BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012165
(469 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 158/343 (46%), Gaps = 46/343 (13%)
Query: 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
+ V++ G AG+ + GR+ +++ E + PY+RP L+K YL
Sbjct: 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYL----------- 50
Query: 113 GFHTCVGSGGERQT----PE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
SGG+ + PE +++++ IE+I D + SID E + L+ SG ++YG L+
Sbjct: 51 ------KSGGDPNSLMFRPEKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLV 103
Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA-- 225
+ATG +R + LP V Y+R + +++ L + K +IG+E AA
Sbjct: 104 LATGAR-NRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATAR 162
Query: 226 AVGWKLD-----------------TTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 268
A G ++D ++ + + G++ G + A D RV V
Sbjct: 163 AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVV 221
Query: 269 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
L DG+T+ D +V+G+G P V + GI VD Q T P I AIGD A F
Sbjct: 222 LSDGNTLPCDLVVVGVGVIPNVE-IAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFE 280
Query: 329 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 371
+ T RVE V +A A+ C+ A L+ YD P+F+S
Sbjct: 281 SVRFGETMRVESVQNATDQAR-CVAARLTGDAKPYDGYPWFWS 322
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 174/388 (44%), Gaps = 47/388 (12%)
Query: 45 SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
S E + VIVG G+ AA ++G +GR+ ++ +E PYERP L+K YL
Sbjct: 3 SEVQAERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYL--- 58
Query: 105 DKKPARLPGFH-TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 163
AR F C+ + +++++K +EM V S+D T+ G ++Y
Sbjct: 59 ----AREKTFERICI------RPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEY 108
Query: 164 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKXXXXXXXYIGMEV 222
G LI ATG R +G L GVH +R DAD L++ L+ AK YIG+E
Sbjct: 109 GKLIWATGGDPRRL-SCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEA 167
Query: 223 AAAAVGWKLDTTRYEQL-------------------YQQNGVKFVKGASIKNLEAGSDGR 263
AA + ++ T E L ++ +GV GA++ +E G +
Sbjct: 168 AAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE-GDGTK 226
Query: 264 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 323
V V+++DGS I AD +++GIG P V G + G+ VD RT + ++AIGD
Sbjct: 227 VTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGD 285
Query: 324 VAAFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRK 382
AA D R+E V +A A K + A Y P+F+S ++ +
Sbjct: 286 CAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV-PYKATPWFWSNQYDLK----- 339
Query: 383 VWWQFFGDNVGETIEIGNFDPKIATFWI 410
Q G + G + DP +F +
Sbjct: 340 --LQTVGLSTGHDNAVLRGDPATRSFSV 365
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 154/349 (44%), Gaps = 37/349 (10%)
Query: 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
N N VIVG G A A G +G + +V P+ P L+K YL
Sbjct: 1 NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 55
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
A + +TP+ Y + I+++ VT+I+ ++Q +I + G+ L Y L++
Sbjct: 56 ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 107
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 226
ATG P G G Y+R + DA+ + L + YIG+EVAA A
Sbjct: 108 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 167
Query: 227 VGWKLDTTR-------------------YEQLYQQNGVKFVKGASIKNLEAGSDG-RVAA 266
+ + T YE L+++ GV G + E +D +V A
Sbjct: 168 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 227
Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
V EDG+ + AD ++ GIG P GL GI ++ +T P I A+GD A
Sbjct: 228 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 286
Query: 327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 375
F ++YDR R+E V +A + A+ I A+L + + P+F+S +E
Sbjct: 287 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 334
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 154/349 (44%), Gaps = 37/349 (10%)
Query: 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
N N VIVG G A A G +G + +V P+ P L+K YL
Sbjct: 2 NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 56
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
A + +TP+ Y + I+++ VT+I+ ++Q +I + G+ L Y L++
Sbjct: 57 ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 226
ATG P G G Y+R + DA+ + L + YIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168
Query: 227 VGWKLDTTR-------------------YEQLYQQNGVKFVKGASIKNLEAGSDG-RVAA 266
+ + T YE L+++ GV G + E +D +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228
Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
V EDG+ + AD ++ GIG P GL GI ++ +T P I A+GD A
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287
Query: 327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 375
F ++YDR R+E V +A + A+ I A+L + + P+F+S +E
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 335
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 128/298 (42%), Gaps = 37/298 (12%)
Query: 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH 115
I+G G A+ G +GR+ ++ E + PY+RP+L+K L ++P L
Sbjct: 7 IIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL---- 61
Query: 116 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175
+WY E I+M+ VT++D++ +T+ + G L ++++ATG A
Sbjct: 62 ---------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA- 111
Query: 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTR 235
R G LPGV +R D L S A + IG EVA A L T
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTI 171
Query: 236 YEQ-------------------LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 276
E L + GV+ G + +G++ V DG +
Sbjct: 172 LEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFV 229
Query: 277 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 334
AD+ +I +GA+P + GL G I VD T G+FA+GDVA++PL+ R
Sbjct: 230 ADSALICVGAEPADQLARQAGLACDRGVI-VDHCGATLAKGVFAVGDVASWPLRAGGR 286
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 137/325 (42%), Gaps = 34/325 (10%)
Query: 63 AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119
AG A+ +FV G + +V EA PY+RP L+K ++ D + RL C
Sbjct: 15 AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 179
++ PE +E + S D + T+ + G+ L YG+L++ATG P
Sbjct: 69 ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA----VGWKLDTTR 235
G +P VH +R + DA + + L + IG+E+AA A V L T+
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRV---------AAVKLEDGSTIDADTIVIGIGA 286
+ + + + G D R V L+DG+ I AD +V+GIG
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGV 237
Query: 287 KPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 346
+ GL GI VD RT P ++A+GDV + R R+E +A+
Sbjct: 238 LANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQN 296
Query: 347 SAQHCIKALLSAQTHTYDYLPYFYS 371
+ L+ Y LP+++S
Sbjct: 297 QGIAVARHLVDPTAPGYAELPWYWS 321
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 137/325 (42%), Gaps = 34/325 (10%)
Query: 63 AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119
AG A+ +FV G + +V EA PY+RP L+K ++ D + RL C
Sbjct: 15 AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 179
++ PE +E + S D + T+ + G+ L YG+L++ATG P
Sbjct: 69 ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA----VGWKLDTTR 235
G +P VH +R + DA + + L + IG+E+AA A V L T+
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRV---------AAVKLEDGSTIDADTIVIGIGA 286
+ + + + G D R V L+DG+ I AD +V+GIG
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGV 237
Query: 287 KPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 346
+ GL GI VD RT P ++A+GDV + R R+E +A+
Sbjct: 238 LANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQN 296
Query: 347 SAQHCIKALLSAQTHTYDYLPYFYS 371
+ L+ Y LP+++S
Sbjct: 297 QGIAVARHLVDPTAPGYAELPWYFS 321
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 147/358 (41%), Gaps = 67/358 (18%)
Query: 79 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 56 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 113
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 114 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 173
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTRYE--QLY 240
+ R + D AL + K ++G E+ A A+G K + E QL+
Sbjct: 174 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 232
Query: 241 ----------------------QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 233 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 290
Query: 279 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 335
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 291 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR- 348
Query: 336 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 393
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 389
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 153/377 (40%), Gaps = 78/377 (20%)
Query: 79 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 56 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 113
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
+ G+ ++ V +D+ + N G + Y ++ATG T ++ G
Sbjct: 114 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 173
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA------AVG-------- 228
+ R + D +L + K ++G E+A A A+G
Sbjct: 174 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFP 233
Query: 229 ---------------WKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
W ++ R E GVK + A ++++ S G++ +KL+DG
Sbjct: 234 EKGNMGKILPEYLSNWTMEKVRRE------GVKVMPNAIVQSVGV-SSGKL-LIKLKDGR 285
Query: 274 TIDADTIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLK 330
++ D IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K
Sbjct: 286 KVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIK 344
Query: 331 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 390
+ R RVEH DHA + L+ + T PY++ +F W G
Sbjct: 345 LGRR--RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGP 386
Query: 391 NVGETIEIGNFDPKIAT 407
+VG + IG D + T
Sbjct: 387 DVG-YVAIGLVDSSLPT 402
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 147/358 (41%), Gaps = 67/358 (18%)
Query: 79 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 80 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 137
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 138 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 197
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTRYE--QLY 240
+ R + D AL + K ++G E+ A A+G K + E QL+
Sbjct: 198 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 256
Query: 241 ----------------------QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 257 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 314
Query: 279 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 335
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 315 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 372
Query: 336 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 393
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 373 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 413
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 147/358 (41%), Gaps = 67/358 (18%)
Query: 79 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 75 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 132
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 133 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 192
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTRYE--QLY 240
+ R + D AL + K ++G E+ A A+G K + E QL+
Sbjct: 193 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 251
Query: 241 ----------------------QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 252 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 309
Query: 279 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 335
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 310 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 367
Query: 336 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 393
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 368 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 408
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 147/363 (40%), Gaps = 77/363 (21%)
Query: 79 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 38 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 95
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
+ G+ ++ V +D+ + N G + Y ++ATG T ++ G
Sbjct: 96 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 155
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA------AVG-------- 228
+ R + D +L + K ++G E+A A A+G
Sbjct: 156 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFP 215
Query: 229 ---------------WKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
W ++ R E GVK + A ++++ S G++ +KL+DG
Sbjct: 216 EKGNMGKILPEYLSNWTMEKVRRE------GVKVMPNAIVQSVGV-SSGKL-LIKLKDGR 267
Query: 274 TIDADTIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLK 330
++ D IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K
Sbjct: 268 KVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIK 326
Query: 331 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 390
+ R RVEH DHA + L+ + T PY++ +F W G
Sbjct: 327 LGRR--RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGP 368
Query: 391 NVG 393
+VG
Sbjct: 369 DVG 371
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 125 QTPEWYK-EKGIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
+ PE+++ K +E + + +ID +E + L T + LKY L++A G A+R P
Sbjct: 70 RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAA-AVGWKLDTTR 235
+ G L GV + ++ +A+ + ++ + K +IG+E+A + A W +DTT
Sbjct: 130 VE-GMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 236 YEQLYQ-------------------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 276
E Q +N V G + LE G +G+VA V + D T+D
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 277 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
AD +++ G P GL G I VD + RT P IFA GD P
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIP 299
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 52/313 (16%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187
+WY+++GIE+ + ID ++ +IT G+ + Y +L++ATG A R P+ + G
Sbjct: 68 DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARA-REPQ-----IKG 120
Query: 188 VHY---IRDVADADALISSLEKAKKXXXXXXXYIGMEVAA--AAVGWKLD---------- 232
Y +R + DAD + S+E + + +IG+E+A A G+ +
Sbjct: 121 KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG 180
Query: 233 -----TTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
+ + + ++ GVKF + + LEA +G L + I+ + IG
Sbjct: 181 LDEELSNMIKDMLEETGVKFFLNSEL--LEANEEG-----VLTNSGFIEGKVKICAIGIV 233
Query: 288 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 347
P V R G+++ GI +D FRT ++AIGD A + + + A
Sbjct: 234 PNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEY-------SGIIAGTAKAAME 285
Query: 348 AQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIAT 407
+ +L + Y++ F S VF++ K+ G+ GE G +
Sbjct: 286 QARVLADILKGEPRRYNF--KFRSTVFKFG----KLQIAIIGNTKGE----GKWIEDNTK 335
Query: 408 FWIDSGKLKGVLV 420
+ ++GK+ G +V
Sbjct: 336 VFYENGKIIGAVV 348
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 127/302 (42%), Gaps = 48/302 (15%)
Query: 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-----AYAPYERPALTKGYLFPLDKKP 108
+VI+GG A AA V + D +V+ E +YA P + G + +K
Sbjct: 39 YVIIGGDAAGMSAAMQIVRN---DENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLI 95
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKY 163
AR + + GI+ + VT +D EK+ + K Y
Sbjct: 96 AR--------------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY 141
Query: 164 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGME 221
L++ATG PE G L GVH ++ + DA+ ++ +LE K + IG+E
Sbjct: 142 DRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLE 200
Query: 222 VAAAAV---------------GWKLDTTRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVA 265
+A V G D E +Y++ ++ + +N++A + RV
Sbjct: 201 MAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVE 260
Query: 266 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 324
AV+ + G T AD +++ +G KP E + ++ G I+V+ +T + ++A GD
Sbjct: 261 AVETDKG-TYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDC 319
Query: 325 AA 326
A
Sbjct: 320 AT 321
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 26/227 (11%)
Query: 124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFP 178
R + + GI+ + VT +D EK+ + K Y L++ATG P
Sbjct: 97 RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-XP 155
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAV--------- 227
E G L GVH ++ + DA+ ++ +LE K + IG+E A V
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXI 215
Query: 228 ------GWKLDTTRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTI 280
G D E +Y++ ++ + +N++A + RV AV+ + G T AD +
Sbjct: 216 ERNDHIGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKG-TYKADLV 274
Query: 281 VIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 326
++ +G KP E + ++ G I+V+ +T + ++A GD A
Sbjct: 275 LVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCAT 321
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 34/218 (15%)
Query: 149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 208
E++ L+ +G+ L+ +++ATG +A P V Y R V +AL S E K
Sbjct: 116 ERKVLVEETGEELEARYILIATG-SAPLIPP-----WAQVDYERVVTSTEAL-SFPEVPK 168
Query: 209 KXXXXXXXYIGMEVAAA--AVGWKLDTTRY----------------EQLYQQNGVKFVKG 250
+ IG+E+ +G ++ Y E+++++ G+ G
Sbjct: 169 RLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTG 228
Query: 251 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNS-SVGGIQV 307
+ + + G A V+LE G ++AD +++ +G +P E GL++ G I V
Sbjct: 229 VRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPV 286
Query: 308 DGQFRTRMPGIFAIGDVAAFPLKMYDRT----ARVEHV 341
D RTR+P I+AIGDV P+ + + A VEH+
Sbjct: 287 DEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHM 324
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 30/195 (15%)
Query: 156 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXX 215
+S + + + I+ATG SR E LP + + D+ ++ E K
Sbjct: 127 DSAQTYTFKNAIIATG---SRPIE-----LPNFKFSNRILDSTGALNLGEVPKSLVVIGG 178
Query: 216 XYIGMEVAAAAVGWKLDTTRYE------------------QLYQQNGVKFVKGASIKNLE 257
YIG+E+ A + T E + ++ GV+ V A K E
Sbjct: 179 GYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAE 238
Query: 258 AGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRT 313
DG + + TIDAD +++ +G +P E++G+ ++ G I+VD Q RT
Sbjct: 239 EREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT 298
Query: 314 RMPGIFAIGDVAAFP 328
+P IFAIGD+ P
Sbjct: 299 SVPNIFAIGDIVPGP 313
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 92/231 (39%), Gaps = 39/231 (16%)
Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEK 180
+PE G + + VT++D E +T LITN K Y LI+ TG + P
Sbjct: 64 SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 181 IGGYLPG-----VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA---------- 225
+PG V+ ++ DA L KAK YIG E+A A
Sbjct: 122 ----IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNL 177
Query: 226 -----AVGWKLDTTRYEQL----YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 276
V +K + + Y+ +GV V G+ + E D + K DG I
Sbjct: 178 IDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIIT--KTLDGKEIK 235
Query: 277 ADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
+D ++ IG +P + +V + + G I D + IFA GD AA
Sbjct: 236 SDIAILCIGFRPNTELLKGKVAMLDN-GAIITDEYMHSSNRDIFAAGDSAA 285
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 27/235 (11%)
Query: 110 RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 169
PGF G + E K+ G Y D + D + +I K L ++I+A
Sbjct: 52 NFPGFEXITGPDLSTKXFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIA 111
Query: 170 TGCTASRFPEKIGGYLPGVHYI--RDVADADALISSLEKAKK--------XXXXXXXYIG 219
TG +KIG +PG + R V+ + K K+ ++
Sbjct: 112 TGAEY----KKIG--VPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLT 165
Query: 220 MEVAAAAVGWKLDTTRYEQLYQQNGVK-----FVKGASIKNLEAGSDGRVAAVKL---ED 271
+ + D R +++ Q K F+ ++K++ DG+V +V L +D
Sbjct: 166 KFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINE-KDGKVGSVTLTSTKD 224
Query: 272 GS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 324
GS T +AD + I IG KP +PF+ +G+ + VG I T +PGIFA GDV
Sbjct: 225 GSEETHEADGVFIYIGXKPLTAPFKDLGITNDVGYIVTKDDXTTSVPGIFAAGDV 279
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
D T E+L +Q NG++ + + +E +DG +V E G +D D +++ IG
Sbjct: 230 FDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRS 288
Query: 288 PTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEHV 341
P + G+ GG+QVD RT + I+AIGDV P+ + + A V+ V
Sbjct: 289 PRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTV 348
Query: 342 --------DHAR 345
DH R
Sbjct: 349 FGTNPRKTDHTR 360
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
D T E+L +Q NG++ + + +E +DG +V E G +D D +++ IG
Sbjct: 231 FDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRS 289
Query: 288 PTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEHV 341
P + G+ GG+QVD RT + I+AIGDV P+ + + A V+ V
Sbjct: 290 PRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTV 349
Query: 342 --------DHAR 345
DH R
Sbjct: 350 FGTTPRKTDHTR 361
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
D T E+L +Q NG++ + + +E +DG +V E G +D D +++ IG
Sbjct: 230 FDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRS 288
Query: 288 PTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEHV 341
P + G+ GG+QVD RT + I+AIGDV P+ + + A V+ V
Sbjct: 289 PRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTV 348
Query: 342 --------DHAR 345
DH R
Sbjct: 349 FGTTPRKTDHTR 360
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
D T E+L +Q NG++ + + +E +DG +V E G +D D +++ IG
Sbjct: 229 FDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRS 287
Query: 288 PTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEHV 341
P + G+ GG+QVD RT + I+AIGDV P+ + + A V+ V
Sbjct: 288 PRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTV 347
Query: 342 --------DHAR 345
DH R
Sbjct: 348 FGTTPRKTDHTR 359
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
D T E++ +Q NG++ + + + +DG V E G T+D D +++ IG
Sbjct: 230 FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRI 288
Query: 288 PTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEH 340
P + + VG+ + GG+QVD RT +P I+AIGD+ P+ + + A V+
Sbjct: 289 PRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDT 348
Query: 341 V--------DHAR 345
V DH R
Sbjct: 349 VFGNKPRKTDHTR 361
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
D T E++ +Q NG++ + + + +DG V E G T+D D +++ IG
Sbjct: 233 FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRI 291
Query: 288 PTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEH 340
P + + VG+ + GG+QVD RT +P I+AIGD+ P+ + + A V+
Sbjct: 292 PRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDT 351
Query: 341 V--------DHAR 345
V DH R
Sbjct: 352 VFGNKPRKTDHTR 364
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 45/243 (18%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
QTPE +K + +E+ + V +ID + + L+ S Y +L+++ G A P
Sbjct: 62 QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
G P H +R++ D D ++ +++ + +IG+E+ + + TT
Sbjct: 121 PIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 237 E------------------QLYQQNGVKFVKGASIKNLE-----------AGSDGRVAAV 267
E Q + GV G ++ + AG D +
Sbjct: 181 ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI 240
Query: 268 K------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFA 320
K L +G ++ D +++ IG +P GL +GGI+V+ +T P I+A
Sbjct: 241 KGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYA 300
Query: 321 IGD 323
+GD
Sbjct: 301 VGD 303
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 122/286 (42%), Gaps = 38/286 (13%)
Query: 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
+ +I+G G A AA+ + G D + +++ E Y PY RP L + + K +
Sbjct: 11 KILILGAGPAGFSAAKAAL--GKCDD-ITMINSEKYLPYYRPRLNE-----IIAKNKSID 62
Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
+ +WY++ I++I + TSID + + SG+ +KY LI+A+G
Sbjct: 63 DILI--------KKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGS 114
Query: 173 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK---KXXXXXXXYIGMEVAA----- 224
A++ +P I + D + ++ K K +G+E+A
Sbjct: 115 IANKIK------VPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDS 168
Query: 225 ---AAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 281
A++G L+ QL + G+ F+K K G + E G I + ++
Sbjct: 169 GTPASIGIILEYPLERQLDRDGGL-FLKD---KLDRLGIKIYTNSNFEEMGDLIRSSCVI 224
Query: 282 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF 327
+G KP + + + +S GI V+ T + I+A GDVA F
Sbjct: 225 TAVGVKPNLDFIKDTEI-ASKRGILVNDHMETSIKDIYACGDVAEF 269
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
+ N + G +++ E DGRV V + D + DAD +V+ +G +P + +
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
G I+ D RT P +FA+GD D + +AR+ + +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
+ N + G +++ E DGRV V + D + DAD +V+ +G +P + +
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
G I+ D RT P +FA+GD D + +AR+ + +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
+ N + G +++ E DGRV V + D + DAD +V+ +G +P + +
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
G I+ D RT P +FA+GD D + +AR+ + +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
+ N + G +++ E DGRV V + D + DAD +V+ +G +P + +
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
G I+ D RT P +FA+GD D + +AR+ + +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
+ N + G +++ E DGRV V + D + DAD +V+ +G +P + +
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
G I+ D RT P +FA+GD D + +AR+ + +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
QTPE +K + +E+ + V +ID + + L+ S Y +L+++ G A P
Sbjct: 62 QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
G P H +R++ D D ++ +++ + +IG+E + + TT
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 237 E------------------QLYQQNGVKFVKGASIKNLE-----------AGSDGRVAAV 267
E Q + GV G ++ + AG D +
Sbjct: 181 ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI 240
Query: 268 K------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFA 320
K L +G ++ D ++ IG +P GL +GGI+V+ +T P I+A
Sbjct: 241 KGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPAIYA 300
Query: 321 IGD 323
+GD
Sbjct: 301 VGD 303
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
QTPE +K + +E+ + V +ID + + L+ S Y +L+++ G A P
Sbjct: 62 QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
G P H +R++ D D ++ +++ + +IG+E + + TT
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 237 E------------------QLYQQNGVKFVKGASIKNLE-----------AGSDGRVAAV 267
E Q + GV G ++ + AG D +
Sbjct: 181 ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI 240
Query: 268 K------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFA 320
K L +G ++ D ++ IG +P GL +GGI+V+ +T P I+A
Sbjct: 241 KGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPAIYA 300
Query: 321 IGD 323
+GD
Sbjct: 301 VGD 303
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 227 VGWKLDTTR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTI 280
VG ++ ++ ++++ Q+ G KF + SDG++ V +E S I D +
Sbjct: 216 VGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVL 274
Query: 281 VIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337
++ IG +P E +G+ G I V+ +F+T++P I+AIGDV A P+ +
Sbjct: 275 LVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAH----- 329
Query: 338 VEHVDHARQSAQHCIKALLSAQTHT-YDYLP 367
A C++ + H Y+ +P
Sbjct: 330 -----KAEDEGIICVEGMAGGAVHIDYNCVP 355
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 227 VGWKLDTTR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTI 280
VG ++ ++ ++++ Q+ G KF + SDG++ V +E S I D +
Sbjct: 216 VGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVL 274
Query: 281 VIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337
++ IG +P E +G+ G I V+ +F+T++P I+AIGDV A P+ +
Sbjct: 275 LVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAH----- 329
Query: 338 VEHVDHARQSAQHCIKALLSAQTHT-YDYLP 367
A C++ + H Y+ +P
Sbjct: 330 -----KAEDEGIICVEGMAGGAVHIDYNCVP 355
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 227 VGWKLDTTR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTI 280
VG ++ ++ ++++ Q+ G KF + SDG++ V +E S I D +
Sbjct: 237 VGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVL 295
Query: 281 VIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337
++ IG +P E +G+ G I V+ +F+T++P I+AIGDV A P+ +
Sbjct: 296 LVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAH----- 350
Query: 338 VEHVDHARQSAQHCIKALLSAQTHT-YDYLP 367
A C++ + H Y+ +P
Sbjct: 351 -----KAEDEGIICVEGMAGGAVHIDYNCVP 376
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
+ N + G +++ E DGRV V + D + DAD +V+ +G +P + +
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
G I+ D RT P +FA+GD D + +A + + +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNL 313
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 260 SDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 315
S+G + V L DGS T++AD ++I IG K + P R L + VD +T +
Sbjct: 231 SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSV 290
Query: 316 PGIFAIGDVAAFPLKM 331
G++A GD+A +P K+
Sbjct: 291 DGLYAAGDIAYYPGKL 306
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 43/245 (17%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 180
E + G ++ + PV SID + +T L+ + Y LI ATG P K
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 181 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAA------- 225
L + +++ ++ +I+ LE K+ YIG+E+A A
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 226 -----------AVGWKLDTTR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
A + D T + +++G++ G ++K E +G+V + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 274 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 332
D D +++ +G +P + ++ L + G V+ + T +PG++AIGD A +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 333 DRTAR 337
D R
Sbjct: 332 DNATR 336
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 43/245 (17%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 180
E + G ++ + PV SID + +T L+ + Y LI ATG P K
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 181 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAA------- 225
L + +++ ++ +I+ LE K+ YIG+E+A A
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 226 -----------AVGWKLDTTR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
A + D T + +++G++ G ++K E +G+V + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 274 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 332
D D +++ +G +P + ++ L + G V+ + T +PG++AIGD A +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 333 DRTAR 337
D R
Sbjct: 332 DNATR 336
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGL 298
++ G++ + I+++ A +DGR A + G + AD + + +G P + E G+
Sbjct: 222 EEKGIRILCEDIIQSVSADADGRRVATTXKHGEIV-ADQVXLALGRXPNTNGLGLEAAGV 280
Query: 299 NSS-VGGIQVDGQFRTRMPGIFAIGDV 324
++ +G I VD RT PGI+A+GDV
Sbjct: 281 RTNELGAIIVDAFSRTSTPGIYALGDV 307
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 265 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGD 323
A V+L+ GS I D +++ IG +P S + GL V G I+V+ +F+T P I+AIGD
Sbjct: 259 AVVRLKSGSVIQTDXLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVS 291
++++ ++ G+KF + ++ DG V+ G + I+AD +++ G P S
Sbjct: 223 QFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTS 282
Query: 292 --PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 348
+++G+ + +G I V+ +F T + G++AIGDV P+ + A +
Sbjct: 283 GLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAH----------KAEEDG 332
Query: 349 QHCIKALLSAQTHT-YDYLP 367
C++ L H YD +P
Sbjct: 333 VACVEYLAGKVGHVDYDKVP 352
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 32/202 (15%)
Query: 145 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204
+++++K+ N+ ++ ++VATG A FPE I G+ G D+D
Sbjct: 134 NVEVQKRD---NTTEVYSANHILVATGGKAI-FPENIPGFELG-------TDSDGFFRLE 182
Query: 205 EKAKKXXXXXXXYIGMEVAAAAVGWKLDT---TRYEQL---------------YQQNGVK 246
E+ KK YIG+E+A G +T R E + Y + G+
Sbjct: 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGIN 242
Query: 247 FVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSP-FERVGLN-SSVG 303
K + I +E + + + D +I D D ++ IG K + E VG+ +S
Sbjct: 243 VHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHD 302
Query: 304 GIQVDGQFRTRMPGIFAIGDVA 325
I D T +P I+++GDV
Sbjct: 303 QIIADEYQNTNVPNIYSLGDVV 324
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGSTIDADTIVIGIGAKPTVS 291
+ ++ + G+ F GA + DG VK + +T+DA+ ++I G KP+
Sbjct: 244 QLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTD 303
Query: 292 PF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
+ G+ S G +++D F+T + G++AIGDV P
Sbjct: 304 GLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 244 GVKFVKGASIKNLEAG----SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 299
G+ G S++ E G +DG+ ++LE AD +++ +G +P F L+
Sbjct: 226 GIALHLGHSVEGYENGCLLANDGKGGQLRLE------ADRVLVAVGRRPRTKGFNLECLD 279
Query: 300 SSVGG--IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 341
+ G I +D + +T M ++AIGDVA P+ + A+ E V
Sbjct: 280 LKMNGAAIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMV 323
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 31/237 (13%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
G+ + + +R++ D DA+ ++ + K Y+ +EV L T
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--------------GSTIDADTIVI 282
+ + N K + + + D R +L + G D I+
Sbjct: 177 HRSDKIN--KLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIE 234
Query: 283 GIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 338
G+G P E + G I V+ +F T +P I+AIGD+A + D A V
Sbjct: 235 GVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 31/237 (13%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
G+ + + +R++ D DA+ ++ + K Y+ +EV L T
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--------------GSTIDADTIVI 282
+ + N K + + + D R +L + G D I+
Sbjct: 177 HRSDKIN--KLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIE 234
Query: 283 GIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 338
G+G P E + G I V+ +F T +P I+AIGD+A + D A V
Sbjct: 235 GVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 31/237 (13%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
G+ + + +R++ D DA+ ++ + K Y+ +EV L T
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--------------GSTIDADTIVI 282
+ + N K + + + D R +L + G D I+
Sbjct: 177 HRSDKIN--KLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIE 234
Query: 283 GIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 338
G+G P E + G I V+ +F T +P I+AIGD+A + D A V
Sbjct: 235 GVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 31/237 (13%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 63 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 120
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
G+ + + +R++ D DA+ ++ + K Y+ +EV L T
Sbjct: 121 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--------------GSTIDADTIVI 282
+ + N K + + + D R +L + G D I+
Sbjct: 178 HRSDKIN--KLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIE 235
Query: 283 GIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 338
G+G P E + G I V+ +F T +P I+AIGD+A + D A V
Sbjct: 236 GVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 292
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 31/237 (13%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
G+ + + +R++ D DA+ ++ + K Y+ +EV L T
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--------------GSTIDADTIVI 282
+ + N K + + + D R +L + G D I+
Sbjct: 177 HRSDKIN--KLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIE 234
Query: 283 GIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 338
G+G P E + G I V+ +F T +P I+AIGD+A + D A V
Sbjct: 235 GVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 28/143 (19%)
Query: 217 YIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKG---ASIKNL 256
Y+ +E A G LD T + + +++G+KF++ I+ +
Sbjct: 200 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQI 259
Query: 257 EAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQVD 308
EAG+ GR V A TI+ +T+++ +G E VG +N G I V
Sbjct: 260 EAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVT 319
Query: 309 GQFRTRMPGIFAIGDVAAFPLKM 331
+ +T +P I+AIGD+ L++
Sbjct: 320 DEEQTNVPYIYAIGDILEGKLEL 342
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 31/237 (13%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
G+ + + +R++ D DA+ ++ + K Y+ +EV L T
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--------------GSTIDADTIVI 282
+ + N K + + + D R +L + G D I+
Sbjct: 177 HRSDKIN--KLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIE 234
Query: 283 GIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 338
G+G P E + G I V+ +F T +P I+AIGD+A + D A V
Sbjct: 235 GVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 31/237 (13%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
G+ + + +R++ D DA+ ++ + K Y+ +EV L T
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--------------GSTIDADTIVI 282
+ + N K + + + D R +L + G D I+
Sbjct: 177 HRSDKIN--KLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIE 234
Query: 283 GIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 338
G+G P E + G I V+ +F T +P I+AIGD+A + D A V
Sbjct: 235 GVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 28/143 (19%)
Query: 217 YIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKG---ASIKNL 256
Y+ +E A G LD T + + +++G+KF++ I+ +
Sbjct: 200 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQI 259
Query: 257 EAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQVD 308
EAG+ GR V A TI+ +T+++ +G E VG +N G I V
Sbjct: 260 EAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVT 319
Query: 309 GQFRTRMPGIFAIGDVAAFPLKM 331
+ +T +P I+AIGD+ L++
Sbjct: 320 DEEQTNVPYIYAIGDILEGKLEL 342
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVS 291
++ ++ G+ F + + + D V + +ED T ++A+ +++ +G +P ++
Sbjct: 231 QKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290
Query: 292 PF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 329
E++GL G + +D QF ++ P I +GDV P+
Sbjct: 291 GLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM 331
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 115/299 (38%), Gaps = 43/299 (14%)
Query: 49 NENREFVIVGGGNAAGYAARTFVEHGMADGR--LCIVSKEAYAPYERPALTKGYLFPLDK 106
+E VI+G G A AR + + DG L +++ + Y +P L+ G+ D
Sbjct: 2 SERAPLVIIGTGLAGYNLAREWRK---LDGETPLLMITADDGRSYSKPMLSTGFSKNKD- 57
Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 165
G P E+ ++ VT ID Q + ++ +Y
Sbjct: 58 ------------ADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRD 104
Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVA-- 223
L++A G R P + G ++ I D+ D + ++ IG E A
Sbjct: 105 LVLAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFAND 163
Query: 224 AAAVGWKLDTTR-YEQLY----------------QQNGVKFVKGASIKNLEAGSDGRVAA 266
++ G++LD EQ+ + GV+F G + +L+ +G A
Sbjct: 164 LSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEA- 222
Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 325
L DG I D +V +G +P GL + G I VD RT I+A+GD A
Sbjct: 223 -HLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCA 279
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 31/181 (17%)
Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 224
+I+A+G ++ LPGV Y D +S K + YIG+E+A+
Sbjct: 136 MIIASGAETAKLR------LPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIAS 189
Query: 225 AAVGWKLDTTRYEQLYQ-------QNGVKFVKGASIKNLEAGSDGRVAAVK--------- 268
+ T E L + Q+ V + SI L + V VK
Sbjct: 190 IFRLMGVQTHIIEMLDRALITLEDQDIVNTL--LSILKLNIKFNSPVTEVKKIKDDEYEV 247
Query: 269 ---LEDGS--TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDGQFRTRMPGIFAIG 322
+DGS +I +++V+ G +P + R +GL+ S GI VD +T +P +FA G
Sbjct: 248 IYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATG 307
Query: 323 D 323
D
Sbjct: 308 D 308
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 28/136 (20%)
Query: 217 YIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKG---ASIKNL 256
Y+ +E A G LD T + + +++G+KF++ ++ +
Sbjct: 220 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 279
Query: 257 EAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQVD 308
EAG+ GR+ V S + +T+++ IG E VG +N G I V
Sbjct: 280 EAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVT 339
Query: 309 GQFRTRMPGIFAIGDV 324
+ +T +P I+AIGD+
Sbjct: 340 DEEQTNVPYIYAIGDI 355
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 28/136 (20%)
Query: 217 YIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKG---ASIKNL 256
Y+ +E A G LD T + + +++G+KF++ ++ +
Sbjct: 214 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 273
Query: 257 EAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQVD 308
EAG+ GR+ V S + +T+++ IG E VG +N G I V
Sbjct: 274 EAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVT 333
Query: 309 GQFRTRMPGIFAIGDV 324
+ +T +P I+AIGD+
Sbjct: 334 DEEQTNVPYIYAIGDI 349
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 28/136 (20%)
Query: 217 YIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKG---ASIKNL 256
Y+ +E A G LD T + + +++G+KF++ ++ +
Sbjct: 220 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 279
Query: 257 EAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQVD 308
EAG+ GR+ V S + +T+++ IG E VG +N G I V
Sbjct: 280 EAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVT 339
Query: 309 GQFRTRMPGIFAIGDV 324
+ +T +P I+AIGD+
Sbjct: 340 DEEQTNVPYIYAIGDI 355
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTV 290
Y Q ++ + ++ A + + G +V VK +D +T I+ D + I +G P
Sbjct: 196 YVQEIKKRNIPYIMNAQVTEI-VGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQT 254
Query: 291 SPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 326
S + G+ G I VD + RT +PG++A GDV +
Sbjct: 255 SFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTS 291
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 28/136 (20%)
Query: 217 YIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKG---ASIKNL 256
Y+ +E A G LD T + + +++G+KF++ ++ +
Sbjct: 222 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 281
Query: 257 EAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQVD 308
EAG+ GR+ V S + +T+++ IG E VG +N G I V
Sbjct: 282 EAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVT 341
Query: 309 GQFRTRMPGIFAIGDV 324
+ +T +P I+AIGD+
Sbjct: 342 DEEQTNVPYIYAIGDI 357
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGSTIDADTIVIGIGAKPTVS- 291
E+ + + GV+ KN A S R A V + DG T++ ++ IG+ P S
Sbjct: 229 LEESFAERGVRL-----FKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSG 283
Query: 292 -PFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGD 323
ERVG+ G + VD RT GI+A GD
Sbjct: 284 LGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGD 317
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 32/197 (16%)
Query: 148 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 207
++ +TL N G+ + +++ATG S P+ +PGV Y D+D +
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 208 KKXXXXXXXYIGMEVAAAAVGWKLDTTRYE------------------QLYQQNGVKFVK 249
++ YIG+E+ G T +E ++ G +
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHT 227
Query: 250 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGG-IQ 306
A K + +DG + ++LEDG + D ++ IG +P E G+ ++ G I
Sbjct: 228 NAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIV 286
Query: 307 VDGQFRTRMPGIFAIGD 323
VD T + GI+A+GD
Sbjct: 287 VDKYQNTNIEGIYAVGD 303
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 36/193 (18%)
Query: 160 LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 218
LL +++ATG R+P ++ G L G+ +D + E K Y+
Sbjct: 145 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 196
Query: 219 GMEVAAAAVGWKLDTTRY----------EQL-------YQQNGVKFVKGASIKNLEAGSD 261
+E A G LDTT +Q+ + +G +F+KG +++
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT 256
Query: 262 GRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGL--NSSVGGIQVDGQFR 312
++ V ED + T DT++ IG P E+ G+ N I VD Q
Sbjct: 257 NQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEA 315
Query: 313 TRMPGIFAIGDVA 325
T +P I+AIGDVA
Sbjct: 316 TSVPHIYAIGDVA 328
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
DT + L +Q NG++ + + DG V DG+ D D +++ IG
Sbjct: 250 FDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGS-NHVHFNDGTEEDYDQVMLAIGRV 308
Query: 288 PTVSPFE------RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTAR 337
P + R G N G +QVD +T + I+AIGDV P+ + + A
Sbjct: 309 PRSQALQLDKAGVRTGKN---GAVQVDAYSKTSVDNIYAIGDVTNRVMLTPVAINEGAAF 365
Query: 338 VEHV 341
VE V
Sbjct: 366 VETV 369
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
DT + L +Q NG++ + + DG V DG+ D D +++ IG
Sbjct: 250 FDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGS-NHVHFNDGTEEDYDQVMLAIGRV 308
Query: 288 PTVSPFE------RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTAR 337
P + R G N G +QVD +T + I+AIGDV P+ + + A
Sbjct: 309 PRSQALQLDKAGVRTGKN---GAVQVDAYSKTSVDNIYAIGDVTNRVMLTPVAINEGAAF 365
Query: 338 VEHV 341
VE V
Sbjct: 366 VETV 369
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 36/193 (18%)
Query: 160 LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 218
LL +++ATG R+P ++ G L G+ +D + E K Y+
Sbjct: 171 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 222
Query: 219 GMEVAAAAVGWKLDTTRY----------EQL-------YQQNGVKFVKGASIKNLEAGSD 261
+E A G LDTT +Q+ + +G +F+KG +++
Sbjct: 223 ALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT 282
Query: 262 GRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG--IQVDGQFR 312
++ V ED + T DT++ IG P E+ G++++ I VD Q
Sbjct: 283 NQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEA 341
Query: 313 TRMPGIFAIGDVA 325
T +P I+AIGDVA
Sbjct: 342 TSVPHIYAIGDVA 354
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
D+ +QL +Q NG+ + + +DG V E G+ D D +++ IG
Sbjct: 229 FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRV 287
Query: 288 PTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 324
P E+ G+ + G I+VD +T + I+AIGDV
Sbjct: 288 PRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
D+ +QL +Q NG+ + + +DG V E G+ D D +++ IG
Sbjct: 229 FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRV 287
Query: 288 PTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 324
P E+ G+ + G I+VD +T + I+AIGDV
Sbjct: 288 PRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 275 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 331
++ D ++I G + P GL I+VD T +PG++A GD+ +P K+
Sbjct: 239 LEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTXATSIPGVYACGDIVTYPGKL 295
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 28/221 (12%)
Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI- 181
T E + + I+++ V + D+E Q + + Y LI+ATG AS+F +I
Sbjct: 64 TEEELRRQKIQLLLNREVVAXDVENQLIAWTRKEEQQWYSYDKLILATG--ASQFSTQIR 121
Query: 182 GGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTRYEQL-- 239
G + + ++ A A + LE ++ IG E V K +E L
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGXEAIDFLVKXKKTVHVFESLEN 181
Query: 240 -----------------YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 282
++ V F ++ +E ++G V ++ I D+ +
Sbjct: 182 LLPKYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQE---ISCDSGIF 238
Query: 283 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 323
+ P ++ ++ + I VD +T +P +FAIGD
Sbjct: 239 ALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGD 279
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
D+ +QL +Q NG+ + + +DG V E G+ D D +++ IG
Sbjct: 230 FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRV 288
Query: 288 PTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 324
P ++ G+ + G I+VD +T + I+AIGDV
Sbjct: 289 PRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 328
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
D+ +QL +Q NG+ + + +DG V E G+ D D +++ IG
Sbjct: 230 FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRV 288
Query: 288 PTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 324
P ++ G+ + G I+VD +T + I+AIGDV
Sbjct: 289 PRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 328
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 238 QLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 296
+LY ++ GV F G K L D + V+ D ++ DT++ IG K +
Sbjct: 270 KLYMEEQGVMFKNGILPKKLTKMDDKIL--VEFSDKTSELYDTVLYAIGRKGDIDGLNLE 327
Query: 297 GLNSSVGG----IQVDGQFRTRMPGIFAIGDVA 325
LN +V I D T +P IFA+GDVA
Sbjct: 328 SLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVA 360
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 278 DTIVIGIGAKPT--VSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 329
D +++ G P + E+ G+ + G I+VD Q RT +P I+AIGD+ P+
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 330
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 278 DTIVIGIGAKPT--VSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 329
D +++ G P + E+ G+ + G I+VD Q RT +P I+AIGD+ P+
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 330
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVS 291
E + ++ V+FV + +K ++ D V V +E+ T ++ + + I IG P
Sbjct: 197 ETVKKKPNVEFVLNSVVKEIKG--DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTD 254
Query: 292 PFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAA 326
+ G+ + G I+VD RT +PG+FA GD +
Sbjct: 255 FAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS 290
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVS 291
E + ++ V+FV + +K ++ D V V +E+ T ++ + + I IG P
Sbjct: 197 ETVKKKPNVEFVLNSVVKEIKG--DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTD 254
Query: 292 PFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAA 326
+ G+ + G I+VD RT +PG+FA GD +
Sbjct: 255 FAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS 290
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 32/197 (16%)
Query: 148 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 207
++ +TL N G+ + +++ATG S P+ +PGV Y D+D +
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 208 KKXXXXXXXYIGMEVAAAAVGWKLDTTRYE------------------QLYQQNGVKFVK 249
++ YI +E+A G T + ++ G +
Sbjct: 168 ERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHT 227
Query: 250 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGG-IQ 306
A K + +DG + ++LEDG + D ++ IG +P E G+ ++ G I
Sbjct: 228 NAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIV 286
Query: 307 VDGQFRTRMPGIFAIGD 323
VD T + GI+A+GD
Sbjct: 287 VDKYQNTNIEGIYAVGD 303
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 278 DTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 332
D +++ +G +P + + +S V G I VD +T +PG+FAIGDV M
Sbjct: 270 DKLIVAVGRRPVTTDL--LAADSGVTLDERGFIYVDDHCKTSVPGVFAIGDVVRGA--ML 325
Query: 333 DRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLP 367
A E V A + A H AQ + YD +P
Sbjct: 326 AHKASEEGVMVAERIAGH------KAQMN-YDLIP 353
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGIGAKPTVS--PF 293
E ++N + V A + ++ SD ++ + L DG + D ++ +G P
Sbjct: 224 ENDMKKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKL 282
Query: 294 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 342
E++ + ++ I VD RT + I+A+GD M ++ +E ++
Sbjct: 283 EKLNVETNNNYIVVDENQRTSVNNIYAVGDCC-----MVKKSKEIEDLN 326
>pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|A Chain A, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|M Chain M, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 577
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 284 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 334
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|A Chain A, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|M Chain M, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
Length = 602
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 284 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 334
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|M Chain M, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
Length = 602
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 284 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 334
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|M Chain M, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
Length = 602
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 284 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 334
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 281 VIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 336
++G+G T P V + + GG+ VD RT + G++AIG+V+ L +R A
Sbjct: 332 LLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMA 388
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--GSTIDA-DTIVIGIGAKPTVSPF 293
+++ + G+K + GA + E + + VK D G A D +++ +G +P +
Sbjct: 228 QKILTKQGLKILLGARVTGTEVKN--KQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDL 285
Query: 294 ERVGLNSSV-----GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 348
+ +S V G I VD T +PG++AIGDV M A E V A + A
Sbjct: 286 --LAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA--MLAHKASEEGVVVAERIA 341
Query: 349 QHCIKALLSAQTHTYDYLP 367
H AQ + YD +P
Sbjct: 342 GH------KAQMN-YDLIP 353
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
VK + ++ D +++ G ++ P + GL+ I V T + G FA GD+
Sbjct: 229 VKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICT 288
Query: 327 FPLKM 331
+ K+
Sbjct: 289 YEGKV 293
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 281 VIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFRTRMPGIFAIGDVA 325
++G+G T P V + + GG+ VD RT + G++AIG+V+
Sbjct: 332 LLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVS 377
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 271 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 330
D I+ I + IG P + E + +G I +D + T + G+FA GD P K
Sbjct: 225 DIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKI 181
WY E Y+ + ++I Q L + K Y IV +GCT R P+K+
Sbjct: 209 WYTPIRREWYYEVIIVRVEINGQDLKMDC-KEYNYDKSIVDSGCTNLRLPKKV 260
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 303 GGIQVDGQFRTRMPGIFAIGDVAAFPL 329
G I+V+ + T +PG++AIGD A PL
Sbjct: 289 GFIRVNARMETSVPGVYAIGDAARPPL 315
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 71/195 (36%), Gaps = 25/195 (12%)
Query: 155 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKXXX 212
T SG +LK S+I+ATG +PG R V L K K+
Sbjct: 307 TASGAVLKARSIIIATGAKWRNM------NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAV 360
Query: 213 XXXXYIGMEVAAAAVGWKLDTTRYE-------QLYQQNGVKFVKGASI----KNLEAGSD 261
G+E A G T E Q+ V+ +K I + E D
Sbjct: 361 IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGD 420
Query: 262 G-RVAAVKLEDGSTIDADTIVIG-----IGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 315
G +V ++ D + D ++ + IG P E + +G I +D + T +
Sbjct: 421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSV 480
Query: 316 PGIFAIGDVAAFPLK 330
G+FA GD P K
Sbjct: 481 KGVFAAGDCTTVPYK 495
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 237 EQLYQQNGVKFVKGASIKNL-EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF-- 293
E+ +++ GV + ++++ + GS V K + A+ ++ IG P V +
Sbjct: 221 EKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGL 280
Query: 294 ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 324
++ G+ + I VD RT + I+AIGDV
Sbjct: 281 DKAGVALTDRKAIGVDDYMRTNVGHIYAIGDV 312
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPFE-- 294
++ G+ F++ ++E DG++ V+ + S DT++ IG K V
Sbjct: 234 EERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLP 293
Query: 295 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 324
G+ I VD Q T + I+A+GD+
Sbjct: 294 NAGVTVQKDKIPVDSQEATNVANIYAVGDI 323
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPFE-- 294
++ G+ F++ ++E DG++ V+ + S DT++ IG K V
Sbjct: 238 EERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLP 297
Query: 295 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 324
G+ I VD Q T + I+A+GD+
Sbjct: 298 NAGVTVQKDKIPVDSQEATNVANIYAVGDI 327
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPFE-- 294
++ G+ F++ ++E DG++ V+ + S DT++ IG K V
Sbjct: 238 EERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLP 297
Query: 295 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 324
G+ I VD Q T + I+A+GD+
Sbjct: 298 NAGVTVQKDKIPVDSQEATNVANIYAVGDI 327
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-------TARVEHVDHARQSAQHCIK 353
S+GGI+ D + ++ G+F+ G+ A + + ++R A V + A+HC
Sbjct: 371 SMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCAN 430
Query: 354 ALLSAQTHTYD 364
+ +T T +
Sbjct: 431 TQVDLETKTLE 441
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-------TARVEHVDHARQSAQHCIK 353
S+GGI+ D + ++ G+F+ G+ A + + ++R A V + A+HC
Sbjct: 371 SMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCAN 430
Query: 354 ALLSAQTHTYD 364
+ +T T +
Sbjct: 431 TQVDLETKTLE 441
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-------TARVEHVDHARQSAQHCIK 353
S+GGI+ D + ++ G+F+ G+ A + + ++R A V + A+HC
Sbjct: 371 SMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCAN 430
Query: 354 ALLSAQTHTYD 364
+ +T T +
Sbjct: 431 TQVDLETKTLE 441
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 21/219 (9%)
Query: 127 PEWY-KEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGY 184
PE + K++GI++ V +D + N G K ++ L+ A G + + P G
Sbjct: 65 PEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGAS-PQVPAIEGVN 123
Query: 185 LPGVHYIRDVADADALISSLEKAKKXXXXXXXYIG----MEVAAAAVGWKLDT-TRYEQL 239
L GV DA A+ +EK K M A AA G + R E++
Sbjct: 124 LKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV 183
Query: 240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------------DGSTIDADTIVIGIGAK 287
+++ K V + L+ + R+ + ++ D A+ +++ G K
Sbjct: 184 LRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIK 243
Query: 288 PTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 325
P + +++G+ G I + + +T + ++A GDVA
Sbjct: 244 PNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVA 282
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 237 EQLYQQNGVKFVKGASIKNL-EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF-- 293
E+ +++ GV + ++++ + GS V K + A+ ++ IG P V +
Sbjct: 219 EKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGL 278
Query: 294 ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 324
++ G+ + I VD RT + I+AIGDV
Sbjct: 279 DKAGVALTDRKAIGVDDYXRTNVGHIYAIGDV 310
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 231 LDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGIGAKPT 289
L T E ++ Q G++ ++ LE D + + +DG+ ++ D+++ +G P
Sbjct: 209 LSATLAENMHAQ-GIETHLEFAVAALE--RDAQGTTLVAQDGTRLEGFDSVIWAVGRAPN 265
Query: 290 VSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 324
E G+ S G + D T +PG++A+GD+
Sbjct: 266 TRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI 303
>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
pdb|2QAE|B Chain B, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
Length = 468
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 274 TIDADTIVIGIGAKPTVSPFERVGLN---SSVGGIQVDGQFRTRMPGIFAIGDV 324
T+ + +++ +G +P +N + G +++ F T +P ++AIGDV
Sbjct: 262 TVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,790,733
Number of Sequences: 62578
Number of extensions: 586578
Number of successful extensions: 1596
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1449
Number of HSP's gapped (non-prelim): 143
length of query: 469
length of database: 14,973,337
effective HSP length: 102
effective length of query: 367
effective length of database: 8,590,381
effective search space: 3152669827
effective search space used: 3152669827
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)