Query 012162
Match_columns 469
No_of_seqs 607 out of 3918
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 03:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m65_A ATP-dependent protease 100.0 2.2E-34 7.7E-39 262.9 19.1 193 263-469 8-208 (209)
2 3ljc_A ATP-dependent protease 100.0 4.1E-33 1.4E-37 261.6 14.7 193 262-468 16-216 (252)
3 1zbo_A Hypothetical protein BP 100.0 1.1E-32 3.8E-37 251.8 15.8 190 263-465 3-202 (210)
4 2c2l_A CHIP, carboxy terminus 100.0 4.4E-30 1.5E-34 246.1 11.1 198 21-243 3-273 (281)
5 2ane_A ATP-dependent protease 99.9 2.3E-21 7.9E-26 160.6 11.2 101 263-363 17-125 (125)
6 4gco_A Protein STI-1; structur 99.8 6E-20 2E-24 153.5 8.8 114 20-156 11-124 (126)
7 2hr2_A Hypothetical protein; a 99.8 7.3E-19 2.5E-23 150.8 6.4 125 18-165 7-154 (159)
8 3rkv_A Putative peptidylprolyl 99.7 1.1E-17 3.8E-22 145.5 8.1 126 17-165 6-150 (162)
9 4gcn_A Protein STI-1; structur 99.7 2.2E-17 7.6E-22 137.9 8.6 116 18-157 4-126 (127)
10 3upv_A Heat shock protein STI1 99.7 3.5E-17 1.2E-21 135.9 8.1 118 20-160 2-125 (126)
11 3sz7_A HSC70 cochaperone (SGT) 99.7 1.9E-16 6.4E-21 138.0 10.9 126 17-165 6-133 (164)
12 3gyz_A Chaperone protein IPGC; 99.7 1.2E-16 4E-21 137.8 8.5 106 19-147 33-138 (151)
13 2vgx_A Chaperone SYCD; alterna 99.6 3.4E-16 1.2E-20 134.4 9.7 124 19-165 18-141 (148)
14 2xcb_A PCRH, regulatory protei 99.6 5.1E-16 1.7E-20 132.0 8.9 123 20-165 16-138 (142)
15 4ga2_A E3 SUMO-protein ligase 99.6 4E-16 1.4E-20 134.2 6.3 115 20-157 29-144 (150)
16 2kr4_A Ubiquitin conjugation f 99.6 1.1E-15 3.7E-20 117.5 5.5 73 173-247 10-82 (85)
17 1hxi_A PEX5, peroxisome target 99.6 4.1E-15 1.4E-19 122.9 8.8 103 23-148 18-120 (121)
18 1zu2_A Mitochondrial import re 99.6 5.9E-15 2E-19 126.2 8.2 115 34-161 14-139 (158)
19 2fbn_A 70 kDa peptidylprolyl i 99.5 1.9E-14 6.5E-19 129.3 11.4 126 17-165 33-174 (198)
20 3q49_B STIP1 homology and U bo 99.5 6.5E-15 2.2E-19 123.4 7.7 121 20-163 7-132 (137)
21 1elw_A TPR1-domain of HOP; HOP 99.5 2.3E-14 7.8E-19 115.9 10.6 115 21-158 3-117 (118)
22 2kre_A Ubiquitin conjugation f 99.5 1.5E-15 5.2E-20 120.1 3.2 71 172-244 24-94 (100)
23 1t1h_A Gspef-atpub14, armadill 99.5 4E-15 1.4E-19 112.8 5.0 69 173-243 4-73 (78)
24 2lni_A Stress-induced-phosphop 99.5 1.8E-14 6.3E-19 119.3 8.8 121 16-159 10-130 (133)
25 3urz_A Uncharacterized protein 99.5 9.7E-15 3.3E-19 132.6 7.3 114 21-157 3-132 (208)
26 1wgm_A Ubiquitin conjugation f 99.5 1.2E-14 4.2E-19 114.5 6.3 71 172-244 17-88 (98)
27 2pl2_A Hypothetical conserved 99.5 3.6E-14 1.2E-18 129.7 10.3 120 20-162 3-133 (217)
28 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 2.5E-14 8.5E-19 146.1 10.2 124 18-164 264-402 (457)
29 1p5q_A FKBP52, FK506-binding p 99.5 3.4E-14 1.1E-18 139.1 10.2 124 18-164 143-281 (336)
30 3fl2_A E3 ubiquitin-protein li 99.5 5.4E-15 1.8E-19 122.7 3.9 71 176-247 51-122 (124)
31 4gyw_A UDP-N-acetylglucosamine 99.5 2.7E-14 9.3E-19 153.1 9.7 117 20-159 7-123 (723)
32 4ga2_A E3 SUMO-protein ligase 99.5 6.7E-15 2.3E-19 126.5 4.0 111 28-161 3-113 (150)
33 2dba_A Smooth muscle cell asso 99.5 5.3E-14 1.8E-18 119.0 9.4 118 18-158 24-144 (148)
34 2xev_A YBGF; tetratricopeptide 99.5 5.8E-14 2E-18 116.2 8.0 114 24-160 4-123 (129)
35 1ihg_A Cyclophilin 40; ppiase 99.5 4.3E-14 1.5E-18 140.2 8.1 126 17-165 218-359 (370)
36 2vyi_A SGTA protein; chaperone 99.5 1.4E-13 4.9E-18 113.2 10.0 123 17-162 7-129 (131)
37 3ztg_A E3 ubiquitin-protein li 99.5 4.4E-14 1.5E-18 110.7 5.9 72 171-243 7-81 (92)
38 1a17_A Serine/threonine protei 99.5 2.2E-13 7.5E-18 117.5 10.6 118 16-156 7-124 (166)
39 1elr_A TPR2A-domain of HOP; HO 99.5 1.7E-13 5.9E-18 112.8 9.5 119 21-163 3-128 (131)
40 3l11_A E3 ubiquitin-protein li 99.5 2.2E-14 7.5E-19 117.4 3.8 82 172-253 10-97 (115)
41 4gyw_A UDP-N-acetylglucosamine 99.5 9.8E-14 3.4E-18 148.7 9.3 117 21-160 42-158 (723)
42 1z6u_A NP95-like ring finger p 99.5 2.6E-14 8.9E-19 122.1 3.8 72 176-248 77-149 (150)
43 2if4_A ATFKBP42; FKBP-like, al 99.4 4.2E-14 1.4E-18 138.5 5.1 122 17-161 174-312 (338)
44 2f42_A STIP1 homology and U-bo 99.4 9.5E-14 3.3E-18 120.7 6.5 70 171-242 100-170 (179)
45 4ayc_A E3 ubiquitin-protein li 99.4 2.6E-14 8.9E-19 120.8 2.5 74 176-250 52-125 (138)
46 2pl2_A Hypothetical conserved 99.4 4.1E-13 1.4E-17 122.6 10.3 117 21-161 38-165 (217)
47 3urz_A Uncharacterized protein 99.4 8.4E-13 2.9E-17 119.7 12.3 106 28-157 60-200 (208)
48 2h6f_A Protein farnesyltransfe 99.4 1.4E-13 4.7E-18 137.0 7.2 118 20-160 95-213 (382)
49 2ckl_A Polycomb group ring fin 99.4 1.3E-13 4.6E-18 111.3 5.6 74 175-248 13-89 (108)
50 2h6f_A Protein farnesyltransfe 99.4 2.1E-13 7.3E-18 135.6 7.9 118 20-160 129-247 (382)
51 4i17_A Hypothetical protein; T 99.4 6.4E-13 2.2E-17 121.7 9.7 106 22-150 7-113 (228)
52 3k9i_A BH0479 protein; putativ 99.4 6.6E-14 2.3E-18 114.6 2.4 101 34-157 2-105 (117)
53 3vtx_A MAMA; tetratricopeptide 99.4 8.4E-13 2.9E-17 116.5 9.5 115 21-158 4-118 (184)
54 4i17_A Hypothetical protein; T 99.4 7.8E-13 2.7E-17 121.1 9.4 117 21-160 75-227 (228)
55 1na0_A Designed protein CTPR3; 99.4 1.4E-12 4.8E-17 106.2 9.7 115 21-158 8-122 (125)
56 3vtx_A MAMA; tetratricopeptide 99.4 3.1E-13 1.1E-17 119.4 5.1 115 21-158 38-152 (184)
57 2y43_A E3 ubiquitin-protein li 99.4 2.8E-13 9.7E-18 107.5 4.0 65 176-242 21-86 (99)
58 2yu4_A E3 SUMO-protein ligase 99.3 2.8E-13 9.6E-18 106.2 3.3 68 175-244 5-82 (94)
59 2kck_A TPR repeat; tetratricop 99.3 4.8E-13 1.6E-17 107.0 4.7 103 22-147 6-111 (112)
60 2csy_A Zinc finger protein 183 99.3 5.2E-13 1.8E-17 101.8 4.2 61 172-235 10-70 (81)
61 2egp_A Tripartite motif-contai 99.3 1E-13 3.4E-18 105.3 0.2 64 172-237 7-77 (79)
62 3lrq_A E3 ubiquitin-protein li 99.3 4.2E-13 1.4E-17 106.6 3.8 65 175-241 20-86 (100)
63 1wao_1 Serine/threonine protei 99.3 4E-13 1.4E-17 137.8 4.0 116 20-158 4-119 (477)
64 3gyz_A Chaperone protein IPGC; 99.3 3.1E-13 1.1E-17 116.2 2.6 105 36-163 16-120 (151)
65 2e2e_A Formate-dependent nitri 99.3 3.6E-12 1.2E-16 111.8 9.6 118 21-159 43-161 (177)
66 2l6j_A TPR repeat-containing p 99.3 9.5E-13 3.2E-17 105.6 3.9 96 21-139 3-104 (111)
67 2ecw_A Tripartite motif-contai 99.3 5.8E-13 2E-17 102.6 1.9 65 171-237 13-83 (85)
68 2pzi_A Probable serine/threoni 99.3 3.7E-12 1.3E-16 136.5 8.2 110 22-155 433-542 (681)
69 2yur_A Retinoblastoma-binding 99.3 2.7E-12 9.2E-17 95.9 4.9 52 171-222 9-63 (74)
70 2ckl_B Ubiquitin ligase protei 99.3 1.6E-12 5.5E-17 113.4 3.9 71 173-244 50-122 (165)
71 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1E-11 3.5E-16 112.0 9.4 105 21-148 36-156 (213)
72 3qky_A Outer membrane assembly 99.3 1.8E-11 6E-16 114.6 10.8 114 20-156 13-140 (261)
73 2djb_A Polycomb group ring fin 99.3 5.3E-12 1.8E-16 93.8 5.6 54 170-223 8-62 (72)
74 2ecv_A Tripartite motif-contai 99.3 9.2E-13 3.1E-17 101.4 1.2 64 172-237 14-83 (85)
75 4abn_A Tetratricopeptide repea 99.2 1.1E-11 3.9E-16 126.9 9.5 120 22-164 170-309 (474)
76 3uq3_A Heat shock protein STI1 99.2 8.8E-12 3E-16 115.2 7.7 114 20-156 137-256 (258)
77 1jm7_B BARD1, BRCA1-associated 99.2 2.3E-12 7.9E-17 105.5 3.2 63 176-242 21-84 (117)
78 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.6E-11 8.9E-16 109.3 10.1 102 20-147 4-105 (213)
79 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.4E-11 1.2E-15 110.3 10.8 115 21-158 3-141 (225)
80 1xnf_A Lipoprotein NLPI; TPR, 99.2 2.3E-11 7.8E-16 113.8 9.8 110 19-151 40-149 (275)
81 1jm7_A BRCA1, breast cancer ty 99.2 4.1E-12 1.4E-16 103.3 3.9 66 176-243 20-88 (112)
82 2fo7_A Synthetic consensus TPR 99.2 3.1E-11 1.1E-15 99.2 9.1 114 23-159 2-115 (136)
83 2r5s_A Uncharacterized protein 99.2 3.5E-12 1.2E-16 112.2 3.5 135 23-161 7-158 (176)
84 3ieg_A DNAJ homolog subfamily 99.2 3.6E-11 1.2E-15 116.5 10.9 119 24-165 236-358 (359)
85 2pzi_A Probable serine/threoni 99.2 5.3E-12 1.8E-16 135.2 5.3 113 21-157 466-578 (681)
86 2vsy_A XCC0866; transferase, g 99.2 2.4E-11 8.4E-16 127.1 10.1 118 20-160 21-138 (568)
87 2d8t_A Dactylidin, ring finger 99.2 6.6E-12 2.3E-16 93.0 4.1 51 172-222 10-60 (71)
88 2ecy_A TNF receptor-associated 99.2 8.2E-12 2.8E-16 91.0 4.2 51 172-222 10-61 (66)
89 2ysl_A Tripartite motif-contai 99.2 1.4E-11 4.9E-16 91.7 5.5 51 172-222 15-68 (73)
90 3qou_A Protein YBBN; thioredox 99.2 2.5E-11 8.7E-16 115.7 8.3 138 21-162 116-270 (287)
91 3hct_A TNF receptor-associated 99.2 6.9E-12 2.4E-16 102.8 3.7 67 172-240 13-80 (118)
92 3qky_A Outer membrane assembly 99.2 6.4E-11 2.2E-15 110.8 10.7 120 21-163 88-248 (261)
93 2kat_A Uncharacterized protein 99.2 1.4E-11 4.9E-16 100.0 5.3 86 39-147 2-87 (115)
94 3as5_A MAMA; tetratricopeptide 99.2 6.4E-11 2.2E-15 103.2 9.8 109 23-154 43-151 (186)
95 3as5_A MAMA; tetratricopeptide 99.2 5.3E-11 1.8E-15 103.7 9.2 118 21-161 7-124 (186)
96 3ieg_A DNAJ homolog subfamily 99.2 5.3E-11 1.8E-15 115.3 10.1 113 21-156 2-117 (359)
97 4abn_A Tetratricopeptide repea 99.2 3.7E-11 1.3E-15 123.1 9.3 118 22-163 137-274 (474)
98 4gco_A Protein STI-1; structur 99.2 1E-11 3.4E-16 103.2 4.1 95 46-163 3-97 (126)
99 2kc7_A BFR218_protein; tetratr 99.2 3.4E-11 1.2E-15 94.7 6.4 92 26-148 4-96 (99)
100 3u4t_A TPR repeat-containing p 99.2 4.4E-11 1.5E-15 111.9 8.2 117 22-162 3-123 (272)
101 2vgx_A Chaperone SYCD; alterna 99.2 7.6E-12 2.6E-16 107.0 2.7 100 40-162 5-104 (148)
102 2q7f_A YRRB protein; TPR, prot 99.2 4E-11 1.4E-15 109.9 7.4 117 21-160 90-206 (243)
103 2ysj_A Tripartite motif-contai 99.2 2.8E-11 9.7E-16 87.3 4.9 47 171-217 14-63 (63)
104 3ng2_A RNF4, snurf, ring finge 99.2 1.7E-11 5.7E-16 90.8 3.7 49 174-222 7-62 (71)
105 2ct2_A Tripartite motif protei 99.1 1.5E-11 5.3E-16 95.2 3.6 53 171-223 9-68 (88)
106 4eqf_A PEX5-related protein; a 99.1 5E-11 1.7E-15 116.8 7.7 102 22-146 213-314 (365)
107 1fch_A Peroxisomal targeting s 99.1 7E-11 2.4E-15 115.5 8.7 120 21-163 216-346 (368)
108 2gw1_A Mitochondrial precursor 99.1 9.9E-11 3.4E-15 119.7 10.1 108 18-149 2-109 (514)
109 3htk_C E3 SUMO-protein ligase 99.1 2.5E-11 8.5E-16 110.4 4.8 67 173-241 177-248 (267)
110 1w3b_A UDP-N-acetylglucosamine 99.1 7E-11 2.4E-15 116.9 8.6 117 21-160 236-352 (388)
111 1w3b_A UDP-N-acetylglucosamine 99.1 1.6E-10 5.4E-15 114.4 11.0 118 21-161 202-319 (388)
112 3uq3_A Heat shock protein STI1 99.1 7.8E-11 2.7E-15 108.7 8.0 118 22-162 79-222 (258)
113 3u4t_A TPR repeat-containing p 99.1 2.5E-10 8.6E-15 106.6 11.5 109 22-154 37-149 (272)
114 1rmd_A RAG1; V(D)J recombinati 99.1 3E-11 1E-15 98.8 4.0 65 174-239 20-85 (116)
115 2q7f_A YRRB protein; TPR, prot 99.1 1.6E-10 5.4E-15 105.8 9.4 110 21-153 22-131 (243)
116 3knv_A TNF receptor-associated 99.1 2.2E-11 7.6E-16 102.7 3.2 50 173-222 27-77 (141)
117 3hym_B Cell division cycle pro 99.1 1.9E-10 6.6E-15 110.2 10.3 114 21-157 192-314 (330)
118 2fo7_A Synthetic consensus TPR 99.1 1.1E-10 3.8E-15 95.8 7.4 102 22-146 35-136 (136)
119 2y4t_A DNAJ homolog subfamily 99.1 1.7E-10 5.8E-15 116.1 10.0 115 17-154 21-138 (450)
120 2vq2_A PILW, putative fimbrial 99.1 1.8E-10 6E-15 104.0 9.1 116 20-158 6-124 (225)
121 2ea6_A Ring finger protein 4; 99.1 3.7E-11 1.3E-15 88.3 3.7 50 173-222 11-67 (69)
122 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.7E-10 9.4E-15 104.2 10.0 122 22-149 41-183 (225)
123 2ho1_A Type 4 fimbrial biogene 99.1 1.9E-10 6.3E-15 106.3 8.7 116 21-159 36-153 (252)
124 3hym_B Cell division cycle pro 99.1 3.8E-10 1.3E-14 108.1 11.1 115 22-159 90-205 (330)
125 2y4t_A DNAJ homolog subfamily 99.1 2.5E-10 8.5E-15 114.9 10.2 118 24-164 259-380 (450)
126 4eqf_A PEX5-related protein; a 99.1 1E-10 3.5E-15 114.6 7.1 113 27-162 182-296 (365)
127 3fp2_A TPR repeat-containing p 99.1 1.2E-10 4.2E-15 119.9 7.6 109 17-149 20-128 (537)
128 2ho1_A Type 4 fimbrial biogene 99.1 3.8E-10 1.3E-14 104.2 10.2 116 21-159 70-187 (252)
129 2e2e_A Formate-dependent nitri 99.1 1.7E-11 5.8E-16 107.5 0.7 112 27-161 15-129 (177)
130 2ecj_A Tripartite motif-contai 99.1 8.4E-11 2.9E-15 83.2 4.2 46 172-217 10-58 (58)
131 1bor_A Transcription factor PM 99.1 2.6E-11 8.9E-16 85.0 1.5 47 174-223 3-49 (56)
132 2xcb_A PCRH, regulatory protei 99.1 5.9E-11 2E-15 100.4 3.8 97 43-162 5-101 (142)
133 1na3_A Designed protein CTPR2; 99.1 3.5E-10 1.2E-14 86.9 7.7 85 20-127 7-91 (91)
134 1fch_A Peroxisomal targeting s 99.1 2.9E-10 9.8E-15 111.1 9.0 107 22-151 64-170 (368)
135 2xeu_A Ring finger protein 4; 99.1 5.3E-11 1.8E-15 86.1 2.7 47 176-222 2-55 (64)
136 1iym_A EL5; ring-H2 finger, ub 99.1 9E-11 3.1E-15 82.1 3.7 47 175-221 3-53 (55)
137 2vq2_A PILW, putative fimbrial 99.1 3.6E-10 1.2E-14 101.9 8.8 118 22-162 42-162 (225)
138 2ecn_A Ring finger protein 141 99.0 1.1E-10 3.8E-15 86.1 4.2 51 172-223 10-60 (70)
139 1g25_A CDK-activating kinase a 99.0 8.5E-11 2.9E-15 85.3 3.4 47 176-222 2-54 (65)
140 1chc_A Equine herpes virus-1 r 99.0 6E-11 2E-15 87.0 2.4 47 176-222 4-51 (68)
141 3cv0_A Peroxisome targeting si 99.0 3E-10 1E-14 108.7 8.0 118 22-162 172-301 (327)
142 2kiz_A E3 ubiquitin-protein li 99.0 1.5E-10 5.2E-15 85.0 4.5 50 173-222 10-62 (69)
143 3mkr_A Coatomer subunit epsilo 99.0 6.4E-10 2.2E-14 106.2 10.1 113 22-159 130-246 (291)
144 1xnf_A Lipoprotein NLPI; TPR, 99.0 8.1E-10 2.8E-14 103.1 10.6 105 21-148 76-250 (275)
145 3mkr_A Coatomer subunit epsilo 99.0 3.6E-10 1.2E-14 108.0 8.0 98 33-153 177-275 (291)
146 2ect_A Ring finger protein 126 99.0 1.7E-10 5.8E-15 87.0 4.5 52 172-223 10-64 (78)
147 3cv0_A Peroxisome targeting si 99.0 3.6E-10 1.2E-14 108.1 7.9 111 20-153 19-129 (327)
148 1p5q_A FKBP52, FK506-binding p 99.0 5.6E-10 1.9E-14 108.9 9.2 97 22-141 196-293 (336)
149 2ecm_A Ring finger and CHY zin 99.0 1.2E-10 4.1E-15 81.4 2.8 46 176-221 4-53 (55)
150 3hcs_A TNF receptor-associated 99.0 1.5E-10 5.2E-15 101.3 3.7 67 172-240 13-80 (170)
151 1wao_1 Serine/threonine protei 99.0 4.3E-10 1.5E-14 115.2 7.6 105 21-148 39-156 (477)
152 2l0b_A E3 ubiquitin-protein li 99.0 2.1E-10 7E-15 89.2 3.9 49 174-222 37-88 (91)
153 2vsy_A XCC0866; transferase, g 99.0 6.1E-10 2.1E-14 116.5 8.8 107 21-150 56-165 (568)
154 1qqe_A Vesicular transport pro 99.0 4.5E-10 1.5E-14 107.2 7.0 106 22-150 117-236 (292)
155 2ep4_A Ring finger protein 24; 99.0 2E-10 6.9E-15 85.6 3.0 52 171-222 9-63 (74)
156 1x4j_A Ring finger protein 38; 99.0 2.2E-10 7.4E-15 85.7 3.1 49 174-222 20-71 (75)
157 3ma5_A Tetratricopeptide repea 99.0 1.7E-10 5.8E-15 91.4 2.6 76 51-149 2-77 (100)
158 1a17_A Serine/threonine protei 99.0 1.3E-09 4.6E-14 93.4 8.4 99 21-142 46-146 (166)
159 1e4u_A Transcriptional repress 99.0 4.2E-10 1.5E-14 84.3 4.3 50 174-223 8-62 (78)
160 1qqe_A Vesicular transport pro 98.9 9.3E-10 3.2E-14 105.0 7.5 106 21-149 76-194 (292)
161 4g1t_A Interferon-induced prot 98.9 1.7E-09 5.7E-14 109.7 9.5 117 22-161 51-186 (472)
162 2c2l_A CHIP, carboxy terminus 98.9 2.1E-09 7.1E-14 102.1 8.3 107 21-152 37-174 (281)
163 2ond_A Cleavage stimulation fa 98.9 3.5E-09 1.2E-13 101.7 9.8 115 22-159 99-215 (308)
164 2bay_A PRE-mRNA splicing facto 98.9 3.3E-10 1.1E-14 80.5 1.8 53 177-231 3-56 (61)
165 3fp2_A TPR repeat-containing p 98.9 1.5E-09 5.2E-14 111.6 7.5 110 22-155 243-352 (537)
166 2xpi_A Anaphase-promoting comp 98.9 1.8E-09 6.3E-14 112.8 8.2 112 22-156 475-593 (597)
167 2if4_A ATFKBP42; FKBP-like, al 98.9 5.7E-10 2E-14 109.0 3.6 104 23-149 231-335 (338)
168 2ond_A Cleavage stimulation fa 98.9 7E-09 2.4E-13 99.5 11.1 114 20-156 48-177 (308)
169 1pc2_A Mitochondria fission pr 98.9 2.3E-09 7.7E-14 90.6 6.2 104 36-162 12-120 (152)
170 2gw1_A Mitochondrial precursor 98.9 2.2E-09 7.5E-14 109.6 7.3 114 22-158 372-494 (514)
171 2fbn_A 70 kDa peptidylprolyl i 98.9 4.7E-09 1.6E-13 93.7 8.5 98 22-142 88-186 (198)
172 4ap4_A E3 ubiquitin ligase RNF 98.9 7.2E-10 2.5E-14 92.7 2.9 49 175-223 5-60 (133)
173 3rkv_A Putative peptidylprolyl 98.9 4.8E-09 1.6E-13 90.4 8.0 92 18-132 59-151 (162)
174 1dce_A Protein (RAB geranylger 98.8 5.8E-09 2E-13 108.9 9.8 118 20-160 61-191 (567)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 4.9E-09 1.7E-13 106.7 9.0 97 22-141 317-414 (457)
176 1v87_A Deltex protein 2; ring- 98.8 2E-09 6.9E-14 87.5 4.8 46 177-222 25-93 (114)
177 2xpi_A Anaphase-promoting comp 98.8 6.6E-09 2.3E-13 108.5 10.0 115 21-158 372-486 (597)
178 4gcn_A Protein STI-1; structur 98.8 7.1E-10 2.4E-14 91.9 1.9 71 56-149 8-78 (127)
179 3edt_B KLC 2, kinesin light ch 98.8 1.5E-09 5E-14 101.3 4.2 119 19-160 40-182 (283)
180 3upv_A Heat shock protein STI1 98.8 1.8E-09 6.3E-14 88.7 4.4 86 54-162 2-87 (126)
181 4ic3_A E3 ubiquitin-protein li 98.8 7.5E-10 2.6E-14 82.4 1.7 43 176-222 23-66 (74)
182 2kck_A TPR repeat; tetratricop 98.8 4.1E-09 1.4E-13 83.6 6.2 87 51-160 1-89 (112)
183 1na3_A Designed protein CTPR2; 98.8 2.3E-09 7.8E-14 82.2 4.4 83 54-159 7-89 (91)
184 1dce_A Protein (RAB geranylger 98.8 6.3E-09 2.2E-13 108.6 8.9 119 19-160 104-239 (567)
185 2l6j_A TPR repeat-containing p 98.8 5.9E-09 2E-13 83.0 6.6 84 56-162 4-93 (111)
186 3k9i_A BH0479 protein; putativ 98.8 5.5E-09 1.9E-13 84.9 6.0 90 18-141 23-112 (117)
187 1ihg_A Cyclophilin 40; ppiase 98.8 1.6E-08 5.3E-13 100.0 10.2 94 19-135 270-363 (370)
188 3bee_A Putative YFRE protein; 98.8 9.9E-09 3.4E-13 80.0 7.0 86 52-157 2-87 (93)
189 2ecl_A Ring-box protein 2; RNF 98.8 3E-09 1E-13 80.6 3.9 47 176-222 14-75 (81)
190 2vyi_A SGTA protein; chaperone 98.8 7.8E-09 2.7E-13 84.2 6.5 86 21-129 45-130 (131)
191 1hxi_A PEX5, peroxisome target 98.8 7.6E-09 2.6E-13 84.8 6.3 83 57-162 18-100 (121)
192 4a1s_A PINS, partner of inscut 98.8 5.6E-09 1.9E-13 103.7 6.6 121 19-162 45-181 (411)
193 1zu2_A Mitochondrial import re 98.8 1.1E-08 3.7E-13 87.3 6.8 72 20-114 34-126 (158)
194 2lni_A Stress-induced-phosphop 98.8 1.2E-08 3.9E-13 83.8 6.7 85 21-128 49-133 (133)
195 3sz7_A HSC70 cochaperone (SGT) 98.8 1.3E-08 4.4E-13 87.8 7.3 82 21-125 44-125 (164)
196 2y1n_A E3 ubiquitin-protein li 98.7 3.4E-09 1.2E-13 102.8 3.8 45 178-222 333-378 (389)
197 3edt_B KLC 2, kinesin light ch 98.7 8.9E-09 3E-13 95.9 6.6 101 19-142 82-198 (283)
198 3ma5_A Tetratricopeptide repea 98.7 1.6E-08 5.5E-13 79.8 7.0 85 20-127 5-91 (100)
199 2vje_A E3 ubiquitin-protein li 98.7 3.1E-09 1.1E-13 76.5 2.6 48 175-222 6-56 (64)
200 2vje_B MDM4 protein; proto-onc 98.7 3.4E-09 1.2E-13 76.0 2.7 48 175-222 5-55 (63)
201 3ro2_A PINS homolog, G-protein 98.7 1.2E-08 4.1E-13 97.2 7.1 104 21-147 4-117 (338)
202 2ifu_A Gamma-SNAP; membrane fu 98.7 9.8E-09 3.4E-13 98.5 6.4 103 22-149 116-230 (307)
203 3dss_A Geranylgeranyl transfer 98.7 3.1E-08 1.1E-12 95.6 9.6 115 19-156 105-236 (331)
204 3dra_A Protein farnesyltransfe 98.7 1.9E-08 6.4E-13 96.4 8.1 119 20-161 101-234 (306)
205 2kc7_A BFR218_protein; tetratr 98.7 2.1E-08 7.2E-13 78.4 7.0 69 59-150 3-72 (99)
206 2r5s_A Uncharacterized protein 98.7 1.8E-08 6.1E-13 88.1 7.0 82 37-141 89-172 (176)
207 3q49_B STIP1 homology and U bo 98.7 1.4E-08 4.6E-13 84.3 5.8 89 50-161 3-91 (137)
208 3nf1_A KLC 1, kinesin light ch 98.7 9.5E-09 3.2E-13 97.4 5.4 104 19-145 150-310 (311)
209 2ecg_A Baculoviral IAP repeat- 98.7 3.1E-09 1.1E-13 79.2 1.5 43 176-222 24-67 (75)
210 3ulq_A Response regulator aspa 98.7 1.6E-08 5.6E-13 99.8 7.2 121 18-161 139-278 (383)
211 3u3w_A Transcriptional activat 98.7 9.6E-09 3.3E-13 97.8 5.0 102 20-144 153-268 (293)
212 3ro3_A PINS homolog, G-protein 98.7 1.2E-08 4.2E-13 86.2 5.0 103 19-144 6-120 (164)
213 4g1t_A Interferon-induced prot 98.7 3E-08 1E-12 100.4 8.7 125 21-149 246-370 (472)
214 1ouv_A Conserved hypothetical 98.7 3.9E-08 1.3E-12 92.1 8.7 110 20-158 4-121 (273)
215 3dra_A Protein farnesyltransfe 98.7 3.2E-08 1.1E-12 94.8 7.9 116 22-160 67-193 (306)
216 3sf4_A G-protein-signaling mod 98.7 1.6E-08 5.3E-13 99.8 5.8 104 20-146 7-120 (406)
217 3u3w_A Transcriptional activat 98.7 3.3E-08 1.1E-12 94.1 7.8 100 24-146 117-229 (293)
218 3q7a_A Farnesyltransferase alp 98.7 6.2E-08 2.1E-12 94.0 9.5 127 20-161 121-256 (349)
219 4f3v_A ESX-1 secretion system 98.7 3.4E-08 1.2E-12 92.8 7.4 109 24-156 137-250 (282)
220 2hr2_A Hypothetical protein; a 98.6 1.5E-08 5.3E-13 86.5 4.1 79 21-122 56-145 (159)
221 3nf1_A KLC 1, kinesin light ch 98.6 1.9E-08 6.3E-13 95.3 5.1 105 16-143 21-141 (311)
222 2qfc_A PLCR protein; TPR, HTH, 98.6 2.4E-08 8.3E-13 94.9 5.9 100 21-143 154-267 (293)
223 3qou_A Protein YBBN; thioredox 98.6 2.4E-08 8.1E-13 95.0 5.7 92 27-141 190-283 (287)
224 3q7a_A Farnesyltransferase alp 98.6 7.6E-08 2.6E-12 93.3 9.3 97 34-153 66-165 (349)
225 3dpl_R Ring-box protein 1; ubi 98.6 1.7E-08 5.9E-13 80.1 3.8 46 176-221 36-99 (106)
226 3ulq_A Response regulator aspa 98.6 3.7E-08 1.3E-12 97.2 6.4 104 19-145 181-296 (383)
227 2kat_A Uncharacterized protein 98.6 1.2E-07 4E-12 76.4 8.3 87 21-130 18-106 (115)
228 1na0_A Designed protein CTPR3; 98.6 8.9E-08 3.1E-12 77.1 7.6 83 22-127 43-125 (125)
229 4ap4_A E3 ubiquitin ligase RNF 98.6 1.2E-08 3.9E-13 85.3 2.2 49 174-222 69-124 (133)
230 3ro3_A PINS homolog, G-protein 98.6 3.3E-08 1.1E-12 83.5 5.1 100 22-144 49-160 (164)
231 2qfc_A PLCR protein; TPR, HTH, 98.6 7.4E-08 2.5E-12 91.6 8.0 100 22-144 115-227 (293)
232 3dss_A Geranylgeranyl transfer 98.6 9.6E-08 3.3E-12 92.1 8.6 118 20-160 62-192 (331)
233 3gw4_A Uncharacterized protein 98.6 3.5E-08 1.2E-12 87.5 5.2 102 20-144 24-138 (203)
234 3q15_A PSP28, response regulat 98.6 1E-07 3.6E-12 93.9 9.0 103 20-145 180-293 (378)
235 2ifu_A Gamma-SNAP; membrane fu 98.6 2.1E-08 7.2E-13 96.2 3.7 101 22-146 76-188 (307)
236 2ea5_A Cell growth regulator w 98.6 3.4E-08 1.2E-12 71.8 3.8 47 172-222 10-57 (68)
237 1elw_A TPR1-domain of HOP; HOP 98.6 1.3E-07 4.3E-12 75.4 7.4 80 21-123 37-116 (118)
238 3n71_A Histone lysine methyltr 98.5 7.8E-08 2.7E-12 98.2 7.1 114 21-157 308-442 (490)
239 2yho_A E3 ubiquitin-protein li 98.5 1.5E-08 5.2E-13 76.1 1.4 43 176-222 17-60 (79)
240 3sf4_A G-protein-signaling mod 98.5 5.9E-08 2E-12 95.5 5.4 103 21-146 186-300 (406)
241 3q15_A PSP28, response regulat 98.5 9.9E-08 3.4E-12 94.1 7.0 122 18-162 137-276 (378)
242 3qww_A SET and MYND domain-con 98.5 6.6E-08 2.3E-12 97.2 5.7 111 24-157 300-431 (433)
243 3rjv_A Putative SEL1 repeat pr 98.5 8.7E-08 3E-12 86.7 5.9 110 20-157 16-135 (212)
244 2dba_A Smooth muscle cell asso 98.5 2E-07 7E-12 77.8 7.5 80 22-124 65-144 (148)
245 1ouv_A Conserved hypothetical 98.5 2.3E-07 7.9E-12 86.7 8.5 106 21-155 37-154 (273)
246 3rjv_A Putative SEL1 repeat pr 98.5 9.2E-08 3.1E-12 86.5 5.3 110 21-157 49-172 (212)
247 2ooe_A Cleavage stimulation fa 98.5 2.9E-07 9.9E-12 95.1 9.4 118 21-161 320-439 (530)
248 4a1s_A PINS, partner of inscut 98.5 5.2E-08 1.8E-12 96.6 3.6 103 21-146 222-336 (411)
249 3qwp_A SET and MYND domain-con 98.5 2.7E-07 9.3E-12 92.7 8.8 119 20-161 285-424 (429)
250 2xev_A YBGF; tetratricopeptide 98.5 2.9E-07 9.9E-12 75.2 7.4 80 22-124 39-121 (129)
251 3ro2_A PINS homolog, G-protein 98.5 9.3E-08 3.2E-12 91.0 4.7 103 21-146 182-296 (338)
252 1wim_A KIAA0161 protein; ring 98.4 3E-08 1E-12 77.4 0.8 45 176-220 4-61 (94)
253 3ly7_A Transcriptional activat 98.4 3.5E-07 1.2E-11 88.7 8.1 124 20-147 194-344 (372)
254 2v5f_A Prolyl 4-hydroxylase su 98.4 5.1E-07 1.8E-11 71.7 7.4 77 21-120 4-87 (104)
255 2ooe_A Cleavage stimulation fa 98.4 1.1E-06 3.9E-11 90.6 11.6 107 21-150 271-393 (530)
256 3gw4_A Uncharacterized protein 98.4 1.8E-07 6.3E-12 82.7 4.6 104 19-145 63-179 (203)
257 4f3v_A ESX-1 secretion system 98.4 3.7E-07 1.3E-11 85.7 6.3 114 22-159 102-220 (282)
258 3t6p_A Baculoviral IAP repeat- 98.4 7.3E-08 2.5E-12 93.1 1.1 43 176-222 294-337 (345)
259 1nzn_A CGI-135 protein, fissio 98.3 5.8E-07 2E-11 73.1 6.1 110 33-162 12-123 (126)
260 4a0k_B E3 ubiquitin-protein li 98.3 6.3E-08 2.2E-12 78.0 0.1 45 177-221 48-110 (117)
261 1elr_A TPR2A-domain of HOP; HO 98.3 5.6E-07 1.9E-11 73.0 5.4 85 21-129 37-128 (131)
262 2v5f_A Prolyl 4-hydroxylase su 98.3 8.5E-07 2.9E-11 70.4 5.8 83 58-163 7-96 (104)
263 2d8s_A Cellular modulator of i 98.2 8.4E-07 2.9E-11 66.5 4.1 50 174-223 12-70 (80)
264 3m62_A Ubiquitin conjugation f 98.2 6.5E-07 2.2E-11 95.6 4.4 75 172-248 886-961 (968)
265 1klx_A Cysteine rich protein B 98.2 1.9E-06 6.6E-11 72.1 5.5 96 28-152 31-134 (138)
266 1hz4_A MALT regulatory protein 98.2 1.8E-06 6.2E-11 84.5 6.2 103 21-146 52-168 (373)
267 3bee_A Putative YFRE protein; 98.1 3.2E-06 1.1E-10 65.6 5.6 72 20-114 4-78 (93)
268 3u64_A Protein TP_0956; tetrat 98.1 1.8E-06 6E-11 80.5 4.3 104 20-146 150-273 (301)
269 3n71_A Histone lysine methyltr 98.0 3.3E-06 1.1E-10 86.2 5.5 105 14-141 343-463 (490)
270 1hz4_A MALT regulatory protein 98.0 6.4E-06 2.2E-10 80.5 7.3 102 20-144 12-124 (373)
271 2xm6_A Protein corresponding t 98.0 5E-06 1.7E-10 84.9 5.6 95 23-144 329-434 (490)
272 3e4b_A ALGK; tetratricopeptide 97.9 1.4E-05 4.7E-10 81.0 7.4 106 24-157 178-293 (452)
273 2ct0_A Non-SMC element 1 homol 97.9 2.4E-05 8.2E-10 57.2 6.3 49 175-223 13-64 (74)
274 3e4b_A ALGK; tetratricopeptide 97.9 2.8E-05 9.6E-10 78.6 8.7 101 26-158 217-329 (452)
275 3o48_A Mitochondria fission 1 97.9 4.3E-05 1.5E-09 62.2 7.9 88 55-162 39-127 (134)
276 2xm6_A Protein corresponding t 97.8 3.6E-05 1.2E-09 78.4 8.6 108 20-156 37-156 (490)
277 1y8m_A FIS1; mitochondria, unk 97.8 7E-05 2.4E-09 61.7 7.8 90 53-162 36-126 (144)
278 1klx_A Cysteine rich protein B 97.8 2.7E-05 9.2E-10 65.0 5.5 92 35-157 8-103 (138)
279 1pc2_A Mitochondria fission pr 97.7 3.1E-05 1.1E-09 65.2 5.1 79 22-123 32-115 (152)
280 3mv2_B Coatomer subunit epsilo 97.7 7.6E-05 2.6E-09 70.9 8.3 100 23-145 101-210 (310)
281 1xi4_A Clathrin heavy chain; a 97.7 6.8E-05 2.3E-09 83.5 9.0 105 22-157 1195-1324(1630)
282 1b89_A Protein (clathrin heavy 97.7 5.5E-05 1.9E-09 75.2 6.6 103 23-158 123-252 (449)
283 3mv2_B Coatomer subunit epsilo 97.6 0.00014 4.9E-09 69.0 7.7 100 27-154 181-294 (310)
284 3vk6_A E3 ubiquitin-protein li 97.5 4.6E-05 1.6E-09 58.0 3.3 44 179-222 3-48 (101)
285 3u64_A Protein TP_0956; tetrat 97.5 0.00026 8.8E-09 66.0 9.1 90 49-150 145-242 (301)
286 4b4t_Q 26S proteasome regulato 97.5 0.0002 6.8E-09 71.1 7.9 103 19-144 52-206 (434)
287 3ffl_A Anaphase-promoting comp 97.4 0.00022 7.5E-09 60.5 6.3 94 23-139 21-148 (167)
288 4b4t_Q 26S proteasome regulato 97.3 0.00022 7.5E-09 70.8 6.3 96 25-143 7-125 (434)
289 1xi4_A Clathrin heavy chain; a 97.2 0.0003 1E-08 78.5 5.7 65 53-145 1102-1166(1630)
290 3qwp_A SET and MYND domain-con 97.1 0.00049 1.7E-08 68.9 6.2 89 13-124 320-424 (429)
291 3k1l_B Fancl; UBC, ring, RWD, 97.1 0.00012 4.1E-09 68.9 1.4 49 175-223 306-373 (381)
292 1vyx_A ORF K3, K3RING; zinc-bi 97.1 0.00028 9.4E-09 49.4 2.9 47 176-222 5-58 (60)
293 3ly7_A Transcriptional activat 96.9 0.00089 3.1E-08 64.8 5.7 92 22-137 277-369 (372)
294 3qww_A SET and MYND domain-con 96.9 0.00048 1.6E-08 69.0 4.0 79 14-115 332-423 (433)
295 1b89_A Protein (clathrin heavy 96.9 0.0011 3.7E-08 65.9 6.3 109 21-157 147-292 (449)
296 4e6h_A MRNA 3'-END-processing 96.5 0.0064 2.2E-07 64.4 8.7 117 23-162 435-556 (679)
297 1nzn_A CGI-135 protein, fissio 96.4 0.0053 1.8E-07 49.7 5.9 78 23-123 36-118 (126)
298 2ff4_A Probable regulatory pro 96.2 0.015 5.2E-07 57.2 9.6 100 19-141 112-233 (388)
299 4h7y_A Dual specificity protei 95.8 0.072 2.5E-06 44.2 10.0 104 22-149 13-130 (161)
300 3o48_A Mitochondria fission 1 95.7 0.012 4.2E-07 47.7 5.0 78 25-125 43-124 (134)
301 3mv2_A Coatomer subunit alpha; 95.6 0.083 2.8E-06 49.6 10.9 175 19-219 111-311 (325)
302 4e6h_A MRNA 3'-END-processing 95.5 0.025 8.5E-07 59.9 8.0 97 23-142 344-463 (679)
303 2jun_A Midline-1; B-BOX, TRIM, 95.2 0.0061 2.1E-07 47.5 1.7 31 176-206 2-35 (101)
304 3ffl_A Anaphase-promoting comp 95.0 0.039 1.3E-06 46.7 6.1 79 21-123 62-165 (167)
305 3mkr_B Coatomer subunit alpha; 95.0 0.2 6.9E-06 47.0 11.5 177 21-220 101-303 (320)
306 1y8m_A FIS1; mitochondria, unk 94.9 0.062 2.1E-06 44.2 6.8 78 23-123 40-121 (144)
307 3nw0_A Non-structural maintena 94.2 0.047 1.6E-06 49.5 5.0 47 176-222 179-228 (238)
308 2uy1_A Cleavage stimulation fa 93.6 0.3 1E-05 49.4 10.2 134 22-157 213-364 (493)
309 1zbp_A Hypothetical protein VP 93.5 0.2 7E-06 45.8 7.8 64 29-115 4-67 (273)
310 2uy1_A Cleavage stimulation fa 93.5 0.45 1.5E-05 48.2 11.4 110 23-160 287-397 (493)
311 2ko5_A Ring finger protein Z; 93.0 0.059 2E-06 40.2 2.8 46 176-222 27-72 (99)
312 4gns_B Protein CSD3, chitin bi 92.7 0.17 5.9E-06 53.7 7.0 45 96-140 354-398 (754)
313 1ya0_A SMG-7 transcript varian 91.8 0.33 1.1E-05 49.1 7.5 79 24-125 154-232 (497)
314 4gns_B Protein CSD3, chitin bi 89.1 0.34 1.2E-05 51.4 5.0 51 22-72 337-387 (754)
315 4g26_A Pentatricopeptide repea 88.9 1.3 4.6E-05 44.7 9.2 99 22-145 105-209 (501)
316 3i2d_A E3 SUMO-protein ligase 88.3 0.24 8.3E-06 47.4 3.0 64 175-240 247-315 (371)
317 1ya0_A SMG-7 transcript varian 87.4 0.81 2.8E-05 46.2 6.3 64 96-159 169-232 (497)
318 4fo9_A E3 SUMO-protein ligase 86.5 0.36 1.2E-05 46.0 3.0 63 175-239 213-280 (360)
319 1zbp_A Hypothetical protein VP 85.4 0.74 2.5E-05 42.1 4.3 55 96-150 14-68 (273)
320 3kae_A CDC27, possible protein 84.3 2.5 8.7E-05 35.7 6.7 95 27-149 38-150 (242)
321 4b4t_R RPN7, 26S proteasome re 83.9 0.91 3.1E-05 45.0 4.7 96 24-142 133-237 (429)
322 2ff4_A Probable regulatory pro 81.2 1.4 4.8E-05 43.0 4.8 62 23-107 172-233 (388)
323 3mkq_B Coatomer subunit alpha; 81.1 8.6 0.00029 32.7 9.0 84 22-141 34-117 (177)
324 3txn_A 26S proteasome regulato 80.2 2.1 7.4E-05 41.7 5.7 92 27-141 104-209 (394)
325 2w2u_A Hypothetical P60 katani 79.4 1.8 6.1E-05 32.0 3.7 35 17-51 14-48 (83)
326 2v6y_A AAA family ATPase, P60 74.9 3.5 0.00012 30.3 4.2 34 18-51 7-40 (83)
327 4a5x_A MITD1, MIT domain-conta 74.8 3.8 0.00013 30.4 4.4 33 19-51 13-45 (86)
328 1wfd_A Hypothetical protein 15 73.6 5.5 0.00019 30.0 5.1 36 16-51 9-44 (93)
329 4g26_A Pentatricopeptide repea 71.9 7.3 0.00025 39.3 7.2 86 36-146 84-175 (501)
330 3ax2_A Mitochondrial import re 71.7 4.2 0.00015 29.0 3.8 34 25-58 20-53 (73)
331 1weo_A Cellulose synthase, cat 71.3 2.4 8.2E-05 31.2 2.4 45 177-221 16-68 (93)
332 2v6x_A Vacuolar protein sortin 71.1 4.5 0.00015 29.8 4.0 35 17-51 8-42 (85)
333 2cpt_A SKD1 protein, vacuolar 70.3 6.5 0.00022 31.0 5.0 35 17-51 13-47 (117)
334 3mkq_A Coatomer beta'-subunit; 69.3 11 0.00039 39.7 8.5 20 122-141 745-764 (814)
335 3mkq_A Coatomer beta'-subunit; 65.5 8.2 0.00028 40.8 6.4 36 32-72 662-697 (814)
336 4fhn_B Nucleoporin NUP120; pro 63.9 6.4 0.00022 44.1 5.3 90 25-137 845-962 (1139)
337 2crb_A Nuclear receptor bindin 62.8 15 0.00052 27.3 5.3 31 20-50 13-43 (97)
338 1m3v_A FLIN4, fusion of the LI 61.3 4 0.00014 32.4 2.2 47 176-222 31-80 (122)
339 4b4t_S RPN3, 26S proteasome re 60.2 7.9 0.00027 38.9 4.6 58 96-153 248-310 (523)
340 1qsa_A Protein (soluble lytic 59.7 12 0.0004 38.8 5.9 80 38-141 268-347 (618)
341 2gmg_A Hypothetical protein PF 59.6 2.2 7.4E-05 32.8 0.3 28 189-221 67-94 (105)
342 4h7y_A Dual specificity protei 59.4 14 0.00048 30.6 5.1 59 33-114 71-129 (161)
343 2vkj_A TM1634; membrane protei 59.3 12 0.00043 27.5 4.2 34 19-52 50-83 (106)
344 2cs3_A Protein C14ORF4, MY039 58.6 7.4 0.00025 28.0 2.9 36 174-209 12-51 (93)
345 3ax2_A Mitochondrial import re 58.6 8.4 0.00029 27.5 3.2 36 117-152 21-56 (73)
346 1om2_A Protein (mitochondrial 58.1 13 0.00044 28.0 4.3 33 23-55 21-53 (95)
347 4b4t_P 26S proteasome regulato 57.5 28 0.00096 34.3 8.2 98 22-142 137-247 (445)
348 2rpa_A Katanin P60 ATPase-cont 57.5 9 0.00031 27.7 3.3 30 22-51 12-41 (78)
349 3mkq_B Coatomer subunit alpha; 57.5 27 0.00092 29.6 6.9 52 27-106 10-61 (177)
350 2jne_A Hypothetical protein YF 57.3 0.9 3.1E-05 34.1 -2.1 41 177-222 32-72 (101)
351 2v6y_A AAA family ATPase, P60 56.6 14 0.00048 27.0 4.3 58 94-159 7-64 (83)
352 4a5x_A MITD1, MIT domain-conta 54.9 13 0.00044 27.5 3.9 49 89-147 9-57 (86)
353 3spa_A Mtrpol, DNA-directed RN 54.5 52 0.0018 36.2 9.9 95 23-142 128-230 (1134)
354 2cfu_A SDSA1; SDS-hydrolase, l 51.3 12 0.00041 39.1 4.5 51 22-72 449-499 (658)
355 2wpv_A GET4, UPF0363 protein Y 50.4 32 0.0011 32.1 6.8 46 94-139 115-160 (312)
356 2xjy_A Rhombotin-2; oncoprotei 49.6 7.7 0.00026 30.9 2.1 47 176-222 28-77 (131)
357 1rut_X Flinc4, fusion protein 48.3 6.1 0.00021 34.0 1.4 47 176-222 31-80 (188)
358 2jrp_A Putative cytoplasmic pr 48.2 1.4 4.9E-05 32.1 -2.2 39 178-221 3-41 (81)
359 2crb_A Nuclear receptor bindin 47.7 12 0.00042 27.8 2.6 28 113-140 15-42 (97)
360 2ynq_A ESSB; membrane protein, 47.6 43 0.0015 27.7 6.2 87 24-138 10-98 (161)
361 2lri_C Autoimmune regulator; Z 47.1 20 0.00067 24.9 3.6 45 176-221 11-60 (66)
362 3fyb_A Protein of unknown func 46.5 6.7 0.00023 29.4 1.1 12 198-209 41-52 (104)
363 2o35_A Hypothetical protein DU 46.5 6.7 0.00023 29.5 1.1 12 198-209 42-53 (105)
364 2w2u_A Hypothetical P60 katani 45.4 28 0.00095 25.4 4.4 46 95-148 16-61 (83)
365 1wfd_A Hypothetical protein 15 45.3 27 0.00094 26.0 4.5 48 92-147 9-56 (93)
366 4b4t_S RPN3, 26S proteasome re 44.5 87 0.003 31.4 9.2 102 18-148 266-379 (523)
367 1z60_A TFIIH basal transcripti 43.9 15 0.0005 25.0 2.4 39 179-217 17-58 (59)
368 3kae_A CDC27, possible protein 42.9 38 0.0013 28.7 5.2 72 20-114 60-149 (242)
369 4b4t_R RPN7, 26S proteasome re 42.5 35 0.0012 33.3 6.1 81 39-142 114-197 (429)
370 2xqn_T Testin, TESS; metal-bin 42.4 15 0.0005 29.0 2.7 45 176-222 29-74 (126)
371 3lpz_A GET4 (YOR164C homolog); 39.2 1E+02 0.0034 29.0 8.3 44 94-137 117-160 (336)
372 2dl1_A Spartin; SPG20, MIT, st 37.2 43 0.0015 26.1 4.5 34 17-50 17-50 (116)
373 2lbm_A Transcriptional regulat 37.0 27 0.00093 28.4 3.5 45 175-219 61-116 (142)
374 1zbd_B Rabphilin-3A; G protein 36.0 20 0.0007 28.8 2.6 30 176-205 54-88 (134)
375 2dl1_A Spartin; SPG20, MIT, st 36.0 75 0.0026 24.7 5.6 42 96-145 20-61 (116)
376 1om2_A Protein (mitochondrial 36.0 15 0.00051 27.7 1.6 34 117-150 24-57 (95)
377 2ijq_A Hypothetical protein; s 34.9 87 0.003 26.0 6.3 34 22-55 32-65 (161)
378 1wy6_A Hypothetical protein ST 34.2 1.2E+02 0.004 24.7 6.6 36 106-141 118-153 (172)
379 2yhe_A SEC-alkyl sulfatase; hy 39.8 8.8 0.0003 40.1 0.0 51 22-72 461-511 (668)
380 2jmo_A Parkin; IBR, E3 ligase, 32.5 4.7 0.00016 29.3 -1.6 14 194-207 55-68 (80)
381 3txn_A 26S proteasome regulato 31.1 1.2E+02 0.004 29.3 7.6 29 22-50 19-47 (394)
382 3t5x_A PCI domain-containing p 30.9 54 0.0018 28.3 4.7 39 18-56 10-48 (203)
383 3otn_A SUSD superfamily protei 30.4 1.1E+02 0.0038 30.2 7.5 86 56-141 116-225 (482)
384 3kez_A Putative sugar binding 29.6 1.2E+02 0.0039 29.9 7.5 86 56-141 117-224 (461)
385 4gq2_M Nucleoporin NUP120; bet 29.3 90 0.0031 34.0 7.1 95 29-150 817-935 (950)
386 3pwf_A Rubrerythrin; non heme 29.1 78 0.0027 26.5 5.2 8 213-220 155-162 (170)
387 3snx_A SUSD homolog, putative 29.1 1.2E+02 0.004 29.9 7.4 87 56-142 107-220 (460)
388 1wy6_A Hypothetical protein ST 28.8 1E+02 0.0034 25.1 5.4 64 23-109 91-155 (172)
389 2v6x_A Vacuolar protein sortin 28.8 58 0.002 23.6 3.9 46 94-147 9-54 (85)
390 2rgt_A Fusion of LIM/homeobox 28.5 38 0.0013 28.2 3.2 45 176-222 32-76 (169)
391 3eab_A Spastin; spastin, MIT, 28.5 41 0.0014 24.9 2.9 33 18-50 12-47 (89)
392 3vth_A Hydrogenase maturation 27.6 23 0.0008 37.5 2.0 50 173-222 107-194 (761)
393 3re2_A Predicted protein; meni 27.5 94 0.0032 29.5 5.7 45 98-142 276-325 (472)
394 3mjh_B Early endosome antigen 27.3 15 0.00051 21.9 0.2 13 178-190 6-18 (34)
395 1dvp_A HRS, hepatocyte growth 27.0 71 0.0024 27.9 4.8 29 177-205 161-193 (220)
396 1wil_A KIAA1045 protein; ring 26.7 65 0.0022 23.5 3.5 34 173-207 11-47 (89)
397 2l5u_A Chromodomain-helicase-D 26.6 42 0.0014 22.7 2.5 44 174-219 8-57 (61)
398 2cup_A Skeletal muscle LIM-pro 26.4 22 0.00074 26.7 1.1 45 176-222 32-77 (101)
399 2zet_C Melanophilin; complex, 26.1 35 0.0012 28.2 2.4 44 176-220 67-117 (153)
400 4g9i_A Hydrogenase maturation 26.1 25 0.00084 37.4 1.8 50 173-222 102-189 (772)
401 3zyq_A Hepatocyte growth facto 25.9 79 0.0027 27.8 4.9 30 177-206 164-197 (226)
402 3hdx_A SUSD homolog, SUSD supe 25.8 1.1E+02 0.0037 30.2 6.5 86 56-141 112-225 (478)
403 3u84_A Menin; MLL, JUND, ledgf 25.0 1.1E+02 0.0037 29.7 5.7 45 96-142 303-347 (550)
404 2jtn_A LIM domain-binding prot 24.9 33 0.0011 29.0 2.1 45 176-222 86-130 (182)
405 3ttc_A HYPF, transcriptional r 24.7 27 0.00093 36.2 1.8 25 197-221 67-99 (657)
406 2pv0_B DNA (cytosine-5)-methyl 24.6 44 0.0015 32.1 3.1 45 174-219 90-147 (386)
407 1joc_A EEA1, early endosomal a 24.5 23 0.0008 28.1 1.0 31 176-206 68-102 (125)
408 4gq2_M Nucleoporin NUP120; bet 24.5 67 0.0023 35.0 5.0 40 102-141 829-868 (950)
409 3mcx_A SUSD superfamily protei 24.3 1.6E+02 0.0055 28.9 7.5 85 56-140 123-229 (477)
410 2e2a_A Protein (enzyme IIA); h 24.0 90 0.0031 23.8 4.2 31 20-50 18-48 (105)
411 2rpa_A Katanin P60 ATPase-cont 23.9 31 0.0011 24.9 1.4 27 116-142 15-41 (78)
412 3t5x_A PCI domain-containing p 23.8 55 0.0019 28.3 3.4 35 113-147 14-48 (203)
413 1upt_B Golgi autoantigen, golg 23.7 28 0.00094 23.6 1.1 31 421-451 23-53 (60)
414 1wv8_A TT1413, hypothetical pr 23.4 1.1E+02 0.0037 21.7 4.2 47 343-393 4-51 (73)
415 1wcr_A PTS system, N, N'-diace 23.4 94 0.0032 23.6 4.2 31 20-50 16-46 (103)
416 2cpt_A SKD1 protein, vacuolar 23.3 1.3E+02 0.0044 23.4 5.1 47 94-148 14-60 (117)
417 2ymb_A MITD1, MIT domain-conta 23.1 17 0.0006 32.8 0.0 34 18-51 19-52 (257)
418 2ct7_A Ring finger protein 31; 23.1 12 0.0004 27.6 -1.0 29 179-207 27-61 (86)
419 3ql9_A Transcriptional regulat 23.0 67 0.0023 25.6 3.4 44 176-219 56-110 (129)
420 2cfu_A SDSA1; SDS-hydrolase, l 22.8 77 0.0026 32.9 4.9 34 96-129 466-499 (658)
421 1iml_A CRIP, cysteine rich int 22.8 50 0.0017 23.0 2.5 44 176-221 26-71 (76)
422 3lew_A SUSD-like carbohydrate 22.6 91 0.0031 31.0 5.2 87 56-142 119-232 (495)
423 2lcq_A Putative toxin VAPC6; P 22.5 25 0.00085 29.3 0.9 11 212-222 149-159 (165)
424 1x61_A Thyroid receptor intera 22.4 78 0.0027 21.6 3.4 31 178-208 34-65 (72)
425 1wd2_A Ariadne-1 protein homol 22.0 9.1 0.00031 26.1 -1.6 33 179-211 8-48 (60)
426 2xze_A STAM-binding protein; h 21.9 85 0.0029 25.5 3.9 40 19-58 37-80 (146)
427 4abx_A DNA repair protein RECN 21.8 2.3E+02 0.0079 23.5 6.9 50 96-145 73-122 (175)
428 2fiy_A Protein FDHE homolog; F 21.7 37 0.0013 31.6 1.9 46 175-220 180-231 (309)
429 2rkl_A Vacuolar protein sortin 21.7 1.2E+02 0.0041 19.9 3.8 35 17-51 15-49 (53)
430 3k1s_A PTS system, cellobiose- 21.6 1.1E+02 0.0036 23.6 4.2 32 19-50 19-50 (109)
431 3a1b_A DNA (cytosine-5)-methyl 21.2 56 0.0019 27.0 2.7 45 174-219 76-133 (159)
432 3l9k_W Dynein intermediate cha 21.1 69 0.0023 19.5 2.4 30 434-463 1-30 (38)
433 2k16_A Transcription initiatio 21.0 67 0.0023 22.6 2.8 48 175-222 16-70 (75)
434 3qnk_A Putative lipoprotein; a 20.9 1.6E+02 0.0055 29.3 6.7 87 56-142 109-211 (517)
435 1yuz_A Nigerythrin; rubrythrin 20.9 1.1E+02 0.0036 26.4 4.6 9 212-220 187-195 (202)
436 1erd_A Pheromone ER-2; NMR {Eu 20.9 19 0.00064 21.0 -0.2 16 193-208 10-25 (40)
437 3l8r_A PTCA, putative PTS syst 20.8 1.1E+02 0.0038 23.9 4.2 31 20-50 35-65 (120)
438 1qsa_A Protein (soluble lytic 20.7 91 0.0031 32.1 4.8 54 31-107 294-347 (618)
439 1y02_A CARP2, FYVE-ring finger 20.4 13 0.00045 29.3 -1.2 46 176-221 18-67 (120)
440 3jq1_A SUSD superfamily protei 20.3 1.9E+02 0.0065 28.5 7.0 86 56-141 110-208 (481)
441 2yw8_A RUN and FYVE domain-con 20.1 36 0.0012 24.6 1.2 30 177-206 19-52 (82)
No 1
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.2e-34 Score=262.91 Aligned_cols=193 Identities=13% Similarity=0.267 Sum_probs=167.8
Q ss_pred Cccceeee--ccCCCCccCcccCchHHHHHHHHHHhCCceeEEEEeCC------CCCccccccceEEEEEeeecCCceEE
Q 012162 263 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDP------TTGSVADFACEVEITECEPLPDGRFV 334 (469)
Q Consensus 263 ~lPl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~G~~~~I~~~~~~~dg~~~ 334 (469)
.+|+||++ |+|||+.+||+||+++|+.|+++|+++++.||++++.. ..+++|.+||+|+|.++.++|||++.
T Consensus 8 ~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~i~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~~l~dG~~~ 87 (209)
T 3m65_A 8 SIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDEPGEDEIFTVGTYTKIKQMLKLPNGTIR 87 (209)
T ss_dssp EEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTTSEEEEEEBSSTTCSSCCGGGBCSEEEEEEEEEEEECTTSCEE
T ss_pred ceEEEEeCCccccCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCCCCcchhhheeEEEEEEEEEECCCCeEE
Confidence 49999996 99999999999999999999999999999999999843 23578999999999999999999999
Q ss_pred EEEEeccceEEeeeeccCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhcC
Q 012162 335 LEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEVM 414 (469)
Q Consensus 335 v~~~g~~R~~i~~~~~~~~~~~a~ve~~~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (469)
|.++|.+||+|.++.+.+||+.|+|+++++.+.. ..+.+++.+.+.+.+.+|.......+. ++...
T Consensus 88 v~v~G~~R~ri~~~~~~~~~~~a~v~~~~~~~~~----~~e~~al~~~l~~~~~~~~~~~~~~~~-------e~~~~--- 153 (209)
T 3m65_A 88 VLVEGLKRAHIVKYNEHEDYTSVDIQLIHEDDSK----DTEDEALMRTLLDHFDQYIKISKKISA-------ETYAA--- 153 (209)
T ss_dssp EEEEEEEEEEEEEEEECSSSEEEEEEECCCC--C----CSHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---
T ss_pred EEEEEEEEEEEEEEEcCCCcEEEEEEEecCCCCC----CHHHHHHHHHHHHHHHHHHHhCCCCCH-------HHHHH---
Confidence 9999999999999999999999999999885432 245678889999999998887655543 22222
Q ss_pred CCCCCCcchhHHHHHhcCCCChhHhhhhccCCCHHHHHHHHHHHHHhhhccccCC
Q 012162 415 MPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQGCRLQ 469 (469)
Q Consensus 415 ~~~~~~p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eRl~~l~~~l~~~~~~~~~~ 469 (469)
+...+||++++|++|++++++.++||+|||+.|+.+|+++++.+|.+|++..++|
T Consensus 154 ~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~~d~~~Rl~~l~~~L~~E~e~~~l~ 208 (209)
T 3m65_A 154 VTDIEEPGRMADIVASHLPLKLKDKQDILETADVKDRLNKVIDFINNEKEVLEIE 208 (209)
T ss_dssp HHTCCCHHHHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 2347999999999999999999999999999999999999999999999876654
No 2
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=100.00 E-value=4.1e-33 Score=261.58 Aligned_cols=193 Identities=17% Similarity=0.234 Sum_probs=166.9
Q ss_pred CCccceeee--ccCCCCccCcccCchHHHHHHHHHHhCCceeEEEEeCC------CCCccccccceEEEEEeeecCCceE
Q 012162 262 DLMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDP------TTGSVADFACEVEITECEPLPDGRF 333 (469)
Q Consensus 262 ~~lPl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~G~~~~I~~~~~~~dg~~ 333 (469)
..+|+||++ |+|||+.+||+||+++|+.|+++|+++++.||++++.. ..+++|.+||+|+|.++.++|||++
T Consensus 16 ~~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~~~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~~lpdG~~ 95 (252)
T 3ljc_A 16 IEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTV 95 (252)
T ss_dssp CCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSSCCSSSBCSEEEEEEECCCBCCTTSCE
T ss_pred CceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCCCCccchhheeEEEEEEEEEECCCCeE
Confidence 359999997 99999999999999999999999999999999999842 2357999999999999999999999
Q ss_pred EEEEEeccceEEeeeeccCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 012162 334 VLEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEV 413 (469)
Q Consensus 334 ~v~~~g~~R~~i~~~~~~~~~~~a~ve~~~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (469)
.|.++|.+||+|.++.+.+||+.|+|+++++.+.+ ..+.+++.+.+.+.+.+|.......+. ++...
T Consensus 96 ~v~v~G~~R~rI~~~~~~~~~~~a~ve~l~d~~~~----~~e~~al~~~l~~~~~~~~~l~~~~~~-------e~~~~-- 162 (252)
T 3ljc_A 96 KVLVEGLQRARISALSDNGEHFSAKAEYLESPTID----EREQEVLVRTAISQFEGYIKLNKKIPP-------EVLTS-- 162 (252)
T ss_dssp EEEEEEEEEEECSEEEEETTEEEEECCCCCCCCSC----HHHHHHHHHHHHHHHHHHHHHHCSSCH-------HHHHH--
T ss_pred EEEEEEEEEEEEEEEEcCCCcEEEEEEeecCCCCC----ChHHHHHHHHHHHHHHHHHHhcccCCH-------HHHHH--
Confidence 99999999999999999999999999999875322 245778888899999888876554443 22122
Q ss_pred CCCCCCCcchhHHHHHhcCCCChhHhhhhccCCCHHHHHHHHHHHHHhhhccccC
Q 012162 414 MMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQGCRL 468 (469)
Q Consensus 414 ~~~~~~~p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eRl~~l~~~l~~~~~~~~~ 468 (469)
+...+||++++|++|+++|++.++||+|||+.|+.+|+++++.+|.++++.-.+
T Consensus 163 -~~~~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l 216 (252)
T 3ljc_A 163 -LNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQV 216 (252)
T ss_dssp -TTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHccCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999998876543
No 3
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=100.00 E-value=1.1e-32 Score=251.85 Aligned_cols=190 Identities=21% Similarity=0.260 Sum_probs=156.0
Q ss_pred Cccceeee-ccCCCCccCcccCchHHHHHHHHHHhCCceeEEEEeCCC--------CCccccccceEEEEEeeecCCceE
Q 012162 263 LMPLFVMD-VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDPT--------TGSVADFACEVEITECEPLPDGRF 333 (469)
Q Consensus 263 ~lPl~~l~-v~fP~~~~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~G~~~~I~~~~~~~dg~~ 333 (469)
.+|+||+. |+|||+.+||+||+++|+.|+++|+++++.||++++.+. .+++|.+||+|+|.++.++|||++
T Consensus 3 ~lPl~PL~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~~glv~~~~~~~~~~~~~~~dl~~vGt~a~I~~~~~lpdG~~ 82 (210)
T 1zbo_A 3 EIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALL 82 (210)
T ss_dssp EEEEEEESSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTTCE
T ss_pred EeeEEecCeeecCCCceeeEECCHHHHHHHHHHHhcCCcEEEEEeCCCcccCcccccCchhceEEEEEEEEEEeCCCceE
Confidence 48999998 999999999999999999999999999999999998532 145899999999999999999999
Q ss_pred EEEEEeccceEEee-eeccCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 012162 334 VLEIESRRRFRILR-SWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVE 412 (469)
Q Consensus 334 ~v~~~g~~R~~i~~-~~~~~~~~~a~ve~~~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (469)
.|.++|.+||+|.+ +.+.+||+.|+|+++++.+.. ....+.+++.+.+++.+.++..... .+ ....+.
T Consensus 83 ~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~~~~--~~~~e~~al~~~l~~~~~~~~~~~~-~~--------~~~~l~ 151 (210)
T 1zbo_A 83 ELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPL--EVPPELARSASALGRLIARLQREGV-PP--------HIMPMA 151 (210)
T ss_dssp EEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCC--CCCGGGHHHHHHHHHHHHHHHHTTC-CT--------TTCSBC
T ss_pred EEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCCCCC--CCcHHHHHHHHHHHHHHHHHHHhcc-cc--------ccccCC
Confidence 99999999999965 668899999999999885321 1234677888888888877765430 00 000111
Q ss_pred cCCCCCCCcchhHHHHHhcCCCChhHhhhhccCCCHHHHHHHHHHHHHhhhcc
Q 012162 413 VMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRERIRRGLIFLRAEEQG 465 (469)
Q Consensus 413 ~~~~~~~~p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eRl~~l~~~l~~~~~~ 465 (469)
.+...+||++|+|++|++++++.++||+|||+ |+.+|+++++.+|.++..+
T Consensus 152 -~~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~-d~~~Rl~~l~~~L~~e~~~ 202 (210)
T 1zbo_A 152 -APFRLDDCGWVADRWAEMLSLPPADKARLLLL-PPLDRLREIDAVLAADGHA 202 (210)
T ss_dssp -SCCCTTCHHHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHHC----
T ss_pred -CcCCCCCHHHHHHHHHHhCCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHhhh
Confidence 14456899999999999999999999999999 9999999999999998765
No 4
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.96 E-value=4.4e-30 Score=246.09 Aligned_cols=198 Identities=22% Similarity=0.318 Sum_probs=165.5
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|..++..|+|++|+..|++|++.+|+++.+++++|.+|..+|+| ++|+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 59 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-----------------------EQALA 59 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh-----HHHHH---------------------
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL-----QASLQ--------------------- 154 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~~~--------------------- 154 (469)
+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.. ...+.
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 139 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL 139 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999999999999999999876311 11110
Q ss_pred ----------HHHHhhhhh-------------------------------h----c-ccCCCCCCCcccccccccccccc
Q 012162 155 ----------NLERTTASL-------------------------------I----G-RRIHGTPERTDDFDCTLCLKLLY 188 (469)
Q Consensus 155 ----------~~~~~~~~~-------------------------------~----~-~~~~~~~~~~~~~~C~ic~~~~~ 188 (469)
..++++... . + ............+.|+||.++|.
T Consensus 140 ~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~ 219 (281)
T 2c2l_A 140 HSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMR 219 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhc
Confidence 111111000 0 0 01223445667899999999999
Q ss_pred ccEEccCCCcccHHHHHHHcccC-CCccccccccccCCCcccCcccHHHHHHHhch
Q 012162 189 EPITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 243 (469)
Q Consensus 189 ~p~~~~cgh~~C~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (469)
+||+++|||+||+.||..|+..+ ..||.||.++.. .++.+|..|+++|+.|..
T Consensus 220 dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~--~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 220 EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ--EQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG--GGCEECHHHHHHHHHHHT
T ss_pred CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch--hcCcccHHHHHHHHHHHH
Confidence 99999999999999999999864 459999999853 578999999999999864
No 5
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.85 E-value=2.3e-21 Score=160.60 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=93.0
Q ss_pred Cccceeee--ccCCCCccCcccCchHHHHHHHHHHhCCceeEEEEeCC------CCCccccccceEEEEEeeecCCceEE
Q 012162 263 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDP------TTGSVADFACEVEITECEPLPDGRFV 334 (469)
Q Consensus 263 ~lPl~~l~--v~fP~~~~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~G~~~~I~~~~~~~dg~~~ 334 (469)
.+|+||++ |+|||+.+||+||+++|++|+++|+++++.|+++++.. ..+++|.+||+|+|.++.+++||++.
T Consensus 17 ~lPl~PLr~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~~~i~lv~~k~~~~~~p~~~dl~~vGt~a~I~~~~~lpdG~~~ 96 (125)
T 2ane_A 17 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVK 96 (125)
T ss_dssp EEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSSCCGGGBCSEEEEEEEEEEEECTTSCEE
T ss_pred eEEEEEeCCeeeCCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCccCCCccchhccEEEEEEEEEeeCCCCcEE
Confidence 49999996 99999999999999999999999999888999998853 22478999999999999999999999
Q ss_pred EEEEeccceEEeeeeccCCeeEEEEEEec
Q 012162 335 LEIESRRRFRILRSWDQDGYRVAEIEWVQ 363 (469)
Q Consensus 335 v~~~g~~R~~i~~~~~~~~~~~a~ve~~~ 363 (469)
|.++|.+||+|.++.+.+||+.|+|++++
T Consensus 97 ilv~G~~R~rI~~~~~~~~~~~a~V~~l~ 125 (125)
T 2ane_A 97 VLVEGLQRARISALSDNGEHFSAKAEYLE 125 (125)
T ss_dssp EEEEEEEEEEEEEEEECSSSEEEEEEEC-
T ss_pred EEEEEEEEEEEEEEEcCCCcEEEEEEECC
Confidence 99999999999999889999999999873
No 6
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=6e-20 Score=153.52 Aligned_cols=114 Identities=25% Similarity=0.445 Sum_probs=110.2
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..++.+.++|+.+++.|+|++|+..|++|++++|+++.+|.++|.+|..+|++ ++|+
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-----------------------~~A~ 67 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF-----------------------QRAL 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH-----------------------HHHH
Confidence 45889999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
.+++++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..++..+..+
T Consensus 68 ~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 68 DDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998887765
No 7
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.75 E-value=7.3e-19 Score=150.75 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=116.8
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC-------Ccc-----cccchhHHHHHHHhhhccCCCCCcccCc
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG-------DPI-----VLGNRSSAYIRISQFLKHRPPSASEYRP 85 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 85 (469)
....+..++..|+.+++.|+|++|+..|++||+++|+ +.. +|.|+|.++..+|+|
T Consensus 7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~------------- 73 (159)
T 2hr2_A 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF------------- 73 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH-------------
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH-------------
Confidence 4557899999999999999999999999999999999 333 999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHhhc-------cccchHHH----HHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHH
Q 012162 86 LNGLDPTTHAELALKDAEKLLNL-------QSNSMKSH----LLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 154 (469)
Q Consensus 86 ~~~~~~~~~~~~A~~~~~~al~l-------~p~~~~~~----~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 154 (469)
++|+..+++||++ +|+++++| +++|.++..+|+|++|+..|++|++++|+++.+...+.
T Consensus 74 ----------~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 74 ----------DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp ----------HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred ----------HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 9999999999999 99999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhc
Q 012162 155 NLERTTASLIG 165 (469)
Q Consensus 155 ~~~~~~~~~~~ 165 (469)
.+++.++....
T Consensus 144 ~~~~~~~~~~~ 154 (159)
T 2hr2_A 144 RMMEVAIDRIA 154 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988876543
No 8
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.71 E-value=1.1e-17 Score=145.51 Aligned_cols=126 Identities=22% Similarity=0.276 Sum_probs=117.4
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC------------------CCCCcccccchhHHHHHHHhhhccCCC
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI------------------KPGDPIVLGNRSSAYIRISQFLKHRPP 78 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~~~~~ 78 (469)
+....+..+..+|+.+++.|+|++|+..|++|+++ +|.++.+|.++|.+|+.+|+|
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~------ 79 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL------ 79 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH------
Confidence 45567899999999999999999999999999999 777789999999999999999
Q ss_pred CCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc-hhHHHHHHHH
Q 012162 79 SASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN-PLQASLQNLE 157 (469)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~ 157 (469)
++|+.+++++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|+++ .+...+..++
T Consensus 80 -----------------~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 80 -----------------HEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp -----------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 7788999998
Q ss_pred Hhhhhhhc
Q 012162 158 RTTASLIG 165 (469)
Q Consensus 158 ~~~~~~~~ 165 (469)
+.+.....
T Consensus 143 ~~~~~~~~ 150 (162)
T 3rkv_A 143 ERRAEKKA 150 (162)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 88877655
No 9
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.70 E-value=2.2e-17 Score=137.95 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=104.8
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
....+.++.+.|+.+++.|+|++|+.+|++|++++|+++.+|.++|.+|+.+|+| ++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~-----------------------~~ 60 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF-----------------------AE 60 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH-----------------------HH
Confidence 4567888999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccch-------HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 98 ALKDAEKLLNLQSNSM-------KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 98 A~~~~~~al~l~p~~~-------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
|+.+++++++++|++. .+|+++|.++..+|++++|+..|+++++.+|+ ++....+..++
T Consensus 61 A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~le 126 (127)
T 4gcn_A 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELE 126 (127)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhC
Confidence 9999999999998764 58999999999999999999999999999885 45555555554
No 10
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.5e-17 Score=135.86 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=112.7
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+..+..+|..++..|+|++|+..|+++++++|+++.+|.++|.+|..+|+| ++|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-----------------------~~A~ 58 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-----------------------PEAI 58 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH-----------------------HHHH
Confidence 35788999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC------CCCchhHHHHHHHHHhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD------PFSNPLQASLQNLERTT 160 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~ 160 (469)
..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++ |++..+...+..+.+++
T Consensus 59 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 59 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 99999988888887654
No 11
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.67 E-value=1.9e-16 Score=138.00 Aligned_cols=126 Identities=25% Similarity=0.306 Sum_probs=117.9
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
+...++..+...|..++..|+|++|+..|+++++++|+++.+|+++|.+|+.+|+| +
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~ 62 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH-----------------------E 62 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH-----------------------H
Confidence 34556889999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch--hHHHHHHHHHhhhhhhc
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP--LQASLQNLERTTASLIG 165 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~ 165 (469)
+|+..++++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++.. ....+..+++.+.+...
T Consensus 63 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 63 KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR 133 (164)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988 67778888888777654
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.66 E-value=1.2e-16 Score=137.77 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=102.4
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
..++..+...|..++..|+|++|+..|+++++++|+++.+|.++|.+|..+|+| ++|
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-----------------------~~A 89 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF-----------------------QQA 89 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH-----------------------HHH
Confidence 445788999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
+..++++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++
T Consensus 90 i~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 90 ADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999875
No 13
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.65 E-value=3.4e-16 Score=134.43 Aligned_cols=124 Identities=8% Similarity=0.052 Sum_probs=115.1
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
..++..+...|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|+| ++|
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A 74 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY-----------------------DLA 74 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH-----------------------HHH
Confidence 345778899999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++........++..+....+
T Consensus 75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888888888777776554
No 14
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.63 E-value=5.1e-16 Score=132.02 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=115.4
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.....+...|..++..|+|++|+..|+++++.+|+++.+|+++|.+|..+|+| ++|+
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~ 72 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY-----------------------EQAL 72 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH-----------------------HHHH
Confidence 45778889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++........+...+....+
T Consensus 73 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999888888888777766543
No 15
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.61 E-value=4e-16 Score=134.24 Aligned_cols=115 Identities=12% Similarity=0.007 Sum_probs=105.2
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.....++..|..++..|+|++|+..|+++++++|+++.+|.++|.+|..+|++ ++|+
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~-----------------------~~A~ 85 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT-----------------------DKAV 85 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch-----------------------HHHH
Confidence 34556778899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHH-HhccccCCCCCchhHHHHHHHH
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDA-ILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~~~~~~ 157 (469)
..++++++++|+++.+|+.+|.+|...|++++|... +++|++++|+++.+......+-
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999887765 5999999999999877666553
No 16
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.58 E-value=1.1e-15 Score=117.47 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=64.5
Q ss_pred CCccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhchHHHH
Q 012162 173 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYA 247 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (469)
...+.+.|+||+++|.+||+++|||+||+.||..|+.....||.||.++.. .++.+|..|+++|+.|......
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~--~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE--SMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG--GGCEECHHHHHHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh--HhcchHHHHHHHHHHHHHHhhh
Confidence 455789999999999999999999999999999999877899999999854 5789999999999998755443
No 17
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.58 E-value=4.1e-15 Score=122.94 Aligned_cols=103 Identities=13% Similarity=0.057 Sum_probs=93.6
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+...|..++..|++++|+..|+++++.+|+++.+|+++|.++..+|++ ++|+..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~~ 74 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-----------------------GLAIIAL 74 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 45678999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
+++++++|+++.+++.+|.+|...|++++|+..|+++++++|++..
T Consensus 75 ~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 75 NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999999999999999998754
No 18
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.56 E-value=5.9e-15 Score=126.20 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=98.8
Q ss_pred HhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccch
Q 012162 34 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 113 (469)
Q Consensus 34 ~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~ 113 (469)
+.+.|++|+..|++|++++|+++.+|.++|.++..++++.. +.+.-...++|+..+++||+++|++.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~-------------g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS-------------ISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC-------------HHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccch-------------hhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 45789999999999999999999999999999999988600 00000012699999999999999999
Q ss_pred HHHHHHHHHHHHHh-----------HHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 114 KSHLLKANALILLE-----------RYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 114 ~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
.+|+.+|.+|..+| +|++|+.+|++|++++|++..+...++.+.++.+
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~e 139 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ 139 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHh
Confidence 99999999999875 8999999999999999999999999888877654
No 19
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=1.9e-14 Score=129.26 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=118.7
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc----------------ccccchhHHHHHHHhhhccCCCCC
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----------------IVLGNRSSAYIRISQFLKHRPPSA 80 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~ 80 (469)
+....+..+...|..++..|+|++|+..|.+++++.|.++ .++.++|.+|..+|+|
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------- 104 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY-------- 104 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH--------
Confidence 4556788899999999999999999999999999999988 8999999999999999
Q ss_pred cccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 81 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 81 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...+
T Consensus 105 ---------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 105 ---------------PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp ---------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhhhc
Q 012162 161 ASLIG 165 (469)
Q Consensus 161 ~~~~~ 165 (469)
+....
T Consensus 170 ~~~~~ 174 (198)
T 2fbn_A 170 KEARK 174 (198)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76654
No 20
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.55 E-value=6.5e-15 Score=123.42 Aligned_cols=121 Identities=24% Similarity=0.369 Sum_probs=112.3
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+..+...|..++..|+|++|+..|.++++++|+++.++.++|.++..+|++ ++|+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~ 63 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-----------------------EQAL 63 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH-----------------------HHHH
Confidence 35788999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC-----CchhHHHHHHHHHhhhhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF-----SNPLQASLQNLERTTASL 163 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~ 163 (469)
..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+ +..+...+..+++.....
T Consensus 64 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 64 ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 677777777777665443
No 21
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=2.3e-14 Score=115.86 Aligned_cols=115 Identities=31% Similarity=0.482 Sum_probs=109.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|..++..|+|++|+..|+++++.+|+++.++.++|.++...|++ ++|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 59 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-----------------------QKAYE 59 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
.++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 60 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999998888777654
No 22
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.54 E-value=1.5e-15 Score=120.14 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=63.2
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhchH
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 244 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (469)
....+.+.|+||+++|.+||+++|||+||+.||..|+.....||.||.++.. .++.+|..|+++|+.|...
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~--~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE--SMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT--TSSEECHHHHHHHHHHHHT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh--hhceECHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999877899999999853 5889999999999998643
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.54 E-value=4e-15 Score=112.83 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=60.9
Q ss_pred CCccccccccccccccccEEccCCCcccHHHHHHHccc-CCCccccccccccCCCcccCcccHHHHHHHhch
Q 012162 173 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 243 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (469)
...+.+.|+||.+.|.+|++++|||+||+.||..|+.. ...||.||.++.. .++.+|..|+++|++|..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~--~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH--AGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS--CCCEECTTTHHHHHHHHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh--hhCccCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999986 5689999999853 478889999999998753
No 24
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=119.34 Aligned_cols=121 Identities=26% Similarity=0.390 Sum_probs=112.7
Q ss_pred hhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 16 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
+........+...|..++..|+|++|+..|+++++.+|+++.++.++|.+|...|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~----------------------- 66 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF----------------------- 66 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH-----------------------
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH-----------------------
Confidence 344556889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus 67 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 67 QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888777766544
No 25
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.52 E-value=9.7e-15 Score=132.61 Aligned_cols=114 Identities=16% Similarity=0.056 Sum_probs=108.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccc----------------hhHHHHHHHhhhccCCCCCcccC
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGN----------------RSSAYIRISQFLKHRPPSASEYR 84 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~~~~~~~~~~~ 84 (469)
.+..+..+|..++..|+|++|+..|+++++++|+++.+|++ +|.+|..+|++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------ 70 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY------------ 70 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCH------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCH------------
Confidence 46778999999999999999999999999999999999999 99999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 85 PLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 85 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
++|+..++++++++|+++.+++.+|.+|...|++++|+..|+++++++|++..+...+..+-
T Consensus 71 -----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 71 -----------DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp -----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888777654
No 26
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.52 E-value=1.2e-14 Score=114.47 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=63.2
Q ss_pred CCCccccccccccccccccEEccCC-CcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhchH
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCG-HSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 244 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cg-h~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (469)
....+.+.|+||+++|.+||+++|| |+||+.||..|+.....||.||.++.. .++.+|..|+++|+.|...
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~--~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM--DQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT--TTSEECHHHHHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh--hhceEcHHHHHHHHHHHHH
Confidence 3456789999999999999999999 999999999999887799999999854 5889999999999998643
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=3.6e-14 Score=129.67 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=111.2
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.++..+...|..++..|++++|+..|+++++++|+++.+++++|.++...|++ ++|+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~ 59 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLV-----------------------NPAL 59 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34567889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHH-----------hHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILL-----------ERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
..++++++++|+++.+++.+|.++... |++++|+..|+++++++|++..+...+..+-...+.
T Consensus 60 ~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 60 ENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999 999999999999999999999888777766554443
No 28
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.51 E-value=2.5e-14 Score=146.06 Aligned_cols=124 Identities=15% Similarity=0.275 Sum_probs=112.5
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---------------cccccchhHHHHHHHhhhccCCCCCcc
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---------------PIVLGNRSSAYIRISQFLKHRPPSASE 82 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (469)
....+..+..+|+.+++.|+|++|+..|++|++++|++ ..+|+++|.+|+++++|
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~---------- 333 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY---------- 333 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH----------
Confidence 44568889999999999999999999999999999998 58999999999999999
Q ss_pred cCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 83 YRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 83 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
++|+.+++++++++|+++++|+++|.+|..+|+|++|+.+|++|++++|++..+...+..+...+++
T Consensus 334 -------------~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 334 -------------TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp -------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888888877765
Q ss_pred hh
Q 012162 163 LI 164 (469)
Q Consensus 163 ~~ 164 (469)
..
T Consensus 401 ~~ 402 (457)
T 1kt0_A 401 HN 402 (457)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 29
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.51 E-value=3.4e-14 Score=139.09 Aligned_cols=124 Identities=17% Similarity=0.263 Sum_probs=114.9
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---------------cccccchhHHHHHHHhhhccCCCCCcc
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---------------PIVLGNRSSAYIRISQFLKHRPPSASE 82 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (469)
....+..+..+|..++..|+|++|+..|++|++++|++ ..+|.++|.+|+.+|+|
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~---------- 212 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF---------- 212 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH----------
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH----------
Confidence 44568889999999999999999999999999999999 58999999999999999
Q ss_pred cCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 83 YRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 83 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
++|+..++++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+...+++
T Consensus 213 -------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 213 -------------SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp -------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988888777666554
Q ss_pred hh
Q 012162 163 LI 164 (469)
Q Consensus 163 ~~ 164 (469)
..
T Consensus 280 ~~ 281 (336)
T 1p5q_A 280 QL 281 (336)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.51 E-value=5.4e-15 Score=122.72 Aligned_cols=71 Identities=32% Similarity=0.687 Sum_probs=62.3
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHcccC-CCccccccccccCCCcccCcccHHHHHHHhchHHHH
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYA 247 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (469)
+.+.|+||++.+.+|++++|||+||+.||..|+..+ ..||.||.++... ..+.+|..+.+++++++|+...
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~~~~n~~l~~~i~~~~p~~~~ 122 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRS-YAMQVNQPLQTVLNQLFPGYGN 122 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT-CCCCCCHHHHHHHHHHSTTTTT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCC-CCCCCCHHHHHHHHHHcccccc
Confidence 567899999999999999999999999999999754 4899999998542 5788999999999999988543
No 31
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=2.7e-14 Score=153.05 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=92.5
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.++.++.+.|..+.+.|+|++|+..|++|++++|+++.+|+++|.+|.++|++ ++|+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~-----------------------~eA~ 63 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL-----------------------QEAL 63 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 45777888888888888888888888888888888888888888888888888 7888
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
..+++|++++|+++.+|+++|.+|..+|++++|++.|++|++++|++..+...+..+...
T Consensus 64 ~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 64 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123 (723)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888777766665544433
No 32
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.50 E-value=6.7e-15 Score=126.49 Aligned_cols=111 Identities=17% Similarity=0.149 Sum_probs=101.4
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 107 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 107 (469)
.|..+..+|++++|+..|.+++..+|+++..++++|.+|+.+|+| ++|+..++++++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~-----------------------~~A~~~~~~al~ 59 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEY-----------------------DLAKKYICTYIN 59 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHH
Confidence 577888899999999999999999999999999999999999999 999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 108 LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 108 l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+...+..+-...+
T Consensus 60 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999998888776655443
No 33
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.3e-14 Score=118.95 Aligned_cols=118 Identities=20% Similarity=0.351 Sum_probs=111.2
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
....+..+...|..++..|+|++|+..|+++++.+|++ ..++.++|.+|..+|++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~---------------------- 81 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY---------------------- 81 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH----------------------
Confidence 34568889999999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 95 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+.+
T Consensus 82 -~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 82 -DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp -HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998888777754
No 34
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.48 E-value=5.8e-14 Score=116.23 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=106.2
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+...|..++..|+|++|+..|+++++.+|+++ .+++++|.+|+..|+| ++|+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~-----------------------~~A~~ 60 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF-----------------------QLAEA 60 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 467889999999999999999999999999998 7999999999999999 99999
Q ss_pred HHHHHhhccccc---hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 101 DAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 101 ~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
.++++++.+|++ +.+++.+|.++..+|++++|+..|+++++..|++..+......+....
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 999999999999 899999999999999999999999999999999998877777666543
No 35
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.48 E-value=4.3e-14 Score=140.16 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=117.4
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhc----------------CCCCCcccccchhHHHHHHHhhhccCCCCC
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANN----------------IKPGDPIVLGNRSSAYIRISQFLKHRPPSA 80 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (469)
.....+..+...|+.+++.|+|++|+..|++|++ ++|.++.+|.++|.+|+++++|
T Consensus 218 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~-------- 289 (370)
T 1ihg_A 218 KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW-------- 289 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCH--------
Confidence 3445678899999999999999999999999999 8888899999999999999999
Q ss_pred cccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 81 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 81 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
++|+.+++++++++|+++++|+++|.+|..+|+|++|+.+|++|++++|++..+...+..+.+.+
T Consensus 290 ---------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 290 ---------------QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp ---------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888877
Q ss_pred hhhhc
Q 012162 161 ASLIG 165 (469)
Q Consensus 161 ~~~~~ 165 (469)
+....
T Consensus 355 ~~~~~ 359 (370)
T 1ihg_A 355 KAQKD 359 (370)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 36
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.48 E-value=1.4e-13 Score=113.15 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=114.3
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
.....+..+...|..++..|+|++|+..|+++++.+|+++.++.++|.++...|++ +
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~ 63 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY-----------------------A 63 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch-----------------------H
Confidence 34556888999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
+|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+++
T Consensus 64 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999888887777665543
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.47 E-value=4.4e-14 Score=110.66 Aligned_cols=72 Identities=19% Similarity=0.563 Sum_probs=60.8
Q ss_pred CCCCccccccccccccccccEEcc-CCCcccHHHHHHHcccC--CCccccccccccCCCcccCcccHHHHHHHhch
Q 012162 171 TPERTDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDRG--NKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 243 (469)
Q Consensus 171 ~~~~~~~~~C~ic~~~~~~p~~~~-cgh~~C~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (469)
.....+.+.|+||++.+.+|++++ |||+||+.||..|+... ..||.||.++. ....+.+|..+.++++.+..
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~-~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV-SPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC-CTTSCEECHHHHHHHHHHHH
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC-CccccCcCHHHHHHHHHHHH
Confidence 344567889999999999999999 99999999999998643 58999999873 23578899999999988754
No 38
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.46 E-value=2.2e-13 Score=117.51 Aligned_cols=118 Identities=25% Similarity=0.387 Sum_probs=109.9
Q ss_pred hhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 16 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
......+..+...|..++..|+|++|+..|.++++.+|+++.++.++|.++..+|++
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~----------------------- 63 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY----------------------- 63 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-----------------------
Confidence 345667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+...
T Consensus 64 ~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998776544443
No 39
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.46 E-value=1.7e-13 Score=112.79 Aligned_cols=119 Identities=17% Similarity=0.280 Sum_probs=110.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|..++..|+|++|+..|.++++.+|.++.++.++|.+|...|++ ++|+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 59 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY-----------------------NKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 4677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccc-------hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 101 DAEKLLNLQSNS-------MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 101 ~~~~al~l~p~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
.++++++++|++ +.+++.+|.++..+|++++|+..|+++++++| +......+..+.+.++..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999988 99999999999999999999999999999999 677888888887776654
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.46 E-value=2.2e-14 Score=117.39 Aligned_cols=82 Identities=33% Similarity=0.742 Sum_probs=68.5
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHccc-CCCccccccccccC-----CCcccCcccHHHHHHHhchHH
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFIT-----PRTCAVSVTLNSIIQKNFPEE 245 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~-~~~CP~Cr~~~~~~-----~~~~~~~~~l~~~~~~~~~~~ 245 (469)
....+.+.|+||++.+.+|++++|||+||..||..|+.. ...||.||..+... ..+..+|..+.+++++++|++
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~ 89 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRE 89 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHH
Confidence 344567899999999999999999999999999999976 45899999987531 245678999999999999999
Q ss_pred HHHhhhhc
Q 012162 246 YAERKSEH 253 (469)
Q Consensus 246 ~~~~~~~~ 253 (469)
...+..+.
T Consensus 90 ~~~r~~~~ 97 (115)
T 3l11_A 90 CKLRASGQ 97 (115)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhh
Confidence 88776543
No 41
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=9.8e-14 Score=148.73 Aligned_cols=117 Identities=13% Similarity=0.068 Sum_probs=110.2
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+.+.|..+.+.|++++|+..|++|++++|+++.+|+++|.+|..+|++ ++|+.
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~-----------------------~~A~~ 98 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV-----------------------QGALQ 98 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
.+++|++++|+++.+|+++|.+|..+|++++|+..|++|++++|++..+...+..+...+
T Consensus 99 ~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 99 CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 999999999999999999999999999999999999999999999998887776554443
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.45 E-value=2.6e-14 Score=122.14 Aligned_cols=72 Identities=31% Similarity=0.629 Sum_probs=62.9
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHcccCC-CccccccccccCCCcccCcccHHHHHHHhchHHHHH
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYAE 248 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 248 (469)
+.+.|+||++.+.+|++++|||+||+.||..|+..+. .||.||.++... ..+.+|..+.++++.++|+....
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~l~~n~~l~~lv~~~~p~~~~~ 149 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN-YIMIPNEILQTLLDLFFPGYSKG 149 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT-CCCCBCHHHHHHHHHHSTTTTTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC-CCCCCCHHHHHHHHHHhhHhhcc
Confidence 5678999999999999999999999999999998664 899999998543 37889999999999999875443
No 43
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.44 E-value=4.2e-14 Score=138.53 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=97.5
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc-----------------ccccchhHHHHHHHhhhccCCCC
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-----------------IVLGNRSSAYIRISQFLKHRPPS 79 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~~~~~~ 79 (469)
.....+..+..+|+.++..|+|++|+..|.+|+++.|++. .+|+++|.+|+++|+|
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~------- 246 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY------- 246 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC-------
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH-------
Confidence 4566789999999999999999999999999999999877 4899999999999999
Q ss_pred CcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 80 ASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
++|+..++++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..+..+...
T Consensus 247 ----------------~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 247 ----------------DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp ----------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred ----------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888877554
Q ss_pred hh
Q 012162 160 TA 161 (469)
Q Consensus 160 ~~ 161 (469)
..
T Consensus 311 ~~ 312 (338)
T 2if4_A 311 EK 312 (338)
T ss_dssp --
T ss_pred HH
Confidence 43
No 44
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.44 E-value=9.5e-14 Score=120.68 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=61.8
Q ss_pred CCCCccccccccccccccccEEccCCCcccHHHHHHHccc-CCCccccccccccCCCcccCcccHHHHHHHhc
Q 012162 171 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 242 (469)
Q Consensus 171 ~~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~ 242 (469)
.......+.||||.++|.+||+++|||+||+.||..|+.. +..||.||.++.. .++.+|..|+++|+.|.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~--~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ--DQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG--GGCEECHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh--hhCcchHHHHHHHHHHH
Confidence 3455689999999999999999999999999999999975 3479999999854 57899999999999885
No 45
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.43 E-value=2.6e-14 Score=120.79 Aligned_cols=74 Identities=27% Similarity=0.693 Sum_probs=55.1
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhchHHHHHhh
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYAERK 250 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 250 (469)
+++.|+||++.+.+|++++|||+||..||..|+.....||.||.++...+.++..+..+..++.. ++++..+++
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~-l~~~~~~rr 125 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNN-LSSEVKERR 125 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHHTT-SCHHHHHHH
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHHHH-hhHHHHHHH
Confidence 45689999999999999999999999999999998889999999885332233334444444443 444444443
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=4.1e-13 Score=122.62 Aligned_cols=117 Identities=16% Similarity=0.099 Sum_probs=108.2
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHH-----------HhhhccCCCCCcccCccCCC
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI-----------SQFLKHRPPSASEYRPLNGL 89 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 89 (469)
.+..+...|..+...|++++|+..|+++++++|+++.++.++|.++..+ |++
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~----------------- 100 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL----------------- 100 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHH-----------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCH-----------------
Confidence 4678889999999999999999999999999999999999999999999 999
Q ss_pred CCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 90 DPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 90 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++ ++..+...+..+-...+
T Consensus 101 ------~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 101 ------EQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMG 165 (217)
T ss_dssp ------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999 88887776666554443
No 47
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.43 E-value=8.4e-13 Score=119.68 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=93.7
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 107 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 107 (469)
.|..++..|+|++|+..|+++++++|+++.++.++|.+|..+|++ ++|+..++++++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE-----------------------KDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccccchHHHHHHHHHHHHH-----------------------------------hHHHHHHHHHhccccCCCCCchhHHH
Q 012162 108 LQSNSMKSHLLKANALILL-----------------------------------ERYDMARDAILSGLQVDPFSNPLQAS 152 (469)
Q Consensus 108 l~p~~~~~~~~~g~~~~~~-----------------------------------~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (469)
++|+++.+|+.+|.+|... |+|++|+.+|+++++++|++ .+...
T Consensus 117 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~ 195 (208)
T 3urz_A 117 LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKT 195 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHH
Confidence 9999999999998887543 45788999999999999964 34444
Q ss_pred HHHHH
Q 012162 153 LQNLE 157 (469)
Q Consensus 153 ~~~~~ 157 (469)
+.+++
T Consensus 196 l~~i~ 200 (208)
T 3urz_A 196 LDKIL 200 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=1.4e-13 Score=136.97 Aligned_cols=118 Identities=10% Similarity=-0.051 Sum_probs=87.1
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHh-hhccCCCCCcccCccCCCCCchhHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
..+..+...|..+...|++++|+..|++|++++|+++.+|+++|.++..+|+ + ++|
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~-----------------------~eA 151 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL-----------------------HEE 151 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-----------------------HHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCH-----------------------HHH
Confidence 3466677777777777777777777777777777777777777777777775 7 777
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..+..+-..+
T Consensus 152 l~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~ 213 (382)
T 2h6f_A 152 MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF 213 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777777777777777776665555444433
No 49
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.42 E-value=1.3e-13 Score=111.30 Aligned_cols=74 Identities=26% Similarity=0.597 Sum_probs=63.5
Q ss_pred ccccccccccccccccEEc-cCCCcccHHHHHHHcccCCCccccccccccCC--CcccCcccHHHHHHHhchHHHHH
Q 012162 175 TDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITP--RTCAVSVTLNSIIQKNFPEEYAE 248 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~-~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~ 248 (469)
.+.+.|+||++.+.+|+++ +|||+||+.||..|+..+..||.||..+.... ..+..|..+.++++++++.....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 89 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKN 89 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTHHHH
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhHHHH
Confidence 4678999999999999997 99999999999999998889999999985321 25678999999999999865533
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=2.1e-13 Score=135.56 Aligned_cols=118 Identities=10% Similarity=-0.010 Sum_probs=112.1
Q ss_pred hhHHHHHHhHHHHHHhcc-HHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 20 THVFDLVQKGNRAFRESN-FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~-~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
..+..+..+|..+...|+ |++|+..|++|++++|+++.+|+++|.++..+|++ ++|
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~-----------------------~eA 185 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP-----------------------SQE 185 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-----------------------TTH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH-----------------------HHH
Confidence 447888999999999996 99999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
+..++++++++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++..+..+-..+
T Consensus 186 l~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 186 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998888876653
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=6.4e-13 Score=121.66 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=101.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCC-CCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKP-GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
...+..+|..++..|+|++|+..|+++++++| .+..+++++|.++..+|++ ++|+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 63 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKY-----------------------KEAAD 63 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcH-----------------------HHHHH
Confidence 47889999999999999999999999999999 8999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
.++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++....
T Consensus 64 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 113 (228)
T 4i17_A 64 YFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIE 113 (228)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence 99999999999999999999999999999999999999999999998543
No 52
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.39 E-value=6.6e-14 Score=114.58 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=90.0
Q ss_pred HhccHHHHHHHHHHHhcC---CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccc
Q 012162 34 RESNFEEAISNYSRANNI---KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 110 (469)
Q Consensus 34 ~~~~~~~A~~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 110 (469)
..|+|++|+..|++|+++ +|+++.++.++|.+|..+|+| ++|+..++++++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~~~~al~~~p 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY-----------------------RKAEAVLANGVKQFP 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCC
Confidence 468999999999999999 699999999999999999999 999999999999999
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 111 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
+++.+++.+|.++..+|++++|+..|+++++.+|+++.+......+.
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765544443
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=8.4e-13 Score=116.53 Aligned_cols=115 Identities=16% Similarity=0.220 Sum_probs=89.5
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++..+...|..++..|+|++|+..|++|++++|+++.++.++|.+|..+|++ ++|+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----------------------~~a~~ 60 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP-----------------------NDAIE 60 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 4677889999999999999999999999999999999999999999999998 66666
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
.+.+++..+|+++.++..+|.++...++++.|+..+.++++++|++..+...+..+-.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 61 SLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666655555444433
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=7.8e-13 Score=121.09 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=107.1
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc-------ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
....+...|..+...|+|++|+..|+++++++|+++ .+|.++|.++..+|++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~--------------------- 133 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI--------------------- 133 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH---------------------
Confidence 466788889999999999999999999999999988 6688889999999999
Q ss_pred hHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhHH---------------------------HHHHHHHhccccCCC
Q 012162 94 HAELALKDAEKLLNLQSN--SMKSHLLKANALILLERY---------------------------DMARDAILSGLQVDP 144 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~--~~~~~~~~g~~~~~~~~~---------------------------~~A~~~~~~al~~~p 144 (469)
++|+..++++++++|+ ++.+++.+|.+|...|+. ++|+..|+++++++|
T Consensus 134 --~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 134 --EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp --HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999 999999999999999998 999999999999999
Q ss_pred CCchhHHHHHHHHHhh
Q 012162 145 FSNPLQASLQNLERTT 160 (469)
Q Consensus 145 ~~~~~~~~~~~~~~~~ 160 (469)
++..+...+..++..+
T Consensus 212 ~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 212 NRTEIKQMQDQVKAMI 227 (228)
T ss_dssp TCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999888887654
No 55
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.38 E-value=1.4e-12 Score=106.17 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=108.3
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|..++..|++++|+..|.++++.+|+++.++..+|.++...|++ ++|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 64 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-----------------------DEAIE 64 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 3677888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
.++++++++|+++.+++.+|.++...|++++|+..|+++++.+|++..+...+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 65 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877766654
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=3.1e-13 Score=119.35 Aligned_cols=115 Identities=13% Similarity=0.024 Sum_probs=78.2
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++..+...|..++..|++++|+..+.+++..+|+++.++..+|.++...+++ +.|+.
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~a~~ 94 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK-----------------------QAAID 94 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3556666777777777777777777777777777777777777777666666 66667
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
.+.++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...+..+-.
T Consensus 95 ~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 95 ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 7777777777776777777777777777777777777777777766666555544433
No 57
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.8e-13 Score=107.53 Aligned_cols=65 Identities=17% Similarity=0.514 Sum_probs=58.2
Q ss_pred cccccccccccccccEEc-cCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhc
Q 012162 176 DDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 242 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~-~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~ 242 (469)
+.+.|+||++.+.+|+.+ +|||+||+.||..|+..+..||.||.++.. .++.+|..+.++++.+.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~--~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE--PDLKNNRILDELVKSLN 86 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG--GGCEECHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh--hhCCcCHHHHHHHHHHH
Confidence 567999999999999998 999999999999999988899999998853 46888999999998863
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.8e-13 Score=106.18 Aligned_cols=68 Identities=16% Similarity=0.473 Sum_probs=57.6
Q ss_pred ccccccccccccccccEEcc-CCCcccHHHHHHHcccC------CCccc--cccc-cccCCCcccCcccHHHHHHHhchH
Q 012162 175 TDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDRG------NKCPL--CRAV-LFITPRTCAVSVTLNSIIQKNFPE 244 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~~-cgh~~C~~Ci~~~~~~~------~~CP~--Cr~~-~~~~~~~~~~~~~l~~~~~~~~~~ 244 (469)
...+.|+||+++|.+||+++ |||+||+.||..|+..+ ..||. |+.. +. ..++.+|..|+++|+.|...
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~--~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR--KSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC--GGGEEECHHHHHHHHHHHTT
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC--HhhCcCCHHHHHHHHHHHHH
Confidence 46789999999999999996 99999999999999753 48999 8765 53 35789999999999988533
No 59
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.35 E-value=4.8e-13 Score=106.99 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=98.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+...|..++..|+|++|+..|+++++.+|.++.++.++|.++..+|++ ++|+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 62 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY-----------------------EEAVDC 62 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH-----------------------HHHHHH
Confidence 345677899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhcccc--chHHHHHHHHHHHHH-hHHHHHHHHHhccccCCCCCc
Q 012162 102 AEKLLNLQSN--SMKSHLLKANALILL-ERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 102 ~~~al~l~p~--~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~ 147 (469)
++++++++|+ +..+++.+|.++..+ |++++|++.+++++..+|++.
T Consensus 63 ~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 63 YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999 999999999999999 999999999999999999764
No 60
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.2e-13 Score=101.78 Aligned_cols=61 Identities=25% Similarity=0.561 Sum_probs=50.8
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHH
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLN 235 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~ 235 (469)
......+.|+||++.+.+|++++|||+||+.||..|+.....||.||.++. ..+.+|..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~---~~~~~~~~l~ 70 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG---GIFNPAKELM 70 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC---SCCEECHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc---ccCCcHHHHH
Confidence 344567899999999999999999999999999999988889999999874 3455554433
No 61
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.34 E-value=1e-13 Score=105.32 Aligned_cols=64 Identities=31% Similarity=0.753 Sum_probs=53.1
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHccc-------CCCccccccccccCCCcccCcccHHHH
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-------GNKCPLCRAVLFITPRTCAVSVTLNSI 237 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~-------~~~CP~Cr~~~~~~~~~~~~~~~l~~~ 237 (469)
....+.+.|+||++.+.+|+.++|||+||+.||..|+.. ...||.||.++.. .++.+|..+.++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~--~~l~~n~~l~~l 77 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF--EHLQANQHLANI 77 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS--SGGGTCSSSCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH--hhCCcCHHHHHh
Confidence 344577899999999999999999999999999999876 4579999999853 467777766554
No 62
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.34 E-value=4.2e-13 Score=106.61 Aligned_cols=65 Identities=25% Similarity=0.530 Sum_probs=55.9
Q ss_pred ccccccccccccccccEE-ccCCCcccHHHHHHHcccC-CCccccccccccCCCcccCcccHHHHHHHh
Q 012162 175 TDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQKN 241 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~ 241 (469)
.+.+.|+||++.+.+|+. ++|||+||+.||..|+... ..||.||.++.. .++..+..+.++++.+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL--RELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG--GGCEECTTHHHHHHHH
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH--HHhHhhHHHHHHHHHH
Confidence 357799999999999999 9999999999999999877 689999999843 5677788888876653
No 63
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.33 E-value=4e-13 Score=137.76 Aligned_cols=116 Identities=26% Similarity=0.420 Sum_probs=108.9
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+..+...|..++..|+|++|+..|++|++++|+++.++.++|.+|..+|+| ++|+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~ 60 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY-----------------------GYAL 60 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-----------------------HHHH
Confidence 34666778899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus 61 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 119 (477)
T 1wao_1 61 GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119 (477)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988877776643
No 64
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.33 E-value=3.1e-13 Score=116.18 Aligned_cols=105 Identities=9% Similarity=-0.093 Sum_probs=94.8
Q ss_pred ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHH
Q 012162 36 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS 115 (469)
Q Consensus 36 ~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 115 (469)
+++..+-..|+++++++|+++.+++++|.+++..|+| ++|+..++++++++|+++.+
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~-----------------------~eA~~~~~~al~~~P~~~~~ 72 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRI-----------------------EEAEVFFRFLCIYDFYNVDY 72 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCHHH
Confidence 3444455679999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 116 HLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 116 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
|+.+|.+|..+|+|++|+..|+++++++|+++.++..+..+-..+++.
T Consensus 73 ~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 73 IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999988877766655543
No 65
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.33 E-value=3.6e-12 Score=111.80 Aligned_cols=118 Identities=13% Similarity=0.191 Sum_probs=106.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHH-HHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSA-YIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
....+...|..++..|+|++|+..|.++++++|+++.++.++|.+ +...|++. .++|+
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~---------------------~~~A~ 101 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM---------------------TAQTR 101 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC---------------------CHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc---------------------hHHHH
Confidence 467888999999999999999999999999999999999999999 77888840 07899
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
..++++++++|+++.+++.+|.+|...|++++|+..|+++++++|++......+..+++.
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~~ 161 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMA 161 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998776666555543
No 66
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=9.5e-13 Score=105.60 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=90.1
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++..+...|..++..|+|++|+..|++|++++|+++.++.++|.+|..+|++ ++|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~ 59 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY-----------------------TQAIQ 59 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccc------hHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 101 DAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 101 ~~~~al~l~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
.++++++++|++ ..+++.+|.++..+|++++|+..|++.
T Consensus 60 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 60 MCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 999999999999 999999999999999888887776654
No 67
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=5.8e-13 Score=102.56 Aligned_cols=65 Identities=29% Similarity=0.756 Sum_probs=53.5
Q ss_pred CCCCccccccccccccccccEEccCCCcccHHHHHHHccc------CCCccccccccccCCCcccCcccHHHH
Q 012162 171 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR------GNKCPLCRAVLFITPRTCAVSVTLNSI 237 (469)
Q Consensus 171 ~~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~~l~~~ 237 (469)
.....+.+.|+||++.+.+|+.++|||+||+.|+..|+.. ...||.||.++.. ..+.+|..+.++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~~~n~~l~~~ 83 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF--GNLKPNLHVANI 83 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT--TCCEECSCCCSS
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH--HhCCcCHHHHHh
Confidence 3445677899999999999999999999999999999876 5589999998853 466677666554
No 68
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.28 E-value=3.7e-12 Score=136.46 Aligned_cols=110 Identities=11% Similarity=-0.028 Sum_probs=56.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+..+|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|+| ++|+..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~ 489 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY-----------------------DSATKH 489 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 344455555555555555555555555555555555555555555555555 555555
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
++++++++|+++.+|+.+|.+|..+|+|++ +..|++|++++|++..++..+..
T Consensus 490 ~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 490 FTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 555555555555555555555555555554 55555555555544444444433
No 69
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=2.7e-12 Score=95.91 Aligned_cols=52 Identities=23% Similarity=0.745 Sum_probs=45.6
Q ss_pred CCCCccccccccccccccccEEcc-CCCcccHHHHHHHcccC--CCccccccccc
Q 012162 171 TPERTDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDRG--NKCPLCRAVLF 222 (469)
Q Consensus 171 ~~~~~~~~~C~ic~~~~~~p~~~~-cgh~~C~~Ci~~~~~~~--~~CP~Cr~~~~ 222 (469)
.....+.+.|+||++.+.+|+.++ |||+||+.||..|+... ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 445567889999999999999999 99999999999999754 58999999763
No 70
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.27 E-value=1.6e-12 Score=113.39 Aligned_cols=71 Identities=28% Similarity=0.733 Sum_probs=60.4
Q ss_pred CCccccccccccccccccEEc-cCCCcccHHHHHHHccc-CCCccccccccccCCCcccCcccHHHHHHHhchH
Q 012162 173 ERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 244 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~~~-~cgh~~C~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (469)
.....+.|+||++.+.+|+.+ +|||+||+.||..|+.. ...||.||.++.. ...+.+|..+.++|.+++++
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS-KRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS-GGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC-cccCCcCHHHHHHHHHHHcc
Confidence 345678999999999999987 99999999999999986 5689999999853 35688999999999998875
No 71
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=1e-11 Score=111.99 Aligned_cols=105 Identities=16% Similarity=0.108 Sum_probs=98.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|..++..|+|++|+..|+++++++|+++.++.++|.+|..+|++ ++|+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~-----------------------~~A~~ 92 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY-----------------------DLAIK 92 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH-----------------------HHHHH
Confidence 3568889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccch----------------HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 101 DAEKLLNLQSNSM----------------KSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 101 ~~~~al~l~p~~~----------------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
.+++++++.|++. .+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 9999999777665 99999999999999999999999999999998643
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=1.8e-11 Score=114.61 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=104.4
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
..+..++.+|..++..|+|++|+..|+++++.+|++ +.+++++|.+|+.+|+| +
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~-----------------------~ 69 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEY-----------------------L 69 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcH-----------------------H
Confidence 347889999999999999999999999999999999 78999999999999999 9
Q ss_pred HHHHHHHHHhhcccc---chHHHHHHHHHHHH--------HhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 97 LALKDAEKLLNLQSN---SMKSHLLKANALIL--------LERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 97 ~A~~~~~~al~l~p~---~~~~~~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
+|+..+++++++.|+ .+.+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+
T Consensus 70 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 140 (261)
T 3qky_A 70 LAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI 140 (261)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH
Confidence 999999999999874 46799999999999 9999999999999999999998776555433
No 73
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.3e-12 Score=93.79 Aligned_cols=54 Identities=31% Similarity=0.722 Sum_probs=47.7
Q ss_pred CCCCCccccccccccccccccEEc-cCCCcccHHHHHHHcccCCCcccccccccc
Q 012162 170 GTPERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223 (469)
Q Consensus 170 ~~~~~~~~~~C~ic~~~~~~p~~~-~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~ 223 (469)
......+.+.|+||++.+.+|+.+ +|||+||+.||..|+.....||.||.++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 344556788999999999999997 999999999999999888899999998853
No 74
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=9.2e-13 Score=101.42 Aligned_cols=64 Identities=30% Similarity=0.768 Sum_probs=53.2
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHccc------CCCccccccccccCCCcccCcccHHHH
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR------GNKCPLCRAVLFITPRTCAVSVTLNSI 237 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~~l~~~ 237 (469)
....+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+.. .++.+|..+.++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP--ENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS--SSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH--HhcCccHHHHHh
Confidence 345577899999999999999999999999999999876 5689999998853 466777666554
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=1.1e-11 Score=126.87 Aligned_cols=120 Identities=16% Similarity=0.061 Sum_probs=111.7
Q ss_pred HHHHHHhHHHHHHh---------ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHH--------HhhhccCCCCCcccC
Q 012162 22 VFDLVQKGNRAFRE---------SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI--------SQFLKHRPPSASEYR 84 (469)
Q Consensus 22 ~~~~~~~g~~~~~~---------~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~ 84 (469)
...+...|..+... |+|++|+..|++|++++|+++.+|+++|.+|..+ |++
T Consensus 170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~------------ 237 (474)
T 4abn_A 170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS------------ 237 (474)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH------------
T ss_pred HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH------------
Confidence 46778889999999 9999999999999999999999999999999999 999
Q ss_pred ccCCCCCchhHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 85 PLNGLDPTTHAELALKDAEKLLNLQS---NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 85 ~~~~~~~~~~~~~A~~~~~~al~l~p---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
++|+..++++++++| +++.+|+.+|.+|..+|+|++|+..|+++++++|++..+...+..+...++
T Consensus 238 -----------~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 238 -----------QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp -----------HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999988888777776666
Q ss_pred hhh
Q 012162 162 SLI 164 (469)
Q Consensus 162 ~~~ 164 (469)
...
T Consensus 307 ~~~ 309 (474)
T 4abn_A 307 RLT 309 (474)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 76
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.24 E-value=8.8e-12 Score=115.16 Aligned_cols=114 Identities=19% Similarity=0.283 Sum_probs=105.0
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.....+...|..++..|+|++|+..|+++++.+|+++.++.++|.+|..+|++ ++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~ 193 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-----------------------PEAI 193 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH-----------------------HHHH
Confidence 34677888999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC------CCCchhHHHHHHH
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD------PFSNPLQASLQNL 156 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~ 156 (469)
..++++++++|+++.+++.+|.++..+|++++|+..|+++++++ |++..+...+..+
T Consensus 194 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 194 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 8887777666543
No 77
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=2.3e-12 Score=105.51 Aligned_cols=63 Identities=27% Similarity=0.663 Sum_probs=56.3
Q ss_pred cccccccccccccccEEc-cCCCcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhc
Q 012162 176 DDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 242 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~-~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~ 242 (469)
+.+.|+||++.+.+|+++ +|||+||+.||..|+. ..||.||.++. ...+.+|..+.++++.+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~--~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW--IQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS--CSSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc--cccccccHHHHHHHHHHH
Confidence 567999999999999999 9999999999999987 78999999984 357889999999998764
No 78
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.23 E-value=2.6e-11 Score=109.32 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=95.8
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+..++..|..++..|+|++|+..|++++ +| ++.+++++|.+|..+|++ ++|+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~-----------------------~~A~ 57 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNM-----------------------TEAE 57 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 346678899999999999999999999996 34 678999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
..++++++++|+++.+++.+|.+|..+|++++|+..|++++++.|++.
T Consensus 58 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 58 KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999877
No 79
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=3.4e-11 Score=110.27 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=102.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
.+..+..+|..++..|+|++|+..|+++++..|+++ .+++++|.+|+.+|+| ++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~-----------------------~~ 59 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-----------------------PL 59 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH-----------------------HH
Confidence 356788999999999999999999999999999875 6899999999999999 99
Q ss_pred HHHHHHHHhhccccchH---HHHHHHHHHHH------------------HhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 98 ALKDAEKLLNLQSNSMK---SHLLKANALIL------------------LERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~---~~~~~g~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
|+..++++++++|+++. +++.+|.++.. .|++++|+..|+++++..|++..+......+
T Consensus 60 A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 60 AQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 99999999999999875 89999999986 5799999999999999999998776655444
Q ss_pred HH
Q 012162 157 ER 158 (469)
Q Consensus 157 ~~ 158 (469)
..
T Consensus 140 ~~ 141 (225)
T 2yhc_A 140 VF 141 (225)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 80
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.23 E-value=2.3e-11 Score=113.76 Aligned_cols=110 Identities=22% Similarity=0.168 Sum_probs=104.2
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
...+..+...|..++..|+|++|+..|+++++++|+++.++.++|.+|...|++ ++|
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A 96 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF-----------------------DAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH-----------------------HHH
Confidence 345788899999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHH
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 151 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (469)
+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 149 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999875443
No 81
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=4.1e-12 Score=103.31 Aligned_cols=66 Identities=27% Similarity=0.808 Sum_probs=56.6
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHcccC---CCccccccccccCCCcccCcccHHHHHHHhch
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG---NKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 243 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (469)
..+.|+||++.+.+|+.++|||+||+.||..|+... ..||.||.++.. ..+..|..+.++++.+..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~--~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK--RSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT--TTCBCCCSSSHHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH--hhcCccHHHHHHHHHHHH
Confidence 466899999999999999999999999999999754 379999998853 567788888888887654
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=3.1e-11 Score=99.20 Aligned_cols=114 Identities=24% Similarity=0.296 Sum_probs=103.3
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+...|..++..|++++|+..|.++++.+|+++.++..+|.++...|++ ++|+..+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~~ 58 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-----------------------DEAIEYY 58 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCH-----------------------HHHHHHH
Confidence 45677899999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+...+..+...
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 59 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887766665554433
No 83
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=3.5e-12 Score=112.20 Aligned_cols=135 Identities=10% Similarity=0.052 Sum_probs=104.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCC--ch-------
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP--TT------- 93 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------- 93 (469)
..+...|..++..|++++|+..|+++++.+|+++.++.++|.++...|++. .+...++.....+| ..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~----~A~~~~~~a~~~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFE----LAQELLATIPLEYQDNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHH----HHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHH----HHHHHHHHhhhccCChHHHHHHHHH
Confidence 446778889999999999999999999999999999999999998888762 22222333333322 00
Q ss_pred ------hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc--hhHHHHHHHHHhhh
Q 012162 94 ------HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN--PLQASLQNLERTTA 161 (469)
Q Consensus 94 ------~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~ 161 (469)
...+|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++. .++..+..+-..++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 002368889999999999999999999999999999999999999999999864 46666666555443
No 84
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.22 E-value=3.6e-11 Score=116.52 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=109.8
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc----cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI----VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.....|..++..|++++|+..|+++++.+|+++. ++..+|.++...|++ ++|+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~ 292 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP-----------------------VEAI 292 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH-----------------------HHHH
Confidence 3456699999999999999999999999999874 466799999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhhc
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 165 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 165 (469)
..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..++..++...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 358 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999988876543
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=5.3e-12 Score=135.19 Aligned_cols=113 Identities=6% Similarity=-0.091 Sum_probs=106.9
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++..+..+|..++..|+|++|+..|++|++++|+++.+++++|.+|..+|+| ++ +.
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~-----------------------~~-~~ 521 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT-----------------------DE-HK 521 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC-----------------------CT-TC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh-----------------------HH-HH
Confidence 4678889999999999999999999999999999999999999999999999 88 99
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
.++++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+..+.
T Consensus 522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877666654
No 86
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.21 E-value=2.4e-11 Score=127.15 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=110.4
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+..+...|..++..|+|++|+..|++|++++|+++.++.++|.+|..+|++ ++|+
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~ 77 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRH-----------------------AEAA 77 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 34678899999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988777766665555
No 87
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.6e-12 Score=92.97 Aligned_cols=51 Identities=29% Similarity=0.729 Sum_probs=46.0
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
....+.+.|+||++.+.+|+.++|||.||..||..|+.....||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 344567899999999999999999999999999999988889999999874
No 88
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.2e-12 Score=91.02 Aligned_cols=51 Identities=31% Similarity=0.808 Sum_probs=44.7
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcc-cCCCccccccccc
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLF 222 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~-~~~~CP~Cr~~~~ 222 (469)
....+.+.|+||++.+.+|+.++|||+||+.||..|+. ....||.||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 34456789999999999999999999999999999995 4568999999874
No 89
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=91.71 Aligned_cols=51 Identities=35% Similarity=0.858 Sum_probs=44.8
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcc---cCCCccccccccc
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD---RGNKCPLCRAVLF 222 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~---~~~~CP~Cr~~~~ 222 (469)
....+.+.|+||++.+.+|+.++|||+||..||..|+. ....||.||.++.
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 44567789999999999999999999999999999996 3458999999874
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.19 E-value=2.5e-11 Score=115.72 Aligned_cols=138 Identities=12% Similarity=0.084 Sum_probs=112.9
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh------
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH------ 94 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 94 (469)
....+...|..+...|++++|+..|+++++.+|+++.+++++|.++...|++ +.|...++.+...+|...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~----~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRS----EDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH----HHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCH----HHHHHHHHhCchhhcchHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999987 223333444433343211
Q ss_pred ---------HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC--chhHHHHHHHHHhhhh
Q 012162 95 ---------AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS--NPLQASLQNLERTTAS 162 (469)
Q Consensus 95 ---------~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~ 162 (469)
..+|+..++++++++|+++.+++.+|.+|...|++++|+..|+++++.+|++ ..++..+..+-..++.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 1346778899999999999999999999999999999999999999999998 6677777776665543
No 91
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.19 E-value=6.9e-12 Score=102.81 Aligned_cols=67 Identities=30% Similarity=0.725 Sum_probs=55.2
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcccCC-CccccccccccCCCcccCcccHHHHHHH
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLFITPRTCAVSVTLNSIIQK 240 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 240 (469)
....+.+.|+||++.+.+|+.++|||+||+.||..|+..+. .||.||.++.. ..+.++..+.+.+..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~~~~~~~l~~~i~~ 80 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE--NQLFPDNFAKREILS 80 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG--GGCEECHHHHHHHHT
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH--HhcccCHHHHHHHcc
Confidence 45567889999999999999999999999999999998655 89999998853 355566666666654
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=6.4e-11 Score=110.76 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=105.1
Q ss_pred hHHHHHHhHHHHHH--------hccHHHHHHHHHHHhcCCCCCcccc-----------------cchhHHHHHHHhhhcc
Q 012162 21 HVFDLVQKGNRAFR--------ESNFEEAISNYSRANNIKPGDPIVL-----------------GNRSSAYIRISQFLKH 75 (469)
Q Consensus 21 ~~~~~~~~g~~~~~--------~~~~~~A~~~y~~al~~~p~~~~~~-----------------~~~a~~~~~~~~~~~~ 75 (469)
....+...|..++. .|++++|+..|+++++..|+++.+. +++|.+|...|+|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~--- 164 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY--- 164 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH---
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH---
Confidence 35678889999999 9999999999999999999998777 8889999999999
Q ss_pred CCCCCcccCccCCCCCchhHHHHHHHHHHHhhcccc---chHHHHHHHHHHHHH----------hHHHHHHHHHhccccC
Q 012162 76 RPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN---SMKSHLLKANALILL----------ERYDMARDAILSGLQV 142 (469)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~g~~~~~~----------~~~~~A~~~~~~al~~ 142 (469)
++|+..++++++..|+ .+.+++.+|.+|..+ |++++|+..|+++++.
T Consensus 165 --------------------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 165 --------------------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp --------------------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 9999999999999998 677999999999987 9999999999999999
Q ss_pred CCCCchhHHHH---HHHHHhhhhh
Q 012162 143 DPFSNPLQASL---QNLERTTASL 163 (469)
Q Consensus 143 ~p~~~~~~~~~---~~~~~~~~~~ 163 (469)
.|+++.+.... ..+.+.+++.
T Consensus 225 ~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 225 FPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHh
Confidence 99997655544 4444444444
No 93
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.19 E-value=1.4e-11 Score=99.95 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHH
Q 012162 39 EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLL 118 (469)
Q Consensus 39 ~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 118 (469)
++|+..|+++++.+|+++.+++++|.+|...|++ ++|+..++++++++|+++.+|+.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~ 58 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF-----------------------DAALPHLRAALDFDPTYSVAWKW 58 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH-----------------------HHHHHHHHHHHHHCCCcHHHHHH
Confidence 3689999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 119 KANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 119 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
+|.+|..+|++++|+..|+++++++|++.
T Consensus 59 la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 59 LGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999998543
No 94
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=6.4e-11 Score=103.22 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=60.5
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+...|..++..|++++|+..|.++++.+|+++.++.++|.++...|++ ++|+..+
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~~ 99 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY-----------------------DLAVPLL 99 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-----------------------HHHHHHH
Confidence 44445555555555555555555555555555555555555555555555 5555555
Q ss_pred HHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHH
Q 012162 103 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 154 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 154 (469)
+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+...+.
T Consensus 100 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 100 IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 5555555555555555555555555555555555555555555544444333
No 95
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=5.3e-11 Score=103.75 Aligned_cols=118 Identities=13% Similarity=0.142 Sum_probs=108.7
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|..++..|++++|+..|+++++.+|.++.++..+|.++...|++ ++|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 63 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV-----------------------DRGTE 63 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
.++++++++|+++.+++.+|.++...|++++|+..|+++++.+|++..+...+..+....+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 124 (186)
T 3as5_A 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999877766665544433
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.18 E-value=5.3e-11 Score=115.34 Aligned_cols=113 Identities=19% Similarity=0.303 Sum_probs=106.5
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++..+...|..++..|+|++|+..|+++++.+|+++.++.++|.++..+|++ ++|+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 58 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS-----------------------KAALP 58 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCC---CCchhHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP---FSNPLQASLQNL 156 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~ 156 (469)
.++++++++|++..+++.+|.++...|++++|+..|+++++++| ++..+...+..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (359)
T 3ieg_A 59 DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 777776666443
No 97
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=3.7e-11 Score=123.06 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=92.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHH---------HhhhccCCCCCcccCccCCCCCc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI---------SQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
+..+...|..++..|+|++|+..|++|++++|+ +.++.++|.+|..+ |++
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~-------------------- 195 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHV-------------------- 195 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhH--------------------
Confidence 445555566666666666666666666666665 45566666666665 666
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHH--------hHHHHHHHHHhccccCCC---CCchhHHHHHHHHHhhh
Q 012162 93 THAELALKDAEKLLNLQSNSMKSHLLKANALILL--------ERYDMARDAILSGLQVDP---FSNPLQASLQNLERTTA 161 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~ 161 (469)
++|+..++++++++|+++.+|+.+|.+|..+ |++++|+..|+++++++| ++..++..+..+...++
T Consensus 196 ---~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g 272 (474)
T 4abn_A 196 ---MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE 272 (474)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999 999999999999999999 89988888777666555
Q ss_pred hh
Q 012162 162 SL 163 (469)
Q Consensus 162 ~~ 163 (469)
+.
T Consensus 273 ~~ 274 (474)
T 4abn_A 273 SY 274 (474)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.18 E-value=1e-11 Score=103.19 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=84.5
Q ss_pred HHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 012162 46 SRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALIL 125 (469)
Q Consensus 46 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 125 (469)
.++..++|+.+..+.++|.+|++.|+| ++|+..++++++++|+++.+|+.+|.+|..
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 59 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDY-----------------------PTAMRHYNEAVKRDPENAILYSNRAACLTK 59 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCHHHHHHHhhHHHh
Confidence 355678999999999999999999999 999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 126 LERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 126 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
+|++++|+..|+++++++|++..+...+..+-..+++.
T Consensus 60 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCH
Confidence 99999999999999999999998887777766555443
No 99
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.17 E-value=3.4e-11 Score=94.69 Aligned_cols=92 Identities=10% Similarity=0.058 Sum_probs=85.9
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc-cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHH
Q 012162 26 VQKGNRAFRESNFEEAISNYSRANNIKPGDPI-VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 104 (469)
Q Consensus 26 ~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 104 (469)
..+|..++..|+|++|+..|+++++.+|+++. +++++|.+|..+|++ ++|+..+++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~~~~ 60 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW-----------------------QKALNNYQS 60 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHH
Confidence 56899999999999999999999999999999 999999999999999 999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 105 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 105 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
+++++|+++.+++. +.+.+|+..|++++..+|++..
T Consensus 61 al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 61 AIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccccc
Confidence 99999999988754 7889999999999999998764
No 100
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.16 E-value=4.4e-11 Score=111.87 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=88.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
.+.+...|..++..|+|++|+..|+++++.+|+++.++..+|.+|..+|++ ++|+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~ 59 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKY-----------------------DLAQKD 59 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH-----------------------HHHHHH
Confidence 345677888888888888888888888888888888888888888888888 788888
Q ss_pred HHHHhhccccc----hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 102 AEKLLNLQSNS----MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 102 ~~~al~l~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
++++++ .|.+ ..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++
T Consensus 60 ~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 60 IETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC
Confidence 888877 3333 33477788888888888888888888888888777776666655544443
No 101
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.16 E-value=7.6e-12 Score=107.02 Aligned_cols=100 Identities=13% Similarity=-0.000 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHH
Q 012162 40 EAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLK 119 (469)
Q Consensus 40 ~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 119 (469)
.+-..|+++++++|++..+++++|.+++..|+| ++|+..++++++++|+++.+|+.+
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~l 61 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXY-----------------------EDAHXVFQALCVLDHYDSRFFLGL 61 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCCh-----------------------HHHHHHHHHHHHcCcccHHHHHHH
Confidence 334568999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 120 ANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 120 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
|.++..+|+|++|+..|+++++++|++..+...+..+-..+++
T Consensus 62 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE 104 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999888777666555444
No 102
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.16 E-value=4e-11 Score=109.87 Aligned_cols=117 Identities=14% Similarity=0.047 Sum_probs=90.1
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..+...|++++|+..|+++++.+|.++.++..+|.++...|++ ++|+.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 146 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP-----------------------KLALP 146 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH-----------------------HHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 3566677778888888888888888888888888888888888888888888 78888
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
.++++++++|+++.+++.+|.++...|++++|+..|+++++.+|++..+...+..+....
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 206 (243)
T 2q7f_A 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 888888888888888888888888888888888888888888887776666555544433
No 103
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.8e-11 Score=87.25 Aligned_cols=47 Identities=38% Similarity=0.925 Sum_probs=41.0
Q ss_pred CCCCccccccccccccccccEEccCCCcccHHHHHHHcc---cCCCcccc
Q 012162 171 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD---RGNKCPLC 217 (469)
Q Consensus 171 ~~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~---~~~~CP~C 217 (469)
.....+.+.|+||++.+.+|+.++|||+||+.||.+|+. ....||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 344567889999999999999999999999999999997 34579998
No 104
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.15 E-value=1.7e-11 Score=90.83 Aligned_cols=49 Identities=35% Similarity=0.873 Sum_probs=44.7
Q ss_pred Ccccccccccccccccc-------EEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 174 RTDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p-------~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
..+.+.|+||++.+.+| +.++|||+||..||.+|+.....||.||.++.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 34677999999999998 88999999999999999998889999999874
No 105
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.5e-11 Score=95.18 Aligned_cols=53 Identities=28% Similarity=0.787 Sum_probs=45.8
Q ss_pred CCCCccccccccccccccc----cEEccCCCcccHHHHHHHcccC---CCcccccccccc
Q 012162 171 TPERTDDFDCTLCLKLLYE----PITTPCGHSFCRSCLFQSMDRG---NKCPLCRAVLFI 223 (469)
Q Consensus 171 ~~~~~~~~~C~ic~~~~~~----p~~~~cgh~~C~~Ci~~~~~~~---~~CP~Cr~~~~~ 223 (469)
.....+.+.|+||++.+.+ |+.++|||+||..|+..|+... ..||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3445577899999999999 9999999999999999999865 689999998743
No 106
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.14 E-value=5e-11 Score=116.84 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=83.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+...|..+...|++++|+..|+++++++|+++.+|.++|.+|...|++ ++|+..
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~~~ 269 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS-----------------------EEAVEA 269 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 556677788888888888888888888888888888888888888888888 888888
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++
T Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 270 YTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 888888888888888888888888888888888888888887763
No 107
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.14 E-value=7e-11 Score=115.52 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=104.6
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|..+...|++++|+..|+++++++|+++.++.++|.++...|++ ++|+.
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~A~~ 272 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS-----------------------EEAVA 272 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3567778899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC-----------chhHHHHHHHHHhhhhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS-----------NPLQASLQNLERTTASL 163 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~~~~~~~~~~~ 163 (469)
.++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++ ..+...+..+-..++..
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 9999999999999999999999999999999999999999998887 56666666665555443
No 108
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.14 E-value=9.9e-11 Score=119.65 Aligned_cols=108 Identities=24% Similarity=0.338 Sum_probs=102.1
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
....+..+..+|..+++.|+|++|+..|+++++.+| ++.++.++|.+|..+|++ ++
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~-----------------------~~ 57 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDL-----------------------KK 57 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCH-----------------------HH
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhH-----------------------HH
Confidence 345789999999999999999999999999999999 689999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++.+|.+...
T Consensus 58 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 109 (514)
T 2gw1_A 58 VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS 109 (514)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence 9999999999999999999999999999999999999999999999966543
No 109
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.14 E-value=2.5e-11 Score=110.39 Aligned_cols=67 Identities=18% Similarity=0.368 Sum_probs=58.4
Q ss_pred CCccccccccccccccccEEc-cCCCcccHHHHHHHcccC--CCccc--cccccccCCCcccCcccHHHHHHHh
Q 012162 173 ERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRG--NKCPL--CRAVLFITPRTCAVSVTLNSIIQKN 241 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~~~-~cgh~~C~~Ci~~~~~~~--~~CP~--Cr~~~~~~~~~~~~~~~l~~~~~~~ 241 (469)
.....+.||||++.|.+||+. .|||+||+.||..|+..+ ..||+ |++.+.. .++.+|..|.++++.+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~--~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM--RDFVRDPIMELRCKIA 248 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG--GGEEECHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch--hhCCcCHHHHHHHHHH
Confidence 356778999999999999985 999999999999999754 37999 9998743 5899999999999885
No 110
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.13 E-value=7e-11 Score=116.94 Aligned_cols=117 Identities=18% Similarity=0.069 Sum_probs=106.0
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
+...+...|..+...|++++|+..|+++++++|+++.++.++|.++...|++ ++|+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~~ 292 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV-----------------------AEAED 292 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4677888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
.++++++++|+++.++..+|.++...|++++|+..|+++++++|++..+...+..+-...
T Consensus 293 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999888777766554433
No 111
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.13 E-value=1.6e-10 Score=114.37 Aligned_cols=118 Identities=23% Similarity=0.282 Sum_probs=109.0
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..+...|+|++|+..|.++++++|+++.++.++|.+|...|++ ++|+.
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~~ 258 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI-----------------------DLAID 258 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
.++++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+...+..+....+
T Consensus 259 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999888777766554443
No 112
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.13 E-value=7.8e-11 Score=108.71 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=106.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhc--------------------------CCCCCcccccchhHHHHHHHhhhcc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANN--------------------------IKPGDPIVLGNRSSAYIRISQFLKH 75 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~~ 75 (469)
+..+...|..+...|++++|+..|+++++ .+|.++.++.++|.++...|++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 155 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW--- 155 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH---
Confidence 67788899999999999999999999999 7777888999999999999999
Q ss_pred CCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 76 RPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..
T Consensus 156 --------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 156 --------------------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215 (258)
T ss_dssp --------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888777666
Q ss_pred HHHhhhh
Q 012162 156 LERTTAS 162 (469)
Q Consensus 156 ~~~~~~~ 162 (469)
+....++
T Consensus 216 ~~~~~g~ 222 (258)
T 3uq3_A 216 AQIAVKE 222 (258)
T ss_dssp HHHHTTC
T ss_pred HHHHHhh
Confidence 5554443
No 113
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.12 E-value=2.5e-10 Score=106.63 Aligned_cols=109 Identities=6% Similarity=0.023 Sum_probs=100.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCccc----ccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIV----LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
...+...|..++..|+|++|+..|+++++ .|.++.. |.++|.+|..+|++ ++
T Consensus 37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~-----------------------~~ 92 (272)
T 3u4t_A 37 PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQD-----------------------SL 92 (272)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccH-----------------------HH
Confidence 34677889999999999999999999999 6666655 88999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHH
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 154 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 154 (469)
|+..++++++++|+++.++..+|.+|..+|++++|+..|+++++++|++..+...+.
T Consensus 93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988777666
No 114
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.11 E-value=3e-11 Score=98.77 Aligned_cols=65 Identities=29% Similarity=0.715 Sum_probs=50.5
Q ss_pred CccccccccccccccccEEccCCCcccHHHHHHHccc-CCCccccccccccCCCcccCcccHHHHHH
Q 012162 174 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQ 239 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~ 239 (469)
..+.+.|+||++.+.+|+.++|||+||+.||..|+.. +..||.||.++... .-...+..+.+++.
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~~~~~~~l~~~i~ 85 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT-DLESPVKSFLNILN 85 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG-GCBCCCHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh-hccccHHHHHHHHH
Confidence 3457899999999999999999999999999999986 66899999998532 11233444444443
No 115
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.11 E-value=1.6e-10 Score=105.83 Aligned_cols=110 Identities=21% Similarity=0.185 Sum_probs=52.3
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+..+|..++..|+|++|+..|+++++.+|+++.++..+|.++...|++ ++|+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 78 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNEL-----------------------ERALA 78 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3445555555555556666666666666665555555555555555555555 55555
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
.++++++++|++..+++.+|.++...|++++|+..|+++++.+|++..+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 2q7f_A 79 FYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 55555555555555555555555555555555555555555555555444333
No 116
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=2.2e-11 Score=102.67 Aligned_cols=50 Identities=26% Similarity=0.721 Sum_probs=44.7
Q ss_pred CCccccccccccccccccEEccCCCcccHHHHHHHcccCC-Cccccccccc
Q 012162 173 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLF 222 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~-~CP~Cr~~~~ 222 (469)
...+.+.|+||++.+.+|++++|||+||+.||.+|+..+. .||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3457889999999999999999999999999999998665 8999999763
No 117
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.11 E-value=1.9e-10 Score=110.21 Aligned_cols=114 Identities=15% Similarity=0.086 Sum_probs=106.2
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCC---------CCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCC
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIK---------PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 91 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~---------p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (469)
....+...|..++..|+|++|+..|+++++.. |.++.++.++|.+|...|++
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------- 252 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY------------------- 252 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH-------------------
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH-------------------
Confidence 35678889999999999999999999999986 67778999999999999999
Q ss_pred chhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 92 TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 92 ~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+-
T Consensus 253 ----~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 ----AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp ----HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888777643
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=1.1e-10 Score=95.78 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=96.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..+...|++++|+..|.++++.+|.++.++..+|.++...|++ ++|+..
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~ 91 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-----------------------DEAIEY 91 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-----------------------HHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 556777899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
++++++..|++..+++.+|.++...|++++|+..|++++..+|++
T Consensus 92 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999998864
No 119
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.10 E-value=1.7e-10 Score=116.14 Aligned_cols=115 Identities=20% Similarity=0.319 Sum_probs=106.7
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
....++..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.+|..+|++ +
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-----------------------~ 77 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS-----------------------K 77 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCH-----------------------H
Confidence 44566889999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc---hhHHHHH
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN---PLQASLQ 154 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~ 154 (469)
+|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++. .+...+.
T Consensus 78 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 138 (450)
T 2y4t_A 78 AALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988 6655443
No 120
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.10 E-value=1.8e-10 Score=103.95 Aligned_cols=116 Identities=12% Similarity=0.004 Sum_probs=103.3
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+..+...|..++..|++++|+..|+++++.+|+++.++..+|.+|...|++ ++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~ 62 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVN-----------------------DKAQ 62 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCh-----------------------HHHH
Confidence 45778889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHH-hHHHHHHHHHhcccc--CCCCCchhHHHHHHHHH
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILL-ERYDMARDAILSGLQ--VDPFSNPLQASLQNLER 158 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~ 158 (469)
..++++++++|++..+++.+|.++... |++++|+..|+++++ .+|++..+...+..+..
T Consensus 63 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (225)
T 2vq2_A 63 ESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124 (225)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999999999 44544555555444433
No 121
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.7e-11 Score=88.35 Aligned_cols=50 Identities=34% Similarity=0.858 Sum_probs=44.7
Q ss_pred CCcccccccccccccccc-------EEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 173 ERTDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p-------~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
...+...|+||++.+.+| +.++|||.||..||..|+.....||.||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 345678999999999988 88999999999999999988889999998863
No 122
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=2.7e-10 Score=104.20 Aligned_cols=122 Identities=13% Similarity=0.065 Sum_probs=94.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc---cccchhHHHHHHHhhhccCCCCCcccCccCC-CCCchhHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI---VLGNRSSAYIRISQFLKHRPPSASEYRPLNG-LDPTTHAEL 97 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 97 (469)
...+...|..++..|+|++|+..|+++++.+|+++. +++.+|.++..++.. ....+..+.. .-.+...++
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 114 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS------ALQGFFGVDRSDRDPQQARA 114 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------------CCHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh------hhhhhhccchhhcCcHHHHH
Confidence 467888999999999999999999999999999886 789999999875411 0000000000 000122399
Q ss_pred HHHHHHHHhhccccchHHH-----------------HHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 98 ALKDAEKLLNLQSNSMKSH-----------------LLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~-----------------~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
|+..++++++..|+++.++ +.+|.+|...|+|++|+..|+++++..|+++..
T Consensus 115 A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 183 (225)
T 2yhc_A 115 AFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT 183 (225)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence 9999999999999998665 678999999999999999999999999998743
No 123
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.09 E-value=1.9e-10 Score=106.33 Aligned_cols=116 Identities=18% Similarity=0.116 Sum_probs=106.1
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|..++..|+|++|+..|+++++.+|+++.++..+|.+|...|++ ++|+.
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 92 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP-----------------------KLADE 92 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4788899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc--CCCCCchhHHHHHHHHHh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ--VDPFSNPLQASLQNLERT 159 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~ 159 (469)
.++++++++|++..+++.+|.++...|++++|+..|+++++ .+|.+..+...+..+...
T Consensus 93 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 153 (252)
T 2ho1_A 93 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153 (252)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 777776666655554433
No 124
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.09 E-value=3.8e-10 Score=108.14 Aligned_cols=115 Identities=11% Similarity=-0.003 Sum_probs=92.4
Q ss_pred HHHHHHhHHHHHHhc-cHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 22 VFDLVQKGNRAFRES-NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
...+...|..++..| ++++|+..|+++++++|+++.++..+|.++...|++ ++|+.
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~ 146 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH-----------------------DQAMA 146 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH-----------------------HHHHH
Confidence 456677788888888 888888888888888888888888888888888888 88888
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
.++++++++|++..+++.+|.++...|++++|+..|+++++.+|++..+...+..+...
T Consensus 147 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888887666655554433
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.08 E-value=2.5e-10 Score=114.91 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=108.9
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.+...|..++..|++++|+..|+++++++|+++ .++.++|.++.++|++ ++|+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~A~ 315 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP-----------------------VEAI 315 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 345569999999999999999999999999985 4788999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhhhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 164 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 164 (469)
..++++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+...+..++..++...
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999988887776543
No 126
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.08 E-value=1e-10 Score=114.59 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=99.9
Q ss_pred HhHHHHHHhccHHHHHHHHHHHhcCCCC--CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHH
Q 012162 27 QKGNRAFRESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 104 (469)
Q Consensus 27 ~~g~~~~~~~~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 104 (469)
..|..+...|++++|+..|+++++++|+ ++.++.++|.+|...|++ ++|+..+++
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~-----------------------~~A~~~~~~ 238 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF-----------------------NRAIDAFNA 238 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHH
Confidence 4478889999999999999999999999 899999999999999999 999999999
Q ss_pred HhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 105 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 105 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
+++++|+++.+|+.+|.+|...|++++|+..|+++++++|++..+...+..+....++
T Consensus 239 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 239 ALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999998888777776655544
No 127
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.08 E-value=1.2e-10 Score=119.89 Aligned_cols=109 Identities=26% Similarity=0.346 Sum_probs=96.1
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
.....+..+..+|..++..|+|++|+..|+++++.+|+++.++.++|.+|..+|++ +
T Consensus 20 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~ 76 (537)
T 3fp2_A 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL-----------------------E 76 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------H
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-----------------------H
Confidence 34556899999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
+|+..++++++++|+++.+++.+|.++..+|++++|+..|+ ++.++|+....
T Consensus 77 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~ 128 (537)
T 3fp2_A 77 KVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA 128 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence 99999999999999999999999999999999999999996 89999986653
No 128
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.07 E-value=3.8e-10 Score=104.22 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=89.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..++..|++++|+..|.++++.+|+++.++.++|.+|...|++ ++|+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-----------------------~~A~~ 126 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY-----------------------EEAYQ 126 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH-----------------------HHHHH
Confidence 3566777888888888888888888888888888888888888888888888 78888
Q ss_pred HHHHHhh--ccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 101 DAEKLLN--LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 101 ~~~~al~--l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
.++++++ .+|.++.+++.+|.++...|++++|+..|+++++.+|++..+...+..+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 127 RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 8888877 7777777788888888888888888888888888777777666555444333
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.07 E-value=1.7e-11 Score=107.48 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=97.2
Q ss_pred HhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHh
Q 012162 27 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 106 (469)
Q Consensus 27 ~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 106 (469)
..+..++..|+|++|+..|+++++.+|+++.++..+|.+|...|++ ++|+..+++++
T Consensus 15 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~~~~al 71 (177)
T 2e2e_A 15 DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY-----------------------SNSLLAYRQAL 71 (177)
T ss_dssp TTTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHH
T ss_pred hhhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHH
Confidence 3445567889999999999999999999999999999999999999 99999999999
Q ss_pred hccccchHHHHHHHHH-HHHHhHH--HHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 107 NLQSNSMKSHLLKANA-LILLERY--DMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 107 ~l~p~~~~~~~~~g~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
+++|+++.+++.+|.+ +...|++ ++|+..|+++++++|++..+...+..+....+
T Consensus 72 ~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 129 (177)
T 2e2e_A 72 QLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQA 129 (177)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc
Confidence 9999999999999999 8899999 99999999999999999888777766555443
No 130
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=8.4e-11 Score=83.19 Aligned_cols=46 Identities=35% Similarity=0.977 Sum_probs=39.9
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcc---cCCCcccc
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD---RGNKCPLC 217 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~---~~~~CP~C 217 (469)
....+.+.|+||++.+.+|+.++|||+||+.||.+|+. ....||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34556789999999999999999999999999999954 45689988
No 131
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=2.6e-11 Score=85.05 Aligned_cols=47 Identities=30% Similarity=0.683 Sum_probs=40.9
Q ss_pred CccccccccccccccccEEccCCCcccHHHHHHHcccCCCcccccccccc
Q 012162 174 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~ 223 (469)
..+.+.|+||++.+.+|+.++|||+||+.|+.. ....||.||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeec
Confidence 346789999999999999999999999999976 35589999998754
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.06 E-value=5.9e-11 Score=100.36 Aligned_cols=97 Identities=11% Similarity=-0.017 Sum_probs=86.7
Q ss_pred HHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHH
Q 012162 43 SNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANA 122 (469)
Q Consensus 43 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 122 (469)
..|.++++++|++...++.+|.+++..|+| ++|+..+++++.++|+++.+|+.+|.+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~lg~~ 61 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKW-----------------------DDAQKIFQALCMLDHYDARYFLGLGAC 61 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccH-----------------------HHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 578999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 123 LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
|..+|+|++|+..|+++++++|+++.+...+..+-..+++
T Consensus 62 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 62 RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999888777665555443
No 133
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.06 E-value=3.5e-10 Score=86.86 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=80.2
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
..+..+...|..++..|+|++|+..|+++++.+|+++.++.++|.++...|++ ++|+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~ 63 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-----------------------DEAI 63 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH-----------------------HHHH
Confidence 34677889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLE 127 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~ 127 (469)
..++++++++|+++.++..+|.++..+|
T Consensus 64 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 64 EYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988764
No 134
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.06 E-value=2.9e-10 Score=111.10 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=97.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+...|..++..|+|++|+..|+++++.+|+++.++..+|.+|...|++ ++|+..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~~~ 120 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE-----------------------LLAISA 120 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH-----------------------HHHHHH
Confidence 455778899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 151 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (469)
++++++++|+++.+++.+|.++...|++++|+..|+++++++|++.....
T Consensus 121 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 170 (368)
T 1fch_A 121 LRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 99999999999999999999999999999999999999999998876553
No 135
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.05 E-value=5.3e-11 Score=86.06 Aligned_cols=47 Identities=36% Similarity=0.882 Sum_probs=42.9
Q ss_pred ccccccccccccccc-------EEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p-------~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
+.+.|+||++.+.+| +.++|||.||..|+.+|+.....||.||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 457899999999988 78999999999999999988889999999874
No 136
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.05 E-value=9e-11 Score=82.06 Aligned_cols=47 Identities=34% Similarity=0.824 Sum_probs=42.0
Q ss_pred ccccccccccccccc---cEEcc-CCCcccHHHHHHHcccCCCcccccccc
Q 012162 175 TDDFDCTLCLKLLYE---PITTP-CGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~---p~~~~-cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
++...|+||++.+.+ ++.++ |||.||..||.+|+.....||.||.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 456789999999887 77887 999999999999999888999999876
No 137
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.05 E-value=3.6e-10 Score=101.87 Aligned_cols=118 Identities=13% Similarity=0.068 Sum_probs=105.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHH-HhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
...+...|..+...|++++|+..|.++++.+|+++.++.++|.++... |++ ++|+.
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------~~A~~ 98 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP-----------------------AESMA 98 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH-----------------------HHHHH
Confidence 567788899999999999999999999999999999999999999999 999 99999
Q ss_pred HHHHHhh--ccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 101 DAEKLLN--LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 101 ~~~~al~--l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
.++++++ .+|.+..+++.+|.++...|++++|+..|+++++.+|++..+...+..+....++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 99 YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 9999999 7777889999999999999999999999999999999988877766665544433
No 138
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=86.07 Aligned_cols=51 Identities=33% Similarity=0.824 Sum_probs=45.0
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcccCCCcccccccccc
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~ 223 (469)
....+...|+||++.+.+ +.++|||.||..||..|+.....||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 344567899999999999 899999999999999999988899999998853
No 139
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=8.5e-11 Score=85.29 Aligned_cols=47 Identities=36% Similarity=0.822 Sum_probs=40.7
Q ss_pred cccccccccc-ccccc----EEccCCCcccHHHHHHHcccC-CCccccccccc
Q 012162 176 DDFDCTLCLK-LLYEP----ITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~-~~~~p----~~~~cgh~~C~~Ci~~~~~~~-~~CP~Cr~~~~ 222 (469)
+++.|+||++ .+.+| +.++|||+||..||.+|+..+ ..||.||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4578999999 99999 578999999999999997654 57999999874
No 140
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.04 E-value=6e-11 Score=86.96 Aligned_cols=47 Identities=28% Similarity=0.707 Sum_probs=42.5
Q ss_pred ccccccccccccccc-EEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p-~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
....|+||++.+.+| +.++|||.||..|+..|+..+..||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456899999999997 67899999999999999988889999999874
No 141
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.04 E-value=3e-10 Score=108.70 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=105.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..+...|++++|+..|+++++.+|+++.++.++|.++...|++ ++|+..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~ 228 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP-----------------------QEALDA 228 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 566778899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC------------CchhHHHHHHHHHhhhh
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF------------SNPLQASLQNLERTTAS 162 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~ 162 (469)
++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+ +..+...+..+-..++.
T Consensus 229 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 229 YNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999998 56666666555554443
No 142
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=85.03 Aligned_cols=50 Identities=34% Similarity=0.721 Sum_probs=42.9
Q ss_pred CCcccccccccccccc---ccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 173 ERTDDFDCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~---~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.......|+||++.+. .++.++|||.||..||.+|+..+..||.||..+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3456678999998874 4577999999999999999998889999999874
No 143
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.03 E-value=6.4e-10 Score=106.20 Aligned_cols=113 Identities=10% Similarity=0.080 Sum_probs=83.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHH----HhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI----SQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
...+...|..+.+.|++++|+..|+++++.+|++... +++.++..+ |++ ++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~--~l~~a~~~l~~~~~~~-----------------------~e 184 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT--QLATAWVSLAAGGEKL-----------------------QD 184 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHCTTHH-----------------------HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH--HHHHHHHHHHhCchHH-----------------------HH
Confidence 4556667777777777777777777777777765422 333333222 666 88
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...+..+...
T Consensus 185 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888877666554443
No 144
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.03 E-value=8.1e-10 Score=103.07 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=88.5
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..++..|+|++|+..|+++++++|+++.++.++|.+|..+|++ ++|+.
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-----------------------~~A~~ 132 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD-----------------------KLAQD 132 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 3567788999999999999999999999999999999999999999999998 66666
Q ss_pred HHHHHhhccccc--------------------------------------------------------------------
Q 012162 101 DAEKLLNLQSNS-------------------------------------------------------------------- 112 (469)
Q Consensus 101 ~~~~al~l~p~~-------------------------------------------------------------------- 112 (469)
.++++++++|++
T Consensus 133 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 133 DLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence 666666555554
Q ss_pred --hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 113 --MKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 113 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
+.+++.+|.+|...|++++|+..|+++++++|++..
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 467788888888889999999999999998887655
No 145
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.02 E-value=3.6e-10 Score=107.97 Aligned_cols=98 Identities=7% Similarity=-0.016 Sum_probs=91.3
Q ss_pred HHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccc
Q 012162 33 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS 112 (469)
Q Consensus 33 ~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 112 (469)
...|++++|+..|+++++.+|+++.+++++|.++..+|++ ++|+..++++++++|++
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-----------------------~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW-----------------------EAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTC
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCC
Confidence 3458999999999999999999999999999999999999 99999999999999999
Q ss_pred hHHHHHHHHHHHHHhHHHH-HHHHHhccccCCCCCchhHHHH
Q 012162 113 MKSHLLKANALILLERYDM-ARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~~ 153 (469)
+.+++++|.++..+|++++ +..+++++++++|+++.+....
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999987 5689999999999999876543
No 146
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.02 E-value=1.7e-10 Score=87.00 Aligned_cols=52 Identities=25% Similarity=0.607 Sum_probs=44.4
Q ss_pred CCCcccccccccccccccc---EEccCCCcccHHHHHHHcccCCCcccccccccc
Q 012162 172 PERTDDFDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p---~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~ 223 (469)
........|+||++.+.++ +.++|||.||..||.+|+.....||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3445677999999999866 457999999999999999888899999998853
No 147
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.02 E-value=3.6e-10 Score=108.11 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=102.1
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.....+..+|..++..|+|++|+..|+++++.+|+++.++..+|.++...|++ ++|+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~ 75 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD-----------------------GLAI 75 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34667889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHH
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
..++++++++|++..+++.+|.++...|++++|+..|+++++.+|++......+
T Consensus 76 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 129 (327)
T 3cv0_A 76 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN 129 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999887655443
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.02 E-value=5.6e-10 Score=108.95 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=91.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+...|..++..|+|++|+..|++|++++|+++.+|+++|.+|..+|++ ++|+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~ 252 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF-----------------------ELARAD 252 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 678889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHH-HHHHhcccc
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMA-RDAILSGLQ 141 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A-~~~~~~al~ 141 (469)
++++++++|++..++..+|.++..+|++++| ...|++.+.
T Consensus 253 ~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 253 FQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 556776664
No 149
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.01 E-value=1.2e-10 Score=81.39 Aligned_cols=46 Identities=30% Similarity=0.792 Sum_probs=41.3
Q ss_pred cccccccccccccc----cEEccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 176 DDFDCTLCLKLLYE----PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 176 ~~~~C~ic~~~~~~----p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
....|+||++.+.+ ++.++|||.||..||.+|+.....||.||.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 45689999999866 77899999999999999999889999999876
No 150
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=101.32 Aligned_cols=67 Identities=30% Similarity=0.729 Sum_probs=54.5
Q ss_pred CCCccccccccccccccccEEccCCCcccHHHHHHHcccC-CCccccccccccCCCcccCcccHHHHHHH
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQK 240 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 240 (469)
....+.+.|+||++.+.+|+.++|||+||+.||.+|+..+ ..||.||.++.. ..+.++..+.+.+..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE--NQLFPDNFAKREILS 80 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG--GGCEECHHHHHHHHT
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch--hhhhhhHHHHHHHhh
Confidence 3556789999999999999999999999999999999754 489999998843 345566666666554
No 151
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.99 E-value=4.3e-10 Score=115.17 Aligned_cols=105 Identities=10% Similarity=0.160 Sum_probs=94.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+...|..++..|+|++|+..|++|++++|+++.+++++|.+|..+|++ ++|+.
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~-----------------------~eA~~ 95 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF-----------------------RAALR 95 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHH--HHHHhHHHHHHHHHh-----------ccccCCCCCch
Q 012162 101 DAEKLLNLQSNSMKSHLLKANA--LILLERYDMARDAIL-----------SGLQVDPFSNP 148 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~--~~~~~~~~~A~~~~~-----------~al~~~p~~~~ 148 (469)
.++++++++|++..++..+|.+ +...|++++|+..++ ++++++|+...
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 9999999999999999999998 889999999999999 99999987643
No 152
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.99 E-value=2.1e-10 Score=89.24 Aligned_cols=49 Identities=22% Similarity=0.678 Sum_probs=43.4
Q ss_pred Cccccccccccccccc---cEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 174 RTDDFDCTLCLKLLYE---PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~---p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
......|+||++.+.. ++.++|||.||..||..|+.....||.||.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4467789999998877 778999999999999999998889999998863
No 153
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.99 E-value=6.1e-10 Score=116.50 Aligned_cols=107 Identities=14% Similarity=0.011 Sum_probs=101.7
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..+...|+|++|+..|+++++++|+++.++.++|.+|..+|++ ++|+.
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~ 112 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA-----------------------EAAAA 112 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHH---hHHHHHHHHHhccccCCCCCchhH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILL---ERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
.++++++++|+++.+++.+|.++..+ |++++|+..|+++++.+|++....
T Consensus 113 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 113 AYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChH
Confidence 99999999999999999999999999 999999999999999999875544
No 154
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=4.5e-10 Score=107.18 Aligned_cols=106 Identities=15% Similarity=0.030 Sum_probs=89.7
Q ss_pred HHHHHHhHHHHHHh-ccHHHHHHHHHHHhcCCCCC------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 22 VFDLVQKGNRAFRE-SNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 22 ~~~~~~~g~~~~~~-~~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
+..+...|..+... |++++|+.+|++|+++.|.+ ..++.++|.+|..+|+|
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---------------------- 174 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY---------------------- 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH----------------------
Confidence 56778899999996 99999999999999998865 46788999999999999
Q ss_pred HHHHHHHHHHHhhccccchH-------HHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 95 AELALKDAEKLLNLQSNSMK-------SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~~~-------~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
++|+..+++++++.|++.. +|+.+|.++..+|++++|+.+|+++++++|++....
T Consensus 175 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 175 -IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp -HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred -HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 9999999999999987653 688999999999999999999999999999877643
No 155
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2e-10 Score=85.64 Aligned_cols=52 Identities=29% Similarity=0.632 Sum_probs=44.2
Q ss_pred CCCCccccccccccccccccEE---ccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 171 TPERTDDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 171 ~~~~~~~~~C~ic~~~~~~p~~---~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.........|+||++.+.++.. ++|||.||..||.+|+.....||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 3445567799999999987743 499999999999999988889999999874
No 156
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=2.2e-10 Score=85.71 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=43.5
Q ss_pred Ccccccccccccccccc---EEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 174 RTDDFDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p---~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
..+...|+||++.+.++ +.++|||.||..||..|+.....||.||+++.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 34567899999999887 67899999999999999998889999999874
No 157
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.97 E-value=1.7e-10 Score=91.36 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=69.6
Q ss_pred CCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHH
Q 012162 51 IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYD 130 (469)
Q Consensus 51 ~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~ 130 (469)
.+|+++.+++++|.+|+..|+| ++|+..++++++++|+++.+|+.+|.+|..+|+++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 58 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNA-----------------------SRALALFEELVETDPDYVGTYYHLGKLYERLDRTD 58 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred CCccCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 4799999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCchh
Q 012162 131 MARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 131 ~A~~~~~~al~~~p~~~~~ 149 (469)
+|+..|++++++.|.+...
T Consensus 59 ~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 59 DAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhcCCch
Confidence 9999999999998865543
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.96 E-value=1.3e-09 Score=93.37 Aligned_cols=99 Identities=12% Similarity=0.163 Sum_probs=89.9
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..++..|+|++|+..|.++++++|+++.++.++|.++..+|++ ++|+.
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 102 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF-----------------------RAALR 102 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 3667888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHH--HHHHhHHHHHHHHHhccccC
Q 012162 101 DAEKLLNLQSNSMKSHLLKANA--LILLERYDMARDAILSGLQV 142 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~--~~~~~~~~~A~~~~~~al~~ 142 (469)
.++++++++|++..++..++.+ +...|++++|+..+.++..+
T Consensus 103 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 103 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999988555554 88899999999999876543
No 159
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.96 E-value=4.2e-10 Score=84.27 Aligned_cols=50 Identities=30% Similarity=0.687 Sum_probs=40.2
Q ss_pred Ccccccccccccccc--ccEEcc--CCCcccHHHHHHHccc-CCCcccccccccc
Q 012162 174 RTDDFDCTLCLKLLY--EPITTP--CGHSFCRSCLFQSMDR-GNKCPLCRAVLFI 223 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~--~p~~~~--cgh~~C~~Ci~~~~~~-~~~CP~Cr~~~~~ 223 (469)
..+.+.|+||++.+. +++.++ |||+||+.|+..++.. ...||.||+++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 457789999999874 445555 9999999999998854 4689999998753
No 160
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=9.3e-10 Score=104.97 Aligned_cols=106 Identities=12% Similarity=-0.091 Sum_probs=95.6
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC------cccccchhHHHHHH-HhhhccCCCCCcccCccCCCCCch
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
.+..+.+.|..+...|+|++|+.+|++|+++.|.. +.++.++|.+|... |++
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~--------------------- 134 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY--------------------- 134 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH---------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCH---------------------
Confidence 36788899999999999999999999999998764 45788999999995 999
Q ss_pred hHHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 94 HAELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
++|+..+++|+++.|.. ..++..+|.+|..+|+|++|+..|+++++++|++...
T Consensus 135 --~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 135 --AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred --HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999998865 5679999999999999999999999999999987653
No 161
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.94 E-value=1.7e-09 Score=109.72 Aligned_cols=117 Identities=10% Similarity=0.042 Sum_probs=100.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcC---------CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNI---------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
+..+...|..++..|+|++|+..|++|+++ +|.....|.++|.+|..+|++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~-------------------- 110 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL-------------------- 110 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh--------------------
Confidence 566778999999999999999999999986 566677899999999999999
Q ss_pred hhHHHHHHHHHHHhhcc--------ccchHHHHHHHHHHHHH--hHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 93 THAELALKDAEKLLNLQ--------SNSMKSHLLKANALILL--ERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~--------p~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
++|+..+++++++. +..+.++..+|.++... ++|++|+..|++|++++|+++.+...+..+-..+.
T Consensus 111 ---~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 111 ---SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 99999999999874 35678899999888665 58999999999999999999998877766644443
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.91 E-value=2.1e-09 Score=102.07 Aligned_cols=107 Identities=7% Similarity=0.036 Sum_probs=91.2
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++..+...|..++..|+|++|+..|++|++++|+++.+++++|.+|..+|++ ++|+.
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~ 93 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY-----------------------DEAIA 93 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchH-----HH--------------------------HHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 101 DAEKLLNLQSNSMK-----SH--------------------------LLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 101 ~~~~al~l~p~~~~-----~~--------------------------~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
.++++++++|+++. ++ ..++. ...|++++|++.|+++++++|++...
T Consensus 94 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~~~~ 171 (281)
T 2c2l_A 94 NLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDDGHI 171 (281)
T ss_dssp HHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCHHHH
T ss_pred HHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccchhhh
Confidence 99999999997631 11 11122 24789999999999999999987655
Q ss_pred HHH
Q 012162 150 QAS 152 (469)
Q Consensus 150 ~~~ 152 (469)
...
T Consensus 172 ~~~ 174 (281)
T 2c2l_A 172 RAQ 174 (281)
T ss_dssp THH
T ss_pred hhH
Confidence 443
No 163
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.90 E-value=3.5e-09 Score=101.66 Aligned_cols=115 Identities=12% Similarity=-0.054 Sum_probs=72.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc-cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI-VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
...+...|..+...|++++|+..|+++++++|.++. +|.++|.++.+.|++ ++|..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 155 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI-----------------------KSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 345556666666666777777777777777666665 666666666666666 66666
Q ss_pred HHHHHhhccccchHHHHHHHHHHH-HHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALI-LLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
.++++++.+|.+..+|...|.... ..|++++|+..|+++++++|++..+...+..+...
T Consensus 156 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 677777666666666554444432 25666677777777766666666665555544443
No 164
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.90 E-value=3.3e-10 Score=80.50 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=45.2
Q ss_pred ccccccccccccccEEc-cCCCcccHHHHHHHcccCCCccccccccccCCCcccCc
Q 012162 177 DFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVS 231 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~~~-~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 231 (469)
.+.|+||++.|.+||.+ +|||+||+.||.+|+..+..||.+++++.. .++.++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~--~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI--EEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG--GGCEEC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh--hhcEEC
Confidence 47899999999999999 999999999999999877789999999853 344443
No 165
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.90 E-value=1.5e-09 Score=111.65 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=68.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+...|..++..|++++|+..|+++++.+|+ +.++..+|.++...|++ ++|+..
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~-----------------------~~A~~~ 298 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS-----------------------QEFFKF 298 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 445566666666666666666666666666666 56666666666666666 666666
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
++++++++|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 352 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 666666666666666666666666666666666666666666665555444433
No 166
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.90 E-value=1.8e-09 Score=112.79 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=98.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcC------CCCC-cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNI------KPGD-PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~------~p~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
...+...|..+.+.|++++|+..|+++++. +|++ ..+|..+|.+|...|++
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~---------------------- 532 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY---------------------- 532 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH----------------------
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH----------------------
Confidence 456777888888888888888888888887 4543 56788888888888888
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 95 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
++|+..++++++++|+++.+|+.+|.+|...|++++|+..|+++++++|++..+...+..+
T Consensus 533 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 533 -DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp -HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887776654
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.89 E-value=5.7e-10 Score=108.97 Aligned_cols=104 Identities=12% Similarity=0.024 Sum_probs=60.0
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+.+.|..+++.|+|++|+.+|++|++++|+++.+|+++|.+|..+|+| ++|+.++
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~-----------------------~~A~~~l 287 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM-----------------------DSARDDF 287 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 36788999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHH-HHHhHHHHHHHHHhccccCCCCCchh
Q 012162 103 EKLLNLQSNSMKSHLLKANAL-ILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 103 ~~al~l~p~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
+++++++|++..++..++.+. ...+.++++...|.+++..+|+++..
T Consensus 288 ~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 288 RKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp HHTTC-------------------------------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 999999999999999999984 56778889999999999999987653
No 168
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.88 E-value=7e-09 Score=99.53 Aligned_cols=114 Identities=10% Similarity=-0.011 Sum_probs=99.9
Q ss_pred hhHHHHHHhHHHHHH-------hccH-------HHHHHHHHHHhc-CCCCCcccccchhHHHHHHHhhhccCCCCCcccC
Q 012162 20 THVFDLVQKGNRAFR-------ESNF-------EEAISNYSRANN-IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYR 84 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~-------~~~~-------~~A~~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (469)
..+..+...|..+.. .|++ ++|+..|++|++ ++|++..+|.++|.++...|++
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~------------ 115 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY------------ 115 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH------------
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH------------
Confidence 345667777777653 4776 999999999999 7999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHhhccccchH-HHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 85 PLNGLDPTTHAELALKDAEKLLNLQSNSMK-SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 85 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
++|...++++++++|+++. +|..+|.++...|++++|+..|++|++.+|.+..+......+
T Consensus 116 -----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 116 -----------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 177 (308)
T ss_dssp -----------HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999999987 999999999999999999999999999999887665444333
No 169
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.87 E-value=2.3e-09 Score=90.56 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=94.6
Q ss_pred ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHH---hhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcc-c-
Q 012162 36 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS---QFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-S- 110 (469)
Q Consensus 36 ~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-p- 110 (469)
.....+...|.++++.+|.+..+.++.|+++.+.+ ++ .+++..++.+++.+ |
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~-----------------------~~gI~lLe~ll~~~~p~ 68 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDI-----------------------RKGIVLLEELLPKGSKE 68 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHH-----------------------HHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHH-----------------------HHHHHHHHHHHhcCCcc
Confidence 44567778899999989999999999999999876 56 89999999999999 7
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 111 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
++.+++|++|.+++++|+|++|+.+++++|+++|+|..+....+.+++++.+
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999988865
No 170
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.87 E-value=2.2e-09 Score=109.60 Aligned_cols=114 Identities=15% Similarity=0.046 Sum_probs=103.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc------cccchhHHHHH---HHhhhccCCCCCcccCccCCCCCc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIR---ISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
...+...|..++..|++++|+..|+++++.+|+++. ++.++|.++.. .|++
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------------------- 431 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF-------------------- 431 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH--------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH--------------------
Confidence 456777889999999999999999999999888866 88899999999 9999
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 93 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
++|+..++++++++|+++.+++.+|.+|...|++++|+..|+++++++|++..+...+...+.
T Consensus 432 ---~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 432 ---IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988776655444
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.86 E-value=4.7e-09 Score=93.69 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=84.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..++..|+|++|+..|+++++++|+++.+++++|.+|..+|++ ++|+..
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~ 144 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL-----------------------EEAKEN 144 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH-----------------------HHHHHH
Confidence 467889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHH-HHHhccccC
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMAR-DAILSGLQV 142 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~-~~~~~al~~ 142 (469)
++++++++|++..++..++.++..+++++++. ..|.+.+..
T Consensus 145 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 145 LYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999987 555555543
No 172
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.86 E-value=7.2e-10 Score=92.74 Aligned_cols=49 Identities=35% Similarity=0.864 Sum_probs=44.8
Q ss_pred cccccccccccccccc-------EEccCCCcccHHHHHHHcccCCCcccccccccc
Q 012162 175 TDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 223 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p-------~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~~ 223 (469)
.+.+.|+||++.+.+| +.++|||+||..||.+|+.....||.||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3567999999999999 899999999999999999988899999998843
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.85 E-value=4.8e-09 Score=90.38 Aligned_cols=92 Identities=12% Similarity=-0.034 Sum_probs=82.2
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
....+..+...|..++..|+|++|+..|++|++++|+++.+|+++|.+|..+|+| ++
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~-----------------------~~ 115 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKL-----------------------DE 115 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcH-----------------------HH
Confidence 3445678899999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccch-HHHHHHHHHHHHHhHHHHH
Q 012162 98 ALKDAEKLLNLQSNSM-KSHLLKANALILLERYDMA 132 (469)
Q Consensus 98 A~~~~~~al~l~p~~~-~~~~~~g~~~~~~~~~~~A 132 (469)
|+.+++++++++|+++ .+...++.+....+++.++
T Consensus 116 A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 116 AEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 6677778777776666543
No 174
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=5.8e-09 Score=108.87 Aligned_cols=118 Identities=6% Similarity=-0.097 Sum_probs=108.0
Q ss_pred hhHHHHHHhHHHHHHhcc----------HHHHHHHHHHHhcCCCCCcccccchhHHHHHHH--hhhccCCCCCcccCccC
Q 012162 20 THVFDLVQKGNRAFRESN----------FEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS--QFLKHRPPSASEYRPLN 87 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~----------~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~ 87 (469)
+...+|..+|..+...|+ +++|+..|+++++.+|++..+|+.|+.++.+++ +|
T Consensus 61 ~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~--------------- 125 (567)
T 1dce_A 61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW--------------- 125 (567)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH---------------
T ss_pred hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH---------------
Confidence 446778889999988888 999999999999999999999999999999999 77
Q ss_pred CCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-HHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE-RYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 88 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
++|+..++++++++|++..||..+|.++..+| .+++|+++++++++.+|.|..++.....+-..+
T Consensus 126 --------~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 126 --------ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp --------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 99999999999999999999999999999999 999999999999999999998877766654443
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.84 E-value=4.9e-09 Score=106.69 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=85.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+.++|..+++.|+|++|+..|++|++++|+++.+|+++|.+|+.+|+| ++|+.+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~-----------------------~~A~~~ 373 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF-----------------------ESAKGD 373 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCH-----------------------HHHHHH
Confidence 678889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHH-HHhcccc
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARD-AILSGLQ 141 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al~ 141 (469)
++++++++|++..++..+|.++..+|++++|.. .|.+.+.
T Consensus 374 ~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 374 FEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998864 4555543
No 176
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.84 E-value=2e-09 Score=87.50 Aligned_cols=46 Identities=28% Similarity=0.653 Sum_probs=39.3
Q ss_pred ccccccccccccccE------------------EccCCCcccHHHHHHHcc-----cCCCccccccccc
Q 012162 177 DFDCTLCLKLLYEPI------------------TTPCGHSFCRSCLFQSMD-----RGNKCPLCRAVLF 222 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~------------------~~~cgh~~C~~Ci~~~~~-----~~~~CP~Cr~~~~ 222 (469)
+..|+||++.|.+|. .++|||.||..||..|+. ....||+||..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 458999999997764 689999999999999994 4568999999874
No 177
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.84 E-value=6.6e-09 Score=108.53 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=93.3
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..+.+.|++++|+..|+++++++|++..+|..+|.+|.+.|++ ++|+.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~A~~ 428 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH-----------------------DQAIS 428 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3556667788888888888888888888888888888888888888888888 88888
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
.++++++.+|++..+++.+|.+|...|++++|+..|+++++++|++..+...+..+-.
T Consensus 429 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888887776655544433
No 178
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.83 E-value=7.1e-10 Score=91.93 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=66.4
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHH
Q 012162 56 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDA 135 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~ 135 (469)
+.++.++|.++++.|+| ++|+..|++|++++|+++.+|+++|.+|..+|+|++|+..
T Consensus 8 A~a~~~lG~~~~~~~~~-----------------------~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~ 64 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDF-----------------------EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64 (127)
T ss_dssp HHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHH
Confidence 45677899999999999 9999999999999999999999999999999999999999
Q ss_pred HhccccCCCCCchh
Q 012162 136 ILSGLQVDPFSNPL 149 (469)
Q Consensus 136 ~~~al~~~p~~~~~ 149 (469)
|+++++++|++...
T Consensus 65 ~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 65 CEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHhCcccchh
Confidence 99999999987653
No 179
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.83 E-value=1.5e-09 Score=101.28 Aligned_cols=119 Identities=14% Similarity=0.037 Sum_probs=101.7
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCC
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 90 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (469)
...+..+...|..++..|+|++|+..|.+++++ +|....++.++|.+|...|++
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------------------ 101 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY------------------ 101 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH------------------
Confidence 345778889999999999999999999999987 466678999999999999999
Q ss_pred CchhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccC--------CCCCchhHHHHH
Q 012162 91 PTTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV--------DPFSNPLQASLQ 154 (469)
Q Consensus 91 ~~~~~~~A~~~~~~al~l--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~ 154 (469)
++|+..+++++++ +|....+++.+|.+|..+|++++|+..|++++++ +|....+...+.
T Consensus 102 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 176 (283)
T 3edt_B 102 -----KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176 (283)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999998 5888999999999999999999999999999998 554445555554
Q ss_pred HHHHhh
Q 012162 155 NLERTT 160 (469)
Q Consensus 155 ~~~~~~ 160 (469)
.+....
T Consensus 177 ~~~~~~ 182 (283)
T 3edt_B 177 SCYLKQ 182 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 444333
No 180
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.8e-09 Score=88.66 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=77.1
Q ss_pred CCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHH
Q 012162 54 GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMAR 133 (469)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 133 (469)
..+..+..+|..++..|+| ++|+..++++++++|+++.+|+.+|.++..+|+|++|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~ 58 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDW-----------------------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 58 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhcCH-----------------------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHH
Confidence 3456788899999999999 99999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 134 DAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
..|+++++++|++..+...+..+...+++
T Consensus 59 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 59 ADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 99999999999999887777666555443
No 181
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.83 E-value=7.5e-10 Score=82.37 Aligned_cols=43 Identities=30% Similarity=0.839 Sum_probs=39.2
Q ss_pred cccccccccccccccEEccCCCc-ccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
+...|+||++.+.+|+.+||||+ ||..|+..| ..||.||.++.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 45689999999999999999999 999999887 68999999874
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.83 E-value=4.1e-09 Score=83.59 Aligned_cols=87 Identities=21% Similarity=0.154 Sum_probs=80.6
Q ss_pred CCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHH
Q 012162 51 IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYD 130 (469)
Q Consensus 51 ~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~ 130 (469)
++|+++.++..+|.+++..|++ ++|+..++++++++|++..+++.+|.++..+|+++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~-----------------------~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~ 57 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNY-----------------------TESIDLFEKAIQLDPEESKYWLMKGKALYNLERYE 57 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCH-----------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhH-----------------------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHH
Confidence 4789999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCC--CchhHHHHHHHHHhh
Q 012162 131 MARDAILSGLQVDPF--SNPLQASLQNLERTT 160 (469)
Q Consensus 131 ~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~ 160 (469)
+|+..|+++++++|+ +..+...+..+...+
T Consensus 58 ~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 58 EAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 999999999999999 888777776666555
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.82 E-value=2.3e-09 Score=82.20 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=75.9
Q ss_pred CCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHH
Q 012162 54 GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMAR 133 (469)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 133 (469)
.++.+++++|.++...|++ ++|+..++++++++|+++.+++.+|.++...|++++|+
T Consensus 7 ~~~~~~~~la~~~~~~~~~-----------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 63 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDY-----------------------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHccCH-----------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 3567888999999999999 99999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCchhHHHHHHHHHh
Q 012162 134 DAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
..|+++++++|++..+...+..+...
T Consensus 64 ~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 64 EYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 99999999999999888777666543
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.82 E-value=6.3e-09 Score=108.59 Aligned_cols=119 Identities=10% Similarity=-0.045 Sum_probs=109.1
Q ss_pred hhhHHHHHHhHHHHHHhc--cHHHHHHHHHHHhcCCCCCcccccchhHHHHHHH-hhhccCCCCCcccCccCCCCCchhH
Q 012162 19 YTHVFDLVQKGNRAFRES--NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
.+...+|..+|..+.+.| +|++|++.++++++++|.+..+|.+|+.+...++ .+
T Consensus 104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~----------------------- 160 (567)
T 1dce_A 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP----------------------- 160 (567)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH-----------------------
T ss_pred CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCCh-----------------------
Confidence 345778889999999999 7799999999999999999999999999999999 78
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHH--------------hHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILL--------------ERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
++++++++++++.+|++..||+.+|.++..+ +.+++|++++.+|+.++|+|..++..+.-+-...
T Consensus 161 ~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 9999999999999999999999999999886 8899999999999999999999998887765543
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.81 E-value=5.9e-09 Score=82.98 Aligned_cols=84 Identities=20% Similarity=0.164 Sum_probs=74.2
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHH
Q 012162 56 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDA 135 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~ 135 (469)
+.++.++|.+++..|+| ++|+..++++++++|+++.+++.+|.++..+|++++|+..
T Consensus 4 ~~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 60 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLY-----------------------REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60 (111)
T ss_dssp HHHHHHHHHHHHTTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45678899999999999 9999999999999999999999999999999999999999
Q ss_pred HhccccCCCCC------chhHHHHHHHHHhhhh
Q 012162 136 ILSGLQVDPFS------NPLQASLQNLERTTAS 162 (469)
Q Consensus 136 ~~~al~~~p~~------~~~~~~~~~~~~~~~~ 162 (469)
|+++++++|++ ..+...+..+...++.
T Consensus 61 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 61 CQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998 5555555555555553
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.80 E-value=5.5e-09 Score=84.88 Aligned_cols=90 Identities=10% Similarity=0.018 Sum_probs=79.7
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
....+..+...|..++..|+|++|+..|+++++++|+++.+++++|.++..+|++ ++
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~ 79 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY-----------------------EQ 79 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH-----------------------HH
Confidence 3456788999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
|+..++++++++|+++... .|..|+..|.+.+.
T Consensus 80 A~~~~~~al~~~p~~~~~~-----------~~~~ai~~~~~~l~ 112 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQ-----------SYKQAILFYADKLD 112 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHH-----------HTHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCCCcHHHH-----------HHHHHHHHHHHHHH
Confidence 9999999999999997653 45666776666553
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.79 E-value=1.6e-08 Score=100.01 Aligned_cols=94 Identities=14% Similarity=0.178 Sum_probs=88.7
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
...+..+...|..+++.|+|++|+.+|++|++++|+++.+|+++|.+|..+|+| ++|
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~eA 326 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY-----------------------DQA 326 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCH-----------------------HHH
Confidence 345678889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHH
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDA 135 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~ 135 (469)
+.++++|++++|++..++..++.++..++++++|...
T Consensus 327 ~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 327 LADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988654
No 188
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.79 E-value=9.9e-09 Score=79.99 Aligned_cols=86 Identities=13% Similarity=0.075 Sum_probs=72.0
Q ss_pred CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHH
Q 012162 52 KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDM 131 (469)
Q Consensus 52 ~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~ 131 (469)
+|+++.++..+|.+++..++- ...++|...++++++++|+++.+++.+|.+++..|+|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~--------------------~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~ 61 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQ--------------------AMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQE 61 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT--------------------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCC--------------------CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHH
Confidence 688999999999999766551 001899999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCchhHHHHHHHH
Q 012162 132 ARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 132 A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
|+..|+++++.+|.++........+.
T Consensus 62 Ai~~w~~~l~~~p~~~~~~~i~~~I~ 87 (93)
T 3bee_A 62 AIDTWVLLLDSNDPNLDRVTIIESIN 87 (93)
T ss_dssp HHHHHHHHHTCCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 99999999999999655443333333
No 189
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=3e-09 Score=80.60 Aligned_cols=47 Identities=26% Similarity=0.661 Sum_probs=40.2
Q ss_pred cccccccccccccc--------------cEEc-cCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYE--------------PITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~--------------p~~~-~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
+...|+||++.+.+ ++.+ +|||.||..||.+|+.....||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 45579999998876 4455 59999999999999998889999999874
No 190
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=7.8e-09 Score=84.25 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=81.7
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..++..|++++|+..|.++++.+|+++.++..+|.++..+|++ ++|+.
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 101 (131)
T 2vyi_A 45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKH-----------------------VEAVA 101 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 3567788999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERY 129 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~ 129 (469)
.++++++++|+++.+++.+|.++..+|++
T Consensus 102 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 102 YYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998875
No 191
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.78 E-value=7.6e-09 Score=84.84 Aligned_cols=83 Identities=11% Similarity=0.006 Sum_probs=74.9
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHH
Q 012162 57 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAI 136 (469)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~ 136 (469)
..++.+|.+++..|++ ++|+..++++++++|+++.+|+.+|.++..+|++++|+..|
T Consensus 18 ~~~~~~g~~~~~~g~~-----------------------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 74 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANL-----------------------AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74 (121)
T ss_dssp SCHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567889999999999 99999999999999999999999999999999999999999
Q ss_pred hccccCCCCCchhHHHHHHHHHhhhh
Q 012162 137 LSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 137 ~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
+++++++|++..+...+..+....+.
T Consensus 75 ~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 75 NHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999888777665554443
No 192
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.78 E-value=5.6e-09 Score=103.66 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=103.7
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
...+..+...|..++..|+|++|+..|+++++++|+++ .++..+|.+|..+|++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~---------------------- 102 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY---------------------- 102 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCH----------------------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCH----------------------
Confidence 46678888999999999999999999999999999987 5889999999999999
Q ss_pred HHHHHHHHHHHhhc------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC------CCCchhHHHHHHHHHhhhh
Q 012162 95 AELALKDAEKLLNL------QSNSMKSHLLKANALILLERYDMARDAILSGLQVD------PFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 95 ~~~A~~~~~~al~l------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~ 162 (469)
++|+..+++++++ +|....+++.+|.+|...|++++|+..|++++++. |....+...+..+....+.
T Consensus 103 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 103 -NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 9999999999998 78889999999999999999999999999999883 3333344444444444333
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.76 E-value=1.1e-08 Score=87.29 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=65.3
Q ss_pred hhHHHHHHhHHHHHHhccH----------HHHHHHHHHHhcCCCCCcccccchhHHHHHHH-----------hhhccCCC
Q 012162 20 THVFDLVQKGNRAFRESNF----------EEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-----------QFLKHRPP 78 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~----------~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~~~~~ 78 (469)
.+++.+...|..+...+++ ++|+..|++||+++|+++.+|+++|.+|..+| +|
T Consensus 34 ~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~------ 107 (158)
T 1zu2_A 34 LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNF------ 107 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccH------
Confidence 3578888999999988775 59999999999999999999999999999886 77
Q ss_pred CCcccCccCCCCCchhHHHHHHHHHHHhhccccchH
Q 012162 79 SASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 114 (469)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 114 (469)
++|+..|++|++++|++..
T Consensus 108 -----------------~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 108 -----------------DLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp -----------------HHHHHHHHHHHHHCTTCHH
T ss_pred -----------------HHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999853
No 194
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=1.2e-08 Score=83.78 Aligned_cols=85 Identities=11% Similarity=0.066 Sum_probs=80.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..++..|++++|+..|+++++.+|+++.++.++|.++..+|++ ++|+.
T Consensus 49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 105 (133)
T 2lni_A 49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY-----------------------TKAMD 105 (133)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH-----------------------HHHHH
Confidence 3677888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLER 128 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~ 128 (469)
.++++++++|++..+++.+|.++...|+
T Consensus 106 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 106 VYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987764
No 195
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=1.3e-08 Score=87.82 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=76.6
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
++..+...|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++ ++|+.
T Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~ 100 (164)
T 3sz7_A 44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY-----------------------KGAKE 100 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-----------------------HHHHH
Confidence 4677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALIL 125 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~ 125 (469)
.++++++++|++..+|+.+|.....
T Consensus 101 ~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 101 AYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999988888876543
No 196
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.75 E-value=3.4e-09 Score=102.83 Aligned_cols=45 Identities=33% Similarity=0.792 Sum_probs=41.9
Q ss_pred cccccccccccccEEccCCCcccHHHHHHHcc-cCCCccccccccc
Q 012162 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLF 222 (469)
Q Consensus 178 ~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~-~~~~CP~Cr~~~~ 222 (469)
..|+||++.+.+|+.++|||.||..|+..|+. ....||.||.++.
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 68999999999999999999999999999998 6678999999874
No 197
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.75 E-value=8.9e-09 Score=95.88 Aligned_cols=101 Identities=17% Similarity=0.042 Sum_probs=94.1
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCC
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 90 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (469)
...+..+...|..+...|+|++|+..|.+++++ +|....++.++|.+|..+|++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------ 143 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA------------------ 143 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH------------------
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH------------------
Confidence 345778889999999999999999999999998 467788999999999999999
Q ss_pred CchhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 91 PTTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 91 ~~~~~~~A~~~~~~al~l--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
++|+..+++++++ +|....++..+|.+|...|++++|+..|++++++
T Consensus 144 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 144 -----EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp -----HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999 8888999999999999999999999999999986
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.74 E-value=1.6e-08 Score=79.77 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=72.2
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
.++..+...|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++ ++|+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~ 61 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT-----------------------DDAI 61 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34678899999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchH--HHHHHHHHHHHHh
Q 012162 100 KDAEKLLNLQSNSMK--SHLLKANALILLE 127 (469)
Q Consensus 100 ~~~~~al~l~p~~~~--~~~~~g~~~~~~~ 127 (469)
..+++++++.|++.. +...+...+...+
T Consensus 62 ~~~~~al~l~~~~~~~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 62 DTYAQGIEVAREEGTQKDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCchhHHHHHHHHHHHcc
Confidence 999999999876543 3334444444333
No 199
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.74 E-value=3.1e-09 Score=76.47 Aligned_cols=48 Identities=23% Similarity=0.479 Sum_probs=43.1
Q ss_pred ccccccccccccccccEEc--cCCCc-ccHHHHHHHcccCCCccccccccc
Q 012162 175 TDDFDCTLCLKLLYEPITT--PCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~--~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.+...|.||++...+++.+ ||||. ||..|+..+...+..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4566899999999999977 99999 899999999988889999999873
No 200
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.74 E-value=3.4e-09 Score=75.97 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=42.7
Q ss_pred ccccccccccccccccEEc--cCCCc-ccHHHHHHHcccCCCccccccccc
Q 012162 175 TDDFDCTLCLKLLYEPITT--PCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~--~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.....|+||++...+++.+ ||||. ||..|+..+...+..||.||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3456899999999999887 99999 999999999888889999999873
No 201
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.73 E-value=1.2e-08 Score=97.25 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=95.0
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
.+..+...|..++..|+|++|+..|+++++.+|+++ .++..+|.+|...|++ +
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------------~ 60 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY-----------------------A 60 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCH-----------------------H
Confidence 456788999999999999999999999999999984 6888999999999999 9
Q ss_pred HHHHHHHHHhhc------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 97 LALKDAEKLLNL------QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 97 ~A~~~~~~al~l------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
+|+..+++++++ .|....+++.+|.++...|++++|+..|++++++.+...
T Consensus 61 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 117 (338)
T 3ro2_A 61 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999988 667788999999999999999999999999999877543
No 202
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=9.8e-09 Score=98.54 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=77.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
+..+...|..+.. |+|++|+.+|++|+++.|.. ..++.++|.+|..+|+|
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------------------- 171 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF----------------------- 171 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH-----------------------
Confidence 5566677777777 88888888888888876653 45677788888888888
Q ss_pred HHHHHHHHHHhhccccc------hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 96 ELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
++|+..+++++++.|++ ..+++.+|.++..+|++++|+..|++++ ++|+....
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 88888888888876544 2367777778888888888888888888 88876543
No 203
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.72 E-value=3.1e-08 Score=95.59 Aligned_cols=115 Identities=10% Similarity=-0.041 Sum_probs=104.5
Q ss_pred hhhHHHHHHhHHHHHHhc--cHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHh-hhccCCCCCcccCccCCCCCchhH
Q 012162 19 YTHVFDLVQKGNRAFRES--NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
.++...+..++..+...| +|++++..++++++.+|.|..+|.+|+.+...+|. +
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~----------------------- 161 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP----------------------- 161 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-----------------------
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCH-----------------------
Confidence 345778888898888888 49999999999999999999999999999999887 5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHH--------------hHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILL--------------ERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
++++..++++++.+|.|..||..++.++..+ +.++++++.+.+++..+|+|..+...+.-+
T Consensus 162 ~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 162 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 236 (331)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999888 789999999999999999999998765443
No 204
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=1.9e-08 Score=96.37 Aligned_cols=119 Identities=8% Similarity=-0.076 Sum_probs=107.3
Q ss_pred hhHHHHHHhHHHH----HHh---ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCc
Q 012162 20 THVFDLVQKGNRA----FRE---SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 20 ~~~~~~~~~g~~~----~~~---~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
+....+..++..+ ... +++++++..++++++.+|.+..+|+.|+.+...++.+
T Consensus 101 k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~-------------------- 160 (306)
T 3dra_A 101 KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH-------------------- 160 (306)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT--------------------
T ss_pred ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc--------------------
Confidence 3456677777777 555 7899999999999999999999999999999999988
Q ss_pred hhHH--HHHHHHHHHhhccccchHHHHHHHHHHHHHhH------HHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 93 THAE--LALKDAEKLLNLQSNSMKSHLLKANALILLER------YDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 93 ~~~~--~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
+ +++..++++++.+|.|..||..++.++..+|+ ++++++.+++++..+|+|..+...+..+-...+
T Consensus 161 ---~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 161 ---NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp ---TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred ---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 6 99999999999999999999999999999988 999999999999999999999988877766554
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.72 E-value=2.1e-08 Score=78.37 Aligned_cols=69 Identities=23% Similarity=0.228 Sum_probs=65.7
Q ss_pred ccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchH-HHHHHHHHHHHHhHHHHHHHHHh
Q 012162 59 LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK-SHLLKANALILLERYDMARDAIL 137 (469)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~ 137 (469)
.+++|.+++..|+| ++|+..++++++++|+++. +++.+|.+|..+|++++|+..|+
T Consensus 3 ~~~~a~~~~~~~~~-----------------------~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 3 QLKTIKELINQGDI-----------------------ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp THHHHHHHHHHTCH-----------------------HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45688999999999 9999999999999999999 99999999999999999999999
Q ss_pred ccccCCCCCchhH
Q 012162 138 SGLQVDPFSNPLQ 150 (469)
Q Consensus 138 ~al~~~p~~~~~~ 150 (469)
++++++|++..+.
T Consensus 60 ~al~~~p~~~~~~ 72 (99)
T 2kc7_A 60 SAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHCTTSTHHH
T ss_pred HHHhcCCCcHHHH
Confidence 9999999999876
No 206
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=1.8e-08 Score=88.14 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccc--hH
Q 012162 37 NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS--MK 114 (469)
Q Consensus 37 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~--~~ 114 (469)
+..+|+..|+++++.+|+++.+++++|.++...|++ ++|+..++++++++|++ +.
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-----------------------~~A~~~~~~~l~~~p~~~~~~ 145 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRD-----------------------EEALELLWNILKVNLGAQDGE 145 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHTTCTTTTTTH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH-----------------------HHHHHHHHHHHHhCcccChHH
Confidence 334467777777788888888888999999999999 99999999999999986 66
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 115 SHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 115 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
+++.+|.++..+|++++|+..|++++.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999999998864
No 207
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=1.4e-08 Score=84.30 Aligned_cols=89 Identities=10% Similarity=-0.006 Sum_probs=79.5
Q ss_pred cCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHH
Q 012162 50 NIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERY 129 (469)
Q Consensus 50 ~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~ 129 (469)
..+|.++..+..+|.+++..|+| ++|+..++++++++|+++.+++.+|.++..+|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 59 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKY-----------------------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP 59 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CCccccHHHHHHHHHHHHHhCcH-----------------------HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH
Confidence 45677889999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 130 DMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 130 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
++|+..|+++++++|++..+...+..+-..++
T Consensus 60 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 60 EQALADCRRALELDGQSVKAHFFLGQCQLEME 91 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 99999999999999999888777766655444
No 208
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.70 E-value=9.5e-09 Score=97.35 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=93.7
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCC
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 90 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (469)
...+..+...|..++..|++++|+..|++++++ .|....++.++|.+|..+|++
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------ 211 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF------------------ 211 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH------------------
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH------------------
Confidence 345677888999999999999999999999998 677778999999999999999
Q ss_pred CchhHHHHHHHHHHHhhc-------------------------------------------------cccchHHHHHHHH
Q 012162 91 PTTHAELALKDAEKLLNL-------------------------------------------------QSNSMKSHLLKAN 121 (469)
Q Consensus 91 ~~~~~~~A~~~~~~al~l-------------------------------------------------~p~~~~~~~~~g~ 121 (469)
++|+..+++++++ +|..+.+++.+|.
T Consensus 212 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~ 286 (311)
T 3nf1_A 212 -----KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286 (311)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 9999999999974 5778889999999
Q ss_pred HHHHHhHHHHHHHHHhccccCCCC
Q 012162 122 ALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 122 ~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
+|...|++++|+..|++++++.|.
T Consensus 287 ~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 287 LYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998775
No 209
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=3.1e-09 Score=79.24 Aligned_cols=43 Identities=30% Similarity=0.839 Sum_probs=38.0
Q ss_pred cccccccccccccccEEccCCCc-ccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
+...|+||++.+.+|+.+||||. ||..|+... ..||.||.++.
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceec
Confidence 45689999999999999999999 999999643 68999999874
No 210
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.70 E-value=1.6e-08 Score=99.80 Aligned_cols=121 Identities=9% Similarity=0.023 Sum_probs=99.6
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc-------ccccchhHHHHHHHhhhccCCCCCcccCccCCCC
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 90 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (469)
....+..+...|..++..|++++|+.+|.+|+++.+... .++.++|.+|..+|+|
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------------ 200 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQY------------------ 200 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCH------------------
Confidence 344678889999999999999999999999999865544 4788999999999999
Q ss_pred CchhHHHHHHHHHHHhhccccch------HHHHHHHHHHHHHhHHHHHHHHHhccccC-----C-CCCchhHHHHHHHHH
Q 012162 91 PTTHAELALKDAEKLLNLQSNSM------KSHLLKANALILLERYDMARDAILSGLQV-----D-PFSNPLQASLQNLER 158 (469)
Q Consensus 91 ~~~~~~~A~~~~~~al~l~p~~~------~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~-p~~~~~~~~~~~~~~ 158 (469)
++|+..+++++++.+... .+++++|.+|..+|++++|+..|++++++ + |....+...+..+-.
T Consensus 201 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 201 -----EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 999999999999865443 58999999999999999999999999994 5 555555555555444
Q ss_pred hhh
Q 012162 159 TTA 161 (469)
Q Consensus 159 ~~~ 161 (469)
.++
T Consensus 276 ~~g 278 (383)
T 3ulq_A 276 KLG 278 (383)
T ss_dssp HTT
T ss_pred HCC
Confidence 433
No 211
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=9.6e-09 Score=97.78 Aligned_cols=102 Identities=15% Similarity=0.046 Sum_probs=89.0
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC-------CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCc
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNI-------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~-------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
..+..+...|..++..|+|++|+.+|++|++. .+....+++++|.+|..+|+|
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-------------------- 212 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-------------------- 212 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH--------------------
Confidence 34567889999999999999999999999943 233446899999999999999
Q ss_pred hhHHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHh-HHHHHHHHHhccccCCC
Q 012162 93 THAELALKDAEKLLNLQSNS------MKSHLLKANALILLE-RYDMARDAILSGLQVDP 144 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p~~------~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p 144 (469)
++|+..+++++++.+.. +.+|+.+|.+|..+| .+++|+..|++|+.+..
T Consensus 213 ---~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 213 ---EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp ---HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 99999999999987655 789999999999999 57999999999997643
No 212
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.69 E-value=1.2e-08 Score=86.24 Aligned_cols=103 Identities=25% Similarity=0.233 Sum_probs=91.6
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc------ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCc
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
...+..+...|..++..|+|++|+..|.+++++.+... .++.++|.+|...|++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------------- 65 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF-------------------- 65 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH--------------------
Confidence 34577889999999999999999999999999876544 4888999999999999
Q ss_pred hhHHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 93 THAELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
++|+..+++++++.+.. ..+++.+|.++...|++++|+..+++++++.+
T Consensus 66 ---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 66 ---ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999987653 67899999999999999999999999998744
No 213
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.68 E-value=3e-08 Score=100.42 Aligned_cols=125 Identities=12% Similarity=-0.004 Sum_probs=98.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..+...|++++|+..|.+|++.+|+++.++.++|.+|...+....... ..............+.|+.
T Consensus 246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~----~~~~~~~~~~~~~~~~A~~ 321 (472)
T 4g1t_A 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR----ENGMYGKRKLLELIGHAVA 321 (472)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHhhHHHHHH
Confidence 356677889999999999999999999999999999999999999876544311000 0000000000112378999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
.++++++++|.+..+++.+|.+|...|++++|+..|+++++++|++...
T Consensus 322 ~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 9999999999999999999999999999999999999999999876553
No 214
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.68 E-value=3.9e-08 Score=92.09 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=95.2
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHH----HHhhhccCCCCCcccCccCCCCCchhH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
.++..+...|..++..|++++|+..|+++++ |+++.+++++|.+|.. .+++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~----------------------- 58 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNL----------------------- 58 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCH-----------------------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCH-----------------------
Confidence 3467788999999999999999999999998 7788999999999999 8999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHH----HhHHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
++|+..++++++++ ++.+++.+|.+|.. .+++++|+.+|+++++.+ +..+...+..+-.
T Consensus 59 ~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 59 KKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYH 121 (273)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH
Confidence 99999999999986 78999999999999 999999999999999874 6666555555443
No 215
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=3.2e-08 Score=94.80 Aligned_cols=116 Identities=7% Similarity=-0.132 Sum_probs=98.2
Q ss_pred HHHHHHhHHHHHHhc--cHHHHHHHHHHHhcCCCCCcccccchhHHH----HHH---HhhhccCCCCCcccCccCCCCCc
Q 012162 22 VFDLVQKGNRAFRES--NFEEAISNYSRANNIKPGDPIVLGNRSSAY----IRI---SQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
..++..+|..+...| ++++|+..+++++..+|++..+|+.|+.++ ..+ +++
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~-------------------- 126 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP-------------------- 126 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT--------------------
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH--------------------
Confidence 566777788887777 888888888888888888888888888888 333 344
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHH--HHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 93 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYD--MARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
.+++..++++++.+|++..+|+.++.++..+|.++ ++++.++++++.+|.|..+......+-..+
T Consensus 127 ---~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 127 ---YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred ---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999 999999999999999998877665554433
No 216
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.67 E-value=1.6e-08 Score=99.76 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=95.4
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
..+..+...|..++..|+|++|+..|+++++++|+++ .++..+|.+|...|++
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~----------------------- 63 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY----------------------- 63 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCH-----------------------
Confidence 3467788999999999999999999999999999984 6788999999999999
Q ss_pred HHHHHHHHHHhhc------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 96 ELALKDAEKLLNL------QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 96 ~~A~~~~~~al~l------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
++|+..+++++++ .|....+++.+|.++..+|++++|+..|++++++.|..
T Consensus 64 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999988 56778899999999999999999999999999987754
No 217
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=3.3e-08 Score=94.05 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=86.4
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc------cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
.+...|..+...|+|++|+.+|.+|+++.+.... ++.++|.+|..+|+| ++
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-----------------------~~ 173 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL-----------------------KK 173 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 4445788888899999999999999997665443 689999999999999 99
Q ss_pred HHHHHHHHhh-------ccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 98 ALKDAEKLLN-------LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 98 A~~~~~~al~-------l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
|+..++++++ ..+....+++++|.+|..+|+|++|+..+++|+++.+..
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 174 GIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 9999999994 345566799999999999999999999999999987644
No 218
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.66 E-value=6.2e-08 Score=93.98 Aligned_cols=127 Identities=9% Similarity=-0.078 Sum_probs=100.5
Q ss_pred hhHHHHHHhHHHHHHh-c-cHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 20 THVFDLVQKGNRAFRE-S-NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~-~-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
+....+..++..+... + ++++++..++++++.+|.|..+|..|+.+...++.+. ........+
T Consensus 121 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~---------------~~~~~~~~e 185 (349)
T 3q7a_A 121 KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG---------------RISEAQWGS 185 (349)
T ss_dssp CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT---------------CCCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc---------------ccchhhHHH
Confidence 3456667777777666 6 7778888888888888888888888888887777770 000111248
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhH-------HHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANALILLER-------YDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
++..++++++.+|.|..||..++.++..+++ ++++++.+++++.++|+|..+...+.-+-...+
T Consensus 186 ELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 186 ELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999886 899999999999999999999988776655443
No 219
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=3.4e-08 Score=92.80 Aligned_cols=109 Identities=11% Similarity=-0.100 Sum_probs=89.8
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCC-CCC-cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIK-PGD-PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~-p~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
..+.+|..+++.++|++|+..|+++++.. |.. ..+++++|.++..+|++ ++|+..
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~-----------------------~eAl~~ 193 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF-----------------------TEAERR 193 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 66788889999999999999998887753 221 35788999999999999 999999
Q ss_pred HHHHhhcc--cc-chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 102 AEKLLNLQ--SN-SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 102 ~~~al~l~--p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
+++++.-. |. .+.+++++|.++..+|+.++|...|+++++.+|+ ..+...+...
T Consensus 194 l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 194 LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 99998654 55 6789999999999999999999999999999998 7766665443
No 220
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.63 E-value=1.5e-08 Score=86.53 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=71.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcC-------CCCCcccc----cchhHHHHHHHhhhccCCCCCcccCccCCC
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNI-------KPGDPIVL----GNRSSAYIRISQFLKHRPPSASEYRPLNGL 89 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~-------~p~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (469)
++..|.++|..+.+.|+|++|+..|++||++ +|+++.+| +++|.++..+|++
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~----------------- 118 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG----------------- 118 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH-----------------
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH-----------------
Confidence 4568999999999999999999999999999 99999999 9999999999999
Q ss_pred CCchhHHHHHHHHHHHhhccccchHHHHHHHHH
Q 012162 90 DPTTHAELALKDAEKLLNLQSNSMKSHLLKANA 122 (469)
Q Consensus 90 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 122 (469)
++|+.+|+++++++|++...+-.+..+
T Consensus 119 ------eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 119 ------AEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp ------HHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ------HHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999999986654444333
No 221
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.63 E-value=1.9e-08 Score=95.32 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=96.0
Q ss_pred hhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCccC
Q 012162 16 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 87 (469)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 87 (469)
++....+..+...|..++..|+|++|+..|++++++ .|....++..+|.+|...|++
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------------- 85 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY--------------- 85 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH---------------
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH---------------
Confidence 445567889999999999999999999999999995 677788999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 88 GLDPTTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 88 ~~~~~~~~~~A~~~~~~al~l--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
++|+..+++++++ +|....+++.+|.+|...|++++|+..|++++++.
T Consensus 86 --------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 86 --------KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141 (311)
T ss_dssp --------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 9999999999988 47788899999999999999999999999999874
No 222
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=2.4e-08 Score=94.94 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=88.6
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHh---cCCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRAN---NIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al---~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
.+..+...|..++..|+|++|+.+|++|+ +..|++. .+++++|.+|..+|+|
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y--------------------- 212 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY--------------------- 212 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH---------------------
Confidence 46788899999999999999999999999 4455543 6899999999999999
Q ss_pred hHHHHHHHHHHHhhcccc------chHHHHHHHHHHHHHhHHHHH-HHHHhccccCC
Q 012162 94 HAELALKDAEKLLNLQSN------SMKSHLLKANALILLERYDMA-RDAILSGLQVD 143 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~------~~~~~~~~g~~~~~~~~~~~A-~~~~~~al~~~ 143 (469)
++|+..+++++++.++ ...+|+.+|.+|..+|++++| ..+|++|+.+.
T Consensus 213 --~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 213 --EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp --HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999999998754 278999999999999999999 78899998764
No 223
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.63 E-value=2.4e-08 Score=94.98 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=80.6
Q ss_pred HhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHh
Q 012162 27 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 106 (469)
Q Consensus 27 ~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 106 (469)
..+..+...+++++|+..|+++++.+|+++.+++++|.+|...|++ ++|+..+.+++
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~-----------------------~~A~~~l~~~l 246 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN-----------------------EEALELLFGHL 246 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-----------------------HHHHHHHHHHH
Confidence 3344455555666667777777888999999999999999999999 99999999999
Q ss_pred hccccc--hHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 107 NLQSNS--MKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 107 ~l~p~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
+++|++ ..++..+|.++..+|+.++|...|++++.
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999 89999999999999999999999999874
No 224
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.63 E-value=7.6e-08 Score=93.32 Aligned_cols=97 Identities=18% Similarity=0.064 Sum_probs=83.0
Q ss_pred HhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHH-hhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccc
Q 012162 34 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS 112 (469)
Q Consensus 34 ~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 112 (469)
+.+..++|+..++++|.++|++..+|+.|+.++..++ .+ ++++..+++++..+|++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l-----------------------~eEL~~~~~~L~~nPKn 122 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSL-----------------------EDELRLMNEFAVQNLKS 122 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-----------------------HHHHHHHHHHHHTTCCC
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhH-----------------------HHHHHHHHHHHHhCCCc
Confidence 3344567999999999999999999999999998888 47 88999999999999999
Q ss_pred hHHHHHHHHHHHHH-h-HHHHHHHHHhccccCCCCCchhHHHH
Q 012162 113 MKSHLLKANALILL-E-RYDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 113 ~~~~~~~g~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
..+|+.++.++..+ + +++++++.+.++++.+|.|..+....
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R 165 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYL 165 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999888 7 88899999999999999888765443
No 225
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.62 E-value=1.7e-08 Score=80.15 Aligned_cols=46 Identities=20% Similarity=0.435 Sum_probs=40.1
Q ss_pred ccccccccccccccc------------------EEccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 176 DDFDCTLCLKLLYEP------------------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p------------------~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
....|.||++.|.++ +.++|||.||..||.+|+.....||+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 345799999988865 3479999999999999999888999999986
No 226
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.60 E-value=3.7e-08 Score=97.22 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=94.0
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc------ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCc
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
...+..+...|..+...|+|++|+.+|.+|+++.+... .++.++|.+|..+|++
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-------------------- 240 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY-------------------- 240 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH--------------------
Confidence 34567888999999999999999999999999876554 5899999999999999
Q ss_pred hhHHHHHHHHHHHhh-----cc-ccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 93 THAELALKDAEKLLN-----LQ-SNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 93 ~~~~~A~~~~~~al~-----l~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
++|+..++++++ .+ |..+.+++.+|.+|..+|++++|+..|++++++.+.
T Consensus 241 ---~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 241 ---EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 56 888999999999999999999999999999988553
No 227
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.60 E-value=1.2e-07 Score=76.39 Aligned_cols=87 Identities=14% Similarity=0.024 Sum_probs=74.7
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++ ++|+.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~ 74 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR-----------------------AGARQ 74 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3577889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccc--hHHHHHHHHHHHHHhHHH
Q 012162 101 DAEKLLNLQSNS--MKSHLLKANALILLERYD 130 (469)
Q Consensus 101 ~~~~al~l~p~~--~~~~~~~g~~~~~~~~~~ 130 (469)
.++++++++|++ ..+...+...+..+++..
T Consensus 75 ~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (115)
T 2kat_A 75 AWESGLAAAQSRGDQQVVKELQVFLRRLARED 106 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHhcccc
Confidence 999999999864 344555555555555443
No 228
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=8.9e-08 Score=77.08 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=78.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..++..|++++|+..|+++++.+|.++.++.++|.+|...|++ ++|+..
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~~ 99 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-----------------------DEAIEY 99 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 566778899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHh
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLE 127 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~ 127 (469)
++++++++|+++.++..+|.++...|
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 100 YQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999987654
No 229
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.60 E-value=1.2e-08 Score=85.30 Aligned_cols=49 Identities=35% Similarity=0.872 Sum_probs=44.3
Q ss_pred Ccccccccccccccccc-------EEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 174 RTDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p-------~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
......|+||++.+.+| +.++|||.||..||.+|+..+..||.||..+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 34677899999999987 88999999999999999999999999999874
No 230
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.59 E-value=3.3e-08 Score=83.48 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=88.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
+..+...|..++..|+|++|+..|++++++.+.. ..++.++|.++...|++
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------- 105 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY----------------------- 105 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhH-----------------------
Confidence 4677889999999999999999999999986653 56788999999999999
Q ss_pred HHHHHHHHHHhhccc------cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 96 ELALKDAEKLLNLQS------NSMKSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 96 ~~A~~~~~~al~l~p------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
++|+..+++++++.+ ....++..+|.++...|++++|+..+++++++..
T Consensus 106 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 106 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 999999999998743 3467899999999999999999999999987654
No 231
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=7.4e-08 Score=91.56 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=85.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
+..+...|..+...|+|++|+..|.+|+++.+.. ..++.++|.+|..+|+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~----------------------- 171 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL----------------------- 171 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCH-----------------------
Confidence 4445567888888999999999999999876554 35788999999999999
Q ss_pred HHHHHHHHHHhh---ccccc----hHHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 96 ELALKDAEKLLN---LQSNS----MKSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 96 ~~A~~~~~~al~---l~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
++|+..++++++ ..|++ ..+++++|.+|..+|+|++|+..|++++++.+
T Consensus 172 ~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999994 44543 26999999999999999999999999998864
No 232
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=9.6e-08 Score=92.15 Aligned_cols=118 Identities=6% Similarity=-0.099 Sum_probs=105.4
Q ss_pred hhHHHHHHhHHHHHHhcc----------HHHHHHHHHHHhcCCCCCcccccchhHHHHHHHh--hhccCCCCCcccCccC
Q 012162 20 THVFDLVQKGNRAFRESN----------FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ--FLKHRPPSASEYRPLN 87 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~----------~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~ 87 (469)
.....+..++..+...|. +++++..++.++..+|.+..+|+.|+.++..+++ +
T Consensus 62 ~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~--------------- 126 (331)
T 3dss_A 62 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW--------------- 126 (331)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH---------------
T ss_pred hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH---------------
Confidence 345667777777766655 7899999999999999999999999999998884 7
Q ss_pred CCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhH-HHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLER-YDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 88 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
.+++..++++++++|.|..+|..++.++..+|. ++++++++.++++.+|.|..+......+-..+
T Consensus 127 --------~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 127 --------ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp --------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999 69999999999999999999988887776555
No 233
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=3.5e-08 Score=87.50 Aligned_cols=102 Identities=12% Similarity=-0.006 Sum_probs=90.4
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhc------CCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANN------IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~------~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
..+..+...|..+...|+|++|+.+|.++++ ..|....++.++|.+|...|++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------- 82 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW--------------------- 82 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH---------------------
Confidence 3577888999999999999999999999999 4555678899999999999999
Q ss_pred hHHHHHHHHHHHhhc------cc-cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 94 HAELALKDAEKLLNL------QS-NSMKSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 94 ~~~~A~~~~~~al~l------~p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
++|+..+++++++ ++ ....+++.+|.++..+|++++|+..+++++++.+
T Consensus 83 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 83 --DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp --HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999998 33 4466899999999999999999999999997643
No 234
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.58 E-value=1e-07 Score=93.94 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=93.6
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCC------CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
..+..+...|..+...|+|++|+.+|.+|+++.+. ...++.++|.+|..+|++
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~--------------------- 238 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD--------------------- 238 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH---------------------
Confidence 45777889999999999999999999999997442 246889999999999999
Q ss_pred hHHHHHHHHHHHhh-----ccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 94 HAELALKDAEKLLN-----LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 94 ~~~~A~~~~~~al~-----l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
++|+..++++++ .+|..+.+++.+|.++..+|++++|+..+++++++.+.
T Consensus 239 --~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 239 --QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp --HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred --HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 88999999999999999999999999999999998765
No 235
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=2.1e-08 Score=96.22 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=62.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
+..+...|..+...|+|++|+.+|++|+++.+.. ..++.++|.+|.. |++
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~----------------------- 131 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL----------------------- 131 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH-----------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH-----------------------
Confidence 4455556666666666666666666666653321 2455566666665 666
Q ss_pred HHHHHHHHHHhhccccc------hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 96 ELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
++|+..+++|+++.|.. ..++..+|.+|..+|+|++|+..|++++++.|++
T Consensus 132 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 132 SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 66777777777666543 4566667777777777777777777777665544
No 236
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=3.4e-08 Score=71.80 Aligned_cols=47 Identities=28% Similarity=0.762 Sum_probs=40.5
Q ss_pred CCCccccccccccccccccEEccCCCc-ccHHHHHHHcccCCCccccccccc
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
....+...|.||++...+++.+||||. ||..|+.. ...||.||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 344567799999999999999999999 99999984 368999999874
No 237
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=1.3e-07 Score=75.44 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=75.3
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
....+...|..++..|+|++|+..|.++++.+|+++.++.++|.++..+|++ ++|+.
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 93 (118)
T 1elw_A 37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF-----------------------EEAKR 93 (118)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-----------------------HHHHH
Confidence 3567888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANAL 123 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~ 123 (469)
.++++++++|+++.++..++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 94 TYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999888764
No 238
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.55 E-value=7.8e-08 Score=98.20 Aligned_cols=114 Identities=11% Similarity=0.025 Sum_probs=94.6
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcC-----CCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCc
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
.+..+..++..+..+|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~-------------------- 367 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAY-------------------- 367 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCH--------------------
Confidence 3556667788888999999999999999976 3444 46789999999999999
Q ss_pred hhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccC-----CCCCchhHHHHHHHH
Q 012162 93 THAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV-----DPFSNPLQASLQNLE 157 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~ 157 (469)
++|+..+++++++ .|+-...++++|.+|..+|+|++|+..|++|+++ .|+++.....+..+.
T Consensus 368 ---~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 442 (490)
T 3n71_A 368 ---EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM 442 (490)
T ss_dssp ---HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999985 3555668999999999999999999999999974 788887765544433
No 239
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.54 E-value=1.5e-08 Score=76.09 Aligned_cols=43 Identities=33% Similarity=0.805 Sum_probs=38.3
Q ss_pred cccccccccccccccEEccCCCc-ccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
+...|+||++.+.+|+.+||||. ||..|+..+. .||.||.++.
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhh
Confidence 34589999999999999999999 9999998663 8999999874
No 240
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.53 E-value=5.9e-08 Score=95.54 Aligned_cols=103 Identities=24% Similarity=0.193 Sum_probs=93.9
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc------cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
.+..+...|..++..|+|++|+..|.+++++.|.... ++.++|.+|..+|++
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------------- 243 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF---------------------- 243 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh----------------------
Confidence 3567788999999999999999999999999887665 899999999999999
Q ss_pred HHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 95 AELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
++|+..+++++++.+.. ..+++.+|.+|...|++++|+..|++++++.+..
T Consensus 244 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 244 -ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999998776 7899999999999999999999999999986654
No 241
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.52 E-value=9.9e-08 Score=94.09 Aligned_cols=122 Identities=14% Similarity=0.000 Sum_probs=100.0
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC-------cccccchhHHHHHHHhhhccCCCCCcccCccCCCC
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 90 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (469)
....+..+...|..++..|++++|+.+|.+|+++.+.. +.++.++|.+|..+|+|
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~------------------ 198 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHY------------------ 198 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCH------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCH------------------
Confidence 34567888899999999999999999999999885542 35678899999999999
Q ss_pred CchhHHHHHHHHHHHhhccc------cchHHHHHHHHHHHHHhHHHHHHHHHhcccc-----CCCCCchhHHHHHHHHHh
Q 012162 91 PTTHAELALKDAEKLLNLQS------NSMKSHLLKANALILLERYDMARDAILSGLQ-----VDPFSNPLQASLQNLERT 159 (469)
Q Consensus 91 ~~~~~~~A~~~~~~al~l~p------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~ 159 (469)
++|+..+++++++.+ ....+++++|.+|..+|++++|+..|+++++ .+|....+...+..+...
T Consensus 199 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 199 -----DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273 (378)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence 999999999999743 2356899999999999999999999999999 677666565555555544
Q ss_pred hhh
Q 012162 160 TAS 162 (469)
Q Consensus 160 ~~~ 162 (469)
+++
T Consensus 274 ~g~ 276 (378)
T 3q15_A 274 AGQ 276 (378)
T ss_dssp TTC
T ss_pred CCC
Confidence 443
No 242
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.52 E-value=6.6e-08 Score=97.18 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=91.7
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcC-----CCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNI-----KPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
.....+....+.|+|++|+..|++++++ .|+++ ..+.++|.+|..+|+|
T Consensus 300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~----------------------- 356 (433)
T 3qww_A 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW----------------------- 356 (433)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH-----------------------
Confidence 3444555555678999999999999975 45554 6788999999999999
Q ss_pred HHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccC-----CCCCchhHHHHHHHH
Q 012162 96 ELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV-----DPFSNPLQASLQNLE 157 (469)
Q Consensus 96 ~~A~~~~~~al~l--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~ 157 (469)
++|+..+++++++ .|+-...++++|.+|..+|+|++|+..|++|+++ .|+++.+......++
T Consensus 357 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999975 3555668999999999999999999999999975 788888777666554
No 243
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.52 E-value=8.7e-08 Score=86.67 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=93.8
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHH----hhhccCCCCCcccCccCCCCCchhH
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS----QFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
.++..+...|..++..+++++|+..|++|++. +++.+++++|.+|.. + ++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~----------------------- 69 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADY----------------------- 69 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCH-----------------------
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCH-----------------------
Confidence 45788899999999999999999999999875 588999999999887 6 66
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHH----HhHHHHHHHHHhccccCCCC--CchhHHHHHHHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPF--SNPLQASLQNLE 157 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~ 157 (469)
++|+..++++++ +.++.+++.+|.+|.. .+++++|+.+|+++++.+|. ++.+...+..+-
T Consensus 70 ~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y 135 (212)
T 3rjv_A 70 PQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIY 135 (212)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 999999999954 5789999999999987 88999999999999999883 356655555543
No 244
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2e-07 Score=77.77 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=75.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..++..|+|++|+..|+++++++|+++.+++++|.+|..+|++ ++|+..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 121 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL-----------------------DQAVLD 121 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 677888999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHH
Q 012162 102 AEKLLNLQSNSMKSHLLKANALI 124 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~ 124 (469)
++++++++|++..++..++.+..
T Consensus 122 ~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 122 LQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999999999888877653
No 245
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.50 E-value=2.3e-07 Score=86.74 Aligned_cols=106 Identities=13% Similarity=0.056 Sum_probs=92.4
Q ss_pred hHHHHHHhHHHHHH----hccHHHHHHHHHHHhcCCCCCcccccchhHHHHH----HHhhhccCCCCCcccCccCCCCCc
Q 012162 21 HVFDLVQKGNRAFR----ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 21 ~~~~~~~~g~~~~~----~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
....+...|..+.. .+++++|+..|++|++.+ ++.+++++|.+|.. .+++
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~-------------------- 94 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT-------------------- 94 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH--------------------
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH--------------------
Confidence 35677889999999 999999999999999986 78999999999999 8999
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHHHHHH----HhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 93 THAELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
++|+..++++++++ ++.+++.+|.+|.. .+++++|+.+|+++++.+ +..+...+..
T Consensus 95 ---~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 95 ---NKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp ---HHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 99999999999984 78999999999999 999999999999999976 4444444433
No 246
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.49 E-value=9.2e-08 Score=86.50 Aligned_cols=110 Identities=8% Similarity=-0.053 Sum_probs=89.0
Q ss_pred hHHHHHHhHHHHHHhc----cHHHHHHHHHHHhcCCCCCcccccchhHHHHH----HHhhhccCCCCCcccCccCCCCCc
Q 012162 21 HVFDLVQKGNRAFRES----NFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPT 92 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~----~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 92 (469)
.+.++...|..+.. + ++++|+.+|++|++ +.++.+++++|.+|.. .+++
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~-------------------- 105 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDV-------------------- 105 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCH--------------------
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCH--------------------
Confidence 45667777888777 6 89999999999964 5688888889888876 5667
Q ss_pred hhHHHHHHHHHHHhhccc--cchHHHHHHHHHHHH----HhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 93 THAELALKDAEKLLNLQS--NSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 93 ~~~~~A~~~~~~al~l~p--~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
.+|+..++++++.+| +++.+++.+|.+|.. .+++++|+.+|++++++ |+++.+...+..+-
T Consensus 106 ---~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 106 ---AHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp ---HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 899999999999988 568899999999988 88899999999999888 66666666555543
No 247
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.48 E-value=2.9e-07 Score=95.14 Aligned_cols=118 Identities=12% Similarity=-0.036 Sum_probs=97.7
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc-ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
....+...|..+...|++++|...|+++++++|.++ .+|.+.+.++.+.|++ ++|.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-----------------------~~A~ 376 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI-----------------------KSGR 376 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH-----------------------HHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH-----------------------HHHH
Confidence 356677788888888999999999999999999885 5888888888888998 8999
Q ss_pred HHHHHHhhccccchHHHHHHHHH-HHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhh
Q 012162 100 KDAEKLLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 161 (469)
Q Consensus 100 ~~~~~al~l~p~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 161 (469)
..+++|++..|.....+...|.. +...|++++|+..|+++++.+|++..+...+..++...+
T Consensus 377 ~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 377 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 99999999988887777776665 346889999999999999999988888777777665543
No 248
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.48 E-value=5.2e-08 Score=96.63 Aligned_cols=103 Identities=19% Similarity=0.115 Sum_probs=93.0
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc------cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
.+..+...|..++..|+|++|+.+|++++++.|.... ++.++|.+|...|++
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------------- 279 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF---------------------- 279 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH----------------------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH----------------------
Confidence 3567788999999999999999999999999887655 899999999999999
Q ss_pred HHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 95 AELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
++|+..+++++++.+.. ..+++.+|.+|...|++++|+..|++++++.+..
T Consensus 280 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 280 -EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 99999999999998854 7889999999999999999999999999886643
No 249
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.47 E-value=2.7e-07 Score=92.74 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=98.5
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC-----CCCCc---ccccchhHHHHHHHhhhccCCCCCcccCccCCCCC
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 91 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (469)
..+..+......+..+|+|++|+..|++++++ .|+++ ..+.++|.+|..+|+|
T Consensus 285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~------------------- 345 (429)
T 3qwp_A 285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL------------------- 345 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCH-------------------
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccH-------------------
Confidence 34556666777888999999999999999976 34443 6789999999999999
Q ss_pred chhHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccC-----CCCCchhHHHHHHHHH
Q 012162 92 TTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV-----DPFSNPLQASLQNLER 158 (469)
Q Consensus 92 ~~~~~~A~~~~~~al~l--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~ 158 (469)
++|+..+++++++ .|+-...++++|.+|..+|+|++|+..|++|+++ .|+++.....+..++.
T Consensus 346 ----~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~ 421 (429)
T 3qwp_A 346 ----EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE 421 (429)
T ss_dssp ----HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9999999999975 3455668999999999999999999999999875 7888888777666665
Q ss_pred hhh
Q 012162 159 TTA 161 (469)
Q Consensus 159 ~~~ 161 (469)
...
T Consensus 422 ~~~ 424 (429)
T 3qwp_A 422 CDA 424 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 250
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.47 E-value=2.9e-07 Score=75.21 Aligned_cols=80 Identities=11% Similarity=-0.002 Sum_probs=72.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
...+...|..++..|+|++|+..|+++++.+|++ +.+++++|.+|..+|++ ++|
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~-----------------------~~A 95 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN-----------------------TEA 95 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 3677889999999999999999999999999999 78899999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHH
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALI 124 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~ 124 (469)
+..++++++..|+++.+...+..+..
T Consensus 96 ~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 96 QQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 99999999999999887666655443
No 251
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.46 E-value=9.3e-08 Score=90.99 Aligned_cols=103 Identities=24% Similarity=0.193 Sum_probs=92.2
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc------cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
.+..+...|..++..|++++|+..|++++++.+.... ++.++|.++...|++
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------------------- 239 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF---------------------- 239 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH----------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH----------------------
Confidence 3556778899999999999999999999998776544 899999999999999
Q ss_pred HHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 95 AELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
++|+..+++++++.+.. ..++..+|.++...|++++|+..|++++++.+..
T Consensus 240 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 240 -ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999988766 7899999999999999999999999999886643
No 252
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=3e-08 Score=77.44 Aligned_cols=45 Identities=33% Similarity=0.636 Sum_probs=37.5
Q ss_pred cccccccccccccccEEc---cCCCcccHHHHHHHccc----C----CCccc--cccc
Q 012162 176 DDFDCTLCLKLLYEPITT---PCGHSFCRSCLFQSMDR----G----NKCPL--CRAV 220 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~---~cgh~~C~~Ci~~~~~~----~----~~CP~--Cr~~ 220 (469)
..+.|+||++.+..|+.+ +|||+||+.|+.+++.. + ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 567899999999988653 79999999999998752 2 36999 9987
No 253
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.44 E-value=3.5e-07 Score=88.68 Aligned_cols=124 Identities=11% Similarity=0.071 Sum_probs=77.2
Q ss_pred hhHHHHHHhHHHHHHh---ccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCcc---------C
Q 012162 20 THVFDLVQKGNRAFRE---SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPL---------N 87 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~---~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------~ 87 (469)
..+..++.+|..++.. .++.+|+.+|++|++++|+++.+|..++.+|.....+ + +........+ .
T Consensus 194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~--~-~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ--H-PLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH--S-CCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc--C-CCchhhHHHHHHHHHHHHhc
Confidence 3577888889888765 4468899999999999999999999999998754333 0 0000000000 0
Q ss_pred CCCC---------------chhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 88 GLDP---------------TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 88 ~~~~---------------~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
..++ ....++|+..+++|+.++|+ +.+|..+|.++...|++++|++.|++|+.++|..+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0000 11125566666666666653 45566666666666666666666666666666543
No 254
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.42 E-value=5.1e-07 Score=71.69 Aligned_cols=77 Identities=19% Similarity=0.130 Sum_probs=52.6
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCC-------CCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKP-------GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
.+......|..+++.|+|..|+..|++|++..+ ..+.++.++|.+|+++|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~--------------------- 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL--------------------- 62 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH---------------------
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH---------------------
Confidence 356788999999999999999999999998632 2234455555555555555
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHH
Q 012162 94 HAELALKDAEKLLNLQSNSMKSHLLKA 120 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~~~~~~~~~g 120 (469)
+.|+..++++++++|++..+..+++
T Consensus 63 --~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 63 --DKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp --HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 5555555555555555555544444
No 255
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.40 E-value=1.1e-06 Score=90.64 Aligned_cols=107 Identities=10% Similarity=-0.023 Sum_probs=95.4
Q ss_pred hHHHHHHhHHHHHH-------hccHH-------HHHHHHHHHhc-CCCCCcccccchhHHHHHHHhhhccCCCCCcccCc
Q 012162 21 HVFDLVQKGNRAFR-------ESNFE-------EAISNYSRANN-IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRP 85 (469)
Q Consensus 21 ~~~~~~~~g~~~~~-------~~~~~-------~A~~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 85 (469)
....+...|..+.. .|+++ +|+..|++|++ +.|++..+|..+|..+...|++
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~------------- 337 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY------------- 337 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH-------------
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH-------------
Confidence 35566677777765 69987 99999999998 8999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHhhccccch-HHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 86 LNGLDPTTHAELALKDAEKLLNLQSNSM-KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 86 ~~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
++|...++++++++|+++ .+|..+|.++...|++++|+..|++|++..|.+....
T Consensus 338 ----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 338 ----------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp ----------HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred ----------HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 999999999999999985 6999999999999999999999999999988765543
No 256
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=1.8e-07 Score=82.72 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=88.1
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC---CCC----CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCC
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI---KPG----DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 91 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~---~p~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (469)
...+..+...|..+...|+|++|+..|.+++++ .++ ...++.++|.++..+|++
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------------- 123 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL------------------- 123 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH-------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH-------------------
Confidence 345677889999999999999999999999998 442 246789999999999999
Q ss_pred chhHHHHHHHHHHHhhcccc------chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 92 TTHAELALKDAEKLLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 92 ~~~~~~A~~~~~~al~l~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
++|+..+++++++.+. ...++..+|.++...|++++|+..+++++++...
T Consensus 124 ----~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 124 ----AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999976432 2345689999999999999999999999987543
No 257
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=3.7e-07 Score=85.73 Aligned_cols=114 Identities=9% Similarity=-0.004 Sum_probs=93.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
.......|..+...|+|++|.+.|+.++...|++. +++.+|.++++.++| ++|+..
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~-----------------------~dA~~~ 157 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERW-----------------------TDVIDQ 157 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 34455678899999999999999999999999988 999999999999999 999999
Q ss_pred HHHHhhcc-ccc-hHHHHHHHHHHHHHhHHHHHHHHHhccccCC--CC-CchhHHHHHHHHHh
Q 012162 102 AEKLLNLQ-SNS-MKSHLLKANALILLERYDMARDAILSGLQVD--PF-SNPLQASLQNLERT 159 (469)
Q Consensus 102 ~~~al~l~-p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~ 159 (469)
+++++... |.. ..+++.+|.++..+|++++|+.+|++++.-. |. ..++...+..+-..
T Consensus 158 l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 158 VKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 99998874 322 4589999999999999999999999998644 44 33344444333333
No 258
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.35 E-value=7.3e-08 Score=93.07 Aligned_cols=43 Identities=30% Similarity=0.893 Sum_probs=39.2
Q ss_pred cccccccccccccccEEccCCCc-ccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~-~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
+...|+||++.+.+|+.+||||+ ||..|+..+ ..||.||.++.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45789999999999999999999 999999877 68999999874
No 259
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.35 E-value=5.8e-07 Score=73.05 Aligned_cols=110 Identities=11% Similarity=0.042 Sum_probs=93.2
Q ss_pred HHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcc-c-
Q 012162 33 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-S- 110 (469)
Q Consensus 33 ~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-p- 110 (469)
........+...|.+++..++....+-++.|+++.+..+. .+..+++..++..++-+ |
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~--------------------~d~~~GI~lLe~l~~~~~p~ 71 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN--------------------DDIRKGIVLLEELLPKGSKE 71 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH--------------------HHHHHHHHHHHHHTTTSCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCH--------------------HHHHHHHHHHHHHHhcCCcc
Confidence 3445566778888888888888889999999999876544 22267999999999988 6
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 111 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
..-+.+|.+|.+++++|+|++|+.+++..|+.+|+|..+......+++++..
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999999999999998888887754
No 260
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.34 E-value=6.3e-08 Score=77.97 Aligned_cols=45 Identities=20% Similarity=0.495 Sum_probs=0.4
Q ss_pred cccccccccccccc-----------------E-EccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 177 DFDCTLCLKLLYEP-----------------I-TTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 177 ~~~C~ic~~~~~~p-----------------~-~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
.-.|.||++.|.++ + .++|||.||..||.+|+.....||+||.++
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp C--------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 35899999998764 2 258999999999999999888999999886
No 261
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=5.6e-07 Score=73.00 Aligned_cols=85 Identities=9% Similarity=0.109 Sum_probs=76.4
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC-------cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
....+...|..++..|+|++|+..|.++++.+|++ +.+++++|.+|..+|++
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--------------------- 95 (131)
T 1elr_A 37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY--------------------- 95 (131)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH---------------------
Confidence 35677889999999999999999999999999887 88999999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHH
Q 012162 94 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERY 129 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~ 129 (469)
++|+..++++++++| ++..+..++.++..+++.
T Consensus 96 --~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 96 --KDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp --HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999999 588888888887776653
No 262
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.29 E-value=8.5e-07 Score=70.40 Aligned_cols=83 Identities=13% Similarity=-0.048 Sum_probs=73.3
Q ss_pred cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcc-------ccchHHHHHHHHHHHHHhHHH
Q 012162 58 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-------SNSMKSHLLKANALILLERYD 130 (469)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-------p~~~~~~~~~g~~~~~~~~~~ 130 (469)
-.+.+|..++..++| ..|+..+++|++.. +..+..+..+|.+++.+|+++
T Consensus 7 dc~~lG~~~~~~~~y-----------------------~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~ 63 (104)
T 2v5f_A 7 DCFELGKVAYTEADY-----------------------YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63 (104)
T ss_dssp HHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHccch-----------------------HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHH
Confidence 356789999999999 99999999999864 456789999999999999999
Q ss_pred HHHHHHhccccCCCCCchhHHHHHHHHHhhhhh
Q 012162 131 MARDAILSGLQVDPFSNPLQASLQNLERTTASL 163 (469)
Q Consensus 131 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 163 (469)
+|+..++++++++|++..+...+..+++.+...
T Consensus 64 ~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~~~ 96 (104)
T 2v5f_A 64 KALLLTKKLLELDPEHQRANGNLKYFEYIMAKE 96 (104)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHhhHHHHHHHHHhc
Confidence 999999999999999999988888777766544
No 263
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=8.4e-07 Score=66.47 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=41.3
Q ss_pred Cccccccccccccc--cccEEccCC-----CcccHHHHHHHcccC--CCcccccccccc
Q 012162 174 RTDDFDCTLCLKLL--YEPITTPCG-----HSFCRSCLFQSMDRG--NKCPLCRAVLFI 223 (469)
Q Consensus 174 ~~~~~~C~ic~~~~--~~p~~~~cg-----h~~C~~Ci~~~~~~~--~~CP~Cr~~~~~ 223 (469)
..+...|.||++.+ .+++.+||+ |.|+..||.+|+..+ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34556899999876 468889996 999999999999865 489999998854
No 264
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.21 E-value=6.5e-07 Score=95.58 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=66.1
Q ss_pred CCCccccccccccccccccEEccCC-CcccHHHHHHHcccCCCccccccccccCCCcccCcccHHHHHHHhchHHHHH
Q 012162 172 PERTDDFDCTLCLKLLYEPITTPCG-HSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYAE 248 (469)
Q Consensus 172 ~~~~~~~~C~ic~~~~~~p~~~~cg-h~~C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 248 (469)
....+.+.|||..++|.+||+++.| +||.+.+|.+|+..+.+||..|+++.. ..+.+|..|++.|+.|..+....
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~--~~liPN~~Lk~~I~~w~~~~~~~ 961 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL--EDVTPNEELRQKILCFKKQKKEE 961 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG--GGCEECHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc--ccccccHHHHHHHHHHHHHHHhh
Confidence 4567899999999999999999998 699999999999888899999999854 57899999999999998665543
No 265
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=1.9e-06 Score=72.09 Aligned_cols=96 Identities=11% Similarity=-0.011 Sum_probs=81.6
Q ss_pred hHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHH----HHhhhccCCCCCcccCccCCCCCchhHHHHHHHHH
Q 012162 28 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 103 (469)
Q Consensus 28 ~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 103 (469)
.|..+...+.+++|+..|++|.+. .++.+++++|.+|.. .+++ .+|+..++
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~-----------------------~~A~~~~~ 85 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDL-----------------------RKAAQYYS 85 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCH-----------------------HHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccH-----------------------HHHHHHHH
Confidence 667777778888999999999987 688999999999987 6777 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHH----HhHHHHHHHHHhccccCCCCCchhHHH
Q 012162 104 KLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQAS 152 (469)
Q Consensus 104 ~al~l~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (469)
+|.+. .++.+++.+|.+|.. .+++++|+.+|++|.+.. ++.+...
T Consensus 86 ~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~ 134 (138)
T 1klx_A 86 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGI 134 (138)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 99987 678999999999998 899999999999998873 4444333
No 266
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.16 E-value=1.8e-06 Score=84.47 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=88.9
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc------cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
.+..+...|..++..|+|++|+..|.+++++.|.... ++.++|.++...|++
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~---------------------- 109 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL---------------------- 109 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH----------------------
Confidence 4556778899999999999999999999998776543 367889999999999
Q ss_pred HHHHHHHHHHHhhcc--------ccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCC
Q 012162 95 AELALKDAEKLLNLQ--------SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 95 ~~~A~~~~~~al~l~--------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (469)
++|+..+++++++. |....++..+|.++...|++++|...+++++++.+..
T Consensus 110 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 110 -QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp -HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred -HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 99999999999876 4456788899999999999999999999999988764
No 267
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.12 E-value=3.2e-06 Score=65.55 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=65.2
Q ss_pred hhHHHHHHhHHHHHHhcc---HHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 20 THVFDLVQKGNRAFRESN---FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~---~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
.++..+...|..++..++ ..+|..++++|++++|+++.++..+|..++..|+| +
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y-----------------------~ 60 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF-----------------------Q 60 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH-----------------------H
Confidence 346788889999976666 79999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchH
Q 012162 97 LALKDAEKLLNLQSNSMK 114 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~ 114 (469)
+|+..++++++.+|.++.
T Consensus 61 ~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 61 EAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHhhCCCCcc
Confidence 999999999999998544
No 268
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.09 E-value=1.8e-06 Score=80.51 Aligned_cols=104 Identities=23% Similarity=0.198 Sum_probs=87.2
Q ss_pred hhHHHHHHhHHHHHH-----hcc------HHHHHHHHHHHhcCCCC--CcccccchhHHHHHH-----HhhhccCCCCCc
Q 012162 20 THVFDLVQKGNRAFR-----ESN------FEEAISNYSRANNIKPG--DPIVLGNRSSAYIRI-----SQFLKHRPPSAS 81 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~-----~~~------~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~~~~~~~~ 81 (469)
..++.++-.|..... .|+ ...|...+++|+++||+ +..+|..+|..|... |+.
T Consensus 150 ~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~--------- 220 (301)
T 3u64_A 150 VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM--------- 220 (301)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH---------
T ss_pred cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH---------
Confidence 345666655544422 233 47899999999999999 677999999999885 788
Q ss_pred ccCccCCCCCchhHHHHHHHHHHHhhccccc-hHHHHHHHHHHHH-HhHHHHHHHHHhccccCCCCC
Q 012162 82 EYRPLNGLDPTTHAELALKDAEKLLNLQSNS-MKSHLLKANALIL-LERYDMARDAILSGLQVDPFS 146 (469)
Q Consensus 82 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~ 146 (469)
++|...+++|++++|+. ...++..|..+.. .|++++|...+++|++.+|..
T Consensus 221 --------------ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 221 --------------EKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp --------------HHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred --------------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999975 9999999999987 599999999999999998874
No 269
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=3.3e-06 Score=86.20 Aligned_cols=105 Identities=8% Similarity=-0.055 Sum_probs=88.3
Q ss_pred CChhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC-----CCCC---cccccchhHHHHHHHhhhccCCCCCcccCc
Q 012162 14 LPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRP 85 (469)
Q Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 85 (469)
+.++....+..+.+.|..|..+|+|++|+.+|++++++ .|++ +..++++|.+|..+|+|
T Consensus 343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~------------- 409 (490)
T 3n71_A 343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI------------- 409 (490)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH-------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH-------------
Confidence 33445556888899999999999999999999999976 3444 47789999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHhhc-----cccc---hHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 86 LNGLDPTTHAELALKDAEKLLNL-----QSNS---MKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 86 ~~~~~~~~~~~~A~~~~~~al~l-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
++|+..+++|+++ .|++ .+....++.++..++.|.+|...|.++.+
T Consensus 410 ----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 410 ----------EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999974 4554 45667889999999999999999988754
No 270
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.03 E-value=6.4e-06 Score=80.50 Aligned_cols=102 Identities=12% Similarity=-0.034 Sum_probs=88.3
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc-----cccchhHHHHHHHhhhccCCCCCcccCccCCCCCchh
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI-----VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 94 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (469)
..+..+..+|..++..|++++|+..+++++...|.+.. ++.++|.++...|++
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------------------- 69 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL---------------------- 69 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCH----------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcH----------------------
Confidence 34667778899999999999999999999999876542 678889999999999
Q ss_pred HHHHHHHHHHHhhccccch------HHHHHHHHHHHHHhHHHHHHHHHhccccCCC
Q 012162 95 AELALKDAEKLLNLQSNSM------KSHLLKANALILLERYDMARDAILSGLQVDP 144 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~~------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 144 (469)
++|+..+++++++.|... .++..+|.++...|++++|+..|++++++.+
T Consensus 70 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 124 (373)
T 1hz4_A 70 -TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 124 (373)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999876543 3478899999999999999999999998753
No 271
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.98 E-value=5e-06 Score=84.88 Aligned_cols=95 Identities=14% Similarity=0.032 Sum_probs=57.8
Q ss_pred HHHHHhHHHHHHhc---cHHHHHHHHHHHhcCCCCCcccccchhHHHHH----HHhhhccCCCCCcccCccCCCCCchhH
Q 012162 23 FDLVQKGNRAFRES---NFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 23 ~~~~~~g~~~~~~~---~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
..+...|..++..| ++++|+..|++|++. +++.+++++|.+|.. .+++
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~----------------------- 383 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDE----------------------- 383 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH-----------------------
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH-----------------------
Confidence 33444555555433 566666666666655 355666666666655 4555
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHH----HhHHHHHHHHHhccccCCC
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDP 144 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p 144 (469)
++|+..++++++.. ++.+++.+|.+|.. .+++++|+.+|++|++.+|
T Consensus 384 ~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 384 QQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 66666666666653 46666677776666 6667777777777776664
No 272
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.92 E-value=1.4e-05 Score=80.98 Aligned_cols=106 Identities=10% Similarity=-0.064 Sum_probs=78.8
Q ss_pred HHHHhHHHHHHhc---cHHHHHHHHHHHhcCCCCCcccccchhHHHHHH----HhhhccCCCCCcccCccCCCCCchhHH
Q 012162 24 DLVQKGNRAFRES---NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI----SQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 24 ~~~~~g~~~~~~~---~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
.+...|..+...| ++++|+..|++|.+..|.++..++++|.+|... +++ +
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~-----------------------~ 234 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE-----------------------K 234 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH-----------------------H
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH-----------------------H
Confidence 5567777888888 888888888888888888777777888887554 345 7
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHH-H--HHHhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANA-L--ILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
+|+..++++. |+++.+++.+|.+ + ...+++++|+.+|+++.+. +++.+...+..+-
T Consensus 235 ~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 235 TAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLY 293 (452)
T ss_dssp HHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 8888888877 7788888888887 4 4677888888888887754 4566655555443
No 273
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=2.4e-05 Score=57.24 Aligned_cols=49 Identities=20% Similarity=0.487 Sum_probs=40.0
Q ss_pred ccccccccccccccccEE-ccCCCcccHHHHHHHcccC--CCcccccccccc
Q 012162 175 TDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRG--NKCPLCRAVLFI 223 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~--~~CP~Cr~~~~~ 223 (469)
+....|.||..++..-.. ..|+|.|...||.+|+... ..||.||..+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345689999998874443 4899999999999999866 689999988753
No 274
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.87 E-value=2.8e-05 Score=78.63 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=85.5
Q ss_pred HHhHHHHHHh----ccHHHHHHHHHHHhcCCCCCcccccchhHHHH---HHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 26 VQKGNRAFRE----SNFEEAISNYSRANNIKPGDPIVLGNRSSAYI---RISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 26 ~~~g~~~~~~----~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
...|..+... +++++|+..|+++. |+++.+++++|.+|+ ..+++ ++|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~-----------------------~~A 270 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV-----------------------EQM 270 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH-----------------------HHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH-----------------------HHH
Confidence 5567666554 79999999999998 899999999999954 45667 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHh-----HHHHHHHHHhccccCCCCCchhHHHHHHHHH
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANALILLE-----RYDMARDAILSGLQVDPFSNPLQASLQNLER 158 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 158 (469)
+..++++.+.+ ++.+++.+|.+|. .| ++++|+.+|++|. ++++.+...+..+-.
T Consensus 271 ~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 271 MKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 99999998664 8999999999998 66 9999999999999 888888777766543
No 275
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.86 E-value=4.3e-05 Score=62.20 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=74.4
Q ss_pred CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhHHHHHH
Q 012162 55 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS-NSMKSHLLKANALILLERYDMAR 133 (469)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~g~~~~~~~~~~~A~ 133 (469)
.+..-++.|+++.+..+. .+..+++..++..++-+| ..-+.+|.+|.+++++|+|++|+
T Consensus 39 s~qt~F~yAw~Lv~S~~~--------------------~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDV--------------------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp CHHHHHHHHHHHHHSSCH--------------------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCH--------------------HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHH
Confidence 456667778888776433 122789999999999888 45788999999999999999999
Q ss_pred HHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 134 DAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
.+.+..|+.+|+|..+......+++++.+
T Consensus 99 ~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~k 127 (134)
T 3o48_A 99 RYVDTLFEHERNNKQVGALKSMVEDKIQK 127 (134)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888765
No 276
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.82 E-value=3.6e-05 Score=78.45 Aligned_cols=108 Identities=11% Similarity=-0.023 Sum_probs=89.4
Q ss_pred hhHHHHHHhHHHHHH----hccHHHHHHHHHHHhcCCCCCcccccchhHHHHH----HHhhhccCCCCCcccCccCCCCC
Q 012162 20 THVFDLVQKGNRAFR----ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDP 91 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~----~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 91 (469)
.++..+...|..++. .+++++|+..|++|++. +++.+++.+|.+|.. .+++
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~------------------- 95 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDY------------------- 95 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH-------------------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH-------------------
Confidence 457788888999988 89999999999999886 678899999999988 7777
Q ss_pred chhHHHHHHHHHHHhhccccchHHHHHHHHHHHH----HhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 92 TTHAELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 92 ~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
++|+..++++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. ++..+...+..+
T Consensus 96 ----~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 156 (490)
T 2xm6_A 96 ----AQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDA 156 (490)
T ss_dssp ----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 8999999999875 478899999999988 78999999999998775 455555555443
No 277
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.77 E-value=7e-05 Score=61.72 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=76.4
Q ss_pred CCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhHHHH
Q 012162 53 PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS-NSMKSHLLKANALILLERYDM 131 (469)
Q Consensus 53 p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~g~~~~~~~~~~~ 131 (469)
.-.+...++.|+++.+..+- .+..+++..++..++-+| ..-+.+|.+|.+++++|+|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~--------------------~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~ 95 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDV--------------------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM 95 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSH--------------------HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCH--------------------HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHH
Confidence 34567788888888876543 222789999999999888 467789999999999999999
Q ss_pred HHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 132 ARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 132 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
|+.+.+..|+.+|+|..+......+++++..
T Consensus 96 Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~k 126 (144)
T 1y8m_A 96 AKRYVDTLFEHERNNKQVGALKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888755
No 278
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=2.7e-05 Score=65.00 Aligned_cols=92 Identities=12% Similarity=-0.023 Sum_probs=76.5
Q ss_pred hccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchH
Q 012162 35 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 114 (469)
Q Consensus 35 ~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 114 (469)
.+|+++|+..|++|.+.. ++.+. +|.+|...+.. ++|+..++++.+. .++.
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~-----------------------~~A~~~~~~Aa~~--g~~~ 58 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINK-----------------------QKLFQYLSKACEL--NSGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCH-----------------------HHHHHHHHHHHHT--TCHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCH-----------------------HHHHHHHHHHHcC--CCHH
Confidence 468999999999999887 44444 88888777777 8899999999987 6889
Q ss_pred HHHHHHHHHHH----HhHHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 115 SHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 115 ~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
+++.+|.+|.. .+++++|+.+|++|.+. +++.+...+..+-
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y 103 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQ 103 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 99999999998 89999999999999886 5666666655543
No 279
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.72 E-value=3.1e-05 Score=65.22 Aligned_cols=79 Identities=13% Similarity=0.016 Sum_probs=69.1
Q ss_pred HHHHHHhHHHHHHhc---cHHHHHHHHHHHhcCC-C-CCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHH
Q 012162 22 VFDLVQKGNRAFRES---NFEEAISNYSRANNIK-P-GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 96 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~---~~~~A~~~y~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (469)
.+..++.|..+.+.+ ++.+|+..++..++.+ | ++.++++++|.+|+++++| .
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y-----------------------~ 88 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-----------------------E 88 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH-----------------------H
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH-----------------------H
Confidence 566677888888866 7889999999999998 7 5689999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHH
Q 012162 97 LALKDAEKLLNLQSNSMKSHLLKANAL 123 (469)
Q Consensus 97 ~A~~~~~~al~l~p~~~~~~~~~g~~~ 123 (469)
+|..+++++++++|+|..+...+-.+-
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999999988877665554
No 280
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.71 E-value=7.6e-05 Score=70.90 Aligned_cols=100 Identities=9% Similarity=-0.037 Sum_probs=85.9
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCC--CCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKP--GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
..+...|..+...|++++|+..+.+++..+| ++..++...+.+++++|+. +.|.+
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~-----------------------d~A~k 157 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV-----------------------STAST 157 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 4456789999999999999999999999997 7889999999999999999 99999
Q ss_pred HHHHHhhcccc------chHHHHHHHHHHHHHh--HHHHHHHHHhccccCCCC
Q 012162 101 DAEKLLNLQSN------SMKSHLLKANALILLE--RYDMARDAILSGLQVDPF 145 (469)
Q Consensus 101 ~~~~al~l~p~------~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~ 145 (469)
.+++..+.+|+ ....+..-|++....| ++.+|...|+++....|+
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 99999999993 3334444455577777 999999999999888886
No 281
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.71 E-value=6.8e-05 Score=83.54 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=86.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...+...|..++..|+|++|+.+|.+| ..|..+|.+|.++|+| ++|++.
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~-----------------------q~AIEa 1243 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY-----------------------QAAVDG 1243 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 356778999999999999999999997 4688899999999999 999999
Q ss_pred HHHHhhccc-------------------------cchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHH
Q 012162 102 AEKLLNLQS-------------------------NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 156 (469)
Q Consensus 102 ~~~al~l~p-------------------------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 156 (469)
+++|...++ .+++-+..++..|...|.|++|+..++++|.++|.+......+..+
T Consensus 1244 arKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1244 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence 998855543 2444566777788899999999999999999999888777665554
Q ss_pred H
Q 012162 157 E 157 (469)
Q Consensus 157 ~ 157 (469)
-
T Consensus 1324 y 1324 (1630)
T 1xi4_A 1324 Y 1324 (1630)
T ss_pred H
Confidence 3
No 282
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.65 E-value=5.5e-05 Score=75.21 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=66.8
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+...|..++..|+|++|+.+|+++ ..|..+|.++.++|+| ++|++.+
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~y-----------------------q~AVea~ 171 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY-----------------------QAAVDGA 171 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccH-----------------------HHHHHHH
Confidence 47788899999999999999999877 4678889999999999 8888888
Q ss_pred HHHhhcccc---------------------------chHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHH
Q 012162 103 EKLLNLQSN---------------------------SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 155 (469)
Q Consensus 103 ~~al~l~p~---------------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 155 (469)
.++. +|. +++-...+...|...|++++|+..+++++.+++.+-.+...+..
T Consensus 172 ~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~i 249 (449)
T 1b89_A 172 RKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 249 (449)
T ss_dssp HHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8882 221 11112233467888899999999999999999888777777655
Q ss_pred HHH
Q 012162 156 LER 158 (469)
Q Consensus 156 ~~~ 158 (469)
+..
T Consensus 250 l~~ 252 (449)
T 1b89_A 250 LYS 252 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 283
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.55 E-value=0.00014 Score=69.01 Aligned_cols=100 Identities=11% Similarity=-0.012 Sum_probs=82.8
Q ss_pred HhHHHHHHhc--cHHHHHHHHHHHhcCCCC--CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 27 QKGNRAFRES--NFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 27 ~~g~~~~~~~--~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..|...+..| ++.+|...|+++.+..|+ .+..+++ +++++|+| ++|...+
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~-----------------------~eAe~~L 234 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNI-----------------------AEAQGIV 234 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCH-----------------------HHHHHHH
Confidence 3444466556 999999999999888886 3445555 89999999 9999999
Q ss_pred HHHhhc----------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHH
Q 012162 103 EKLLNL----------QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 154 (469)
Q Consensus 103 ~~al~l----------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 154 (469)
+.++++ +|+++.++.++..+...+|+ +|.+.+.++.+.+|+++.+.....
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 988887 58899999999888888897 899999999999999997754443
No 284
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.55 E-value=4.6e-05 Score=58.00 Aligned_cols=44 Identities=25% Similarity=0.555 Sum_probs=34.8
Q ss_pred cccccccccccc-EEccCCCcccHHHHHHHccc-CCCccccccccc
Q 012162 179 DCTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLF 222 (469)
Q Consensus 179 ~C~ic~~~~~~p-~~~~cgh~~C~~Ci~~~~~~-~~~CP~Cr~~~~ 222 (469)
.|+.|.-.+..- ..+||+|.||.+|+..|... .+.||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 477777655443 46899999999999998754 568999999873
No 285
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.54 E-value=0.00026 Score=65.98 Aligned_cols=90 Identities=10% Similarity=-0.074 Sum_probs=68.8
Q ss_pred hcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHH
Q 012162 49 NNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN--SMKSHLLKANALILL 126 (469)
Q Consensus 49 l~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~g~~~~~~ 126 (469)
-+.+|+++.++++.|.+....-.- .-.+...-.++..|...+++|+++||+ +..+|..+|..|...
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~------------~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFAL------------TPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTT------------SCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred HHcCccccHHHHHHHHHHHHHHhc------------CCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence 345778888888888877543211 011233344568899999999999999 566999999999984
Q ss_pred -----hHHHHHHHHHhccccCCCCC-chhH
Q 012162 127 -----ERYDMARDAILSGLQVDPFS-NPLQ 150 (469)
Q Consensus 127 -----~~~~~A~~~~~~al~~~p~~-~~~~ 150 (469)
|+.++|..+|++|++++|+. ....
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~ 242 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHH 242 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCTTCSHHH
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCchHH
Confidence 99999999999999999975 5443
No 286
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0002 Score=71.08 Aligned_cols=103 Identities=9% Similarity=0.042 Sum_probs=69.9
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc------------------------------------------
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------------------------------------------ 56 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~------------------------------------------ 56 (469)
.....++...|..++..|+|++|+..|.++++..+...
T Consensus 52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 33456678889999999999999999988876544321
Q ss_pred ----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc------cccchHHHHHHHHHHHHH
Q 012162 57 ----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL------QSNSMKSHLLKANALILL 126 (469)
Q Consensus 57 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~~~~~~~g~~~~~~ 126 (469)
.++.++|.+|...|+| .+|+..+.+++.. .+....++...|.+|..+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~-----------------------~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQY-----------------------KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL 188 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCh-----------------------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 2334556666666666 6777766666553 344455677777777777
Q ss_pred hHHHHHHHHHhccccCCC
Q 012162 127 ERYDMARDAILSGLQVDP 144 (469)
Q Consensus 127 ~~~~~A~~~~~~al~~~p 144 (469)
|+|++|...|++++.+.+
T Consensus 189 ~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 189 RNLAKSKASLTAARTAAN 206 (434)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhh
Confidence 777777777777766544
No 287
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.43 E-value=0.00022 Score=60.46 Aligned_cols=94 Identities=9% Similarity=0.036 Sum_probs=78.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcc---------cccchhHHHHHHHhhhccCCCCCcccCccCCCCCch
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI---------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 93 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (469)
..+++....++..|.|+.|+..+..++.+..+++. ++...|.+++..++|
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~ey--------------------- 79 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEY--------------------- 79 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHH---------------------
Confidence 45778889999999999999999998888655554 678899999999999
Q ss_pred hHHHHHHHHHHHhhccc---c----------------------chHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 94 HAELALKDAEKLLNLQS---N----------------------SMKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p---~----------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
..|...|++||++.- + ..+..|.+|.||..+|++++|+..++..
T Consensus 80 --rrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 80 --RNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --HHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred --HHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 999999999876431 1 1267799999999999999999998864
No 288
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00022 Score=70.80 Aligned_cols=96 Identities=10% Similarity=0.042 Sum_probs=75.3
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHhcCCCCCccc-----------------ccchhHHHHHHHhhhccCCCCCcccCccC
Q 012162 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIV-----------------LGNRSSAYIRISQFLKHRPPSASEYRPLN 87 (469)
Q Consensus 25 ~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~-----------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 87 (469)
...+|..+.+.|+|++|++.|.++++.+|..... +.++|.+|...|+|
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~--------------- 71 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAK--------------- 71 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCH---------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCH---------------
Confidence 4678999999999999999999999999986543 56788999999999
Q ss_pred CCCCchhHHHHHHHHHHHhhccccchHH------HHHHHHHHHHHhHHHHHHHHHhccccCC
Q 012162 88 GLDPTTHAELALKDAEKLLNLQSNSMKS------HLLKANALILLERYDMARDAILSGLQVD 143 (469)
Q Consensus 88 ~~~~~~~~~~A~~~~~~al~l~p~~~~~------~~~~g~~~~~~~~~~~A~~~~~~al~~~ 143 (469)
++|+..+.+++++.+...++ +..+|.++...|++++|+..+++++...
T Consensus 72 --------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (434)
T 4b4t_Q 72 --------DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA 125 (434)
T ss_dssp --------HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999988876554332 3345666666777777777777776553
No 289
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.18 E-value=0.0003 Score=78.49 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=57.9
Q ss_pred CCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHH
Q 012162 53 PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMA 132 (469)
Q Consensus 53 p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A 132 (469)
.+.+.+|+++|.++...|++ .+|+..|.+| +++.+|+.+|.++..+|+|++|
T Consensus 1102 vn~p~vWsqLAKAql~~G~~-----------------------kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMV-----------------------KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCH-----------------------HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHH
Confidence 35678899999999999999 9999999886 8889999999999999999999
Q ss_pred HHHHhccccCCCC
Q 012162 133 RDAILSGLQVDPF 145 (469)
Q Consensus 133 ~~~~~~al~~~p~ 145 (469)
+++|..|.+..++
T Consensus 1154 IeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1154 VKYLQMARKKARE 1166 (1630)
T ss_pred HHHHHHHHhhccc
Confidence 9999999988755
No 290
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.12 E-value=0.00049 Score=68.92 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=70.2
Q ss_pred CCChhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC-----CCCC---cccccchhHHHHHHHhhhccCCCCCcccC
Q 012162 13 SLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYR 84 (469)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (469)
.+.+.....+..+.+.|..|..+|+|++|+.+|.+++++ .|++ +..++++|.+|..+|+|
T Consensus 320 ~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~------------ 387 (429)
T 3qwp_A 320 RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMF------------ 387 (429)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH------------
T ss_pred cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCH------------
Confidence 344556667888999999999999999999999999976 3444 47789999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHhhc-----cccchHH---HHHHHHHHH
Q 012162 85 PLNGLDPTTHAELALKDAEKLLNL-----QSNSMKS---HLLKANALI 124 (469)
Q Consensus 85 ~~~~~~~~~~~~~A~~~~~~al~l-----~p~~~~~---~~~~g~~~~ 124 (469)
++|+..+++|+++ .|+++.. +..++.+..
T Consensus 388 -----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 388 -----------PQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999884 4666543 344444443
No 291
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.11 E-value=0.00012 Score=68.94 Aligned_cols=49 Identities=22% Similarity=0.651 Sum_probs=38.4
Q ss_pred ccccccccccccccc----cE----EccCCCcccHHHHHHHcccC-----------CCcccccccccc
Q 012162 175 TDDFDCTLCLKLLYE----PI----TTPCGHSFCRSCLFQSMDRG-----------NKCPLCRAVLFI 223 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~----p~----~~~cgh~~C~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 223 (469)
+....|+||+..+.+ |. ...|||.|...||.+|+... ..||.||.+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456689999988776 31 14799999999999998631 359999998853
No 292
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.10 E-value=0.00028 Score=49.42 Aligned_cols=47 Identities=28% Similarity=0.478 Sum_probs=38.1
Q ss_pred cccccccccccccccEEccCC--C---cccHHHHHHHccc--CCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCG--H---SFCRSCLFQSMDR--GNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cg--h---~~C~~Ci~~~~~~--~~~CP~Cr~~~~ 222 (469)
+...|.||+....+|...||. + .|...|+.+|+.. +..||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455899999887778778865 4 7999999999974 458999998763
No 293
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.92 E-value=0.00089 Score=64.82 Aligned_cols=92 Identities=10% Similarity=-0.033 Sum_probs=71.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
+..+...|..++..|++++|+..+++|+.++|+ ..+|..+|.++...|++ ++|+..
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~-----------------------~eA~e~ 332 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMN-----------------------REAADA 332 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 455556677778889999999999999999974 66778889999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHH-HHHhHHHHHHHHHh
Q 012162 102 AEKLLNLQSNSMKSHLLKANAL-ILLERYDMARDAIL 137 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~-~~~~~~~~A~~~~~ 137 (469)
+++|+.++|..+..++..+.++ ..+...+-++..|.
T Consensus 333 ~~~AlrL~P~~~t~~~~~~l~F~sn~~~i~~~~~~~~ 369 (372)
T 3ly7_A 333 YLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFL 369 (372)
T ss_dssp HHHHHHHSCSHHHHHHHHHSSSCCCHHHHCHHHHHHH
T ss_pred HHHHHhcCCCcChHHHHhCceeecchhhhHHHHHhcc
Confidence 9999999998864333333333 45666666665553
No 294
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.92 E-value=0.00048 Score=69.00 Aligned_cols=79 Identities=8% Similarity=-0.040 Sum_probs=66.2
Q ss_pred CChhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC-----CCC---CcccccchhHHHHHHHhhhccCCCCCcccCc
Q 012162 14 LPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPG---DPIVLGNRSSAYIRISQFLKHRPPSASEYRP 85 (469)
Q Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~-----~p~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 85 (469)
+.++....+..+.+.|..|..+|+|++|+.+|++++++ .|+ -+..++++|.+|..+|+|
T Consensus 332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~------------- 398 (433)
T 3qww_A 332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK------------- 398 (433)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH-------------
T ss_pred cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCH-------------
Confidence 34455566888899999999999999999999999976 344 447789999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHhhc-----cccchHH
Q 012162 86 LNGLDPTTHAELALKDAEKLLNL-----QSNSMKS 115 (469)
Q Consensus 86 ~~~~~~~~~~~~A~~~~~~al~l-----~p~~~~~ 115 (469)
++|+..+++|+++ .|+++..
T Consensus 399 ----------~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 399 ----------AAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999985 5777654
No 295
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.90 E-value=0.0011 Score=65.95 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=86.0
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccc------------------------------hhHHHHHHH
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGN------------------------------RSSAYIRIS 70 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~------------------------------~a~~~~~~~ 70 (469)
++..+...|..+.+.|+|++|++.|.+|. ++..|.. +...|.+.|
T Consensus 147 ~a~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 147 NVSNFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRG 221 (449)
T ss_dssp HTTCHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HhhhHHHHHHHHHHhccHHHHHHHHHHcC-----CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCC
Confidence 34556678899999999999999999993 3333333 234566667
Q ss_pred hhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHH--HHhHHHHHHHHHhccccCCC----
Q 012162 71 QFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALI--LLERYDMARDAILSGLQVDP---- 144 (469)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~--~~~~~~~A~~~~~~al~~~p---- 144 (469)
++ ++|+..+++++.+++.+...+..+|.+|. +-++..++++.|...+.+.|
T Consensus 222 ~~-----------------------eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 222 YF-----------------------EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp CH-----------------------HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred CH-----------------------HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77 99999999999999999999999999884 78999999999999999888
Q ss_pred -CCchhHHHHHHHH
Q 012162 145 -FSNPLQASLQNLE 157 (469)
Q Consensus 145 -~~~~~~~~~~~~~ 157 (469)
.+...+..+.-+-
T Consensus 279 ~~~~~~w~e~~~ly 292 (449)
T 1b89_A 279 AEQAHLWAELVFLY 292 (449)
T ss_dssp HHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 6666665554433
No 296
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.46 E-value=0.0064 Score=64.37 Aligned_cols=117 Identities=13% Similarity=0.010 Sum_probs=89.4
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcC-CCCCcccccchhHHHHHHHh-hhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNI-KPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~-~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
..+...+....+.|+.+.|...|.+|++. .+....+|...|..-.+.++ + +.|..
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~-----------------------e~Ar~ 491 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT-----------------------KTACK 491 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC-----------------------HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH-----------------------HHHHH
Confidence 45666667777789999999999999998 44445555544444444433 5 89999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC---CchhHHHHHHHHHhhhh
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF---SNPLQASLQNLERTTAS 162 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~ 162 (469)
.|+++++..|+++..+...+......|+.+.|...|++|+...|+ ...+......+|+..+.
T Consensus 492 ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 492 VLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999998888888888999999999999999999884 34455555556555443
No 297
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.40 E-value=0.0053 Score=49.67 Aligned_cols=78 Identities=13% Similarity=0.004 Sum_probs=63.5
Q ss_pred HHHHHhHHHHHHhccHHH---HHHHHHHHhcCC-C-CCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 23 FDLVQKGNRAFRESNFEE---AISNYSRANNIK-P-GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~---A~~~y~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
..-++.|..+.+..+... +|..++..++.+ | ..-+.++.+|..++++|+| .+
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y-----------------------~~ 92 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-----------------------EK 92 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH-----------------------HH
Confidence 444566666666555544 999999999987 5 4668899999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHH
Q 012162 98 ALKDAEKLLNLQSNSMKSHLLKANAL 123 (469)
Q Consensus 98 A~~~~~~al~l~p~~~~~~~~~g~~~ 123 (469)
|...++..|+.+|+|..|...+..+-
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999988877665553
No 298
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.24 E-value=0.015 Score=57.15 Aligned_cols=100 Identities=17% Similarity=0.037 Sum_probs=79.2
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc----------------------ccccchhHHHHHHHhhhccC
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----------------------IVLGNRSSAYIRISQFLKHR 76 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~----------------------~~~~~~a~~~~~~~~~~~~~ 76 (469)
......+...|......|+.+.|+..+.+|+.+-...+ .+...++.++...|++
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~---- 187 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRA---- 187 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----
Confidence 33456677778888888999999999999999843321 1112234455666788
Q ss_pred CCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 77 PPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
.+|+..+.+++..+|-+-.+|..+-.+|...|+..+|+..|++.-+
T Consensus 188 -------------------~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 -------------------SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp -------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988633
No 299
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.81 E-value=0.072 Score=44.21 Aligned_cols=104 Identities=15% Similarity=0.002 Sum_probs=80.8
Q ss_pred HHHHHHhHHHHHHhccH------HHHHHHHHHHhcCCCCCcccccchhHHHH--------HHHhhhccCCCCCcccCccC
Q 012162 22 VFDLVQKGNRAFRESNF------EEAISNYSRANNIKPGDPIVLGNRSSAYI--------RISQFLKHRPPSASEYRPLN 87 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~------~~A~~~y~~al~~~p~~~~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~ 87 (469)
.+.+..-....-+.|+. ++-++.|++|+..-|-.. --.++..+|+ .+++.
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~~ei~D~--------------- 76 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAELKAIQEP--------------- 76 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHHHHHHCG---------------
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHHHHhcCH---------------
Confidence 45555555566666888 888999999998877553 3344444433 33555
Q ss_pred CCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 88 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 88 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
++|-..|+.++++....++.|...|..-...|+...|+..+.+|+.+.|...+.
T Consensus 77 --------d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 77 --------DDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp --------GGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred --------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 889999999999988888888888888889999999999999999999987653
No 300
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.71 E-value=0.012 Score=47.74 Aligned_cols=78 Identities=8% Similarity=0.023 Sum_probs=62.3
Q ss_pred HHHhHHHHHHh---ccHHHHHHHHHHHhcCCCC-CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 25 LVQKGNRAFRE---SNFEEAISNYSRANNIKPG-DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 25 ~~~~g~~~~~~---~~~~~A~~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
-++.|-.+.+. .+..++|..++..++.+|. .-+.++.+|..++++|+| ..|..
T Consensus 43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY-----------------------~~Ar~ 99 (134)
T 3o48_A 43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-----------------------SMAKR 99 (134)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH-----------------------HHHHH
Confidence 34444444443 3556899999999998884 468899999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHH
Q 012162 101 DAEKLLNLQSNSMKSHLLKANALIL 125 (469)
Q Consensus 101 ~~~~al~l~p~~~~~~~~~g~~~~~ 125 (469)
.++.+++.+|+|..|......+-.+
T Consensus 100 y~d~lL~~eP~N~QA~~Lk~~Ie~k 124 (134)
T 3o48_A 100 YVDTLFEHERNNKQVGALKSMVEDK 124 (134)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999999999999887776665433
No 301
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=95.60 E-value=0.083 Score=49.61 Aligned_cols=175 Identities=11% Similarity=0.013 Sum_probs=91.4
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc--------cc--ccchhHHHH-----HHHhhhccCCCCCccc
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP--------IV--LGNRSSAYI-----RISQFLKHRPPSASEY 83 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~--------~~--~~~~a~~~~-----~~~~~~~~~~~~~~~~ 83 (469)
..........|..++..|+|++|+..|+.+|-.-|-.. .+ +..++.-|. .+.+- ..+.
T Consensus 111 l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr--~l~~----- 183 (325)
T 3mv2_A 111 LDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERR--SLKE----- 183 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCT-----
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCc-----
Confidence 33445566789999999999999999999986644211 11 111111111 11111 0000
Q ss_pred CccCCCCCchhHHHHH--HHHHHHhhccccchHHHHHHHHH-HHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 84 RPLNGLDPTTHAELAL--KDAEKLLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 84 ~~~~~~~~~~~~~~A~--~~~~~al~l~p~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
+.....+ ..|=...++.|.+-..-.+.|+. .++.++|--|....++.|+++|..+.+.. .++.+
T Consensus 184 ---------~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q----Arkil 250 (325)
T 3mv2_A 184 ---------GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ----ARKIK 250 (325)
T ss_dssp ---------TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH----HHHHH
T ss_pred ---------ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH----HHHHH
Confidence 0001111 12223345666665555555654 47899999999999999999996544433 33333
Q ss_pred hhhhcccCC----CCCCCcccccccccccccc--ccEE--ccCCCcccHHHHHHHcccCCCcccccc
Q 012162 161 ASLIGRRIH----GTPERTDDFDCTLCLKLLY--EPIT--TPCGHSFCRSCLFQSMDRGNKCPLCRA 219 (469)
Q Consensus 161 ~~~~~~~~~----~~~~~~~~~~C~ic~~~~~--~p~~--~~cgh~~C~~Ci~~~~~~~~~CP~Cr~ 219 (469)
....++... ......+-..|...+..+. .|.. .-||-.|.... .+..|++|.-
T Consensus 251 ~~ce~~~~Da~eidyD~~~~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l 311 (325)
T 3mv2_A 251 NKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITE------KDKIDRIAMI 311 (325)
T ss_dssp HHHHTSCCCSSCCSCCTTSCEEECTTTCCEEESSSCEEECTTTCCEEEGGG------TTSBCSSSSC
T ss_pred HHHhcCCCCccccCCCCCCCceeecCCcccccCCCCCccCCCCCCeechhh------CCCCCCCCcC
Confidence 322221111 1111222334555554322 3322 23555555432 4668999974
No 302
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.54 E-value=0.025 Score=59.85 Aligned_cols=97 Identities=7% Similarity=-0.049 Sum_probs=81.0
Q ss_pred HHHHHhHHHHHHhccHHHHH-HHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAI-SNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~-~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
..+...|......|+.++|+ ..|.+|+...|.+..+|...+......|++ +.|...
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~-----------------------e~aR~i 400 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKI-----------------------PEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 44555666667788888997 999999999999888888888888888988 999999
Q ss_pred HHHHhhcc-----------c-----------cchHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 102 AEKLLNLQ-----------S-----------NSMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 102 ~~~al~l~-----------p-----------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
++++++.- | +...+|...+......|..+.|+..|.+|++.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998752 4 24557888888888899999999999999987
No 303
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.25 E-value=0.0061 Score=47.51 Aligned_cols=31 Identities=23% Similarity=0.652 Sum_probs=26.8
Q ss_pred ccccccccccc-ccccEE--ccCCCcccHHHHHH
Q 012162 176 DDFDCTLCLKL-LYEPIT--TPCGHSFCRSCLFQ 206 (469)
Q Consensus 176 ~~~~C~ic~~~-~~~p~~--~~cgh~~C~~Ci~~ 206 (469)
++..|++|.+. +..|+. +.|+|+||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 35789999964 778887 89999999999997
No 304
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.02 E-value=0.039 Score=46.66 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=58.8
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCC---CCC----------------------cccccchhHHHHHHHhhhcc
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIK---PGD----------------------PIVLGNRSSAYIRISQFLKH 75 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~---p~~----------------------~~~~~~~a~~~~~~~~~~~~ 75 (469)
.++.+...|+.+|..|+|..|...|++||++. +.. .++.+.+|.||.+++++
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~--- 138 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD--- 138 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH---
Confidence 46778889999999999999999999997551 111 15678899999999999
Q ss_pred CCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHH
Q 012162 76 RPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANAL 123 (469)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 123 (469)
.+|+..++..-. .-..++.-..+|..|
T Consensus 139 --------------------~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 139 --------------------KDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------HHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred --------------------HHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 999988765422 234566666666554
No 305
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.01 E-value=0.2 Score=47.01 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=91.0
Q ss_pred hHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc--------cc--ccchhHHHH-----HHHhhhccCCCCCcccCc
Q 012162 21 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP--------IV--LGNRSSAYI-----RISQFLKHRPPSASEYRP 85 (469)
Q Consensus 21 ~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~--------~~--~~~~a~~~~-----~~~~~~~~~~~~~~~~~~ 85 (469)
........|..++..|+|++|+..|+.+|-.-|-.. .+ +..++.-|. .+.+- +.+.
T Consensus 101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr--~l~~------- 171 (320)
T 3mkr_B 101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERK--KLPK------- 171 (320)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TSCC-------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccc-------
Confidence 344566889999999999999999999987655221 11 111111111 11111 0000
Q ss_pred cCCCCCchhHHHHH--HHHHHHhhccccchHHHHHHHHH-HHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhhhh
Q 012162 86 LNGLDPTTHAELAL--KDAEKLLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 162 (469)
Q Consensus 86 ~~~~~~~~~~~~A~--~~~~~al~l~p~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 162 (469)
.+ .+.....+ ..|=...++.|.+-..-.+.|+. .++.++|--|...-++.|++.|+.+.+. ..++.+..
T Consensus 172 ---~~-~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~----qArkil~~ 243 (320)
T 3mkr_B 172 ---ET-LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQ----QTRKILSA 243 (320)
T ss_dssp ---CS-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHH----HHHHHHHH
T ss_pred ---CC-chhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH----HHHHHHHH
Confidence 00 00111111 12223345667665555555654 4789999999999999999988643332 23333322
Q ss_pred hhcc---c-CCCCCCCcccccccccccccc--ccEE--ccCCCcccHHHHHHHcccCCCccccccc
Q 012162 163 LIGR---R-IHGTPERTDDFDCTLCLKLLY--EPIT--TPCGHSFCRSCLFQSMDRGNKCPLCRAV 220 (469)
Q Consensus 163 ~~~~---~-~~~~~~~~~~~~C~ic~~~~~--~p~~--~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~ 220 (469)
..++ . ........+-..|...+..+. .|.. -=||-.|+... .+..|++|.-.
T Consensus 244 ce~~~~da~eidyD~~~~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l~ 303 (320)
T 3mkr_B 244 CEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTTVT 303 (320)
T ss_dssp HHHSCCBSSCCSCCTTSCCCBBTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTSSB
T ss_pred HhcCCCCccccCCCCCCccceecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCcCc
Confidence 2221 1 111112222335655554332 2322 23555554432 46679999743
No 306
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.92 E-value=0.062 Score=44.18 Aligned_cols=78 Identities=8% Similarity=0.040 Sum_probs=61.7
Q ss_pred HHHHHhHHHHHHh---ccHHHHHHHHHHHhcCCCC-CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHH
Q 012162 23 FDLVQKGNRAFRE---SNFEEAISNYSRANNIKPG-DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 98 (469)
Q Consensus 23 ~~~~~~g~~~~~~---~~~~~A~~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 98 (469)
+.-++.|..+.+. .+-.++|..++..++.+|. .-+.++.+|..++++|+| .+|
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y-----------------------~~A 96 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-----------------------SMA 96 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH-----------------------HHH
Confidence 3344455555544 3456799999999998884 457899999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHH
Q 012162 99 LKDAEKLLNLQSNSMKSHLLKANAL 123 (469)
Q Consensus 99 ~~~~~~al~l~p~~~~~~~~~g~~~ 123 (469)
...++..|+.+|+|..|......+-
T Consensus 97 r~y~d~lL~~eP~n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 97 KRYVDTLFEHERNNKQVGALKSMVE 121 (144)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999999999988766655443
No 307
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.17 E-value=0.047 Score=49.53 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=37.8
Q ss_pred cccccccccccccccEE-ccCCCcccHHHHHHHcccC--CCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRG--NKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~--~~CP~Cr~~~~ 222 (469)
....|.+|..+...-+. -.|+|.|...|+..|+... ..||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 36689999998775544 4599999999999998753 48999998763
No 308
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.56 E-value=0.3 Score=49.45 Aligned_cols=134 Identities=12% Similarity=-0.073 Sum_probs=68.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHH---HHHhhhccCCCCC---------cccCccC--
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYI---RISQFLKHRPPSA---------SEYRPLN-- 87 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~---~~~~~~~~~~~~~---------~~~~~~~-- 87 (469)
...+...+..+...|+.++|...|.+|+.. |.+..++...+...- ..++......... .....+|
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 345666677777889999999999999999 988755543222100 0000000000000 0000000
Q ss_pred ---CCCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-HHHHHHHHHhccccCCCCCchhHHHHHHHH
Q 012162 88 ---GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE-RYDMARDAILSGLQVDPFSNPLQASLQNLE 157 (469)
Q Consensus 88 ---~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 157 (469)
..-.....+.|...+++| +..+.....|...|..-...+ +++.|...|+.+++..|+++........++
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 000000125566666777 322223445555555555555 477788888888877777665433333333
No 309
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.51 E-value=0.2 Score=45.82 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=58.9
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc
Q 012162 29 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 108 (469)
Q Consensus 29 g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 108 (469)
...+++.|+.++|++.....++-+|.|+.....+-..+.-.|+| +.|.+.++.+.++
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w-----------------------~RA~~QL~~~a~l 60 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF-----------------------ERADEQLMQSIKL 60 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999 9999999999999
Q ss_pred cccchHH
Q 012162 109 QSNSMKS 115 (469)
Q Consensus 109 ~p~~~~~ 115 (469)
+|.....
T Consensus 61 ~p~~~~~ 67 (273)
T 1zbp_A 61 FPEYLPG 67 (273)
T ss_dssp CGGGHHH
T ss_pred CchhhHH
Confidence 9998554
No 310
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.49 E-value=0.45 Score=48.16 Aligned_cols=110 Identities=10% Similarity=-0.103 Sum_probs=78.3
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHH-hhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
..+...+....+.++.+.|...|.+| +..+.....|...|..-+..+ +. +.|...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~-----------------------~~ar~i 342 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR-----------------------ATPYNI 342 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh-----------------------HHHHHH
Confidence 34555566666778899999999999 433223344444444444455 46 899999
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHhh
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 160 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 160 (469)
++.+++.-|+.+..+...+......|+.+.|...|+++. ....+......++...
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
Confidence 999999999988887777887889999999999999983 2344444444444443
No 311
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.00 E-value=0.059 Score=40.20 Aligned_cols=46 Identities=24% Similarity=0.484 Sum_probs=36.2
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
..+.|..|....+. .+.=..|-+|..|+.-.+..+..||+|..++.
T Consensus 27 G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccccCC-eeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 34579989755552 23345699999999999999999999999884
No 312
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.17 Score=53.70 Aligned_cols=45 Identities=33% Similarity=0.183 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 140 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 140 (469)
+.|+..+++|+...|.....|+.++.+|..+|+|+.|+-.+..+=
T Consensus 354 elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 354 ELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999998888763
No 313
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.78 E-value=0.33 Score=49.08 Aligned_cols=79 Identities=14% Similarity=0.006 Sum_probs=70.9
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 103 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 103 (469)
-+...|+.+.-+..+..|..+|.+|+.+.|++...|+.+|..+...|+. -.|+-+|.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~-----------------------l~a~y~y~ 210 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH-----------------------LTTIFYYC 210 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH-----------------------HHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccccc-----------------------HHHHHHHH
Confidence 4567899888889999999999999999999999999999999988888 88999999
Q ss_pred HHhhccccchHHHHHHHHHHHH
Q 012162 104 KLLNLQSNSMKSHLLKANALIL 125 (469)
Q Consensus 104 ~al~l~p~~~~~~~~~g~~~~~ 125 (469)
+++......+.+.-++...+..
T Consensus 211 rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 211 RSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCChhHHHHHHHHHHH
Confidence 9999887788999888887754
No 314
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.12 E-value=0.34 Score=51.45 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=47.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhh
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 72 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 72 (469)
+.-|..++..+..+|+|+-|+...++|+...|.+-..|+.+|.+|..+|+|
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~ 387 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEY 387 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccH
Confidence 345667888899999999999999999999999999999999999999999
No 315
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=88.86 E-value=1.3 Score=44.72 Aligned_cols=99 Identities=8% Similarity=-0.016 Sum_probs=75.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcC--CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 99 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 99 (469)
...+...-..+.+.|++++|...|.+..+. .| +...|..+-.+|.+.|+. ++|.
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~-----------------------~~A~ 160 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDA-----------------------DKAY 160 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCH-----------------------HHHH
Confidence 344555567788899999999999987764 34 455667777788888988 9999
Q ss_pred HHHHHHhhc--cccchHHHHHHHHHHHHHhHHHHHHHHHhcccc--CCCC
Q 012162 100 KDAEKLLNL--QSNSMKSHLLKANALILLERYDMARDAILSGLQ--VDPF 145 (469)
Q Consensus 100 ~~~~~al~l--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 145 (469)
..+++..+. .|+ ...|..+-.+|...|+.++|...|++.-+ ..|+
T Consensus 161 ~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 161 EVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 999887764 454 46788888899999999999999988643 3454
No 316
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.33 E-value=0.24 Score=47.37 Aligned_cols=64 Identities=20% Similarity=0.457 Sum_probs=45.6
Q ss_pred ccccccccccccccccEE-ccCCCcccHHH--HHHHccc--CCCccccccccccCCCcccCcccHHHHHHH
Q 012162 175 TDDFDCTLCLKLLYEPIT-TPCGHSFCRSC--LFQSMDR--GNKCPLCRAVLFITPRTCAVSVTLNSIIQK 240 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~-~~cgh~~C~~C--i~~~~~~--~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~~ 240 (469)
.-.+.||+....+..|+. ..|.|.-|.+- +...... .-.||+|.+.+.. .++.++..+.+++..
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~--~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL--ENLAISEFVDDILQN 315 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG--GGEEEBHHHHHHHTT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH--HHeeEcHHHHHHHHh
Confidence 456799999999999987 68999955443 4443332 3479999988743 577777776666543
No 317
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.39 E-value=0.81 Score=46.20 Aligned_cols=64 Identities=9% Similarity=-0.210 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
..|..+|.+|+.+.|++...|..+|.+....|++-+|+-+|-+++....-.+.+..++..+-++
T Consensus 169 ~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999998776677777776665444
No 318
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.53 E-value=0.36 Score=46.00 Aligned_cols=63 Identities=19% Similarity=0.333 Sum_probs=45.3
Q ss_pred ccccccccccccccccEE-ccCCCccc--HHHHHHHccc--CCCccccccccccCCCcccCcccHHHHHH
Q 012162 175 TDDFDCTLCLKLLYEPIT-TPCGHSFC--RSCLFQSMDR--GNKCPLCRAVLFITPRTCAVSVTLNSIIQ 239 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~-~~cgh~~C--~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~~~~~l~~~~~ 239 (469)
.-.+.||+....+..|+. ..|.|.-| ..-+...... .-.||+|.+.+.. .++.++..+.+++.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~--~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY--ESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG--GGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH--HHeEEcHHHHHHHH
Confidence 456799999999999987 69999944 4444444333 3479999998743 57777766666654
No 319
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.43 E-value=0.74 Score=42.13 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
++|+..+...++-+|.+.+.-..+-+.+.-.|+++.|...++-+.+++|+.....
T Consensus 14 ~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 14 QQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999999999999999999999999999999999999876543
No 320
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=84.28 E-value=2.5 Score=35.68 Aligned_cols=95 Identities=11% Similarity=0.118 Sum_probs=72.6
Q ss_pred HhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHh
Q 012162 27 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 106 (469)
Q Consensus 27 ~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 106 (469)
..+-.++-.|.|..|+-++.. + +.....+..+.||.++++| ..|+..++..+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~---l--NT~Ts~YYk~LCy~klKdY-----------------------kkA~~~le~il 89 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK---L--NTCTSKYYESLCYKKKKDY-----------------------KKAIKSLESIL 89 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT---C--CBHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHH
T ss_pred hhhhhhhhcchHhHHHHHHHh---c--chHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 356777888999888877643 2 2345566678999999999 99999999988
Q ss_pred --hc---------------cccchHH-HHHHHHHHHHHhHHHHHHHHHhccccCCCCCchh
Q 012162 107 --NL---------------QSNSMKS-HLLKANALILLERYDMARDAILSGLQVDPFSNPL 149 (469)
Q Consensus 107 --~l---------------~p~~~~~-~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (469)
+. ||.+-+. +..+|..+...|.-++|+.+|......+|-.+.+
T Consensus 90 ~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 90 EGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp TTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred hcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 22 3555454 4457889999999999999999999888765544
No 321
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.86 E-value=0.91 Score=44.97 Aligned_cols=96 Identities=6% Similarity=-0.015 Sum_probs=70.7
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC---cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
.+..+|..+++.||+++|++.|.++....... ..++.....+++..++| ..+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~-----------------------~~~~~ 189 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQ-----------------------LYVKE 189 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 45678999999999999999999988764443 25666667777888899 88888
Q ss_pred HHHHHhhcc---ccc---hHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 101 DAEKLLNLQ---SNS---MKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 101 ~~~~al~l~---p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
...++-.+- +++ .......|.++...++|.+|-..|..++.-
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 888875542 221 123344577778899999999988887653
No 322
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.23 E-value=1.4 Score=42.96 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=53.8
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 102 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 102 (469)
..+...+..+...|++.+|+..+.+++..+|-+-.+|..+-.+|+..|+. .+|+..|
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~-----------------------~~Al~~y 228 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQ-----------------------SDALGAY 228 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 34455677788999999999999999999999999999999999999999 8999888
Q ss_pred HHHhh
Q 012162 103 EKLLN 107 (469)
Q Consensus 103 ~~al~ 107 (469)
+++-+
T Consensus 229 ~~~r~ 233 (388)
T 2ff4_A 229 RRVKT 233 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76533
No 323
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.07 E-value=8.6 Score=32.74 Aligned_cols=84 Identities=10% Similarity=-0.055 Sum_probs=47.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
...|...|..+...|+++-|..+|.++=. +..+...|...|+- +.-...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~-----------------------e~L~kl 82 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDV-----------------------NKLSKM 82 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 34566777777777777777777776543 22334445555554 332222
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
.+.+...+ ++ .....++..+|+++++++.|.+.-+
T Consensus 83 a~iA~~~g-~~----n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 83 QNIAQTRE-DF----GSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHTT-CH----HHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHCc-cH----HHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 23332222 21 2234456788999999988877544
No 324
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.16 E-value=2.1 Score=41.65 Aligned_cols=92 Identities=12% Similarity=-0.024 Sum_probs=66.5
Q ss_pred HhHHHHHHhccHHHHHHHHHHHhcCCC--CCc----ccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHH
Q 012162 27 QKGNRAFRESNFEEAISNYSRANNIKP--GDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 100 (469)
Q Consensus 27 ~~g~~~~~~~~~~~A~~~y~~al~~~p--~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 100 (469)
..|..++..|+|.+|...+.+.++.-. ++. +++......|..++++ .++..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~-----------------------~k~k~ 160 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL-----------------------PKARA 160 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 678999999999999999998876422 122 4555666778888888 77777
Q ss_pred HHHHHhhcc------cc-chHHHHHHHHHHH-HHhHHHHHHHHHhcccc
Q 012162 101 DAEKLLNLQ------SN-SMKSHLLKANALI-LLERYDMARDAILSGLQ 141 (469)
Q Consensus 101 ~~~~al~l~------p~-~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~ 141 (469)
.+.+|.... |. .......-|..+. ..++|..|-..|-.+++
T Consensus 161 ~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 161 ALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 776665433 22 1233444577888 89999999999998864
No 325
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=79.41 E-value=1.8 Score=31.96 Aligned_cols=35 Identities=29% Similarity=0.262 Sum_probs=30.7
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
.....|..+..+|...=+.|+|++|+.+|..|++.
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45567888999999999999999999999999874
No 326
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=74.86 E-value=3.5 Score=30.35 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.6
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
....|..+..+|...=+.|+|++|+.+|..|++.
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999999874
No 327
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=74.85 E-value=3.8 Score=30.41 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=29.0
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
+..+..+..+|..+-..|+|++|+.+|..|++.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999864
No 328
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=73.61 E-value=5.5 Score=29.98 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=31.3
Q ss_pred hhhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 16 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
......+..+..+|...-..|+|++|+.+|..|++.
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456667888999999999999999999999999874
No 329
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=71.88 E-value=7.3 Score=39.25 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=68.7
Q ss_pred ccHHHHHHHHHHHhcC--CCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhc--ccc
Q 012162 36 SNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL--QSN 111 (469)
Q Consensus 36 ~~~~~A~~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--~p~ 111 (469)
++.++|...|.+..+. .| |...|..+-.+|.+.|++ ++|...+++..+. .|+
T Consensus 84 ~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~-----------------------~~A~~l~~~M~~~g~~Pd 139 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDP-----------------------EMAFDMVKQMKAFGIQPR 139 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHHTTCCCC
T ss_pred chHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHcCCCCc
Confidence 4578899999887664 33 456778888899999999 9999999987764 454
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHhccccC--CCCC
Q 012162 112 SMKSHLLKANALILLERYDMARDAILSGLQV--DPFS 146 (469)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~ 146 (469)
...|..+-.+|...|+.++|...|++..+. .|+.
T Consensus 140 -~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 140 -LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred -cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 578888889999999999999999987653 4543
No 330
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=71.70 E-value=4.2 Score=29.03 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHhcCCCCCccc
Q 012162 25 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIV 58 (469)
Q Consensus 25 ~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~ 58 (469)
-...|..+...|++++|+.+|-+|+...|.-..+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3578999999999999999999999998865443
No 331
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.29 E-value=2.4 Score=31.24 Aligned_cols=45 Identities=24% Similarity=0.619 Sum_probs=33.5
Q ss_pred ccccccccccccc-----cEE--ccCCCcccHHHHHHHcccC-CCcccccccc
Q 012162 177 DFDCTLCLKLLYE-----PIT--TPCGHSFCRSCLFQSMDRG-NKCPLCRAVL 221 (469)
Q Consensus 177 ~~~C~ic~~~~~~-----p~~--~~cgh~~C~~Ci~~~~~~~-~~CP~Cr~~~ 221 (469)
.-.|.||.+.+-- +.. -.|+...|+.|.+--...+ ..||.|+.+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 3479999976432 333 4799999999997655544 4799999876
No 332
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=71.06 E-value=4.5 Score=29.83 Aligned_cols=35 Identities=29% Similarity=0.310 Sum_probs=30.5
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
.....+..+..+|...-..|+|++|+.+|..|++.
T Consensus 8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567888999999999999999999999999874
No 333
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=70.27 E-value=6.5 Score=31.00 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
.....|..+..+|...=..|+|++|+.+|..|+++
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999874
No 334
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=69.27 E-value=11 Score=39.66 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=13.8
Q ss_pred HHHHHhHHHHHHHHHhcccc
Q 012162 122 ALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 122 ~~~~~~~~~~A~~~~~~al~ 141 (469)
+|..+|++++|++.|.+.-.
T Consensus 745 ~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHcCC
Confidence 45567888888887766543
No 335
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=65.45 E-value=8.2 Score=40.80 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=20.3
Q ss_pred HHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhh
Q 012162 32 AFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 72 (469)
Q Consensus 32 ~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 72 (469)
+...|+++.|.+... .-+++..|.++|..+.+.+++
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCH
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCH
Confidence 344455555544432 123556677777777777776
No 336
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.88 E-value=6.4 Score=44.13 Aligned_cols=90 Identities=10% Similarity=0.000 Sum_probs=54.5
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHhcCC-CCCc----------------------ccccchhHHHHHHHhhhccCCCCCc
Q 012162 25 LVQKGNRAFRESNFEEAISNYSRANNIK-PGDP----------------------IVLGNRSSAYIRISQFLKHRPPSAS 81 (469)
Q Consensus 25 ~~~~g~~~~~~~~~~~A~~~y~~al~~~-p~~~----------------------~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (469)
-+-+|..++..|++++|..+|.+|-.-- ..+. ..|......+.+.+.+
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~--------- 915 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY--------- 915 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCC---------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCH---------
Confidence 3668999999999999999999984321 1111 1112222222222333
Q ss_pred ccCccCCCCCchhHHHHHHHHHHHhhccccchH-----HHHHHHHHHHHHhHHHHHHHHHh
Q 012162 82 EYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK-----SHLLKANALILLERYDMARDAIL 137 (469)
Q Consensus 82 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-----~~~~~g~~~~~~~~~~~A~~~~~ 137 (469)
+.+++.+..|++..+.+.. .|.++=..+..+|+|++|..++.
T Consensus 916 --------------~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 916 --------------IDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp --------------HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred --------------HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 6677777777765432211 45556666777788888766653
No 337
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=62.83 E-value=15 Score=27.31 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=26.3
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhc
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANN 50 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~ 50 (469)
+.|-.+-.+++.+.+.|.|++||++..+|..
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3466777899999999999999999888764
No 338
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=61.27 E-value=4 Score=32.36 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=37.8
Q ss_pred ccccccccccccc---ccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~---~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.-|.|..|...+. ......-|..||..|..+.+.....|..|..++.
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 4578999998886 3456678899999999888766558999998874
No 339
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.16 E-value=7.9 Score=38.93 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcc-----ccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHH
Q 012162 96 ELALKDAEKLLNLQ-----SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 153 (469)
Q Consensus 96 ~~A~~~~~~al~l~-----p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 153 (469)
+.|.....++.-.. +.....+|.+|.++...++|.+|..++..|+...|.+..+....
T Consensus 248 ~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 248 DSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp TTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 67777777774221 12255678899999999999999999999999998776544333
No 340
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=59.73 E-value=12 Score=38.84 Aligned_cols=80 Identities=11% Similarity=-0.034 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccchHHHH
Q 012162 38 FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHL 117 (469)
Q Consensus 38 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 117 (469)
..++...+.++..... +......++...++.+++ ..|...+.+.-.-......+.|
T Consensus 268 ~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~-----------------------~~a~~~~~~l~~~~~~~~r~~Y 323 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDR-----------------------RGLNTWLARLPMEAKEKDEWRY 323 (618)
T ss_dssp CHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHSCTTGGGSHHHHH
T ss_pred ChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHccccccccHhHHH
Confidence 3345555555443322 222344445455567888 8888888776664456688899
Q ss_pred HHHHHHHHHhHHHHHHHHHhcccc
Q 012162 118 LKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 118 ~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
.+|.++..+|+.++|...|+++..
T Consensus 324 W~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 324 WQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999999999999999999875
No 341
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=59.60 E-value=2.2 Score=32.76 Aligned_cols=28 Identities=21% Similarity=0.617 Sum_probs=18.1
Q ss_pred ccEEccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 189 EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 189 ~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
.|....||++|+ ..+..-..||.|+..-
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 344568999992 2223345899999764
No 342
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=59.45 E-value=14 Score=30.58 Aligned_cols=59 Identities=7% Similarity=-0.085 Sum_probs=46.1
Q ss_pred HHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhccccc
Q 012162 33 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS 112 (469)
Q Consensus 33 ~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 112 (469)
...+|.++|...|+.++++....+.+|...|..-.+.|+. ..|.+.+.+|+.+.|..
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl-----------------------~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNV-----------------------KKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHTTCBC
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccH-----------------------HHHHHHHHHHhccCCCc
Confidence 4558999999999999998555555555555555566777 99999999999999986
Q ss_pred hH
Q 012162 113 MK 114 (469)
Q Consensus 113 ~~ 114 (469)
..
T Consensus 128 ~~ 129 (161)
T 4h7y_A 128 LE 129 (161)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 343
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=59.28 E-value=12 Score=27.48 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=29.9
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCC
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIK 52 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 52 (469)
.+.+..+..+|..+++.++|.+|...|+++..+.
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 3568889999999999999999999999997553
No 344
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=58.57 E-value=7.4 Score=27.96 Aligned_cols=36 Identities=25% Similarity=0.579 Sum_probs=27.8
Q ss_pred Ccccccccccccccccc--EEc--cCCCcccHHHHHHHcc
Q 012162 174 RTDDFDCTLCLKLLYEP--ITT--PCGHSFCRSCLFQSMD 209 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p--~~~--~cgh~~C~~Ci~~~~~ 209 (469)
....+.|.+|.+-+.+. |.- .-+|.||..|-....+
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 45678999999999887 332 3479999999887654
No 345
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=58.56 E-value=8.4 Score=27.47 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHH
Q 012162 117 LLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 152 (469)
Q Consensus 117 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (469)
..+|..+...|++++|..+|-+|+.+.|+-.+...-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i 56 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV 56 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467999999999999999999999999987665433
No 346
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=58.09 E-value=13 Score=28.02 Aligned_cols=33 Identities=12% Similarity=0.318 Sum_probs=28.3
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 55 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~ 55 (469)
..-...|..+...|+++.|+.+|-+|+.+.|.-
T Consensus 21 l~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 21 LEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 344578999999999999999999999987753
No 347
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.52 E-value=28 Score=34.27 Aligned_cols=98 Identities=10% Similarity=-0.060 Sum_probs=68.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcC----CCC--CcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhH
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNI----KPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 95 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~----~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (469)
+.-....+..+...|+|.+|...+.....- ++. -..++......|+..++|
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~----------------------- 193 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDY----------------------- 193 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCH-----------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCH-----------------------
Confidence 444566789999999999999998886532 111 124555667778888999
Q ss_pred HHHHHHHHHHhh---ccccc----hHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 96 ELALKDAEKLLN---LQSNS----MKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 96 ~~A~~~~~~al~---l~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
..|...+.++-. -.+.. ...+...|..+...++|.+|-.+|..++..
T Consensus 194 ~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 194 SQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 888877777532 11222 234555678888999999999999988763
No 348
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=57.52 E-value=9 Score=27.71 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=25.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
.-.....|..+...|||+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 445567899999999999999999999864
No 349
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=57.51 E-value=27 Score=29.62 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=42.8
Q ss_pred HhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHh
Q 012162 27 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 106 (469)
Q Consensus 27 ~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 106 (469)
.+-..+...|+++.|.+..... ++...|..+|...+..|++ .-|...|.++=
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~-----------------------~lAe~cy~~~~ 61 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNA-----------------------SLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCCh-----------------------HHHHHHHHHhC
Confidence 4566788889999999887664 5678899999999999999 88888887763
No 350
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=57.32 E-value=0.9 Score=34.09 Aligned_cols=41 Identities=32% Similarity=0.682 Sum_probs=28.0
Q ss_pred ccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 177 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
...||.|...+.. .-|+.+|..|-.. +.....||.|.+++.
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCccee----cCCEEECccccch-hhccccCcchhhHHH
Confidence 3789999876653 3455569999442 333347999999883
No 351
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=56.55 E-value=14 Score=27.00 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCchhHHHHHHHHHh
Q 012162 94 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 159 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 159 (469)
+...|+..+.+|++.|-. |..-..+.-|.+|++.|..+++..|+...-.....++.+.
T Consensus 7 ~~~~Ai~lv~~Ave~D~~--------g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY 64 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKE--------GKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEY 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 347888888998877532 1222334456777777888777777655433333333333
No 352
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=54.87 E-value=13 Score=27.46 Aligned_cols=49 Identities=22% Similarity=0.214 Sum_probs=27.0
Q ss_pred CCCchhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 89 LDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 89 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
+||+. ..|+....+|++.|-.. ..-..+.-|.+|++.|..++...|+..
T Consensus 9 ~~~~~--~~A~~lv~~Ave~D~~g--------~y~eAl~lY~~Aie~ll~alk~e~d~~ 57 (86)
T 4a5x_A 9 MDPQS--TAAATVLKRAVELDSES--------RYPQALVCYQEGIDLLLQVLKGTKDNT 57 (86)
T ss_dssp --CHH--HHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred CChHH--HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 45555 67788888887764221 112233445666666666666666543
No 353
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=54.48 E-value=52 Score=36.17 Aligned_cols=95 Identities=7% Similarity=-0.102 Sum_probs=74.3
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHhc-----CCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHH
Q 012162 23 FDLVQKGNRAFRESNFEEAISNYSRANN-----IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 97 (469)
Q Consensus 23 ~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (469)
..|...-+.+.+.|+.++|...|.+.-+ ..| |...|+-+-..|.+.|+. ++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~-----------------------~e 183 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAF-----------------------KE 183 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCH-----------------------HH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCH-----------------------HH
Confidence 3455666788999999999999977543 244 567788888899999999 99
Q ss_pred HHHHHHHHhh--ccccchHHHHHHHHHHHHHhH-HHHHHHHHhccccC
Q 012162 98 ALKDAEKLLN--LQSNSMKSHLLKANALILLER-YDMARDAILSGLQV 142 (469)
Q Consensus 98 A~~~~~~al~--l~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~ 142 (469)
|...+++..+ +.|+ ...|..+-.++.+.|+ .++|...|++..+.
T Consensus 184 A~~Lf~eM~~~G~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 184 LVYVLFMVKDAGLTPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 9999998866 4565 5678888888888887 47888888877653
No 354
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=51.33 E-value=12 Score=39.08 Aligned_cols=51 Identities=8% Similarity=0.124 Sum_probs=46.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhh
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 72 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 72 (469)
+..+..+|..++..|+|.-|....+.++..+|+|..+...+|.+|-++|.-
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999999999999999999999999999888854
No 355
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=50.44 E-value=32 Score=32.09 Aligned_cols=46 Identities=11% Similarity=-0.125 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 012162 94 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 139 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 139 (469)
++.+|+.+..+.=...-.++..|..+|..|...|++.+|..+|-.+
T Consensus 115 fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 115 VITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 3466666655553334468899999999999999999999998743
No 356
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=49.61 E-value=7.7 Score=30.91 Aligned_cols=47 Identities=21% Similarity=0.435 Sum_probs=37.8
Q ss_pred ccccccccccccc---ccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~---~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.-|.|..|...+. .+....-|..||..|..+.+.....|..|..++.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 5678999998885 3667788999999999887655448999999874
No 357
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=48.28 E-value=6.1 Score=33.96 Aligned_cols=47 Identities=19% Similarity=0.429 Sum_probs=37.7
Q ss_pred cccccccccccccc---cEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYE---PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~---p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.-|.|..|...+.. +....-|..||..|..+.+.....|+.|.+++.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 56789999988874 666788999999999877654347999999874
No 358
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=48.21 E-value=1.4 Score=32.07 Aligned_cols=39 Identities=26% Similarity=0.593 Sum_probs=23.8
Q ss_pred cccccccccccccEEccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 178 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 178 ~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
..||.|...+.. .-++.+|..|-....... .||.|++++
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEEEEE-ECSSSCSCC
T ss_pred CCCCCCCCcccc----CCCceECccccccCCCcc-cCcchhhHH
Confidence 568888765542 233555777754333222 788888876
No 359
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=47.67 E-value=12 Score=27.81 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012162 113 MKSHLLKANALILLERYDMARDAILSGL 140 (469)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~A~~~~~~al 140 (469)
+-.+-++|..+...|+|++|+...++|.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4567789999999999999987666554
No 360
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=47.62 E-value=43 Score=27.73 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=58.3
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC--cccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 24 DLVQKGNRAFRESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 24 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
.....++.+|-..||.+-|..+.. .+|.. ...-+-+|..|....++. .+....
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls----------------------~eQKen 64 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLT----------------------EEQRQT 64 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSC----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCC----------------------HHHHHH
Confidence 345678899999999999988865 34442 356677888888777661 344444
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhc
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILS 138 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 138 (469)
.-..+.+..+. -+.+=++|...|++++|++.-+.
T Consensus 65 Iln~itlkSde---~yL~YWIyiGRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 65 VSNNITLKTDE---QYMLYWIYIGRSQSEEALELART 98 (161)
T ss_dssp HHHTCCTTSCH---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhhCCccCCH---HHHHHHHHHcCCchHHHHHHHHh
Confidence 44555555432 24445678888999999887554
No 361
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=47.10 E-value=20 Score=24.93 Aligned_cols=45 Identities=20% Similarity=0.473 Sum_probs=30.6
Q ss_pred cccccccccccccccEE-ccCCCcccHHHHHHHcccC----CCcccccccc
Q 012162 176 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRG----NKCPLCRAVL 221 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~-~~cgh~~C~~Ci~~~~~~~----~~CP~Cr~~~ 221 (469)
....|.+|.+.- +-+. -.|...|...|+...+... -.||.|....
T Consensus 11 ~~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCC-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 445799998642 2222 3799999999997665432 3799997643
No 362
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=46.54 E-value=6.7 Score=29.42 Aligned_cols=12 Identities=42% Similarity=0.993 Sum_probs=10.6
Q ss_pred cccHHHHHHHcc
Q 012162 198 SFCRSCLFQSMD 209 (469)
Q Consensus 198 ~~C~~Ci~~~~~ 209 (469)
-||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 363
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=46.50 E-value=6.7 Score=29.47 Aligned_cols=12 Identities=42% Similarity=0.946 Sum_probs=10.6
Q ss_pred cccHHHHHHHcc
Q 012162 198 SFCRSCLFQSMD 209 (469)
Q Consensus 198 ~~C~~Ci~~~~~ 209 (469)
-||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 364
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=45.45 E-value=28 Score=25.39 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 95 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 95 ~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
.+.|+..+.+|++.|-. |..-..+.-|.+|++.|..++...|+...
T Consensus 16 ~~~Ai~lv~~Ave~D~~--------g~y~eAl~lY~~aie~l~~alk~e~d~~~ 61 (83)
T 2w2u_A 16 EEMARKYAINAVKADKE--------GNAEEAITNYKKAIEVLAQLVSLYRDGST 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHHHHSTTSST
T ss_pred HHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 48888888888877532 12223344566777777777777776553
No 365
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=45.31 E-value=27 Score=26.02 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=32.0
Q ss_pred chhHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 92 TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 92 ~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
..+.+.|+..+.+|++.|-.- ..-..+.-|.+|++.|..++...|+..
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g--------~y~eAl~~Y~~Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAES--------RYQQALVCYQEGIDMLLQVLKGTKESS 56 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 344588999999998875331 122334456778888888887776644
No 366
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.53 E-value=87 Score=31.43 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=65.3
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHH-------HHHHHhhhccCCCCCcccCccCCCC
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSA-------YIRISQFLKHRPPSASEYRPLNGLD 90 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (469)
+...+..++-.|..+.-+++|.+|..++..|++..|.+..+.-.+-.+ -+-+|+.
T Consensus 266 n~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~i------------------ 327 (523)
T 4b4t_S 266 SSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDI------------------ 327 (523)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCC------------------
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCC------------------
Confidence 344567777889999999999999999999999998776543333222 2334554
Q ss_pred CchhHHHHHHHHHHHhhccccc---hHHHHHHHHHHH--HHhHHHHHHHHHhccccCCCCCch
Q 012162 91 PTTHAELALKDAEKLLNLQSNS---MKSHLLKANALI--LLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 91 ~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g~~~~--~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
|+ .++ + ..+.. -..|+.++.++. .+..|+.+++.++..+..+....-
T Consensus 328 P~----r~l--f-----~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~L 379 (523)
T 4b4t_S 328 PE----LSF--F-----HQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQL 379 (523)
T ss_dssp CC----HHH--H-----TTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHH
T ss_pred CC----hHH--h-----hchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHH
Confidence 11 000 0 01111 234677777763 566778888888888877754433
No 367
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.94 E-value=15 Score=24.98 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=26.5
Q ss_pred ccccccccccccEE---ccCCCcccHHHHHHHcccCCCcccc
Q 012162 179 DCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLC 217 (469)
Q Consensus 179 ~C~ic~~~~~~p~~---~~cgh~~C~~Ci~~~~~~~~~CP~C 217 (469)
.|--|...+.+... ..|++.||.+|=.-.-+.-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 47777777755432 5799999999943222334579988
No 368
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=42.93 E-value=38 Score=28.65 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=53.1
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHh--cCC--C-------------CCccc-ccchhHHHHHHHhhhccCCCCCc
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRAN--NIK--P-------------GDPIV-LGNRSSAYIRISQFLKHRPPSAS 81 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al--~~~--p-------------~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 81 (469)
+.+....-++..+.+.++|.+|+...+..+ +++ | .+.+. +..+|...-+.|+.
T Consensus 60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r--------- 130 (242)
T 3kae_A 60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYR--------- 130 (242)
T ss_dssp CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCH---------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCH---------
Confidence 345566667888999999999999999998 333 2 22232 34456677777877
Q ss_pred ccCccCCCCCchhHHHHHHHHHHHhhccccchH
Q 012162 82 EYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 114 (469)
Q Consensus 82 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 114 (469)
++|+.++......+|-.+.
T Consensus 131 --------------~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 131 --------------EEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp --------------HHHHHHHHHHHHHCCCHHH
T ss_pred --------------HHhhhHhhhhcCCccccch
Confidence 9999999999888876543
No 369
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.47 E-value=35 Score=33.31 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhhcc---ccchHH
Q 012162 39 EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ---SNSMKS 115 (469)
Q Consensus 39 ~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~---p~~~~~ 115 (469)
++.+..+.+-...+..-..++..+|..|+..|++ ++|++.+.++...- ..-.+.
T Consensus 114 ~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~-----------------------~~A~~~~~~~~~~~~~~~~kid~ 170 (429)
T 4b4t_R 114 NEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDK-----------------------DNAEKTLGKSLSKAISTGAKIDV 170 (429)
T ss_dssp HHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCC-----------------------TTHHHHHHHHHHHHTCCCSHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhcCChHHHHHH
Confidence 3344444332223334556888999999999999 89999998887643 234567
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 116 HLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 116 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
++....++...+++..+...+.++-.+
T Consensus 171 ~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 171 MLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 788888889999999999999998654
No 370
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=42.38 E-value=15 Score=29.02 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=35.9
Q ss_pred cccccccccccccc-cEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYE-PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~-p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
+-+.|..|...+.. +....-|..||..|..+.+ +..|+.|+.++.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCC
Confidence 56789999987765 4567789999999987654 458999999875
No 371
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=39.18 E-value=1e+02 Score=29.02 Aligned_cols=44 Identities=7% Similarity=0.115 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHh
Q 012162 94 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 137 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 137 (469)
++.+|+.+..+.=...-.++..|..+|..|...++|.+|..+|-
T Consensus 117 fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 117 FVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 34666666555333345678999999999999999999999985
No 372
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.23 E-value=43 Score=26.08 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhc
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANN 50 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~ 50 (469)
....++..++++|...=..|+-+.|+.+|.+.|.
T Consensus 17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 4456688888888887778888888888877664
No 373
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=36.95 E-value=27 Score=28.39 Aligned_cols=45 Identities=20% Similarity=0.539 Sum_probs=29.7
Q ss_pred ccccccccccccccccEEccCCCcccHHHHHHHcc---------c-C-CCcccccc
Q 012162 175 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD---------R-G-NKCPLCRA 219 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~---------~-~-~~CP~Cr~ 219 (469)
..+..|.+|.+--.=----.|..+||..||..-+. . + -.||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34567998875332111138999999999986543 1 2 27999974
No 374
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=36.04 E-value=20 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=21.0
Q ss_pred ccccccccccccc---cc--EEccCCCcccHHHHH
Q 012162 176 DDFDCTLCLKLLY---EP--ITTPCGHSFCRSCLF 205 (469)
Q Consensus 176 ~~~~C~ic~~~~~---~p--~~~~cgh~~C~~Ci~ 205 (469)
..-.|.+|...+. ++ +...|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4568999998762 22 336788888888854
No 375
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.98 E-value=75 Score=24.72 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
.+|..+..+||++|-. |.--..+.-|.+++..+++++.+..+
T Consensus 20 ~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 20 KKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence 7888888899888762 44445566677888888888888664
No 376
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=35.96 E-value=15 Score=27.66 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccccCCCCCchhH
Q 012162 117 LLKANALILLERYDMARDAILSGLQVDPFSNPLQ 150 (469)
Q Consensus 117 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (469)
..+|..+...|+++.|+.+|-+|+.+.|+-..+.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4578999999999999999999999988755543
No 377
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.86 E-value=87 Score=25.99 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCC
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 55 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~ 55 (469)
...-+..|..+|+.|+|=+|=+.++.+....+..
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~ 65 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRG 65 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSS
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCC
Confidence 3455678999999999999999999999887654
No 378
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=34.17 E-value=1.2e+02 Score=24.75 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=29.2
Q ss_pred hhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 106 LNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 106 l~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
+.-.+-++..++.+|.+|.++|+..+|-+.+.+|-+
T Consensus 118 l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 118 LKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344455689999999999999999999999888765
No 379
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=39.77 E-value=8.8 Score=40.15 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=46.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhh
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 72 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 72 (469)
+.....+|..++.+|+|.-|....+.++..+|+|..+...+|.+|-++|.-
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~ 511 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQ 511 (668)
Confidence 566778899999999999999999999999999999999999999888854
No 380
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.48 E-value=4.7 Score=29.35 Aligned_cols=14 Identities=43% Similarity=1.054 Sum_probs=12.0
Q ss_pred cCCCcccHHHHHHH
Q 012162 194 PCGHSFCRSCLFQS 207 (469)
Q Consensus 194 ~cgh~~C~~Ci~~~ 207 (469)
.||+.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999997655
No 381
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=31.09 E-value=1.2e+02 Score=29.27 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHhc
Q 012162 22 VFDLVQKGNRAFRESNFEEAISNYSRANN 50 (469)
Q Consensus 22 ~~~~~~~g~~~~~~~~~~~A~~~y~~al~ 50 (469)
-.+....|..|.+.|++++-...+.....
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667889999999999888777765543
No 382
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=30.92 E-value=54 Score=28.35 Aligned_cols=39 Identities=21% Similarity=0.078 Sum_probs=33.7
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcCCCCCc
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP 56 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~~p~~~ 56 (469)
....+.-++-.|..++.+++|.+|-.++.+|++..|.+.
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 445577778899999999999999999999999988654
No 383
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=30.41 E-value=1.1e+02 Score=30.24 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=58.2
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccC----ccCCCCCchh-HH-HHHHHHHHHhhc-cc--------cchHHHHHHH
Q 012162 56 PIVLGNRSSAYIRISQFLKHRPPSASEYR----PLNGLDPTTH-AE-LALKDAEKLLNL-QS--------NSMKSHLLKA 120 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~-~A~~~~~~al~l-~p--------~~~~~~~~~g 120 (469)
..+++.||.+|+.+-+..+.-+--..... .-..+++... .+ ..+.+++.|+.. -| +...|+..+|
T Consensus 116 aEa~flRA~~Yf~L~~~~G~VPl~~~~~~~~~~~~~~r~~~~evy~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~alla 195 (482)
T 3otn_A 116 AEVKFMRALYYFYLVRIFGDVPKITTVQSELGELQVSRAPVKEIYDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLA 195 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHSSBCCCCSCGGGCSCSSCCCBCHHHHHHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcceeCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHH
Confidence 47788899999998766443333322211 1123333333 35 577899999886 33 3355888899
Q ss_pred HHHHHHh---------HHHHHHHHHhcccc
Q 012162 121 NALILLE---------RYDMARDAILSGLQ 141 (469)
Q Consensus 121 ~~~~~~~---------~~~~A~~~~~~al~ 141 (469)
.+|...+ +|++|.++.++++.
T Consensus 196 rvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 196 DVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp HHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 9999888 99999999888875
No 384
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=29.60 E-value=1.2e+02 Score=29.88 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=56.6
Q ss_pred cccccchhHHHHHHHhhhcc-----------CCCCCccc--CccCCCCCc-hhHHHHHHHHHHHhhcccc--------ch
Q 012162 56 PIVLGNRSSAYIRISQFLKH-----------RPPSASEY--RPLNGLDPT-THAELALKDAEKLLNLQSN--------SM 113 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~-~~~~~A~~~~~~al~l~p~--------~~ 113 (469)
..+++.||.+|+.+-+..+. -+--.+.. .....+++. +..+..+.+++.|+.+-|. ..
T Consensus 117 gEA~flRA~~yf~L~~~fG~py~~~~~~~~~vPl~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~L~~~~~~gr~tk~ 196 (461)
T 3kez_A 117 GQALAIRGMALFDLTRIFGYPYLKDNGASLGVPIVKELSTIDSKPARNTVAECYTEIISDLKNSTELLSGDFNKGKVNRW 196 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHTTCSBCCCCCCSCCCTTCCCCCCBHHHHHHHHHHHHHHHHHHSCCSCCTTSCCHH
T ss_pred HHHHHHHHHHHHHHHHHhCCccccccCCcCceeEEeccCCcCCCCCCCCHHHHHHHHHHHHHHHHHhCccccCCCeeeHH
Confidence 37788899999998776551 00000000 011123332 2346778888888876443 34
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 114 KSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
.|+..+|.+|...|+|++|.++.++++.
T Consensus 197 aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 197 AAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5888899999999999999999988875
No 385
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.30 E-value=90 Score=34.02 Aligned_cols=95 Identities=15% Similarity=0.050 Sum_probs=61.6
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh-
Q 012162 29 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN- 107 (469)
Q Consensus 29 g~~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~- 107 (469)
...+...|.++-|. +.+..-|.++..-+-+|.+|+..|++ ++|...|++|-.
T Consensus 817 ~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~-----------------------~~A~~~F~kAA~g 869 (950)
T 4gq2_M 817 VEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEA-----------------------VKAVRCFKTTSLV 869 (950)
T ss_dssp HHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHTCCCT
T ss_pred HHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHhhh
Confidence 34555566665443 23455566666667788888888888 777777766531
Q ss_pred c----------------------cccchHHHHHHHHHHHHHhHHHHHHHHHhccccC-CCCCchhH
Q 012162 108 L----------------------QSNSMKSHLLKANALILLERYDMARDAILSGLQV-DPFSNPLQ 150 (469)
Q Consensus 108 l----------------------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~ 150 (469)
+ .......|......+...+-|+-+++..+.|++. .++++...
T Consensus 870 l~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~ 935 (950)
T 4gq2_M 870 LYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLS 935 (950)
T ss_dssp TCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHH
T ss_pred cccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccch
Confidence 1 1112235566778888999999999999999964 44555443
No 386
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.14 E-value=78 Score=26.48 Aligned_cols=8 Identities=50% Similarity=1.244 Sum_probs=6.7
Q ss_pred Cccccccc
Q 012162 213 KCPLCRAV 220 (469)
Q Consensus 213 ~CP~Cr~~ 220 (469)
.||+|..+
T Consensus 155 ~CP~Cg~~ 162 (170)
T 3pwf_A 155 YCPVCGAP 162 (170)
T ss_dssp BCTTTCCB
T ss_pred CCCCCCCC
Confidence 79999865
No 387
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=29.12 E-value=1.2e+02 Score=29.89 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=56.1
Q ss_pred cccccchhHHHHHHHhhhccC----------CCCCccc---CccCCCCCc-hhHHHHHHHHHHHhhccc-----------
Q 012162 56 PIVLGNRSSAYIRISQFLKHR----------PPSASEY---RPLNGLDPT-THAELALKDAEKLLNLQS----------- 110 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~---~~~~~~~~~-~~~~~A~~~~~~al~l~p----------- 110 (469)
..+++.||.+|+.+-+..+.. |--.... ..-..+++. +..+..+.+++.|+.+-|
T Consensus 107 gEA~flRA~~yf~L~~~fG~~Y~~~~~~~~VPl~~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~L~~~~~~~~~~~g 186 (460)
T 3snx_A 107 GQALALRAFCYLHLVQHYQFTYLKDKDAPCVPIYTEPTTSGTKPKGKSTVAQVYQQIFDDLNLAQDYLTNYVRKGDGQKF 186 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTTCTTSBCCCCCCSCCCTTCCCCCCCBHHHHHHHHHHHHHHHHHHTTTCCCCSGGGTT
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCCCCCceEEeccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcccccCCccccCc
Confidence 477888999999997764411 1100000 001122222 224667778888776432
Q ss_pred --cchHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 111 --NSMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 111 --~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
+...|+..+|.+|...|+|++|.++.++++..
T Consensus 187 r~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 187 KPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23457888999999999999999999999864
No 388
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=28.84 E-value=1e+02 Score=25.14 Aligned_cols=64 Identities=9% Similarity=-0.131 Sum_probs=46.6
Q ss_pred HHHHHhHH-HHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHH
Q 012162 23 FDLVQKGN-RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 101 (469)
Q Consensus 23 ~~~~~~g~-~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 101 (469)
..+.+.|. .+..+|.-++--+.+...+.-.+-+|.++..+|.+|-++|+. .+|-+.
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~-----------------------r~a~eL 147 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDE-----------------------RDATTL 147 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcch-----------------------hhHHHH
Confidence 34555554 445667777777777776777777899999999999999998 888888
Q ss_pred HHHHhhcc
Q 012162 102 AEKLLNLQ 109 (469)
Q Consensus 102 ~~~al~l~ 109 (469)
..+|-+..
T Consensus 148 l~~AC~kG 155 (172)
T 1wy6_A 148 LIEACKKG 155 (172)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 77776543
No 389
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=28.77 E-value=58 Score=23.60 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 94 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
....|+..+.+|++.|-. |..-....-|.+|++.|..++...|+..
T Consensus 9 ~l~~A~~l~~~Av~~D~~--------g~y~eAl~~Y~~aie~l~~a~k~e~~~~ 54 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTA--------TQYEEAYTAYYNGLDYLMLALKYEKNPK 54 (85)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 347888888888765422 1112233445566666666666565433
No 390
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=28.54 E-value=38 Score=28.22 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=34.3
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.-|.|..|...+.......-|..||..|..+.+ +..|..|+.++.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 567899998877654335678899999987765 457999998764
No 391
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=28.49 E-value=41 Score=24.86 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=20.8
Q ss_pred hhhhHHHHHHhHHHHHHh---ccHHHHHHHHHHHhc
Q 012162 18 RYTHVFDLVQKGNRAFRE---SNFEEAISNYSRANN 50 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~---~~~~~A~~~y~~al~ 50 (469)
...++..+.++|...=.. |+-++|+.+|.+.+.
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 344566777777666666 666666666666553
No 392
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=27.62 E-value=23 Score=37.48 Aligned_cols=50 Identities=30% Similarity=0.506 Sum_probs=36.9
Q ss_pred CCccccccccccccccccE----------EccCCC--------------------cccHHHHHHHcccC--------CCc
Q 012162 173 ERTDDFDCTLCLKLLYEPI----------TTPCGH--------------------SFCRSCLFQSMDRG--------NKC 214 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~----------~~~cgh--------------------~~C~~Ci~~~~~~~--------~~C 214 (469)
...+...|+-|+.-+.+|- .+.||. .+|..|..++-+.. ..|
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 4456679999998887762 367884 46999999986532 359
Q ss_pred cccccccc
Q 012162 215 PLCRAVLF 222 (469)
Q Consensus 215 P~Cr~~~~ 222 (469)
|.|+-.+.
T Consensus 187 ~~CGP~l~ 194 (761)
T 3vth_A 187 FDCGPSLS 194 (761)
T ss_dssp TTTSCCEE
T ss_pred CccCCeeE
Confidence 99987663
No 393
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=27.47 E-value=94 Score=29.50 Aligned_cols=45 Identities=9% Similarity=-0.030 Sum_probs=32.5
Q ss_pred HHHHHHHHhh-----ccccchHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 98 ALKDAEKLLN-----LQSNSMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 98 A~~~~~~al~-----l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
++..+.+|+. .+..+...|..+|..+++.++|.+|+..+-.|-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 4444444444 23445667888999999999999999999887544
No 394
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=27.26 E-value=15 Score=21.87 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=7.3
Q ss_pred ccccccccccccc
Q 012162 178 FDCTLCLKLLYEP 190 (469)
Q Consensus 178 ~~C~ic~~~~~~p 190 (469)
|.||+|...+.++
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 5666666555444
No 395
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.95 E-value=71 Score=27.91 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=20.3
Q ss_pred ccccccccccccccE----EccCCCcccHHHHH
Q 012162 177 DFDCTLCLKLLYEPI----TTPCGHSFCRSCLF 205 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~----~~~cgh~~C~~Ci~ 205 (469)
...|..|...|.--. .-.||+.||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 358999987765221 25799999998854
No 396
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=26.66 E-value=65 Score=23.47 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=23.6
Q ss_pred CCccccccccccccccccEEc---cCCCcccHHHHHHH
Q 012162 173 ERTDDFDCTLCLKLLYEPITT---PCGHSFCRSCLFQS 207 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~~~---~cgh~~C~~Ci~~~ 207 (469)
.+..+..|.+|...- .-..+ -|+-.|...|+.+.
T Consensus 11 ~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 344666899997433 22233 58899999999885
No 397
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=26.62 E-value=42 Score=22.68 Aligned_cols=44 Identities=23% Similarity=0.561 Sum_probs=30.1
Q ss_pred CccccccccccccccccEE--ccCCCcccHHHHHHHccc----CCCcccccc
Q 012162 174 RTDDFDCTLCLKLLYEPIT--TPCGHSFCRSCLFQSMDR----GNKCPLCRA 219 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~--~~cgh~~C~~Ci~~~~~~----~~~CP~Cr~ 219 (469)
......|.+|... .-+. -.|...|...|+...+.. .-.||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3455679999863 2233 378899999999875432 237999975
No 398
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.36 E-value=22 Score=26.66 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=33.5
Q ss_pred ccccccccccccccc-EEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p-~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.-|.|..|...+... ....-|..||..|..+.+ +..|..|.+++.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED--SPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC--CCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc--CCccccCCCccc
Confidence 457888898877654 456778899999975433 458999998874
No 399
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.13 E-value=35 Score=28.17 Aligned_cols=44 Identities=23% Similarity=0.575 Sum_probs=28.6
Q ss_pred ccccccccccccc---cc--EEccCCCcccHHHHHHHccc--CCCccccccc
Q 012162 176 DDFDCTLCLKLLY---EP--ITTPCGHSFCRSCLFQSMDR--GNKCPLCRAV 220 (469)
Q Consensus 176 ~~~~C~ic~~~~~---~p--~~~~cgh~~C~~Ci~~~~~~--~~~CP~Cr~~ 220 (469)
..-.|.+|...|. ++ +...|.|.+|..|-. +... .-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 5668999998642 22 336899999999962 2221 1247777653
No 400
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=26.13 E-value=25 Score=37.42 Aligned_cols=50 Identities=30% Similarity=0.615 Sum_probs=36.2
Q ss_pred CCccccccccccccccccE----------EccCCCc--------------------ccHHHHHHHcccC--------CCc
Q 012162 173 ERTDDFDCTLCLKLLYEPI----------TTPCGHS--------------------FCRSCLFQSMDRG--------NKC 214 (469)
Q Consensus 173 ~~~~~~~C~ic~~~~~~p~----------~~~cgh~--------------------~C~~Ci~~~~~~~--------~~C 214 (469)
...+...|+-|+.-+.+|- .+.||.. +|..|-.++-+.. ..|
T Consensus 102 i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC 181 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCC
Confidence 3456678999998877762 3678754 4999999886532 369
Q ss_pred cccccccc
Q 012162 215 PLCRAVLF 222 (469)
Q Consensus 215 P~Cr~~~~ 222 (469)
|.|+-.+.
T Consensus 182 ~~CGP~l~ 189 (772)
T 4g9i_A 182 PVCGPSYR 189 (772)
T ss_dssp TTTSCCEE
T ss_pred ccCCceEE
Confidence 99997663
No 401
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.85 E-value=79 Score=27.80 Aligned_cols=30 Identities=23% Similarity=0.549 Sum_probs=21.4
Q ss_pred ccccccccccccccE----EccCCCcccHHHHHH
Q 012162 177 DFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQ 206 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~----~~~cgh~~C~~Ci~~ 206 (469)
.-.|..|...|.--. .-.||+.||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 348999987665321 257999999999654
No 402
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.79 E-value=1.1e+02 Score=30.25 Aligned_cols=86 Identities=14% Similarity=0.034 Sum_probs=57.1
Q ss_pred cccccchhHHHHHHHhhhccCCCCCccc----CccCCCCCc-hhHHHHHHHHHHHhhcccc-------------------
Q 012162 56 PIVLGNRSSAYIRISQFLKHRPPSASEY----RPLNGLDPT-THAELALKDAEKLLNLQSN------------------- 111 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~A~~~~~~al~l~p~------------------- 111 (469)
..+++.||.+|+.+-+..+.-|-..... .....+++. +..+..+.+++.|+.+-|.
T Consensus 112 gEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~ 191 (478)
T 3hdx_A 112 AQVRALRAFAYFYMVRIWGDVPLVTYSYDNGTFPSMPRTDAQTVLSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQG 191 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHSSBCCCCSCCCTTCCCCCCCBCHHHHHHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTT
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeeccCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhCcccccCCcccccccccccccc
Confidence 4788889999999876544333322221 011223332 3346677888888775332
Q ss_pred ----chHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 112 ----SMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 112 ----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
...|+..+|.+|...|+|++|.++.++++.
T Consensus 192 ~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 225 (478)
T 3hdx_A 192 KLFNKLSAYSVLAHICAWQGNYAEAETYSAFIID 225 (478)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 234778889999999999999999998875
No 403
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.04 E-value=1.1e+02 Score=29.71 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
.+|+..+++.- +..+...|..+|..++..++|.+|+..+-.|-..
T Consensus 303 ~~AI~sa~~~Y--~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 303 HKGIASAKTYY--RDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHS--TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 34444333332 3455677888999999999999999998877543
No 404
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.87 E-value=33 Score=29.03 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=29.6
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHcccCCCccccccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 222 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~~ 222 (469)
.-|.|..|...+.......-|..||..|..+.+ +..|..|+.++.
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT--SCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc--ccccccCCCccC
Confidence 446777777666543233567778888876554 357888888764
No 405
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=24.70 E-value=27 Score=36.22 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=18.7
Q ss_pred CcccHHHHHHHcccC--------CCcccccccc
Q 012162 197 HSFCRSCLFQSMDRG--------NKCPLCRAVL 221 (469)
Q Consensus 197 h~~C~~Ci~~~~~~~--------~~CP~Cr~~~ 221 (469)
..+|..|..++-+.. ..||.|+-.+
T Consensus 67 F~mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 67 FPLCPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp SCCCHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred CCCChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 456999999886532 3699998766
No 406
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.60 E-value=44 Score=32.09 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=30.5
Q ss_pred CccccccccccccccccEE-c--cCCCcccHHHHHHHcccC----------CCcccccc
Q 012162 174 RTDDFDCTLCLKLLYEPIT-T--PCGHSFCRSCLFQSMDRG----------NKCPLCRA 219 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~-~--~cgh~~C~~Ci~~~~~~~----------~~CP~Cr~ 219 (469)
...+..|.+|.+-- +-+. - .|...||..||...+..+ -.|=.|.-
T Consensus 90 DG~~~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34566788887643 2222 2 799999999999876532 25888874
No 407
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=24.47 E-value=23 Score=28.07 Aligned_cols=31 Identities=26% Similarity=0.642 Sum_probs=22.0
Q ss_pred cccccccccccccccE----EccCCCcccHHHHHH
Q 012162 176 DDFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQ 206 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~----~~~cgh~~C~~Ci~~ 206 (469)
....|.+|...|.--. --.||+.||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3447999988776331 257999999999643
No 408
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.47 E-value=67 Score=35.03 Aligned_cols=40 Identities=13% Similarity=-0.018 Sum_probs=33.6
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012162 102 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 141 (469)
Q Consensus 102 ~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 141 (469)
+...+..-|.++..-|.+|.+|...|++++|...|++|-.
T Consensus 829 a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3445566677888889999999999999999999999863
No 409
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=24.30 E-value=1.6e+02 Score=28.93 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred cccccchhHHHHHHHhhhc-----------cCCCCCccc--CccCCCCCchh-HHHHHHHHHHHhhccc--------cch
Q 012162 56 PIVLGNRSSAYIRISQFLK-----------HRPPSASEY--RPLNGLDPTTH-AELALKDAEKLLNLQS--------NSM 113 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~-~~~A~~~~~~al~l~p--------~~~ 113 (469)
..+++.||.+|+.+-+..+ .-|--.+.. .....+++... .+..+.+++.|+.+-| +..
T Consensus 123 gEa~flRA~~yf~L~~~fG~~y~~~~~~~~~vPl~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~L~~~~~~gr~tk~ 202 (477)
T 3mcx_A 123 SEALVMRGLSLFNLTRLFGMPYTNDKGASLGVPIETSPSDPTHKPSRSTVAQCYEQVVSDMSNALSGLRQETSNGYINYW 202 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCGGGTTTCSBCCCCCCSSCCTTCCCCCCBHHHHHHHHHHHHHHHGGGSCSSCCTTSCCHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCccccccCCceeeecccCcccCCCCCCHHHHHHHHHHHHHHHHHhCcccccCCcCcHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccc
Q 012162 114 KSHLLKANALILLERYDMARDAILSGL 140 (469)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~A~~~~~~al 140 (469)
.|+..+|.+|...|+|++|.++.++++
T Consensus 203 aa~allarvyL~~~~~~~A~~~a~~vi 229 (477)
T 3mcx_A 203 AAQALLSRVYLNMGEYQKAYDAATDVI 229 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
No 410
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.96 E-value=90 Score=23.82 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=25.7
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhc
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANN 50 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~ 50 (469)
.++..+.-.|-.+.+.|||++|-....+|-+
T Consensus 18 G~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 18 GDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777788889999999999999988754
No 411
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.89 E-value=31 Score=24.87 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 116 HLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 116 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
...+|.=|..+|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456777788899999999999988763
No 412
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=23.84 E-value=55 Score=28.28 Aligned_cols=35 Identities=6% Similarity=0.020 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCc
Q 012162 113 MKSHLLKANALILLERYDMARDAILSGLQVDPFSN 147 (469)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (469)
...+|.+|..+...++|.+|..++..|+...|.+.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45678899999999999999999999999988653
No 413
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=23.74 E-value=28 Score=23.59 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=25.2
Q ss_pred cchhHHHHHhcCCCChhHhhhhccCCCHHHH
Q 012162 421 PERFSFWLATLSDRRPSERLELLRIRDTRER 451 (469)
Q Consensus 421 p~~l~~~ia~~l~l~~~~kq~lLe~~~~~eR 451 (469)
-..++-.|++.|.+++++.|.+|+..+.+.+
T Consensus 23 ~~~m~kaI~avL~Fs~~e~q~il~~e~~r~~ 53 (60)
T 1upt_B 23 TKTMAKVITTVLKFPDDQTQKILEREDARLM 53 (60)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccc
Confidence 3458889999999999999999986655544
No 414
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=23.43 E-value=1.1e+02 Score=21.67 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=29.2
Q ss_pred eEEeeeeccC-CeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 012162 343 FRILRSWDQD-GYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRR 393 (469)
Q Consensus 343 ~~i~~~~~~~-~~~~a~ve~~~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 393 (469)
|.|.-.++.+ |+|+|.+.-++-.-- +...++++.+.+++.+..++..
T Consensus 4 f~V~~~~Deeagv~vA~s~di~Glvt----ea~Tleel~~~i~~~i~~lLe~ 51 (73)
T 1wv8_A 4 LKVQALWDGEAGVWVAESDDVPGLAT----EAATLEELLAKLAVMVPELLEE 51 (73)
T ss_dssp EEEEEEEETTTTEEEEECSSSTTCCC----EESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCEEEEECCCCCceee----ecCCHHHHHHHHHHHHHHHHHh
Confidence 5565556655 999998765542111 1235677777777777766653
No 415
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=23.41 E-value=94 Score=23.61 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=25.8
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhc
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANN 50 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~ 50 (469)
.++..+.-.|-.+.+.|+|++|.....+|-+
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777788889999999999999988754
No 416
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.31 E-value=1.3e+02 Score=23.37 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCCCch
Q 012162 94 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 148 (469)
Q Consensus 94 ~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (469)
+...|+..+.+|++.|-. |..-..+.-|.+|++.|..+++..+.+..
T Consensus 14 ~l~kAi~lv~~Ave~D~a--------g~y~eAl~lY~~Aie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKA--------GNYEEALQLYQHAVQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 458888888888765421 22223344566777777777777755554
No 417
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=23.14 E-value=17 Score=32.76 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 18 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
....|..+..+|..+=+.|+|++|+.+|..|+++
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp ----------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455778889999999999999999999999875
No 418
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=23.06 E-value=12 Score=27.62 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=19.0
Q ss_pred cccccccccc-----ccEEc-cCCCcccHHHHHHH
Q 012162 179 DCTLCLKLLY-----EPITT-PCGHSFCRSCLFQS 207 (469)
Q Consensus 179 ~C~ic~~~~~-----~p~~~-~cgh~~C~~Ci~~~ 207 (469)
-||-|...+. .+++= .||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3776665442 12444 49999999997665
No 419
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=23.02 E-value=67 Score=25.56 Aligned_cols=44 Identities=20% Similarity=0.559 Sum_probs=28.9
Q ss_pred cccccccccccccccEEccCCCcccHHHHHHHcc----------cC-CCcccccc
Q 012162 176 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD----------RG-NKCPLCRA 219 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p~~~~cgh~~C~~Ci~~~~~----------~~-~~CP~Cr~ 219 (469)
.+..|.+|.+--.-.---.|-..||..||...+. .+ -.|+.|+-
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4456999985433222247999999999986421 12 27999963
No 420
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.84 E-value=77 Score=32.93 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHH
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERY 129 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~ 129 (469)
.-|...++.++..+|++..+...+|.+|.++|.-
T Consensus 466 ~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 466 RWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999888754
No 421
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=22.82 E-value=50 Score=23.03 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=32.2
Q ss_pred cccccccccccccc-cEEccCCCcccH-HHHHHHcccCCCcccccccc
Q 012162 176 DDFDCTLCLKLLYE-PITTPCGHSFCR-SCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 176 ~~~~C~ic~~~~~~-p~~~~cgh~~C~-~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
.-|.|..|...+.. +....-|..||. .|..+.+ +..|..|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 45788999887765 566678889999 6987654 34688887543
No 422
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=22.60 E-value=91 Score=31.02 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=56.5
Q ss_pred cccccchhHHHHHHHhhhccCCCCC-----cccC----------ccCCCCC-chhHHHHHHHHHHHhhcccc--------
Q 012162 56 PIVLGNRSSAYIRISQFLKHRPPSA-----SEYR----------PLNGLDP-TTHAELALKDAEKLLNLQSN-------- 111 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~----------~~~~~~~-~~~~~~A~~~~~~al~l~p~-------- 111 (469)
..+++.||.+|+.+-+..+..-..+ ..+. .-..+++ .+..+..+.+++.|+.+-|.
T Consensus 119 gEA~flRA~~Yf~L~~~fG~~y~~~~~~~~VPl~~~~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~Lp~~~~~~~~g 198 (495)
T 3lew_A 119 GQALALRGFLYLHLASCYSFAIDKDPDAVCAPIYTQSTDETIAAEGKPASSVSEVYAQSINDLEEALELIPETYVRDAKH 198 (495)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCTTTCTTSEEECCCCSCC-CHHHHSCCCCEEHHHHHHHHHHHHHHHHHHSCTTCCCSSTT
T ss_pred HHHHHHHHHHHHHHHHHhCcccccccCCCCceEEecCCCccccccCCCCCCHHHHHHHHHHHHHHHHHhcccccCcccCC
Confidence 4788889999999877644111110 0000 0011111 22346677888888875543
Q ss_pred ---chHHHHHHHHHHHHHhHHHHHHHHHhccccC
Q 012162 112 ---SMKSHLLKANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 112 ---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
...|+..+|.+|...|+|++|.++.++++..
T Consensus 199 r~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 199 KIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 2457888999999999999999999998754
No 423
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.52 E-value=25 Score=29.29 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.5
Q ss_pred CCccccccccc
Q 012162 212 NKCPLCRAVLF 222 (469)
Q Consensus 212 ~~CP~Cr~~~~ 222 (469)
..||.|+.++.
T Consensus 149 ~~Cp~CG~~~~ 159 (165)
T 2lcq_A 149 GVCPDCGSKVK 159 (165)
T ss_dssp GBCTTTCCBEE
T ss_pred CcCCCCCCcce
Confidence 47999998763
No 424
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.41 E-value=78 Score=21.63 Aligned_cols=31 Identities=19% Similarity=0.561 Sum_probs=15.6
Q ss_pred cccccccccccc-cEEccCCCcccHHHHHHHc
Q 012162 178 FDCTLCLKLLYE-PITTPCGHSFCRSCLFQSM 208 (469)
Q Consensus 178 ~~C~ic~~~~~~-p~~~~cgh~~C~~Ci~~~~ 208 (469)
|.|..|...+.. .....-|..||..|..+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 455555554432 2334455556666655444
No 425
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.97 E-value=9.1 Score=26.11 Aligned_cols=33 Identities=24% Similarity=0.584 Sum_probs=19.5
Q ss_pred cccccccccccc-----EE-cc--CCCcccHHHHHHHcccC
Q 012162 179 DCTLCLKLLYEP-----IT-TP--CGHSFCRSCLFQSMDRG 211 (469)
Q Consensus 179 ~C~ic~~~~~~p-----~~-~~--cgh~~C~~Ci~~~~~~~ 211 (469)
.||-|...+... ++ .. |++.||+.|...|...+
T Consensus 8 ~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 8 ECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 566666544332 12 22 78888888877665543
No 426
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=21.86 E-value=85 Score=25.54 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=31.5
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC----CCCCccc
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI----KPGDPIV 58 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~----~p~~~~~ 58 (469)
...+..++..|..+...||++.|...|-++..+ -|.++++
T Consensus 37 lrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy 80 (146)
T 2xze_A 37 FRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccc
Confidence 456788899999999999999999999886443 4555544
No 427
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.82 E-value=2.3e+02 Score=23.50 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHhccccCCCC
Q 012162 96 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 145 (469)
Q Consensus 96 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 145 (469)
..|...+..+...+|......-.+..++..+.+....+..|...+..||.
T Consensus 73 ~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 73 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56777777888889988888889999999999999999999999988884
No 428
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.70 E-value=37 Score=31.62 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=32.5
Q ss_pred ccccccccccccccccEEc----cCC--CcccHHHHHHHcccCCCccccccc
Q 012162 175 TDDFDCTLCLKLLYEPITT----PCG--HSFCRSCLFQSMDRGNKCPLCRAV 220 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~p~~~----~cg--h~~C~~Ci~~~~~~~~~CP~Cr~~ 220 (469)
...-.||+|...-.--+.. .-| +-+|..|-..|--....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4566899999654433332 244 568999998887666789999864
No 429
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=21.67 E-value=1.2e+02 Score=19.94 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHhHHHHHHhccHHHHHHHHHHHhcC
Q 012162 17 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 51 (469)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 51 (469)
+...++..+..-|..+++-.|..-|++.+++|+++
T Consensus 15 ~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~l 49 (53)
T 2rkl_A 15 SKIEQIQKLAKYAISALNYEDLPTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 45667888888888888999999999999999874
No 430
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=21.56 E-value=1.1e+02 Score=23.59 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=26.1
Q ss_pred hhhHHHHHHhHHHHHHhccHHHHHHHHHHHhc
Q 012162 19 YTHVFDLVQKGNRAFRESNFEEAISNYSRANN 50 (469)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~ 50 (469)
..++..+.-.|-.+.+.|+|++|-..+.+|-+
T Consensus 19 aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 19 SGNARSFAMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777788888899999999999988854
No 431
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.17 E-value=56 Score=27.01 Aligned_cols=45 Identities=24% Similarity=0.529 Sum_probs=29.5
Q ss_pred CccccccccccccccccEE---ccCCCcccHHHHHHHcccC----------CCcccccc
Q 012162 174 RTDDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRG----------NKCPLCRA 219 (469)
Q Consensus 174 ~~~~~~C~ic~~~~~~p~~---~~cgh~~C~~Ci~~~~~~~----------~~CP~Cr~ 219 (469)
...+..|.+|.+-- +-+. .+|...||..||...+..+ -.|-.|.-
T Consensus 76 DG~~~yC~wC~~Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGGR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCCS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCCC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 34566788887532 2222 2688999999998876542 15888863
No 432
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=21.05 E-value=69 Score=19.51 Aligned_cols=30 Identities=3% Similarity=-0.017 Sum_probs=24.3
Q ss_pred CChhHhhhhccCCCHHHHHHHHHHHHHhhh
Q 012162 434 RRPSERLELLRIRDTRERIRRGLIFLRAEE 463 (469)
Q Consensus 434 l~~~~kq~lLe~~~~~eRl~~l~~~l~~~~ 463 (469)
++.++|+.|+...+...=+.+-...|++-+
T Consensus 1 LseEEk~~I~~S~~F~~F~~rsskviERAL 30 (38)
T 3l9k_W 1 LSEEQKQMIILSENFQRFVVRAGRVIERAL 30 (38)
T ss_dssp CCHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 578999999999998888877777776644
No 433
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=20.99 E-value=67 Score=22.55 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=32.2
Q ss_pred ccccccccccccccc-cEE--ccCCCcccHHHHHHHcc----cCCCccccccccc
Q 012162 175 TDDFDCTLCLKLLYE-PIT--TPCGHSFCRSCLFQSMD----RGNKCPLCRAVLF 222 (469)
Q Consensus 175 ~~~~~C~ic~~~~~~-p~~--~~cgh~~C~~Ci~~~~~----~~~~CP~Cr~~~~ 222 (469)
.+...|.+|...... ..+ -.|..-|...|+..... ....||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 455679999876543 233 26888899999865433 2347999987653
No 434
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=20.94 E-value=1.6e+02 Score=29.30 Aligned_cols=87 Identities=11% Similarity=-0.017 Sum_probs=59.1
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccC----ccCCCCCc-hhHHHHHHHHHHHhhcccc-----------chHHHHHH
Q 012162 56 PIVLGNRSSAYIRISQFLKHRPPSASEYR----PLNGLDPT-THAELALKDAEKLLNLQSN-----------SMKSHLLK 119 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~A~~~~~~al~l~p~-----------~~~~~~~~ 119 (469)
..+++.||.+|+.+-+..+.-+--..... .-..+++. +..+..+.+++.|+..-|. ...|+..+
T Consensus 109 aea~flRA~~yf~L~~~~G~VP~~~~~~~~~~~~~~~r~~~~ev~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~all 188 (517)
T 3qnk_A 109 GEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSREKGRATKGAAYALK 188 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCSSCCCTTSCCCCCCCCHHHHHHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCceeeCCcCCccccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHH
Confidence 47788899999998766443333222111 01233333 3356777888888875543 23478889
Q ss_pred HHHHHHHhHHHHHHHHHhccccC
Q 012162 120 ANALILLERYDMARDAILSGLQV 142 (469)
Q Consensus 120 g~~~~~~~~~~~A~~~~~~al~~ 142 (469)
|.+|...++|++|.++.++++..
T Consensus 189 arv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 189 SRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998864
No 435
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.92 E-value=1.1e+02 Score=26.45 Aligned_cols=9 Identities=44% Similarity=1.180 Sum_probs=7.2
Q ss_pred CCccccccc
Q 012162 212 NKCPLCRAV 220 (469)
Q Consensus 212 ~~CP~Cr~~ 220 (469)
..||.|+.+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 479999865
No 436
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=20.89 E-value=19 Score=21.01 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=12.4
Q ss_pred ccCCCcccHHHHHHHc
Q 012162 193 TPCGHSFCRSCLFQSM 208 (469)
Q Consensus 193 ~~cgh~~C~~Ci~~~~ 208 (469)
.+|.|+.|..|-...+
T Consensus 10 ascehtmcgycqgply 25 (40)
T 1erd_A 10 ASCEHTMCGYCQGPLY 25 (40)
T ss_dssp HHTCGGGGGGSCHHHH
T ss_pred HhccccccccccCCee
Confidence 4799999999965543
No 437
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=20.76 E-value=1.1e+02 Score=23.93 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=24.8
Q ss_pred hhHHHHHHhHHHHHHhccHHHHHHHHHHHhc
Q 012162 20 THVFDLVQKGNRAFRESNFEEAISNYSRANN 50 (469)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~~A~~~y~~al~ 50 (469)
.++..+.-.|-.+.+.|||++|.+.+.+|-+
T Consensus 35 G~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 35 GNARSIVHEAFDAMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3466677778888899999999999988754
No 438
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=20.70 E-value=91 Score=32.11 Aligned_cols=54 Identities=7% Similarity=-0.120 Sum_probs=43.9
Q ss_pred HHHHhccHHHHHHHHHHHhcCCCCCcccccchhHHHHHHHhhhccCCCCCcccCccCCCCCchhHHHHHHHHHHHhh
Q 012162 31 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 107 (469)
Q Consensus 31 ~~~~~~~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 107 (469)
.++..||+..|..+|.+.-......+...+.+|.++..+|+- .+|...+.++.+
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~-----------------------~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE-----------------------AEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHhc
Confidence 456779999999999886654445677789999999999988 888888888875
No 439
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.38 E-value=13 Score=29.31 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=28.6
Q ss_pred ccccccccccccccc----EEccCCCcccHHHHHHHcccCCCcccccccc
Q 012162 176 DDFDCTLCLKLLYEP----ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 221 (469)
Q Consensus 176 ~~~~C~ic~~~~~~p----~~~~cgh~~C~~Ci~~~~~~~~~CP~Cr~~~ 221 (469)
....|..|...|.-. ---.||..||..|..........|-.|-..+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 344788898876533 2268999999999765544444587786543
No 440
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=20.26 E-value=1.9e+02 Score=28.49 Aligned_cols=86 Identities=12% Similarity=-0.035 Sum_probs=57.2
Q ss_pred cccccchhHHHHHHHhhhccCCCCCccc---C-ccCCCCC-chhHHHHHHHHHHHhhcccc--------chHHHHHHHHH
Q 012162 56 PIVLGNRSSAYIRISQFLKHRPPSASEY---R-PLNGLDP-TTHAELALKDAEKLLNLQSN--------SMKSHLLKANA 122 (469)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~-~~~~~~A~~~~~~al~l~p~--------~~~~~~~~g~~ 122 (469)
..+++.||.+|+.+-+..+.-|-..... . .-..+++ .+..+..+++++.|+.+-|. ...|+..+|.+
T Consensus 110 aEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarv 189 (481)
T 3jq1_A 110 GECLFIRGFYLFQLAKEFKDAPLRLTASQSPSTFPLAKSSQADIWAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKI 189 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHSSEECCCCCCSSCCCSCCCEECHHHHHHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeeccCCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Confidence 4788889999999876544322211110 0 0112222 23356778888888876542 34578889999
Q ss_pred HHHHhHHHHHHHHHhcccc
Q 012162 123 LILLERYDMARDAILSGLQ 141 (469)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~ 141 (469)
|...++|++|+++.++++.
T Consensus 190 yL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 190 YVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHTTCHHHHHHHHGGGGS
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 9999999999999998875
No 441
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.07 E-value=36 Score=24.60 Aligned_cols=30 Identities=30% Similarity=0.671 Sum_probs=21.6
Q ss_pred ccccccccccccccE----EccCCCcccHHHHHH
Q 012162 177 DFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQ 206 (469)
Q Consensus 177 ~~~C~ic~~~~~~p~----~~~cgh~~C~~Ci~~ 206 (469)
...|.+|...|.--. --.||..||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 347889988775321 257999999999754
Done!