+.|+.++.+-|++.
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999886554 333 34567899999999999999999999877663
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0074 Score=56.67 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=95.9
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH------
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE------ 96 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 96 (469)
+.....|......|++.+|...|..++..+|++..+...+|.||...|+.. +++.++...|...-.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e--------~A~~iL~~lP~~~~~~~~~~l 206 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVE--------AAQAILAALPLQAQDKAAHGL 206 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChH--------HHHHHHHhCcccchhhHHHHH
Confidence 334566778899999999999999999999999999999999999999871 234443333322111
Q ss_pred -HHH------------HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC--chhHHHHHHHHHh
Q 012162 97 -LAL------------KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS--NPLQASLQNLERT 159 (469)
Q Consensus 97 -~A~------------~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~ 159 (469)
..+ .++++.+..||++..+-+.+|..|...|++++|.+.+-..++.|-++ ..+++.+-.+-..
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 112 23455566789999999999999999999999999999999887643 4455544444333
No 246
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0055 Score=58.55 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=79.8
Q ss_pred HHHHHhccHHHHHHHHHHHhcCCCCCc-ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc
Q 012162 30 NRAFRESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 108 (469)
Q Consensus 30 ~~~~~~~~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 108 (469)
.......||..|+..++-.+..+...- ..-.++|.|++.+|+| ++|+..++-+..-
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY-----------------------~~Al~~Y~~~~~~ 86 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY-----------------------EEALNVYTFLMNK 86 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH-----------------------HHHHHHHHHHhcc
Confidence 456778999999999998887765543 5667899999999999 9999999999998
Q ss_pred cccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHH
Q 012162 109 QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 151 (469)
Q Consensus 109 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (469)
+.-+.+.+.++|-+++-+|.|.+|...-.+| |+++....
T Consensus 87 ~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~R 125 (557)
T KOG3785|consen 87 DDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIR 125 (557)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHH
Confidence 8778899999999999999999999887775 55554333
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.0023 Score=59.44 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=66.7
Q ss_pred ccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHhHHHHHHHH
Q 012162 59 LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDA 135 (469)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A~~~ 135 (469)
.|+-|.-+++.|+| ..|...|..-++.-|++ +.|+|++|.+++.+|+|++|...
T Consensus 144 ~Y~~A~~~~ksgdy-----------------------~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~ 200 (262)
T COG1729 144 LYNAALDLYKSGDY-----------------------AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYI 200 (262)
T ss_pred HHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHH
Confidence 67888999999999 99999999999998876 67999999999999999999999
Q ss_pred HhccccCCCCCchhHHHHHHHH
Q 012162 136 ILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 136 ~~~al~~~p~~~~~~~~~~~~~ 157 (469)
|..+.+-.|+++.+-..+-++-
T Consensus 201 f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 201 FARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHhCCCCCCChHHHHHHH
Confidence 9999999998887655554433
No 248
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.82 E-value=0.002 Score=61.96 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=67.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCC--CC----cccccchhHHHHHH-HhhhccCCCCCcccCccCCCCCchh
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKP--GD----PIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p--~~----~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
+..+.. +...++.+++.+|+.+|++|+.+-- ++ +.++.++|.+|... +++
T Consensus 75 a~~~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~---------------------- 131 (282)
T PF14938_consen 75 AKAYEE-AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDY---------------------- 131 (282)
T ss_dssp HHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--H----------------------
T ss_pred HHHHHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCH----------------------
Confidence 333333 3334455577777777777776521 11 24555556666555 666
Q ss_pred HHHHHHHHHHHhhccc------cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 95 AELALKDAEKLLNLQS------NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
++|+..|++|+++-. .....+...|.++..+|+|++|+..|++.....-+++.
T Consensus 132 -e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l 190 (282)
T PF14938_consen 132 -EKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL 190 (282)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT
T ss_pred -HHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 999999999998632 12346678899999999999999999998875544443
No 249
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.77 E-value=0.0027 Score=63.21 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=71.1
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+-+++.++++.++|..|+....+|++++|....+|+.+|.+.++++.+ .+|+.++
T Consensus 39 ~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~-----------------------~~A~~~l 95 (476)
T KOG0376|consen 39 IYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF-----------------------KKALLDL 95 (476)
T ss_pred eeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH-----------------------HHHHHHH
Confidence 34446778888999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHH
Q 012162 103 EKLLNLQSNSMKSHLLKANALI 124 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~ 124 (469)
+....+.|+.+++...+..+-.
T Consensus 96 ~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 96 EKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999999998777766643
No 250
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.75 E-value=0.0074 Score=49.79 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHhh-cccc-chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 94 HAELALKDAEKLLN-LQSN-SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 94 ~~~~A~~~~~~al~-l~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
++.+.+..++..++ -.|. .-+..|.+|..++++|+|+.|+.+.+..|+.+|+|.++....+.+++++.+.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itke 121 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKE 121 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Confidence 34889999999986 4443 3456788999999999999999999999999999999999988888887653
No 251
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.72 E-value=0.0019 Score=39.96 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=29.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 55 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~ 55 (469)
+..+...|..+...|++++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3568899999999999999999999999999853
No 252
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.71 E-value=0.00083 Score=65.57 Aligned_cols=50 Identities=34% Similarity=0.664 Sum_probs=40.7
Q ss_pred CCCCCccccccccccccccccE----EccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 170 GTPERTDDFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 170 ~~~~~~~~~~C~ic~~~~~~p~----~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
......+.-+|++|++-|.+-+ ++.|.|+|...|+..|+. .+||+||.-.
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhc
Confidence 3444556779999999998764 579999999999999974 4799999643
No 253
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.00087 Score=64.91 Aligned_cols=47 Identities=28% Similarity=0.803 Sum_probs=39.3
Q ss_pred ccccccccccccccccE-----E---ccCCCcccHHHHHHHc--cc-----CCCcccccccc
Q 012162 175 TDDFDCTLCLKLLYEPI-----T---TPCGHSFCRSCLFQSM--DR-----GNKCPLCRAVL 221 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~-----~---~~cgh~~C~~Ci~~~~--~~-----~~~CP~Cr~~~ 221 (469)
..+..|.||.+...+++ - .+|.|+||..||..|- .+ ...||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 56779999999888876 3 5799999999999997 44 46799999865
No 254
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0024 Score=59.63 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=81.4
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+....+.|...|+.|+|++|+..|+.|++...-++.+-+++|.|+++.++| +.|+
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qy-----------------------asAL 198 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQY-----------------------ASAL 198 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhH-----------------------HHHH
Confidence 45677888999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhh----cccc-------------------------chHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 100 KDAEKLLN----LQSN-------------------------SMKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 100 ~~~~~al~----l~p~-------------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
+...+.++ -.|. -..++..++-++++.|+++.|.+.+...
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 88766654 2222 2347777888899999999998876543
No 255
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.66 E-value=0.0041 Score=58.28 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=70.6
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
.....+......|....+.|+.++|...|.-|++++|+++.++...|...-..++. -
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i-----------------------v 167 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI-----------------------V 167 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh-----------------------H
Confidence 44455666667788888999999999999999999999999987777766666666 7
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHH
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANAL 123 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~ 123 (469)
+|-..|-+|+.++|.+.+|+.+++...
T Consensus 168 ~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 168 EADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred hhhhhhheeeeeCCCchHHHhhhhccc
Confidence 899999999999999999998887643
No 256
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.65 E-value=0.0027 Score=65.73 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=66.3
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHH
Q 012162 57 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAI 136 (469)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~ 136 (469)
++++.+|+.|...|++ ++|+...++||+..|..++.|+.+|.+|...|++.+|..++
T Consensus 195 w~~~~lAqhyd~~g~~-----------------------~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~ 251 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDY-----------------------EKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAM 251 (517)
T ss_pred HHHHHHHHHHHHhCCH-----------------------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5668899999999999 99999999999999999999999999999999999999999
Q ss_pred hccccCCCCCchhH
Q 012162 137 LSGLQVDPFSNPLQ 150 (469)
Q Consensus 137 ~~al~~~p~~~~~~ 150 (469)
+.|-.+|+.|--+.
T Consensus 252 ~~Ar~LD~~DRyiN 265 (517)
T PF12569_consen 252 DEARELDLADRYIN 265 (517)
T ss_pred HHHHhCChhhHHHH
Confidence 99999999876543
No 257
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.59 E-value=0.0023 Score=39.22 Aligned_cols=33 Identities=21% Similarity=0.096 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 114 KSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
++++.+|.++...|++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999998874
No 258
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.54 E-value=0.0044 Score=60.30 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=79.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCC----CC--CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIK----PG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~----p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
-.++.+.|+.+.-.|+|+.|+++|.+++.+. .. .+..-+.+|.+|.-+.++
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~----------------------- 291 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV----------------------- 291 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH-----------------------
Confidence 4566678999999999999999999887552 22 234456789999999999
Q ss_pred HHHHHHHHHHhhccc------cchHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 96 ELALKDAEKLLNLQS------NSMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 96 ~~A~~~~~~al~l~p------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
++||.+..+-+.+.- ....+++.+|.+|..+|..++|+...++.+++
T Consensus 292 ~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999988777642 34668999999999999999999888887665
No 259
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.50 E-value=0.007 Score=58.77 Aligned_cols=101 Identities=17% Similarity=0.071 Sum_probs=68.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
..-....+..+..-|++++|.+....+++..-+.. +.... -..+.+++ ..=++.
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~-----------------------~~l~k~ 316 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDP-----------------------EPLIKA 316 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCc-----------------------hHHHHH
Confidence 44445566777788888888888888887654322 11110 11223444 556677
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
+++.++..|+++..++.+|..+.+.+.|.+|..+|+.|++..|+...
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD 363 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence 77888888888888888888888888888888888888887776543
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.49 E-value=0.026 Score=50.35 Aligned_cols=100 Identities=23% Similarity=0.248 Sum_probs=57.8
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhH-HHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSS-AYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
..+...|......+++..|+..+.+++..++.+.......+. ++...+++ +.|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~a~~~ 152 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDY-----------------------EEALEL 152 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 344455555555566666666666666665555444444444 55566666 666666
Q ss_pred HHHHhhccc---cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 102 AEKLLNLQS---NSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 102 ~~~al~l~p---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
+.+++..+| .....+...+..+...+++++|+..+.+++...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 666666555 34444555555555666666666666666666665
No 261
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.47 E-value=0.0042 Score=36.95 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 114 KSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
.+++.+|.++..+|++++|...|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999998863
No 262
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.012 Score=55.03 Aligned_cols=108 Identities=21% Similarity=0.212 Sum_probs=94.0
Q ss_pred HHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccc
Q 012162 31 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 110 (469)
Q Consensus 31 ~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 110 (469)
.+.+..+|..||.+..--.+.+|.+...+..+|.||+...+| ..|...+++.-.+.|
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f-----------------------~~AA~CYeQL~ql~P 75 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEF-----------------------ALAAECYEQLGQLHP 75 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhhCh
Confidence 346778999999999999999999999999999999999999 999999999999999
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 111 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
...+..+..|+.+++.+.|.+|+....... +++..++..-.++.+++....
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIkYse~ 126 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLL----DNPALHSRVLQLQAAIKYSEG 126 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999998776543 446677777777777766543
No 263
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.002 Score=60.48 Aligned_cols=47 Identities=28% Similarity=0.569 Sum_probs=40.9
Q ss_pred ccccccccccccccccEE-ccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 175 TDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
.+.-.|++|+....+|.. .-.|..||+.|+..+......||++..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345589999999999955 57899999999999999888999999876
No 264
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.40 E-value=0.0069 Score=60.22 Aligned_cols=112 Identities=15% Similarity=0.051 Sum_probs=91.1
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHH-hcCCCC--------CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCC
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRA-NNIKPG--------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 91 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (469)
.+..+..+++.+|-.|||.+|.+.+... +.-.|. .-.+|+|+|.++++++.|
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y------------------- 299 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY------------------- 299 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH-------------------
Confidence 3567778899999999999999987654 333333 236679999999999999
Q ss_pred chhHHHHHHHHHHHhh------------------ccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHH
Q 012162 92 TTHAELALKDAEKLLN------------------LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 92 ~~~~~~A~~~~~~al~------------------l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
..+...|.+|++ .........|+.|..|...|+.-.|.+.|.++...--.|+.++..+
T Consensus 300 ----~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRl 375 (696)
T KOG2471|consen 300 ----QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRL 375 (696)
T ss_pred ----HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888888885 1234577899999999999999999999999999888888887766
Q ss_pred HH
Q 012162 154 QN 155 (469)
Q Consensus 154 ~~ 155 (469)
..
T Consensus 376 AE 377 (696)
T KOG2471|consen 376 AE 377 (696)
T ss_pred HH
Confidence 54
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.38 E-value=0.0011 Score=41.95 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 115 SHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 115 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
+|..+|.+|...|+|++|+..|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999976553
No 266
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.016 Score=58.96 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=82.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC-------------------------------CcccccchhHHHHHHHh
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPG-------------------------------DPIVLGNRSSAYIRISQ 71 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~-------------------------------~~~~~~~~a~~~~~~~~ 71 (469)
..+..+|..+++.|+|++|...|+..++.+-+ ..+.++|.|.++...|+
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 35667899999999999999999887554332 23677889999999999
Q ss_pred hhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc-------cccc--------hHHHHHHHHHHHHHhHHHHHHHHH
Q 012162 72 FLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL-------QSNS--------MKSHLLKANALILLERYDMARDAI 136 (469)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-------~p~~--------~~~~~~~g~~~~~~~~~~~A~~~~ 136 (469)
| .+|++.+++|+++ +..+ .-....++.++..+|+-++|...|
T Consensus 191 y-----------------------~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 191 Y-----------------------NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred H-----------------------HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 9 9999999888432 1111 235678899999999999999999
Q ss_pred hccccCCCCCchh
Q 012162 137 LSGLQVDPFSNPL 149 (469)
Q Consensus 137 ~~al~~~p~~~~~ 149 (469)
...++.+|.|...
T Consensus 248 ~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 248 VDIIKRNPADEPS 260 (652)
T ss_pred HHHHHhcCCCchH
Confidence 9999999987643
No 267
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.022 Score=54.23 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=64.3
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
+..-++--|.++|.+.+.-|||..|+...++|+.++|++..+++.-|.|++.++++ .
T Consensus 114 D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~-----------------------~ 170 (390)
T KOG0551|consen 114 DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERF-----------------------A 170 (390)
T ss_pred CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHH-----------------------H
Confidence 34445777889999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhcccc
Q 012162 97 LALKDAEKLLNLQSN 111 (469)
Q Consensus 97 ~A~~~~~~al~l~p~ 111 (469)
+|...++..+.++-.
T Consensus 171 ~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 171 EAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHhhhhhhhHH
Confidence 999999998766543
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.012 Score=62.24 Aligned_cols=43 Identities=37% Similarity=0.775 Sum_probs=36.2
Q ss_pred cccccccccccccccEE-ccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 176 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
..-.|..|.-.+.-|++ +.|||+|...|++ +....||.|+-..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 44689999999999955 8999999999998 5556899998643
No 269
>PRK10941 hypothetical protein; Provisional
Probab=96.25 E-value=0.0081 Score=56.83 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=65.9
Q ss_pred cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHh
Q 012162 58 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 137 (469)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 137 (469)
.+.++=.+|.+.+++ +.|+...+..+.++|+++.-+.-+|.+|.++|.+..|+.+++
T Consensus 183 ml~nLK~~~~~~~~~-----------------------~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~ 239 (269)
T PRK10941 183 LLDTLKAALMEEKQM-----------------------ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLS 239 (269)
T ss_pred HHHHHHHHHHHcCcH-----------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 344555678888888 999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhHHHHHHH
Q 012162 138 SGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 138 ~al~~~p~~~~~~~~~~~~ 156 (469)
..++..|+++.+......+
T Consensus 240 ~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 240 YFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHhCCCchhHHHHHHHH
Confidence 9999999998875443333
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.21 E-value=0.022 Score=50.85 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=75.0
Q ss_pred HHHHhccHHHHHHHHHHHhcCCC---CCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh
Q 012162 31 RAFRESNFEEAISNYSRANNIKP---GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 107 (469)
Q Consensus 31 ~~~~~~~~~~A~~~y~~al~~~p---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 107 (469)
.++..|+++.|+..|.+++..+| .....+..++..+...+++ ..|+..+.+++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~a~~~~~~~~~ 195 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY-----------------------EEALELLEKALK 195 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH-----------------------HHHHHHHHHHHh
Confidence 78888888888888888888777 3445556666666777788 888888888888
Q ss_pred cccc-chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 108 LQSN-SMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 108 l~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
..+. ...++..++..+...++++.|+..+..++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 8888 6888888888888888888888888888888886
No 271
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.21 E-value=0.031 Score=53.64 Aligned_cols=113 Identities=18% Similarity=0.019 Sum_probs=85.0
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHH-HhhhccCCCCCcccCccCCCCCchhHHHHHHHHH
Q 012162 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 103 (469)
Q Consensus 25 ~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 103 (469)
|....+...+.+..+.|...|.+|.+-.+....+|...|..-+.. ++. ..|...|+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~-----------------------~~A~~Ife 60 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDP-----------------------KRARKIFE 60 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-H-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH-----------------------HHHHHHHH
Confidence 445556666667799999999999977666777777777765553 444 56999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc---hhHHHHHHHHHhh
Q 012162 104 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN---PLQASLQNLERTT 160 (469)
Q Consensus 104 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~ 160 (469)
.+++.-|.+...|......+...|+.+.|...|++++..-|... .++...-..|...
T Consensus 61 ~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~ 120 (280)
T PF05843_consen 61 RGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY 120 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999877655 3444444444433
No 272
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.16 E-value=0.0028 Score=61.47 Aligned_cols=36 Identities=28% Similarity=0.850 Sum_probs=32.1
Q ss_pred ccccccccccccccccEEccCCCcccHHHHHHHccc
Q 012162 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR 210 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~ 210 (469)
++++.|++|...|.+|++++|||+.|+.|....+..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 467899999999999999999999999999866554
No 273
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.13 E-value=0.015 Score=61.36 Aligned_cols=122 Identities=21% Similarity=0.349 Sum_probs=106.2
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC----cccccchhHHHHHH--HhhhccCCCCCcccCccCCCCCc
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD----PIVLGNRSSAYIRI--SQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
...+..+..+|+..+++++|.+|.--|..++.+-|.+ +..+.+.+.+|+.+ ++|
T Consensus 50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~-------------------- 109 (748)
T KOG4151|consen 50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEY-------------------- 109 (748)
T ss_pred HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccch--------------------
Confidence 3457788899999999999999999999999998854 35667777777765 677
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 93 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
..++.++.-|+...|....+++.++..|..+++++-|+....-....+|.+..+..-..+++..+...
T Consensus 110 ---~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~ 177 (748)
T KOG4151|consen 110 ---PKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELK 177 (748)
T ss_pred ---hhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999999999999999999998888777777777443
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.031 Score=49.35 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=77.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
+......+..++..|++++|+..+..++....+. +.+-.++|.+.+..|.+ ++|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~-----------------------D~A 145 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA-----------------------DAA 145 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH-----------------------HHH
Confidence 4556678889999999999999999999764442 24556788889999999 888
Q ss_pred HHHHHHHhhccccch-HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 99 LKDAEKLLNLQSNSM-KSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 99 ~~~~~~al~l~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
+..++.... +++. ...-.+|.++...|+-++|+..|++|++.++++
T Consensus 146 L~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 887765432 2222 224568999999999999999999999987443
No 275
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.09 E-value=0.045 Score=53.34 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=100.7
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
+..++......|..-+..|+|.+|.....++-+..+....+|..-|.+--++|++ +.
T Consensus 80 Krrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~-----------------------~~ 136 (400)
T COG3071 80 KRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDE-----------------------DR 136 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccH-----------------------HH
Confidence 4456777888899999999999999999998888877777777778888889999 99
Q ss_pred HHHHHHHHhhcccc-chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 98 ALKDAEKLLNLQSN-SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 98 A~~~~~~al~l~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
|-.+..++-++.++ .-..+..++..+...|+|+.|..-..++++..|.++........+--.++
T Consensus 137 an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g 201 (400)
T COG3071 137 ANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG 201 (400)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc
Confidence 99999999999443 34567788999999999999999999999999999987766555444443
No 276
>PRK10941 hypothetical protein; Provisional
Probab=96.07 E-value=0.022 Score=53.95 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=67.7
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHH
Q 012162 26 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 105 (469)
Q Consensus 26 ~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 105 (469)
.+.-..+.+.++|+.|+...+..+.++|+++.-+..||.+|.++|.+ ..|..+++..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~-----------------------~~A~~DL~~f 241 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE-----------------------HVALSDLSYF 241 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-----------------------HHHHHHHHHH
Confidence 34456778999999999999999999999999999999999999999 9999999999
Q ss_pred hhccccchHHHHHHHHHH
Q 012162 106 LNLQSNSMKSHLLKANAL 123 (469)
Q Consensus 106 l~l~p~~~~~~~~~g~~~ 123 (469)
++..|+++.+...+.++.
T Consensus 242 l~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 242 VEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHhCCCchhHHHHHHHHH
Confidence 999999999877766554
No 277
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.03 Score=51.63 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=85.4
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHh----cCCC--CCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRAN----NIKP--GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al----~~~p--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
-....|...++.||-+.|-.+|++.- +++. .+-..+.+.+.+|...++| ..
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~-----------------------a~ 270 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF-----------------------AE 270 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch-----------------------HH
Confidence 34467888999999999999999443 3322 2335566777788888899 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
|...+.+.+..||.++.+-.++|.++.-+|+..+|++..+.++...|....
T Consensus 271 a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 271 AHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 999999999999999999999999999999999999999999999997543
No 278
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.02 E-value=0.0055 Score=55.21 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
+.|.+.+.+++.+-|.+...|+++|....+.|+++.|.+.|++.++++|.+..
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 88999999999999999999999999999999999999999999999998754
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.035 Score=52.92 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=88.6
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHH
Q 012162 26 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 105 (469)
Q Consensus 26 ~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 105 (469)
...+...+.+|++.+|....++.++-.|.+..++..--.+++.+|+. ......+++.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~-----------------------~~~k~ai~kI 163 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ-----------------------IGKKNAIEKI 163 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch-----------------------hhhhhHHHHh
Confidence 34455677889999999999999999999998888777888889988 7777788888
Q ss_pred hhc-cccchHHHH---HHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 106 LNL-QSNSMKSHL---LKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 106 l~l-~p~~~~~~~---~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
+-. +|+.|-.-| ..+..+...|-|++|.+.-++|+++||+|.-+...+..+-+
T Consensus 164 ip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle 220 (491)
T KOG2610|consen 164 IPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLE 220 (491)
T ss_pred ccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence 876 776644333 35566789999999999999999999999887766655544
No 280
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0044 Score=60.02 Aligned_cols=65 Identities=23% Similarity=0.546 Sum_probs=49.0
Q ss_pred ccccccccccccc------cEEccCCCcccHHHHHHHcccCC-CccccccccccC---CCcccCcccHHHHHHHh
Q 012162 177 DFDCTLCLKLLYE------PITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLFIT---PRTCAVSVTLNSIIQKN 241 (469)
Q Consensus 177 ~~~C~ic~~~~~~------p~~~~cgh~~C~~Ci~~~~~~~~-~CP~Cr~~~~~~---~~~~~~~~~l~~~~~~~ 241 (469)
...|.+|.+.+++ |..+.|||++|..|+.+....+. .||.||.+.... .+.+..|..+..+++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3578888876653 67788999999999999887765 699999985221 24567777777777664
No 281
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.93 E-value=0.0018 Score=67.17 Aligned_cols=46 Identities=24% Similarity=0.527 Sum_probs=38.0
Q ss_pred cccccccccccccccEE---ccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 176 DDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~---~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
..-.|++|+..+.+-.. .+|+|-||..||..|......||+||..+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 34478888877766532 58999999999999998888999999987
No 282
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.93 E-value=0.029 Score=52.79 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
++|...++.|+.++|+++.++...|......++.-+|=.+|-+||.++|.|.++.-..
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 9999999999999999999999999999999999999999999999999998876443
No 283
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.90 E-value=0.02 Score=61.04 Aligned_cols=93 Identities=18% Similarity=0.127 Sum_probs=83.0
Q ss_pred HHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcc
Q 012162 30 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 109 (469)
Q Consensus 30 ~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 109 (469)
-.....++|.+|+...++.++-.|+.+.+....|..+.++|++ ++|...++..-...
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~-----------------------~ea~~~Le~~~~~~ 73 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKG-----------------------DEALKLLEALYGLK 73 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCc-----------------------hhHHHHHhhhccCC
Confidence 3456778999999999999999999998888899999999999 99997777777777
Q ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 110 SNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 110 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
+++...+-.+-.+|..+|++++|...|+++...+|+
T Consensus 74 ~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 74 GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 888888899999999999999999999999999998
No 284
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.79 E-value=0.04 Score=42.89 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC--chhHHHHHHHHHhhh
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS--NPLQASLQNLERTTA 161 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~ 161 (469)
...+..+++.++.+|++..+.+.+|..+...|++++|++.+-..++.++++ ..++..+-.+=+.++
T Consensus 5 ~~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 5 APDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp -HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 345678899999999999999999999999999999999999999999876 456555555544444
No 285
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0036 Score=61.75 Aligned_cols=48 Identities=40% Similarity=0.788 Sum_probs=36.6
Q ss_pred Cccccccccccccccc-----------------cEEccCCCcccHHHHHHHcc-cCCCcccccccc
Q 012162 174 RTDDFDCTLCLKLLYE-----------------PITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVL 221 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~-----------------p~~~~cgh~~C~~Ci~~~~~-~~~~CP~Cr~~~ 221 (469)
.+....|.||.....- =..+||.|.|.+.|+.+|.+ .+-.||+||.++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pL 633 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPL 633 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCC
Confidence 4455689999864321 12369999999999999998 444899999986
No 286
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.048 Score=49.78 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=66.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+.+....++..|+|-+++++-+..+..+|+|..+|+.||.++...=+. ++|..+
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~-----------------------~eA~~D 286 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNE-----------------------AEAKAD 286 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCH-----------------------HHHHHH
Confidence 455678889999999999999999999999999999999999999777676 999999
Q ss_pred HHHHhhccccchHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLK 119 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~ 119 (469)
+.++++++|.-..+..+-
T Consensus 287 ~~~vL~ldpslasvVsrE 304 (329)
T KOG0545|consen 287 LQKVLELDPSLASVVSRE 304 (329)
T ss_pred HHHHHhcChhhHHHHHHH
Confidence 999999999876665443
No 287
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.75 E-value=0.091 Score=48.61 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=92.2
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc---cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI---VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
......+.++++.++|+.|+...++-+++.|+++. +++-+|.+++..-+. ..+|+ ..+..|+
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~--------------~~rDq-~~~~~A~ 136 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD--------------VTRDQ-SAARAAF 136 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc--------------cccCH-HHHHHHH
Confidence 45677899999999999999999999999999874 344445553322221 12222 3347899
Q ss_pred HHHHHHhhccccchH---------------HH--HHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 100 KDAEKLLNLQSNSMK---------------SH--LLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 100 ~~~~~al~l~p~~~~---------------~~--~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
..++..++.-|++.- +. ...|..|.+.|.|..|+.-++..++--|+-....+.+..+.+....
T Consensus 137 ~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 137 AAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred HHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 999999999888633 11 2346668889999999999999999988888888888777765443
No 288
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0038 Score=57.57 Aligned_cols=41 Identities=29% Similarity=0.780 Sum_probs=34.9
Q ss_pred ccccccccccccccEEccCCCc-ccHHHHHHHcccCCCcccccccc
Q 012162 177 DFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
...|.||++.-.+-+-++|||. -|..|-... ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHH
Confidence 6689999999999999999998 788885433 3899999876
No 289
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0085 Score=55.53 Aligned_cols=44 Identities=32% Similarity=0.805 Sum_probs=35.0
Q ss_pred ccccccc-cccccE----EccCCCcccHHHHHHHcccCC-Cccccccccc
Q 012162 179 DCTLCLK-LLYEPI----TTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLF 222 (469)
Q Consensus 179 ~C~ic~~-~~~~p~----~~~cgh~~C~~Ci~~~~~~~~-~CP~Cr~~~~ 222 (469)
.||.|.- .+.+|- +.+|||+.|.+|....+..+. .||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 4888873 566772 349999999999999887665 7999998874
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.63 E-value=0.013 Score=36.93 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.1
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCC
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIK 52 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 52 (469)
++...|..+.+.|+|++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36788999999999999999999976543
No 291
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.59 E-value=0.032 Score=60.96 Aligned_cols=100 Identities=7% Similarity=-0.050 Sum_probs=51.4
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC--cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
..+......+.+.|+.++|...|+...+..+-. ...|..+..+|.+.|++ ++|.+
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~-----------------------~eA~~ 483 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL-----------------------DEAYA 483 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH-----------------------HHHHH
Confidence 334445556666666666666666665432222 23455555566666665 55555
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
.+++. ...|+ ...|..+..++...|+++.|...+++.++++|++.
T Consensus 484 ~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 484 MIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 44432 12222 23444555555555555555555555555555543
No 292
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.11 Score=48.08 Aligned_cols=66 Identities=20% Similarity=0.054 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
..|.-.|+..-+.-|..+......|.+...+|+|++|...++.||..++++++...++-.+-..++
T Consensus 190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLG 255 (299)
T ss_pred hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 677777777777666677888889999999999999999999999999999887766655444433
No 293
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.53 E-value=0.0052 Score=42.05 Aligned_cols=45 Identities=29% Similarity=0.687 Sum_probs=35.1
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
....|-+|...-...+.+||||..|+.|.... +-+-||.|..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~ 50 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFE 50 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCccc
Confidence 34567788877778889999999999996432 3446999999874
No 294
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.51 E-value=0.025 Score=33.34 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=29.3
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 55 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~ 55 (469)
..+...|..++..|++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 356788999999999999999999999998863
No 295
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.015 Score=53.16 Aligned_cols=48 Identities=21% Similarity=0.485 Sum_probs=38.0
Q ss_pred cccccccccccccccc----------EEccCCCcccHHHHHHHcc--cCCCccccccccc
Q 012162 175 TDDFDCTLCLKLLYEP----------ITTPCGHSFCRSCLFQSMD--RGNKCPLCRAVLF 222 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p----------~~~~cgh~~C~~Ci~~~~~--~~~~CP~Cr~~~~ 222 (469)
-++-.|.+|.+.+... ..++|+|.|...||..|-- ...+||-|.+.+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 3556799999766543 4689999999999999964 4458999998873
No 296
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.0093 Score=57.12 Aligned_cols=47 Identities=32% Similarity=0.709 Sum_probs=35.8
Q ss_pred CCccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 173 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.......|.+|++..++.+-+||||.-| |..-.. +...||+||+.+.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHH
Confidence 3445568999999999988999999977 754332 3345999998763
No 297
>PLN03077 Protein ECB2; Provisional
Probab=95.41 E-value=0.064 Score=60.04 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhc
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILS 138 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 138 (469)
+.|...++++++++|+++..|..++++|...|++++|....+.
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 5666667777788888888888888888888888887776644
No 298
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.40 E-value=0.0097 Score=63.24 Aligned_cols=48 Identities=27% Similarity=0.769 Sum_probs=37.1
Q ss_pred Cccccccccccccccc-----c--EEccCCCcccHHHHHHHcccC--CCcccccccc
Q 012162 174 RTDDFDCTLCLKLLYE-----P--ITTPCGHSFCRSCLFQSMDRG--NKCPLCRAVL 221 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~-----p--~~~~cgh~~C~~Ci~~~~~~~--~~CP~Cr~~~ 221 (469)
.+...+|+||.-++.. | ..-.|.|.|...|+.+|+..+ ..||.||..+
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 3455689999987662 2 234699999999999999854 4799999765
No 299
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.015 Score=52.89 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 154 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 154 (469)
..|+..|.+||.++|..+..|.+.|.+++++.+++.+.....+|++++|+....+..+.
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999876655543
No 300
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.39 E-value=0.11 Score=51.88 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=92.1
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+..-|.--..++++..|...|++||..+-.+..+|...+.+-++.+.. ..|-..+
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v-----------------------NhARNv~ 130 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV-----------------------NHARNVW 130 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH-----------------------hHHHHHH
Confidence 44455566666788999999999999999999999999999999888888 8999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
++|+.+-|.-...||..-..-..+|+...|.+.|++-++..|+-....
T Consensus 131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~ 178 (677)
T KOG1915|consen 131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWL 178 (677)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHH
Confidence 999999999999999888888899999999999999999999866543
No 301
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.35 E-value=0.051 Score=56.10 Aligned_cols=97 Identities=21% Similarity=0.171 Sum_probs=74.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC----CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPG----DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
+--+..+|..+...|+.++|+..|++++..... ....++.+|.+++.+.+| ++
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w-----------------------~~ 323 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW-----------------------EE 323 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH-----------------------HH
Confidence 445567888999999999999999999864433 346778899999999999 99
Q ss_pred HHHHHHHHhhccccchHHH--HHHHHHHHHHhHH-------HHHHHHHhccccC
Q 012162 98 ALKDAEKLLNLQSNSMKSH--LLKANALILLERY-------DMARDAILSGLQV 142 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~--~~~g~~~~~~~~~-------~~A~~~~~~al~~ 142 (469)
|...+.+..+.+. +.+++ |..|-++..+|+. ++|...|.++-.+
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999998654 44443 4457788888888 7777777766443
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.32 E-value=0.028 Score=34.14 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 55 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~ 55 (469)
++++..|..++..|++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 357889999999999999999999999998863
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.32 E-value=0.033 Score=38.45 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=34.6
Q ss_pred cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHH
Q 012162 58 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANA 122 (469)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 122 (469)
.++.+|.+++++|+| .+|...++.+++++|+|..+......+
T Consensus 3 ~lY~lAig~ykl~~Y-----------------------~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEY-----------------------EKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhH-----------------------HHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467789999999999 999999999999999998876665544
No 304
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.24 E-value=0.0087 Score=54.33 Aligned_cols=59 Identities=32% Similarity=0.776 Sum_probs=37.1
Q ss_pred ccccccccc-ccccE-EccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhc
Q 012162 178 FDCTLCLKL-LYEPI-TTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 242 (469)
Q Consensus 178 ~~C~ic~~~-~~~p~-~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~ 242 (469)
..|--|..- -.+|. .+.|+|.||..|...... ..||.|++.+.. ...+..|..-|..+|
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~----i~l~~slp~~ik~~F 64 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIRI----IQLNRSLPTDIKSYF 64 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc--cccccccceeee----eecccccchhHHHHc
Confidence 457666642 24553 479999999999754432 289999998743 233333444455554
No 305
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.009 Score=57.83 Aligned_cols=44 Identities=27% Similarity=0.749 Sum_probs=36.5
Q ss_pred ccccccccccccc-----EEccCCCcccHHHHHHHcccC--CCcccccccc
Q 012162 178 FDCTLCLKLLYEP-----ITTPCGHSFCRSCLFQSMDRG--NKCPLCRAVL 221 (469)
Q Consensus 178 ~~C~ic~~~~~~p-----~~~~cgh~~C~~Ci~~~~~~~--~~CP~Cr~~~ 221 (469)
.+|+||++-+.-| +++.|||-|-..||++|+.+. ..||.|..+-
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 4799999977766 568999999999999999643 2599998765
No 306
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.078 Score=54.65 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=85.6
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
..+++.|...|+..+|..|+..|...+..-|.| +....+++.||+.+.+. +
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL-----------------------D 411 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL-----------------------D 411 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH-----------------------H
Confidence 456788999999999999999999999887765 46777889999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
.|.+.+++|-+.+|.++-..+..-.+....|.-++|+....+....
T Consensus 412 ~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 412 NAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999999998888888888999999999888776654
No 307
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.0086 Score=61.07 Aligned_cols=62 Identities=19% Similarity=0.391 Sum_probs=43.7
Q ss_pred ccccccccccccc----ccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHH
Q 012162 176 DDFDCTLCLKLLY----EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSI 237 (469)
Q Consensus 176 ~~~~C~ic~~~~~----~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~ 237 (469)
+.+.|+||+..|. .||.+-|||+.|+.|+......++.||..........+..+.|.++-..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp~~~De~~~~~~~~e~p~n~alL~~ 75 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCPTKRDEDSSLMQLKEEPRNYALLRR 75 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCCCCccccchhcChhhcchhHHHHHh
Confidence 4568999977654 5899999999999999988877655555544444444556666555443
No 308
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.10 E-value=0.04 Score=47.08 Aligned_cols=63 Identities=19% Similarity=0.137 Sum_probs=52.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...+..+...|++++|+..+++++..+|.+-.+|..+-.+|...|++ .+|+..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~-----------------------~~A~~~ 118 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR-----------------------AEALRV 118 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH-----------------------HHHHHH
Confidence 345556677788899999999999999999999999999999999999999 899988
Q ss_pred HHHHhh
Q 012162 102 AEKLLN 107 (469)
Q Consensus 102 ~~~al~ 107 (469)
|++..+
T Consensus 119 Y~~~~~ 124 (146)
T PF03704_consen 119 YERYRR 124 (146)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
No 309
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.04 E-value=0.2 Score=43.98 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=79.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC--CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
...+..+++..|.-+++..|...+++..+.+|. .|+.....|.+|...|++ ..|.
T Consensus 124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~-----------------------a~Ae 180 (251)
T COG4700 124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY-----------------------ADAE 180 (251)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCc-----------------------hhHH
Confidence 566778899999999999999999999999986 466677778899999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhc
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILS 138 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 138 (469)
..++.+++.-|+ +.+....|.-+..+|+.++|...|..
T Consensus 181 safe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 181 SAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 999999999987 57777888888999988887665543
No 310
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.01 E-value=0.029 Score=59.89 Aligned_cols=43 Identities=44% Similarity=0.991 Sum_probs=37.8
Q ss_pred cccccccccccccEEccCCCcccHHHHHHHcccCC--Ccccccccc
Q 012162 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN--KCPLCRAVL 221 (469)
Q Consensus 178 ~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~--~CP~Cr~~~ 221 (469)
..|.+|.+ ...++.++|||.||..|+...++... .||.||..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 78999999 77889999999999999999887543 699999876
No 311
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.98 E-value=0.02 Score=42.05 Aligned_cols=31 Identities=29% Similarity=0.757 Sum_probs=27.7
Q ss_pred ccCCCcccHHHHHHHcccCCCcccccccccc
Q 012162 193 TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223 (469)
Q Consensus 193 ~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~ 223 (469)
-.|.|.|.-.||.+|+.....||.||++...
T Consensus 52 G~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred EecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 3699999999999999988899999998743
No 312
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.97 E-value=0.025 Score=51.13 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=56.8
Q ss_pred HHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcc
Q 012162 30 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 109 (469)
Q Consensus 30 ~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 109 (469)
....+.+|.+.|.+.|.+|+.+.|.....|+..|....+.|++ +.|.+.+++.++++
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~-----------------------daAa~a~~~~L~ld 59 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEF-----------------------DAAAAAYEEVLELD 59 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccH-----------------------HHHHHHHHHHHcCC
Confidence 3456789999999999999999999999999999999999999 99999999999999
Q ss_pred ccchH
Q 012162 110 SNSMK 114 (469)
Q Consensus 110 p~~~~ 114 (469)
|.+.-
T Consensus 60 p~D~~ 64 (287)
T COG4976 60 PEDHG 64 (287)
T ss_pred ccccc
Confidence 98743
No 313
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.02 Score=51.58 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=42.1
Q ss_pred ccccccccccccccccE----EccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 175 TDDFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~----~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
+..+.|++|.+.+.+.+ .-+|||.+|..|.++.......||+|..++.
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 46789999999998863 4599999999999999988889999999884
No 314
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.94 E-value=0.019 Score=39.04 Aligned_cols=40 Identities=23% Similarity=0.714 Sum_probs=31.4
Q ss_pred ccccccc--cccccEEccCC-----CcccHHHHHHHcccC--CCccccc
Q 012162 179 DCTLCLK--LLYEPITTPCG-----HSFCRSCLFQSMDRG--NKCPLCR 218 (469)
Q Consensus 179 ~C~ic~~--~~~~p~~~~cg-----h~~C~~Ci~~~~~~~--~~CP~Cr 218 (469)
.|.||++ .-.+|...||. |.+...|+.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3788886 45567788985 779999999999644 4799995
No 315
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.81 E-value=0.099 Score=52.54 Aligned_cols=94 Identities=19% Similarity=0.135 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHH
Q 012162 39 EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLL 118 (469)
Q Consensus 39 ~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 118 (469)
..-...|++|+.--+.|..+|.+...-..+.+.+ .+.-..|.+++..+|++++.|..
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~-----------------------~~v~ki~~~~l~~Hp~~~dLWI~ 144 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTY-----------------------GEVKKIFAAMLAKHPNNPDLWIY 144 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcch-----------------------hHHHHHHHHHHHhCCCCchhHHh
Confidence 3446789999999998888887755444444557 78888999999999999999999
Q ss_pred HHHHHHHHhH-HHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 119 KANALILLER-YDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 119 ~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
-|.-.+.-+. .+.|.+.|.++|+.+|+++.++...=+
T Consensus 145 aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 145 AAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 8887766555 999999999999999999987755433
No 316
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.69 E-value=0.085 Score=53.86 Aligned_cols=99 Identities=14% Similarity=-0.010 Sum_probs=84.0
Q ss_pred HHhHHHHH-HhccHHHHHHHHHHHhcCCCCCc--ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 26 VQKGNRAF-RESNFEEAISNYSRANNIKPGDP--IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 26 ~~~g~~~~-~~~~~~~A~~~y~~al~~~p~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
...+..|. .+|+..+|..+|..|+-..|... .++..+|.++.++|.. .+|--.+
T Consensus 216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~s-----------------------adA~iIL 272 (886)
T KOG4507|consen 216 HNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFS-----------------------ADAAVIL 272 (886)
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccc-----------------------cchhhee
Confidence 34444443 56999999999999999887643 6778899999999987 7777778
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
..|+.-.|.....+|.+|.++..+|+|......|..+.+.+|...
T Consensus 273 hAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 273 HAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred ehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 888888888888899999999999999999999999999999654
No 317
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.67 E-value=0.031 Score=53.42 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=64.4
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
....+.-+..+|.++++.+.+..||..|..|++++|+.+.-|-.++.+...+|+| .+
T Consensus 144 np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~-----------------------e~ 200 (377)
T KOG1308|consen 144 NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW-----------------------EE 200 (377)
T ss_pred CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch-----------------------HH
Confidence 3344677788999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhcccc
Q 012162 98 ALKDAEKLLNLQSN 111 (469)
Q Consensus 98 A~~~~~~al~l~p~ 111 (469)
|..++..|.+++-+
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999988743
No 318
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.0083 Score=43.61 Aligned_cols=44 Identities=25% Similarity=0.714 Sum_probs=32.9
Q ss_pred ccccccccccc------------cEEc-cCCCcccHHHHHHHcccC---CCccccccccc
Q 012162 179 DCTLCLKLLYE------------PITT-PCGHSFCRSCLFQSMDRG---NKCPLCRAVLF 222 (469)
Q Consensus 179 ~C~ic~~~~~~------------p~~~-~cgh~~C~~Ci~~~~~~~---~~CP~Cr~~~~ 222 (469)
.|.||...|.. |.+. -|.|.|-..||.+|+... ..||.||+...
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 67777766643 3332 599999999999998732 36999999764
No 319
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.59 E-value=0.0065 Score=44.81 Aligned_cols=47 Identities=23% Similarity=0.678 Sum_probs=23.2
Q ss_pred cccccccccccc-c---cEE----ccCCCcccHHHHHHHccc---C--------CCcccccccccc
Q 012162 177 DFDCTLCLKLLY-E---PIT----TPCGHSFCRSCLFQSMDR---G--------NKCPLCRAVLFI 223 (469)
Q Consensus 177 ~~~C~ic~~~~~-~---p~~----~~cgh~~C~~Ci~~~~~~---~--------~~CP~Cr~~~~~ 223 (469)
...|.||..... + |.. ..|+..|...||.+|+.. + ..||.|+.++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 458999998654 2 322 379999999999999752 1 149999998853
No 320
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.4 Score=44.59 Aligned_cols=92 Identities=11% Similarity=0.138 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHH
Q 012162 36 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS 115 (469)
Q Consensus 36 ~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 115 (469)
+.+..|.-.|++.-+-.|-.+..+.+.|.|++.+++| ++|...++.|+..+++++++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~-----------------------eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY-----------------------EEAESLLEEALDKDAKDPET 243 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH-----------------------HHHHHHHHHHHhccCCCHHH
Confidence 5688899999998886777889999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HhccccCCCCCchhH
Q 012162 116 HLLKANALILLERYDMARDA-ILSGLQVDPFSNPLQ 150 (469)
Q Consensus 116 ~~~~g~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~ 150 (469)
+.++-.+-..+|.-.++..- +.+....+|+++-+.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 99998888889998777654 445555667666543
No 321
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.36 E-value=0.094 Score=40.79 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccc--hHHHHH
Q 012162 41 AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS--MKSHLL 118 (469)
Q Consensus 41 A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~ 118 (469)
.+..++++++.+|+|..+.+.+|..++..|++ ++|++.+-.+++.++++ ..+.-.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~-----------------------e~Al~~Ll~~v~~dr~~~~~~ar~~ 63 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDY-----------------------EEALDQLLELVRRDRDYEDDAARKR 63 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHCC-TTCCCCHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCccccccHHHHH
Confidence 46778999999999999999999999999999 99999999999999887 334444
Q ss_pred HHHHHHHHhHHH
Q 012162 119 KANALILLERYD 130 (469)
Q Consensus 119 ~g~~~~~~~~~~ 130 (469)
+=.++..+|.-+
T Consensus 64 ll~~f~~lg~~~ 75 (90)
T PF14561_consen 64 LLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHH-TT-
T ss_pred HHHHHHHcCCCC
Confidence 444445555433
No 322
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.36 E-value=0.03 Score=37.45 Aligned_cols=41 Identities=37% Similarity=0.929 Sum_probs=21.0
Q ss_pred ccccccccccc---E-EccCCCcccHHHHHHHcc-cCCCccccccc
Q 012162 180 CTLCLKLLYEP---I-TTPCGHSFCRSCLFQSMD-RGNKCPLCRAV 220 (469)
Q Consensus 180 C~ic~~~~~~p---~-~~~cgh~~C~~Ci~~~~~-~~~~CP~Cr~~ 220 (469)
|++|.+.+... + .=+||+..|+.|.....+ .+..||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 56777666322 1 127999999999999886 46799999976
No 323
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.023 Score=54.72 Aligned_cols=45 Identities=29% Similarity=0.707 Sum_probs=33.3
Q ss_pred ccccccccccccccE---Ec-cCCCcccHHHHHHHccc--C-CCcccccccc
Q 012162 177 DFDCTLCLKLLYEPI---TT-PCGHSFCRSCLFQSMDR--G-NKCPLCRAVL 221 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~---~~-~cgh~~C~~Ci~~~~~~--~-~~CP~Cr~~~ 221 (469)
...|.||.+.+.+-- .+ .|||+|...|+.+|++. + -.||.|+..+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 357999976554432 23 49999999999999973 3 3699999443
No 324
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=0.33 Score=44.26 Aligned_cols=99 Identities=20% Similarity=0.118 Sum_probs=61.3
Q ss_pred HHHHHhccHHHHHHHHHHHhcCCCCCc------ccccchhHHHHHH-HhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 30 NRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 30 ~~~~~~~~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
...|++++..+|+.++++|+++-.+-. ..+..+|..|-.- .++ ++|+.+|
T Consensus 81 ~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~-----------------------ekaI~~Y 137 (288)
T KOG1586|consen 81 ANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDF-----------------------EKAIAHY 137 (288)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHH-----------------------HHHHHHH
Confidence 334455677777777777776643321 1222333333221 344 7888888
Q ss_pred HHHhhccc------cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHH
Q 012162 103 EKLLNLQS------NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 151 (469)
Q Consensus 103 ~~al~l~p------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (469)
++|-+.-. .--+.+...|..-..+++|.+|++.|++...-.-+|+.++-
T Consensus 138 E~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 138 EQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 88866422 22345666677778899999999999998876666665443
No 325
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=94.19 E-value=0.22 Score=49.96 Aligned_cols=121 Identities=18% Similarity=0.171 Sum_probs=63.9
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc--------ccccc--hhHHH---HHHHhhhccCCCCCcccCc
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP--------IVLGN--RSSAY---IRISQFLKHRPPSASEYRP 85 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~--------~~~~~--~a~~~---~~~~~~~~~~~~~~~~~~~ 85 (469)
..........|..++..|+|.+|+..|+..|..-|-.. .+... ++.=| +++.-.++..+.
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~------- 273 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPK------- 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-T-------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------
Confidence 34455566789999999999999999999986643211 11111 11111 111111111000
Q ss_pred cCCCCCchhHHHH--HHHHHHHhhccccchHHHHHHHHHH-HHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 86 LNGLDPTTHAELA--LKDAEKLLNLQSNSMKSHLLKANAL-ILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 86 ~~~~~~~~~~~~A--~~~~~~al~l~p~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
++....... +..|=...+|.|.+-..-.+.|+.. ++.++|--|....++.|+++|..+.+.
T Consensus 274 ----~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 274 ----DPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp ----TTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred ----cchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 000000111 1222233456777766666666654 789999999999999999999765443
No 326
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.18 E-value=0.17 Score=51.11 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=63.0
Q ss_pred HhHHHHHHhccHHHHHHHHHHHhcCCCC--CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHH
Q 012162 27 QKGNRAFRESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 104 (469)
Q Consensus 27 ~~g~~~~~~~~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 104 (469)
..|..+.+.|+.++||+.|...++..|. +..+++++..+++.++.| .++...+.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y-----------------------ad~q~lL~k 320 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY-----------------------ADVQALLAK 320 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH-----------------------HHHHHHHHH
Confidence 4566666777777777777777776664 345677777777777777 666666665
Q ss_pred Hhhc-cccchHHHHHHHHHHHH-HhH---------------HHHHHHHHhccccCCCCCchhHHHHH
Q 012162 105 LLNL-QSNSMKSHLLKANALIL-LER---------------YDMARDAILSGLQVDPFSNPLQASLQ 154 (469)
Q Consensus 105 al~l-~p~~~~~~~~~g~~~~~-~~~---------------~~~A~~~~~~al~~~p~~~~~~~~~~ 154 (469)
.-++ -|+++...|..|....+ .++ -..|.+++.+|.+.||.-+.....++
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K 387 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMK 387 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccC
Confidence 5333 25555555555543321 111 12356667777777776665544433
No 327
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.46 Score=44.11 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=60.5
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 103 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 103 (469)
.+.+.+..+.-.+||..|...|++.+..||.++.+-++.|.|++.+|+. ..|++..+
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l-----------------------~DAiK~~e 310 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL-----------------------KDALKQLE 310 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH-----------------------HHHHHHHH
Confidence 3445666777889999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccch
Q 012162 104 KLLNLQSNSM 113 (469)
Q Consensus 104 ~al~l~p~~~ 113 (469)
.++...|...
T Consensus 311 ~~~~~~P~~~ 320 (366)
T KOG2796|consen 311 AMVQQDPRHY 320 (366)
T ss_pred HHhccCCccc
Confidence 9999999753
No 328
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.01 E-value=0.38 Score=48.60 Aligned_cols=94 Identities=19% Similarity=0.040 Sum_probs=65.5
Q ss_pred HHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHH-----HHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHH
Q 012162 30 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAY-----IRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 104 (469)
Q Consensus 30 ~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 104 (469)
..+.+..++.+-++.-.+||+++|+.+.+|.-+|.-. -...-| .+|++..+.
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~-----------------------rqAvkAgE~ 232 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELL-----------------------RQAVKAGEA 232 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHH-----------------------HHHHHHHHH
Confidence 3566778999999999999999999988876655421 111112 334444443
Q ss_pred Hhhccc----------------c--chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 105 LLNLQS----------------N--SMKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 105 al~l~p----------------~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
++..+. . .+.+-.++|++..++|+.++|++.|+..++.+|..
T Consensus 233 ~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~ 292 (539)
T PF04184_consen 233 SLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL 292 (539)
T ss_pred hhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc
Confidence 333221 1 13355778999999999999999999999988853
No 329
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.00 E-value=0.13 Score=57.84 Aligned_cols=98 Identities=13% Similarity=-0.018 Sum_probs=78.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc-----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
.......|..++..|++++|...++++++..|... .++..+|.++...|++ +
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~-----------------------~ 508 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL-----------------------A 508 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH-----------------------H
Confidence 34444578888999999999999999998655432 3456678888889999 9
Q ss_pred HHHHHHHHHhhcccc------chHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 97 LALKDAEKLLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 97 ~A~~~~~~al~l~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
+|...+++++..... ...++..+|.++...|++++|...+++++.+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999875322 1346678899999999999999999999876
No 330
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.97 E-value=0.2 Score=56.79 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHHHhccHHHHHHHHHHHhcCC-CCCcccccchhHHHHHHHhh
Q 012162 30 NRAFRESNFEEAISNYSRANNIK-PGDPIVLGNRSSAYIRISQF 72 (469)
Q Consensus 30 ~~~~~~~~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~ 72 (469)
..+.+.|++++|...|+++.+.+ +.+...|..+..+|.+.|++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 34444555555555555554443 22333444444444444444
No 331
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.97 E-value=0.25 Score=56.00 Aligned_cols=47 Identities=9% Similarity=-0.029 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 96 ELALKDAEKLLNLQ-SNSMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 96 ~~A~~~~~~al~l~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
++|.+.++...+.+ +.+...|..+..+|.+.|++++|+..|++..+.
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 66666666665554 334455666666666666666666666665543
No 332
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.94 E-value=0.053 Score=51.33 Aligned_cols=48 Identities=25% Similarity=0.534 Sum_probs=38.9
Q ss_pred Cccccccccccccccc--cE--EccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 174 RTDDFDCTLCLKLLYE--PI--TTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~--p~--~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
....+.||++...|.. ++ ..+|||.|+..|+.+.- .+..||+|..++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 4578899999988854 22 35999999999999884 4567999999985
No 333
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.90 E-value=0.31 Score=53.22 Aligned_cols=100 Identities=11% Similarity=-0.078 Sum_probs=80.0
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcC--CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
+...|......|.+.|++++|++.|++..+. .|+ ...|..+..++.+.|.. ++|
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~-----------------------~~a 445 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLS-----------------------EQG 445 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcH-----------------------HHH
Confidence 4556778888999999999999999998764 453 45567777788889999 999
Q ss_pred HHHHHHHhhc---cccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 99 LKDAEKLLNL---QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 99 ~~~~~~al~l---~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
...++...+. .|+ ...|..+..+|...|++++|.+.+++.- ..|+.
T Consensus 446 ~~~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~ 494 (697)
T PLN03081 446 WEIFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAYAMIRRAP-FKPTV 494 (697)
T ss_pred HHHHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCH
Confidence 9999998763 343 3578889999999999999999998753 44543
No 334
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.031 Score=43.26 Aligned_cols=29 Identities=28% Similarity=0.569 Sum_probs=26.5
Q ss_pred ccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 193 TPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 193 ~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
-.|.|.|...||.+|+.....||+|.++-
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 36999999999999999999999998865
No 335
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.67 E-value=0.21 Score=47.95 Aligned_cols=111 Identities=13% Similarity=0.016 Sum_probs=83.5
Q ss_pred HHHHHhHHHHHH-hccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 23 FDLVQKGNRAFR-ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 23 ~~~~~~g~~~~~-~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
..|...|...+. .++.+.|...|+++++.-|.+..+|......+..+++. +.|-..
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~-----------------------~~aR~l 92 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI-----------------------NNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH-----------------------HHHHHH
Confidence 345555666555 57777799999999999999999988888888888888 999999
Q ss_pred HHHHhhccccch---HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 102 AEKLLNLQSNSM---KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 102 ~~~al~l~p~~~---~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
+++++..-|... ..|......-...|+.+.....++++.+.-|++..+.....+.
T Consensus 93 fer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 93 FERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 999999876655 3555556666789999999999999999999866655444433
No 336
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.63 E-value=0.055 Score=50.32 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=55.5
Q ss_pred HHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhcccCCCCCCCccccccccccccccc-c--EEccCCCcccHHHHHHH
Q 012162 131 MARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTLCLKLLYE-P--ITTPCGHSFCRSCLFQS 207 (469)
Q Consensus 131 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ic~~~~~~-p--~~~~cgh~~C~~Ci~~~ 207 (469)
+-...+...++.+-+-+.+...++.+...|...+- ...+|.||+--|.+ | ..++|-|.|...|+.++
T Consensus 79 ~i~~~~~~iikq~~g~pii~~lie~~~e~LT~nn~----------p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 79 EIQRQIQEIIKQNSGMPIICQLIEHCSEFLTENNH----------PNGQCVICLYGFASSPAFTVTACDHYMHFACLARY 148 (368)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHcccCCC----------CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHH
Confidence 33344444455555666666666666666655443 66789999976654 4 35899999999999876
Q ss_pred ccc-----------------------CCCcccccccccc
Q 012162 208 MDR-----------------------GNKCPLCRAVLFI 223 (469)
Q Consensus 208 ~~~-----------------------~~~CP~Cr~~~~~ 223 (469)
+.. ...||+||..+..
T Consensus 149 l~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 149 LTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 431 1249999998844
No 337
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.037 Score=49.98 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=29.3
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM 208 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~ 208 (469)
+.--|++|++...+||+.+-||.||+.||.+++
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 444689999999999999999999999998764
No 338
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.44 E-value=0.44 Score=41.05 Aligned_cols=112 Identities=17% Similarity=0.031 Sum_probs=90.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+..........++.+.+...+...--+.|..+.+-..-|+.++..|+| .+|+..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w-----------------------~dA~rl 66 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDW-----------------------DDALRL 66 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 567778888889999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
++.+..-.|..+.+--.++.+++.+|+.+= ..+-..+++-.+ ++.+....+.+..
T Consensus 67 Lr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 67 LRELEERAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred HHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 999999999999888899999988887632 112233444443 5655555555544
No 339
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.41 E-value=0.061 Score=50.96 Aligned_cols=49 Identities=27% Similarity=0.723 Sum_probs=39.3
Q ss_pred CCccccccccccccccccEEccCCCcccHHHHHHHc--ccCCCcccccccc
Q 012162 173 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM--DRGNKCPLCRAVL 221 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~--~~~~~CP~Cr~~~ 221 (469)
-.++...|.||-.-+.-...+||+|..|.-|....- -..+.||.||...
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 345667899999887777789999999999987643 3567899999764
No 340
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.36 E-value=0.28 Score=45.95 Aligned_cols=71 Identities=21% Similarity=0.384 Sum_probs=64.0
Q ss_pred HHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcc
Q 012162 30 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 109 (469)
Q Consensus 30 ~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 109 (469)
..+...++++.|...-++.+.++|.++.-+.-+|.+|.++|-+ .-|+.+++..++.-
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~-----------------------~vAl~dl~~~~~~~ 245 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCY-----------------------HVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCc-----------------------hhhHHHHHHHHHhC
Confidence 4567789999999999999999999999999999999999999 99999999999999
Q ss_pred ccchHHHHHHHHHH
Q 012162 110 SNSMKSHLLKANAL 123 (469)
Q Consensus 110 p~~~~~~~~~g~~~ 123 (469)
|+.+.+-..++...
T Consensus 246 P~~~~a~~ir~~l~ 259 (269)
T COG2912 246 PDDPIAEMIRAQLL 259 (269)
T ss_pred CCchHHHHHHHHHH
Confidence 99988776665543
No 341
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.31 E-value=0.15 Score=46.60 Aligned_cols=100 Identities=18% Similarity=0.027 Sum_probs=69.4
Q ss_pred HHHhccHHHHHHHHHHHhcC----CCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHH
Q 012162 32 AFRESNFEEAISNYSRANNI----KPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 104 (469)
Q Consensus 32 ~~~~~~~~~A~~~y~~al~~----~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 104 (469)
+-....+++|++.|.-|+-. ..+. +.++..+|++|..+++. .....+...|+..+.+
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~----------------~~E~~fl~~Al~~y~~ 150 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE----------------ENEKRFLRKALEFYEE 150 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH----------------HHHHHHHHHHHHHHHH
Confidence 33456788999999888744 1111 35556667777666653 1112233788888888
Q ss_pred Hhhcccc------chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 105 LLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 105 al~l~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
|++.... .....|.+|.....+|++++|+.+|.+++...-.+.
T Consensus 151 a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 151 AYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 8875532 356888999999999999999999999998544333
No 342
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.19 E-value=0.2 Score=56.42 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=78.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
+..+...|..+...|++++|...|.+++...... ..++.++|.+++..|++
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~----------------------- 547 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL----------------------- 547 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH-----------------------
Confidence 3445667888899999999999999999764432 23556778889999999
Q ss_pred HHHHHHHHHHhhcccc--------chHHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 96 ELALKDAEKLLNLQSN--------SMKSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
++|...+++++.+... ....+..+|.++...|++++|...+.+++.+..
T Consensus 548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 9999999998886321 223456788999999999999999999988644
No 343
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=0.55 Score=42.83 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=75.1
Q ss_pred HHhHHHHHHh-ccHHHHHHHHHHHhcCCCCC-c-----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 26 VQKGNRAFRE-SNFEEAISNYSRANNIKPGD-P-----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 26 ~~~g~~~~~~-~~~~~A~~~y~~al~~~p~~-~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
...|..|-.. .++++||.+|++|-+.-..+ . ..+...|..-..+++| .+|
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY-----------------------~~A 173 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY-----------------------SKA 173 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH-----------------------HHH
Confidence 3455555544 78999999999997653322 1 2333334444566888 889
Q ss_pred HHHHHHHhhccccc------hHHHHH-HHHHHHHHhHHHHHHHHHhccccCCCCCchhHHH--HHHHHHhhhh
Q 012162 99 LKDAEKLLNLQSNS------MKSHLL-KANALILLERYDMARDAILSGLQVDPFSNPLQAS--LQNLERTTAS 162 (469)
Q Consensus 99 ~~~~~~al~l~p~~------~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~~~~~~ 162 (469)
+..|++...-.-++ .+.|+. .|.++.-..+.-.|..++++..+++|...+.++. ++.+-..+..
T Consensus 174 i~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE 246 (288)
T KOG1586|consen 174 IDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEE 246 (288)
T ss_pred HHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhh
Confidence 99888877644333 344444 4667777788888899999999999998876543 4444444433
No 344
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.12 E-value=0.61 Score=41.34 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=71.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
...+..+|+.+.+.||+++|++.|.++.+..... .+++.+.-.+.+..++| ..+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~-----------------------~~v 92 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW-----------------------SHV 92 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH-----------------------HHH
Confidence 4677889999999999999999999988765432 24556666667777888 666
Q ss_pred HHHHHHHhhccc--cchH----HHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 99 LKDAEKLLNLQS--NSMK----SHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 99 ~~~~~~al~l~p--~~~~----~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
.....++-.+-. .++. .....|..+...++|.+|-..|-.+..-.
T Consensus 93 ~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 93 EKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 666666655422 2222 23345777788999999999998876433
No 345
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.10 E-value=0.27 Score=50.79 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=77.8
Q ss_pred hccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccch-
Q 012162 35 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM- 113 (469)
Q Consensus 35 ~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~- 113 (469)
..+.+.|........+.-|+.+..++..|..+...|+. ++|+..+++++.......
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~-----------------------~~Ai~~~~~a~~~q~~~~Q 302 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNL-----------------------EEAIESFERAIESQSEWKQ 302 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCH-----------------------HHHHHHHHHhccchhhHHh
Confidence 45678899999999999999999999999999999999 999999999986554433
Q ss_pred ---HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 114 ---KSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 114 ---~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
-.++-+|+++..+++|++|..+|.+..+.+.-.+.
T Consensus 303 l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 303 LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 36788999999999999999999999986544333
No 346
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=0.7 Score=42.48 Aligned_cols=104 Identities=14% Similarity=-0.002 Sum_probs=70.7
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc------ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
.+..+...+..+...++|++|...+.+|.+-..++. .+|...|.....+..+
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl---------------------- 87 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL---------------------- 87 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 345555666667778999999999999996654443 3444455555566677
Q ss_pred HHHHHHHHHHHhhcc-----ccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 95 AELALKDAEKLLNLQ-----SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 95 ~~~A~~~~~~al~l~-----p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
.++...+++|..+- |+-+..-..+|-=....-+.++|+..|++++.+--++.
T Consensus 88 -sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d 144 (308)
T KOG1585|consen 88 -SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD 144 (308)
T ss_pred -HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Confidence 88888888887752 44433334444445567788999999999987755443
No 347
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.94 E-value=0.56 Score=47.02 Aligned_cols=109 Identities=14% Similarity=0.041 Sum_probs=88.7
Q ss_pred HHhccHHHHHHHHHHHhcCCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc
Q 012162 33 FRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 108 (469)
Q Consensus 33 ~~~~~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 108 (469)
....|.+.+...|+.+|++-|... .+|...|....+..+. ..|-+.+..||..
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l-----------------------~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNL-----------------------TGARKILGNAIGK 433 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHccc-----------------------HHHHHHHHHHhcc
Confidence 456889999999999999999754 4444445555566666 8999999999999
Q ss_pred cccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 109 QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 109 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
-|.+ +.+-..-..-.+++++|.....|++-|+.+|.|-.+......++..+++...
T Consensus 434 cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 434 CPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred CCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 9976 4444444455789999999999999999999999999999999999988765
No 348
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.42 Score=45.83 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=75.5
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcC-CCCCcc---cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNI-KPGDPI---VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~-~p~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
+++---..+|-.|+...-...+++.+-. +|+-|- ++--.|.++...|-| ++|.
T Consensus 139 a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y-----------------------~dAE 195 (491)
T KOG2610|consen 139 AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY-----------------------DDAE 195 (491)
T ss_pred hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc-----------------------hhHH
Confidence 3444456778889999999999998877 666542 233345666777888 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
+.+++++++++.+..+...++.++...|++.++.+...+.
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999999999999999999999887764
No 349
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=0.097 Score=51.06 Aligned_cols=45 Identities=33% Similarity=0.704 Sum_probs=33.4
Q ss_pred ccccccccccccccc---EEccCCCcccHHHHHHHccc---C-----CCccccccc
Q 012162 176 DDFDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMDR---G-----NKCPLCRAV 220 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p---~~~~cgh~~C~~Ci~~~~~~---~-----~~CP~Cr~~ 220 (469)
..+.|.||.+-..-. +-+||+|.||+.|+..+++. + -.||.|..+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 577999999755443 34799999999999988751 1 258877654
No 350
>PLN03077 Protein ECB2; Provisional
Probab=92.87 E-value=0.55 Score=52.68 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=72.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcC--CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
...|......+.+.|+.++|+..|++..+. .|+ ...|..+-.++.+.|.+ ++|.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v-----------------------~ea~ 609 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMV-----------------------TQGL 609 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChH-----------------------HHHH
Confidence 445666677788888888888888887764 454 34455555667777888 8888
Q ss_pred HHHHHHhh---ccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 100 KDAEKLLN---LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 100 ~~~~~al~---l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
..++...+ +.|+ ...|..+..+|.+.|++++|.+.+++. .+.|+...
T Consensus 610 ~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~ 659 (857)
T PLN03077 610 EYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAV 659 (857)
T ss_pred HHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHH
Confidence 88888774 3444 467888888888889999998888875 35565443
No 351
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.81 E-value=0.65 Score=49.99 Aligned_cols=101 Identities=17% Similarity=0.105 Sum_probs=81.3
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
.+...+|-.+++.|.+++|..+++..-...++|-..+..+-.+|..++++ ++|...|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~-----------------------d~~~~~Y 100 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL-----------------------DEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh-----------------------hHHHHHH
Confidence 34456788999999999999888777777777877888889999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
++++..+|+ .+..+.+-++|.+-+.|.+-.++--+..+.-|+++
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999 78888888999988888664333333333556655
No 352
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.13 Score=56.01 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=62.9
Q ss_pred CccccccccccccccccEEcc-CCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhchHHH
Q 012162 174 RTDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEY 246 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~~~-cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 246 (469)
..+.+.=|+..-.+.+||.+| .|++-||.=|..++-.+...|.||.+++. +...+|..++.-++.|..+.+
T Consensus 867 vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~--d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 867 VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTE--DMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred CchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCch--hhcCCCHHHHHHHHHHHHHhh
Confidence 667788899999999999998 99999999999999999999999999965 578899999999988875544
No 353
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.67 E-value=1.5 Score=43.43 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=73.1
Q ss_pred HHhHHHHHH---hccHHHHHHHHHH-HhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 26 VQKGNRAFR---ESNFEEAISNYSR-ANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 26 ~~~g~~~~~---~~~~~~A~~~y~~-al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...|.++-+ .|+.++|+..+.. .....+.+++.+.-.|.+|-.+ |.+.. -.+ ....++|+..
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~--~~~s~-~~d-----------~~~ldkAi~~ 248 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL--FLESN-FTD-----------RESLDKAIEW 248 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH--HHHcC-ccc-----------hHHHHHHHHH
Confidence 345666666 8999999999999 4555667888888888888554 21100 001 1112556666
Q ss_pred HHHHhhcccc---------------------------------------------chHHHHHHHHHHHHHhHHHHHHHHH
Q 012162 102 AEKLLNLQSN---------------------------------------------SMKSHLLKANALILLERYDMARDAI 136 (469)
Q Consensus 102 ~~~al~l~p~---------------------------------------------~~~~~~~~g~~~~~~~~~~~A~~~~ 136 (469)
|.++.+++|+ +.+.+-.++.+....|++++|++++
T Consensus 249 Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~ 328 (374)
T PF13281_consen 249 YRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAA 328 (374)
T ss_pred HHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6665555443 2334444555666688999999999
Q ss_pred hccccCCCCCchhHHHHHH
Q 012162 137 LSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 137 ~~al~~~p~~~~~~~~~~~ 155 (469)
++++++.|..=.....++.
T Consensus 329 e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 329 EKAFKLKPPAWELESTLEN 347 (374)
T ss_pred HHHhhcCCcchhHHHHHHH
Confidence 9999987765444433333
No 354
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=0.2 Score=46.93 Aligned_cols=57 Identities=23% Similarity=0.159 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 152 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (469)
+.|+...++.+.++|+++.-+.-.|.+|.++|.+.-|+.+++..++..|+++.+...
T Consensus 198 ~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 198 ELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999998876433
No 355
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.54 E-value=0.56 Score=45.47 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=77.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc-----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
.+++.+.+..+-+-.+|.+++.+-...+.+...++ ..+..+|.++..++.| +
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~f-----------------------q 139 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVF-----------------------Q 139 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHH-----------------------H
Confidence 45555566666666788888887777777654444 3455688899999999 9
Q ss_pred HHHHHHHHHhhccccchH------HHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 97 LALKDAEKLLNLQSNSMK------SHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~------~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
++++.|+.|+++..++.+ .+..+|..|..+.+|++|+-+..+|+++.
T Consensus 140 ~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 140 KALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred HHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 999999999998655433 67889999999999999999999988764
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.54 E-value=0.51 Score=35.28 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=43.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCccccc---chhHHHHHHHhh
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLG---NRSSAYIRISQF 72 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~---~~a~~~~~~~~~ 72 (469)
.+.....+|..+|++.+.++|+...++|++..++.+.-+. .+..+|...|+|
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gky 59 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKY 59 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999999999888775544 445678889999
No 357
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=0.14 Score=45.68 Aligned_cols=47 Identities=30% Similarity=0.648 Sum_probs=38.0
Q ss_pred ccccccccccccc--ccEEccCCCcccHHHHHHHcc--------cCCCccccccccc
Q 012162 176 DDFDCTLCLKLLY--EPITTPCGHSFCRSCLFQSMD--------RGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~--~p~~~~cgh~~C~~Ci~~~~~--------~~~~CP~Cr~~~~ 222 (469)
..-.|.+|.-.+. +.+.+.|-|.|.+.|+..|.. .++.||.|.++++
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 4457999987665 457789999999999998854 3578999999885
No 358
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.43 E-value=0.1 Score=33.47 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 113 MKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
..++.++|.+|...|++++|+..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999864
No 359
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.39 E-value=0.13 Score=42.14 Aligned_cols=49 Identities=22% Similarity=0.554 Sum_probs=39.4
Q ss_pred ccccccccccccccccEEc----cCCCcccHHHHHHHcccC---CCcccccccccc
Q 012162 175 TDDFDCTLCLKLLYEPITT----PCGHSFCRSCLFQSMDRG---NKCPLCRAVLFI 223 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~----~cgh~~C~~Ci~~~~~~~---~~CP~Cr~~~~~ 223 (469)
....+|.||.+...+..-+ =||.+.|..|-...|... ..||+|+..+..
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 3678999999998887544 399999999999877643 369999987743
No 360
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.71 E-value=0.15 Score=48.27 Aligned_cols=43 Identities=28% Similarity=0.783 Sum_probs=32.0
Q ss_pred cccccccccccc----EEccCCCcccHHHHHHHccc-CCCcccccccc
Q 012162 179 DCTLCLKLLYEP----ITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVL 221 (469)
Q Consensus 179 ~C~ic~~~~~~p----~~~~cgh~~C~~Ci~~~~~~-~~~CP~Cr~~~ 221 (469)
.|++|.+.+.-. ..-+||...|+.|-...-.. +.+||.||...
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 499999876543 23489999999997655433 45899999875
No 361
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.68 E-value=0.88 Score=37.87 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=52.9
Q ss_pred ccHHHHHHHHHHHhc-CCCC-CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccch
Q 012162 36 SNFEEAISNYSRANN-IKPG-DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 113 (469)
Q Consensus 36 ~~~~~A~~~y~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~ 113 (469)
.|-.+.|..++..++ -.|. .-+..+.+|..++++++| +.|+.+.+..++.+|+|.
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY-----------------------~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEY-----------------------SKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhH-----------------------HHHHHHHHHHHhhCCCcH
Confidence 456778999999996 5554 347788899999999999 999999999999999998
Q ss_pred HHHHHHHHH
Q 012162 114 KSHLLKANA 122 (469)
Q Consensus 114 ~~~~~~g~~ 122 (469)
.+.-..-.+
T Consensus 106 Qa~~Lk~~i 114 (149)
T KOG3364|consen 106 QALELKETI 114 (149)
T ss_pred HHHHHHHHH
Confidence 876554444
No 362
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.46 E-value=1 Score=44.67 Aligned_cols=99 Identities=13% Similarity=-0.009 Sum_probs=74.2
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHhcC----CCCCcccccchhHHHHH---HHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 25 LVQKGNRAFRESNFEEAISNYSRANNI----KPGDPIVLGNRSSAYIR---ISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 25 ~~~~g~~~~~~~~~~~A~~~y~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
..+.--.|..-.+|+.-+...+..-.+ -++.+.+-+..|.++.+ .|+. ++
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr-----------------------e~ 200 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR-----------------------EK 200 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH-----------------------HH
Confidence 334444566778888888887776555 33455566677777777 6666 99
Q ss_pred HHHHHHH-HhhccccchHHHHHHHHHHHH---------HhHHHHHHHHHhccccCCCCC
Q 012162 98 ALKDAEK-LLNLQSNSMKSHLLKANALIL---------LERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 98 A~~~~~~-al~l~p~~~~~~~~~g~~~~~---------~~~~~~A~~~~~~al~~~p~~ 146 (469)
|+..+.. .....+.+++.+-..|.+|-. ....++|+++|.++++++|+.
T Consensus 201 Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 201 ALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 9999988 666778889999999999853 335789999999999999753
No 363
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.45 E-value=0.24 Score=46.97 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=71.9
Q ss_pred HHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHH-HHHH
Q 012162 44 NYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLL-KANA 122 (469)
Q Consensus 44 ~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~-~g~~ 122 (469)
.|.++-.--|+|+.+|...+.--.+.+.| .+.-..+.++++.+|.+.+.|.. -+.-
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y-----------------------~~~~nI~~~~l~khP~nvdlWI~~c~~e 151 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMY-----------------------GEMKNIFAECLTKHPLNVDLWIYCCAFE 151 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhcCCCCceeeeeeccch
Confidence 34455555677888877766655666777 78888999999999999998877 5566
Q ss_pred HHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 123 LILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
|...++++.|...|.++|+++|+++.++...-++
T Consensus 152 ~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 152 LFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred hhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 7889999999999999999999999877554443
No 364
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.41 E-value=2.4 Score=42.50 Aligned_cols=137 Identities=14% Similarity=0.076 Sum_probs=77.5
Q ss_pred HHHHHHhHHHHHHhcc-HHHHHHHHHHHhcCCCCCcccc---------------cchhHH-HHHHHhhhccCCCCCcccC
Q 012162 22 VFDLVQKGNRAFRESN-FEEAISNYSRANNIKPGDPIVL---------------GNRSSA-YIRISQFLKHRPPSASEYR 84 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~-~~~A~~~y~~al~~~p~~~~~~---------------~~~a~~-~~~~~~~~~~~~~~~~~~~ 84 (469)
+..+..-|..+.+.|. -++|+..+..+++..|.|...- ...+.. +++++++++...-++-...
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 4445555666777777 6778888888888888764211 111110 1223333222111111100
Q ss_pred c--c-CCCCC------chhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC----CchhHH
Q 012162 85 P--L-NGLDP------TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF----SNPLQA 151 (469)
Q Consensus 85 ~--~-~~~~~------~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~ 151 (469)
- + ...+. +....++.-+..-..+++| ++.+|..+|.+++...+|++|..++... -|+ |..+++
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqK 534 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQK 534 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHH
Confidence 0 0 00000 0111556666667788999 8999999999999999999999998764 342 223445
Q ss_pred HHHHHHHhhhh
Q 012162 152 SLQNLERTTAS 162 (469)
Q Consensus 152 ~~~~~~~~~~~ 162 (469)
.+.-+++.+.+
T Consensus 535 Al~lCqKh~~k 545 (549)
T PF07079_consen 535 ALALCQKHLPK 545 (549)
T ss_pred HHHHHHHhhhh
Confidence 55555555443
No 365
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.38 E-value=1.2 Score=43.88 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=78.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC---------------------------CcccccchhHHHHHHHhhhc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPG---------------------------DPIVLGNRSSAYIRISQFLK 74 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~---------------------------~~~~~~~~a~~~~~~~~~~~ 74 (469)
.......+..+...|+..+|+......++.... ...-....|.++..+++|..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 344566778888889999999988888872111 11122446778888888833
Q ss_pred cCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHH-----------------HHHHHHHh
Q 012162 75 HRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERY-----------------DMARDAIL 137 (469)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~-----------------~~A~~~~~ 137 (469)
... .. ......++++..+.++++++|++.++|+..|..+..+-+. ..|+..|-
T Consensus 264 ~~~-~~---------~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~ 333 (352)
T PF02259_consen 264 ELY-SK---------LSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYL 333 (352)
T ss_pred hhc-cc---------cccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHH
Confidence 220 00 1123348899999999999999999999999987654222 33778888
Q ss_pred ccccCCCC
Q 012162 138 SGLQVDPF 145 (469)
Q Consensus 138 ~al~~~p~ 145 (469)
+++.+.+.
T Consensus 334 ~al~~~~~ 341 (352)
T PF02259_consen 334 KALSLGSK 341 (352)
T ss_pred HHHhhCCC
Confidence 88887776
No 366
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.35 E-value=0.33 Score=38.98 Aligned_cols=32 Identities=34% Similarity=0.703 Sum_probs=25.6
Q ss_pred CccccccccccccccccE--EccCCCcccHHHHH
Q 012162 174 RTDDFDCTLCLKLLYEPI--TTPCGHSFCRSCLF 205 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~--~~~cgh~~C~~Ci~ 205 (469)
..+.-.|++|...+.+.+ .+||||.|+..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 345567999999888763 47999999999974
No 367
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.33 E-value=0.07 Score=47.96 Aligned_cols=46 Identities=35% Similarity=0.870 Sum_probs=36.4
Q ss_pred cccccccccc-cccccE----Ecc-CCCcccHHHHHHHcccCC-Ccc--cccccc
Q 012162 176 DDFDCTLCLK-LLYEPI----TTP-CGHSFCRSCLFQSMDRGN-KCP--LCRAVL 221 (469)
Q Consensus 176 ~~~~C~ic~~-~~~~p~----~~~-cgh~~C~~Ci~~~~~~~~-~CP--~Cr~~~ 221 (469)
.+..||+|.. .+-+|- +.| |-|..|.+|..+.+..+. .|| .|.+.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 4558999984 566772 235 999999999999998876 699 788766
No 368
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=1.4 Score=40.92 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=69.4
Q ss_pred ccCCCCCC----hhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCccc
Q 012162 8 NEGEGSLP----WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEY 83 (469)
Q Consensus 8 ~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (469)
..++.++. ++.+.++..|... ..++...-..|+..-..+|.++|.+..+|..|-.++-.++...
T Consensus 27 dDg~npvv~I~Yte~fr~~m~YfRA--I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL---------- 94 (318)
T KOG0530|consen 27 DDGPNPVVKIAYTEDFRDVMDYFRA--IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDL---------- 94 (318)
T ss_pred CCCCCcceEeeechhHHHHHHHHHH--HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHH----------
Confidence 44444444 3566666666531 3344456678999999999999999999988888877665431
Q ss_pred CccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHH-HHHHHHhccccCCC
Q 012162 84 RPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYD-MARDAILSGLQVDP 144 (469)
Q Consensus 84 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~-~A~~~~~~al~~~p 144 (469)
.+-+..+++.++-+|+|...|..+-.+...+|++. .-+...+.++..+.
T Consensus 95 ------------~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~Da 144 (318)
T KOG0530|consen 95 ------------NKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDA 144 (318)
T ss_pred ------------HHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccc
Confidence 44455555555555555555555555555555544 44444445554443
No 369
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.94 E-value=0.75 Score=51.90 Aligned_cols=105 Identities=12% Similarity=-0.073 Sum_probs=55.1
Q ss_pred HHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccc
Q 012162 31 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 110 (469)
Q Consensus 31 ~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 110 (469)
.|-+-+.|++|.++|++.++---.....|...|..+++.++- ++|...+.+|++--|
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~-----------------------~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA-----------------------EAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH-----------------------HHHHHHHHHHHhhcc
Confidence 333445555555555555554444445555555555554444 455555555555555
Q ss_pred c--chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 111 N--SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 111 ~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
. +.+..-..|+.-++.|+-+.++..|+-.+.-.|.-.+++......+.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 5 44444445555555555555555555555555555555554444443
No 370
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.93 E-value=0.17 Score=32.22 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 114 KSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
+.|..+|.+-...++|++|+.+|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999875
No 371
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.91 E-value=0.34 Score=30.92 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=26.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
+..+...|..+...|+|++|..++++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 456788999999999999999999999876
No 372
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.51 E-value=0.31 Score=30.61 Aligned_cols=34 Identities=15% Similarity=-0.013 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHH--HhccccCCCCC
Q 012162 113 MKSHLLKANALILLERYDMARDA--ILSGLQVDPFS 146 (469)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p~~ 146 (469)
++.++.+|..+...|+|++|++. |.-+..+++.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35678899999999999999999 44777777654
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.43 E-value=0.35 Score=27.77 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhc
Q 012162 113 MKSHLLKANALILLERYDMARDAILS 138 (469)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~A~~~~~~ 138 (469)
+.+++.+|.++...|++++|...+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 35788999999999999999998764
No 374
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=90.22 E-value=0.15 Score=33.60 Aligned_cols=42 Identities=29% Similarity=0.774 Sum_probs=24.9
Q ss_pred ccccccccccccEEccC-CCcccHHHHHHHcccCCCccccccccc
Q 012162 179 DCTLCLKLLYEPITTPC-GHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 179 ~C~ic~~~~~~p~~~~c-gh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.|.-|. |.+--.+.| .|-.|..|+.-.+..+..||.|..++.
T Consensus 4 nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCW--FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ---SS---S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred cChhhh--hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 355554 223323345 489999999999999999999999874
No 375
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.19 E-value=2.3 Score=41.83 Aligned_cols=121 Identities=20% Similarity=0.121 Sum_probs=89.1
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC----CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG----DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
..+..+...+..+.+.|.++.|...+.++...++. .+.+....|..+...|+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~----------------------- 200 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQ----------------------- 200 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCH-----------------------
Confidence 44677888899999999999999999999987633 355556566666666766
Q ss_pred HHHHHHHHHHhhc--c--------------------------------ccchHHHHHHHHHHHHH------hHHHHHHHH
Q 012162 96 ELALKDAEKLLNL--Q--------------------------------SNSMKSHLLKANALILL------ERYDMARDA 135 (469)
Q Consensus 96 ~~A~~~~~~al~l--~--------------------------------p~~~~~~~~~g~~~~~~------~~~~~A~~~ 135 (469)
.+|+..++..+.. . ....++++.+|.-...+ +.+++++..
T Consensus 201 ~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~ 280 (352)
T PF02259_consen 201 EEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKY 280 (352)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 7777776666651 0 11245667777766666 888899999
Q ss_pred HhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 136 ILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 136 ~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
|.++++++|++..+..........+-..
T Consensus 281 ~~~a~~~~~~~~k~~~~~a~~~~~~~~~ 308 (352)
T PF02259_consen 281 YKEATKLDPSWEKAWHSWALFNDKLLES 308 (352)
T ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence 9999999999888777776666555443
No 376
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=1.4 Score=45.49 Aligned_cols=106 Identities=13% Similarity=-0.062 Sum_probs=84.8
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc
Q 012162 29 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 108 (469)
Q Consensus 29 g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 108 (469)
.-.+...++...|+.....++..+|++..++.++|.+....+... ..+....+.+...
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~----------------------~~~~~~~~~a~~~ 131 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQF----------------------LALADISEIAEWL 131 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHH----------------------HHHHHHHHHHHhc
Confidence 444556678888999999999999999999999999988877661 4444555669999
Q ss_pred cccchHHHHHH------HHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 109 QSNSMKSHLLK------ANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 109 ~p~~~~~~~~~------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
.|++..+...+ |..+..+|+..++..+..++..+.|.++.+...+...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 132 SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 99998877777 8888889999999999999999999987655444333
No 377
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.90 E-value=2.5 Score=35.93 Aligned_cols=86 Identities=14% Similarity=0.012 Sum_probs=75.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+.+........+++.++.......--+.|+.+.+-..-|..++..|+| .+|+..
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w-----------------------~eA~rv 66 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNY-----------------------DEAARI 66 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCH-----------------------HHHHHH
Confidence 445566666677789999999999998889999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYD 130 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~ 130 (469)
++...+-.+..+.+--.++.+++.+|+.+
T Consensus 67 lr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 67 LRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 99999999998888888999999888863
No 378
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=89.52 E-value=1.7 Score=40.03 Aligned_cols=122 Identities=12% Similarity=0.123 Sum_probs=65.6
Q ss_pred HHHhccHHHHHHHHHHHhcCCCCCccccc-chhHHHH-HHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcc
Q 012162 32 AFRESNFEEAISNYSRANNIKPGDPIVLG-NRSSAYI-RISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 109 (469)
Q Consensus 32 ~~~~~~~~~A~~~y~~al~~~p~~~~~~~-~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 109 (469)
+|..|+|+.|++...-||+.+=.-|.-|. +.+.... ..-++......+... .++.. -........-.++
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~------~e~~~--~~~~~~l~~~~dm- 163 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGES------VEPYF--LRVFLDLTTEWDM- 163 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCC------CChHH--HHHHHHHHhcCCC-
Confidence 45779999999999999998655554333 1111111 001110000000000 11110 1111111111112
Q ss_pred ccchHH--HHHHHHHH---------HHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 110 SNSMKS--HLLKANAL---------ILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 110 p~~~~~--~~~~g~~~---------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
|+...+ |-..|..+ ...++...|+.++++|+++|| +...+..++++++.++..
T Consensus 164 pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~-k~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 164 PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND-KCGVKKDIERLERRLKAL 227 (230)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHhhc
Confidence 444444 44456655 245678899999999999996 466777788888887643
No 379
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.49 E-value=1.5 Score=48.77 Aligned_cols=111 Identities=16% Similarity=0.082 Sum_probs=82.0
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCccc---ccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHH
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIV---LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 104 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 104 (469)
-.++.+..+.|++|+..|++.-.--|+.... .+..|.+.+..-+- ..|+ ....+|+..|++
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~~ 544 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASE---------------QGDP-RDFTQALSEFSY 544 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHh---------------cCCh-HHHHHHHHHHHH
Confidence 3466777889999999999999999987654 45556555443322 0111 122778887776
Q ss_pred HhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 105 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 105 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
.-. .|.-|--|..+|.+|..+|+|++-++.|.-|++.-|+++.+......
T Consensus 545 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (932)
T PRK13184 545 LHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDH 594 (932)
T ss_pred hcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 533 46667889999999999999999999999999999999987544433
No 380
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=89.12 E-value=0.18 Score=52.98 Aligned_cols=46 Identities=28% Similarity=0.763 Sum_probs=39.4
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHccc---CCCcccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR---GNKCPLCRAVL 221 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~---~~~CP~Cr~~~ 221 (469)
..++|+||...+..|+.+.|-|.||..|+...+.. ...||+|+..+
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 56799999999999999999999999999876653 34699999665
No 381
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.67 E-value=0.24 Score=55.25 Aligned_cols=47 Identities=28% Similarity=0.745 Sum_probs=41.3
Q ss_pred Ccccccccccccccc-ccEEccCCCcccHHHHHHHcccCCCccccccc
Q 012162 174 RTDDFDCTLCLKLLY-EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAV 220 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~-~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~ 220 (469)
....+.|++|++++. .-.+..|||.+|..|+..|+..+..||.|...
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 345669999999999 55788999999999999999999999999854
No 382
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.43 E-value=0.41 Score=48.09 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=69.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhc---------CCCC---------CcccccchhHHHHHHHhhhccCCCCCccc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANN---------IKPG---------DPIVLGNRSSAYIRISQFLKHRPPSASEY 83 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~---------~~p~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (469)
.-.+.+.|-..|+.|.|..++.+|.+|++ +.|. .-.++||.|..|+..|+.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP----------- 351 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP----------- 351 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc-----------
Confidence 34456788999999999999999999996 1221 237889999999999999
Q ss_pred CccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 012162 84 RPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALIL 125 (469)
Q Consensus 84 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 125 (469)
-.|.+.|.+++..--.+|..|.++|.+...
T Consensus 352 ------------l~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 352 ------------LLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ------------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999999999999998754
No 383
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.10 E-value=1.3 Score=41.96 Aligned_cols=91 Identities=19% Similarity=0.122 Sum_probs=68.6
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCC----------------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCc
Q 012162 29 GNRAFRESNFEEAISNYSRANNIKPGD----------------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 29 g~~~~~~~~~~~A~~~y~~al~~~p~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
|......+.+.++..++.......++. ..++..++..+...+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~-------------------- 169 (280)
T COG3629 110 GLKARAGLRFEQAGELLSEGPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRA-------------------- 169 (280)
T ss_pred ccchhhhHHHHHHHHHhhcCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--------------------
Confidence 444555567777777777522222211 14445556666666777
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 93 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
+.+...+++.+.++|.+-.+|..+-.+|...|+...|+..|++.-.+
T Consensus 170 ---~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 170 ---DAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred ---HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999987663
No 384
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=5.6 Score=43.16 Aligned_cols=191 Identities=18% Similarity=0.202 Sum_probs=97.3
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHH-hhhccCCCCCcccCccCCCCCchh
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
......-.++|..+...|.|.+|++.|..+|-.-|-. ...-...+......+ .|+-.- +-..+.+. -+...
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL-~~E~~Rr~----l~~~~ 1062 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGL-SVELERRK----LKKPN 1062 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhh-eeeeeecc----cCCch
Confidence 4445666788999999999999999999998654421 000000111111111 120000 00000000 01111
Q ss_pred HHHH--HHHHHHHhhccccchHHHHHHH-HHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhcccCCCC
Q 012162 95 AELA--LKDAEKLLNLQSNSMKSHLLKA-NALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGT 171 (469)
Q Consensus 95 ~~~A--~~~~~~al~l~p~~~~~~~~~g-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (469)
...+ +..|=.-..+.|-+.-.-.+.| .+++++++|..|-..-.+.+++.|..+.+...-+.....-++....-.
T Consensus 1063 ~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~--- 1139 (1202)
T KOG0292|consen 1063 LEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYE--- 1139 (1202)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCcccccc---
Confidence 2333 3333444567777655444444 477899999999999999999999877664332222221111111111
Q ss_pred CCCccccccccccccccccEE---ccCCCcccHHHHHHHcccCCCcccccc
Q 012162 172 PERTDDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLCRA 219 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~---~~cgh~~C~~Ci~~~~~~~~~CP~Cr~ 219 (469)
.+-++...-.||...+. |+. -.|...||..|..... .++.|-+|.-
T Consensus 1140 l~yd~~n~f~iC~~t~~-Piy~g~p~~~cp~cga~y~~~~-~g~iCtvc~V 1188 (1202)
T KOG0292|consen 1140 LNYDPHNPFVICGATYV-PIYRGRPDVSCPYCGACFVPSS-KGNICTVCDV 1188 (1202)
T ss_pred cCcccCCCeeEecccce-eeecCCCCcCCCcccceecccc-CCceeeeeee
Confidence 11111112235544332 332 2355667777765544 3457888864
No 385
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=87.64 E-value=0.41 Score=39.63 Aligned_cols=45 Identities=20% Similarity=0.496 Sum_probs=33.8
Q ss_pred ccccccccccccc--c-EEccCC------CcccHHHHHHHcccCCCcccccccc
Q 012162 177 DFDCTLCLKLLYE--P-ITTPCG------HSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 177 ~~~C~ic~~~~~~--p-~~~~cg------h~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
..+|.||++.+.+ - |.++|| |.||..|+.+|-......|-=|...
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~I~ 79 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRNIK 79 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccceE
Confidence 5689999998877 4 446777 6699999999965556677655443
No 386
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=0.23 Score=46.57 Aligned_cols=41 Identities=32% Similarity=0.644 Sum_probs=29.0
Q ss_pred cccccccc-ccccEEccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 179 DCTLCLKL-LYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 179 ~C~ic~~~-~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
.|.-|... ..--..+||.|.||.+|.. .+..+.||.|..++
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr--~~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECAR--SDSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhh--cCccccCcCcccHH
Confidence 57777542 2223458999999999974 33356899998776
No 387
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.53 E-value=2 Score=42.28 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=70.9
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc-ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHH
Q 012162 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 103 (469)
Q Consensus 25 ~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 103 (469)
....+....-.|+|+.|.+.|+-.+. +|..- -.+..+-..-.++|.+ +.|..+++
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Gar-----------------------eaAr~yAe 178 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAR-----------------------EAARHYAE 178 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccH-----------------------HHHHHHHH
Confidence 34567788889999999999988775 44321 1111111223356777 89999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 104 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 104 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
++-.+.|.-+.+....-......|+++.|++..+...+
T Consensus 179 ~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 179 RAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999988899999999999998887654
No 388
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.45 E-value=1.8 Score=46.42 Aligned_cols=97 Identities=11% Similarity=-0.022 Sum_probs=65.4
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHH----------hcCCCC----------CcccccchhHHHHHHHhhhccCCCCCcc
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRA----------NNIKPG----------DPIVLGNRSSAYIRISQFLKHRPPSASE 82 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~a----------l~~~p~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (469)
..|++.|..+-..+|.+.|+++|+++ |.-+|. ++.+|.+-|.-.-..|+.
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem---------- 928 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM---------- 928 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccch----------
Confidence 45677777888889999999999876 233443 233333333333333333
Q ss_pred cCccCCCCCchhHHHHHHHHHHHhh---------------------ccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 83 YRPLNGLDPTTHAELALKDAEKLLN---------------------LQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 83 ~~~~~~~~~~~~~~~A~~~~~~al~---------------------l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
+.|+..|..|-+ -...+-.|.|.+|.-|...|++.+|+..|.+|-.
T Consensus 929 -------------daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 929 -------------DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred -------------HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 666666655432 2356677899999999999999999999888754
Q ss_pred C
Q 012162 142 V 142 (469)
Q Consensus 142 ~ 142 (469)
+
T Consensus 996 f 996 (1416)
T KOG3617|consen 996 F 996 (1416)
T ss_pred H
Confidence 3
No 389
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.27 E-value=7.3 Score=36.06 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=66.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
+.....++-.....-++++|+.+|++++.+--.+ ...+...+..+.++++|
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf----------------------- 166 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF----------------------- 166 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh-----------------------
Confidence 3444556666677778888999999887763322 24555666778888888
Q ss_pred HHHHHHHHH----Hhhcc--ccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 96 ELALKDAEK----LLNLQ--SNSMKSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 96 ~~A~~~~~~----al~l~--p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
.+|-..+.+ +++.+ ++..+++...-.+|....+|..|...|+..-++..
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 666555443 33333 34445565555666777899999999999777643
No 390
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.79 E-value=7.7 Score=28.89 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=19.5
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhc
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANN 50 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~ 50 (469)
.+..+..+|..+=+.|+|.+|+.+|++|++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 355666667777777777777776655544
No 391
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.68 E-value=0.39 Score=46.04 Aligned_cols=60 Identities=30% Similarity=0.557 Sum_probs=43.1
Q ss_pred CCccccccccccccccccEE-ccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHH
Q 012162 173 ERTDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQK 240 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 240 (469)
...+.++||+|.+.+.-|+- =+=||.-|..|-. .....||.||.++.. .-++++..+++.
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~-----~R~~amEkV~e~ 104 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN-----IRCRAMEKVAEA 104 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhh---hhcccCCcccccccc-----HHHHHHHHHHHh
Confidence 35577899999999998853 4668999999965 334689999998741 134455555554
No 392
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.56 E-value=0.88 Score=28.97 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=26.3
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCC
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIK 52 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 52 (469)
+.+...|...+..++|++|+..|.+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999863
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.13 E-value=1 Score=35.23 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhccc---------cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 96 ELALKDAEKLLNLQS---------NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 96 ~~A~~~~~~al~l~p---------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
..|++.+.+..+... ....+...+|.++...|++++|+..+++|+++.....
T Consensus 15 ~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 15 SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 888887777766432 1245778899999999999999999999998865443
No 394
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.12 E-value=0.53 Score=46.00 Aligned_cols=47 Identities=26% Similarity=0.537 Sum_probs=36.7
Q ss_pred ccccccccccccccc---cEEccCCCcccHHHHHHHcccC---CCcccccccc
Q 012162 175 TDDFDCTLCLKLLYE---PITTPCGHSFCRSCLFQSMDRG---NKCPLCRAVL 221 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~---p~~~~cgh~~C~~Ci~~~~~~~---~~CP~Cr~~~ 221 (469)
...|.|||-.+.-.+ |+.+.|||..|+.-+.+...++ +.||-|-...
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 456789988875443 6889999999999999887654 4799997553
No 395
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.81 E-value=3.9 Score=39.42 Aligned_cols=97 Identities=22% Similarity=0.169 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc--cccchH
Q 012162 37 NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL--QSNSMK 114 (469)
Q Consensus 37 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--~p~~~~ 114 (469)
||..-..+|+-...+.| +|.+-.|+|.+.....-. ..++...+....- -..+..
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp-----------------------~agLa~ve~L~~~~~L~gy~~ 366 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGP-----------------------AAGLAMVEALLARPRLDGYHL 366 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhH-----------------------HhHHHHHHHhhcccccccccc
Confidence 34444455555555555 466677788777655444 5555555544443 233445
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 115 SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 115 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
.+-..|..+..+|+.++|...|++|+.+.++..+......++.
T Consensus 367 ~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 367 YHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred cHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 6677899999999999999999999999998877655554443
No 396
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.37 E-value=1.4 Score=37.26 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=43.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhh
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 72 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 72 (469)
++.+..++..++..|+|.-|..+.+.++..+|++..+...++.+|.+++.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 567788999999999999999999999999999999999999999888864
No 397
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.23 E-value=4.2 Score=44.07 Aligned_cols=35 Identities=37% Similarity=0.859 Sum_probs=27.5
Q ss_pred Cccccccccccc-cccccE-EccCCCcccHHHHHHHc
Q 012162 174 RTDDFDCTLCLK-LLYEPI-TTPCGHSFCRSCLFQSM 208 (469)
Q Consensus 174 ~~~~~~C~ic~~-~~~~p~-~~~cgh~~C~~Ci~~~~ 208 (469)
.+..-.|.+|.. ++..|. .+||||.|.++|+.+..
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 445568999997 556674 57999999999998753
No 398
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=84.14 E-value=4.3 Score=42.08 Aligned_cols=97 Identities=18% Similarity=0.059 Sum_probs=73.1
Q ss_pred HhccHHH-HHHHHHHHhcCCCCCcccccc--hhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccc
Q 012162 34 RESNFEE-AISNYSRANNIKPGDPIVLGN--RSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 110 (469)
Q Consensus 34 ~~~~~~~-A~~~y~~al~~~p~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 110 (469)
..++... |+..|...+.++|.++.++.. ++..+..++.. ..+......++..+|
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~-----------------------~~~~~~~~~~l~~~~ 98 (620)
T COG3914 42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADS-----------------------TLAFLAKRIPLSVNP 98 (620)
T ss_pred cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccc-----------------------hhHHHHHhhhHhcCc
Confidence 3344444 788888888899998876432 24444444444 678888999999999
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHhc-cccCCCCCchhHHHH
Q 012162 111 NSMKSHLLKANALILLERYDMARDAILS-GLQVDPFSNPLQASL 153 (469)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~ 153 (469)
+++.++.++|.++...|....+...+.+ +....|+|......+
T Consensus 99 ~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 99 ENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 9999999999999888887777766666 889999988765554
No 399
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.00 E-value=2 Score=40.81 Aligned_cols=62 Identities=16% Similarity=-0.084 Sum_probs=49.0
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
|..+|.+|+.+.|++...|+.+|.++...|+.=+|+-+|-+++...--.+.+..++..+=++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999987654456666666555444
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=83.49 E-value=2.1 Score=33.48 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=45.7
Q ss_pred HHHHHhccHHHHHHHHHHHhcCCCCC---------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 30 NRAFRESNFEEAISNYSRANNIKPGD---------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 30 ~~~~~~~~~~~A~~~y~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+.|||.+|++.+.+.++..... ..+..++|..+...|++ ++|+.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~-----------------------~~A~~ 62 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY-----------------------EEALQ 62 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 34567899999988888887663322 34567788889999999 99999
Q ss_pred HHHHHhhccc
Q 012162 101 DAEKLLNLQS 110 (469)
Q Consensus 101 ~~~~al~l~p 110 (469)
.+++|+++.-
T Consensus 63 ~l~eAi~~Ar 72 (94)
T PF12862_consen 63 ALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 401
>PHA03096 p28-like protein; Provisional
Probab=83.44 E-value=0.55 Score=44.72 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=29.5
Q ss_pred cccccccccccc-c-------EEccCCCcccHHHHHHHcccC---CCcccccc
Q 012162 178 FDCTLCLKLLYE-P-------ITTPCGHSFCRSCLFQSMDRG---NKCPLCRA 219 (469)
Q Consensus 178 ~~C~ic~~~~~~-p-------~~~~cgh~~C~~Ci~~~~~~~---~~CP~Cr~ 219 (469)
-.|.||++.... + +...|.|.||..|+..|.... ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 579999985443 2 234799999999999986532 24666654
No 402
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=83.29 E-value=1.1 Score=43.37 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=69.2
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHH
Q 012162 26 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 105 (469)
Q Consensus 26 ~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 105 (469)
.+.+...++.+++..|+..-..+++.++....+|+.++.+++.+.++ ++|+++...+
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~-----------------------~~a~~~~~~a 335 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNY-----------------------DEALEDLKKA 335 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhch-----------------------hhhHHHHHHh
Confidence 34566777889999999998999999999999999999999999999 9999999999
Q ss_pred hhccccchHHHHHHHHHHHHHhHHH
Q 012162 106 LNLQSNSMKSHLLKANALILLERYD 130 (469)
Q Consensus 106 l~l~p~~~~~~~~~g~~~~~~~~~~ 130 (469)
....|++....-.+..+-....++.
T Consensus 336 ~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 336 KQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred hccCcchHHHHHHHHHhhhHHHHHH
Confidence 9999999877666666555544443
No 403
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=83.12 E-value=0.67 Score=31.56 Aligned_cols=42 Identities=24% Similarity=0.586 Sum_probs=21.2
Q ss_pred cccccccccccccEE-ccCCCcccHHHHHHHcc-----cCCCccccccc
Q 012162 178 FDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMD-----RGNKCPLCRAV 220 (469)
Q Consensus 178 ~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~-----~~~~CP~Cr~~ 220 (469)
+.|++....+..|+. ..|.|.-|-+= ..++. ..-.||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 679999999999987 69999866432 22222 22379999863
No 404
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.11 E-value=3.9 Score=40.97 Aligned_cols=34 Identities=29% Similarity=0.757 Sum_probs=25.2
Q ss_pred ccccccccccccccc----EEccCCCcccHHHHHHHcc
Q 012162 176 DDFDCTLCLKLLYEP----ITTPCGHSFCRSCLFQSMD 209 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p----~~~~cgh~~C~~Ci~~~~~ 209 (469)
...+|.+|..-...+ .+..|+|.||..|..++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 456899999333222 2457999999999998876
No 405
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.09 E-value=4.4 Score=34.98 Aligned_cols=62 Identities=16% Similarity=-0.058 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
+.+...+...--+.|+.+..-..-|+.+...|++.+|+..|+...+-.|..+..+..+.-+-
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 67777777777799999999999999999999999999999999888888877665554443
No 406
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.01 E-value=1.9 Score=40.85 Aligned_cols=62 Identities=10% Similarity=-0.117 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHH
Q 012162 41 AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKA 120 (469)
Q Consensus 41 A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 120 (469)
|..+|.+|+.+.|++...|+.+|..+...|+. -.|+-+|-+++-..--.+.|..++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~-----------------------l~avy~y~Rsl~~~~Pf~~A~~NL~ 57 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD-----------------------LDAVYYYIRSLAVRIPFPSARENLQ 57 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHSSSB--HHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccch-----------------------HHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 78899999999999999999999999999998 8899999999887666688888888
Q ss_pred HHHHH
Q 012162 121 NALIL 125 (469)
Q Consensus 121 ~~~~~ 125 (469)
..+..
T Consensus 58 ~lf~~ 62 (278)
T PF10373_consen 58 KLFEK 62 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87776
No 407
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.95 E-value=2.8 Score=26.31 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=25.0
Q ss_pred HHHHHhHHHHHHhccHHHHHHH--HHHHhcCCCCC
Q 012162 23 FDLVQKGNRAFRESNFEEAISN--YSRANNIKPGD 55 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~--y~~al~~~p~~ 55 (469)
+.+...|-.++.+|+|++|+.. |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3456778999999999999999 54877777654
No 408
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=82.84 E-value=3.6 Score=39.28 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=61.0
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccc-hhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGN-RSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
.+..-|..-+.-..+.|-|.+--..|.+++...|.|.++|.. -+.-|...+++ ..+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani-----------------------~s~ 161 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI-----------------------ESS 161 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccH-----------------------HHH
Confidence 344555556666667788889999999999999999999976 44556677888 899
Q ss_pred HHHHHHHhhccccchHHHHH
Q 012162 99 LKDAEKLLNLQSNSMKSHLL 118 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~ 118 (469)
...+.++++++|++|..|+.
T Consensus 162 Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 162 RAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHhhhccCCCCchHHHH
Confidence 99999999999999887653
No 409
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=82.77 E-value=6 Score=39.80 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=59.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
.......|.-+|..|+|.++..+-.-..+++| .+.+|..+|.|.+...+| .+|...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y-----------------------~eA~~~ 517 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRY-----------------------QEAWEY 517 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhH-----------------------HHHHHH
Confidence 34445678889999999999999999999999 899999999999999999 999887
Q ss_pred HHHHhhccccchHHHHHHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALI 124 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~ 124 (469)
+...-- +.+-.++....|.++.
T Consensus 518 l~~LP~-n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 518 LQKLPP-NERMRDSKVQKALALC 539 (549)
T ss_pred HHhCCC-chhhHHHHHHHHHHHH
Confidence 765422 2222344444555443
No 410
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.60 E-value=8.9 Score=38.86 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=65.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+......-......||...|-.-...+++..|.+|..-..++.++..+|+| +.|..
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~y-----------------------e~~~~ 344 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYY-----------------------EQAYQ 344 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhH-----------------------HHHHH
Confidence 3444445556677889999999999999999999999999999999999999 66665
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
+..-+-..-..-.++..-+-..+..+|++++|...-.-.|.
T Consensus 345 ~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 345 DISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 55444333333333444444445555555555554444443
No 411
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.52 E-value=5.5 Score=29.86 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHH---HHHHHHhHHHHHHHHHhccc
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKA---NALILLERYDMARDAILSGL 140 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g---~~~~~~~~~~~A~~~~~~al 140 (469)
++|+..+.++++..++.+..+..+| .+|...|+|.+++++..+=+
T Consensus 23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888777666655 46789999999887755433
No 412
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.23 E-value=16 Score=34.90 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=80.1
Q ss_pred hhhhhHHHHHHhHHHHHHhc-cHHHHHHHHHHHhcC----CC---CCc-------ccccchhHHHHHHHhhhccCCCCCc
Q 012162 17 DRYTHVFDLVQKGNRAFRES-NFEEAISNYSRANNI----KP---GDP-------IVLGNRSSAYIRISQFLKHRPPSAS 81 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~-~~~~A~~~y~~al~~----~p---~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (469)
....-+..+++-|...+.++ +|+.|+..+++|+++ .. ..+ .++..++.+|+..+.+
T Consensus 30 ~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~--------- 100 (278)
T PF08631_consen 30 MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTY--------- 100 (278)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCCh---------
Confidence 34455788889999999999 999999999999988 22 222 2333344444443332
Q ss_pred ccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCC-CCchhHHHHHHHHHhh
Q 012162 82 EYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP-FSNPLQASLQNLERTT 160 (469)
Q Consensus 82 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~ 160 (469)
+...+|....+.+-.--|+.+..++..=.++...++.+++.+.+.+.+.--+ ........+..+.+..
T Consensus 101 -----------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~ 169 (278)
T PF08631_consen 101 -----------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLA 169 (278)
T ss_pred -----------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 2335666666666666788777776655666667888888888888876443 2333444444444433
No 413
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=81.69 E-value=1.1 Score=41.35 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=35.5
Q ss_pred cccccccccccccccEE-ccCCCcccHHHHHHHccc--CCCccccc
Q 012162 176 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDR--GNKCPLCR 218 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~--~~~CP~Cr 218 (469)
-.+.||+....+.+|+. ..|||.|-+.-|...+.. +..||+=+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 34589999999999975 699999999999998865 45799843
No 414
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.23 E-value=3.5 Score=39.17 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=55.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...+..+...|+++.++..+++.+..+|.+-.+|..+-.+|++.|+. ..|+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~-----------------------~~ai~~ 209 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQ-----------------------SAAIRA 209 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCc-----------------------hHHHHH
Confidence 456667888899999999999999999999999999999999999999999 888887
Q ss_pred HHHHhh
Q 012162 102 AEKLLN 107 (469)
Q Consensus 102 ~~~al~ 107 (469)
|++.-+
T Consensus 210 y~~l~~ 215 (280)
T COG3629 210 YRQLKK 215 (280)
T ss_pred HHHHHH
Confidence 776644
No 415
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.67 E-value=6.2 Score=38.60 Aligned_cols=100 Identities=14% Similarity=-0.034 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHH
Q 012162 42 ISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKAN 121 (469)
Q Consensus 42 ~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 121 (469)
...|++.++-+|.|..+|..+....-.+-.. +... .......++..+..+++|++.+|++...+..+-.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~--~~~~---------~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~ 73 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRL--QSSS---------KAERRALAERKLSILERALKHNPDSERLLLGYLE 73 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccc--cccc---------hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3568889999999999887655544333221 0000 1222344578889999999999999998888877
Q ss_pred HHHHHhHHHHHHHHHhccccCCCCCchhHHH
Q 012162 122 ALILLERYDMARDAILSGLQVDPFSNPLQAS 152 (469)
Q Consensus 122 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (469)
......+-++..+-+++++..+|++..++..
T Consensus 74 ~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~ 104 (321)
T PF08424_consen 74 EGEKVWDSEKLAKKWEELLFKNPGSPELWRE 104 (321)
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 7888888888899999999999998776543
No 416
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=80.08 E-value=4 Score=34.57 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=55.3
Q ss_pred cCccCCCCCchhHHH-HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 83 YRPLNGLDPTTHAEL-ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 83 ~~~~~~~~~~~~~~~-A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
|-.+|.-+|+++... -...+.+.+++-- -.+.....|......|+|.-|....+.++..+|+|..++......-+.+.
T Consensus 40 Y~GWfDgnP~~L~pl~p~~~A~~~v~l~G-G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 40 YLGWFDGNPANLNPLPPEEEAKRYVELAG-GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HC-S--S-GGGTS---HHHHHHHHHHHTT-CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred cCCccCCCccccCCCChHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 345677777766432 2234455555553 35677888999999999999999999999999999999999888888777
Q ss_pred hhhc
Q 012162 162 SLIG 165 (469)
Q Consensus 162 ~~~~ 165 (469)
....
T Consensus 119 ~~~~ 122 (141)
T PF14863_consen 119 YQSE 122 (141)
T ss_dssp HH-S
T ss_pred Hhcc
Confidence 6543
No 417
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.07 E-value=6 Score=40.27 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=55.3
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHh-hhccCCCCCcccCccCCCCCchhHHHHHHHHH
Q 012162 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHAELALKDAE 103 (469)
Q Consensus 25 ~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 103 (469)
+..-..-.-+.+.|.+--..|.+++...|+++++|..-|.-.+..+. . +.|-..+.
T Consensus 108 W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni-----------------------~saRalfl 164 (568)
T KOG2396|consen 108 WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNI-----------------------ESARALFL 164 (568)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccch-----------------------HHHHHHHH
Confidence 33333334445558889999999999999999999887777766665 4 88899999
Q ss_pred HHhhccccchHHHH
Q 012162 104 KLLNLQSNSMKSHL 117 (469)
Q Consensus 104 ~al~l~p~~~~~~~ 117 (469)
++|+.+|++++.|.
T Consensus 165 rgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWK 178 (568)
T ss_pred HHhhcCCCChHHHH
Confidence 99999999988654
No 418
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.74 E-value=2.2 Score=28.17 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 116 HLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 116 ~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
.+.+|.+|..+|+++.|+..++..+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999995
No 419
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=79.70 E-value=4.8 Score=45.86 Aligned_cols=101 Identities=13% Similarity=0.013 Sum_probs=89.3
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC--CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
....|...|..++++.+-++|-..+.+|++--|. +......-|..-++.|+- +.+
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa-----------------------eRG 1619 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA-----------------------ERG 1619 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc-----------------------hhh
Confidence 4566778899999999999999999999999998 566777778888888988 899
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
...|+-.+.-.|.-.+.|......-...|+.+.++..|++++.+.=
T Consensus 1620 RtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998888999999999999999988753
No 420
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=79.63 E-value=3.6 Score=29.93 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=28.1
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
..+..+..+|..+=+.|+|++|+.+|.+|+..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45777888999999999999999999999874
No 421
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.38 E-value=8.2 Score=38.15 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
..|..++.+++++.|+..-+-..-+.+|+..|+..++-..++.+.+..|.-.
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 5677888999999999999999999999999999999999999999998644
No 422
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=79.09 E-value=2.4 Score=27.76 Aligned_cols=38 Identities=21% Similarity=0.646 Sum_probs=21.9
Q ss_pred cccccccccccEE---ccCCCcccHHHHHHHcccCC--Ccccc
Q 012162 180 CTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGN--KCPLC 217 (469)
Q Consensus 180 C~ic~~~~~~p~~---~~cgh~~C~~Ci~~~~~~~~--~CP~C 217 (469)
|.+|.++...-+. ..|+-.+...|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 5677777666655 25999999999999987543 69987
No 423
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.88 E-value=1 Score=41.88 Aligned_cols=27 Identities=41% Similarity=0.928 Sum_probs=21.2
Q ss_pred CCCcccHHHHHHHcc-------------cCCCcccccccc
Q 012162 195 CGHSFCRSCLFQSMD-------------RGNKCPLCRAVL 221 (469)
Q Consensus 195 cgh~~C~~Ci~~~~~-------------~~~~CP~Cr~~~ 221 (469)
|...+|++|+.+|+. .+..||.||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 667788999988753 245799999987
No 424
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.78 E-value=5.6 Score=37.16 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH-HHHHHHHHHhhccccchH
Q 012162 36 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE-LALKDAEKLLNLQSNSMK 114 (469)
Q Consensus 36 ~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~l~p~~~~ 114 (469)
.+..+-++..++.++-+|.|..+|..|-.+.-.+|+. . .-+...+.++..|.++..
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~-----------------------s~rELef~~~~l~~DaKNYH 148 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP-----------------------SFRELEFTKLMLDDDAKNYH 148 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc-----------------------ccchHHHHHHHHhccccchh
Confidence 3456778889999999999999999888888888877 4 567888999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 115 SHLLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 115 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
+|..+-++....+.|+.-+++..+.|+.|--|..+
T Consensus 149 aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 149 AWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence 99999999999999999999998888887655544
No 425
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=78.24 E-value=38 Score=35.92 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=80.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc-------------------cccchhHHHHHHHhhhccCCCCCcc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI-------------------VLGNRSSAYIRISQFLKHRPPSASE 82 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (469)
+..+..=|..-++..+++.|....++|... |.++. +|...+...-..|-+
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf---------- 493 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF---------- 493 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH----------
Confidence 556666777778888999999999988765 33321 111112222222333
Q ss_pred cCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 83 YRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 83 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
+.....|++.+++.=-.|..-.+.|+.+....-+++|-+.|++++.+-+--...--...-+.+.++.
T Consensus 494 -------------estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 494 -------------ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred -------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 5556788999999888899999999999999999999999999999976433322233334444443
Q ss_pred h
Q 012162 163 L 163 (469)
Q Consensus 163 ~ 163 (469)
.
T Consensus 561 y 561 (835)
T KOG2047|consen 561 Y 561 (835)
T ss_pred h
Confidence 3
No 426
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.16 E-value=22 Score=31.78 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhccccc---hHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012162 96 ELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGL 140 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al 140 (469)
++|+..++.++....+. .-+-.++|.++..+|.+|+|+..++..-
T Consensus 106 d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 106 DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 99999999998765432 3356789999999999999999887643
No 427
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.43 E-value=1.8 Score=35.40 Aligned_cols=43 Identities=28% Similarity=0.695 Sum_probs=26.3
Q ss_pred CCCCccccccccccccccccEEccCCCcccHHHHHHHcccCCCcccccccccc
Q 012162 171 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223 (469)
Q Consensus 171 ~~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~ 223 (469)
+....++.+|.||...-..- .|||. |..|- ...|..|+..++.
T Consensus 59 KaGv~ddatC~IC~KTKFAD---G~GH~-C~YCq------~r~CARCGGrv~l 101 (169)
T KOG3799|consen 59 KAGVGDDATCGICHKTKFAD---GCGHN-CSYCQ------TRFCARCGGRVSL 101 (169)
T ss_pred ccccCcCcchhhhhhccccc---ccCcc-cchhh------hhHHHhcCCeeee
Confidence 35567888999998642222 68884 55552 2346666655543
No 428
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.21 E-value=3.7 Score=30.72 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=28.3
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
..+..+..+|..+=+.|+|++|+.+|..|++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45778888999999999999999999999874
No 429
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.44 E-value=11 Score=40.04 Aligned_cols=113 Identities=16% Similarity=-0.035 Sum_probs=75.7
Q ss_pred HHHHHHhHHHHHH-----hccHHHHHHHHHHHhc-----CCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCC
Q 012162 22 VFDLVQKGNRAFR-----ESNFEEAISNYSRANN-----IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 91 (469)
Q Consensus 22 ~~~~~~~g~~~~~-----~~~~~~A~~~y~~al~-----~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (469)
+.+....|..++. ..|.+.|+.+|..|.+ ..-.++.+.+.+|.+|++..... .
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~-----------------~ 306 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE-----------------K 306 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc-----------------c
Confidence 3344444555443 3689999999999977 11126778889999998743110 0
Q ss_pred chhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---HHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 92 TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE---RYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 92 ~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
.+...|+..+.++-++. ++.+.+.+|.++..-. ++..|..+|..|... .+..+...+..+
T Consensus 307 -~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~ 369 (552)
T KOG1550|consen 307 -IDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALC 369 (552)
T ss_pred -ccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHH
Confidence 01178999999998886 5678899999987544 678899999988764 344444444443
No 430
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.99 E-value=3.9 Score=23.30 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSR 47 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~ 47 (469)
.....|..+...|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 456789999999999999988763
No 431
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.26 E-value=8 Score=38.48 Aligned_cols=101 Identities=18% Similarity=0.134 Sum_probs=67.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC-Ccccc-cchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPG-DPIVL-GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~-~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..++......+.++|-|..|.+...-.+.+||. ||-.- ..+-...++.++| +--+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y-----------------------~~Li 159 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQY-----------------------QWLI 159 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCH-----------------------HHHH
Confidence 345556677888999999999999999999999 77432 2222223344444 3333
Q ss_pred HHHHHHhhc-ccc----chHHHHHHHHHHHHHhHH---------------HHHHHHHhccccCCCC
Q 012162 100 KDAEKLLNL-QSN----SMKSHLLKANALILLERY---------------DMARDAILSGLQVDPF 145 (469)
Q Consensus 100 ~~~~~al~l-~p~----~~~~~~~~g~~~~~~~~~---------------~~A~~~~~~al~~~p~ 145 (469)
..++..... ..+ -|..-|..|.++..+++- +.|...+.+|+..-|.
T Consensus 160 ~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 160 DFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 333333221 111 234567888999988888 8888888888887774
No 432
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.15 E-value=4.7 Score=30.05 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=28.2
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
..+..+..+|...=..|+|++|+.+|..|++.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 45777888898888999999999999999985
No 433
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.13 E-value=7.3 Score=29.02 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
..|...+.+|+++|... ......-.|.+|++.+.+++...|+++.......++.+.+
T Consensus 4 ~~A~~~a~~AVe~D~~g--------r~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~ 60 (75)
T cd02682 4 EMARKYAINAVKAEKEG--------NAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYK 60 (75)
T ss_pred HHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 67888888888887542 2233445678888888888888998876555444444443
No 434
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.92 E-value=30 Score=34.50 Aligned_cols=118 Identities=13% Similarity=0.007 Sum_probs=83.0
Q ss_pred HHHHHhccHHH-HHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc
Q 012162 30 NRAFRESNFEE-AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 108 (469)
Q Consensus 30 ~~~~~~~~~~~-A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 108 (469)
....+.|.|+. ++.+=.+.+.-+|+...+|+.+-.++.....- .+..+.+- +...++-+.....+++.
T Consensus 36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~---~~~~~~ek--------~~~ld~eL~~~~~~L~~ 104 (421)
T KOG0529|consen 36 QKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR---AQLEPLEK--------QALLDEELKYVESALKV 104 (421)
T ss_pred HHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh---hcCCHHHH--------HHhhHHHHHHHHHHHHh
Confidence 33445566654 77778888888999888887776666443221 00111111 11237778888999999
Q ss_pred cccchHHHHHHHHHHHHHhH--HHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 109 QSNSMKSHLLKANALILLER--YDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 109 ~p~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
+|++..+|+.+.+++..++. +..-++..+++++.||.|-.....-+-+-.
T Consensus 105 npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~ 156 (421)
T KOG0529|consen 105 NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE 156 (421)
T ss_pred CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 99999999999999987665 477788899999999988877766554443
No 435
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=74.75 E-value=0.59 Score=26.10 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=11.8
Q ss_pred ccHHHHHHHcccCCCccccccc
Q 012162 199 FCRSCLFQSMDRGNKCPLCRAV 220 (469)
Q Consensus 199 ~C~~Ci~~~~~~~~~CP~Cr~~ 220 (469)
||..|-.+.......||.|+.+
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 3445544444444567777654
No 436
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.65 E-value=12 Score=37.07 Aligned_cols=96 Identities=19% Similarity=0.125 Sum_probs=62.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
-..+.+.|..|..-|+++.|++.|.++-..-... ...+.|.-.+-..+++| ...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw-----------------------~hv 206 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNW-----------------------GHV 206 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcch-----------------------hhh
Confidence 3456677888999999999999999965554332 23444555555667887 333
Q ss_pred HHHHHHHhhc-------c-ccchHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012162 99 LKDAEKLLNL-------Q-SNSMKSHLLKANALILLERYDMARDAILSGL 140 (469)
Q Consensus 99 ~~~~~~al~l-------~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 140 (469)
.....+|.+- . --.++....-|.+...+++|..|..+|-.+-
T Consensus 207 ~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 207 LSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333333322 0 1123466677888888889999988877653
No 437
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=74.65 E-value=2.6 Score=29.03 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=22.7
Q ss_pred cCCCcccHHHHHHHcccCCCccccccccccC
Q 012162 194 PCGHSFCRSCLFQSMDRGNKCPLCRAVLFIT 224 (469)
Q Consensus 194 ~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~ 224 (469)
+-..|||..|....+ ...||-|+..+..+
T Consensus 26 SfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 26 SFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred eEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 445689999998887 45899999887544
No 438
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=74.02 E-value=2.5 Score=37.62 Aligned_cols=60 Identities=27% Similarity=0.546 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCccccccccccccccccEE-ccCCCcccHHHHHHHcccCCCcccccc
Q 012162 151 ASLQNLERTTASLIGRRIHGTPERTDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRA 219 (469)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~~~CP~Cr~ 219 (469)
..+..++..+.+.-. +....|.+|..+...-+. -+||-.|-.+|+..++.....||.|+-
T Consensus 164 ralaELe~YL~s~y~---------dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 164 RALAELEFYLSSNYA---------DNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHHHHHHHhhhH---------HHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 445555555554332 234589999998877765 689999999999999988889999964
No 439
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=73.82 E-value=15 Score=34.29 Aligned_cols=115 Identities=14% Similarity=0.095 Sum_probs=79.6
Q ss_pred HHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHH----HhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHH
Q 012162 30 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI----SQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 105 (469)
Q Consensus 30 ~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 105 (469)
..++..++.-.|+..|...+.-.|.|..++-..|.|.-++ .++. +.|. +..|.+.+..|
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~-------s~~~----------~~n~~e~~d~A 65 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWH-------SDAT----------MENAKELLDKA 65 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhh-------cccC----------hhhHHHHHHHH
Confidence 4566777888999999999999999998888777775443 2220 1111 26788888888
Q ss_pred hhcccc------chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 106 LNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 106 l~l~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
+-+... -...-++.+.+|+...+|+-|..+|..|+.+-- +..+-....+++.++..
T Consensus 66 Lm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~-~d~L~~We~rLet~L~~ 127 (368)
T COG5091 66 LMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYV-DDTLPLWEDRLETKLNK 127 (368)
T ss_pred HHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhh-cccchHHHHHHHHHHhH
Confidence 765422 122457788999999999999999999998743 33333444455555443
No 440
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=73.78 E-value=1.9 Score=42.31 Aligned_cols=27 Identities=30% Similarity=0.774 Sum_probs=19.9
Q ss_pred CCCcccHHHHHHHccc-------------CCCcccccccc
Q 012162 195 CGHSFCRSCLFQSMDR-------------GNKCPLCRAVL 221 (469)
Q Consensus 195 cgh~~C~~Ci~~~~~~-------------~~~CP~Cr~~~ 221 (469)
|....|.+|+.+|+.. ...||.||+++
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 4455688999988651 24699999986
No 441
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.75 E-value=1.4 Score=40.05 Aligned_cols=38 Identities=29% Similarity=0.651 Sum_probs=30.4
Q ss_pred cccccccccccEEccCCCc-ccHHHHHHHcccCCCcccccccc
Q 012162 180 CTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 180 C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
|..|...-..-+.+||.|. +|..|-.. ...||.|+.+.
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChh
Confidence 9999887777777899987 99999532 34699999765
No 442
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=73.53 E-value=36 Score=25.48 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=23.3
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhc
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANN 50 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~ 50 (469)
..+..+..+|..+=+.|+|++|+.+|.+||+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3466777778888888888888888877765
No 443
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.46 E-value=38 Score=29.80 Aligned_cols=96 Identities=6% Similarity=-0.003 Sum_probs=65.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccc-----hhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGN-----RSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~-----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
+.+....|....++|+-..|+..|+++-+-.| .|.+... -|..++..|.| +
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy-----------------------~ 149 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSY-----------------------D 149 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccH-----------------------H
Confidence 34556677888899999999999998766544 3433322 33445555666 4
Q ss_pred HHHHHHHH-HhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 97 LALKDAEK-LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 97 ~A~~~~~~-al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
......+. +-+-+|--..+.-.+|.+-.+.|+|.+|..+|.+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 43333332 2334555566777788899999999999999998776
No 444
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=73.33 E-value=8.9 Score=37.51 Aligned_cols=83 Identities=18% Similarity=-0.017 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHH
Q 012162 36 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS 115 (469)
Q Consensus 36 ~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 115 (469)
.-.+..+..|++||+.+|++..++..+-.+..+..+- ++..+.+++++..+|+++..
T Consensus 45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~-----------------------~~l~~~we~~l~~~~~~~~L 101 (321)
T PF08424_consen 45 ALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS-----------------------EKLAKKWEELLFKNPGSPEL 101 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-----------------------HHHHHHHHHHHHHCCCChHH
Confidence 3356788999999999998888765543333333333 66778899999999998776
Q ss_pred HHHHHHHHH---HHhHHHHHHHHHhcccc
Q 012162 116 HLLKANALI---LLERYDMARDAILSGLQ 141 (469)
Q Consensus 116 ~~~~g~~~~---~~~~~~~A~~~~~~al~ 141 (469)
|...-.... ..-.+++.+..|.++++
T Consensus 102 W~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 102 WREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 654332221 12235666666666654
No 445
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.23 E-value=10 Score=39.86 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=60.2
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccc------cchHHHHHHHHHHHHHhHHH
Q 012162 57 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS------NSMKSHLLKANALILLERYD 130 (469)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p------~~~~~~~~~g~~~~~~~~~~ 130 (469)
.++++-|.-++++.+| ..+++.|...+..-| ..++....++.+|..+.+.|
T Consensus 355 ~iLWn~A~~~F~~~~Y-----------------------~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD 411 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKY-----------------------VVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLD 411 (872)
T ss_pred HHHHHhhHHHHHHHHH-----------------------HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHH
Confidence 4566777888999999 999999999887544 44677888899999999999
Q ss_pred HHHHHHhccccCCCCCchhHH
Q 012162 131 MARDAILSGLQVDPFSNPLQA 151 (469)
Q Consensus 131 ~A~~~~~~al~~~p~~~~~~~ 151 (469)
.|.++++.|=+.+|.+.-.+.
T Consensus 412 ~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 412 NAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHHHHHHhhccccHHHHH
Confidence 999999999999998875443
No 446
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.16 E-value=24 Score=32.19 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=54.1
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc
Q 012162 29 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 108 (469)
Q Consensus 29 g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 108 (469)
...+.+.+...+||.....-++.+|.+......+=..|.-.|+| ++|+..++-+-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw-----------------------~kAl~Ql~l~a~l 64 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDW-----------------------EKALAQLNLAATL 64 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchH-----------------------HHHHHHHHHHhhc
Confidence 34677788889999999999999999998888877888888999 9999999999999
Q ss_pred cccchH
Q 012162 109 QSNSMK 114 (469)
Q Consensus 109 ~p~~~~ 114 (469)
.|++..
T Consensus 65 ~p~~t~ 70 (273)
T COG4455 65 SPQDTV 70 (273)
T ss_pred Ccccch
Confidence 998754
No 447
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=72.23 E-value=23 Score=37.41 Aligned_cols=110 Identities=19% Similarity=0.148 Sum_probs=79.6
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 107 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 107 (469)
.++..-.-|-|+.-...|++.+++.=..|.+-.|.|..+-...-+ ++|.+.|++.+.
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf-----------------------eesFk~YErgI~ 539 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF-----------------------EESFKAYERGIS 539 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH-----------------------HHHHHHHHcCCc
Confidence 344444558888889999999999888888888888877777777 999999999999
Q ss_pred ccc--cchH---HHHHHHHHHHHHhHHHHHHHHHhccccCCCCC--chhHHHHHHHHHhh
Q 012162 108 LQS--NSMK---SHLLKANALILLERYDMARDAILSGLQVDPFS--NPLQASLQNLERTT 160 (469)
Q Consensus 108 l~p--~~~~---~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~ 160 (469)
+-+ +-.+ .|......-+.-.+.+.|.+.|++||+..|.. +.+....+.+++..
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 863 3333 44445555556667899999999999998832 22333445555544
No 448
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.77 E-value=5.4 Score=42.67 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=29.4
Q ss_pred ccccccccccccc-------ccEEccCCCcccHHHHHHHcccCCCccccc
Q 012162 176 DDFDCTLCLKLLY-------EPITTPCGHSFCRSCLFQSMDRGNKCPLCR 218 (469)
Q Consensus 176 ~~~~C~ic~~~~~-------~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr 218 (469)
..-.|+.|..... .-+.+.|||.|.+.|+.....++. |-.|.
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 3448999987544 345689999999999976554433 55554
No 449
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.41 E-value=16 Score=38.72 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=71.0
Q ss_pred HHhHHHHHHh----c-cHHHHHHHHHHHhcCCCCCcccccchhHHHHHHH---hhhccCCCCCcccCccCCCCCchhHHH
Q 012162 26 VQKGNRAFRE----S-NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS---QFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 26 ~~~g~~~~~~----~-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
...|..|.+. . |+..|+.+|.+|-++. ++.+.+.+|.+|..-. ++ ..
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~-----------------------~~ 346 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDY-----------------------RR 346 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccH-----------------------HH
Confidence 3456666653 2 7899999999999886 5677777888876544 33 78
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHH----HhHHHHHHHHHhccccCC
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVD 143 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~ 143 (469)
|..++..|.+.. +..+.+++|.+|.. ..+...|..+|+++.+.+
T Consensus 347 A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 347 AFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 999999988764 67899999998864 457899999999999887
No 450
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.31 E-value=14 Score=35.29 Aligned_cols=104 Identities=14% Similarity=0.035 Sum_probs=70.3
Q ss_pred HHHHHhHHHHHH----hccHHHHHHHHHHHhcCCCCCc-ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 23 FDLVQKGNRAFR----ESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 23 ~~~~~~g~~~~~----~~~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
......|..+.. ..|+.+|...|.+|.+..-..+ .+...++.+|..-. . + ....-+...
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~-~--------------~~~~~~~~~ 173 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-Q-A--------------LAVAYDDKK 173 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-h-h--------------hcccHHHHh
Confidence 344556666665 4599999999999998853332 22455555554421 0 0 000111157
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHH----HhHHHHHHHHHhccccCCC
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDP 144 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p 144 (469)
|+..+.++-... ++.+.+.+|..|.. ..++.+|..+|++|-+...
T Consensus 174 A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 174 ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888888888776 78899999988854 4588999999999998776
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=71.25 E-value=4.6 Score=40.51 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=34.6
Q ss_pred HHHHHHHHHH--------hhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 96 ELALKDAEKL--------LNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 96 ~~A~~~~~~a--------l~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
..|++.++-. -+.-+-+...+|..|.+|..+++|.+|+..|...|-
T Consensus 139 ~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 139 YQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777655332 112344567899999999999999999999998764
No 452
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=71.22 E-value=7.4 Score=28.92 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=28.2
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
...+..+..+|..+=..|+|++|+.+|.+|++.
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456778888999998999999999999998764
No 453
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.88 E-value=5.6 Score=37.73 Aligned_cols=41 Identities=17% Similarity=0.009 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAI 136 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~ 136 (469)
.+|+...++++.++|-+...+..+-.+|..+|+--.|+..|
T Consensus 296 neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 296 NEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 44444444444444444444444444444444433333333
No 454
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=70.39 E-value=4.7 Score=34.45 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=33.1
Q ss_pred cccccccccccccccEEccCCC--c---ccHHHHHHHcccC--CCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGH--S---FCRSCLFQSMDRG--NKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh--~---~C~~Ci~~~~~~~--~~CP~Cr~~~~ 222 (469)
....|-||.+.-. +...||.- + -..+|+..|...+ ..|+.|+.+..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4458999987754 33456653 2 3799999999754 47999998874
No 455
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.31 E-value=14 Score=31.47 Aligned_cols=64 Identities=19% Similarity=0.003 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
+++...+...--+.|+.+.....-|..+...|++++|+..|+...+-.+..+-.+..+.-+-..
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 6666666666678999999999999999999999999999999888776666554444443333
No 456
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=69.80 E-value=8.3 Score=28.64 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.9
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
..+..+..+|...=..|+|++|+.+|.+|++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45778889999999999999999999999874
No 457
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=69.28 E-value=22 Score=28.70 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=51.9
Q ss_pred hhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccch---HHHHHHHHHHHHHhH----------
Q 012162 62 RSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM---KSHLLKANALILLER---------- 128 (469)
Q Consensus 62 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~~g~~~~~~~~---------- 128 (469)
+|.-++..|++ -+|++..+..+...+++. ..+..-|.++..+..
T Consensus 2 ~A~~~~~rGnh-----------------------iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~ 58 (111)
T PF04781_consen 2 KAKDYFARGNH-----------------------IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFR 58 (111)
T ss_pred hHHHHHHccCH-----------------------HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHH
Confidence 56778889999 899999999999888776 456667888866544
Q ss_pred -HHHHHHHHhccccCCCCCchh
Q 012162 129 -YDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 129 -~~~A~~~~~~al~~~p~~~~~ 149 (469)
.-.|++.|.++..+.|+.+..
T Consensus 59 yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 59 YLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred HHHHhHHHHHHHhccChhHHHH
Confidence 356899999999999988543
No 458
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.21 E-value=15 Score=33.43 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
.+|+..++.-++-+|.+......+-..|.-.|+|++|...++-+-.+.|++..
T Consensus 18 ~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 18 QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 99999999999999999999999999999999999999999999999998764
No 459
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=68.66 E-value=0.65 Score=33.77 Aligned_cols=40 Identities=28% Similarity=0.520 Sum_probs=22.2
Q ss_pred cccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 178 ~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
..||.|...+. ..-|+.+|..|-..+ .....||.|.+++.
T Consensus 2 ~~CP~C~~~L~----~~~~~~~C~~C~~~~-~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELE----WQGGHYHCEACQKDY-KKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEE----EETTEEEETTT--EE-EEEEE-TTT-SB-E
T ss_pred CcCCCCCCccE----EeCCEEECccccccc-eecccCCCcccHHH
Confidence 57999986533 233899999997643 33457999999873
No 460
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=68.18 E-value=9.3 Score=28.47 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=28.1
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
..+..+..+|...=..|+|++|+.+|..|++.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45778888999999999999999999999874
No 461
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.05 E-value=7.5 Score=34.94 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 112 SMKSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
.+...+.+|..|. ..+.++|+..+.++|++.+
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~ 171 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSN 171 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC
Confidence 3444444444443 4455555555555555543
No 462
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.78 E-value=3.5 Score=29.83 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=23.6
Q ss_pred EccCCCcccHHHHHHHcccCCCccccccccccC
Q 012162 192 TTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFIT 224 (469)
Q Consensus 192 ~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~ 224 (469)
+-.-.++||.+|.+..+. ..||-|+..+...
T Consensus 24 ICtfEcTFCadCae~~l~--g~CPnCGGelv~R 54 (84)
T COG3813 24 ICTFECTFCADCAENRLH--GLCPNCGGELVAR 54 (84)
T ss_pred EEEEeeehhHhHHHHhhc--CcCCCCCchhhcC
Confidence 335568999999987663 4799999888543
No 463
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.64 E-value=64 Score=33.00 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=69.9
Q ss_pred hccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchH
Q 012162 35 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 114 (469)
Q Consensus 35 ~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 114 (469)
.|+.++|+..+-..-.+.|+-..+....-.+..-.+.-+|..-+..+. .+-+.++++.+-.+..+..
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 777 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITS-------------YEHLDYAKKLLVFDSENAY 777 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccch-------------hhhHhhhhhheeeccchHH
Confidence 478899998887777788875543322212111112222222222222 5667788889999999988
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 115 SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 115 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
++-..+.--+.+.+|..|++++++.-+.+.-.......+..
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (831)
T PRK15180 778 ALKYAALNAMHLRDYTQALQYWQRLEKVNGPTEPVTRQIST 818 (831)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCcchHHHHHH
Confidence 88888888889999999999999987776443333333333
No 464
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=67.41 E-value=3.1 Score=39.26 Aligned_cols=44 Identities=27% Similarity=0.855 Sum_probs=35.2
Q ss_pred ccccccccccccc----ccEEccCCCcccHHHHHHHcccCCCcccccc
Q 012162 176 DDFDCTLCLKLLY----EPITTPCGHSFCRSCLFQSMDRGNKCPLCRA 219 (469)
Q Consensus 176 ~~~~C~ic~~~~~----~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~ 219 (469)
....||+|.+.+. .|..++|||..-..|+....-.+..||.|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3445999987543 4566899999999999988777789999987
No 465
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.46 E-value=12 Score=34.33 Aligned_cols=69 Identities=10% Similarity=0.000 Sum_probs=49.2
Q ss_pred HHHHHHhHHHHHHhcc-------HHHHHHHHHHHhcCCCC------CcccccchhHHHHHHHhhhccCCCCCcccCccCC
Q 012162 22 VFDLVQKGNRAFRESN-------FEEAISNYSRANNIKPG------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNG 88 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~-------~~~A~~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (469)
|..+...|-.+-..|+ +..|+..|.+|++.... ...+.+.+|..+.++|++
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~---------------- 181 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNY---------------- 181 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCH----------------
Confidence 4444444444444444 67788888888876543 236778899999999999
Q ss_pred CCCchhHHHHHHHHHHHhhccccch
Q 012162 89 LDPTTHAELALKDAEKLLNLQSNSM 113 (469)
Q Consensus 89 ~~~~~~~~~A~~~~~~al~l~p~~~ 113 (469)
++|+..+.+++.....+.
T Consensus 182 -------~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 182 -------DEAKRWFSRVIGSKKASK 199 (214)
T ss_pred -------HHHHHHHHHHHcCCCCCC
Confidence 999999999998765443
No 466
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=66.28 E-value=8.1 Score=29.10 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=29.4
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
..+.|..+.++|..+=..|+.++|+.+|++++..
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 3567888899999998899999999999999875
No 467
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=65.68 E-value=11 Score=27.81 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=26.9
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
..+..+..+|...=..|+|++|+.+|..|++.
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677788888888889999999999999864
No 468
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.40 E-value=15 Score=36.47 Aligned_cols=77 Identities=16% Similarity=-0.005 Sum_probs=59.9
Q ss_pred hcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh---------c-----c-----
Q 012162 49 NNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN---------L-----Q----- 109 (469)
Q Consensus 49 l~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---------l-----~----- 109 (469)
+...|-..+.+..++.++...|++ ..|.+..++|+- . +
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~-----------------------~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDH-----------------------AQANDLLERALFAFERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Confidence 567898999999999999999998 666666655542 1 1
Q ss_pred -------ccc---hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC-Cch
Q 012162 110 -------SNS---MKSHLLKANALILLERYDMARDAILSGLQVDPF-SNP 148 (469)
Q Consensus 110 -------p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 148 (469)
+.| ..+.++....+...|-+.-|+++.+-.+.+||. |+-
T Consensus 90 ~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 90 CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 112 336677788888999999999999999999999 554
No 469
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=65.08 E-value=44 Score=35.00 Aligned_cols=129 Identities=12% Similarity=-0.078 Sum_probs=92.2
Q ss_pred CCCChhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCC
Q 012162 12 GSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 91 (469)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (469)
..+.+-...+...|..-...-...|+++.....|++++---......|.+.+...-..|+.
T Consensus 287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~------------------- 347 (577)
T KOG1258|consen 287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDV------------------- 347 (577)
T ss_pred cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCch-------------------
Confidence 3344444455555655566667889999999999999887767777777777666666665
Q ss_pred chhHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 92 TTHAELALKDAEKLLNLQ-SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 92 ~~~~~~A~~~~~~al~l~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
.-|-....++.++. |..+..+..-+..-...|+++.|...+++..+--|+.-.+......+++..++.
T Consensus 348 ----~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 348 ----SLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred ----hHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 56665566666654 666777777777778899999999999999877788777655555555554443
No 470
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=64.97 E-value=10 Score=30.43 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=37.5
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR 68 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~ 68 (469)
..+++.....+|-..+-.|||..|.+...++-+..+..+..|..-|.+-..
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~ 105 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQA 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 455678888999999999999999999999977755444444433444333
No 471
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.09 E-value=19 Score=34.36 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
.+|...+..++..+|++.++...++.+|...|+.+.|...+...
T Consensus 151 ~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 151 GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 89999999999999999999999999999999999998877763
No 472
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.42 E-value=24 Score=35.23 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=76.7
Q ss_pred HhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccch
Q 012162 34 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 113 (469)
Q Consensus 34 ~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~ 113 (469)
+..-.++-+.+...+++.+|+...+|+.|..++.+.+.. ....-+..++++++.||.|.
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~---------------------~~~~EL~lcek~L~~D~RNf 145 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS---------------------DWNTELQLCEKALKQDPRNF 145 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc---------------------hHHHHHHHHHHHHhcCcccc
Confidence 334567778889999999999999999999998765432 11777899999999999999
Q ss_pred HHHHHHHHHHHHHhH----HHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 114 KSHLLKANALILLER----YDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 114 ~~~~~~g~~~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
.+|..+-.+...... ..+=+++..+++.-|+.|-.++..-..+
T Consensus 146 h~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~l 192 (421)
T KOG0529|consen 146 HAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLL 192 (421)
T ss_pred cchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHH
Confidence 988877766654333 3555677788888788776666554444
No 473
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=62.85 E-value=13 Score=38.12 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=55.5
Q ss_pred HHHHHhHHHHHHh---ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 23 FDLVQKGNRAFRE---SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 23 ~~~~~~g~~~~~~---~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.-|.+++.+++++ |+.-.|+..-..|++++|....+|+.++.++..++++ .+|+
T Consensus 409 ~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~-----------------------~eal 465 (758)
T KOG1310|consen 409 YLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRY-----------------------LEAL 465 (758)
T ss_pred HHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhH-----------------------HHhh
Confidence 3444566666554 6677789999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccc
Q 012162 100 KDAEKLLNLQSNS 112 (469)
Q Consensus 100 ~~~~~al~l~p~~ 112 (469)
.....+....|.+
T Consensus 466 ~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 466 SCHWALQMSFPTD 478 (758)
T ss_pred hhHHHHhhcCchh
Confidence 9888887777755
No 474
>PHA02862 5L protein; Provisional
Probab=62.63 E-value=6 Score=33.12 Aligned_cols=44 Identities=23% Similarity=0.504 Sum_probs=31.6
Q ss_pred ccccccccccccEEccCCC-----cccHHHHHHHcccC--CCcccccccccc
Q 012162 179 DCTLCLKLLYEPITTPCGH-----SFCRSCLFQSMDRG--NKCPLCRAVLFI 223 (469)
Q Consensus 179 ~C~ic~~~~~~p~~~~cgh-----~~C~~Ci~~~~~~~--~~CP~Cr~~~~~ 223 (469)
.|-||.+.-.+. ..||.- --...|+.+|+..+ ..|+.|+.+...
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 688998875544 356542 24689999999754 379999988743
No 475
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=62.45 E-value=21 Score=38.77 Aligned_cols=76 Identities=16% Similarity=0.052 Sum_probs=51.4
Q ss_pred HHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccc
Q 012162 31 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 110 (469)
Q Consensus 31 ~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 110 (469)
.+...|-.++|...|.+.-+.| .+-..|...|.| .+|++.++.--++.=
T Consensus 809 LAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w-----------------------~eA~eiAE~~DRiHL 857 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMW-----------------------SEAFEIAETKDRIHL 857 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccH-----------------------HHHHHHHhhccceeh
Confidence 3445566777777777765433 122345555666 677666655444433
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 111 NSMKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
-..||+.|.-+...++.+.|+++|+++
T Consensus 858 --r~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 858 --RNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred --hhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 347899999999999999999999986
No 476
>PRK04023 DNA polymerase II large subunit; Validated
Probab=62.42 E-value=4.1 Score=44.94 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=38.8
Q ss_pred ccccccccccccccccEEccCCC-----cccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHH
Q 012162 175 TDDFDCTLCLKLLYEPITTPCGH-----SFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQK 240 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~~cgh-----~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 240 (469)
.....|+-|.........-.||. .||..|- .......||.|+..+... ......+++++.+
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~~~---s~~~i~l~~~~~~ 689 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPTPY---SKRKIDLKELYDR 689 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCCcc---ceEEecHHHHHHH
Confidence 34558999998765555567984 5999993 223345799999887432 2233445555444
No 477
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.73 E-value=5.6 Score=23.29 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHHhcCCCCCcccccc
Q 012162 36 SNFEEAISNYSRANNIKPGDPIVLGN 61 (469)
Q Consensus 36 ~~~~~A~~~y~~al~~~p~~~~~~~~ 61 (469)
|+++.|...|++++...|.++.+|..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHH
Confidence 57889999999999999987777654
No 478
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.35 E-value=43 Score=33.61 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=34.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc--ccccchhHHHHHHHh
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP--IVLGNRSSAYIRISQ 71 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~--~~~~~~a~~~~~~~~ 71 (469)
.....++..+|+.++|..|...+.....--|.+. ..+..++.+|..-..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~ 182 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDR 182 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHc
Confidence 4556788999999999999999999988423333 345555566655443
No 479
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=61.31 E-value=7.7 Score=28.74 Aligned_cols=44 Identities=25% Similarity=0.618 Sum_probs=19.7
Q ss_pred ccccccccccc-----ccEE--ccCCCcccHHHHHHHcccC-CCcccccccc
Q 012162 178 FDCTLCLKLLY-----EPIT--TPCGHSFCRSCLFQSMDRG-NKCPLCRAVL 221 (469)
Q Consensus 178 ~~C~ic~~~~~-----~p~~--~~cgh~~C~~Ci~~~~~~~-~~CP~Cr~~~ 221 (469)
-.|.||.+... ++.. ..|+.-.|+.|.+--...+ ..||.|+.+.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 37999987543 3444 4799999999987655444 5799999765
No 480
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=61.15 E-value=53 Score=35.19 Aligned_cols=86 Identities=19% Similarity=0.131 Sum_probs=58.1
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
+...-.++...|........|++|.++|.+.-. ..+...|++++..| ++
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f-----------------------~~ 840 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELF-----------------------GE 840 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhh-----------------------hh
Confidence 344456667778888888888888888876533 34566778888777 33
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhc
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILS 138 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 138 (469)
++....--|++.+.+-.+|..+...|--++|..+|-+
T Consensus 841 ----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 841 ----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred ----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 3333334466667777777777777777777777655
No 481
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.99 E-value=23 Score=35.60 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=67.5
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHh-----------cCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCC
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRAN-----------NIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGL 89 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al-----------~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (469)
-+.-+..+|.++.+...|.+|+..+-.|= +.-.+.+.+-..+-+||+.+.+. ++ .+|.+.+.
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkni-tc--L~DAe~RL---- 234 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNI-TC--LPDAEVRL---- 234 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhccc-cc--CChHHHHH----
Confidence 35667789999999999999998876653 33334555566678899999886 21 22222222
Q ss_pred CCchhHHHHHHHH--------HHHhhcc-ccchH------HHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 90 DPTTHAELALKDA--------EKLLNLQ-SNSMK------SHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 90 ~~~~~~~~A~~~~--------~~al~l~-p~~~~------~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
..|-+-| .+...+. +..|+ .+..-|.+.+..|+-++|..+++.|..
T Consensus 235 ------~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 ------VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred ------HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3333333 2333332 22222 334447788889999999888887754
No 482
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.57 E-value=16 Score=33.71 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=37.3
Q ss_pred ccccccccccccccccEE----ccCCCcccHHHHHHHcccCCCcccccccccc
Q 012162 175 TDDFDCTLCLKLLYEPIT----TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~----~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~ 223 (469)
.-.|.|+|-.-.|..-.. .+|||.|-..-+.+.- ...|++|......
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccc
Confidence 467899998888777643 5899999999987764 5589999998743
No 483
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=59.56 E-value=17 Score=27.10 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=27.3
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
..+..+..+|...=..|+|++|..+|..+++.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45677888888888999999999999999874
No 484
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=59.55 E-value=24 Score=28.87 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcccc------------chHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 96 ELALKDAEKLLNLQSN------------SMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
++|...+++|.+..-. +.-.|-.++.++..+|+|++++..-+++|.
T Consensus 26 ~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 26 EEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 8888888888875422 344667788899999999998887777765
No 485
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=59.47 E-value=4.9 Score=42.81 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=32.2
Q ss_pred cccccccccccccccEE----c---cCCCcccHHHHHHHccc------CCCcccccccc
Q 012162 176 DDFDCTLCLKLLYEPIT----T---PCGHSFCRSCLFQSMDR------GNKCPLCRAVL 221 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~----~---~cgh~~C~~Ci~~~~~~------~~~CP~Cr~~~ 221 (469)
....|++|..-+.+|+- . .|+|.||..||..|..+ ...|+.|..-+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 34478888877777542 2 49999999999998763 23577776544
No 486
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=59.42 E-value=8.1 Score=36.64 Aligned_cols=46 Identities=11% Similarity=-0.126 Sum_probs=36.4
Q ss_pred CccccccccccccccccEEccCCCc-ccHHHHHHHcccCCCcccccccc
Q 012162 174 RTDDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
.-..+.|-.|..-+-..+..+|||+ ||.+|.. +..+..||+|....
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 3455688889888888888999998 9999987 44456899998654
No 487
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.66 E-value=5.8 Score=34.26 Aligned_cols=46 Identities=22% Similarity=0.588 Sum_probs=32.4
Q ss_pred cccccccccccccc-----E--EccCCCcccHHHHHHHccc------C-----CCccccccccc
Q 012162 177 DFDCTLCLKLLYEP-----I--TTPCGHSFCRSCLFQSMDR------G-----NKCPLCRAVLF 222 (469)
Q Consensus 177 ~~~C~ic~~~~~~p-----~--~~~cgh~~C~~Ci~~~~~~------~-----~~CP~Cr~~~~ 222 (469)
...|.||...--+- + ...||..|..-|+..|+.. + ..||-|..++.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 34677777533222 2 1579999999999999862 2 25999998874
No 488
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=58.48 E-value=1.3e+02 Score=28.67 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=72.0
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCC--CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH-HHHHHHHHH
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA-ELALKDAEK 104 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~ 104 (469)
....++..++|++=-..|.+..+-..+ .....+..+.... + ++..++.... ......++.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~--~---------------l~D~~~~~~~~~~~~~~Lka 68 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSS--T---------------LFDMDSVVDAWQARLAVLKA 68 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhc--c---------------ccCcchhhhHHHhHHHHHHH
Confidence 456778889998888888887654332 1111111111110 0 1111111100 124445555
Q ss_pred HhhccccchHHHHHHHHHHHH----------------------HhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 105 LLNLQSNSMKSHLLKANALIL----------------------LERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 105 al~l~p~~~~~~~~~g~~~~~----------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
=++-.|++..++...|..+.. ..-.+.|..++.+|++++|....+...+..+-..++.
T Consensus 69 Wv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 69 WVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 567899999999999988765 2224789999999999999988887777766655544
No 489
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=58.39 E-value=7.7 Score=44.41 Aligned_cols=59 Identities=24% Similarity=0.634 Sum_probs=39.3
Q ss_pred Cccccccccccc-c-cccc-EEccCCCcccHHHHHHHccc---------CC-CccccccccccCCCcccCcccHHHHHHH
Q 012162 174 RTDDFDCTLCLK-L-LYEP-ITTPCGHSFCRSCLFQSMDR---------GN-KCPLCRAVLFITPRTCAVSVTLNSIIQK 240 (469)
Q Consensus 174 ~~~~~~C~ic~~-~-~~~p-~~~~cgh~~C~~Ci~~~~~~---------~~-~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 240 (469)
.+-+-.|-||+- . --.| +.+.|+|.|...|....+++ ++ .||.|..++.. ..|+++++-
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH--------~~LkDLldP 3554 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH--------IVLKDLLDP 3554 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh--------HHHHHHHHH
Confidence 344557889984 3 3345 56899999999998654432 22 69999987632 245666654
No 490
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.77 E-value=17 Score=32.40 Aligned_cols=49 Identities=27% Similarity=0.183 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
...++.+++.++..|+ +..+.+++.++..+|+.++|.+...++..+-|.
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 5677788889998884 789999999999999999999999999999993
No 491
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=57.42 E-value=5.6 Score=28.40 Aligned_cols=12 Identities=42% Similarity=0.968 Sum_probs=8.5
Q ss_pred cccHHHHHHHcc
Q 012162 198 SFCRSCLFQSMD 209 (469)
Q Consensus 198 ~~C~~Ci~~~~~ 209 (469)
-|||.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 492
>PF12854 PPR_1: PPR repeat
Probab=57.41 E-value=15 Score=22.40 Aligned_cols=27 Identities=11% Similarity=-0.069 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHhc
Q 012162 112 SMKSHLLKANALILLERYDMARDAILS 138 (469)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~A~~~~~~ 138 (469)
+...|..+-.+|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 346788899999999999999999875
No 493
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=57.38 E-value=22 Score=33.86 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=59.3
Q ss_pred HHHhccHHHHHHHHHHHhcCC-CCCcccccchhHHHH-------HHH-hhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 32 AFRESNFEEAISNYSRANNIK-PGDPIVLGNRSSAYI-------RIS-QFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 32 ~~~~~~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
+.++||++.|..+|.++-... ..+|.....++..++ ..+ ++ +.|...+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~-----------------------~~a~~wL 59 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKY-----------------------EEAVKWL 59 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCCh-----------------------HHHHHHH
Confidence 457899999999999997665 445544444444444 444 55 7888888
Q ss_pred HHHhhc----c---ccc-------hHHHHHHHHHHHHHhHHH---HHHHHHhccccCCCCCchhH
Q 012162 103 EKLLNL----Q---SNS-------MKSHLLKANALILLERYD---MARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 103 ~~al~l----~---p~~-------~~~~~~~g~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~ 150 (469)
++|.++ . ... ...+..++.+|...+.++ +|....+.+-.-.|+.+...
T Consensus 60 ~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 60 QRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 777776 2 111 235666777777665553 45555555544456555544
No 494
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.37 E-value=17 Score=34.66 Aligned_cols=47 Identities=13% Similarity=0.008 Sum_probs=41.5
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhh
Q 012162 26 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 72 (469)
Q Consensus 26 ~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 72 (469)
...+..|...|.|.+|+.+-++++.++|-+...+..+-..+..+|+-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence 34567788899999999999999999999988888888889888886
No 495
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.00 E-value=19 Score=35.33 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=45.9
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC--------CcccccchhHHHHHHHhh
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG--------DPIVLGNRSSAYIRISQF 72 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~--------~~~~~~~~a~~~~~~~~~ 72 (469)
.....+..+...|+.++..++|++|...|..|..+... ...+++..|.+++.++++
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~ 99 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKE 99 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999987432 346677778888887776
No 496
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.85 E-value=1.2e+02 Score=31.25 Aligned_cols=132 Identities=15% Similarity=0.052 Sum_probs=0.0
Q ss_pred CCCChhhhhhHHHHHHhHHHHHHh-ccHHHHHHHHHHHhcCCCCCc-------ccccchhHHHHHHH-hhhccCCCCCcc
Q 012162 12 GSLPWDRYTHVFDLVQKGNRAFRE-SNFEEAISNYSRANNIKPGDP-------IVLGNRSSAYIRIS-QFLKHRPPSASE 82 (469)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~y~~al~~~p~~~-------~~~~~~a~~~~~~~-~~~~~~~~~~~~ 82 (469)
.+..+...-.+....+.|..++.- .|++.|..++++|..+...-+ .++..+|.+|.... .+
T Consensus 36 ~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~---------- 105 (629)
T KOG2300|consen 36 FQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSF---------- 105 (629)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCC----------
Q ss_pred cCccCCCCCchhHHHHHHHHHHHhhccccchH----HHHHHHHHHHHHhHHHHHHHHHhccccC----------------
Q 012162 83 YRPLNGLDPTTHAELALKDAEKLLNLQSNSMK----SHLLKANALILLERYDMARDAILSGLQV---------------- 142 (469)
Q Consensus 83 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~----~~~~~g~~~~~~~~~~~A~~~~~~al~~---------------- 142 (469)
..|...+.+|+++..+.|. ..+.+++.+.-.++|..|++.+.-..+-
T Consensus 106 -------------~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls 172 (629)
T KOG2300|consen 106 -------------PPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLS 172 (629)
T ss_pred -------------chHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHH
Q ss_pred -------CCCCchhHHHHHHHHHhhhhhhcc
Q 012162 143 -------DPFSNPLQASLQNLERTTASLIGR 166 (469)
Q Consensus 143 -------~p~~~~~~~~~~~~~~~~~~~~~~ 166 (469)
.+++.++...+..+.....+...+
T Consensus 173 ~~~ll~me~d~~dV~~ll~~~~qi~~n~~sd 203 (629)
T KOG2300|consen 173 MLMLLIMERDDYDVEKLLQRCGQIWQNISSD 203 (629)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHhccCCC
No 497
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=56.75 E-value=63 Score=36.47 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=71.4
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHH
Q 012162 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 104 (469)
Q Consensus 25 ~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 104 (469)
+..++...-....|.+|+..|++ +--.|..|--|.+.|.+|.++++| .+-++.+.-
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 577 (932)
T PRK13184 522 LLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEY-----------------------NEEIKSLLL 577 (932)
T ss_pred HHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhH-----------------------HHHHHHHHH
Confidence 33334333333467888888877 344677778889999999999999 999999999
Q ss_pred HhhccccchHHHHHHHHHHHHH-----hHHHHHHHHHhccccCCCCCchhH
Q 012162 105 LLNLQSNSMKSHLLKANALILL-----ERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 105 al~l~p~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
|++.-|+.|..-...-.+-+.+ .+-..|....--++...|......
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 578 ALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR 628 (932)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch
Confidence 9999999887654444433322 223456666677788888765543
No 498
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.23 E-value=48 Score=33.44 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=66.0
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCC---------CCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIK---------PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~---------p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
..+......+.-.|||..|++..+- ++++ +.....++..|.+|+-+++|
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY--------------------- 180 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRY--------------------- 180 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHH---------------------
Confidence 4445556667778999999998765 3332 23457788999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHH-HHhHHHHHHHHHhccccCCCC
Q 012162 94 HAELALKDAEKLLNLQSNSMKSHLLKANALI-LLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~ 145 (469)
.+|++.+...+-.--.....+.....-+- -.+..|+....+--++.+.|.
T Consensus 181 --~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 181 --ADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred --HHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 99999998877543222212222222232 245566777777777788885
No 499
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.20 E-value=6.9 Score=40.19 Aligned_cols=36 Identities=28% Similarity=0.732 Sum_probs=30.0
Q ss_pred Cccccccccccccccc-cEEccCCCcccHHHHHHHcc
Q 012162 174 RTDDFDCTLCLKLLYE-PITTPCGHSFCRSCLFQSMD 209 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~-p~~~~cgh~~C~~Ci~~~~~ 209 (469)
.....+|.+|...... .+...|||.||..|...+++
T Consensus 67 ~~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CCccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 3456799999988875 56689999999999999876
No 500
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.93 E-value=9 Score=36.38 Aligned_cols=47 Identities=28% Similarity=0.568 Sum_probs=35.0
Q ss_pred Ccccccccccccccc--c-cEEccCCCcccHHHHHHHcccC---CCccccccc
Q 012162 174 RTDDFDCTLCLKLLY--E-PITTPCGHSFCRSCLFQSMDRG---NKCPLCRAV 220 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~--~-p~~~~cgh~~C~~Ci~~~~~~~---~~CP~Cr~~ 220 (469)
....|.||+-.+.-. + |+.+.|||..-+..+.....+| +.||-|-..
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 346678988765432 2 6889999999999998876654 579999654
Done!