Query 012165
Match_columns 469
No_of_seqs 444 out of 3333
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 23:44:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 4.8E-56 1E-60 443.9 45.5 371 50-449 2-393 (396)
2 KOG1336 Monodehydroascorbate/f 100.0 3.4E-52 7.5E-57 397.4 34.5 383 50-458 73-476 (478)
3 PRK14989 nitrite reductase sub 100.0 7.8E-46 1.7E-50 395.6 44.1 363 51-442 3-394 (847)
4 TIGR02374 nitri_red_nirB nitri 100.0 6.5E-46 1.4E-50 397.0 42.8 358 54-442 1-383 (785)
5 PRK04965 NADH:flavorubredoxin 100.0 9.7E-46 2.1E-50 367.6 40.5 343 51-427 2-367 (377)
6 COG1251 NirB NAD(P)H-nitrite r 100.0 1.6E-46 3.5E-51 373.9 29.4 362 50-442 2-388 (793)
7 PRK13512 coenzyme A disulfide 100.0 2.7E-43 5.9E-48 355.9 37.9 381 52-461 2-435 (438)
8 PRK09564 coenzyme A disulfide 100.0 7.1E-43 1.5E-47 355.0 36.4 378 53-455 2-432 (444)
9 COG1249 Lpd Pyruvate/2-oxoglut 100.0 6.3E-41 1.4E-45 332.1 32.4 378 49-460 2-454 (454)
10 PRK06370 mercuric reductase; V 100.0 8.4E-40 1.8E-44 333.4 35.8 385 48-465 2-458 (463)
11 PRK09853 putative selenate red 100.0 1.8E-41 3.9E-46 359.3 24.3 332 2-374 478-856 (1019)
12 PRK05249 soluble pyridine nucl 100.0 8.1E-40 1.8E-44 333.9 35.1 385 48-465 2-458 (461)
13 PRK14694 putative mercuric red 100.0 1.1E-39 2.3E-44 332.7 34.0 385 47-464 2-457 (468)
14 PRK12831 putative oxidoreducta 100.0 3.5E-41 7.5E-46 341.3 22.7 321 2-357 79-458 (464)
15 PRK06116 glutathione reductase 100.0 5.7E-40 1.2E-44 333.7 30.7 374 50-459 3-449 (450)
16 TIGR01316 gltA glutamate synth 100.0 4.3E-41 9.3E-46 340.1 22.3 317 3-356 68-446 (449)
17 PLN02507 glutathione reductase 100.0 4.3E-39 9.3E-44 328.9 36.6 379 49-461 23-484 (499)
18 TIGR01424 gluta_reduc_2 glutat 100.0 7.3E-40 1.6E-44 331.9 29.2 373 51-459 2-445 (446)
19 TIGR01421 gluta_reduc_1 glutat 100.0 2.7E-39 5.8E-44 327.4 32.5 374 51-459 2-449 (450)
20 PRK06467 dihydrolipoamide dehy 100.0 2.3E-39 5E-44 329.7 31.1 385 49-466 2-461 (471)
21 PRK06416 dihydrolipoamide dehy 100.0 5.7E-39 1.2E-43 327.6 33.8 383 50-465 3-457 (462)
22 PRK06115 dihydrolipoamide dehy 100.0 3.5E-39 7.6E-44 328.2 31.5 386 50-467 2-463 (466)
23 COG1252 Ndh NADH dehydrogenase 100.0 2.6E-39 5.7E-44 312.5 26.3 279 50-357 2-329 (405)
24 PRK08010 pyridine nucleotide-d 100.0 4.5E-38 9.7E-43 319.0 35.9 378 50-461 2-438 (441)
25 PRK05976 dihydrolipoamide dehy 100.0 5.5E-38 1.2E-42 320.7 35.9 383 50-463 3-465 (472)
26 PRK07845 flavoprotein disulfid 100.0 1.1E-38 2.3E-43 324.7 30.3 383 51-465 1-461 (466)
27 PTZ00058 glutathione reductase 100.0 4.2E-38 9.1E-43 322.7 34.4 391 48-463 45-560 (561)
28 PLN02546 glutathione reductase 100.0 9.2E-39 2E-43 327.8 27.8 375 50-460 78-532 (558)
29 PRK07818 dihydrolipoamide dehy 100.0 4.8E-38 1E-42 320.6 32.9 382 50-466 3-462 (466)
30 TIGR02053 MerA mercuric reduct 100.0 4.2E-38 9E-43 321.2 32.3 380 52-465 1-453 (463)
31 PRK13748 putative mercuric red 100.0 9.6E-38 2.1E-42 326.2 35.6 382 50-465 97-551 (561)
32 KOG1346 Programmed cell death 100.0 1.4E-39 3E-44 302.4 19.2 387 49-442 176-646 (659)
33 PRK07846 mycothione reductase; 100.0 8.8E-37 1.9E-41 308.9 36.8 376 51-463 1-449 (451)
34 PRK14727 putative mercuric red 100.0 9.4E-37 2E-41 311.5 37.0 383 49-464 14-468 (479)
35 PRK12779 putative bifunctional 100.0 1.8E-38 4E-43 342.1 25.4 319 2-357 239-624 (944)
36 PRK07251 pyridine nucleotide-d 100.0 1.1E-37 2.4E-42 315.8 29.2 375 50-460 2-436 (438)
37 TIGR01423 trypano_reduc trypan 100.0 2.3E-37 5E-42 314.2 31.3 376 50-460 2-471 (486)
38 PTZ00318 NADH dehydrogenase-li 100.0 8.9E-38 1.9E-42 314.4 27.1 290 49-370 8-358 (424)
39 PRK11749 dihydropyrimidine deh 100.0 1.5E-38 3.2E-43 323.3 21.1 318 3-357 80-449 (457)
40 PRK12810 gltD glutamate syntha 100.0 3.1E-38 6.8E-43 321.4 23.0 318 3-357 84-462 (471)
41 TIGR03385 CoA_CoA_reduc CoA-di 100.0 2.5E-36 5.3E-41 305.3 35.6 352 65-442 1-403 (427)
42 PRK06912 acoL dihydrolipoamide 100.0 1.2E-36 2.5E-41 309.5 33.1 380 53-465 2-453 (458)
43 TIGR01438 TGR thioredoxin and 100.0 5.7E-37 1.2E-41 312.1 30.7 379 51-462 2-470 (484)
44 TIGR01350 lipoamide_DH dihydro 100.0 2E-36 4.4E-41 309.0 34.1 384 51-466 1-457 (461)
45 TIGR03452 mycothione_red mycot 100.0 2.9E-36 6.2E-41 305.5 34.0 376 51-463 2-452 (452)
46 PRK12778 putative bifunctional 100.0 4.7E-38 1E-42 337.0 21.3 320 2-357 368-747 (752)
47 TIGR03315 Se_ygfK putative sel 100.0 6.7E-38 1.5E-42 333.9 22.1 313 2-358 476-838 (1012)
48 PRK06292 dihydrolipoamide dehy 100.0 1.5E-36 3.2E-41 309.9 30.2 379 50-466 2-456 (460)
49 PRK06327 dihydrolipoamide dehy 100.0 3.1E-36 6.6E-41 307.6 31.8 383 50-464 3-469 (475)
50 PTZ00153 lipoamide dehydrogena 100.0 3.4E-36 7.3E-41 312.3 32.3 301 135-464 249-654 (659)
51 PRK12775 putative trifunctiona 100.0 2.5E-37 5.4E-42 336.3 21.2 318 3-356 371-751 (1006)
52 TIGR01318 gltD_gamma_fam gluta 100.0 7.3E-37 1.6E-41 310.3 22.5 319 3-357 80-463 (467)
53 PTZ00052 thioredoxin reductase 100.0 6.2E-36 1.3E-40 306.0 29.3 377 51-461 5-479 (499)
54 PRK12814 putative NADPH-depend 100.0 5.8E-37 1.3E-41 322.3 19.9 318 2-356 133-497 (652)
55 TIGR03169 Nterm_to_SelD pyridi 100.0 8.7E-36 1.9E-40 295.3 26.4 276 53-357 1-308 (364)
56 PRK12769 putative oxidoreducta 100.0 3.5E-36 7.5E-41 317.8 23.7 319 3-357 266-649 (654)
57 KOG1335 Dihydrolipoamide dehyd 100.0 3.9E-35 8.4E-40 270.7 22.9 385 50-465 38-500 (506)
58 PRK13984 putative oxidoreducta 100.0 2E-35 4.4E-40 310.3 22.7 313 3-356 223-598 (604)
59 TIGR01317 GOGAT_sm_gam glutama 100.0 3.4E-35 7.5E-40 299.1 22.4 318 3-357 84-476 (485)
60 PRK12809 putative oxidoreducta 100.0 1.1E-34 2.4E-39 305.0 21.8 320 2-357 248-632 (639)
61 TIGR01292 TRX_reduct thioredox 100.0 2.8E-33 6.1E-38 270.1 26.2 272 52-356 1-297 (300)
62 PRK12771 putative glutamate sy 100.0 1.1E-33 2.3E-38 294.5 20.1 318 2-356 78-440 (564)
63 TIGR03140 AhpF alkyl hydropero 100.0 5.6E-33 1.2E-37 285.8 23.6 275 49-356 210-509 (515)
64 KOG0405 Pyridine nucleotide-di 100.0 5.1E-32 1.1E-36 247.1 22.4 357 49-438 18-448 (478)
65 PRK10262 thioredoxin reductase 100.0 5.6E-32 1.2E-36 263.2 23.0 257 49-328 4-292 (321)
66 PRK15317 alkyl hydroperoxide r 100.0 1E-31 2.3E-36 276.7 24.6 276 49-356 209-508 (517)
67 COG0492 TrxB Thioredoxin reduc 100.0 4.4E-32 9.5E-37 256.9 18.8 254 50-329 2-279 (305)
68 TIGR03143 AhpF_homolog putativ 100.0 4.2E-31 9E-36 273.9 25.8 272 50-355 3-304 (555)
69 COG0446 HcaD Uncharacterized N 100.0 1.1E-29 2.4E-34 256.2 31.6 305 54-377 1-328 (415)
70 PRK12770 putative glutamate sy 100.0 1.2E-29 2.7E-34 249.5 24.3 274 49-357 16-347 (352)
71 KOG2495 NADH-dehydrogenase (ub 100.0 9.1E-28 2E-32 225.8 18.0 278 47-356 51-393 (491)
72 PRK06567 putative bifunctional 100.0 2.5E-27 5.4E-32 248.5 19.8 270 2-293 309-733 (1028)
73 PLN02852 ferredoxin-NADP+ redu 99.9 1.3E-26 2.8E-31 232.7 21.4 260 48-330 23-401 (491)
74 TIGR01372 soxA sarcosine oxida 99.9 7.7E-26 1.7E-30 248.1 26.8 271 50-356 162-468 (985)
75 COG0493 GltD NADPH-dependent g 99.9 1.2E-26 2.5E-31 230.7 14.0 318 3-356 62-447 (457)
76 KOG0399 Glutamate synthase [Am 99.9 1.5E-26 3.3E-31 236.4 11.9 299 4-329 1727-2099(2142)
77 KOG4716 Thioredoxin reductase 99.9 7.6E-25 1.6E-29 199.6 21.0 197 154-368 151-377 (503)
78 COG3634 AhpF Alkyl hydroperoxi 99.9 2E-25 4.4E-30 204.0 12.1 259 49-330 209-494 (520)
79 KOG0404 Thioredoxin reductase 99.9 1E-24 2.2E-29 187.9 14.1 262 51-327 8-295 (322)
80 PLN02172 flavin-containing mon 99.9 5.3E-23 1.2E-27 207.5 20.6 280 49-360 8-353 (461)
81 KOG3851 Sulfide:quinone oxidor 99.9 8.5E-22 1.8E-26 178.5 12.0 283 47-356 35-357 (446)
82 PF07992 Pyr_redox_2: Pyridine 99.8 7.2E-23 1.6E-27 185.5 -0.4 188 53-328 1-200 (201)
83 KOG2755 Oxidoreductase [Genera 99.8 1.4E-20 3E-25 166.3 11.7 248 53-327 1-322 (334)
84 PF00743 FMO-like: Flavin-bind 99.8 5.5E-20 1.2E-24 188.0 18.0 279 52-359 2-396 (531)
85 COG1148 HdrA Heterodisulfide r 99.7 3E-16 6.4E-21 150.4 16.5 282 48-356 121-545 (622)
86 COG2072 TrkA Predicted flavopr 99.7 2E-15 4.3E-20 152.0 18.5 177 47-234 4-202 (443)
87 PF13738 Pyr_redox_3: Pyridine 99.7 4.2E-16 9.1E-21 141.4 10.2 170 55-234 1-194 (203)
88 PF13434 K_oxygenase: L-lysine 99.6 2.1E-15 4.5E-20 146.5 14.4 228 51-287 2-340 (341)
89 KOG1800 Ferredoxin/adrenodoxin 99.6 4.4E-15 9.6E-20 138.5 13.8 157 48-228 17-180 (468)
90 COG3486 IucD Lysine/ornithine 99.6 7.8E-14 1.7E-18 132.1 21.9 273 48-326 2-387 (436)
91 KOG1399 Flavin-containing mono 99.6 1.1E-14 2.4E-19 144.6 16.6 235 48-297 3-278 (448)
92 PTZ00188 adrenodoxin reductase 99.6 1.2E-14 2.7E-19 144.0 16.0 270 49-355 37-439 (506)
93 COG4529 Uncharacterized protei 99.5 2.1E-12 4.6E-17 125.9 20.6 296 51-356 1-459 (474)
94 PRK05329 anaerobic glycerol-3- 99.5 8.8E-13 1.9E-17 131.1 15.1 142 211-357 219-418 (422)
95 PRK09897 hypothetical protein; 99.3 2E-10 4.2E-15 117.6 20.6 170 51-229 1-213 (534)
96 COG2081 Predicted flavoprotein 99.1 1.2E-10 2.5E-15 111.1 8.7 120 49-173 1-166 (408)
97 TIGR03378 glycerol3P_GlpB glyc 99.0 3.4E-08 7.3E-13 97.4 17.9 116 235-355 268-418 (419)
98 PF14759 Reductase_C: Reductas 98.9 7.6E-09 1.6E-13 79.1 9.7 79 368-454 1-82 (85)
99 PF00070 Pyr_redox: Pyridine n 98.9 4.2E-09 9E-14 79.9 7.9 62 209-272 1-80 (80)
100 COG0579 Predicted dehydrogenas 98.9 8.7E-09 1.9E-13 101.5 10.8 209 49-300 1-222 (429)
101 PF03486 HI0933_like: HI0933-l 98.9 1.5E-09 3.3E-14 107.8 4.8 120 52-174 1-166 (409)
102 PRK06847 hypothetical protein; 98.8 3E-08 6.6E-13 98.7 10.3 123 50-175 3-164 (375)
103 COG0029 NadB Aspartate oxidase 98.8 2.8E-08 6.2E-13 97.2 9.7 56 302-358 341-396 (518)
104 COG3075 GlpB Anaerobic glycero 98.7 1.1E-07 2.4E-12 88.0 11.9 118 235-357 263-415 (421)
105 PLN02463 lycopene beta cyclase 98.7 5.5E-08 1.2E-12 98.1 9.7 126 46-175 23-170 (447)
106 TIGR02032 GG-red-SF geranylger 98.7 7.5E-08 1.6E-12 92.3 10.1 120 52-174 1-148 (295)
107 PRK06834 hypothetical protein; 98.7 1.1E-07 2.3E-12 97.7 11.4 123 50-175 2-157 (488)
108 TIGR00551 nadB L-aspartate oxi 98.7 1.4E-06 3.1E-11 89.7 19.4 55 302-357 333-387 (488)
109 COG0644 FixC Dehydrogenases (f 98.7 1E-07 2.3E-12 95.4 10.6 123 49-174 1-152 (396)
110 PRK10015 oxidoreductase; Provi 98.7 8.1E-08 1.7E-12 97.1 9.5 123 49-174 3-164 (429)
111 PRK10157 putative oxidoreducta 98.7 1.1E-07 2.4E-12 96.2 10.5 123 49-174 3-164 (428)
112 PRK07190 hypothetical protein; 98.6 1.4E-07 3E-12 96.8 10.4 123 49-174 3-165 (487)
113 PRK04176 ribulose-1,5-biphosph 98.6 5.3E-08 1.2E-12 91.1 6.1 120 49-173 23-172 (257)
114 PF13454 NAD_binding_9: FAD-NA 98.6 5.3E-07 1.1E-11 77.8 11.4 117 55-172 1-155 (156)
115 PRK06184 hypothetical protein; 98.6 2.3E-07 4.9E-12 96.1 10.8 122 50-174 2-168 (502)
116 PF01266 DAO: FAD dependent ox 98.6 2.8E-07 6E-12 90.8 10.7 61 235-298 152-212 (358)
117 PRK08773 2-octaprenyl-3-methyl 98.6 2E-07 4.4E-12 93.4 9.7 124 48-174 3-169 (392)
118 TIGR00292 thiazole biosynthesi 98.6 1.6E-07 3.6E-12 87.5 8.0 122 49-173 19-169 (254)
119 PRK07333 2-octaprenyl-6-methox 98.6 2.6E-07 5.6E-12 93.0 9.9 124 51-175 1-168 (403)
120 PRK12842 putative succinate de 98.6 2.5E-07 5.5E-12 97.1 9.8 85 204-289 154-276 (574)
121 PRK08071 L-aspartate oxidase; 98.5 1.4E-06 3.1E-11 90.0 14.7 55 302-357 332-386 (510)
122 TIGR01790 carotene-cycl lycope 98.5 2.9E-07 6.3E-12 92.1 8.8 118 53-174 1-141 (388)
123 PRK09077 L-aspartate oxidase; 98.5 1E-05 2.2E-10 84.3 20.0 55 302-357 353-407 (536)
124 PRK09126 hypothetical protein; 98.5 7.5E-07 1.6E-11 89.3 11.2 123 50-175 2-168 (392)
125 PRK07045 putative monooxygenas 98.5 2.7E-06 5.8E-11 85.2 15.0 48 242-289 119-166 (388)
126 PRK08020 ubiF 2-octaprenyl-3-m 98.5 5.1E-07 1.1E-11 90.5 9.8 123 49-174 3-169 (391)
127 PRK07236 hypothetical protein; 98.5 3.4E-07 7.4E-12 91.6 8.3 123 49-174 4-154 (386)
128 PRK07494 2-octaprenyl-6-methox 98.5 1E-06 2.3E-11 88.1 11.8 40 47-89 3-42 (388)
129 COG0654 UbiH 2-polyprenyl-6-me 98.5 2.5E-06 5.4E-11 85.3 14.3 51 237-289 111-163 (387)
130 PRK13977 myosin-cross-reactive 98.5 1E-06 2.2E-11 89.8 11.4 73 216-288 191-293 (576)
131 TIGR03385 CoA_CoA_reduc CoA-di 98.5 5.9E-07 1.3E-11 91.1 9.7 98 51-175 137-234 (427)
132 PRK08244 hypothetical protein; 98.5 6.4E-07 1.4E-11 92.6 10.0 121 51-174 2-159 (493)
133 PRK07251 pyridine nucleotide-d 98.5 5.8E-07 1.2E-11 91.5 9.3 98 50-175 156-254 (438)
134 PF00070 Pyr_redox: Pyridine n 98.5 2.1E-07 4.6E-12 70.4 4.5 78 53-158 1-80 (80)
135 PLN02697 lycopene epsilon cycl 98.4 6E-07 1.3E-11 92.2 8.9 119 50-174 107-248 (529)
136 KOG2415 Electron transfer flav 98.4 1.8E-06 4E-11 82.4 11.3 64 235-298 188-268 (621)
137 PRK07608 ubiquinone biosynthes 98.4 7.3E-07 1.6E-11 89.3 9.0 37 50-89 4-40 (388)
138 PRK11728 hydroxyglutarate oxid 98.4 1.5E-06 3.2E-11 87.2 10.6 60 235-298 154-213 (393)
139 PRK08849 2-octaprenyl-3-methyl 98.4 2.1E-06 4.6E-11 85.8 11.6 122 51-175 3-168 (384)
140 PRK05714 2-octaprenyl-3-methyl 98.4 6.6E-07 1.4E-11 90.1 8.1 121 51-174 2-168 (405)
141 PRK08013 oxidoreductase; Provi 98.4 1.5E-06 3.2E-11 87.4 10.4 122 50-174 2-168 (400)
142 PF04820 Trp_halogenase: Trypt 98.4 4.4E-07 9.5E-12 92.2 6.3 54 235-289 159-212 (454)
143 PRK05868 hypothetical protein; 98.4 1.5E-06 3.2E-11 86.4 9.8 121 51-174 1-160 (372)
144 PF05834 Lycopene_cycl: Lycope 98.4 1.3E-06 2.8E-11 86.8 9.4 119 53-174 1-142 (374)
145 PRK08163 salicylate hydroxylas 98.4 1.1E-06 2.4E-11 88.2 8.9 123 50-175 3-167 (396)
146 PRK06912 acoL dihydrolipoamide 98.4 1.1E-06 2.5E-11 89.8 8.9 97 51-175 170-269 (458)
147 PRK06126 hypothetical protein; 98.4 1.8E-06 3.9E-11 90.4 10.3 39 47-88 3-41 (545)
148 PRK04965 NADH:flavorubredoxin 98.4 1.5E-06 3.3E-11 86.5 9.3 99 50-175 140-240 (377)
149 PRK07512 L-aspartate oxidase; 98.4 1.1E-05 2.4E-10 83.4 15.9 55 302-357 341-395 (513)
150 PRK06183 mhpA 3-(3-hydroxyphen 98.4 2.4E-06 5.3E-11 89.2 11.0 37 49-88 8-44 (538)
151 TIGR01350 lipoamide_DH dihydro 98.4 1.5E-06 3.2E-11 89.2 9.2 97 51-175 170-270 (461)
152 PRK09754 phenylpropionate diox 98.3 1.3E-06 2.8E-11 87.7 8.5 98 51-175 144-242 (396)
153 COG2081 Predicted flavoprotein 98.3 3.8E-06 8.2E-11 80.7 11.1 91 208-300 4-188 (408)
154 PRK07364 2-octaprenyl-6-methox 98.3 1.5E-06 3.4E-11 87.7 8.9 37 50-89 17-53 (415)
155 PRK06416 dihydrolipoamide dehy 98.3 1.4E-06 2.9E-11 89.4 8.6 98 51-176 172-274 (462)
156 PRK05192 tRNA uridine 5-carbox 98.3 9.4E-07 2E-11 91.0 7.1 36 49-87 2-37 (618)
157 PRK05976 dihydrolipoamide dehy 98.3 1.9E-06 4.1E-11 88.5 9.2 97 51-175 180-282 (472)
158 PRK14694 putative mercuric red 98.3 2.3E-06 5E-11 87.7 9.9 96 51-176 178-275 (468)
159 COG1232 HemY Protoporphyrinoge 98.3 2.3E-06 5E-11 85.2 9.2 37 53-90 2-38 (444)
160 PRK11445 putative oxidoreducta 98.3 2.9E-06 6.2E-11 83.7 9.9 120 51-174 1-157 (351)
161 PRK06185 hypothetical protein; 98.3 2.7E-06 5.8E-11 85.8 9.9 38 48-88 3-40 (407)
162 PRK05732 2-octaprenyl-6-methox 98.3 4.4E-06 9.6E-11 83.8 11.4 42 133-174 126-169 (395)
163 COG1249 Lpd Pyruvate/2-oxoglut 98.3 2.5E-06 5.4E-11 85.7 9.3 99 49-175 171-273 (454)
164 PRK07588 hypothetical protein; 98.3 4.3E-06 9.3E-11 83.8 11.1 120 53-175 2-159 (391)
165 COG1233 Phytoene dehydrogenase 98.3 1.4E-06 3.1E-11 89.4 7.7 51 235-286 229-279 (487)
166 PRK13512 coenzyme A disulfide 98.3 2.4E-06 5.1E-11 86.9 9.1 95 51-175 148-242 (438)
167 TIGR01424 gluta_reduc_2 glutat 98.3 2.2E-06 4.9E-11 87.3 8.9 97 51-175 166-264 (446)
168 TIGR02734 crtI_fam phytoene de 98.3 2.1E-06 4.6E-11 89.0 8.7 52 235-287 224-275 (502)
169 PRK08850 2-octaprenyl-6-methox 98.3 2.6E-06 5.6E-11 85.8 9.1 42 133-174 125-168 (405)
170 PRK06134 putative FAD-binding 98.3 7.4E-06 1.6E-10 86.1 12.8 54 235-289 222-279 (581)
171 PRK06116 glutathione reductase 98.3 2.6E-06 5.7E-11 86.9 9.1 98 51-176 167-267 (450)
172 TIGR01988 Ubi-OHases Ubiquinon 98.3 2.6E-06 5.5E-11 85.1 8.8 119 53-174 1-163 (385)
173 TIGR01984 UbiH 2-polyprenyl-6- 98.3 2.3E-06 5E-11 85.4 8.5 119 53-174 1-162 (382)
174 COG3380 Predicted NAD/FAD-depe 98.3 3E-06 6.4E-11 76.8 8.0 35 52-89 2-36 (331)
175 PRK06753 hypothetical protein; 98.3 4.8E-06 1E-10 82.9 10.6 116 53-174 2-152 (373)
176 PRK05249 soluble pyridine nucl 98.3 3.1E-06 6.7E-11 86.8 9.3 98 50-175 174-273 (461)
177 TIGR01789 lycopene_cycl lycope 98.3 3.9E-06 8.5E-11 83.1 9.7 114 53-174 1-138 (370)
178 PLN00093 geranylgeranyl diphos 98.3 4.1E-06 9E-11 85.0 9.9 40 46-88 34-73 (450)
179 TIGR02731 phytoene_desat phyto 98.3 6E-06 1.3E-10 84.4 11.2 52 235-286 218-274 (453)
180 PRK07843 3-ketosteroid-delta-1 98.3 6.7E-07 1.5E-11 93.4 4.3 89 206-295 159-277 (557)
181 PRK07846 mycothione reductase; 98.3 3.5E-06 7.7E-11 85.8 9.4 96 51-175 166-263 (451)
182 PRK08132 FAD-dependent oxidore 98.3 3.9E-06 8.5E-11 87.8 9.9 37 49-88 21-57 (547)
183 PRK06370 mercuric reductase; V 98.2 4.3E-06 9.2E-11 85.7 9.5 98 51-176 171-273 (463)
184 TIGR02023 BchP-ChlP geranylger 98.2 3.9E-06 8.5E-11 83.9 9.0 32 52-86 1-32 (388)
185 PTZ00363 rab-GDP dissociation 98.2 3.8E-05 8.3E-10 77.4 16.0 55 235-289 237-291 (443)
186 TIGR01989 COQ6 Ubiquinone bios 98.2 3.4E-06 7.3E-11 85.8 8.6 41 134-174 134-183 (437)
187 TIGR03169 Nterm_to_SelD pyridi 98.2 5.5E-06 1.2E-10 82.2 9.8 96 51-175 145-244 (364)
188 PRK07818 dihydrolipoamide dehy 98.2 4.4E-06 9.5E-11 85.7 9.3 97 51-175 172-274 (466)
189 PLN02612 phytoene desaturase 98.2 1.8E-05 3.8E-10 82.9 13.8 52 235-286 313-364 (567)
190 COG1252 Ndh NADH dehydrogenase 98.2 2E-06 4.4E-11 84.4 6.2 98 51-175 155-263 (405)
191 TIGR01421 gluta_reduc_1 glutat 98.2 4.5E-06 9.7E-11 85.1 9.1 98 51-176 166-267 (450)
192 PRK06996 hypothetical protein; 98.2 4.2E-06 9E-11 84.1 8.6 126 47-172 7-172 (398)
193 TIGR02053 MerA mercuric reduct 98.2 4.4E-06 9.4E-11 85.7 8.9 98 51-176 166-268 (463)
194 PRK07845 flavoprotein disulfid 98.2 5E-06 1.1E-10 85.2 9.2 98 51-176 177-276 (466)
195 PRK12409 D-amino acid dehydrog 98.2 2E-05 4.4E-10 79.5 13.5 35 52-89 2-36 (410)
196 PTZ00383 malate:quinone oxidor 98.2 1.4E-06 3E-11 89.0 4.9 59 238-299 219-283 (497)
197 PRK06327 dihydrolipoamide dehy 98.2 5.2E-06 1.1E-10 85.3 8.9 98 50-175 182-285 (475)
198 TIGR02374 nitri_red_nirB nitri 98.2 4.9E-06 1.1E-10 90.4 9.1 99 50-175 139-239 (785)
199 PF01494 FAD_binding_3: FAD bi 98.2 5.8E-07 1.3E-11 88.4 1.7 35 52-89 2-36 (356)
200 PRK08401 L-aspartate oxidase; 98.2 8.3E-06 1.8E-10 83.5 10.0 34 51-87 1-34 (466)
201 PRK01747 mnmC bifunctional tRN 98.2 2.2E-05 4.7E-10 84.1 13.6 50 237-289 415-464 (662)
202 PRK08243 4-hydroxybenzoate 3-m 98.2 7E-06 1.5E-10 82.3 9.0 35 51-88 2-36 (392)
203 PLN02507 glutathione reductase 98.2 7E-06 1.5E-10 84.6 9.1 98 51-176 203-302 (499)
204 PTZ00318 NADH dehydrogenase-li 98.2 7.8E-06 1.7E-10 82.7 9.3 97 52-175 174-281 (424)
205 PF12831 FAD_oxidored: FAD dep 98.2 1.4E-06 3E-11 88.2 3.7 117 53-172 1-148 (428)
206 PRK14989 nitrite reductase sub 98.1 6.3E-06 1.4E-10 89.6 9.0 100 50-176 144-247 (847)
207 TIGR01292 TRX_reduct thioredox 98.1 1.2E-05 2.7E-10 77.1 10.2 82 209-293 2-117 (300)
208 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 5.9E-06 1.3E-10 82.7 8.1 35 51-88 2-36 (390)
209 TIGR01373 soxB sarcosine oxida 98.1 2.1E-05 4.6E-10 79.2 12.2 52 236-288 189-240 (407)
210 PRK06617 2-octaprenyl-6-methox 98.1 6.1E-06 1.3E-10 82.1 8.1 34 51-87 1-34 (374)
211 TIGR03219 salicylate_mono sali 98.1 2E-05 4.4E-10 79.6 11.7 41 134-174 117-159 (414)
212 PRK06115 dihydrolipoamide dehy 98.1 8.8E-06 1.9E-10 83.4 9.1 98 50-175 173-277 (466)
213 TIGR03452 mycothione_red mycot 98.1 1E-05 2.2E-10 82.5 9.5 97 51-176 169-267 (452)
214 PTZ00052 thioredoxin reductase 98.1 1.1E-05 2.3E-10 83.3 9.7 96 51-175 182-279 (499)
215 PLN02661 Putative thiazole syn 98.1 8.3E-06 1.8E-10 78.5 8.1 38 49-89 90-128 (357)
216 PRK06175 L-aspartate oxidase; 98.1 1E-05 2.2E-10 81.9 9.2 54 302-356 331-384 (433)
217 COG0446 HcaD Uncharacterized N 98.1 8.9E-06 1.9E-10 81.9 8.8 98 51-175 136-238 (415)
218 PF13738 Pyr_redox_3: Pyridine 98.1 1.7E-05 3.7E-10 71.6 9.7 79 211-291 1-143 (203)
219 PRK07233 hypothetical protein; 98.1 5.6E-06 1.2E-10 84.1 7.3 51 235-287 203-253 (434)
220 PRK06481 fumarate reductase fl 98.1 2E-05 4.3E-10 81.5 11.3 37 50-89 60-96 (506)
221 PRK09564 coenzyme A disulfide 98.1 1.1E-05 2.4E-10 82.2 9.3 97 51-175 149-247 (444)
222 TIGR00275 flavoprotein, HI0933 98.1 5.2E-06 1.1E-10 83.2 6.6 46 128-174 113-160 (400)
223 PF03486 HI0933_like: HI0933-l 98.1 1.2E-05 2.5E-10 80.3 8.9 79 209-288 2-166 (409)
224 TIGR03364 HpnW_proposed FAD de 98.1 1.4E-05 3E-10 79.3 9.5 39 133-174 159-197 (365)
225 PF01134 GIDA: Glucose inhibit 98.1 2.3E-06 5E-11 83.6 3.8 39 133-172 109-150 (392)
226 PRK08010 pyridine nucleotide-d 98.1 1.2E-05 2.5E-10 82.0 9.1 98 50-176 157-256 (441)
227 PRK13748 putative mercuric red 98.1 1.2E-05 2.6E-10 84.6 9.4 96 51-176 270-367 (561)
228 TIGR02028 ChlP geranylgeranyl 98.1 1.5E-05 3.2E-10 80.0 9.6 34 52-88 1-34 (398)
229 TIGR01423 trypano_reduc trypan 98.1 1.1E-05 2.4E-10 82.7 8.7 101 50-175 186-289 (486)
230 PF01134 GIDA: Glucose inhibit 98.1 1.8E-05 3.9E-10 77.4 9.4 76 209-286 1-150 (392)
231 TIGR01438 TGR thioredoxin and 98.1 1.6E-05 3.5E-10 81.7 9.5 96 51-175 180-280 (484)
232 PRK06475 salicylate hydroxylas 98.1 1.6E-05 3.4E-10 80.0 9.2 35 52-89 3-37 (400)
233 PRK14727 putative mercuric red 98.1 1.6E-05 3.4E-10 81.8 9.3 96 51-176 188-285 (479)
234 PRK05945 sdhA succinate dehydr 98.0 1.4E-05 3E-10 84.0 8.9 38 50-88 2-39 (575)
235 PRK13339 malate:quinone oxidor 98.0 0.00011 2.4E-09 75.0 15.1 44 49-93 4-47 (497)
236 TIGR00292 thiazole biosynthesi 98.0 0.00016 3.4E-09 67.6 14.1 147 207-357 21-251 (254)
237 PRK06292 dihydrolipoamide dehy 98.0 2E-05 4.4E-10 80.7 8.9 98 50-176 168-270 (460)
238 PRK00711 D-amino acid dehydrog 98.0 6.8E-05 1.5E-09 75.8 12.5 51 236-288 207-257 (416)
239 PTZ00058 glutathione reductase 98.0 2.3E-05 5.1E-10 81.4 9.2 97 51-175 237-337 (561)
240 PF13450 NAD_binding_8: NAD(P) 98.0 9.5E-06 2.1E-10 59.0 4.3 32 56-90 1-32 (68)
241 TIGR00136 gidA glucose-inhibit 98.0 2.2E-05 4.9E-10 80.9 8.3 34 52-88 1-34 (617)
242 COG2509 Uncharacterized FAD-de 98.0 0.00021 4.4E-09 69.9 14.2 54 235-289 178-231 (486)
243 PRK06467 dihydrolipoamide dehy 97.9 3E-05 6.6E-10 79.5 8.6 97 51-176 174-276 (471)
244 PRK04176 ribulose-1,5-biphosph 97.9 0.00018 3.9E-09 67.4 13.0 83 207-289 25-174 (257)
245 PRK11101 glpA sn-glycerol-3-ph 97.9 2.6E-05 5.6E-10 81.4 8.2 36 49-87 4-39 (546)
246 TIGR03140 AhpF alkyl hydropero 97.9 5.8E-05 1.3E-09 78.3 10.7 83 206-290 211-325 (515)
247 KOG1336 Monodehydroascorbate/f 97.9 2.8E-05 6.2E-10 76.2 7.6 99 51-176 213-315 (478)
248 PRK06847 hypothetical protein; 97.9 6.9E-05 1.5E-09 74.6 10.7 82 207-290 4-165 (375)
249 PRK10262 thioredoxin reductase 97.9 3.4E-05 7.4E-10 75.1 8.1 97 50-176 145-250 (321)
250 TIGR01813 flavo_cyto_c flavocy 97.9 7.5E-05 1.6E-09 76.0 10.5 34 53-89 1-35 (439)
251 PRK07804 L-aspartate oxidase; 97.9 5.4E-05 1.2E-09 78.9 9.4 38 48-88 13-50 (541)
252 PRK08294 phenol 2-monooxygenas 97.9 7.9E-05 1.7E-09 79.0 10.6 37 49-88 30-67 (634)
253 PRK06069 sdhA succinate dehydr 97.9 4.2E-05 9.2E-10 80.4 8.5 40 49-88 3-42 (577)
254 COG1635 THI4 Ribulose 1,5-bisp 97.9 1.4E-05 3E-10 70.4 3.9 37 51-90 30-66 (262)
255 PTZ00153 lipoamide dehydrogena 97.9 3.7E-05 8.1E-10 81.1 7.9 97 51-175 312-428 (659)
256 PRK15317 alkyl hydroperoxide r 97.8 9.1E-05 2E-09 76.9 10.6 82 207-290 211-324 (517)
257 PRK09078 sdhA succinate dehydr 97.8 5.8E-05 1.3E-09 79.6 9.2 35 50-87 11-45 (598)
258 PRK07538 hypothetical protein; 97.8 5.4E-05 1.2E-09 76.5 8.5 33 53-88 2-34 (413)
259 PRK08205 sdhA succinate dehydr 97.8 7.2E-05 1.6E-09 78.7 9.5 34 50-87 4-37 (583)
260 PLN02546 glutathione reductase 97.8 5.8E-05 1.2E-09 78.6 8.7 99 50-176 251-352 (558)
261 PRK06452 sdhA succinate dehydr 97.8 7E-05 1.5E-09 78.5 9.3 35 50-87 4-38 (566)
262 PF01946 Thi4: Thi4 family; PD 97.8 1.6E-05 3.6E-10 70.3 3.8 38 50-90 16-53 (230)
263 PF07992 Pyr_redox_2: Pyridine 97.8 3.5E-05 7.7E-10 69.3 6.2 87 209-295 1-129 (201)
264 KOG2495 NADH-dehydrogenase (ub 97.8 5.8E-06 1.3E-10 79.6 1.0 100 51-175 218-330 (491)
265 PRK07057 sdhA succinate dehydr 97.8 8.1E-05 1.7E-09 78.4 9.6 36 49-87 10-45 (591)
266 TIGR01812 sdhA_frdA_Gneg succi 97.8 5.9E-05 1.3E-09 79.3 8.6 33 53-88 1-33 (566)
267 PRK07573 sdhA succinate dehydr 97.8 0.00012 2.7E-09 77.6 10.7 35 50-87 34-68 (640)
268 PRK09231 fumarate reductase fl 97.8 7.7E-05 1.7E-09 78.4 9.0 38 50-88 3-40 (582)
269 KOG2820 FAD-dependent oxidored 97.8 4.2E-05 9.1E-10 71.6 6.0 48 128-175 161-213 (399)
270 COG2907 Predicted NAD/FAD-bind 97.8 0.00018 3.9E-09 67.7 9.9 39 50-92 7-45 (447)
271 TIGR01176 fum_red_Fp fumarate 97.8 9E-05 2E-09 77.8 8.9 37 51-88 3-39 (580)
272 KOG0029 Amine oxidase [Seconda 97.7 4.2E-05 9E-10 78.1 5.5 43 46-91 10-52 (501)
273 PRK11749 dihydropyrimidine deh 97.6 0.00026 5.7E-09 72.4 9.9 95 50-175 272-388 (457)
274 PRK07395 L-aspartate oxidase; 97.6 0.00013 2.7E-09 76.2 7.3 54 302-356 347-400 (553)
275 PRK07208 hypothetical protein; 97.6 7.8E-05 1.7E-09 76.8 5.6 40 49-91 2-41 (479)
276 PRK06834 hypothetical protein; 97.6 0.00038 8.3E-09 71.6 10.5 81 208-290 4-158 (488)
277 PRK12770 putative glutamate sy 97.6 0.00042 9.1E-09 68.4 10.1 94 51-175 172-287 (352)
278 PRK08773 2-octaprenyl-3-methyl 97.6 0.00042 9.1E-09 69.5 10.1 50 238-289 121-170 (392)
279 PRK12810 gltD glutamate syntha 97.6 0.00069 1.5E-08 69.6 11.8 105 50-175 280-401 (471)
280 PF06039 Mqo: Malate:quinone o 97.5 5.7E-05 1.2E-09 74.3 3.1 90 226-316 171-274 (488)
281 PRK08244 hypothetical protein; 97.5 0.0005 1.1E-08 71.1 10.3 82 208-289 3-160 (493)
282 COG0445 GidA Flavin-dependent 97.5 7.9E-05 1.7E-09 74.3 4.0 35 50-87 3-37 (621)
283 COG0578 GlpA Glycerol-3-phosph 97.5 0.00025 5.5E-09 71.9 7.6 40 49-91 10-49 (532)
284 PLN02172 flavin-containing mon 97.5 0.0029 6.3E-08 64.5 15.3 114 206-323 9-212 (461)
285 PRK07236 hypothetical protein; 97.5 0.00067 1.5E-08 67.8 10.7 81 207-289 6-155 (386)
286 PLN02463 lycopene beta cyclase 97.5 0.00064 1.4E-08 68.9 10.4 79 208-289 29-170 (447)
287 PRK08255 salicylyl-CoA 5-hydro 97.5 6.8E-05 1.5E-09 81.4 3.6 35 53-88 2-36 (765)
288 KOG2665 Predicted FAD-dependen 97.5 0.00037 8.1E-09 64.7 7.7 43 48-91 45-87 (453)
289 PRK09126 hypothetical protein; 97.5 0.00053 1.2E-08 68.7 9.7 47 242-290 123-169 (392)
290 COG0492 TrxB Thioredoxin reduc 97.5 0.0022 4.8E-08 61.4 13.3 79 208-290 4-117 (305)
291 TIGR01316 gltA glutamate synth 97.5 0.0007 1.5E-08 69.0 10.5 94 50-175 271-388 (449)
292 PRK05868 hypothetical protein; 97.5 0.00076 1.7E-08 67.0 10.5 81 208-290 2-162 (372)
293 PRK10157 putative oxidoreducta 97.5 0.00092 2E-08 67.7 11.0 88 208-299 6-173 (428)
294 PRK01438 murD UDP-N-acetylmura 97.4 0.00025 5.4E-09 73.1 6.8 77 50-175 15-91 (480)
295 PRK11883 protoporphyrinogen ox 97.4 0.00015 3.3E-09 74.1 5.1 39 52-91 1-39 (451)
296 PRK08163 salicylate hydroxylas 97.4 0.00089 1.9E-08 67.2 10.4 82 207-290 4-168 (396)
297 PRK07588 hypothetical protein; 97.4 0.00079 1.7E-08 67.4 9.9 46 243-290 115-160 (391)
298 PRK07333 2-octaprenyl-6-methox 97.4 0.00082 1.8E-08 67.6 10.0 59 237-299 118-176 (403)
299 PLN02529 lysine-specific histo 97.4 9.8E-05 2.1E-09 78.6 3.4 53 29-90 144-196 (738)
300 TIGR02032 GG-red-SF geranylger 97.4 0.001 2.2E-08 63.5 10.2 78 209-288 2-148 (295)
301 PRK11259 solA N-methyltryptoph 97.4 0.00017 3.7E-09 71.8 4.8 50 237-289 156-205 (376)
302 PRK12779 putative bifunctional 97.4 0.00034 7.4E-09 77.2 7.3 74 206-289 305-406 (944)
303 KOG1335 Dihydrolipoamide dehyd 97.4 0.00038 8.2E-09 66.4 6.3 99 49-175 209-315 (506)
304 PLN02568 polyamine oxidase 97.4 0.00025 5.5E-09 73.6 5.6 45 47-91 1-47 (539)
305 COG0493 GltD NADPH-dependent g 97.4 0.00023 5E-09 71.8 5.2 103 157-287 90-219 (457)
306 PRK09853 putative selenate red 97.3 0.00062 1.3E-08 74.5 8.5 72 206-289 538-636 (1019)
307 PRK07190 hypothetical protein; 97.3 0.0012 2.6E-08 67.9 10.3 79 208-288 6-165 (487)
308 PLN02268 probable polyamine ox 97.3 0.00024 5.1E-09 72.3 5.1 38 52-92 1-38 (435)
309 PRK06184 hypothetical protein; 97.3 0.0012 2.7E-08 68.4 10.4 79 208-288 4-168 (502)
310 PLN02785 Protein HOTHEAD 97.3 0.0037 8.1E-08 65.6 13.9 36 49-88 53-88 (587)
311 PLN02985 squalene monooxygenas 97.3 0.0003 6.6E-09 72.7 5.7 39 47-88 39-77 (514)
312 PRK05335 tRNA (uracil-5-)-meth 97.3 0.00027 5.9E-09 70.0 5.0 35 51-88 2-36 (436)
313 PRK01438 murD UDP-N-acetylmura 97.3 0.00051 1.1E-08 70.8 7.2 71 206-294 15-96 (480)
314 PF00743 FMO-like: Flavin-bind 97.3 0.0018 3.8E-08 67.1 11.1 118 207-324 1-192 (531)
315 PRK05192 tRNA uridine 5-carbox 97.3 0.0011 2.5E-08 68.7 9.6 77 208-286 5-155 (618)
316 PRK12831 putative oxidoreducta 97.3 0.0014 3E-08 67.1 10.3 94 50-175 280-397 (464)
317 PRK05714 2-octaprenyl-3-methyl 97.3 0.0014 3.1E-08 65.9 10.2 49 239-289 121-169 (405)
318 PRK06753 hypothetical protein; 97.3 0.0015 3.3E-08 64.9 10.2 79 209-289 2-153 (373)
319 PLN02576 protoporphyrinogen ox 97.3 0.00034 7.4E-09 72.5 5.7 39 49-90 10-49 (496)
320 TIGR00562 proto_IX_ox protopor 97.3 0.00029 6.2E-09 72.3 5.1 37 51-90 2-42 (462)
321 KOG0685 Flavin-containing amin 97.3 0.00034 7.4E-09 68.7 5.2 41 49-91 19-59 (498)
322 TIGR01984 UbiH 2-polyprenyl-6- 97.3 0.0014 3E-08 65.4 9.8 44 243-288 119-162 (382)
323 PF01494 FAD_binding_3: FAD bi 97.3 0.0012 2.6E-08 64.8 9.2 81 209-289 3-173 (356)
324 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.00035 7.6E-09 68.9 5.2 37 51-90 1-37 (377)
325 PRK13369 glycerol-3-phosphate 97.3 0.00036 7.7E-09 72.3 5.5 38 48-88 3-40 (502)
326 KOG4254 Phytoene desaturase [C 97.3 0.00045 9.8E-09 67.2 5.7 50 235-285 269-318 (561)
327 PRK12416 protoporphyrinogen ox 97.2 0.00036 7.9E-09 71.6 5.3 41 51-91 1-44 (463)
328 COG0644 FixC Dehydrogenases (f 97.2 0.002 4.3E-08 64.7 10.4 88 209-299 5-161 (396)
329 PRK12266 glpD glycerol-3-phosp 97.2 0.00038 8.3E-09 72.1 5.4 37 49-88 4-40 (508)
330 PRK08274 tricarballylate dehyd 97.2 0.00037 7.9E-09 71.6 5.1 37 49-88 2-38 (466)
331 PRK08132 FAD-dependent oxidore 97.2 0.0021 4.5E-08 67.4 10.8 83 207-289 23-186 (547)
332 COG3349 Uncharacterized conser 97.2 0.00037 8E-09 69.6 4.8 37 52-91 1-37 (485)
333 COG0665 DadA Glycine/D-amino a 97.2 0.00038 8.3E-09 69.5 5.1 38 49-89 2-39 (387)
334 COG2072 TrkA Predicted flavopr 97.2 0.0082 1.8E-07 61.0 14.5 118 206-325 7-185 (443)
335 PLN02697 lycopene epsilon cycl 97.2 0.0021 4.5E-08 66.4 10.2 79 208-288 109-248 (529)
336 TIGR01988 Ubi-OHases Ubiquinon 97.2 0.002 4.3E-08 64.2 10.0 49 239-289 115-164 (385)
337 PRK08849 2-octaprenyl-3-methyl 97.2 0.0017 3.7E-08 64.9 9.4 46 243-290 124-169 (384)
338 TIGR03143 AhpF_homolog putativ 97.2 0.0019 4.2E-08 67.6 10.1 80 208-291 5-117 (555)
339 TIGR01377 soxA_mon sarcosine o 97.2 0.00039 8.5E-09 69.3 4.7 58 236-297 151-208 (380)
340 TIGR00136 gidA glucose-inhibit 97.2 0.0022 4.9E-08 66.4 10.2 44 244-288 111-154 (617)
341 PF14721 AIF_C: Apoptosis-indu 97.2 0.0014 3.1E-08 52.1 6.6 31 405-436 101-131 (133)
342 PTZ00367 squalene epoxidase; P 97.2 0.0005 1.1E-08 71.6 5.3 36 49-87 31-66 (567)
343 PLN02927 antheraxanthin epoxid 97.2 0.00046 9.9E-09 72.7 5.0 36 49-87 79-114 (668)
344 TIGR02733 desat_CrtD C-3',4' d 97.2 0.00049 1.1E-08 71.2 5.2 52 235-287 237-293 (492)
345 PLN02661 Putative thiazole syn 97.1 0.0058 1.3E-07 59.2 11.9 81 207-288 92-244 (357)
346 PRK08013 oxidoreductase; Provi 97.1 0.0024 5.3E-08 64.1 9.8 45 243-289 125-169 (400)
347 PRK08020 ubiF 2-octaprenyl-3-m 97.1 0.0028 6.1E-08 63.4 10.2 44 244-289 127-170 (391)
348 PRK07364 2-octaprenyl-6-methox 97.1 0.0026 5.6E-08 64.3 9.8 82 207-290 18-183 (415)
349 PRK08850 2-octaprenyl-6-methox 97.1 0.0023 5.1E-08 64.4 9.4 45 243-289 125-169 (405)
350 PRK07608 ubiquinone biosynthes 97.1 0.003 6.5E-08 63.2 9.9 48 239-289 120-168 (388)
351 PF00890 FAD_binding_2: FAD bi 97.0 0.00063 1.4E-08 68.8 4.6 53 236-289 147-204 (417)
352 PRK10015 oxidoreductase; Provi 97.0 0.004 8.7E-08 63.1 10.4 79 208-288 6-164 (429)
353 COG0445 GidA Flavin-dependent 97.0 0.00069 1.5E-08 67.8 4.6 78 208-286 5-156 (621)
354 PRK06183 mhpA 3-(3-hydroxyphen 97.0 0.0031 6.8E-08 65.9 9.9 81 207-289 10-175 (538)
355 TIGR01790 carotene-cycl lycope 97.0 0.004 8.7E-08 62.2 10.2 78 209-288 1-141 (388)
356 PRK08641 sdhA succinate dehydr 97.0 0.00073 1.6E-08 71.2 4.9 36 50-88 2-37 (589)
357 TIGR02485 CobZ_N-term precorri 97.0 0.0017 3.8E-08 65.9 7.5 30 56-88 1-30 (432)
358 TIGR02730 carot_isom carotene 97.0 0.00083 1.8E-08 69.5 5.2 52 235-287 234-285 (493)
359 TIGR01372 soxA sarcosine oxida 97.0 0.0034 7.5E-08 70.2 9.9 90 51-175 317-412 (985)
360 PRK06617 2-octaprenyl-6-methox 97.0 0.0045 9.8E-08 61.6 9.8 48 240-290 114-162 (374)
361 COG1635 THI4 Ribulose 1,5-bisp 97.0 0.005 1.1E-07 54.6 8.7 119 207-326 30-229 (262)
362 PLN02328 lysine-specific histo 96.9 0.0013 2.8E-08 70.7 6.1 41 47-90 234-274 (808)
363 PRK12778 putative bifunctional 96.9 0.0014 2.9E-08 71.4 6.4 75 206-290 430-532 (752)
364 KOG1399 Flavin-containing mono 96.9 0.0089 1.9E-07 60.2 11.6 116 206-322 5-193 (448)
365 PRK06475 salicylate hydroxylas 96.9 0.0061 1.3E-07 61.3 10.6 45 243-289 121-168 (400)
366 PTZ00188 adrenodoxin reductase 96.9 0.0032 6.9E-08 63.6 8.2 73 206-289 38-139 (506)
367 TIGR01377 soxA_mon sarcosine o 96.9 0.006 1.3E-07 60.8 10.2 26 209-234 2-27 (380)
368 COG1231 Monoamine oxidase [Ami 96.9 0.0012 2.6E-08 64.8 5.0 40 49-91 5-44 (450)
369 PRK07121 hypothetical protein; 96.9 0.0014 3E-08 67.8 5.8 38 50-90 19-56 (492)
370 PRK12814 putative NADPH-depend 96.9 0.0051 1.1E-07 65.7 10.1 95 50-175 322-438 (652)
371 PLN02676 polyamine oxidase 96.9 0.0014 3.1E-08 67.4 5.7 42 48-91 23-64 (487)
372 PRK06185 hypothetical protein; 96.9 0.0062 1.4E-07 61.3 10.3 82 207-289 6-170 (407)
373 PRK05257 malate:quinone oxidor 96.9 0.0012 2.6E-08 67.9 5.1 63 235-299 188-256 (494)
374 PLN02852 ferredoxin-NADP+ redu 96.9 0.0018 3.8E-08 66.1 6.3 73 206-289 25-127 (491)
375 TIGR01789 lycopene_cycl lycope 96.9 0.0049 1.1E-07 61.1 9.1 75 209-289 1-139 (370)
376 TIGR03219 salicylate_mono sali 96.9 0.0064 1.4E-07 61.4 10.1 44 244-289 117-160 (414)
377 PF12831 FAD_oxidored: FAD dep 96.9 0.00089 1.9E-08 67.8 3.9 88 209-300 1-159 (428)
378 TIGR01318 gltD_gamma_fam gluta 96.9 0.0078 1.7E-07 61.7 10.7 95 50-175 281-399 (467)
379 PF14691 Fer4_20: Dihydroprymi 96.8 6.3E-05 1.4E-09 60.1 -3.6 41 3-43 62-105 (111)
380 TIGR03329 Phn_aa_oxid putative 96.8 0.0013 2.8E-08 67.4 4.9 48 236-287 189-236 (460)
381 PRK07494 2-octaprenyl-6-methox 96.8 0.0055 1.2E-07 61.3 9.4 43 244-289 126-168 (388)
382 PLN00128 Succinate dehydrogena 96.8 0.0014 3.1E-08 69.5 5.2 36 50-88 49-84 (635)
383 KOG1276 Protoporphyrinogen oxi 96.8 0.0017 3.7E-08 63.0 5.1 40 50-90 10-49 (491)
384 PTZ00139 Succinate dehydrogena 96.8 0.0014 3E-08 69.4 5.0 37 49-88 27-63 (617)
385 PF13434 K_oxygenase: L-lysine 96.8 0.00063 1.4E-08 66.5 2.3 41 48-89 187-227 (341)
386 PRK08626 fumarate reductase fl 96.8 0.0013 2.9E-08 70.0 4.8 38 48-88 2-39 (657)
387 PF01946 Thi4: Thi4 family; PD 96.8 0.0067 1.4E-07 54.1 8.3 85 206-290 16-167 (230)
388 PRK08275 putative oxidoreducta 96.8 0.0013 2.9E-08 68.9 4.7 38 50-88 8-45 (554)
389 PRK05732 2-octaprenyl-6-methox 96.8 0.0067 1.4E-07 60.8 9.6 52 243-298 126-177 (395)
390 PRK07803 sdhA succinate dehydr 96.8 0.0015 3.3E-08 69.4 5.1 36 50-88 7-42 (626)
391 PF00732 GMC_oxred_N: GMC oxid 96.8 0.001 2.3E-08 63.8 3.5 64 235-298 198-268 (296)
392 PRK12834 putative FAD-binding 96.8 0.0016 3.4E-08 68.3 5.1 35 50-87 3-37 (549)
393 TIGR02732 zeta_caro_desat caro 96.8 0.0016 3.5E-08 66.9 4.9 52 236-287 225-283 (474)
394 TIGR00137 gid_trmFO tRNA:m(5)U 96.8 0.0017 3.6E-08 64.9 4.7 34 52-88 1-34 (433)
395 PRK08243 4-hydroxybenzoate 3-m 96.8 0.0086 1.9E-07 60.0 10.0 82 208-290 3-165 (392)
396 TIGR01320 mal_quin_oxido malat 96.7 0.0015 3.2E-08 67.1 4.5 63 235-299 183-250 (483)
397 KOG2820 FAD-dependent oxidored 96.7 0.0086 1.9E-07 56.5 8.9 59 235-294 158-217 (399)
398 PRK11101 glpA sn-glycerol-3-ph 96.7 0.0086 1.9E-07 62.7 10.0 52 237-289 156-212 (546)
399 TIGR03315 Se_ygfK putative sel 96.7 0.0033 7E-08 69.3 7.0 71 207-289 537-634 (1012)
400 COG0562 Glf UDP-galactopyranos 96.7 0.0024 5.3E-08 59.7 5.1 38 51-91 1-38 (374)
401 PLN02487 zeta-carotene desatur 96.7 0.0026 5.6E-08 66.3 5.9 53 235-287 300-359 (569)
402 COG1251 NirB NAD(P)H-nitrite r 96.7 0.0074 1.6E-07 62.7 8.9 108 207-326 3-143 (793)
403 PRK12769 putative oxidoreducta 96.7 0.012 2.5E-07 63.1 10.9 95 50-175 467-585 (654)
404 PRK12837 3-ketosteroid-delta-1 96.7 0.0023 4.9E-08 66.5 5.2 37 50-90 6-42 (513)
405 KOG2614 Kynurenine 3-monooxyge 96.6 0.0024 5.2E-08 62.0 4.8 35 51-88 2-36 (420)
406 TIGR01813 flavo_cyto_c flavocy 96.6 0.009 1.9E-07 60.8 9.4 59 237-295 137-200 (439)
407 TIGR00275 flavoprotein, HI0933 96.6 0.0081 1.8E-07 60.3 8.9 51 235-288 110-160 (400)
408 PRK09897 hypothetical protein; 96.6 0.01 2.2E-07 61.3 9.8 49 239-289 116-167 (534)
409 PRK11259 solA N-methyltryptoph 96.6 0.013 2.7E-07 58.4 10.2 26 209-234 5-30 (376)
410 PF05834 Lycopene_cycl: Lycope 96.6 0.0094 2E-07 59.3 9.2 78 209-289 1-143 (374)
411 TIGR03329 Phn_aa_oxid putative 96.6 0.01 2.3E-07 60.7 9.7 26 209-234 26-53 (460)
412 KOG2311 NAD/FAD-utilizing prot 96.6 0.0059 1.3E-07 60.1 7.2 35 49-86 26-60 (679)
413 PRK08958 sdhA succinate dehydr 96.6 0.0027 5.9E-08 66.9 5.3 36 50-88 6-41 (588)
414 PRK06481 fumarate reductase fl 96.6 0.011 2.3E-07 61.4 9.6 56 239-295 199-259 (506)
415 KOG2311 NAD/FAD-utilizing prot 96.6 0.0034 7.3E-08 61.7 5.4 78 208-286 29-184 (679)
416 PLN02464 glycerol-3-phosphate 96.6 0.0027 5.7E-08 67.4 5.2 55 235-289 237-297 (627)
417 PRK06996 hypothetical protein; 96.6 0.01 2.3E-07 59.5 9.3 51 235-287 120-173 (398)
418 PRK06126 hypothetical protein; 96.6 0.012 2.6E-07 61.7 10.1 45 243-289 140-189 (545)
419 PRK12775 putative trifunctiona 96.6 0.0037 7.9E-08 69.8 6.3 73 207-289 430-531 (1006)
420 PRK06854 adenylylsulfate reduc 96.6 0.0023 4.9E-08 67.8 4.5 35 51-88 11-47 (608)
421 PRK02106 choline dehydrogenase 96.5 0.003 6.6E-08 66.4 5.3 61 239-300 210-274 (560)
422 PRK12839 hypothetical protein; 96.5 0.0038 8.3E-08 65.5 5.9 42 46-90 3-44 (572)
423 KOG2404 Fumarate reductase, fl 96.5 0.005 1.1E-07 57.6 5.7 34 53-89 11-44 (477)
424 KOG1346 Programmed cell death 96.5 0.0042 9.1E-08 60.0 5.3 104 49-176 345-451 (659)
425 PRK12835 3-ketosteroid-delta-1 96.5 0.0034 7.4E-08 66.1 5.2 60 236-295 219-283 (584)
426 TIGR03364 HpnW_proposed FAD de 96.4 0.015 3.3E-07 57.5 9.4 46 237-289 152-198 (365)
427 PRK13984 putative oxidoreducta 96.4 0.019 4E-07 61.1 10.5 97 51-175 418-539 (604)
428 PRK12844 3-ketosteroid-delta-1 96.4 0.0042 9E-08 65.1 5.4 37 50-89 5-41 (557)
429 TIGR02360 pbenz_hydroxyl 4-hyd 96.4 0.018 3.8E-07 57.7 9.7 81 208-289 3-164 (390)
430 PRK07538 hypothetical protein; 96.4 0.018 4E-07 58.0 9.8 44 244-289 117-166 (413)
431 TIGR01317 GOGAT_sm_gam glutama 96.4 0.0054 1.2E-07 63.2 6.0 71 206-287 142-239 (485)
432 PRK06263 sdhA succinate dehydr 96.4 0.0038 8.2E-08 65.3 4.7 35 50-88 6-40 (543)
433 TIGR02061 aprA adenosine phosp 96.3 0.0036 7.8E-08 65.9 4.4 33 53-88 1-37 (614)
434 COG1053 SdhA Succinate dehydro 96.3 0.0045 9.7E-08 64.4 4.9 38 48-88 3-40 (562)
435 PLN02815 L-aspartate oxidase 96.3 0.0061 1.3E-07 64.1 5.6 54 302-356 377-430 (594)
436 PF13454 NAD_binding_9: FAD-NA 96.2 0.033 7.1E-07 47.9 8.9 42 243-286 113-155 (156)
437 TIGR02023 BchP-ChlP geranylger 96.2 0.031 6.7E-07 55.9 10.0 78 209-289 2-156 (388)
438 TIGR02028 ChlP geranylgeranyl 96.2 0.034 7.4E-07 55.8 10.3 26 209-234 2-27 (398)
439 PRK11445 putative oxidoreducta 96.2 0.033 7.2E-07 54.9 10.1 46 242-289 110-158 (351)
440 TIGR01989 COQ6 Ubiquinone bios 96.2 0.03 6.6E-07 57.0 10.1 53 238-290 125-185 (437)
441 COG3634 AhpF Alkyl hydroperoxi 96.1 0.0099 2.1E-07 56.2 5.6 83 206-288 210-325 (520)
442 PLN03000 amine oxidase 96.1 0.0078 1.7E-07 65.0 5.6 39 49-90 182-220 (881)
443 PRK12809 putative oxidoreducta 96.1 0.0071 1.5E-07 64.5 5.3 73 206-289 309-408 (639)
444 PRK13800 putative oxidoreducta 96.1 0.0058 1.3E-07 67.8 4.6 36 50-88 12-47 (897)
445 PRK12845 3-ketosteroid-delta-1 96.1 0.0086 1.9E-07 62.7 5.4 40 49-92 14-53 (564)
446 PRK08401 L-aspartate oxidase; 96.1 0.036 7.9E-07 56.8 9.9 49 237-288 127-175 (466)
447 PF00890 FAD_binding_2: FAD bi 96.0 0.029 6.3E-07 56.7 9.1 26 209-234 1-26 (417)
448 PRK07804 L-aspartate oxidase; 96.0 0.036 7.9E-07 57.9 9.9 49 239-287 153-209 (541)
449 PRK08274 tricarballylate dehyd 96.0 0.038 8.2E-07 56.8 9.9 48 238-286 139-190 (466)
450 PLN02464 glycerol-3-phosphate 95.9 0.051 1.1E-06 57.8 10.5 28 207-234 71-98 (627)
451 PTZ00306 NADH-dependent fumara 95.9 0.0099 2.2E-07 67.7 5.6 38 49-89 407-444 (1167)
452 TIGR01811 sdhA_Bsu succinate d 95.9 0.0069 1.5E-07 64.0 4.0 31 54-87 1-31 (603)
453 TIGR02462 pyranose_ox pyranose 95.9 0.0097 2.1E-07 61.5 4.9 59 241-299 225-290 (544)
454 COG0665 DadA Glycine/D-amino a 95.9 0.056 1.2E-06 53.9 10.2 52 235-289 161-213 (387)
455 PF02852 Pyr_redox_dim: Pyridi 95.8 0.02 4.3E-07 46.0 5.3 56 405-460 50-110 (110)
456 TIGR01812 sdhA_frdA_Gneg succi 95.8 0.058 1.3E-06 56.9 10.3 48 239-287 138-190 (566)
457 PRK07573 sdhA succinate dehydr 95.8 0.054 1.2E-06 57.7 9.9 46 240-286 180-230 (640)
458 TIGR00137 gid_trmFO tRNA:m(5)U 95.8 0.01 2.2E-07 59.3 4.2 26 209-234 2-27 (433)
459 COG3573 Predicted oxidoreducta 95.7 0.015 3.3E-07 54.7 4.9 38 49-89 3-40 (552)
460 PRK13369 glycerol-3-phosphate 95.7 0.05 1.1E-06 56.4 9.3 48 240-289 165-216 (502)
461 PLN00093 geranylgeranyl diphos 95.7 0.074 1.6E-06 54.2 10.3 28 207-234 39-66 (450)
462 PRK14106 murD UDP-N-acetylmura 95.7 0.016 3.5E-07 59.2 5.5 36 49-87 3-38 (450)
463 TIGR01811 sdhA_Bsu succinate d 95.7 0.056 1.2E-06 57.2 9.6 44 243-286 146-194 (603)
464 PRK12771 putative glutamate sy 95.7 0.075 1.6E-06 56.0 10.5 96 49-175 265-381 (564)
465 KOG0404 Thioredoxin reductase 95.6 0.033 7.2E-07 49.5 6.3 83 207-293 8-129 (322)
466 PRK12843 putative FAD-binding 95.6 0.019 4.2E-07 60.5 5.9 60 235-295 226-290 (578)
467 PLN02976 amine oxidase 95.6 0.017 3.7E-07 65.0 5.4 38 50-90 692-729 (1713)
468 PRK06567 putative bifunctional 95.6 0.021 4.6E-07 62.3 6.0 33 205-237 381-413 (1028)
469 KOG1298 Squalene monooxygenase 95.5 0.018 3.9E-07 55.4 4.7 39 48-89 42-80 (509)
470 KOG2852 Possible oxidoreductas 95.5 0.017 3.8E-07 53.3 4.3 51 235-287 153-207 (380)
471 KOG2960 Protein involved in th 95.4 0.004 8.6E-08 54.7 -0.0 38 51-89 76-113 (328)
472 COG3380 Predicted NAD/FAD-depe 95.4 0.031 6.7E-07 51.3 5.5 82 209-293 3-165 (331)
473 PRK06452 sdhA succinate dehydr 95.4 0.082 1.8E-06 55.6 9.6 47 239-286 145-196 (566)
474 TIGR00551 nadB L-aspartate oxi 95.3 0.076 1.7E-06 54.8 9.1 50 239-289 137-190 (488)
475 PRK12266 glpD glycerol-3-phosp 95.3 0.086 1.9E-06 54.7 9.4 48 240-289 165-217 (508)
476 PLN02985 squalene monooxygenas 95.3 0.11 2.4E-06 53.9 10.2 28 207-234 43-70 (514)
477 PLN02927 antheraxanthin epoxid 95.3 0.1 2.2E-06 55.3 9.9 30 205-234 79-108 (668)
478 PRK08294 phenol 2-monooxygenas 95.3 0.11 2.4E-06 55.4 10.2 28 207-234 32-60 (634)
479 TIGR02485 CobZ_N-term precorri 95.3 0.083 1.8E-06 53.7 9.0 60 236-295 129-191 (432)
480 PRK09078 sdhA succinate dehydr 95.2 0.11 2.5E-06 54.9 10.1 48 240-287 159-211 (598)
481 TIGR01810 betA choline dehydro 95.2 0.016 3.6E-07 60.5 3.8 63 236-299 200-266 (532)
482 KOG2614 Kynurenine 3-monooxyge 95.2 0.048 1E-06 53.2 6.5 27 208-234 3-29 (420)
483 COG2303 BetA Choline dehydroge 95.2 0.02 4.4E-07 59.7 4.3 64 235-299 208-277 (542)
484 KOG3851 Sulfide:quinone oxidor 95.2 0.009 1.9E-07 55.9 1.5 85 206-295 38-152 (446)
485 PRK06175 L-aspartate oxidase; 95.1 0.12 2.7E-06 52.4 9.5 45 242-287 141-188 (433)
486 PRK05945 sdhA succinate dehydr 95.0 0.14 3E-06 54.1 10.0 51 237-288 142-197 (575)
487 KOG0029 Amine oxidase [Seconda 95.0 0.091 2E-06 54.0 8.1 43 244-287 228-270 (501)
488 PRK07057 sdhA succinate dehydr 94.9 0.17 3.6E-06 53.6 10.4 47 242-288 160-211 (591)
489 PTZ00139 Succinate dehydrogena 94.9 0.15 3.2E-06 54.3 10.0 48 240-287 176-228 (617)
490 KOG2853 Possible oxidoreductas 94.9 0.026 5.6E-07 53.4 3.7 52 50-101 85-137 (509)
491 PRK07121 hypothetical protein; 94.9 0.19 4.1E-06 52.0 10.5 47 241-287 188-238 (492)
492 PRK06263 sdhA succinate dehydr 94.9 0.13 2.9E-06 53.8 9.4 49 239-287 143-196 (543)
493 KOG0405 Pyridine nucleotide-di 94.7 0.03 6.4E-07 53.2 3.6 99 49-175 187-288 (478)
494 PRK08958 sdhA succinate dehydr 94.7 0.19 4.2E-06 53.0 10.1 47 241-287 154-205 (588)
495 KOG2844 Dimethylglycine dehydr 94.7 0.087 1.9E-06 54.3 7.0 52 235-288 192-243 (856)
496 PRK06854 adenylylsulfate reduc 94.6 0.22 4.7E-06 52.9 10.3 46 240-286 142-193 (608)
497 KOG0399 Glutamate synthase [Am 94.5 0.049 1.1E-06 59.1 5.0 73 206-289 1784-1883(2142)
498 PLN00128 Succinate dehydrogena 94.4 0.19 4.1E-06 53.6 9.3 47 241-287 198-249 (635)
499 PRK07803 sdhA succinate dehydr 94.4 0.24 5.2E-06 52.8 10.0 41 245-286 166-211 (626)
500 PRK13800 putative oxidoreducta 94.4 0.06 1.3E-06 59.9 5.7 26 302-327 361-386 (897)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=4.8e-56 Score=443.88 Aligned_cols=371 Identities=28% Similarity=0.440 Sum_probs=315.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
.+++|||||||+||++||.+|++.++ +.+|+|++++++++|.+|++++.++........ .....++
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-------------~~~~~~~ 67 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-------------QVLPANW 67 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-------------ccCCHHH
Confidence 45689999999999999999999987 789999999999999999998866543221111 1234678
Q ss_pred HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCe
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 209 (469)
+.+.+++++.++.|..+|+++++|++.+|+++.||+||||||++|+.+| .++...++++++++..++.++.+.+..+++
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~ 146 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERS 146 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCe
Confidence 8899999999988999999999999999999999999999999987544 344446788999999999888888888999
Q ss_pred EEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165 210 VVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 270 (469)
Q Consensus 210 vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~ 270 (469)
++|||+|++|+|+|..|.++|.+|+ .+.+.+++.||++++++.+++++. ++.+ .+.+.
T Consensus 147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~-~v~l~ 223 (396)
T PRK09754 147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKV-ELTLQ 223 (396)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEE-EEEEC
Confidence 9999999999999999999999987 345566789999999999999974 2333 57788
Q ss_pred CCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHH
Q 012165 271 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 350 (469)
Q Consensus 271 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~ 350 (469)
+|+++++|.||+++|.+||+.+++++++..+ ++|.||+++||++|||||+|||+..+.. .|...+.++|..|..||+.
T Consensus 224 ~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~ 301 (396)
T PRK09754 224 SGETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQI 301 (396)
T ss_pred CCCEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHH
Confidence 9999999999999999999988888888775 6799999999999999999999987765 5666678899999999999
Q ss_pred HHHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCCc-EEEEccCC-CcEEEEEEeCCEEEEEEeecCChHHh
Q 012165 351 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-TIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF 428 (469)
Q Consensus 351 ~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~ 428 (469)
+|+||++. ..+|..+||||+++|+.+ ++++|....+ ....++.+ .++..+|+++|+|+|+++ .|+++.+
T Consensus 302 aa~ni~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~ 372 (396)
T PRK09754 302 AAAAMLGL-PLPLLPPPWFWSDQYSDN-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGREI 372 (396)
T ss_pred HHHHhcCC-CCCCCCCCceEEEeCCcc-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHHH
Confidence 99999964 567899999999999875 8999975543 44566544 457778889999999996 8889999
Q ss_pred HHHHHHHhCCCCCChhhhcCC
Q 012165 429 QLLPTLARSQPFVDKAKLQQA 449 (469)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ 449 (469)
..++++++.+..+++..+.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~ 393 (396)
T PRK09754 373 RPIRKWIQSGKTFDAKLLIDE 393 (396)
T ss_pred HHHHHHHHCCCCCCHHHhcCc
Confidence 999999999999998888765
No 2
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=3.4e-52 Score=397.36 Aligned_cols=383 Identities=44% Similarity=0.742 Sum_probs=342.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||+|++|..|+.++++.++ ..+++++..+.++||.||.|++.+....... ..+..+|
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~---------------a~r~~e~ 136 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLTVGEGL---------------AKRTPEF 136 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceeeccccc---------------cccChhh
Confidence 36799999999999999999999997 7899999999999999999988554332222 3466789
Q ss_pred HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCe
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 209 (469)
|++.+|++++++.|+++|...++|.+.+|+.+.|++|+||||+.++. +++||.+.+++.+++++.+++.+........+
T Consensus 137 Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~ 215 (478)
T KOG1336|consen 137 YKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGK 215 (478)
T ss_pred HhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCce
Confidence 99999999999999999999999999999999999999999998874 56789889999999999999999888888999
Q ss_pred EEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165 210 VVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 270 (469)
Q Consensus 210 vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~ 270 (469)
|+++|+|++|+|+|..|...+.+++ .++++++++||++++++.+.+++.+++|++..|.+.
T Consensus 216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~ 295 (478)
T KOG1336|consen 216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK 295 (478)
T ss_pred EEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEec
Confidence 9999999999999999999999988 678999999999999999999998888999999999
Q ss_pred CCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHH
Q 012165 271 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 349 (469)
Q Consensus 271 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~ 349 (469)
||+++++|+||+.+|.+||+.+++. +..++ .|+|.||+++||++|||||+||++.+|...++...+++|++.|+.+|+
T Consensus 296 dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~ 374 (478)
T KOG1336|consen 296 DGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGR 374 (478)
T ss_pred cCCEeccCeEEEeeccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHH
Confidence 9999999999999999999999987 55544 799999999999999999999999999988888777999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCCcEEEEccCC-CcEEEEEEeCCEEEEEEeecCChHHh
Q 012165 350 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF 428 (469)
Q Consensus 350 ~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~ 428 (469)
++...+.......+...||||+..|+.. |+++|...++.++.|+.+ .+|..+|++ +..+++.+-.+..+..
T Consensus 375 ~av~ai~~~~~~~~~~lPyf~t~~f~~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~ 446 (478)
T KOG1336|consen 375 QAVKAIKMAPQDAYDYLPYFYTRFFSLS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEV 446 (478)
T ss_pred hhhhhhhccCcccccccchHHHHHhhhh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHH
Confidence 8877776544444789999999999864 899998888888888876 468999999 8888888877778889
Q ss_pred HHHHHHHhCCCCCChhhhcCCCcHHHHHHH
Q 012165 429 QLLPTLARSQPFVDKAKLQQASSVEEALEI 458 (469)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (469)
..+..++++++.+..-.+.++.+.+.+++.
T Consensus 447 ~~~a~l~~~~~~v~~~~~~~~~~~~~~~~~ 476 (478)
T KOG1336|consen 447 SQFAKLARQGPEVTSLKLLSKSGDSFWLTI 476 (478)
T ss_pred HHHHHHHhcCCcchhhhhccccchhhHHhh
Confidence 999999999999998888888888888765
No 3
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=7.8e-46 Score=395.63 Aligned_cols=363 Identities=20% Similarity=0.341 Sum_probs=286.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
+++|||||+|+||+.+|.+|++++. ++.+||||+++++++|.++.++.. +... ...++ .....+|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~-~~~~--~~~~l-----------~~~~~~~ 68 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSY-FSHH--TAEEL-----------SLVREGF 68 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHh-HcCC--CHHHc-----------cCCCHHH
Confidence 4589999999999999999988742 246899999999999999888763 3221 11122 2345788
Q ss_pred HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCe
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 209 (469)
+++++++++.+++|+.+|++.+.|++.+|+++.||+||||||++|+ .|+++|.+.++++.++++.+...+......+++
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~ 147 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKR 147 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCe
Confidence 9999999999989999999999999999989999999999999987 566788777889999999999998888888999
Q ss_pred EEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165 210 VVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 270 (469)
Q Consensus 210 vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~ 270 (469)
++|||+|++|+|+|..|.++|.+|+ .+.+.+++.||+++++..++++..++++....+.++
T Consensus 148 vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~ 227 (847)
T PRK14989 148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA 227 (847)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC
Confidence 9999999999999999999999987 356778899999999999999975433445578889
Q ss_pred CCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHH
Q 012165 271 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 349 (469)
Q Consensus 271 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~ 349 (469)
||+++++|+||+++|++||+++++++|++.+ +|+|.||++|||++|||||+|||+......++ .+..|..+|+
T Consensus 228 dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a~ 301 (847)
T PRK14989 228 DGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMAQ 301 (847)
T ss_pred CCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHHH
Confidence 9999999999999999999999999999875 57899999999999999999999987654433 4567999999
Q ss_pred HHHHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCCc------EEEEccCCCcEEEEEEe--CCEEEEEEee
Q 012165 350 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------TIEIGNFDPKIATFWID--SGKLKGVLVE 421 (469)
Q Consensus 350 ~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------~~~~~~~~~~~~~~~~~--~~~l~g~~~~ 421 (469)
.+|.||++.. ..|..... +......|.. +..+|...+. ..........|+|++++ +++|+|+++
T Consensus 302 vaa~~i~g~~-~~~~g~~~--~~~lk~~G~~----v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~l- 373 (847)
T PRK14989 302 VAVDHLLGSE-NAFEGADL--SAKLKLLGVD----VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVL- 373 (847)
T ss_pred HHHHHhcCCC-cCCCCccc--ceEEEECCcc----eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEE-
Confidence 9999999753 34433221 2222222211 3344532221 12233333568888885 469999997
Q ss_pred cCChHHhHHHHHHHhCCCCCC
Q 012165 422 SGSPEEFQLLPTLARSQPFVD 442 (469)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~ 442 (469)
.|+......+..++..+..+.
T Consensus 374 vGd~~~~~~l~~~~~~~~~l~ 394 (847)
T PRK14989 374 VGDTSDYGNLLQLVLNAIELP 394 (847)
T ss_pred ECCHHHHHHHHHHHHcCCCCc
Confidence 677777788888776665543
No 4
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=6.5e-46 Score=397.05 Aligned_cols=358 Identities=22% Similarity=0.362 Sum_probs=290.4
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHC
Q 012165 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133 (469)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (469)
|||||||+||+++|.+|++.+..+.+||||+++++++|.++.++. ++... ....++ .....+|++++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~-~l~g~-~~~~~l-----------~~~~~~~~~~~ 67 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGE-ADLDDI-----------TLNSKDWYEKH 67 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccH-HHCCC-CCHHHc-----------cCCCHHHHHHC
Confidence 699999999999999999986435699999999999999998876 44321 111222 23467889999
Q ss_pred CcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEE
Q 012165 134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (469)
Q Consensus 134 ~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVv 213 (469)
+++++++++|+.||+++++|++.+|.++.||+||||||+.|+ .|++||.+.++++.++++.+++.+++....+++++||
T Consensus 68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVV 146 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVI 146 (785)
T ss_pred CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEE
Confidence 999999999999999999999999999999999999999997 5667888888999999999999988888889999999
Q ss_pred cCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE
Q 012165 214 GGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 274 (469)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~ 274 (469)
|+|++|+|+|..|+++|.+++ .+.+.+++.||++++++.++++.. ++.+..|.++||++
T Consensus 147 GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~ 224 (785)
T TIGR02374 147 GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSS 224 (785)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCE
Confidence 999999999999999999987 345678899999999999999973 44556788999999
Q ss_pred EeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHH
Q 012165 275 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 354 (469)
Q Consensus 275 i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~ 354 (469)
+++|+||+++|.+|+++++++++++.+ ++|.||++|||++|||||+|||+..+...++ .+..|..||+.+|.|
T Consensus 225 i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~n 297 (785)
T TIGR02374 225 LEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLADH 297 (785)
T ss_pred EEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 7899999999999999999999987654433 466789999999999
Q ss_pred HhcCCCCCCCCCCceee-ecccccCCCcceeeEEeecCCC-----cEEEEccCCCcEEEEEEeCCEEEEEEeecCChHHh
Q 012165 355 LLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG-----ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEF 428 (469)
Q Consensus 355 i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~G~~~~-----~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 428 (469)
|++....+|...+.... ..+++. +..+|.... ...........|.++++++++|+|+++ .++....
T Consensus 298 i~g~~~~~~~~~~~~~~lk~~g~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~~ 369 (785)
T TIGR02374 298 ICGVECEEYEGSDLSAKLKLLGVD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSDY 369 (785)
T ss_pred hcCCCCcCCCCCccceEEEECCcc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHHH
Confidence 99754356655443211 233322 344554321 112222223458899999999999997 7788889
Q ss_pred HHHHHHHhCCCCCC
Q 012165 429 QLLPTLARSQPFVD 442 (469)
Q Consensus 429 ~~~~~~~~~~~~~~ 442 (469)
..+.++++++..+.
T Consensus 370 ~~L~~li~~~~~l~ 383 (785)
T TIGR02374 370 GRLLDMVLKQADIS 383 (785)
T ss_pred HHHHHHHHcCCCCC
Confidence 99999998776554
No 5
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=9.7e-46 Score=367.58 Aligned_cols=343 Identities=23% Similarity=0.358 Sum_probs=268.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
+++|||||||+||+++|..|++.+. +.+||||+++++.+|.+|.+++.+. . .....++. .....+++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~-~~~Itvi~~~~~~~y~~~~l~~~~~-~-~~~~~~~~----------~~~~~~~~ 68 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDA-HIPITLITADSGDEYNKPDLSHVFS-Q-GQRADDLT----------RQSAGEFA 68 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCcCcCcCcHHHh-C-CCCHHHhh----------cCCHHHHH
Confidence 4689999999999999999999875 7899999999999999998876332 2 22222210 11245677
Q ss_pred HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeE
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v 210 (469)
++++++++.+++|+++|+++++|++ ++..+.||+||||||+.|. .|+++|... ++.++++.+...+...+..++++
T Consensus 69 ~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~v 144 (377)
T PRK04965 69 EQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRV 144 (377)
T ss_pred HhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeE
Confidence 8899999998899999999888887 4667999999999999987 466666433 77888888888887777788999
Q ss_pred EEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC
Q 012165 211 VVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 271 (469)
Q Consensus 211 vVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~ 271 (469)
+|||+|++|+|+|..|.+++.+++ .+.+.+++.||++++++.+++++.+ ++. ..+.+.+
T Consensus 145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~ 222 (377)
T PRK04965 145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDS 222 (377)
T ss_pred EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcC
Confidence 999999999999999999998887 3456788899999999999999854 223 3577889
Q ss_pred CCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHH
Q 012165 272 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 351 (469)
Q Consensus 272 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~ 351 (469)
|+++++|.||+|+|.+|++.+++.+|+..++ ++.||++|||+.|||||+|||+..+... ...++.|..||+.+
T Consensus 223 g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~~ 295 (377)
T PRK04965 223 GRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMAL 295 (377)
T ss_pred CcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHHH
Confidence 9999999999999999999999999998875 5999999999999999999999875422 23566789999999
Q ss_pred HHHHhcCCCCCCCCCCceee-ecccccCCCcceeeEEeecCCC---cEEEEccCCCcEEEEEEeCCEEEEEEeecCChHH
Q 012165 352 IKALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEE 427 (469)
Q Consensus 352 a~~i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 427 (469)
|+||++. ..+|...+..++ ..++++ +..+|...+ .+....+.+..|.++++++|+|+|++++++....
T Consensus 296 a~n~~g~-~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~ 367 (377)
T PRK04965 296 AKNLLGQ-NTPLKLPAMLVKVKTPELP-------LQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMKE 367 (377)
T ss_pred HHHhcCC-CcccccCCccEEEecCcee-------eEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHHH
Confidence 9999974 345665444333 234432 666776543 1222233335588899999999999985554543
No 6
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=1.6e-46 Score=373.85 Aligned_cols=362 Identities=24% Similarity=0.389 Sum_probs=305.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
...++||||.|+||..+..++.+......+||++..+++..|+|..|+. ++.+. ....++ .....+|
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~~-~~~edi-----------~l~~~dw 68 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGE-KTAEDI-----------SLNRNDW 68 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc-ccCCC-ccHHHH-----------hccchhh
Confidence 3468999999999999999999965545799999999999999999987 44332 222222 2456799
Q ss_pred HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCe
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 209 (469)
|++++++++.+..|+.||++++.|+++.|.++.||+||+||||.|+.+| +||.+.++++.++++.|...+....+..++
T Consensus 69 y~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~ 147 (793)
T COG1251 69 YEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKK 147 (793)
T ss_pred HHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999998555 899999999999999999998888667788
Q ss_pred EEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165 210 VVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 270 (469)
Q Consensus 210 vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~ 270 (469)
.+|||||..|+|.|..|...|.+++ .++..+++.|++++++...+++.. ++.+.++.++
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~ 225 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFA 225 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeec
Confidence 8999999999999999999999987 678889999999999998888873 6777899999
Q ss_pred CCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHH
Q 012165 271 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 350 (469)
Q Consensus 271 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~ 350 (469)
||+.+++|+||+|+|.+||.++...+|+..++ +|+||++|||++|+|||+|+|+.+....+|. +.-+..|++.
T Consensus 226 DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yGL------VaP~yeq~~v 298 (793)
T COG1251 226 DGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYGL------VAPLYEQAKV 298 (793)
T ss_pred CCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCcccee------hhHHHHHHHH
Confidence 99999999999999999999999999999986 9999999999999999999999988777664 3448899999
Q ss_pred HHHHHhcCCCCCCCC-CCceeeecccccCCCcceeeEEeecCC----C-cEEEEccCCCcEEEEEEeCCEEEEEEeecCC
Q 012165 351 CIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNV----G-ETIEIGNFDPKIATFWIDSGKLKGVLVESGS 424 (469)
Q Consensus 351 ~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~G~~~----~-~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 424 (469)
+|.++++.....|.. ++ +.....+|.. +...|+.. . .+++.......|+++.+++|+|+|+++ .|+
T Consensus 299 ~a~hl~~~~~~~y~gsv~---stkLKv~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GD 370 (793)
T COG1251 299 LADHLCGGEAEAYEGSVT---STKLKVSGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGD 370 (793)
T ss_pred HHHHhccCcccccccccc---hhhhcccccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-Eee
Confidence 999999865544533 22 2445555533 33445432 1 244454455679999999999999997 899
Q ss_pred hHHhHHHHHHHhCCCCCC
Q 012165 425 PEEFQLLPTLARSQPFVD 442 (469)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~ 442 (469)
..+-..|..|+..+..++
T Consensus 371 t~d~~~l~~li~~~~~~s 388 (793)
T COG1251 371 TSDGGWLLDLILKGADIS 388 (793)
T ss_pred cccchHHHHHHhcCCCcc
Confidence 999999999998888775
No 7
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=2.7e-43 Score=355.85 Aligned_cols=381 Identities=20% Similarity=0.286 Sum_probs=268.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (469)
.+|||||||+||++||.+|++.+. +.+|+|||++++++|.++.++. ++.......... .......+++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~-~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~----------~~~~~~~~~~ 69 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYA----------LAYTPEKFYD 69 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCC-CCCEEEEECCCCcccccCCcch-hhcCccCCHHHc----------ccCCHHHHHH
Confidence 489999999999999999998864 7899999999999888765543 221111000000 0012234557
Q ss_pred HCCcEEEeCCcEEEEeCCCcEEEeCCC---e--EEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhh-
Q 012165 132 EKGIEMIYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE- 205 (469)
Q Consensus 132 ~~~i~~~~~~~v~~id~~~~~v~~~~g---~--~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~- 205 (469)
+.+++++.+++|++||+++++|.+.++ + ++.||+||||||++|+. |.. ..+++++++++.+...+.+.+.
T Consensus 70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~~ 145 (438)
T PRK13512 70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIKA 145 (438)
T ss_pred hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHhh
Confidence 789999988899999999999888653 2 47899999999999864 432 2466788888888877766543
Q ss_pred -cCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 012165 206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 266 (469)
Q Consensus 206 -~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~ 266 (469)
.+++++|||+|++|+|+|..|+++|.+|+ .+.+.+++.||++++++++++++. . .
T Consensus 146 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~ 219 (438)
T PRK13512 146 NQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING---N---E 219 (438)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---E
Confidence 46899999999999999999999999988 346778889999999999999973 1 4
Q ss_pred EEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHH
Q 012165 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 345 (469)
Q Consensus 267 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~ 345 (469)
+++++|+++++|.|++++|++||++++++.|+..+ +|+|.||+++||++|||||+|||+..+....+..........|.
T Consensus 220 v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~ 299 (438)
T PRK13512 220 VTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAH 299 (438)
T ss_pred EEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHH
Confidence 67788889999999999999999999999998875 57799999999999999999999974322222211222344588
Q ss_pred HHHHHHHHHHhcCCCCCC-CCCCceeeecccccCCCcceeeEEeecCCCc-------EEEE---------ccCCCcEEEE
Q 012165 346 QSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIEI---------GNFDPKIATF 408 (469)
Q Consensus 346 ~~a~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~~---------~~~~~~~~~~ 408 (469)
.+|+.+|+||++....++ ...+..+...++.+ +..+|....+ .... ......+.|+
T Consensus 300 ~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~kl 372 (438)
T PRK13512 300 RAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRV 372 (438)
T ss_pred HHHHHHHHHhcCCCccccCCcccceEEEEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEE
Confidence 899999999986432223 22222222333322 3334443211 0000 0011236677
Q ss_pred EEe--CCEEEEEEeecCC-hHHh-HHHHHHHhCCCCCCh-hh--hcCCCcHH---HHHHHHHh
Q 012165 409 WID--SGKLKGVLVESGS-PEEF-QLLPTLARSQPFVDK-AK--LQQASSVE---EALEIARA 461 (469)
Q Consensus 409 ~~~--~~~l~g~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~~---~~~~~~~~ 461 (469)
+++ +++|+|+++++.+ +.++ ..+..+++.+.+++. .. +..||+++ +.+..|++
T Consensus 373 v~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~~~~~ 435 (438)
T PRK13512 373 YYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGY 435 (438)
T ss_pred EEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCccccHHHHHHH
Confidence 664 5999999987765 5554 445556788877763 22 34566555 55555544
No 8
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=7.1e-43 Score=355.04 Aligned_cols=378 Identities=21% Similarity=0.286 Sum_probs=271.5
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (469)
+|||||||+||+++|.+|++.+. +.+|+|||+++++.|..+.++. ++........++ .....+++++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~ 68 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFFDDPNTM-----------IARTPEEFIK 68 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-EeccccCCHHHh-----------hcCCHHHHHH
Confidence 79999999999999999999874 6799999999988776544432 221111111111 2345677888
Q ss_pred CCcEEEeCCcEEEEeCCCcEEEeCC---CeEEE--eccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhh--
Q 012165 133 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-- 205 (469)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~~v~~~~---g~~~~--yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~-- 205 (469)
.+++++.+++|+.+|++++.|++.+ +..+. ||+||||||++|. .|.++|.+.++++++.+..+...+.+.+.
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI-IPPIKNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 9999998889999999999888754 55666 9999999999987 46677776778888888877777766553
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 266 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~ 266 (469)
.+++++|||+|++|+|+|..+.+.|.+++ .+.+.+++.||++++++++++++. ++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~ 225 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG 225 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence 46899999999999999999999998887 344667889999999999999963 344444
Q ss_pred EEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHH
Q 012165 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 345 (469)
Q Consensus 267 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~ 345 (469)
+.++ +.++++|.+|+|+|++|++++++++|++.+ +|+|.||+++||++|||||+|||+..+....+.......+..|.
T Consensus 226 v~~~-~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~ 304 (444)
T PRK09564 226 VVTD-KGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN 304 (444)
T ss_pred EEeC-CCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence 5554 447999999999999999999999998764 57899999999999999999999987554333333344677899
Q ss_pred HHHHHHHHHHhcCCCCCCCC-CCceeeecccccCCCcceeeEEeecCCCc-------E--EEEc---------cCCCcEE
Q 012165 346 QSAQHCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG---------NFDPKIA 406 (469)
Q Consensus 346 ~~a~~~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~~~---------~~~~~~~ 406 (469)
.||+.+|+||++.. ..++. .+......++++ +..+|....+ . .... +....|.
T Consensus 305 ~qg~~~a~ni~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (444)
T PRK09564 305 KLGRMVGENLAGRH-VSFKGTLGSACIKVLDLE-------AARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYV 376 (444)
T ss_pred HHHHHHHHHhcCCC-CCCCCcccceEEEECCEE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEE
Confidence 99999999999743 22221 111111122221 4445543211 0 1010 1112367
Q ss_pred EEEE--eCCEEEEEEeecCC-h-HHhHHHHHHHhCCCCCChhh-h--cCCCcHHHH
Q 012165 407 TFWI--DSGKLKGVLVESGS-P-EEFQLLPTLARSQPFVDKAK-L--QQASSVEEA 455 (469)
Q Consensus 407 ~~~~--~~~~l~g~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~ 455 (469)
|+.+ ++++|+|+++++.. + +.+..+..+|+.+.+++.-. + ..+|++.|+
T Consensus 377 klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~ 432 (444)
T PRK09564 377 KLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFART 432 (444)
T ss_pred EEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCC
Confidence 7776 36999999986654 5 34555666788888776322 2 234777653
No 9
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=6.3e-41 Score=332.13 Aligned_cols=378 Identities=24% Similarity=0.353 Sum_probs=263.7
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCcccccCCC------CC----C-------
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPL------DK----K------- 107 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~l~~~~~~~~------~~----~------- 107 (469)
+++||+||||+|+||..||.++++.|. ++.+||+...++.. -+--+|.++... .+ .
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~---kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~ 78 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL---KVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP 78 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC---CEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence 457999999999999999999999997 39999999533211 011122211100 00 0
Q ss_pred CCCCCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCC--CeEEEeccEEeccCCCCCcCCCCCC
Q 012165 108 PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEKIG 182 (469)
Q Consensus 108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~--g~~~~yd~lVlAtG~~~~~~~~~~g 182 (469)
..++..+... ...........+++.++++++.+ ...-++ .++|.+.+ .+++++|++|||||++|+. |+.++
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G-~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~-~~~~~ 154 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG-EARFVD--PHTVEVTGEDKETITADNIIIATGSRPRI-PPGPG 154 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEE-EEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcC-CCCCC
Confidence 0011000000 00000111233456679999987 555444 56666665 4789999999999999985 44444
Q ss_pred CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG 244 (469)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g 244 (469)
.+...+.+ .+........+++++|||||++|+|+|..++++|.+|+ .+.+.|++.|
T Consensus 155 ~~~~~~~~------s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~g 228 (454)
T COG1249 155 IDGARILD------SSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGG 228 (454)
T ss_pred CCCCeEEe------chhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCC
Confidence 32222222 22222223679999999999999999999999999998 5678888889
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEcCCCC--EEeCCEEEEccCCccCCc--hhhhcCCcccC-CCEEeCCCCCCCCCceE
Q 012165 245 VKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS--PFERVGLNSSV-GGIQVDGQFRTRMPGIF 319 (469)
Q Consensus 245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~--~~~~~gl~~~~-g~i~Vd~~~~t~~~~Vf 319 (469)
+++++++.+++++..+++ ..+.+++|+ ++++|.+++|+|++||++ -|++.|++.++ |+|.||++++|++|+||
T Consensus 229 v~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~Iy 306 (454)
T COG1249 229 VKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIY 306 (454)
T ss_pred eEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEE
Confidence 999999999999865444 367888876 799999999999999998 38999999874 89999988888999999
Q ss_pred EeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCCcceeeEEeecCCCcE--
Q 012165 320 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET-- 395 (469)
Q Consensus 320 a~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~-- 395 (469)
|+|||+..+. ..|. |..+|+.+|+||++... ..|..+|+ ..|..+- +..+|.++.+.
T Consensus 307 A~GDV~~~~~--------Lah~--A~~eg~iaa~~i~g~~~~~~d~~~iP~---~ift~Pe------ia~VGlte~ea~~ 367 (454)
T COG1249 307 AIGDVIGGPM--------LAHV--AMAEGRIAAENIAGGKRTPIDYRLIPS---VVFTDPE------IASVGLTEEEAKE 367 (454)
T ss_pred EeeccCCCcc--------cHhH--HHHHHHHHHHHHhCCCCCcCcccCCCE---EEECCCc------ceeeeCCHHHHHh
Confidence 9999988764 2244 99999999999996222 24677886 5565553 45566543210
Q ss_pred ----EEEc--cC-----------CCcEEEEEEe--CCEEEEEEeecCChHHhHHHHH-HHhCCCCCChh--hhcCCCcHH
Q 012165 396 ----IEIG--NF-----------DPKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKA--KLQQASSVE 453 (469)
Q Consensus 396 ----~~~~--~~-----------~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~ 453 (469)
+..+ .+ ...|.|++++ +++|+|+++++.+++++...-. +++.+.+.+.. .++.|||++
T Consensus 368 ~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~s 447 (454)
T COG1249 368 AGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLS 447 (454)
T ss_pred cCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChH
Confidence 1111 11 1237777775 4899999998888888776655 46777755532 347899999
Q ss_pred HHHHHHH
Q 012165 454 EALEIAR 460 (469)
Q Consensus 454 ~~~~~~~ 460 (469)
|++++|+
T Consensus 448 E~~~~a~ 454 (454)
T COG1249 448 EALKEAA 454 (454)
T ss_pred HHHHHhC
Confidence 9999874
No 10
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=8.4e-40 Score=333.42 Aligned_cols=385 Identities=18% Similarity=0.278 Sum_probs=256.2
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-cccccC--------------CCC---CC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYLF--------------PLD---KK 107 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~l-~~~~~~--------------~~~---~~ 107 (469)
++.++||+||||||||++||..|++.|. +|+|||++...+- ++... +|.++. +.. ..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGM---KVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV 78 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence 4556999999999999999999999987 7999998643221 11111 111100 000 00
Q ss_pred CCCCCCCcccc---CCCCCCCCHhHHHHC-CcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCC
Q 012165 108 PARLPGFHTCV---GSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 183 (469)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~ 183 (469)
..++..+.... ..........++++. +++++.++.+ . .+.++|++ ++.++.||+||||||++|+ .|+++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~--~~~~~v~v-~~~~~~~d~lViATGs~p~-~p~i~G~ 153 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-F--ESPNTVRV-GGETLRAKRIFINTGARAA-IPPIPGL 153 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-E--ccCCEEEE-CcEEEEeCEEEEcCCCCCC-CCCCCCC
Confidence 00110000000 000001223455666 9999987543 2 34567777 4567999999999999997 5666775
Q ss_pred CcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCc
Q 012165 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGV 245 (469)
Q Consensus 184 ~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV 245 (469)
+..++++.. .+......+++++|||+|++|+|+|..|.++|.+|+ .+.+.+++.||
T Consensus 154 ~~~~~~~~~------~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV 227 (463)
T PRK06370 154 DEVGYLTNE------TIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGI 227 (463)
T ss_pred CcCceEcch------HhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCC
Confidence 444444332 222222457999999999999999999999999987 34566788999
Q ss_pred EEEcCCeEEEEEeCCCCcEEEEEcC-CCCEEeCCEEEEccCCccCCc-h-hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165 246 KFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAI 321 (469)
Q Consensus 246 ~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~ 321 (469)
++++++.+.+++..+++....+... +++++++|.||+|+|.+||++ + +++.+++.+ +|+|.||+++||++|+|||+
T Consensus 228 ~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAi 307 (463)
T PRK06370 228 DVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAA 307 (463)
T ss_pred EEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEe
Confidence 9999999999986433332223332 345799999999999999998 4 678888775 57799999999999999999
Q ss_pred ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeecccccCCCcceeeEEeecCCC------
Q 012165 322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------ 393 (469)
Q Consensus 322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~------ 393 (469)
|||+..+. ....|..||+.+|+||++....+ +..+|+ .. |..+. +..+|....
T Consensus 308 GD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~-~~~p~------ia~vG~te~~a~~~g 368 (463)
T PRK06370 308 GDCNGRGA----------FTHTAYNDARIVAANLLDGGRRKVSDRIVPY--AT-YTDPP------LARVGMTEAEARKSG 368 (463)
T ss_pred eecCCCcc----------cHHHHHHHHHHHHHHHhCCCCCCcccccCCe--EE-EcCCC------cEeeeCCHHHHHHcC
Confidence 99987532 23458999999999998643333 334554 22 32221 344554321
Q ss_pred -cEEE--E--c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHH
Q 012165 394 -ETIE--I--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEA 455 (469)
Q Consensus 394 -~~~~--~--~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~ 455 (469)
++.. . . +....+.|++++ +++|+|+++++.++.++.. +..+++.+.+++. ..++.|||++|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 448 (463)
T PRK06370 369 RRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSEL 448 (463)
T ss_pred CCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHH
Confidence 1110 0 0 111236777775 5999999987777766554 4556788888773 334789999999
Q ss_pred HHHHHhcCCc
Q 012165 456 LEIARAALPV 465 (469)
Q Consensus 456 ~~~~~~~~~~ 465 (469)
++.|++++.+
T Consensus 449 ~~~a~~~~~~ 458 (463)
T PRK06370 449 IPTLAQALRR 458 (463)
T ss_pred HHHHHHhhhh
Confidence 9999987643
No 11
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=1.8e-41 Score=359.28 Aligned_cols=332 Identities=21% Similarity=0.250 Sum_probs=239.4
Q ss_pred cccccccccccccccccCCCCcccccc--cCCcccccccccccc-------c--cc-CCCCCCcEEEEcCcHHHHHHHHH
Q 012165 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA-------Y--SS-FANENREFVIVGGGNAAGYAART 69 (469)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~--~~-~~~~~~~vvIIGgG~AGl~aA~~ 69 (469)
..++||||.+||++|+++|+..|.|.. .+++++.+.|...+. . .+ .....++|+||||||||++||.+
T Consensus 478 I~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~ 557 (1019)
T PRK09853 478 IYQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYF 557 (1019)
T ss_pred HHHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHH
Confidence 357899999999999999999999976 889999888876432 1 12 12457899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (469)
Q Consensus 70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~ 149 (469)
|++.|+ +|+|+|+++.++.. +. +..+. .+++. +...+..+++.+.|+++++++.+ .+
T Consensus 558 Lar~G~---~VtV~Ek~~~~GG~---lr--~~IP~----~Rlp~-------evL~~die~l~~~GVe~~~gt~V-di--- 614 (1019)
T PRK09853 558 LARAGH---PVTVFEREENAGGV---VK--NIIPQ----FRIPA-------ELIQHDIEFVKAHGVKFEFGCSP-DL--- 614 (1019)
T ss_pred HHHcCC---eEEEEecccccCcc---ee--eeccc----ccccH-------HHHHHHHHHHHHcCCEEEeCcee-EE---
Confidence 999998 79999998764321 00 11111 11110 00123346778889999998665 22
Q ss_pred CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecC-HHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHh
Q 012165 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD-VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228 (469)
Q Consensus 150 ~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~ 228 (469)
.+++.....||+||||||+++...+.++|.+ +++++..+ +.+..........+++|+|||||.+|+|+|..+.+
T Consensus 615 ----~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~R 689 (1019)
T PRK09853 615 ----TVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR 689 (1019)
T ss_pred ----EhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHh
Confidence 2233344679999999999865444555543 44443221 11111222334568999999999999999999887
Q ss_pred CC--CeEe---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcE----------------EEEEcCCCCEE
Q 012165 229 WK--LDTT---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRV----------------AAVKLEDGSTI 275 (469)
Q Consensus 229 ~g--~~v~---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v----------------~~v~~~~g~~i 275 (469)
.+ .+|+ .+.+. .+.||+++.+..+.++.. ++++ ..+...+++++
T Consensus 690 lgGakeVTLVyRr~~~~MPA~~eEle~A-leeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I 766 (1019)
T PRK09853 690 VPGVEKVTVVYRRTKQEMPAWREEYEEA-LEDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTL 766 (1019)
T ss_pred cCCCceEEEEEccCcccccccHHHHHHH-HHcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEE
Confidence 74 3666 12222 357999999988888862 2322 12233445689
Q ss_pred eCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHH
Q 012165 276 DADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 354 (469)
Q Consensus 276 ~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~ 354 (469)
++|.||+|+|.+|++++++..|+..+ +|++.||++++|+.|+|||+|||+..+. .+..|+.+|+.+|++
T Consensus 767 ~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~----------tvv~Ai~qGr~AA~n 836 (1019)
T PRK09853 767 EADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPS----------TIVAAIADARRAADA 836 (1019)
T ss_pred EeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCch----------HHHHHHHHHHHHHHH
Confidence 99999999999999999998888765 5789999999999999999999987543 455799999999999
Q ss_pred HhcCCCCCCCCCCceeeecc
Q 012165 355 LLSAQTHTYDYLPYFYSRVF 374 (469)
Q Consensus 355 i~~~~~~~~~~~p~~~~~~~ 374 (469)
|++.....+...|+||++.+
T Consensus 837 I~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 837 ILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred HhhhcCCCcccccccccccc
Confidence 99766667888888888655
No 12
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=8.1e-40 Score=333.92 Aligned_cols=385 Identities=18% Similarity=0.259 Sum_probs=262.1
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-cccccC--------CCCCCCCCCC---
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYLF--------PLDKKPARLP--- 112 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~---~~l-~~~~~~--------~~~~~~~~~~--- 112 (469)
.+.++||+|||||+||++||..|++.|. +|+|||+.+..+... ... ++.+.. ........++
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~---~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~ 78 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGK---RVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL 78 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---EEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence 4567999999999999999999999987 899999865443211 001 111000 0000000000
Q ss_pred --CCccccC------CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCCCCC
Q 012165 113 --GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 182 (469)
Q Consensus 113 --~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~g 182 (469)
.+..... ........+++++.+++++.+ ++..++....+|...+|. ++.||+||||||++|.. |+.++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~~ 156 (461)
T PRK05249 79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDVD 156 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCCC
Confidence 0000000 000011233456789999986 677777766667766664 69999999999999974 44444
Q ss_pred CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG 244 (469)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g 244 (469)
...+++++ ++.+......+++++|||+|++|+|+|..|+++|.+|+ .+.+.+++.|
T Consensus 157 ~~~~~v~~------~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~g 230 (461)
T PRK05249 157 FDHPRIYD------SDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSG 230 (461)
T ss_pred CCCCeEEc------HHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcC
Confidence 33344432 33333334568999999999999999999999999988 3456778899
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165 245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI 321 (469)
Q Consensus 245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~ 321 (469)
|++++++.+++++..++ .+ .+.+++|+++++|.||+|+|++||+++ +++.++..+ +|++.||+++||+.|+|||+
T Consensus 231 I~v~~~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAi 308 (461)
T PRK05249 231 VTIRHNEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAV 308 (461)
T ss_pred CEEEECCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEe
Confidence 99999999999985433 33 466778889999999999999999885 577888875 57799999999999999999
Q ss_pred ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC-------
Q 012165 322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 393 (469)
Q Consensus 322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~------- 393 (469)
|||+..+. ....|..+|+.+|.+|++... ..+..+|. .+|..+. +..+|.+..
T Consensus 309 GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~---~i~~~p~------ia~vG~te~~a~~~g~ 369 (461)
T PRK05249 309 GDVIGFPS----------LASASMDQGRIAAQHAVGEATAHLIEDIPT---GIYTIPE------ISSVGKTEQELTAAKV 369 (461)
T ss_pred eecCCCcc----------cHhHHHHHHHHHHHHHcCCCcccccCCCCe---EEECCCc------ceEecCCHHHHHHcCC
Confidence 99997543 344699999999999996432 23345554 3444321 334444321
Q ss_pred cE-------------EEEccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHH
Q 012165 394 ET-------------IEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEA 455 (469)
Q Consensus 394 ~~-------------~~~~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~ 455 (469)
+. ...+ ....+.|++++ +++|+|++++++++.++.. +..+|+.+.+++. ..++.|||+.|+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~ 448 (461)
T PRK05249 370 PYEVGRARFKELARAQIAG-DNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEA 448 (461)
T ss_pred CeEEEEEccccccceeecC-CCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHH
Confidence 00 1111 11236777764 5899999998887766554 4556788887763 334678999999
Q ss_pred HHHHHhcCCc
Q 012165 456 LEIARAALPV 465 (469)
Q Consensus 456 ~~~~~~~~~~ 465 (469)
++.|++++.+
T Consensus 449 ~~~~~~~~~~ 458 (461)
T PRK05249 449 YRVAALDGLN 458 (461)
T ss_pred HHHHHHHHhc
Confidence 9999876654
No 13
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.1e-39 Score=332.69 Aligned_cols=385 Identities=18% Similarity=0.267 Sum_probs=258.1
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-cccccC--------CCCC----CCCCC
Q 012165 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLF--------PLDK----KPARL 111 (469)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~l-~~~~~~--------~~~~----~~~~~ 111 (469)
|....+||+|||||+||++||..|++.|. +|+|||++..-+ .++-.. ++.++. .... .....
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~---~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~ 78 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGA---RVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQA 78 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCC
Confidence 44567999999999999999999999987 799999874211 000000 111100 0000 00000
Q ss_pred CCC--ccccC------CCCCC-CCHhHHHH-CCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCC
Q 012165 112 PGF--HTCVG------SGGER-QTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPE 179 (469)
Q Consensus 112 ~~~--~~~~~------~~~~~-~~~~~~~~-~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~ 179 (469)
+.+ ..... ..... .....+++ .+++++.+ ++..+|.+..+|++.+| .+++||+||||||++|+ .|+
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~-~p~ 156 (468)
T PRK14694 79 PVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA-EPP 156 (468)
T ss_pred CccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC-CCC
Confidence 000 00000 00000 01122333 38999886 79999998888988877 36999999999999997 566
Q ss_pred CCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHHHHH
Q 012165 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQ 242 (469)
Q Consensus 180 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~l~~ 242 (469)
++|.+...+.+. .+...+ ...+++++|||+|++|+|+|..|.++|.+++ .+++.+++
T Consensus 157 i~G~~~~~~~~~---~~~~~l---~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~ 230 (468)
T PRK14694 157 VPGLAETPYLTS---TSALEL---DHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRR 230 (468)
T ss_pred CCCCCCCceEcc---hhhhch---hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHh
Confidence 666432222221 222222 2347899999999999999999999999987 45677888
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh--hhcCCcccCCCEEeCCCCCCCCCceEE
Q 012165 243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFA 320 (469)
Q Consensus 243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~Vd~~~~t~~~~Vfa 320 (469)
.||++++++.+.+++.+ ++.+ .+.+.++ ++++|.||+++|.+||++++ ++++++.++|+|.||+++||++|+|||
T Consensus 231 ~GI~v~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA 307 (468)
T PRK14694 231 EGIEVLKQTQASEVDYN-GREF-ILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYA 307 (468)
T ss_pred CCCEEEeCCEEEEEEEc-CCEE-EEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEEE
Confidence 99999999999999854 3322 3555444 79999999999999999874 667887777889999999999999999
Q ss_pred eccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC------
Q 012165 321 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------ 393 (469)
Q Consensus 321 ~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~------ 393 (469)
+|||+..+. ....|..+|+.+|.||++... ..+..+|.+ ..++.+ +..+|.+..
T Consensus 308 ~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~~g 368 (468)
T PRK14694 308 AGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQ-------VATVGLSEAEAQAQG 368 (468)
T ss_pred EeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCC-------eEEeeCCHHHHHHcC
Confidence 999997543 344588999999999986432 223445543 222221 445565421
Q ss_pred -cE--EEE----------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh-hh-hcCCCcHHHH
Q 012165 394 -ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEA 455 (469)
Q Consensus 394 -~~--~~~----------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~ 455 (469)
+. ... ......|.|++++ +++|+|+++++.++.++.. +..+|+.+.+++. .. .+.|||++|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 448 (468)
T PRK14694 369 YDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEG 448 (468)
T ss_pred CceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHH
Confidence 11 000 0011236777764 5999999987777766554 4556788888773 33 4679999999
Q ss_pred HHHHHhcCC
Q 012165 456 LEIARAALP 464 (469)
Q Consensus 456 ~~~~~~~~~ 464 (469)
++.|+..+.
T Consensus 449 ~~~~~~~~~ 457 (468)
T PRK14694 449 LKLCAQTFT 457 (468)
T ss_pred HHHHHHhhh
Confidence 999888653
No 14
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.5e-41 Score=341.27 Aligned_cols=321 Identities=21% Similarity=0.212 Sum_probs=236.9
Q ss_pred ccccccccccccccccc--CCCCcccccc--cCCcccccccccccc------c--ccCCCCCCcEEEEcCcHHHHHHHHH
Q 012165 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVA------Y--SSFANENREFVIVGGGNAAGYAART 69 (469)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~------~--~~~~~~~~~vvIIGgG~AGl~aA~~ 69 (469)
..++||||.+||++|++ +|+..|+|.. .++++..+.|+..+. . .+.....++|+||||||||++||.+
T Consensus 79 ~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~ 158 (464)
T PRK12831 79 IAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGD 158 (464)
T ss_pred HHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHH
Confidence 35789999999999998 9999999987 889998888876642 1 1233567899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (469)
Q Consensus 70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~ 149 (469)
|+++|+ +|+|+|+++.++.. +. +-.+ ..+++.. .......+++++.|+++++++.+
T Consensus 159 l~~~G~---~V~v~e~~~~~GG~---l~--~gip----~~~l~~~------~~~~~~~~~~~~~gv~i~~~~~v------ 214 (464)
T PRK12831 159 LAKMGY---DVTIFEALHEPGGV---LV--YGIP----EFRLPKE------TVVKKEIENIKKLGVKIETNVVV------ 214 (464)
T ss_pred HHhCCC---eEEEEecCCCCCCe---ee--ecCC----CccCCcc------HHHHHHHHHHHHcCCEEEcCCEE------
Confidence 999987 79999987653211 00 0000 0111110 00122346778899999998644
Q ss_pred CcEEEeCCC-eEEEeccEEeccCC-CCCcCCCCCCCCcCcEEEecCHHHHHHHHH--------hhhcCCeEEEEcCChHH
Q 012165 150 KQTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIG 219 (469)
Q Consensus 150 ~~~v~~~~g-~~~~yd~lVlAtG~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g 219 (469)
.+.+++++. +.+.||+||||||+ .|+ .+.++|.+.+++++..++.+...+.. ....+++|+|||+|++|
T Consensus 215 ~~~v~~~~~~~~~~~d~viiAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va 293 (464)
T PRK12831 215 GKTVTIDELLEEEGFDAVFIGSGAGLPK-FMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVA 293 (464)
T ss_pred CCcCCHHHHHhccCCCEEEEeCCCCCCC-CCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHH
Confidence 223333332 23579999999998 576 45678888888887665544322211 12467999999999999
Q ss_pred HHHHHHHHhCCCeEee------------eH--HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------------
Q 012165 220 MEVAAAAVGWKLDTTR------------YE--QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------------- 270 (469)
Q Consensus 220 ~e~A~~l~~~g~~v~~------------~~--~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--------------- 270 (469)
+|+|..+.++|.+|+. .. +.+++.||++++++.+.++..++++++.++++.
T Consensus 294 ~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~ 373 (464)
T PRK12831 294 MDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRP 373 (464)
T ss_pred HHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccc
Confidence 9999999999999871 11 246678999999999999976556776655542
Q ss_pred ---CCC--EEeCCEEEEccCCccCCchhhh-cCCccc-CCCEEeCCC-CCCCCCceEEeccccccCCccCCcccccchHH
Q 012165 271 ---DGS--TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 342 (469)
Q Consensus 271 ---~g~--~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~Vd~~-~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~ 342 (469)
+|+ ++++|.||+++|..|++.++.. .|+..+ +|+|.||++ ++|+.|+|||+|||+..+. .+.
T Consensus 374 ~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~----------~v~ 443 (464)
T PRK12831 374 VEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA----------TVI 443 (464)
T ss_pred eecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch----------HHH
Confidence 222 6999999999999999888776 677765 578999987 9999999999999987532 455
Q ss_pred HHHHHHHHHHHHHhc
Q 012165 343 HARQSAQHCIKALLS 357 (469)
Q Consensus 343 ~A~~~a~~~a~~i~~ 357 (469)
.|+.+|+.+|.+|..
T Consensus 444 ~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 444 LAMGAGKKAAKAIDE 458 (464)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788999999988853
No 15
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=5.7e-40 Score=333.68 Aligned_cols=374 Identities=20% Similarity=0.288 Sum_probs=253.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-cccccC-----------------CCCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLF-----------------PLDKKPA 109 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~l-~~~~~~-----------------~~~~~~~ 109 (469)
..+||+||||||||++||..|+++|. +|+|||++..-+ .++-.+ +|.++. .......
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~---~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGA---KVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 35899999999999999999999987 799999863211 011111 110000 0000000
Q ss_pred CCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165 110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (469)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~ 186 (469)
++..+.... -..........+.+.+++++.+ ++..++. ++|++ +++++.||+||||||++|. .|.++|. +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~~--~~v~~-~g~~~~~d~lViATGs~p~-~p~i~g~--~ 152 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVDA--HTVEV-NGERYTADHILIATGGRPS-IPDIPGA--E 152 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccC--CEEEE-CCEEEEeCEEEEecCCCCC-CCCCCCc--c
Confidence 110000000 0000011123355679999986 6666664 57777 6778999999999999986 4555542 1
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV 248 (469)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~ 248 (469)
...+ .+.+......+++++|||+|.+|+|+|..|.++|.+++ .+.+.+++.||+++
T Consensus 153 ---~~~~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~ 226 (450)
T PRK06116 153 ---YGIT---SDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLH 226 (450)
T ss_pred ---eeEc---hhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEE
Confidence 1211 22222223457899999999999999999999999987 34567889999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEecccc
Q 012165 249 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 325 (469)
Q Consensus 249 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a 325 (469)
+++++.+++.++++.+ .+.+.+|+++++|.||+++|.+|+++. ++..+++.+ +|+|.||+++||++|||||+|||+
T Consensus 227 ~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~ 305 (450)
T PRK06116 227 TNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVT 305 (450)
T ss_pred CCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecC
Confidence 9999999986544433 477788989999999999999999985 577888875 567999999999999999999998
Q ss_pred ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCC-------c-
Q 012165 326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E- 394 (469)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~- 394 (469)
..+. ....|..+|+.+|+||++... ..|..+|+ ..|+++. +..+|.+.. +
T Consensus 306 ~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~------~a~vGlte~~a~~~~~~~ 366 (450)
T PRK06116 306 GRVE----------LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPP------IGTVGLTEEEAREQYGED 366 (450)
T ss_pred CCcC----------cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCc------cEEeeCCHHHHHHhCCCC
Confidence 6432 345699999999999997433 23455664 4455432 344554321 1
Q ss_pred -EEE-Ecc-----------CCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165 395 -TIE-IGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEAL 456 (469)
Q Consensus 395 -~~~-~~~-----------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 456 (469)
... ... ....+.|++++ +++|+|+++++.++.++.. +..+|+.+.+++. ..++.|||++|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T PRK06116 367 NVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEF 446 (450)
T ss_pred cEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHH
Confidence 111 100 11236777774 5999999987777765544 5556788888762 3347899999999
Q ss_pred HHH
Q 012165 457 EIA 459 (469)
Q Consensus 457 ~~~ 459 (469)
..+
T Consensus 447 ~~~ 449 (450)
T PRK06116 447 VTM 449 (450)
T ss_pred hhc
Confidence 876
No 16
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=4.3e-41 Score=340.13 Aligned_cols=317 Identities=21% Similarity=0.225 Sum_probs=236.4
Q ss_pred cccccccccccccccc--CCCCcccccc------cCCcccccccccccc---------cccCCCCCCcEEEEcCcHHHHH
Q 012165 3 SVSNSLSFKHGLSLWC--PQSPSLHRIR------HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGY 65 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~---------~~~~~~~~~~vvIIGgG~AGl~ 65 (469)
.++||||.+||++|++ +|+..|.+.. .++++..+.|+..+. ..+.....++|+|||||+||++
T Consensus 68 ~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~ 147 (449)
T TIGR01316 68 KTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLA 147 (449)
T ss_pred HHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHH
Confidence 5789999999999999 9999998642 678888888866432 1123345789999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEE
Q 012165 66 AARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTS 145 (469)
Q Consensus 66 aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 145 (469)
+|..|++.|+ +|+|+|+++.+... +. +-.+. .+++. +......+++++.+++++++..+
T Consensus 148 aA~~l~~~G~---~V~vie~~~~~GG~---l~--~gip~----~~~~~-------~~~~~~~~~l~~~gv~~~~~~~v-- 206 (449)
T TIGR01316 148 CASELAKAGH---SVTVFEALHKPGGV---VT--YGIPE----FRLPK-------EIVVTEIKTLKKLGVTFRMNFLV-- 206 (449)
T ss_pred HHHHHHHCCC---cEEEEecCCCCCcE---ee--ecCCC----ccCCH-------HHHHHHHHHHHhCCcEEEeCCcc--
Confidence 9999999987 79999998654211 00 00000 01110 00122345677889999998543
Q ss_pred EeCCCcEEEeCCCeEEEeccEEeccCC-CCCcCCCCCCCCcCcEEEecCHHHHHHHHH---------hhhcCCeEEEEcC
Q 012165 146 IDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGG 215 (469)
Q Consensus 146 id~~~~~v~~~~g~~~~yd~lVlAtG~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---------~~~~~~~vvVvG~ 215 (469)
.+.+++++.. ..||+||||||+ .|+ .+.++|.+.+++++..++.+...+.. ....+++++|||+
T Consensus 207 ----~~~v~~~~~~-~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGg 280 (449)
T TIGR01316 207 ----GKTATLEELF-SQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGG 280 (449)
T ss_pred ----CCcCCHHHHH-hhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECC
Confidence 2344444332 579999999998 565 56678887888877655443322221 1235789999999
Q ss_pred ChHHHHHHHHHHhCCCeEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------CC
Q 012165 216 GYIGMEVAAAAVGWKLDTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG 272 (469)
Q Consensus 216 G~~g~e~A~~l~~~g~~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------~g 272 (469)
|.+|+|+|..+.++|.+|+ ...+.+++.||++++++.+.++..++++++..|++. +|
T Consensus 281 G~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g 360 (449)
T TIGR01316 281 GNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSG 360 (449)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCC
Confidence 9999999999999999987 112457889999999999999976556666666543 23
Q ss_pred -----------CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccch
Q 012165 273 -----------STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 340 (469)
Q Consensus 273 -----------~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~ 340 (469)
+++++|.||+++|..|++.+++..+++.+ +|+|.||++++|+.|+|||+|||+..+. .
T Consensus 361 ~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~----------~ 430 (449)
T TIGR01316 361 ERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA----------T 430 (449)
T ss_pred CeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH----------H
Confidence 26999999999999999988888888876 5789999999999999999999986432 5
Q ss_pred HHHHHHHHHHHHHHHh
Q 012165 341 VDHARQSAQHCIKALL 356 (469)
Q Consensus 341 ~~~A~~~a~~~a~~i~ 356 (469)
+..|+.+|+.+|.+|.
T Consensus 431 v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 431 VIRAMGQGKRAAKSIN 446 (449)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6679999999999985
No 17
>PLN02507 glutathione reductase
Probab=100.00 E-value=4.3e-39 Score=328.90 Aligned_cols=379 Identities=19% Similarity=0.240 Sum_probs=256.7
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCCC---CCCC-cccccCC------------
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPYE---RPAL-TKGYLFP------------ 103 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~---------~~~~~~---~~~l-~~~~~~~------------ 103 (469)
..+||++||||||||+.||..++++|. +|+|||+. ..++.. +-.. +|.++..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~---~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~ 99 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGA---KVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKN 99 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHh
Confidence 446899999999999999999999987 79999962 111111 0011 1211100
Q ss_pred --CC---CCCCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCC
Q 012165 104 --LD---KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCT 173 (469)
Q Consensus 104 --~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~ 173 (469)
.. ....++..+.... -..........+...+++++.+ ++..+++...+|++.+|+ ++.||+||||||++
T Consensus 100 ~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 100 YGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence 00 0000000000000 0000001123345579999986 888899888888888876 58899999999999
Q ss_pred CCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------e
Q 012165 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------R 235 (469)
Q Consensus 174 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~ 235 (469)
|. .|.++|.+ . ..+..+...+ ...+++++|||+|++|+|+|..+.++|.+|+ .
T Consensus 179 p~-~p~ipG~~--~---~~~~~~~~~l---~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~ 249 (499)
T PLN02507 179 AQ-RPNIPGKE--L---AITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAV 249 (499)
T ss_pred CC-CCCCCCcc--c---eechHHhhhh---hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHH
Confidence 87 45555532 1 1222333332 2357899999999999999999999999988 3
Q ss_pred eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCC
Q 012165 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFR 312 (469)
Q Consensus 236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~ 312 (469)
+.+.|++.||++++++++++++..+ +.+ .+.+.+|+++++|.|++++|++||+++ +++++++.+ +|+|.||+++|
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~ 327 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSR 327 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCc
Confidence 4567889999999999999998543 333 467778889999999999999999987 678888875 57799999999
Q ss_pred CCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEeec
Q 012165 313 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGD 390 (469)
Q Consensus 313 t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~ 390 (469)
|++|||||+|||+..+. ....|..||+.+++||+++... .+..+|+ ..|+++- +..+|.
T Consensus 328 Ts~p~IyAiGDv~~~~~----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~---~if~~p~------ia~vGl 388 (499)
T PLN02507 328 TNIPSIWAIGDVTNRIN----------LTPVALMEGTCFAKTVFGGQPTKPDYENVAC---AVFCIPP------LSVVGL 388 (499)
T ss_pred CCCCCEEEeeEcCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCe---EEECCCc------cEEEeC
Confidence 99999999999997432 3446999999999999865332 2344553 4555432 334444
Q ss_pred CCC--------cEEE------------EccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hh
Q 012165 391 NVG--------ETIE------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AK 445 (469)
Q Consensus 391 ~~~--------~~~~------------~~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~ 445 (469)
+.. +... .+.....+.|++++ +++|+|+++++.++.++.. +..+|+.+.+++. ..
T Consensus 389 te~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~ 468 (499)
T PLN02507 389 SEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDST 468 (499)
T ss_pred CHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence 321 1100 01111236777764 5899999987777755444 4556788887763 33
Q ss_pred hcCCCcHHHHHHHHHh
Q 012165 446 LQQASSVEEALEIARA 461 (469)
Q Consensus 446 ~~~~~~~~~~~~~~~~ 461 (469)
++.|||++|.+..++.
T Consensus 469 ~~~hPt~~E~~~~~~~ 484 (499)
T PLN02507 469 VGIHPSAAEEFVTMRS 484 (499)
T ss_pred CcCCCChHHHHHHHHh
Confidence 4789999999998763
No 18
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=7.3e-40 Score=331.87 Aligned_cols=373 Identities=18% Similarity=0.257 Sum_probs=251.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccCC--------------C--CCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFP--------------L--DKKPAR 110 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~~--------------~--~~~~~~ 110 (469)
+|||+||||||||++||..++++|. +|+|+|++. ++.. +-.. +|.++.. . .....+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGA---KVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD 77 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence 5899999999999999999999998 799999853 2211 0011 1111000 0 000000
Q ss_pred CCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCc
Q 012165 111 LPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (469)
Q Consensus 111 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~ 187 (469)
+...... .-..........+++.+++++.+ ++..++++...+. .+|+++.||+||||||++|. .|.++|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~-~p~i~G~~--- 151 (446)
T TIGR01424 78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQ-KPNLPGHE--- 151 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCC-CCCCCCcc---
Confidence 0000000 00000112234456789999886 8888887644443 45778999999999999986 45555532
Q ss_pred EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEc
Q 012165 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVK 249 (469)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~ 249 (469)
...+ .+........+++++|||+|++|+|+|..++++|.+++ .+.+.+++.||++++
T Consensus 152 --~~~~---~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~ 226 (446)
T TIGR01424 152 --LGIT---SNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHP 226 (446)
T ss_pred --ceec---hHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEe
Confidence 1111 12222222357899999999999999999999999887 345667889999999
Q ss_pred CCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccc
Q 012165 250 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 326 (469)
Q Consensus 250 ~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~ 326 (469)
++.+++++..+++ + .+.+.+|+++++|.||+|+|.+||++. +++.+++.+ +|+|.||+++||++|||||+|||+.
T Consensus 227 ~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~ 304 (446)
T TIGR01424 227 QTSLTSITKTDDG-L-KVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTD 304 (446)
T ss_pred CCEEEEEEEcCCe-E-EEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCC
Confidence 9999999854333 2 466778889999999999999999875 578888765 5779999999999999999999996
Q ss_pred cCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCC--CCCCceeeecccccCCCcceeeEEeecCCC--------cEE
Q 012165 327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ETI 396 (469)
Q Consensus 327 ~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~~ 396 (469)
.+. ....|..+|+.+++||+++...++ ..+|+ ..|+.+. +..+|.+.. +..
T Consensus 305 ~~~----------l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~---~if~~p~------ia~vG~te~~a~~~~~~~~~ 365 (446)
T TIGR01424 305 RIN----------LTPVAIMEATCFANTEFGNNPTKFDHDLIAT---AVFSQPP------LGTVGLTEEEAREKFTGDIL 365 (446)
T ss_pred Ccc----------chhHHHHHHHHHHHHHhcCCCCccCcCCCCe---EEeCCch------hEEEECCHHHHHhhcCCCEE
Confidence 432 334599999999999997443333 45554 3454331 334454321 110
Q ss_pred -EE-----------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHHHH
Q 012165 397 -EI-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALEIA 459 (469)
Q Consensus 397 -~~-----------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 459 (469)
.. ......+.|+.++ +++|+|+++++.++.++.. +..+|+.+.+++. ..++.|||+.|++..+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 366 VYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred EEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 00 1111236777774 5999999998877766554 4556788888773 3347899999998765
No 19
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=2.7e-39 Score=327.41 Aligned_cols=374 Identities=21% Similarity=0.282 Sum_probs=248.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-cccccCC--------------CCCC---CCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYLFP--------------LDKK---PAR 110 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~l-~~~~~~~--------------~~~~---~~~ 110 (469)
++||+||||||||++||..+++.|. +|+|||++..-+- ++-.. +|.++.. .... ..+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGA---KALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC---cEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 5899999999999999999999997 7999998642210 00111 1111100 0000 000
Q ss_pred CCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCc
Q 012165 111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (469)
Q Consensus 111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~ 187 (469)
++.+.... -..........+++.+++++.++.+ . .+.++|.+ +++.+.||+||||||++|+.++.++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~-~--~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~--- 151 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR-F--TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE--- 151 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-E--ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc---
Confidence 00000000 0000001223355679999987443 2 23556766 4667999999999999987432555532
Q ss_pred EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEc
Q 012165 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVK 249 (469)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~ 249 (469)
... +.+.+......+++++|||+|++|+|+|..|+.+|.+|+ .+.+.|++.||++++
T Consensus 152 --~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~ 226 (450)
T TIGR01421 152 --LGT---DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHK 226 (450)
T ss_pred --eeE---cHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEc
Confidence 111 123333333457999999999999999999999999998 345678889999999
Q ss_pred CCeEEEEEeCCCCcEEEEEcCCC-CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEecccc
Q 012165 250 GASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 325 (469)
Q Consensus 250 ~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a 325 (469)
++.+++++.++++.+ .+.+++| +.+++|.||+++|++||+++ ++..+++.+ +|++.||+++||++|+|||+|||+
T Consensus 227 ~~~v~~i~~~~~~~~-~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~ 305 (450)
T TIGR01421 227 LSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVV 305 (450)
T ss_pred CCEEEEEEEeCCceE-EEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecC
Confidence 999999986433323 5677778 57999999999999999985 578888875 577999999999999999999999
Q ss_pred ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCCc--------
Q 012165 326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------- 394 (469)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------- 394 (469)
..+. ....|..+|+.+|++|+++.. ..+..+|+ ..|..+- +..+|....+
T Consensus 306 ~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~f~~p~------ia~vGlte~~a~~~~g~~ 366 (450)
T TIGR01421 306 GKVE----------LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT---VVFSHPP------IGTIGLTEKEAIEKYGKE 366 (450)
T ss_pred CCcc----------cHHHHHHHHHHHHHHHhcCCCCCccCcccCCe---EEeCCCc------eEEEeCCHHHHHhhcCCC
Confidence 7543 345699999999999986432 23455664 3344322 3334433210
Q ss_pred -EE-EEc-----------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165 395 -TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEAL 456 (469)
Q Consensus 395 -~~-~~~-----------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 456 (469)
.. ... +...-+.|+.++ +++|+|+++++.++.++.. +..+|+.+.+++. ..++.|||+.|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T TIGR01421 367 NIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEEL 446 (450)
T ss_pred CEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHH
Confidence 10 000 011225666664 6999999998877766554 4556788888773 2346899999998
Q ss_pred HHH
Q 012165 457 EIA 459 (469)
Q Consensus 457 ~~~ 459 (469)
..+
T Consensus 447 ~~~ 449 (450)
T TIGR01421 447 VTM 449 (450)
T ss_pred hhc
Confidence 765
No 20
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.3e-39 Score=329.71 Aligned_cols=385 Identities=16% Similarity=0.239 Sum_probs=252.7
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCC-cccccC---------C-------CCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPAL-TKGYLF---------P-------LDKKP 108 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~---~~~~l-~~~~~~---------~-------~~~~~ 108 (469)
+.++||+|||||+||++||..|++.|. +|+|||+.+.++. ++..+ +|.++. . .....
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPK 78 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence 346999999999999999999999987 7999998654331 11111 111110 0 00000
Q ss_pred CCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCCCCCC
Q 012165 109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG 183 (469)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~~~g~ 183 (469)
.++..+.... -..........+++.+++++.+ ++..++.....|...+| .++.||+||||||++|+.+|.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~- 156 (471)
T PRK06467 79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH- 156 (471)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-
Confidence 0110000000 0000001123356679999986 55556654444555566 469999999999999975555443
Q ss_pred CcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCc
Q 012165 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGV 245 (469)
Q Consensus 184 ~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV 245 (469)
+.+++.+. .+. ......+++++|||+|++|+|+|..|.++|.+|+ .+.+.+++. |
T Consensus 157 ~~~~v~~~---~~~---~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v 229 (471)
T PRK06467 157 DDPRIWDS---TDA---LELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-F 229 (471)
T ss_pred CCCcEECh---HHh---hccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-e
Confidence 23333322 222 2223457999999999999999999999999998 345667777 9
Q ss_pred EEEcCCeEEEEEeCCCCcEEEEEcCC--C--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCce
Q 012165 246 KFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 318 (469)
Q Consensus 246 ~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~V 318 (469)
++++++.+++++..+++ + .+.+.+ + +++++|.||+++|++||+++ ++..+++.+ +|+|.||+++||++|+|
T Consensus 230 ~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~V 307 (471)
T PRK06467 230 NIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHI 307 (471)
T ss_pred EEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCE
Confidence 99999999999854333 3 355443 2 46999999999999999985 467788875 57799999999999999
Q ss_pred EEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC----
Q 012165 319 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 393 (469)
Q Consensus 319 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---- 393 (469)
||+|||+..+. ....|..+|+.+|.+|++... ..+...|+. . |..+. +..+|.+..
T Consensus 308 yAiGDv~~~~~----------la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~-~~~p~------ia~vGlte~ea~~ 368 (471)
T PRK06467 308 FAIGDIVGQPM----------LAHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--A-YTEPE------VAWVGLTEKEAKE 368 (471)
T ss_pred EEehhhcCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--E-ECCCc------eeEEECCHHHHHh
Confidence 99999986442 345699999999999986432 223445642 2 33221 444554321
Q ss_pred ---cEE--EE--c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHH
Q 012165 394 ---ETI--EI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVE 453 (469)
Q Consensus 394 ---~~~--~~--~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~ 453 (469)
+.. .. . +....|.|++++ +++|+|+++++.++.++.. +..+|+.+.+++. ..+..||++.
T Consensus 369 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~ 448 (471)
T PRK06467 369 EGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLH 448 (471)
T ss_pred cCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChH
Confidence 110 00 0 011236777774 5899999998888766554 4556788877762 2246899999
Q ss_pred HHHHHHHhcCCcc
Q 012165 454 EALEIARAALPVE 466 (469)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (469)
|+++.|++++..+
T Consensus 449 e~~~~a~~~~~~~ 461 (471)
T PRK06467 449 ESVGLAAEAFEGS 461 (471)
T ss_pred HHHHHHHHhhcCC
Confidence 9999999876554
No 21
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.7e-39 Score=327.62 Aligned_cols=383 Identities=23% Similarity=0.313 Sum_probs=255.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCC-CcccccCCC------------C----CCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPA-LTKGYLFPL------------D----KKPAR 110 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~-l~~~~~~~~------------~----~~~~~ 110 (469)
..+|++||||||||++||..|+++|. +|+|+|++..-+. +... .+|.++... . ....+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 45899999999999999999999987 7999998762110 1111 122111000 0 00000
Q ss_pred CCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCC-CeEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165 111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (469)
Q Consensus 111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~-g~~~~yd~lVlAtG~~~~~~~~~~g~~~~ 186 (469)
+..+.... ...........+++.+++++.+ ++..+++...+|...+ ++++.||+||||||++|..+| |...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~p---g~~~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELP---GIEID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCC---CCCCC
Confidence 00000000 0000001223456789999986 6777776655665433 467999999999999986433 43333
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV 248 (469)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~ 248 (469)
+.. +.+..+... ....+++++|||+|++|+|+|..|.++|.+|+ .+.+.+++.||+++
T Consensus 156 ~~~-v~~~~~~~~---~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~ 231 (462)
T PRK06416 156 GRV-IWTSDEALN---LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIK 231 (462)
T ss_pred CCe-EEcchHhhC---ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 421 222223322 22357899999999999999999999999987 34567888999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEcCCC---CEEeCCEEEEccCCccCCchh--hhcCCcccCCCEEeCCCCCCCCCceEEecc
Q 012165 249 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 323 (469)
Q Consensus 249 ~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD 323 (469)
+++++++++.++ +.+ .+.+.+| +++++|.||+++|.+|+++++ ++.++..++|++.||+++||+.|+|||+||
T Consensus 232 ~~~~V~~i~~~~-~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD 309 (462)
T PRK06416 232 TGAKAKKVEQTD-DGV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIGD 309 (462)
T ss_pred eCCEEEEEEEeC-CEE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEeee
Confidence 999999998643 333 4566665 679999999999999999874 678887777789999999999999999999
Q ss_pred ccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeeecccccCCCcceeeEEeecCCCc-------
Q 012165 324 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------- 394 (469)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------- 394 (469)
|+..+. .+..|..||+.+|.||++. ..+++ .+|. ...++.+ +..+|.+..+
T Consensus 310 ~~~~~~----------~~~~A~~~g~~aa~ni~~~-~~~~~~~~~~~--~~~~~~~-------~a~vG~te~~a~~~g~~ 369 (462)
T PRK06416 310 IVGGPM----------LAHKASAEGIIAAEAIAGN-PHPIDYRGIPA--VTYTHPE-------VASVGLTEAKAKEEGFD 369 (462)
T ss_pred cCCCcc----------hHHHHHHHHHHHHHHHcCC-CCCCCCCCCCe--EEECCCc-------eEEEeCCHHHHHhcCCC
Confidence 997432 4556999999999999963 33333 3443 2333322 4455654221
Q ss_pred EEE-Ecc-----------CCCcEEEEEE--eCCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHH
Q 012165 395 TIE-IGN-----------FDPKIATFWI--DSGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALE 457 (469)
Q Consensus 395 ~~~-~~~-----------~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 457 (469)
... .-. ....+.|+.+ ++++|+|+++++.++.++.. +..+|+.+.+++. .. ...||++.|+++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 449 (462)
T PRK06416 370 VKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALG 449 (462)
T ss_pred eEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHH
Confidence 110 000 1123666666 36999999988877766554 4556788887762 22 467999999999
Q ss_pred HHHhcCCc
Q 012165 458 IARAALPV 465 (469)
Q Consensus 458 ~~~~~~~~ 465 (469)
.|++.+..
T Consensus 450 ~~~~~~~~ 457 (462)
T PRK06416 450 EAALAAAG 457 (462)
T ss_pred HHHHHhcc
Confidence 99876543
No 22
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.5e-39 Score=328.23 Aligned_cols=386 Identities=21% Similarity=0.287 Sum_probs=250.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccCCCC-----C--CCCCCCCCcccc
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFPLD-----K--KPARLPGFHTCV 118 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~~~~-----~--~~~~~~~~~~~~ 118 (469)
+++||+||||||||++||..++++|. +|+|||+...++.. +-.. +|.++.... . ...++ +.....
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~---~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~-gi~~~~ 77 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHL-GIEVKP 77 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhc-CccccC
Confidence 35899999999999999999999987 79999974333211 1111 111110000 0 00000 000000
Q ss_pred CCCCC--------------CCCHhHHHHCCcEEEeCCcEEEEeCCC-cEEEeCCCe--EEEeccEEeccCCCCCcCCCCC
Q 012165 119 GSGGE--------------RQTPEWYKEKGIEMIYQDPVTSIDIEK-QTLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (469)
Q Consensus 119 ~~~~~--------------~~~~~~~~~~~i~~~~~~~v~~id~~~-~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~ 181 (469)
..++. .....+++..+++++.+ +. .++... ..|.+.+|+ +++||+||||||++|.. +|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~---ip 152 (466)
T PRK06115 78 TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKG-WG-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP---LP 152 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EE-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC---CC
Confidence 00000 01122345568998886 33 333333 344455663 69999999999998853 34
Q ss_pred CCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHc
Q 012165 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQN 243 (469)
Q Consensus 182 g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~ 243 (469)
|...++...+. .+.+......+++++|||+|++|+|+|..+.++|.+|+ .+.+.|++.
T Consensus 153 g~~~~~~~~~~----~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~ 228 (466)
T PRK06115 153 GVTIDNQRIID----STGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQ 228 (466)
T ss_pred CCCCCCCeEEC----HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 44344543332 23333323467999999999999999999999999987 345678889
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEc-C--CCCEEeCCEEEEccCCccCCch--hhhcCCcccCCCEEeCCCCCCCCCce
Q 012165 244 GVKFVKGASIKNLEAGSDGRVAAVKL-E--DGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGI 318 (469)
Q Consensus 244 gV~~~~~~~v~~i~~~~~~~v~~v~~-~--~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~Vd~~~~t~~~~V 318 (469)
||++++++.+++++.++++....+.. . +++++++|.|++++|++||++. ++..++..+.+++.||+++||++|+|
T Consensus 229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~I 308 (466)
T PRK06115 229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGV 308 (466)
T ss_pred CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCCCE
Confidence 99999999999998643333222222 1 2357999999999999999985 56677777655688999999999999
Q ss_pred EEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC----
Q 012165 319 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 393 (469)
Q Consensus 319 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---- 393 (469)
||+|||+..+. ....|..||+.+|+||++... ..+..+|+. +|..+. +..+|.+..
T Consensus 309 yA~GD~~~~~~----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~---~~t~p~------ia~vGlte~~a~~ 369 (466)
T PRK06115 309 WVIGDVTSGPM----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGV---IYTRPE------VATVGKTEEQLKA 369 (466)
T ss_pred EEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE---EECCcc------cEEeeCCHHHHHH
Confidence 99999997542 334599999999999986432 234556652 333221 344554321
Q ss_pred ---cEEE-E---c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHH
Q 012165 394 ---ETIE-I---G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVE 453 (469)
Q Consensus 394 ---~~~~-~---~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~ 453 (469)
+... . . .....|.|++++ +++|+|+++++.++.++.. +..+|+.+.+++. ...+.|||+.
T Consensus 370 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~ 449 (466)
T PRK06115 370 EGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRS 449 (466)
T ss_pred CCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChH
Confidence 1110 0 0 001236777764 5899999987777766544 4556788887762 2346799999
Q ss_pred HHHHHHHhcCCccc
Q 012165 454 EALEIARAALPVEA 467 (469)
Q Consensus 454 ~~~~~~~~~~~~~~ 467 (469)
|.++.|++.+..++
T Consensus 450 e~~~~a~~~~~~~~ 463 (466)
T PRK06115 450 EALRQAAMNVEGWA 463 (466)
T ss_pred HHHHHHHHHHhcch
Confidence 99999998776543
No 23
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.6e-39 Score=312.49 Aligned_cols=279 Identities=23% Similarity=0.325 Sum_probs=219.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
++++|||||||++|+.+|..|.+.. ++.+||+||+.+++.|. |.|........+..... ....+.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~g~l~~~~i~-------------~p~~~~ 66 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVATGTLSESEIA-------------IPLRAL 66 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhcCCCChhhee-------------ccHHHH
Confidence 4689999999999999999999985 35689999999999876 55544221111111111 234555
Q ss_pred HHHCC-cEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhh---
Q 012165 130 YKEKG-IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--- 205 (469)
Q Consensus 130 ~~~~~-i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--- 205 (469)
+++.+ ++++.+ +|++||++.++|++.++..+.||+||+|+|+.+.. +.++|. .+..+.+.+++|+.+++..+.
T Consensus 67 ~~~~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~f 143 (405)
T COG1252 67 LRKSGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAF 143 (405)
T ss_pred hcccCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHH
Confidence 66444 999985 99999999999999998889999999999999874 455553 233467888888877766543
Q ss_pred -----cC-----CeEEEEcCChHHHHHHHHHHhCCC-------------eEe------------------eeHHHHHHcC
Q 012165 206 -----KA-----KKVVVVGGGYIGMEVAAAAVGWKL-------------DTT------------------RYEQLYQQNG 244 (469)
Q Consensus 206 -----~~-----~~vvVvG~G~~g~e~A~~l~~~g~-------------~v~------------------~~~~~l~~~g 244 (469)
.. .+++|+|||++|+|+|.+|+++-. ++. ..++.|++.|
T Consensus 144 e~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 144 EKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223 (405)
T ss_pred HHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCC
Confidence 12 269999999999999998875422 333 6678999999
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEcCCCCE-EeCCEEEEccCCccCCchhhh-cCCccc-CCCEEeCCCCCC-CCCceEE
Q 012165 245 VKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGIFA 320 (469)
Q Consensus 245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~Vd~~~~t-~~~~Vfa 320 (469)
|++++++.|++++++ +|++++|.+ |++|.+||++|.+++ +++++ .+++.+ .|++.||+++|+ ++|||||
T Consensus 224 V~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa 296 (405)
T COG1252 224 VEVLLGTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFA 296 (405)
T ss_pred CEEEcCCceEEECCC------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEE
Confidence 999999999999854 588888884 999999999999998 67787 477767 589999999998 8999999
Q ss_pred eccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165 321 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 321 ~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
+|||+..+.. .......+.|.+||..+|+||..
T Consensus 297 ~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 297 AGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred EeccccCCCC----CCCCChhHHHHHHHHHHHHHHHH
Confidence 9999988764 11133667899999999999975
No 24
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.5e-38 Score=318.96 Aligned_cols=378 Identities=18% Similarity=0.224 Sum_probs=252.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCC---CCCCc-ccccCCCCCCCCCCCCCccc---cCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYE---RPALT-KGYLFPLDKKPARLPGFHTC---VGSG 121 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~-~~~---~~~l~-~~~~~~~~~~~~~~~~~~~~---~~~~ 121 (469)
+.+||+|||||+||++||..|+++|. +|+|||+.+.. +.. +...+ +.++.. .....++...... .-..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~---~V~lie~~~~~~GG~~~~~gcip~k~l~~~-~~~~~~~~~~~~~~~~~~~~ 77 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNAMYGGTCINIGCIPTKTLVHD-AQQHTDFVRAIQRKNEVVNF 77 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCC---eEEEEcCCCCccceeEeeccccchHHHHHH-hccCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999987 79999987532 111 11111 111110 0000011000000 0000
Q ss_pred CCCCC-HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe-EEEeccEEeccCCCCCcCCCCCCCC-cCcEEEecCHHHHH
Q 012165 122 GERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADAD 198 (469)
Q Consensus 122 ~~~~~-~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~~~yd~lVlAtG~~~~~~~~~~g~~-~~~v~~~~~~~~~~ 198 (469)
..... .+..+..+++++.+ ++..++.....|.+.++. ++.||+||||||++|. .|+++|.+ .+++++. .
T Consensus 78 ~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~-~p~i~G~~~~~~v~~~------~ 149 (441)
T PRK08010 78 LRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYDS------T 149 (441)
T ss_pred HHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC-CCCCCCccCCCCEECh------h
Confidence 00000 11122348999886 788888776777777775 6999999999999997 56666642 3555432 2
Q ss_pred HHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeCC
Q 012165 199 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAGS 260 (469)
Q Consensus 199 ~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~~ 260 (469)
.+......+++++|||+|++|+|+|..|.++|.+|+ .+.+.+++.||++++++.+++++.+
T Consensus 150 ~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~- 228 (441)
T PRK08010 150 GLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHH- 228 (441)
T ss_pred HhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-
Confidence 333333467899999999999999999999999987 3456788999999999999999854
Q ss_pred CCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccc
Q 012165 261 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337 (469)
Q Consensus 261 ~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~ 337 (469)
++.+ .+.++++ ++++|.|++++|.+||+++ +++++++.+ +|+|.||+++||++|||||+|||+..+.
T Consensus 229 ~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~-------- 298 (441)
T PRK08010 229 ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ-------- 298 (441)
T ss_pred CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--------
Confidence 3333 3555555 5899999999999999886 467788775 5789999999999999999999998643
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCC---CCCCCCceeeecccccCCCcceeeEEeecCCC-------cEEE-E---cc---
Q 012165 338 VEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-I---GN--- 400 (469)
Q Consensus 338 ~~~~~~A~~~a~~~a~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-~---~~--- 400 (469)
..++ |..+|+.++++|++.... .+..+|+ ...+..+ +..+|.+.. +... . ..
T Consensus 299 ~~~~--a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~ 367 (441)
T PRK08010 299 FTYI--SLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPP-------LSRVGMTEEQARESGADIQVVTLPVAAIPR 367 (441)
T ss_pred chhH--HHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCC-------ceeeeCCHHHHHHcCCCeEEEEEecCcChh
Confidence 2243 888899999999864221 2344564 2222222 344454321 0100 0 00
Q ss_pred -----CCCcEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh--hhhcCCCcHHHHHHHHHh
Q 012165 401 -----FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIARA 461 (469)
Q Consensus 401 -----~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 461 (469)
....+.|++++ +++|+|+++++.++.++... .-+|..+.+++. ..+..||++.|.+..|+.
T Consensus 368 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 368 ARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred hhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 01236777774 69999999888777665554 456788877763 334679999999998865
No 25
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.5e-38 Score=320.67 Aligned_cols=383 Identities=21% Similarity=0.285 Sum_probs=251.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccC------------CCC----CCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLF------------PLD----KKPA 109 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~------------~~~----~~~~ 109 (469)
..||++||||||||++||.+|+++|. +|+|||++.. +.. +... +|.++. ... ....
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGL---KTALVEKGKL-GGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL 78 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCC-CcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 46899999999999999999999987 7999998632 211 1111 111110 000 0000
Q ss_pred CCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC-------CcEEEeCCC--eEEEeccEEeccCCCCCcC
Q 012165 110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRF 177 (469)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~-------~~~v~~~~g--~~~~yd~lVlAtG~~~~~~ 177 (469)
+++...... -........+.+++.+++++.+ ++..+|+. ..+|.+.+| .++.||+||||||++|..+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~ 157 (472)
T PRK05976 79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL 157 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence 100000000 0000001123456679999996 78888887 556777676 5799999999999998644
Q ss_pred CCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHH
Q 012165 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQL 239 (469)
Q Consensus 178 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~ 239 (469)
|.. ..++.+.+ +..+.. .....+++++|||+|++|+|+|..|+++|.+|+ .+.+.
T Consensus 158 p~~---~~~~~~~~-~~~~~~---~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~ 230 (472)
T PRK05976 158 PGL---PFDGEYVI-SSDEAL---SLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARL 230 (472)
T ss_pred CCC---CCCCceEE-cchHhh---CccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHH
Confidence 422 23332222 222222 222347899999999999999999999999987 34567
Q ss_pred HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCch--hhhcCCcccCCCEEeCCCCCCCC
Q 012165 240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRM 315 (469)
Q Consensus 240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~Vd~~~~t~~ 315 (469)
+++.||++++++.+++++..+++.+..+.+.+| +++++|.+|+++|.+|+++. ++..++..++|++.||++++|+.
T Consensus 231 l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~ 310 (472)
T PRK05976 231 LKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKE 310 (472)
T ss_pred HHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCC
Confidence 888999999999999997422333434455666 36999999999999999875 45666665668899999999999
Q ss_pred CceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeeecccccCCCcceeeEEeecCCC
Q 012165 316 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVG 393 (469)
Q Consensus 316 ~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~G~~~~ 393 (469)
|+|||+|||+..+. ....|..+|+.++.+|++.....+. ..|. ...++.+ +..+|....
T Consensus 311 ~~IyAiGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~-------~a~vG~te~ 371 (472)
T PRK05976 311 RHIYAIGDVIGEPQ----------LAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPE-------VASVGLTEE 371 (472)
T ss_pred CCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCc-------eEEEeCCHH
Confidence 99999999986432 3456999999999999865433333 3443 2222221 333443321
Q ss_pred -------cEEE--E--c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCC
Q 012165 394 -------ETIE--I--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQA 449 (469)
Q Consensus 394 -------~~~~--~--~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~ 449 (469)
+... . . .....+.++.++ +++|+|+++++.++.++.. +..+|+.+.+++. ..++.|
T Consensus 372 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 451 (472)
T PRK05976 372 EAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPH 451 (472)
T ss_pred HHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccC
Confidence 1100 0 0 011236677664 5899999987877766544 4556788888762 234679
Q ss_pred CcHHHHHHHHHhcC
Q 012165 450 SSVEEALEIARAAL 463 (469)
Q Consensus 450 ~~~~~~~~~~~~~~ 463 (469)
||+.|.++.|++++
T Consensus 452 Pt~~e~~~~~~~~~ 465 (472)
T PRK05976 452 PTLSEAIQEAALAA 465 (472)
T ss_pred CChHHHHHHHHHHh
Confidence 99999999998764
No 26
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.1e-38 Score=324.68 Aligned_cols=383 Identities=19% Similarity=0.291 Sum_probs=256.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCcccccCCC------------C-------CCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPL------------D-------KKP 108 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~l~~~~~~~~------------~-------~~~ 108 (469)
|++++|||+|++|+.+|..++++|. +|+|||++..-+ ...+.-+|.++... . ...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~---~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 77 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGA---DVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEAR 77 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccc
Confidence 4689999999999999999999987 799999875211 00011112111000 0 000
Q ss_pred CCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEE----EeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCC
Q 012165 109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTS----IDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPE 179 (469)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~----id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~ 179 (469)
.+++...... -........+.+++++++++.+ ++.. ++.....|.+.+|+ ++.||+||||||++|..+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p- 155 (466)
T PRK07845 78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILP- 155 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCC-
Confidence 0000000000 0000012234566789999986 6666 33344455556665 6999999999999987444
Q ss_pred CCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHH
Q 012165 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQ 241 (469)
Q Consensus 180 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~ 241 (469)
.++...+.+++..++.+. ...+++++|||+|.+|+|+|..|+++|.+|+ .+.+.|+
T Consensus 156 ~~~~~~~~v~~~~~~~~~------~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~ 229 (466)
T PRK07845 156 TAEPDGERILTWRQLYDL------DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFA 229 (466)
T ss_pred CCCCCCceEEeehhhhcc------cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHH
Confidence 223223445554433322 1346899999999999999999999999998 3457788
Q ss_pred HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCce
Q 012165 242 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 318 (469)
Q Consensus 242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~V 318 (469)
++||++++++.+.+++..+ +.+ .+.+.+|+++++|.|++++|++||+++ +++++++.+ +|+|.||+++||++|||
T Consensus 230 ~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~I 307 (466)
T PRK07845 230 RRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGI 307 (466)
T ss_pred HCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCE
Confidence 9999999999999997543 333 467788899999999999999999986 678888875 57799999999999999
Q ss_pred EEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEeecCCC---
Q 012165 319 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--- 393 (469)
Q Consensus 319 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--- 393 (469)
||+|||+..+. .+..|..+|+.++.++++.... .+..+|. ..|..+- +..+|....
T Consensus 308 yA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~vf~~p~------~a~vGlte~~a~ 368 (466)
T PRK07845 308 YAAGDCTGVLP----------LASVAAMQGRIAMYHALGEAVSPLRLKTVAS---NVFTRPE------IATVGVSQAAID 368 (466)
T ss_pred EEEeeccCCcc----------chhHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCCc------ceeecCCHHHHH
Confidence 99999997532 3456999999999999964322 2334553 4443221 333443221
Q ss_pred ----cE--EE--Ec--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcH
Q 012165 394 ----ET--IE--IG--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSV 452 (469)
Q Consensus 394 ----~~--~~--~~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~ 452 (469)
+. .. .. +....|.|++++ +++|+|+++++.++.++.. +..+|+.+.+++. .....||++
T Consensus 369 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 448 (466)
T PRK07845 369 SGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSL 448 (466)
T ss_pred hCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCH
Confidence 00 00 00 011236777774 5999999988877765444 4556788887762 234679999
Q ss_pred HHHHHHHHhcCCc
Q 012165 453 EEALEIARAALPV 465 (469)
Q Consensus 453 ~~~~~~~~~~~~~ 465 (469)
.|.++.|++.+..
T Consensus 449 ~e~~~~~~~~~~~ 461 (466)
T PRK07845 449 SGSITEAARRLMA 461 (466)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999876543
No 27
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=4.2e-38 Score=322.66 Aligned_cols=391 Identities=15% Similarity=0.229 Sum_probs=250.3
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-cccccCCCCCC----------------C
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLFPLDKK----------------P 108 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~l-~~~~~~~~~~~----------------~ 108 (469)
...++|++|||||+||++||..+++.|. +|+|||++..-+ -++-.+ +|.++.. ... .
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~---~ValIEk~~~GGtCln~GCiPsK~l~~~-a~~~~~~~~~~~~Gi~~~~~ 120 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKA---KVALVEKDYLGGTCVNVGCVPKKIMFNA-ASIHDILENSRHYGFDTQFS 120 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCC---eEEEEecccccccccccCCCCCchhhhh-cccHHHHHHHHhcCCCccCc
Confidence 3467899999999999999999999987 799999874221 011111 2211110 000 0
Q ss_pred CCCCCCccccC---CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC--------------------cEE------EeCCCe
Q 012165 109 ARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--------------------QTL------ITNSGK 159 (469)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~--------------------~~v------~~~~g~ 159 (469)
.+++....... ........+.+++.+++++.|.. .-++... .+| .+++|+
T Consensus 121 ~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a-~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 199 (561)
T PTZ00058 121 FNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKG-SLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQ 199 (561)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEecCCEEEeeccccccccccccccccceeeeccceecCCCc
Confidence 00000000000 00001122345667999988743 2222111 112 234667
Q ss_pred EEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----
Q 012165 160 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----- 234 (469)
Q Consensus 160 ~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~----- 234 (469)
+++||+||||||++|. .|.++|.+ .+. + .+.+.. +..+++++|||+|++|+|+|..|..+|.+|+
T Consensus 200 ~i~ad~lVIATGS~P~-~P~IpG~~--~v~---t---s~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~ 269 (561)
T PTZ00058 200 VIEGKNILIAVGNKPI-FPDVKGKE--FTI---S---SDDFFK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARG 269 (561)
T ss_pred EEECCEEEEecCCCCC-CCCCCCce--eEE---E---HHHHhh-ccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEec
Confidence 8999999999999996 56555532 122 1 233332 2348999999999999999999999999998
Q ss_pred -------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-CEEeCCEEEEccCCccCCchhh--hcCC
Q 012165 235 -------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSPFE--RVGL 298 (469)
Q Consensus 235 -------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~~~~--~~gl 298 (469)
.+.+.+++.||+++++..+.+++..+++.+. +.+.++ +++++|.|++++|++||++++. ..++
T Consensus 270 ~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~ 348 (561)
T PTZ00058 270 NRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNI 348 (561)
T ss_pred ccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCCccccCccccce
Confidence 3456788899999999999999864333332 344444 5799999999999999998763 4444
Q ss_pred cccCCCEEeCCCCCCCCCceEEeccccccCCc-----------------------cCCccc-ccchHHHHHHHHHHHHHH
Q 012165 299 NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQHCIKA 354 (469)
Q Consensus 299 ~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~-----------------------~~~~~~-~~~~~~~A~~~a~~~a~~ 354 (469)
..++|+|.||+++||++|+|||+|||+..+.. ..+... .......|..+|+.+|+|
T Consensus 349 ~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~n 428 (561)
T PTZ00058 349 KTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADR 428 (561)
T ss_pred ecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHH
Confidence 45568899999999999999999999983220 011111 234556799999999999
Q ss_pred HhcCCC--CCCCCCCceeeecccccCCCcceeeEEeecCCC---------cEEE-------------E---ccCCCcEEE
Q 012165 355 LLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIE-------------I---GNFDPKIAT 407 (469)
Q Consensus 355 i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---------~~~~-------------~---~~~~~~~~~ 407 (469)
|++... ..+..+|. .+|..+- +..+|.+.. .... . +.....+.+
T Consensus 429 i~g~~~~~~~~~~ip~---~vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K 499 (561)
T PTZ00058 429 LFGPFSRTTNYKLIPS---VIFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLK 499 (561)
T ss_pred HhCCCCcccCCCCCCe---EEeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEE
Confidence 997422 23445664 3444321 233343221 0000 0 001123666
Q ss_pred EEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHHHHHhcC
Q 012165 408 FWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALEIARAAL 463 (469)
Q Consensus 408 ~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 463 (469)
++++ +++|+|+++++.++.++.. +..+++.+.+++. ..++.|||+.|++..++..+
T Consensus 500 li~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~ 560 (561)
T PTZ00058 500 LVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM 560 (561)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence 6664 5999999988877766544 4556788877763 33468999999999988765
No 28
>PLN02546 glutathione reductase
Probab=100.00 E-value=9.2e-39 Score=327.75 Aligned_cols=375 Identities=21% Similarity=0.247 Sum_probs=252.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCC---CCCCC-cccccC--------------
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPY---ERPAL-TKGYLF-------------- 102 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~---------~~~~~---~~~~l-~~~~~~-------------- 102 (469)
..|||+|||+|+||+.||..++++|. +|+|||+. ..++. ++-.. +|.++.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~ 154 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGA---SAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGF 154 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhc
Confidence 35899999999999999999999987 89999951 11110 00011 111110
Q ss_pred CCC---CCCCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCc
Q 012165 103 PLD---KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 103 ~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
... ....++....... -..........+++.+++++.+ ++..+++. +|.+ +|+++.||+||||||++|.
T Consensus 155 g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~~--~V~v-~G~~~~~D~LVIATGs~p~- 229 (558)
T PLN02546 155 GWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDPH--TVDV-DGKLYTARNILIAVGGRPF- 229 (558)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccCC--EEEE-CCEEEECCEEEEeCCCCCC-
Confidence 000 0000110000000 0000111223456679999986 67777764 5665 5778999999999999996
Q ss_pred CCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHH
Q 012165 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQ 238 (469)
Q Consensus 177 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~ 238 (469)
.|.++|. .... +++.+......+++++|||+|++|+|+|..|..++.+|+ .+.+
T Consensus 230 ~P~IpG~-----~~v~---~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~ 301 (558)
T PLN02546 230 IPDIPGI-----EHAI---DSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAE 301 (558)
T ss_pred CCCCCCh-----hhcc---CHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHH
Confidence 5655542 2222 334444434568999999999999999999999999887 3457
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCC
Q 012165 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM 315 (469)
Q Consensus 239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~ 315 (469)
.|++.||++++++.+.+++..+++.+ .+.+.+++...+|.||+++|++||+++ ++++|++.+ +|+|.||+++||++
T Consensus 302 ~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~ 380 (558)
T PLN02546 302 QMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSV 380 (558)
T ss_pred HHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCC
Confidence 78899999999999999985444543 456666655669999999999999986 578888876 57799999999999
Q ss_pred CceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCCcceeeEEeecCCC
Q 012165 316 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 393 (469)
Q Consensus 316 ~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~ 393 (469)
|+|||+|||+..+. .+..|..+|+.+|+||++... ..|..+|+ ..|+++. +..+|.+..
T Consensus 381 p~IYAaGDv~~~~~----------l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Pe------ia~VGlte~ 441 (558)
T PLN02546 381 PSIWAVGDVTDRIN----------LTPVALMEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPP------IGQVGLTEE 441 (558)
T ss_pred CCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCch------HhhccCCHH
Confidence 99999999997532 345699999999999997542 23456674 4565532 222333221
Q ss_pred -------cEE------------EEccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCC
Q 012165 394 -------ETI------------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQA 449 (469)
Q Consensus 394 -------~~~------------~~~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~ 449 (469)
++. ..+.....|.|++++ +++|+|+++++.++.++.. +..+|+.+.+++. ..++.|
T Consensus 442 eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~h 521 (558)
T PLN02546 442 QAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIH 521 (558)
T ss_pred HHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence 000 011112236777764 5999999998888766554 4556788888763 334789
Q ss_pred CcHHHHHHHHH
Q 012165 450 SSVEEALEIAR 460 (469)
Q Consensus 450 ~~~~~~~~~~~ 460 (469)
|++.|.+..+.
T Consensus 522 PT~~E~~~~~~ 532 (558)
T PLN02546 522 PTAAEEFVTMR 532 (558)
T ss_pred CChHHHHHHHh
Confidence 99999998886
No 29
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.8e-38 Score=320.60 Aligned_cols=382 Identities=24% Similarity=0.331 Sum_probs=244.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-cccccCCCC------CCCCCCCCCccccCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLFPLD------KKPARLPGFHTCVGS 120 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~l-~~~~~~~~~------~~~~~~~~~~~~~~~ 120 (469)
.++||+||||||||++||.+|++.|. +|+|||++..-+ .++... ++.++.... .....+ +.......
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~---~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~-gi~~~~~~ 78 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTF-GISGEVTF 78 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhc-CCCcCccc
Confidence 35899999999999999999999987 799999863211 011001 111110000 000000 00000000
Q ss_pred CC--------------CCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCCCCCCC
Q 012165 121 GG--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGY 184 (469)
Q Consensus 121 ~~--------------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~~~g~~ 184 (469)
++ .......++..+++.+.+ +...++.....|...+| .+++||+||||||++|+.+| +.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p---g~~ 154 (466)
T PRK07818 79 DYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---GTS 154 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCC---CCC
Confidence 00 000011123346776654 33333333333444454 36999999999999987533 332
Q ss_pred c-CcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCc
Q 012165 185 L-PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGV 245 (469)
Q Consensus 185 ~-~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV 245 (469)
. ..+++. .+ .+ .....+++++|||+|++|+|+|..|+++|.+|+ .+.+.|++.||
T Consensus 155 ~~~~v~~~---~~--~~-~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV 228 (466)
T PRK07818 155 LSENVVTY---EE--QI-LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGV 228 (466)
T ss_pred CCCcEEch---HH--Hh-ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCC
Confidence 2 223332 11 11 112357899999999999999999999999987 34567888999
Q ss_pred EEEcCCeEEEEEeCCCCcEEEEEcC--CC--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCce
Q 012165 246 KFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 318 (469)
Q Consensus 246 ~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~V 318 (469)
++++++++++++.+ ++.+ .+.+. +| +++++|.||+++|++||+++ +++.|+..+ +|+|.||+++||+.|+|
T Consensus 229 ~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~I 306 (466)
T PRK07818 229 KILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHI 306 (466)
T ss_pred EEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCE
Confidence 99999999999853 3332 34443 56 47999999999999999885 678888764 57799999999999999
Q ss_pred EEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC---CCCCCCceeeecccccCCCcceeeEEeecCCC--
Q 012165 319 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 393 (469)
Q Consensus 319 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-- 393 (469)
||+|||+..+. ....|..+|+.+|.||++.... .+..+|. ..|..+. +..+|.+..
T Consensus 307 yAiGD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~~~~~p~------~a~vGlte~~a 367 (466)
T PRK07818 307 YAIGDVTAKLQ----------LAHVAEAQGVVAAETIAGAETLELGDYRMMPR---ATFCQPQ------VASFGLTEEQA 367 (466)
T ss_pred EEEeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCCccCccCCCCe---EEECCCC------eEEEeCCHHHH
Confidence 99999986432 4456999999999999974322 3445664 2232211 444554321
Q ss_pred -----cEE--EE--c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCc
Q 012165 394 -----ETI--EI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASS 451 (469)
Q Consensus 394 -----~~~--~~--~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~ 451 (469)
+.. .. . .....|.|+.++ +++|+|+++++.++.++.. +..+|+.+.+++. ..++.||+
T Consensus 368 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt 447 (466)
T PRK07818 368 REEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPT 447 (466)
T ss_pred HhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCc
Confidence 110 00 0 001236677664 5999999987877766554 4556788877762 23467999
Q ss_pred HHHHHHHHHhcCCcc
Q 012165 452 VEEALEIARAALPVE 466 (469)
Q Consensus 452 ~~~~~~~~~~~~~~~ 466 (469)
+.|+++.|++.+..+
T Consensus 448 ~~e~~~~~~~~~~~~ 462 (466)
T PRK07818 448 LSEALKEAFHGLAGH 462 (466)
T ss_pred hHHHHHHHHHHhhcC
Confidence 999999999877654
No 30
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=4.2e-38 Score=321.16 Aligned_cols=380 Identities=21% Similarity=0.257 Sum_probs=252.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-ccccc---------CCC------CCCCCCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYL---------FPL------DKKPARLPG 113 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~l-~~~~~---------~~~------~~~~~~~~~ 113 (469)
+||+||||||||++||..++++|. +|+|||+++.-+- ++-.. +|.++ ... .....++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~---~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGA---SVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 699999999999999999999987 7999998753211 00000 11100 000 000000000
Q ss_pred Cccc---cCCCC-CCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe-EEEeccEEeccCCCCCcCCCCCCCCcCcE
Q 012165 114 FHTC---VGSGG-ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGV 188 (469)
Q Consensus 114 ~~~~---~~~~~-~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~~~yd~lVlAtG~~~~~~~~~~g~~~~~v 188 (469)
.... .-... .....+.+++.+++++.+ ++..++ .++|.+.++. .+.||+||||||++|. .|.++|.+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~~--~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~~ 153 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFKD--PKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAGY 153 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEcc--CCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCce
Confidence 0000 00000 001234567789999886 554443 5778887754 6899999999999986 566666544444
Q ss_pred EEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcC
Q 012165 189 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKG 250 (469)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~ 250 (469)
++.. .+......+++++|||+|.+|+|+|..|.++|.+|+ .+.+.+++.||+++++
T Consensus 154 ~~~~------~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (463)
T TIGR02053 154 LTSE------EALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTS 227 (463)
T ss_pred ECch------hhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcC
Confidence 3322 222222346899999999999999999999999988 3456788899999999
Q ss_pred CeEEEEEeCCCCcEEEEEcC---CCCEEeCCEEEEccCCccCCc-h-hhhcCCccc-CCCEEeCCCCCCCCCceEEeccc
Q 012165 251 ASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 324 (469)
Q Consensus 251 ~~v~~i~~~~~~~v~~v~~~---~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~ 324 (469)
++|++++.++++. .+.+. +++++++|.||+|+|++|+++ + ++..+++.+ +|+|.||++|||+.|+|||+|||
T Consensus 228 ~~V~~i~~~~~~~--~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~ 305 (463)
T TIGR02053 228 AQVKAVSVRGGGK--IITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV 305 (463)
T ss_pred cEEEEEEEcCCEE--EEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeec
Confidence 9999998643322 33332 236799999999999999998 4 677888765 57799999999999999999999
Q ss_pred cccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCC--CCCCceeeecccccCCCcceeeEEeecCCC-------cE
Q 012165 325 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET 395 (469)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~ 395 (469)
+..+. .+..|..+|+.+|.||++.....+ ..+|+ ...+..+ +..+|.+.. +.
T Consensus 306 ~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~g~~~ 366 (463)
T TIGR02053 306 TGGLQ----------LEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPA-------VASVGLTEAEAQKAGIEC 366 (463)
T ss_pred CCCcc----------cHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCc-------eEEEeCCHHHHHhcCCCe
Confidence 97532 345699999999999986423333 34453 2222221 444554321 11
Q ss_pred EE--E--c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHH
Q 012165 396 IE--I--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEI 458 (469)
Q Consensus 396 ~~--~--~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 458 (469)
.. . . .....+.|+.++ +++|+|+++++.++.++... ..+|+.+.+++. .. ...||++.|.+..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~ 446 (463)
T TIGR02053 367 DCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKL 446 (463)
T ss_pred EEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHH
Confidence 00 0 0 011236777764 59999999988887665554 456777777662 22 3578999999999
Q ss_pred HHhcCCc
Q 012165 459 ARAALPV 465 (469)
Q Consensus 459 ~~~~~~~ 465 (469)
|++.+.+
T Consensus 447 a~~~~~~ 453 (463)
T TIGR02053 447 AAQTFYR 453 (463)
T ss_pred HHHHhhc
Confidence 9987643
No 31
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=9.6e-38 Score=326.19 Aligned_cols=382 Identities=18% Similarity=0.255 Sum_probs=253.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccCC------CCCCCC--CC----CC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFP------LDKKPA--RL----PG 113 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~~------~~~~~~--~~----~~ 113 (469)
..+||+||||||||++||..|++.|. +|+|||++. ++.. +... +|.++.. ...... .+ +.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~---~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~ 172 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGA---RVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT 172 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCc
Confidence 46999999999999999999999987 799999873 2211 1111 1111000 000000 00 00
Q ss_pred C--ccccC------CCCC-CCCHhHHHHC-CcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCCCC
Q 012165 114 F--HTCVG------SGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (469)
Q Consensus 114 ~--~~~~~------~~~~-~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~ 181 (469)
. ..... .... ......+++. +++++.+ ++..++.....|.+.+|+ ++.||+||||||++|. .|+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i~ 250 (561)
T PRK13748 173 IDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPIP 250 (561)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCCC
Confidence 0 00000 0000 0111223444 7899886 777788776677776663 6999999999999987 56666
Q ss_pred CCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHHHHHcC
Q 012165 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNG 244 (469)
Q Consensus 182 g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~l~~~g 244 (469)
|.+... ++.. .........+++++|||+|++|+|+|..|.++|.+|+ .+.+.+++.|
T Consensus 251 g~~~~~--~~~~----~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~g 324 (561)
T PRK13748 251 GLKETP--YWTS----TEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEG 324 (561)
T ss_pred CCCccc--eEcc----HHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCC
Confidence 643211 2211 1112222457899999999999999999999999988 3456788999
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165 245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI 321 (469)
Q Consensus 245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~ 321 (469)
|++++++.+++++.. ++.+ .+.+.++ ++++|.||+++|++||+.+ +++++++.+ +|+|.||+++||++|||||+
T Consensus 325 I~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~ 401 (561)
T PRK13748 325 IEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAA 401 (561)
T ss_pred CEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEe
Confidence 999999999999854 3333 3555555 6999999999999999986 578888875 57799999999999999999
Q ss_pred ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC-------
Q 012165 322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 393 (469)
Q Consensus 322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~------- 393 (469)
|||+..+. ....|..+|+.+|.||++... .++...|. ...+..+ +..+|....
T Consensus 402 GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~g~ 462 (561)
T PRK13748 402 GDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQ-------VATVGYSEAEAHHDGI 462 (561)
T ss_pred eecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCC-------ceeeeCCHHHHHHcCC
Confidence 99997653 233588899999999986432 22344553 2222221 344554321
Q ss_pred cE--EEE----------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165 394 ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEAL 456 (469)
Q Consensus 394 ~~--~~~----------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 456 (469)
+. ... ......|.|++++ +++|+|+++++.++.++.. +..+|+.+.+++. ..+..|||+.|.+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~ 542 (561)
T PRK13748 463 ETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGL 542 (561)
T ss_pred CeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHH
Confidence 11 000 0112347777775 6999999987777765444 4556788887763 2246799999999
Q ss_pred HHHHhcCCc
Q 012165 457 EIARAALPV 465 (469)
Q Consensus 457 ~~~~~~~~~ 465 (469)
+.|++.+.+
T Consensus 543 ~~~~~~~~~ 551 (561)
T PRK13748 543 KLAAQTFNK 551 (561)
T ss_pred HHHHHHhhc
Confidence 999976543
No 32
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-39 Score=302.41 Aligned_cols=387 Identities=24% Similarity=0.373 Sum_probs=293.3
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCC--CCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGE--RQT 126 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 126 (469)
.++...+|||+|.+..+++..++.... ..++.+|+.++..||.||+||+.+|+..+.....-..|..+.+.... ...
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da-~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffep 254 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDA-TAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEP 254 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCC-CceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecC
Confidence 345679999999999999888887764 78999999999999999999999887655444333334444443221 112
Q ss_pred HhHH---------HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCC---CcCcEEEecCH
Q 012165 127 PEWY---------KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDV 194 (469)
Q Consensus 127 ~~~~---------~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~---~~~~v~~~~~~ 194 (469)
..|+ ..-||.+..|..|..||.+++.|.+.||.+|.||+++||||.+|+.++.+... -...+.+++.+
T Consensus 255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p 334 (659)
T KOG1346|consen 255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYP 334 (659)
T ss_pred CcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecc
Confidence 2222 23488899999999999999999999999999999999999999887754322 13457888999
Q ss_pred HHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhC----CCeEe-------------------eeHHHHHHcCcEEEcCC
Q 012165 195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTT-------------------RYEQLYQQNGVKFVKGA 251 (469)
Q Consensus 195 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~----g~~v~-------------------~~~~~l~~~gV~~~~~~ 251 (469)
.|.+++...+...++|.|||+|++|.|+|..|.+. |.+|. +-.+.+++.||.++.+.
T Consensus 335 ~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 335 ADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred hHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence 99999888888889999999999999999999764 44554 33566789999999999
Q ss_pred eEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc--CCCEEeCCCCCCCCCceEEeccccccCC
Q 012165 252 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPL 329 (469)
Q Consensus 252 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~ 329 (469)
.|..+... .+.+ .+.++||.++..|+|++|+|-.||+++++..||+.| -||+.||..++.. .|||++||++.+.+
T Consensus 415 ~v~sv~~~-~~nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKC-CKNL-VLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhh-ccce-EEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhc
Confidence 99998754 3333 489999999999999999999999999999999876 4899999988864 89999999999998
Q ss_pred ccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccc---ccCCCc-ceeeEEee---cCC----------
Q 012165 330 KMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE---YEGSPR-KVWWQFFG---DNV---------- 392 (469)
Q Consensus 330 ~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~~~p~~~~~~~~---~~g~~~-~~~~~~~G---~~~---------- 392 (469)
...|+. |++||.+|...|+.+.+||.+ ...+|....+||++.-. |.++.. ...+..+| .+.
T Consensus 492 ~~LGrR-RVehhdhavvSGRLAGENMtg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se 569 (659)
T KOG1346|consen 492 GVLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSE 569 (659)
T ss_pred ccccce-eccccccceeeceeccccccc-ccCCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhh
Confidence 887764 588999999999999999985 56789988899997432 211100 00011111 110
Q ss_pred --C----cE---------EE-------------EccCCCcEEEEEEeCCEEEEEEeecCChHHhHHHHHHHhCCCCCC
Q 012165 393 --G----ET---------IE-------------IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 442 (469)
Q Consensus 393 --~----~~---------~~-------------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (469)
+ +. .. .++-..|-+.||++|++|||+++ .+--..+...+..|.++...+
T Consensus 570 ~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~d 646 (659)
T KOG1346|consen 570 SSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYD 646 (659)
T ss_pred ccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchh
Confidence 0 00 00 00001245789999999999998 454457777888887766543
No 33
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=8.8e-37 Score=308.89 Aligned_cols=376 Identities=20% Similarity=0.265 Sum_probs=249.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCccccc--------------CCC--CCCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYL--------------FPL--DKKPARL 111 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~-~~l~~~~~--------------~~~--~~~~~~~ 111 (469)
++|++|||||++|.+||.. ..|. +|+|||++..-+ -++ +--+|.++ +.. .....++
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~---~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADK---RIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 3799999999999998865 3565 899999865322 111 11122111 000 0000111
Q ss_pred CCCcccc---CCCCCC-CCHhH-HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165 112 PGFHTCV---GSGGER-QTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (469)
Q Consensus 112 ~~~~~~~---~~~~~~-~~~~~-~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~ 186 (469)
....... -..... ....+ ++..|++++.+ +...+ +.++|++.+|+++.||+||||||++|+ .|++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~ 151 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRG-HARFI--GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGV 151 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEE-EEEEe--cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCc
Confidence 1100000 000001 12233 56789999987 44444 568898888888999999999999997 5666664322
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV 248 (469)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~ 248 (469)
.+ .+..+...+ ...+++++|||+|++|+|+|..|+++|.+|+ .+.+ +.+.||+++
T Consensus 152 ~~---~~~~~~~~l---~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~-l~~~~v~i~ 224 (451)
T PRK07846 152 RY---HTSDTIMRL---PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTE-LASKRWDVR 224 (451)
T ss_pred cE---EchHHHhhh---hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHH-HHhcCeEEE
Confidence 22 222333332 2357899999999999999999999999988 1222 335789999
Q ss_pred cCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh--hhcCCccc-CCCEEeCCCCCCCCCceEEecccc
Q 012165 249 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 325 (469)
Q Consensus 249 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a 325 (469)
+++++++++.+ ++.+ .+.+.+|+++++|.|++++|++||++++ ++.+++.+ +|+|.||+++||++|||||+|||+
T Consensus 225 ~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~ 302 (451)
T PRK07846 225 LGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVS 302 (451)
T ss_pred eCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecC
Confidence 99999999854 3333 4677788899999999999999999884 67888875 577999999999999999999999
Q ss_pred ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCC-------cE
Q 012165 326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET 395 (469)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~ 395 (469)
..+. ....|..||+.+++||++... ..+..+|+. .|..+- +..+|.+.. ++
T Consensus 303 ~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~---if~~p~------ia~vGlte~~a~~~g~~~ 363 (451)
T PRK07846 303 SPYQ----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAA---VFTHPQ------IASVGLTENEARAAGLDI 363 (451)
T ss_pred CCcc----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeE---EECCCC------cEeEeCCHHHHHhcCCCE
Confidence 7542 223489999999999986422 234556653 333221 344554321 11
Q ss_pred EE-E---c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh-hh-h-cCCCcHHHHHH
Q 012165 396 IE-I---G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-L-QQASSVEEALE 457 (469)
Q Consensus 396 ~~-~---~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~ 457 (469)
.. . . ....-|.|+.++ +++|+|+++++.++.++.. +..+|+.+.+++. .. . ..||++.|+++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~ 443 (451)
T PRK07846 364 TVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVE 443 (451)
T ss_pred EEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHH
Confidence 00 0 0 001236677664 5999999988877765444 4556788888763 33 2 47999999999
Q ss_pred HHHhcC
Q 012165 458 IARAAL 463 (469)
Q Consensus 458 ~~~~~~ 463 (469)
.|++.+
T Consensus 444 ~a~~~~ 449 (451)
T PRK07846 444 NALLGL 449 (451)
T ss_pred HHHHhc
Confidence 998754
No 34
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=9.4e-37 Score=311.49 Aligned_cols=383 Identities=18% Similarity=0.211 Sum_probs=249.8
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCcccccC-----------CCCCCCCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF-----------PLDKKPARLPG 113 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~-~~l~~~~~~-----------~~~~~~~~~~~ 113 (469)
..++|++|||+|+||+++|..|+++|. ++++||++...+.. + +--++.++. +........+.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~---~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGA---RVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 346899999999999999999999987 79999987433211 1 000111100 00000000000
Q ss_pred Cc--cccC------CCC-CCCCHhHHHHC-CcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCCCC
Q 012165 114 FH--TCVG------SGG-ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (469)
Q Consensus 114 ~~--~~~~------~~~-~~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~ 181 (469)
+. .... ... .......++.. +++++.+ ++..++.....|.+.+|+ ++.||+||||||++|+ .|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~p~i~ 168 (479)
T PRK14727 91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIP 168 (479)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCC-CCCCC
Confidence 00 0000 000 00112233333 7888886 555566555566666663 6999999999999987 45556
Q ss_pred CCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHHHHHcC
Q 012165 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNG 244 (469)
Q Consensus 182 g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~l~~~g 244 (469)
|...... ... . +.+ .....+++++|||+|++|+|+|..|.++|.+|+ .+.+.+++.|
T Consensus 169 G~~~~~~--~~~-~--~~l-~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~G 242 (479)
T PRK14727 169 GLMDTPY--WTS-T--EAL-FSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEG 242 (479)
T ss_pred CcCccce--ecc-h--HHh-ccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCC
Confidence 5322211 111 1 111 112346899999999999999999999999988 3456788899
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165 245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI 321 (469)
Q Consensus 245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~ 321 (469)
|++++++++++++..++ .+ .+.+.++ ++++|.||+++|++||+.+ ++.++++.+ +|+|.||+++||++|+|||+
T Consensus 243 V~i~~~~~V~~i~~~~~-~~-~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~ 319 (479)
T PRK14727 243 IEVLNNTQASLVEHDDN-GF-VLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAA 319 (479)
T ss_pred CEEEcCcEEEEEEEeCC-EE-EEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEe
Confidence 99999999999985433 22 3555555 6999999999999999986 577788775 57799999999999999999
Q ss_pred ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCCc------
Q 012165 322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------ 394 (469)
Q Consensus 322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------ 394 (469)
|||+..+. ....|..+|+.+|.+|++... ..+...|+ .. |..+. +..+|....+
T Consensus 320 GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~--~~-~~~p~------ia~vGlte~~a~~~g~ 380 (479)
T PRK14727 320 GDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPA--VI-FTDPQ------VATVGLSEAKAHLSGI 380 (479)
T ss_pred eecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCc--EE-EecCc------eeeeeCCHHHHHHcCC
Confidence 99997643 234588999999999986432 22344554 22 32211 4445543211
Q ss_pred -E---EE---------EccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165 395 -T---IE---------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEAL 456 (469)
Q Consensus 395 -~---~~---------~~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 456 (469)
. .. .......+.|++++ +++|+|+++++.++.++.. +..+|+.+.+++. .....|||++|++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~ 460 (479)
T PRK14727 381 ETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGL 460 (479)
T ss_pred ceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHH
Confidence 0 00 01112236777774 5999999987777765554 4556788877763 2246799999999
Q ss_pred HHHHhcCC
Q 012165 457 EIARAALP 464 (469)
Q Consensus 457 ~~~~~~~~ 464 (469)
+.|++.+.
T Consensus 461 ~~~~~~~~ 468 (479)
T PRK14727 461 KLCAQTFR 468 (479)
T ss_pred HHHHHhhh
Confidence 99997543
No 35
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=1.8e-38 Score=342.08 Aligned_cols=319 Identities=19% Similarity=0.183 Sum_probs=233.4
Q ss_pred ccccccccccccccccc--CCCCcccccccCCccccccccccccc---------------cc-CCCCCCcEEEEcCcHHH
Q 012165 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIRHSSAKNFQRRGFVVAY---------------SS-FANENREFVIVGGGNAA 63 (469)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~vvIIGgG~AG 63 (469)
..++||||.+|||+||+ +|+.+|.+...+|++..++|++.+.. .+ .....++|+||||||||
T Consensus 239 i~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAG 318 (944)
T PRK12779 239 IESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSG 318 (944)
T ss_pred HHHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHH
Confidence 35799999999999999 79999999888999999988765431 01 12457899999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcE
Q 012165 64 GYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV 143 (469)
Q Consensus 64 l~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 143 (469)
|+||..|++.|+ +|||+|+.+.++.. +. |-.+ ..++|. +...+..+.+++.|++++.++.+
T Consensus 319 LsaA~~Lar~G~---~VtVfE~~~~~GG~---l~--yGIP----~~rlp~-------~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 319 LINAYLLAVEGF---PVTVFEAFHDLGGV---LR--YGIP----EFRLPN-------QLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred HHHHHHHHHCCC---eEEEEeeCCCCCce---EE--ccCC----CCcChH-------HHHHHHHHHHHhhcCeEEEeEEe
Confidence 999999999998 79999988654311 00 1011 112210 00123346678889999987543
Q ss_pred EEEeCCCcEEEeCCCeEEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHHHHHHHh----------hhcCCeEEE
Q 012165 144 TSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS----------LEKAKKVVV 212 (469)
Q Consensus 144 ~~id~~~~~v~~~~g~~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~----------~~~~~~vvV 212 (469)
++.+++++.....||+|+||||+. |+ .+.+||.+.+|+++..++.+....... ...+++|+|
T Consensus 380 ------G~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvV 452 (944)
T PRK12779 380 ------GKTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFV 452 (944)
T ss_pred ------ccEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEE
Confidence 355777666666899999999995 55 566789888999887655543322111 125799999
Q ss_pred EcCChHHHHHHHHHHhCCCeEe---------------eeHHHHHHcCcEEEcCCeEEEEEeCCC-CcEEEEEc-------
Q 012165 213 VGGGYIGMEVAAAAVGWKLDTT---------------RYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKL------- 269 (469)
Q Consensus 213 vG~G~~g~e~A~~l~~~g~~v~---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~-~~v~~v~~------- 269 (469)
||||.+|+++|..+.++|.+|+ .+.. ..+.||+++++..+.++..+++ +.+.++++
T Consensus 453 IGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~ 531 (944)
T PRK12779 453 IGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGE 531 (944)
T ss_pred ECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecc
Confidence 9999999999999999999887 1122 3467999999999999975432 34544432
Q ss_pred --C--------CC--CEEeCCEEEEccCCccCCchhh-hcCCccc-CCCEEeCC-CCCCCCCceEEeccccccCCccCCc
Q 012165 270 --E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDR 334 (469)
Q Consensus 270 --~--------~g--~~i~~D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~Vd~-~~~t~~~~Vfa~GD~a~~~~~~~~~ 334 (469)
. +| .++++|.||+|+|..|+..+.. ..+++.+ +|.|.||+ +++|+.|+|||+|||+..+.
T Consensus 532 ~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~----- 606 (944)
T PRK12779 532 PDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGS----- 606 (944)
T ss_pred ccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChH-----
Confidence 1 22 3699999999999999865432 3467665 57799996 58999999999999997532
Q ss_pred ccccchHHHHHHHHHHHHHHHhc
Q 012165 335 TARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 335 ~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
.+..|+.+|+.||.+|..
T Consensus 607 -----~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 607 -----TAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 345689999999999864
No 36
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-37 Score=315.85 Aligned_cols=375 Identities=16% Similarity=0.205 Sum_probs=243.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCC---CCCC-cccccCCCCCCCCCCCCCccc---cCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYE---RPAL-TKGYLFPLDKKPARLPGFHTC---VGSG 121 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~-~~~---~~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~ 121 (469)
+++||+||||||||++||..|++.|. +|+|||+++.. +.. +..+ ++.++... ....++...... ....
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~---~V~liE~~~~~~GG~c~~~gciP~k~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGK---KVALVEESKAMYGGTCINIGCIPTKTLLVAA-EKNLSFEQVMATKNTVTSR 77 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC---EEEEEecCCcccceeeecCccccchHhhhhh-hcCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999987 79999998642 211 1111 11111110 000011100000 0000
Q ss_pred CCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCC---CeEEEeccEEeccCCCCCcCCCCCCC-CcCcEEEecCHHHH
Q 012165 122 GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADA 197 (469)
Q Consensus 122 ~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~---g~~~~yd~lVlAtG~~~~~~~~~~g~-~~~~v~~~~~~~~~ 197 (469)
......+.+.+.+++++.+ ++..+ ++++|.+.+ ..++.||+||||||++|+ .|+++|. +.+++++ +
T Consensus 78 ~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~-~p~i~G~~~~~~v~~------~ 147 (438)
T PRK07251 78 LRGKNYAMLAGSGVDLYDA-EAHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSN-VLPIPGLADSKHVYD------S 147 (438)
T ss_pred HHHHHHHHHHhCCCEEEEE-EEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCC-CCCCCCcCCCCcEEc------h
Confidence 0011234566779998886 44433 456665543 246999999999999987 4556664 2334433 2
Q ss_pred HHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeC
Q 012165 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAG 259 (469)
Q Consensus 198 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~ 259 (469)
..+......+++++|||+|++|+|+|..++++|.+|+ .+.+.+++.||++++++++++++.+
T Consensus 148 ~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~ 227 (438)
T PRK07251 148 TGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKND 227 (438)
T ss_pred HHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec
Confidence 3333333467899999999999999999999999987 3356678899999999999999853
Q ss_pred CCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCccc
Q 012165 260 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 336 (469)
Q Consensus 260 ~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~ 336 (469)
++.+ .+. .+|+++++|.+|+++|.+|+++. +++.++..+ +|++.||+++||+.|||||+|||+..+.
T Consensus 228 -~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~------- 297 (438)
T PRK07251 228 -GDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ------- 297 (438)
T ss_pred -CCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc-------
Confidence 3333 233 45778999999999999999875 455666654 5779999999999999999999997543
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCC-------cEEE----Ecc--
Q 012165 337 RVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE----IGN-- 400 (469)
Q Consensus 337 ~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~----~~~-- 400 (469)
..++ |..+++.++.++.+... ..+..+|+. ..++.+ +..+|.... +... ...
T Consensus 298 -~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~ 365 (438)
T PRK07251 298 -FTYI--SLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAAMP 365 (438)
T ss_pred -cHhH--HHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCcch
Confidence 2233 77888999988886432 122345542 222221 333443221 0000 000
Q ss_pred ----CC--CcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHHHHH
Q 012165 401 ----FD--PKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALEIAR 460 (469)
Q Consensus 401 ----~~--~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 460 (469)
.. ..+.|++++ +++|+|++++++++.++.. +.-+|+.+.+++. ..+..|||+.|.++.+.
T Consensus 366 ~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 366 RAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred hhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 01 226677664 5999999988877766554 4556788877662 33467999999998763
No 37
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=2.3e-37 Score=314.22 Aligned_cols=376 Identities=19% Similarity=0.244 Sum_probs=245.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCC--------CCCCC---CCCCC-cccccCC---------CCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKE--------AYAPY---ERPAL-TKGYLFP---------LDKK 107 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~--------~~~~~---~~~~l-~~~~~~~---------~~~~ 107 (469)
..+|++|||||++|..||..+++. |. +|+|||++ ..++. ++-.. +|.++.. ....
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~---~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKK---RVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCC---EEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999996 66 89999974 12221 11111 2211100 0000
Q ss_pred ---------CCCCCCCccccC---CCCCCCCHhHHHH-CCcEEEeCCcEEEEeCCCcEEEeCC--------CeEEEeccE
Q 012165 108 ---------PARLPGFHTCVG---SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGSL 166 (469)
Q Consensus 108 ---------~~~~~~~~~~~~---~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~~v~~~~--------g~~~~yd~l 166 (469)
..++........ ........+.+++ .+++++.+ +..-++ .++|.+.+ .+++.||+|
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G-~a~f~~--~~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLG-WGALED--KNVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE-EEEEcc--CCEEEEeeccCCCCCcceEEECCEE
Confidence 000000000000 0000011123444 48999987 444333 45565531 247999999
Q ss_pred EeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhC---CCeEe---------
Q 012165 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTT--------- 234 (469)
Q Consensus 167 VlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~--------- 234 (469)
|||||++|. .|+++|.+ .+. +..+. ......+++++|||+|++|+|+|..+..+ |.+|+
T Consensus 156 IIATGs~p~-~p~i~G~~--~~~---~~~~~---~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 156 LLATGSWPQ-MLGIPGIE--HCI---SSNEA---FYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred EEecCCCCC-CCCCCChh--hee---chhhh---hccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 999999986 45555532 222 22222 22224579999999999999999877655 88887
Q ss_pred ---------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-C
Q 012165 235 ---------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-V 302 (469)
Q Consensus 235 ---------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~ 302 (469)
.+.+.|++.||++++++.+++++..+++. ..+.+.+|+++++|.||+++|++||+++ +++.+++.+ +
T Consensus 227 ~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~ 305 (486)
T TIGR01423 227 RGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKK 305 (486)
T ss_pred cccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCC
Confidence 45677889999999999999998643433 3567778889999999999999999986 467888775 5
Q ss_pred CCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCC
Q 012165 303 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSP 380 (469)
Q Consensus 303 g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~ 380 (469)
|+|.||+++||++|||||+|||+..+. ....|..+|+.+++||++.... .+..+|+ ..|+.+-
T Consensus 306 G~I~Vd~~l~Ts~~~IyA~GDv~~~~~----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~pe-- 370 (486)
T TIGR01423 306 GAIQVDEFSRTNVPNIYAIGDVTDRVM----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIPP-- 370 (486)
T ss_pred CCEecCCCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCCc--
Confidence 779999999999999999999997543 2344899999999999975332 3344664 4444321
Q ss_pred cceeeEEeecCCCc-------EE-E-----------EccC-CCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhC
Q 012165 381 RKVWWQFFGDNVGE-------TI-E-----------IGNF-DPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARS 437 (469)
Q Consensus 381 ~~~~~~~~G~~~~~-------~~-~-----------~~~~-~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~ 437 (469)
+..+|.+..+ .. . .+.. ..-|.|+.++ +++|+|+++++.++.++.. +..+++.
T Consensus 371 ----ia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~ 446 (486)
T TIGR01423 371 ----IGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKL 446 (486)
T ss_pred ----eEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence 3344433210 00 0 0111 1236677764 5899999987777766544 4556788
Q ss_pred CCCCCh--hhhcCCCcHHHHHHHHH
Q 012165 438 QPFVDK--AKLQQASSVEEALEIAR 460 (469)
Q Consensus 438 ~~~~~~--~~~~~~~~~~~~~~~~~ 460 (469)
+.+++. ..++.|||+.|++..+.
T Consensus 447 ~~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 447 NAKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred CCCHHHHhhcccCCCCcHHHHHhhc
Confidence 887762 33478999999999986
No 38
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=8.9e-38 Score=314.38 Aligned_cols=290 Identities=20% Similarity=0.271 Sum_probs=217.0
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (469)
+.+++|||||||+||+.+|..|.+. +.+|||||+++++.|. |.++. +..+... ...+ .....+
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~---~~~ItlI~~~~~~~~~-~~l~~-~~~g~~~-~~~~-----------~~~~~~ 70 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPK---KYNITVISPRNHMLFT-PLLPQ-TTTGTLE-FRSI-----------CEPVRP 70 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcC---CCeEEEEcCCCCcchh-hhHHH-hcccCCC-hHHh-----------HHHHHH
Confidence 4567999999999999999999654 3489999999998774 55543 2222111 1111 112234
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCcEEEe----------CCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHH
Q 012165 129 WYKEKGIEMIYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD 198 (469)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~~v~~----------~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~ 198 (469)
.+...+++++. .+|++||++++.|.+ +++.+++||+||||||+.+. .+.+||.. +..+.++++.++.
T Consensus 71 ~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~-~~~ipG~~-e~~~~~~~~~~a~ 147 (424)
T PTZ00318 71 ALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN-TFNIPGVE-ERAFFLKEVNHAR 147 (424)
T ss_pred HhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC-CCCCCCHH-HcCCCCCCHHHHH
Confidence 45667888887 599999999999988 46778999999999999986 45566643 3455677777776
Q ss_pred HHHHhhh-----------------cCCeEEEEcCChHHHHHHHHHHhC--------------CCeEe-------------
Q 012165 199 ALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTT------------- 234 (469)
Q Consensus 199 ~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~--------------g~~v~------------- 234 (469)
.+++.+. ..++++|||+|++|+|+|..|..+ +.+++
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~ 227 (424)
T PTZ00318 148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFD 227 (424)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCC
Confidence 6654431 124899999999999999998753 56665
Q ss_pred -----eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeC
Q 012165 235 -----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD 308 (469)
Q Consensus 235 -----~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd 308 (469)
.+++.|++.||+++++++|+++..+ .+.+++|+++++|.+|+++|.+|+ +++++++++.+ +|+|.||
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd 300 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVD 300 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeC
Confidence 4567789999999999999999742 467889999999999999999998 68888888765 5899999
Q ss_pred CCCC-CCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcee
Q 012165 309 GQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY 370 (469)
Q Consensus 309 ~~~~-t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~~~p~~~ 370 (469)
++|| +++|||||+|||+..+.... ...++.|..||..+|+||...-.......||.|
T Consensus 301 ~~l~~~~~~~IfAiGD~a~~~~~~~-----~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~ 358 (424)
T PTZ00318 301 DHLRVKPIPNVFALGDCAANEERPL-----PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY 358 (424)
T ss_pred CCcccCCCCCEEEEeccccCCCCCC-----CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence 9999 59999999999998643211 235667999999999999753211113455544
No 39
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=1.5e-38 Score=323.30 Aligned_cols=318 Identities=24% Similarity=0.255 Sum_probs=224.3
Q ss_pred ccccccccccccccccC--CCCcccccc--cCCccccccccccccc--------ccCCCCCCcEEEEcCcHHHHHHHHHH
Q 012165 3 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVAY--------SSFANENREFVIVGGGNAAGYAARTF 70 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~vvIIGgG~AGl~aA~~L 70 (469)
..+||||.+||++|+++ |+..|.+.. .++++..+.+...... .+.....++|+|||||+||+++|..|
T Consensus 80 ~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l 159 (457)
T PRK11749 80 LETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRL 159 (457)
T ss_pred HHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHH
Confidence 47899999999999999 999999765 6677776666433211 12234568999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC
Q 012165 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (469)
Q Consensus 71 ~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~ 150 (469)
++.|+ +|+|+|+.+..... +. +..+. .+++. +......+++++.+++++.++.+ .
T Consensus 160 ~~~g~---~V~lie~~~~~gG~---l~--~gip~----~~~~~-------~~~~~~~~~l~~~gv~~~~~~~v------~ 214 (457)
T PRK11749 160 ARKGY---DVTIFEARDKAGGL---LR--YGIPE----FRLPK-------DIVDREVERLLKLGVEIRTNTEV------G 214 (457)
T ss_pred HhCCC---eEEEEccCCCCCcE---ee--ccCCC----ccCCH-------HHHHHHHHHHHHcCCEEEeCCEE------C
Confidence 99987 79999988754211 00 00010 01110 00123446678889999988654 1
Q ss_pred cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHH---HhhhcCCeEEEEcCChHHHHHHHHHH
Q 012165 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAAV 227 (469)
Q Consensus 151 ~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~---~~~~~~~~vvVvG~G~~g~e~A~~l~ 227 (469)
+.+++++.. +.||+||||||+.....+.++|.+.+++++..+........ ..+..+++|+|||+|.+|+|+|..+.
T Consensus 215 ~~v~~~~~~-~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~ 293 (457)
T PRK11749 215 RDITLDELR-AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAK 293 (457)
T ss_pred CccCHHHHH-hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHH
Confidence 223333333 78999999999863334556777677776653322222110 11236899999999999999999999
Q ss_pred hCCC-eEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-------------------CCC
Q 012165 228 GWKL-DTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------------------DGS 273 (469)
Q Consensus 228 ~~g~-~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-------------------~g~ 273 (469)
++|. +|+ ...+.+++.||++++++.+.++..+ ++.+.+|.+. +++
T Consensus 294 ~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~ 372 (457)
T PRK11749 294 RLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEF 372 (457)
T ss_pred HcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceE
Confidence 9987 676 1235677899999999999999854 3332233321 234
Q ss_pred EEeCCEEEEccCCccCCchhh-hcCCccc-CCCEEeCC-CCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHH
Q 012165 274 TIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 350 (469)
Q Consensus 274 ~i~~D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~Vd~-~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~ 350 (469)
++++|.||+++|.+|+..++. ..++..+ +|+|.||+ +++|+.|+|||+|||+..+. .+..|+.+|+.
T Consensus 373 ~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~----------~~~~A~~~G~~ 442 (457)
T PRK11749 373 TLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA----------TVVWAVGDGKD 442 (457)
T ss_pred EEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCch----------HHHHHHHHHHH
Confidence 799999999999999977754 4566654 57899998 89999999999999995321 45679999999
Q ss_pred HHHHHhc
Q 012165 351 CIKALLS 357 (469)
Q Consensus 351 ~a~~i~~ 357 (469)
+|.+|..
T Consensus 443 aA~~I~~ 449 (457)
T PRK11749 443 AAEAIHE 449 (457)
T ss_pred HHHHHHH
Confidence 9988864
No 40
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=3.1e-38 Score=321.43 Aligned_cols=318 Identities=22% Similarity=0.269 Sum_probs=228.5
Q ss_pred ccccccccccccccccCCCCcccccc--cCCccccccccccccc-------c--cCCCCCCcEEEEcCcHHHHHHHHHHH
Q 012165 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY-------S--SFANENREFVIVGGGNAAGYAARTFV 71 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~--~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (469)
.++||||.+||++|+++|+..|+|.. .+++++.+.|+..+.. + +.....++|+|||||+||+++|..|+
T Consensus 84 ~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~ 163 (471)
T PRK12810 84 HQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLA 163 (471)
T ss_pred HHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence 47899999999999999999999986 8899998988765431 1 12234579999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc
Q 012165 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (469)
Q Consensus 72 ~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~ 151 (469)
+.|+ +|+|+|+++.+... +. +-.+ ..+++. .......+++.+.|++++.++.+. .+...
T Consensus 164 ~~G~---~V~vie~~~~~GG~---l~--~gip----~~~~~~-------~~~~~~~~~~~~~gv~~~~~~~v~-~~~~~- 222 (471)
T PRK12810 164 RAGH---KVTVFERADRIGGL---LR--YGIP----DFKLEK-------EVIDRRIELMEAEGIEFRTNVEVG-KDITA- 222 (471)
T ss_pred hCCC---cEEEEecCCCCCce---ee--ecCC----cccCCH-------HHHHHHHHHHHhCCcEEEeCCEEC-CcCCH-
Confidence 9987 79999998764311 00 0000 001100 001223467788999999986542 22111
Q ss_pred EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHH--HHHH------hhhcCCeEEEEcCChHHHHHH
Q 012165 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS------SLEKAKKVVVVGGGYIGMEVA 223 (469)
Q Consensus 152 ~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~------~~~~~~~vvVvG~G~~g~e~A 223 (469)
+.....||+||+|||+.+...+.++|.+.+++++..++.... .+.. ....+++|+|||+|++|+|+|
T Consensus 223 -----~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 223 -----EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred -----HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 111257999999999983334566787778887653322111 1111 124579999999999999999
Q ss_pred HHHHhCCC-eEe-----------e-------------eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-----CC-
Q 012165 224 AAAVGWKL-DTT-----------R-------------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DG- 272 (469)
Q Consensus 224 ~~l~~~g~-~v~-----------~-------------~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-----~g- 272 (469)
..+.++|. +|+ . ..+.+++.||+++++..++++.. +++++.+|++. +|
T Consensus 298 ~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~ 376 (471)
T PRK12810 298 GTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGD 376 (471)
T ss_pred HHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCC
Confidence 98888875 455 1 24556789999999999999973 46666655432 22
Q ss_pred --------CEEeCCEEEEccCCccCC-chhhhcCCccc-CCCEEeC-CCCCCCCCceEEeccccccCCccCCcccccchH
Q 012165 273 --------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 341 (469)
Q Consensus 273 --------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~Vd-~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~ 341 (469)
+++++|.||+|+|.+|+. .++++++++.+ +|.+.+| ++++|+.|+|||+|||+..+. .+
T Consensus 377 ~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~----------~~ 446 (471)
T PRK12810 377 FEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----------LV 446 (471)
T ss_pred ccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch----------hH
Confidence 479999999999999985 47888888776 5779998 799999999999999997432 34
Q ss_pred HHHHHHHHHHHHHHhc
Q 012165 342 DHARQSAQHCIKALLS 357 (469)
Q Consensus 342 ~~A~~~a~~~a~~i~~ 357 (469)
..|+.+|+.+|.+|..
T Consensus 447 ~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 447 VWAIAEGRQAARAIDA 462 (471)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688889998888753
No 41
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=2.5e-36 Score=305.27 Aligned_cols=352 Identities=20% Similarity=0.295 Sum_probs=255.1
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC-HhHHHHCCcEEEeCCcE
Q 012165 65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT-PEWYKEKGIEMIYQDPV 143 (469)
Q Consensus 65 ~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~v 143 (469)
+||.+|++.+. +.+|||||+++.+.|....++. +..+.......+ .... .+++.+.+++++.+++|
T Consensus 1 saA~~l~~~~~-~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V 67 (427)
T TIGR03385 1 SAASRVRRLDK-ESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNKL-----------LAYTPEVFIKKRGIDVKTNHEV 67 (427)
T ss_pred CHHHHHHhhCC-CCcEEEEEcCCceeEEcCCCCe-EeccccCCHHHc-----------ccCCHHHHHHhcCCeEEecCEE
Confidence 47899998764 6799999999988776433432 221111100000 1122 34558899999888899
Q ss_pred EEEeCCCcEEEeCC---CeEEE--eccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhh--hcCCeEEEEcCC
Q 012165 144 TSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGG 216 (469)
Q Consensus 144 ~~id~~~~~v~~~~---g~~~~--yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--~~~~~vvVvG~G 216 (469)
+.+|++++++.+.+ ++++. ||+||||||++|. .|.++|.+.+++++.+++.++..++..+ ..+++++|||+|
T Consensus 68 ~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~-~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 68 IEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPI-VPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 99999988887753 34677 9999999999987 4667776667788888888887777665 457899999999
Q ss_pred hHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeC
Q 012165 217 YIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 277 (469)
Q Consensus 217 ~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~ 277 (469)
++|+|+|..|+++|.+++ .+.+.+++.||++++++.+++++. ++.+ +.+.+|+++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~ 222 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA 222 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence 999999999999998887 235677889999999999999974 3333 45678889999
Q ss_pred CEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165 278 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 278 D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
|.+|+++|.+|++++++++++..+ +|+|.||+++||+.|+|||+|||+..+....+.......+..|..||+.+|+||+
T Consensus 223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 999999999999999999998875 5789999999999999999999998765443332223467789999999999998
Q ss_pred cCCCCCCCCC-CceeeecccccCCCcceeeEEeecCCC-------cE--EEEcc---------CCCcEEEEEEe--CCEE
Q 012165 357 SAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEIGN---------FDPKIATFWID--SGKL 415 (469)
Q Consensus 357 ~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~~~---------~~~~~~~~~~~--~~~l 415 (469)
+. ...+... +..++..++++ +..+|.... +. ..... ...-+.|++++ +++|
T Consensus 303 g~-~~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~i 374 (427)
T TIGR03385 303 GN-DIEFKGVLGTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRI 374 (427)
T ss_pred CC-CCCCCCcceeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeE
Confidence 64 3445432 23233333332 556665432 11 11100 01126777774 5999
Q ss_pred EEEEeecCC-hHHhH-HHHHHHhCCCCCC
Q 012165 416 KGVLVESGS-PEEFQ-LLPTLARSQPFVD 442 (469)
Q Consensus 416 ~g~~~~~~~-~~~~~-~~~~~~~~~~~~~ 442 (469)
+|+++++.+ +.++. .+..+|+.+.+++
T Consensus 375 lG~~~~g~~~a~e~i~~~~~ai~~~~t~~ 403 (427)
T TIGR03385 375 LGAQAVGKEGADKRIDVLAAAIMAGLTVK 403 (427)
T ss_pred EEEEEEccccHHHHHHHHHHHHHCCCCHH
Confidence 999987777 65544 4555677777666
No 42
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.2e-36 Score=309.51 Aligned_cols=380 Identities=17% Similarity=0.209 Sum_probs=247.9
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCcccccC--------------CC----CCCCCCC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF--------------PL----DKKPARL 111 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~-~~l~~~~~~--------------~~----~~~~~~~ 111 (469)
+|+|||||+||++||..+++.|. +|+|||+++..+ .++ +--+|.++. +. .....++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~---~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK---NVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 79999999999999999999987 799999875321 011 111221110 00 0000011
Q ss_pred CCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC-eEEEeccEEeccCCCCCcCCCCCCCCcCc
Q 012165 112 PGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (469)
Q Consensus 112 ~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~~yd~lVlAtG~~~~~~~~~~g~~~~~ 187 (469)
..+.... ...........++..+++++.+ ++..++.....|..+++ .+++||+||||||++|+.+| +++.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~ 156 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKW 156 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCe
Confidence 0000000 0000001122345678999886 66667765556665555 46999999999999987444 34433333
Q ss_pred EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEc
Q 012165 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVK 249 (469)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~ 249 (469)
+++. .........+++++|||+|++|+|+|..+.++|.+|+ .+.+.+++.||++++
T Consensus 157 v~~~------~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~ 230 (458)
T PRK06912 157 IINS------KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFT 230 (458)
T ss_pred EEcc------hHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEE
Confidence 3322 2222323457899999999999999999999999887 345678889999999
Q ss_pred CCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCch--hhhcCCcccCCCEEeCCCCCCCCCceEEecccc
Q 012165 250 GASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 325 (469)
Q Consensus 250 ~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a 325 (469)
++++++++.+ +..+ .+.. +| +++++|.||+++|.+|+++. ++..++..+++++.||+++||+.|||||+|||+
T Consensus 231 ~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~~ 307 (458)
T PRK06912 231 GAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDVI 307 (458)
T ss_pred CCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeecC
Confidence 9999999753 2222 2332 34 36999999999999999875 467788776667999999999999999999999
Q ss_pred ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC-------cEEE
Q 012165 326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE 397 (469)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~ 397 (469)
..+. ....|..+|+.+|.+|.+... ..+..+|.. .|..+. +..+|.+.. +...
T Consensus 308 ~~~~----------la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~---v~~~p~------~a~vGlte~~a~~~g~~~~~ 368 (458)
T PRK06912 308 GGIQ----------LAHVAFHEGTTAALHASGEDVKVNYHAVPRC---IYTSPE------IASVGLTEKQAREQYGDIRI 368 (458)
T ss_pred CCcc----------cHHHHHHHHHHHHHHHcCCCCCCCcCCCCeE---EecCch------hEEeeCCHHHHHHCCCCeEE
Confidence 6432 344599999999999986432 224556642 232111 233443221 1111
Q ss_pred Ec-cC-----------CCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHHHHH
Q 012165 398 IG-NF-----------DPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALEIAR 460 (469)
Q Consensus 398 ~~-~~-----------~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 460 (469)
.. .+ ...+.|++++ +++|+|++++++++.++.. +..+|+.+.+++. ..+..||++.|+++.|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 448 (458)
T PRK06912 369 GEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEAL 448 (458)
T ss_pred EEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHH
Confidence 00 00 1236777774 5899999987777765444 4556788887762 33568999999999998
Q ss_pred hcCCc
Q 012165 461 AALPV 465 (469)
Q Consensus 461 ~~~~~ 465 (469)
+.+..
T Consensus 449 ~~~~~ 453 (458)
T PRK06912 449 LQAVG 453 (458)
T ss_pred HHhhc
Confidence 76543
No 43
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=5.7e-37 Score=312.12 Aligned_cols=379 Identities=20% Similarity=0.236 Sum_probs=245.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC--------CCCC---CCCCC-cccccCC-----CCCCCCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA--------YAPY---ERPAL-TKGYLFP-----LDKKPARLPG 113 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~--------~~~~---~~~~l-~~~~~~~-----~~~~~~~~~~ 113 (469)
.+|++|||+|+||+.+|..+++.|. +|++||+.. ..+. ++-.. +|.++.. .......+ +
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~---~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~-g 77 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGA---KVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNY-G 77 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhc-C
Confidence 4799999999999999999999987 799999631 0110 11111 1111100 00000000 0
Q ss_pred Cccc--cCCC--------------CCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCC
Q 012165 114 FHTC--VGSG--------------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 114 ~~~~--~~~~--------------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~ 175 (469)
+... ...+ ........++..+++++.+ ....+++..-.|...++ ..+.||+||||||++|+
T Consensus 78 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~ 156 (484)
T TIGR01438 78 WNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPR 156 (484)
T ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCC
Confidence 0000 0000 0011223466779999986 55556654333332333 36999999999999997
Q ss_pred cCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHH
Q 012165 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQ 238 (469)
Q Consensus 176 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~ 238 (469)
.|+++|... ... +.+.+......+++++|||+|++|+|+|..|+++|.+|+ .+++
T Consensus 157 -~p~ipG~~~----~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~ 228 (484)
T TIGR01438 157 -YPGIPGAKE----LCI---TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGE 228 (484)
T ss_pred -CCCCCCccc----eee---cHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHH
Confidence 455555321 111 233333333456899999999999999999999999988 4456
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC---CEEeCCEEEEccCCccCCch--hhhcCCccc--CCCEEeCCCC
Q 012165 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVDGQF 311 (469)
Q Consensus 239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~i~Vd~~~ 311 (469)
.|++.||++++++.+.+++..+ +.+ .+++.++ +++++|.||+++|++||+++ +++.+++.+ +|+|.||+++
T Consensus 229 ~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~ 306 (484)
T TIGR01438 229 HMEEHGVKFKRQFVPIKVEQIE-AKV-KVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEE 306 (484)
T ss_pred HHHHcCCEEEeCceEEEEEEcC-CeE-EEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCc
Confidence 7889999999999999998543 332 4566555 37999999999999999986 567888765 3779999999
Q ss_pred CCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCCcceeeEEee
Q 012165 312 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFG 389 (469)
Q Consensus 312 ~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G 389 (469)
||+.|+|||+|||+..... ....|..+|+.+|+||++... ..+..+|+. .|..+- +..+|
T Consensus 307 ~Ts~p~IyA~GDv~~~~~~---------l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---i~~~p~------ia~vG 368 (484)
T TIGR01438 307 QTNVPYIYAVGDILEDKQE---------LTPVAIQAGRLLAQRLFSGSTVICDYENVPTT---VFTPLE------YGACG 368 (484)
T ss_pred ccCCCCEEEEEEecCCCcc---------chHHHHHHHHHHHHHHhcCCCcccccccCCeE---EeCCCc------eeeec
Confidence 9999999999999963211 334599999999999986432 235556642 333221 33344
Q ss_pred cCCC---------cEE-EEccC-------------CCcEEEEEE-e--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCC
Q 012165 390 DNVG---------ETI-EIGNF-------------DPKIATFWI-D--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD 442 (469)
Q Consensus 390 ~~~~---------~~~-~~~~~-------------~~~~~~~~~-~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 442 (469)
.+.. ... ....+ ..-|.++.+ + +++|+|+++++.++.++.. +..+|+.+.+++
T Consensus 369 lte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~ 448 (484)
T TIGR01438 369 LSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKK 448 (484)
T ss_pred CCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHH
Confidence 3221 000 00000 123566654 3 5899999987777766544 455678887776
Q ss_pred h--hhhcCCCcHHHHHHHHHhc
Q 012165 443 K--AKLQQASSVEEALEIARAA 462 (469)
Q Consensus 443 ~--~~~~~~~~~~~~~~~~~~~ 462 (469)
. ..+..||++.|+++.++..
T Consensus 449 dl~~~~~~hPt~sE~~~~~~~~ 470 (484)
T TIGR01438 449 DLDNTIGIHPVCAEVFTTLSVT 470 (484)
T ss_pred HHhhhhcCCCChHHHHHHhhhh
Confidence 2 2346799999999998855
No 44
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=2e-36 Score=309.02 Aligned_cols=384 Identities=21% Similarity=0.283 Sum_probs=250.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccCCC------------C----CCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFPL------------D----KKPAR 110 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~~~------------~----~~~~~ 110 (469)
++||+|||||+||++||.+|++.|. +|+|||+ +.++.. +... ++.++... . ....+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~---~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 76 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGL---KVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVD 76 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCC---eEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCC
Confidence 3899999999999999999999987 7999998 433211 1111 11111000 0 00000
Q ss_pred CCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC-eEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165 111 LPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP 186 (469)
Q Consensus 111 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~~yd~lVlAtG~~~~~~~~~~g~~~~ 186 (469)
++.+... ...........++++.+++++.+ ++..++.....+...++ .++.||+||||||++|+.+| ++ ...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~ 153 (461)
T TIGR01350 77 WEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFD 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCC
Confidence 0000000 00000001123445678999886 56666655555555554 47999999999999987443 33 1122
Q ss_pred cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV 248 (469)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~ 248 (469)
+. .+.+..+.. .....+++++|||+|.+|+|+|..|.++|.+++ .+.+.+++.||+++
T Consensus 154 ~~-~~~~~~~~~---~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~ 229 (461)
T TIGR01350 154 GE-VVITSTGAL---NLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKIL 229 (461)
T ss_pred Cc-eEEcchHHh---ccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 32 122222322 223457899999999999999999999999887 34566888999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCc--hhhhcCCccc-CCCEEeCCCCCCCCCceEEecc
Q 012165 249 KGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 323 (469)
Q Consensus 249 ~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD 323 (469)
+++.+++++.+ ++.+ .+.+.+| +++++|.+|+++|.+|+++ ++++.++..+ +|++.||+++||+.|+|||+||
T Consensus 230 ~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD 307 (461)
T TIGR01350 230 TNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGD 307 (461)
T ss_pred eCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeee
Confidence 99999999854 3333 3566667 5799999999999999998 5788888876 4779999999999999999999
Q ss_pred ccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeecccccCCCcceeeEEeecCCC-------c
Q 012165 324 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E 394 (469)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~ 394 (469)
|+..+. ....|..+|+.+|++|.+..... +...|.. ..++.. +..+|.... +
T Consensus 308 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~-------~a~vG~~~~~a~~~g~~ 368 (461)
T TIGR01350 308 VIGGPM----------LAHVASHEGIVAAENIAGKEPAPIDYDAVPSC--IYTDPE-------VASVGLTEEQAKEAGYD 368 (461)
T ss_pred cCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeE--EecCCc-------eEEEeCCHHHHHhCCCC
Confidence 997432 34569999999999998643323 2344432 112211 233333211 0
Q ss_pred E--EEE----------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCC--hhhhcCCCcHHHHHH
Q 012165 395 T--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD--KAKLQQASSVEEALE 457 (469)
Q Consensus 395 ~--~~~----------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 457 (469)
. ... .+....+.+++++ +++|+|+++++.++.++.. +..+|+.+.+++ ...+..+|++.|.++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~ 448 (461)
T TIGR01350 369 VKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIK 448 (461)
T ss_pred eEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHH
Confidence 0 000 0011236677664 5999999987877766554 455678888776 223567999999999
Q ss_pred HHHhcCCcc
Q 012165 458 IARAALPVE 466 (469)
Q Consensus 458 ~~~~~~~~~ 466 (469)
.|++++..+
T Consensus 449 ~~~~~~~~~ 457 (461)
T TIGR01350 449 EAALAALGK 457 (461)
T ss_pred HHHHHhccC
Confidence 998876543
No 45
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=2.9e-36 Score=305.46 Aligned_cols=376 Identities=22% Similarity=0.280 Sum_probs=245.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCcccccC--------------CC--CCCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLF--------------PL--DKKPARL 111 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~l~~~~~~--------------~~--~~~~~~~ 111 (469)
++|++|||+|++|..||.. ..|. +|+|||++..-+ ..-+--+|.++. .. .....++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~---~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~ 76 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADK---RIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRW 76 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCH
Confidence 5899999999999998644 4565 899999865321 111111221110 00 0000111
Q ss_pred CCCccccCC----CCCCCCHhHH---HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC
Q 012165 112 PGFHTCVGS----GGERQTPEWY---KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY 184 (469)
Q Consensus 112 ~~~~~~~~~----~~~~~~~~~~---~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~ 184 (469)
......... ........+. ++.+++++.+..+.. +.++|.+.+|+++.||+||||||++|.. |+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~-- 150 (452)
T TIGR03452 77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA-- 150 (452)
T ss_pred HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--
Confidence 111100000 0000111221 237999998754432 5678888888889999999999999974 43222
Q ss_pred cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcE
Q 012165 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVK 246 (469)
Q Consensus 185 ~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~ 246 (469)
..++. +.+..+...+ ...+++++|||+|++|+|+|..|.++|.+|+ .+.+ +.+.||+
T Consensus 151 ~~~~~-~~~~~~~~~l---~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~-~~~~gI~ 225 (452)
T TIGR03452 151 DSGVR-YHTNEDIMRL---PELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTE-IAKKKWD 225 (452)
T ss_pred CCCCE-EEcHHHHHhh---hhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHH-HHhcCCE
Confidence 22332 2333444433 2357899999999999999999999999988 2223 2346899
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEecc
Q 012165 247 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 323 (469)
Q Consensus 247 ~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD 323 (469)
+++++.+++++.++ +.+ .+.+.+|+++++|.|++++|++||+++ ++++|++.+ +|+|.||+++||++|+|||+||
T Consensus 226 i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD 303 (452)
T TIGR03452 226 IRLGRNVTAVEQDG-DGV-TLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGD 303 (452)
T ss_pred EEeCCEEEEEEEcC-CeE-EEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeec
Confidence 99999999998543 333 466778889999999999999999987 467788875 5779999999999999999999
Q ss_pred ccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCC-------
Q 012165 324 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 393 (469)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~------- 393 (469)
|+..+. . ...|..||+.+|+||++... ..+..+|.. .|..+- +..+|.+..
T Consensus 304 ~~~~~~--------l--~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~---i~t~p~------ia~vGlte~ea~~~g~ 364 (452)
T TIGR03452 304 VSSPYQ--------L--KHVANAEARVVKHNLLHPNDLRKMPHDFVPSA---VFTHPQ------IATVGLTEQEAREAGH 364 (452)
T ss_pred ccCccc--------C--hhHHHHHHHHHHHHhcCCCCcccCCCCCCCeE---EECCCC------eeeeeCCHHHHHhcCC
Confidence 997542 2 23488999999999986432 234456642 332211 334454321
Q ss_pred cEEE-Ec-----------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh-hh--hcCCCcHHHH
Q 012165 394 ETIE-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK--LQQASSVEEA 455 (469)
Q Consensus 394 ~~~~-~~-----------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~~~~~ 455 (469)
+... .- .....|.|+.++ +++|+|+++++.++.++... ..+|+.+.+++. .. +..||++.|+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~ 444 (452)
T TIGR03452 365 DITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEV 444 (452)
T ss_pred CeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHH
Confidence 1100 00 011236677764 69999999888777655554 456788888763 33 3579999999
Q ss_pred HHHHHhcC
Q 012165 456 LEIARAAL 463 (469)
Q Consensus 456 ~~~~~~~~ 463 (469)
++.|++++
T Consensus 445 ~~~a~~~~ 452 (452)
T TIGR03452 445 VENALLGL 452 (452)
T ss_pred HHHHHhcC
Confidence 99998764
No 46
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=4.7e-38 Score=336.98 Aligned_cols=320 Identities=21% Similarity=0.244 Sum_probs=235.0
Q ss_pred ccccccccccccccccc--CCCCcccccc---cCCccccccccccccc-------cc--CCCCCCcEEEEcCcHHHHHHH
Q 012165 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAY-------SS--FANENREFVIVGGGNAAGYAA 67 (469)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~--~~~~~~~vvIIGgG~AGl~aA 67 (469)
..++||||.+||++|++ +|+..|.+.. .++++..++|+..+.. .+ .....++|+||||||||++||
T Consensus 368 ~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA 447 (752)
T PRK12778 368 LKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFA 447 (752)
T ss_pred HHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHH
Confidence 35789999999999997 8999999876 3788888888665321 11 124568999999999999999
Q ss_pred HHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEe
Q 012165 68 RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSID 147 (469)
Q Consensus 68 ~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 147 (469)
.+|++.|+ +|+|+|+++.++.. +. +-.+ ..++|. +...+..+++++.|++++.++.+
T Consensus 448 ~~l~~~G~---~V~v~e~~~~~GG~---l~--~gip----~~rlp~-------~~~~~~~~~l~~~gv~~~~~~~v---- 504 (752)
T PRK12778 448 GDLAKRGY---DVTVFEALHEIGGV---LK--YGIP----EFRLPK-------KIVDVEIENLKKLGVKFETDVIV---- 504 (752)
T ss_pred HHHHHCCC---eEEEEecCCCCCCe---ee--ecCC----CCCCCH-------HHHHHHHHHHHHCCCEEECCCEE----
Confidence 99999998 79999987543211 00 1011 111211 00123346678889999987543
Q ss_pred CCCcEEEeCCCeEEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHHHHHHH--------hhhcCCeEEEEcCChH
Q 012165 148 IEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYI 218 (469)
Q Consensus 148 ~~~~~v~~~~g~~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~ 218 (469)
++.+++++.....||+||||||+. |+ .+.++|.+.+++++..++.....+.. ....+++|+|||+|++
T Consensus 505 --~~~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 581 (752)
T PRK12778 505 --GKTITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNT 581 (752)
T ss_pred --CCcCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHH
Confidence 344555554456799999999984 65 45678888888887665443322211 1235789999999999
Q ss_pred HHHHHHHHHhCCCe-Ee------------e--eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------CC--
Q 012165 219 GMEVAAAAVGWKLD-TT------------R--YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG-- 272 (469)
Q Consensus 219 g~e~A~~l~~~g~~-v~------------~--~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------~g-- 272 (469)
|+|+|..+.++|.+ |+ . ..+.+++.||++++++.+.++..++++++.++++. +|
T Consensus 582 a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~ 661 (752)
T PRK12778 582 AMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRR 661 (752)
T ss_pred HHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCC
Confidence 99999999999987 76 1 11356788999999999999976556776666542 22
Q ss_pred ---------CEEeCCEEEEccCCccCCchhhhc-CCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchH
Q 012165 273 ---------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 341 (469)
Q Consensus 273 ---------~~i~~D~vi~a~G~~p~~~~~~~~-gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~ 341 (469)
+++++|.||+|+|.+|+..++... ++..+ +|+|.||++++|+.|+|||+|||+..+. .+
T Consensus 662 ~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~----------~v 731 (752)
T PRK12778 662 RPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA----------TV 731 (752)
T ss_pred CceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH----------HH
Confidence 259999999999999998776553 67765 5789999999999999999999997532 34
Q ss_pred HHHHHHHHHHHHHHhc
Q 012165 342 DHARQSAQHCIKALLS 357 (469)
Q Consensus 342 ~~A~~~a~~~a~~i~~ 357 (469)
..|+.+|+.+|.+|..
T Consensus 732 v~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 732 ILAMGDGKRAAAAIDE 747 (752)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5689999999998863
No 47
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=6.7e-38 Score=333.94 Aligned_cols=313 Identities=21% Similarity=0.224 Sum_probs=219.5
Q ss_pred cccccccccccccccccCCCCcccccc--cCCcccccccccccc---------cccC-CCCCCcEEEEcCcHHHHHHHHH
Q 012165 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA---------YSSF-ANENREFVIVGGGNAAGYAART 69 (469)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~-~~~~~~vvIIGgG~AGl~aA~~ 69 (469)
..++||||.+||++|+++|+..|.|.. .+++++.+.|+..+. ..+. ....++|+||||||||++||.+
T Consensus 476 i~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~ 555 (1012)
T TIGR03315 476 IYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYF 555 (1012)
T ss_pred HHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHH
Confidence 357899999999999999999999976 889999888876542 0111 2346899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (469)
Q Consensus 70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~ 149 (469)
|++.|+ +|+|+|+++.++.. . . +..+. .+++. +...+..+++...|++++++...
T Consensus 556 LAr~G~---~VTV~Ek~~~lGG~-l--~--~~IP~----~rlp~-------e~l~~~ie~l~~~GVe~~~g~~~------ 610 (1012)
T TIGR03315 556 LARAGH---PVTVFEKKEKPGGV-V--K--NIIPE----FRISA-------ESIQKDIELVKFHGVEFKYGCSP------ 610 (1012)
T ss_pred HHHCCC---eEEEEecccccCce-e--e--ecccc----cCCCH-------HHHHHHHHHHHhcCcEEEEeccc------
Confidence 999998 79999998764321 0 0 01111 11110 00123345677889999887321
Q ss_pred CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHH---hhhcCCeEEEEcCChHHHHHHHHH
Q 012165 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS---SLEKAKKVVVVGGGYIGMEVAAAA 226 (469)
Q Consensus 150 ~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---~~~~~~~vvVvG~G~~g~e~A~~l 226 (469)
.+.+++.....||+||||||+++...+.++|.. +++.. .......+.. ....+++|+|||||.+|+|+|..+
T Consensus 611 --d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~--avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a 685 (1012)
T TIGR03315 611 --DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLK--SLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAA 685 (1012)
T ss_pred --ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceee--HHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHH
Confidence 122233334679999999999865444445532 33332 1222222211 234689999999999999999998
Q ss_pred HhC-CC-eEe---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE--E------------EcCCC--C
Q 012165 227 VGW-KL-DTT---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--V------------KLEDG--S 273 (469)
Q Consensus 227 ~~~-g~-~v~---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~--v------------~~~~g--~ 273 (469)
.+. |. +|+ .+.+ ..+.||+++.+..+.+++ ++.+.. + ...+| .
T Consensus 686 ~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~-aleeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~ 761 (1012)
T TIGR03315 686 LRVPGVEKVTVVYRRTKRYMPASREELEE-ALEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETV 761 (1012)
T ss_pred HHhCCCceEEEEEccCccccccCHHHHHH-HHHcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeE
Confidence 876 64 565 1222 235799999988888876 122211 1 11223 3
Q ss_pred EEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCC-CCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHH
Q 012165 274 TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 351 (469)
Q Consensus 274 ~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~-~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~ 351 (469)
++++|.||+|+|.+|+++++++.++..+ +|++.||++ ++|+.|+|||+|||+..+. .+..|+.+|+.|
T Consensus 762 ~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~----------tVv~AIaqGr~A 831 (1012)
T TIGR03315 762 DLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPA----------TIVEAIADGRKA 831 (1012)
T ss_pred EEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCcc----------HHHHHHHHHHHH
Confidence 6899999999999999999998888865 578999985 8999999999999986543 456799999999
Q ss_pred HHHHhcC
Q 012165 352 IKALLSA 358 (469)
Q Consensus 352 a~~i~~~ 358 (469)
|.+|++.
T Consensus 832 A~nIl~~ 838 (1012)
T TIGR03315 832 ANAILSR 838 (1012)
T ss_pred HHHHhcc
Confidence 9999864
No 48
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.5e-36 Score=309.88 Aligned_cols=379 Identities=21% Similarity=0.278 Sum_probs=244.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCcccccC--------------CC--CCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLF--------------PL--DKKPA 109 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~l~~~~~~--------------~~--~~~~~ 109 (469)
+++||+|||||+||++||..|.+.|. +|+|||++. .+.. .+-.+|.++. +. .....
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~ 77 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKGP-LGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKI 77 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCc-cccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCcc
Confidence 56899999999999999999999987 799999843 2211 0111111110 00 00000
Q ss_pred CCCCCccccC---CCCCCCC-HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC-
Q 012165 110 RLPGFHTCVG---SGGERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY- 184 (469)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~-~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~- 184 (469)
++........ ....... ...++..+++++.+ ++..++. +++.+ +++++.||+||||||++ .|.++|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~--~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~~ 150 (460)
T PRK06292 78 DFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVDP--NTVEV-NGERIEAKNIVIATGSR---VPPIPGVWL 150 (460)
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEccC--CEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCcc
Confidence 0000000000 0000011 22344567887765 4544443 45555 66789999999999998 23334431
Q ss_pred --cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165 185 --LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG 244 (469)
Q Consensus 185 --~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g 244 (469)
...+++. +........+++++|||+|++|+|+|..|.++|.+|+ .+++.+++.
T Consensus 151 ~~~~~~~~~------~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~- 223 (460)
T PRK06292 151 ILGDRLLTS------DDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE- 223 (460)
T ss_pred cCCCcEECc------hHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-
Confidence 2223222 2222223467999999999999999999999999987 345667788
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceE
Q 012165 245 VKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF 319 (469)
Q Consensus 245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vf 319 (469)
|++++++.+.+++..++..+ .+.+.++ +++++|.+++++|++||+++ ++.++++.+ +|+|.||+++||+.|+||
T Consensus 224 I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~Iy 302 (460)
T PRK06292 224 FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIY 302 (460)
T ss_pred cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEE
Confidence 99999999999985433222 2333333 57999999999999999985 677888775 577999999999999999
Q ss_pred EeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEeecCCC----
Q 012165 320 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 393 (469)
Q Consensus 320 a~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---- 393 (469)
|+|||+..+. ....|..||+.+|.||++.... .+..+|+ ..|..+. +..+|.+..
T Consensus 303 A~GD~~~~~~----------~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~---~~~~~~~------~a~vG~te~~a~~ 363 (460)
T PRK06292 303 AAGDVNGKPP----------LLHEAADEGRIAAENAAGDVAGGVRYHPIPS---VVFTDPQ------IASVGLTEEELKA 363 (460)
T ss_pred EEEecCCCcc----------chhHHHHHHHHHHHHhcCCCCCCcCCCCCCe---EEECCCc------cEEeECCHHHHHh
Confidence 9999997532 3345999999999999863222 2344553 2332211 344554321
Q ss_pred ---cEE-EEcc-----------CCCcEEEEEEe--CCEEEEEEeecCChHHh-HHHHHHHhCCCCCCh--hhhcCCCcHH
Q 012165 394 ---ETI-EIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK--AKLQQASSVE 453 (469)
Q Consensus 394 ---~~~-~~~~-----------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~ 453 (469)
+.. ..-. ...-+.|+.++ +++|+|+++++.++.++ ..+..+|+.+.+++. ...+.||++.
T Consensus 364 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 443 (460)
T PRK06292 364 AGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLS 443 (460)
T ss_pred cCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHH
Confidence 110 0000 11236777764 48999999888777554 445567788888772 3346899999
Q ss_pred HHHHHHHhcCCcc
Q 012165 454 EALEIARAALPVE 466 (469)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (469)
|+++.|++.+..+
T Consensus 444 e~~~~~~~~~~~~ 456 (460)
T PRK06292 444 EGLRTALRDLFSK 456 (460)
T ss_pred HHHHHHHHHHhhh
Confidence 9999998876553
No 49
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.1e-36 Score=307.63 Aligned_cols=383 Identities=18% Similarity=0.262 Sum_probs=248.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC------CCCCC---CCCCC-cccccC-----C--------CCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AYAPY---ERPAL-TKGYLF-----P--------LDK 106 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~------~~~~~---~~~~l-~~~~~~-----~--------~~~ 106 (469)
..+|++|||||+||++||.++++.|. +|+|||+. ...+. ++... ++.++. . ...
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~---~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~ 79 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGL---KVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGI 79 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCC---eEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCc
Confidence 35899999999999999999999987 79999971 11111 01111 111100 0 000
Q ss_pred C----CCCCCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeC--CCcEEEeC--CCeEEEeccEEeccCCCCC
Q 012165 107 K----PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 107 ~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~--~~~~v~~~--~g~~~~yd~lVlAtG~~~~ 175 (469)
. ..+++..... .-..........++..+++++.+ ++..++. +.++|.+. ++++++||+||||||++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~ 158 (475)
T PRK06327 80 HVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR 158 (475)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC
Confidence 0 0000000000 00000001123345678999886 5666663 24567664 3457999999999999986
Q ss_pred cCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeH
Q 012165 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYE 237 (469)
Q Consensus 176 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~ 237 (469)
.+|.++ .++...+. .+.+......+++++|||+|++|+|+|..|.++|.+|+ .+.
T Consensus 159 ~~p~~~---~~~~~~~~----~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~ 231 (475)
T PRK06327 159 HLPGVP---FDNKIILD----NTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAA 231 (475)
T ss_pred CCCCCC---CCCceEEC----cHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHH
Confidence 444322 22221221 22222223457999999999999999999999999988 235
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC--C--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCC
Q 012165 238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQ 310 (469)
Q Consensus 238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~ 310 (469)
+.+++.||++++++.|++++.++ +.+ .+.+.+ | +++++|.+++++|++|++++ ++.+++..+ +|+|.||++
T Consensus 232 ~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~ 309 (475)
T PRK06327 232 KAFTKQGLDIHLGVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDH 309 (475)
T ss_pred HHHHHcCcEEEeCcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCC
Confidence 66788999999999999998643 333 355444 3 47999999999999999884 567788765 577999999
Q ss_pred CCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEee
Q 012165 311 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFG 389 (469)
Q Consensus 311 ~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G 389 (469)
+||+.|+|||+|||+..+. ....|..+|+.+|++|++... ..+..+|+. .|..+. +..+|
T Consensus 310 ~~Ts~~~VyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~---~~~~pe------~a~vG 370 (475)
T PRK06327 310 CRTNVPNVYAIGDVVRGPM----------LAHKAEEEGVAVAERIAGQKGHIDYNTIPWV---IYTSPE------IAWVG 370 (475)
T ss_pred CccCCCCEEEEEeccCCcc----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE---EeCCcc------eEEEe
Confidence 9999999999999997432 345699999999999986432 234555642 232211 33445
Q ss_pred cCCCc-------EEE-Ecc-----------CCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hh
Q 012165 390 DNVGE-------TIE-IGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AK 445 (469)
Q Consensus 390 ~~~~~-------~~~-~~~-----------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~ 445 (469)
....+ ... .-. ....|.|++++ +++|+|+++++.++.++.. +..+|+.+.+++. ..
T Consensus 371 lte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 450 (475)
T PRK06327 371 KTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARI 450 (475)
T ss_pred CCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence 43211 100 000 01236777774 6999999988887766554 4556788888762 23
Q ss_pred hcCCCcHHHHHHHHHhcCC
Q 012165 446 LQQASSVEEALEIARAALP 464 (469)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~ 464 (469)
++.||++.|.++.|+..+.
T Consensus 451 ~~~hPt~~e~~~~~~~~~~ 469 (475)
T PRK06327 451 CHAHPTLSEVWHEAALAVD 469 (475)
T ss_pred CcCCCChHHHHHHHHHHhc
Confidence 4689999999999986653
No 50
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-36 Score=312.34 Aligned_cols=301 Identities=19% Similarity=0.280 Sum_probs=203.9
Q ss_pred cEEEeCCcEEEEeCCCcEEEe-CCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEE
Q 012165 135 IEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (469)
Q Consensus 135 i~~~~~~~v~~id~~~~~v~~-~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVv 213 (469)
++++.+ ...-++ .++|.+ .+++++.||+||||||++|. .|..++.+.+++++. .+...+ ...+++++||
T Consensus 249 v~vi~G-~a~f~~--~~~v~v~~~g~~i~ad~lIIATGS~P~-~P~~~~~~~~~V~ts---~d~~~l---~~lpk~VvIV 318 (659)
T PTZ00153 249 VQVIYE-RGHIVD--KNTIKSEKSGKEFKVKNIIIATGSTPN-IPDNIEVDQKSVFTS---DTAVKL---EGLQNYMGIV 318 (659)
T ss_pred eEEEEe-EEEEec--CCeEEEccCCEEEECCEEEEcCCCCCC-CCCCCCCCCCcEEeh---HHhhhh---hhcCCceEEE
Confidence 666665 332233 344544 36678999999999999997 454334333445543 333333 2347899999
Q ss_pred cCChHHHHHHHHHHhCCCeEe------------------eeHHH-HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---
Q 012165 214 GGGYIGMEVAAAAVGWKLDTT------------------RYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--- 271 (469)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~v~------------------~~~~~-l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~--- 271 (469)
|+|++|+|+|..|..+|.+|+ .+.+. +++.||++++++.|++++..+++....+.+.+
T Consensus 319 GgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~ 398 (659)
T PTZ00153 319 GMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQT 398 (659)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccc
Confidence 999999999999999999988 22333 35789999999999999864333222343321
Q ss_pred ----C--------CEEeCCEEEEccCCccCCch--hhhcCCcccCCCEEeCCCCCCC------CCceEEeccccccCCcc
Q 012165 272 ----G--------STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPLKM 331 (469)
Q Consensus 272 ----g--------~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~Vd~~~~t~------~~~Vfa~GD~a~~~~~~ 331 (469)
+ +++++|.||+|+|++||++. ++..++..++|+|.||++|||+ +|+|||+|||+..+.
T Consensus 399 ~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~-- 476 (659)
T PTZ00153 399 GESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM-- 476 (659)
T ss_pred ccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc--
Confidence 1 37999999999999999987 4677887777789999999997 699999999986432
Q ss_pred CCcccccchHHHHHHHHHHHHHHHhcCC------------CC--CCCCCCceeeecccccCCCcceeeEEeecCCCc---
Q 012165 332 YDRTARVEHVDHARQSAQHCIKALLSAQ------------TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--- 394 (469)
Q Consensus 332 ~~~~~~~~~~~~A~~~a~~~a~~i~~~~------------~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~--- 394 (469)
....|..||+.++++|++.. .. .|..+|. ..|..+- +.++|.++.+
T Consensus 477 --------La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~---~ift~Pe------iA~VGlTE~eA~~ 539 (659)
T PTZ00153 477 --------LAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPS---VCYTTPE------LAFIGLTEKEAKE 539 (659)
T ss_pred --------CHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCE---EEECcCc------eEEeeCCHHHHHh
Confidence 33459999999999998642 11 2344553 1222110 2333332110
Q ss_pred ------E-------------EEEcc---------------------CCCcEEEEEEe--CCEEEEEEeecCChHHhHHH-
Q 012165 395 ------T-------------IEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL- 431 (469)
Q Consensus 395 ------~-------------~~~~~---------------------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~- 431 (469)
+ ...+. ....+.|++++ +++|+|+++++.++.++...
T Consensus 540 ~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~ 619 (659)
T PTZ00153 540 LYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEG 619 (659)
T ss_pred cCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHH
Confidence 0 00000 02336777663 69999999888888766554
Q ss_pred HHHHhCCCCCCh--hhhcCCCcHHHHHHHHHhcCC
Q 012165 432 PTLARSQPFVDK--AKLQQASSVEEALEIARAALP 464 (469)
Q Consensus 432 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 464 (469)
.-+|+.+.+++. ..++.|||+.|.+..|++++.
T Consensus 620 a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~ 654 (659)
T PTZ00153 620 VLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIA 654 (659)
T ss_pred HHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHH
Confidence 445788877763 234679999999999998765
No 51
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=336.26 Aligned_cols=318 Identities=19% Similarity=0.217 Sum_probs=229.4
Q ss_pred cccccccccccccccc--CCCCcccccc--cCCccccccccccccc------cc-CCCCCCcEEEEcCcHHHHHHHHHHH
Q 012165 3 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY------SS-FANENREFVIVGGGNAAGYAARTFV 71 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~-~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (469)
.++||||.+|||+||+ +|+..|.|.. .++++..++|+..+.. .+ ...+.++|+|||||||||+||.+|+
T Consensus 371 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La 450 (1006)
T PRK12775 371 YEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLV 450 (1006)
T ss_pred HHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 5789999999999998 8999999987 8899999998765431 11 1234689999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc
Q 012165 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (469)
Q Consensus 72 ~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~ 151 (469)
++|+ +|+|+|+.+..+.. +. +-.+. .+++ .+......+++++.|++++.++.+ + +
T Consensus 451 ~~G~---~VtV~E~~~~~GG~---l~--~gip~----~rl~-------~e~~~~~~~~l~~~Gv~~~~~~~v-g-----~ 505 (1006)
T PRK12775 451 KYGV---DVTVYEALHVVGGV---LQ--YGIPS----FRLP-------RDIIDREVQRLVDIGVKIETNKVI-G-----K 505 (1006)
T ss_pred HcCC---cEEEEecCCCCcce---ee--ccCCc----cCCC-------HHHHHHHHHHHHHCCCEEEeCCcc-C-----C
Confidence 9998 79999987654311 10 00010 1111 001123456788899999998543 2 2
Q ss_pred EEEeCCCe-EEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHHHHHHH---------hhhcCCeEEEEcCChHHH
Q 012165 152 TLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIGM 220 (469)
Q Consensus 152 ~v~~~~g~-~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---------~~~~~~~vvVvG~G~~g~ 220 (469)
.+++++-. ...||+||||||+. |+ .+.+||.+.+++++..++.+...+.. ....+++|+|||||.+|+
T Consensus 506 ~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~ 584 (1006)
T PRK12775 506 TFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAM 584 (1006)
T ss_pred ccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHH
Confidence 22222211 24699999999995 55 56678888888877655443332210 123679999999999999
Q ss_pred HHHHHHHhCCCe-Ee------------ee--HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------------
Q 012165 221 EVAAAAVGWKLD-TT------------RY--EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------------- 270 (469)
Q Consensus 221 e~A~~l~~~g~~-v~------------~~--~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--------------- 270 (469)
++|..+.++|.+ |+ .. .+.+++.||++++++.+.++..+++|++.++++.
T Consensus 585 D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~ 664 (1006)
T PRK12775 585 DCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKP 664 (1006)
T ss_pred HHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccc
Confidence 999999999875 44 11 2456789999999999999976556777666442
Q ss_pred --CC--CEEeCCEEEEccCCccCCchhhh-cCCccc-CCCEEeCC-----CCCCCCCceEEeccccccCCccCCcccccc
Q 012165 271 --DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMYDRTARVE 339 (469)
Q Consensus 271 --~g--~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~Vd~-----~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~ 339 (469)
+| .++++|.||+|+|..|++.++.. .++..+ +|.|.+|+ +++|++|+|||+|||+..+.
T Consensus 665 ~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~---------- 734 (1006)
T PRK12775 665 MPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA---------- 734 (1006)
T ss_pred cCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc----------
Confidence 12 26999999999999999876654 366654 57799986 78999999999999987543
Q ss_pred hHHHHHHHHHHHHHHHh
Q 012165 340 HVDHARQSAQHCIKALL 356 (469)
Q Consensus 340 ~~~~A~~~a~~~a~~i~ 356 (469)
.+..|+.+|+.+|.+|.
T Consensus 735 ~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 735 TVILAMGAGRRAARSIA 751 (1006)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34467788888887764
No 52
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=7.3e-37 Score=310.27 Aligned_cols=319 Identities=21% Similarity=0.236 Sum_probs=229.6
Q ss_pred ccccccccccccccc--cCCCCcccccc--cCCccccccccccccc------c---cCCCCCCcEEEEcCcHHHHHHHHH
Q 012165 3 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAART 69 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~ 69 (469)
.++||||.+||++|+ ++|+..|.|.. .++++..+.|+..+.. + +...+.++|+|||+|++|+++|..
T Consensus 80 ~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~ 159 (467)
T TIGR01318 80 HQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADI 159 (467)
T ss_pred HHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHH
Confidence 578999999999999 59999999986 8899999988765431 1 122356899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (469)
Q Consensus 70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~ 149 (469)
|++.|+ +|+++|+.+.+... +. +-.+ ..+++. +......+++++.|++++.++.+..
T Consensus 160 l~~~G~---~V~i~e~~~~~gG~---l~--~gip----~~~~~~-------~~~~~~~~~~~~~Gv~~~~~~~v~~---- 216 (467)
T TIGR01318 160 LARAGV---QVVVFDRHPEIGGL---LT--FGIP----SFKLDK-------AVLSRRREIFTAMGIEFHLNCEVGR---- 216 (467)
T ss_pred HHHcCC---eEEEEecCCCCCce---ee--ecCc----cccCCH-------HHHHHHHHHHHHCCCEEECCCEeCC----
Confidence 999987 79999988754211 00 0000 001110 0012335678889999999876521
Q ss_pred CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHH--HHHHH---------hhhcCCeEEEEcCChH
Q 012165 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGYI 218 (469)
Q Consensus 150 ~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~---------~~~~~~~vvVvG~G~~ 218 (469)
.+.+++ ....||+||+|||+.+...+.++|.+.+++++..++... ..+.. ....+++++|+|+|.+
T Consensus 217 --~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 293 (467)
T TIGR01318 217 --DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT 293 (467)
T ss_pred --ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence 122222 124799999999998754556788888888765332211 11100 0124689999999999
Q ss_pred HHHHHHHHHhCCC-eEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------CC--
Q 012165 219 GMEVAAAAVGWKL-DTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG-- 272 (469)
Q Consensus 219 g~e~A~~l~~~g~-~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------~g-- 272 (469)
|+++|..+.++|. +|+ ...+.+++.||++++++.+.++..++++++.++++. +|
T Consensus 294 a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~ 373 (467)
T TIGR01318 294 AMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRR 373 (467)
T ss_pred HHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCc
Confidence 9999999999985 576 112345688999999999999975556666555441 12
Q ss_pred ---------CEEeCCEEEEccCCccCC-chhhhcCCccc-CCCEEeC----CCCCCCCCceEEeccccccCCccCCcccc
Q 012165 273 ---------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD----GQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337 (469)
Q Consensus 273 ---------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~Vd----~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~ 337 (469)
+++++|.||+++|++|+. .+++..+++.+ +|++.|| .+++|+.|+|||+|||+..+.
T Consensus 374 ~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~-------- 445 (467)
T TIGR01318 374 RPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD-------- 445 (467)
T ss_pred cceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc--------
Confidence 369999999999999984 56777777765 5779999 688999999999999987532
Q ss_pred cchHHHHHHHHHHHHHHHhc
Q 012165 338 VEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 338 ~~~~~~A~~~a~~~a~~i~~ 357 (469)
.+..|+.+|+.+|.+|..
T Consensus 446 --~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 446 --LVVTAVAEGRQAAQGILD 463 (467)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 345699999999998863
No 53
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=6.2e-36 Score=305.97 Aligned_cols=377 Identities=18% Similarity=0.217 Sum_probs=240.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC----C----CCCC---CCCC-cccccC---------------C
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA----Y----APYE---RPAL-TKGYLF---------------P 103 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~----~----~~~~---~~~l-~~~~~~---------------~ 103 (469)
++||+||||||||++||..++++|. +|+|||+.. . ++.. +-.. +|.++. +
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~---~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGK---KVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 5899999999999999999999987 899999632 1 1110 0000 110000 0
Q ss_pred CC-CCCCCCCCCccccC---CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCC---CeEEEeccEEeccCCCCCc
Q 012165 104 LD-KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 104 ~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~---g~~~~yd~lVlAtG~~~~~ 176 (469)
.. ....++..+..... ..........++..+++++.+ ++... +.++|.+.+ +..++||+||||||++|+.
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~~--~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKLK--DEHTVSYGDNSQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEEc--cCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence 00 00000000000000 000000111223457777775 44433 345565532 3579999999999999874
Q ss_pred CCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHH
Q 012165 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQL 239 (469)
Q Consensus 177 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~ 239 (469)
++.++|... ...+ .+.+......+++++|||+|++|+|+|..|+++|.+|+ .+.+.
T Consensus 159 p~~i~G~~~----~~~~---~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~ 231 (499)
T PTZ00052 159 PEDVPGAKE----YSIT---SDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEY 231 (499)
T ss_pred CCCCCCccc----eeec---HHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHH
Confidence 334555321 1112 23333333457899999999999999999999999988 44567
Q ss_pred HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh--hhcCCccc-CCCEEeCCCCCCCCC
Q 012165 240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMP 316 (469)
Q Consensus 240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~Vd~~~~t~~~ 316 (469)
|++.||++++++.+.+++..+ +.+ .+.+.+|+++++|.||+++|++||++++ ++++++.+ +|++.+++. +|+.|
T Consensus 232 l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p 308 (499)
T PTZ00052 232 MKEQGTLFLEGVVPINIEKMD-DKI-KVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIP 308 (499)
T ss_pred HHHcCCEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCC
Confidence 888999999999999998543 333 4677889899999999999999999875 67888776 466777766 99999
Q ss_pred ceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCCcceeeEEeecCCC-
Q 012165 317 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 393 (469)
Q Consensus 317 ~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~- 393 (469)
+|||+|||+.... ..+..|..+|+.+|+||++... ..+..+|+ ..|..+- +..+|.+..
T Consensus 309 ~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~---~ift~p~------ia~vGlte~~ 370 (499)
T PTZ00052 309 NIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPT---TIFTPIE------YGACGYSSEA 370 (499)
T ss_pred CEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCe---EEecCCc------ceeecCCHHH
Confidence 9999999996321 1455699999999999986432 23445564 3343221 223332211
Q ss_pred --------cEEE------------------Ecc---------CCCcEEEEEEe---CCEEEEEEeecCChHHhHHH-HHH
Q 012165 394 --------ETIE------------------IGN---------FDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTL 434 (469)
Q Consensus 394 --------~~~~------------------~~~---------~~~~~~~~~~~---~~~l~g~~~~~~~~~~~~~~-~~~ 434 (469)
.... .+. ....|.|+.++ +++|+|+++++.++.++... ..+
T Consensus 371 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~a 450 (499)
T PTZ00052 371 AIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLA 450 (499)
T ss_pred HHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHH
Confidence 0000 000 01236677653 59999999988888776554 455
Q ss_pred HhCCCCCCh--hhhcCCCcHHHHHHHHHh
Q 012165 435 ARSQPFVDK--AKLQQASSVEEALEIARA 461 (469)
Q Consensus 435 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 461 (469)
|+.+.+++. ..++.|||+.|+++.|.-
T Consensus 451 i~~~~t~~~l~~~~~~hPt~sE~~~~~~~ 479 (499)
T PTZ00052 451 LKLGAKKSDFDSMIGIHPTDAEVFMNLSV 479 (499)
T ss_pred HHCCCCHHHHhcccccCCCCchhhEEEEe
Confidence 788877762 334689999999876543
No 54
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=5.8e-37 Score=322.26 Aligned_cols=318 Identities=23% Similarity=0.261 Sum_probs=221.9
Q ss_pred cccccccccccccccccCCCCcccccc--cCCccccccccccccc-------cc--CCCCCCcEEEEcCcHHHHHHHHHH
Q 012165 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY-------SS--FANENREFVIVGGGNAAGYAARTF 70 (469)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~--~~~~~~~vvIIGgG~AGl~aA~~L 70 (469)
..++||||.+||++|+++|+..|.|.. .++.+..+.++..+.. .+ .....++|+|||||+||+++|..|
T Consensus 133 ~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~L 212 (652)
T PRK12814 133 IKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYL 212 (652)
T ss_pred HHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 357899999999999999999999876 6677777776655321 11 223568999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC
Q 012165 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (469)
Q Consensus 71 ~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~ 150 (469)
++.|+ +|+|+|+++.++.. +. +..+ ..+++. .......+.+.+.|+++++++.+ +++
T Consensus 213 a~~G~---~Vtv~e~~~~~GG~---l~--~gip----~~~~~~-------~~~~~~~~~l~~~Gv~i~~~~~v-~~d--- 269 (652)
T PRK12814 213 LRKGH---DVTIFDANEQAGGM---MR--YGIP----RFRLPE-------SVIDADIAPLRAMGAEFRFNTVF-GRD--- 269 (652)
T ss_pred HHCCC---cEEEEecCCCCCce---ee--ecCC----CCCCCH-------HHHHHHHHHHHHcCCEEEeCCcc-cCc---
Confidence 99987 79999998764311 00 0001 011110 00112345667889999987543 222
Q ss_pred cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCC
Q 012165 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230 (469)
Q Consensus 151 ~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g 230 (469)
+++++.. ..||+||||||+.+...+.++|.+.++++...++............+++|+|||+|.+|+|+|..+.++|
T Consensus 270 --v~~~~~~-~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~G 346 (652)
T PRK12814 270 --ITLEELQ-KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLG 346 (652)
T ss_pred --cCHHHHH-hhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 2222211 3599999999998654456778777777653222211111112356899999999999999999999998
Q ss_pred C-eEe---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCc-EEEEEcC---------------CC--CEEe
Q 012165 231 L-DTT---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGR-VAAVKLE---------------DG--STID 276 (469)
Q Consensus 231 ~-~v~---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~-v~~v~~~---------------~g--~~i~ 276 (469)
. +|+ .+.+ ..+.||+++++..+.++...+++. +..+.+. +| .+++
T Consensus 347 a~~Vtlv~r~~~~~mpa~~~ei~~-a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~ 425 (652)
T PRK12814 347 AESVTILYRRTREEMPANRAEIEE-ALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQ 425 (652)
T ss_pred CCeEEEeeecCcccCCCCHHHHHH-HHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEE
Confidence 6 465 1222 346799999999998887532221 2222221 22 2599
Q ss_pred CCEEEEccCCccCCchhhhcCCccc-CCCEEeCC-CCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHH
Q 012165 277 ADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 354 (469)
Q Consensus 277 ~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~-~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~ 354 (469)
+|.||+++|..|++++++..++..+ +|+|.||+ +++|+.|+|||+||++..+. .+..|+.+|+.+|.+
T Consensus 426 ~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~----------~v~~Ai~~G~~AA~~ 495 (652)
T PRK12814 426 ADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD----------IAINAVEQGKRAAHA 495 (652)
T ss_pred CCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch----------HHHHHHHHHHHHHHH
Confidence 9999999999999999988888876 57899996 68999999999999987543 455688889988888
Q ss_pred Hh
Q 012165 355 LL 356 (469)
Q Consensus 355 i~ 356 (469)
|.
T Consensus 496 I~ 497 (652)
T PRK12814 496 ID 497 (652)
T ss_pred HH
Confidence 74
No 55
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=8.7e-36 Score=295.31 Aligned_cols=276 Identities=22% Similarity=0.315 Sum_probs=211.5
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (469)
+|||||||+||+.+|.+|+++..++.+|+|||++++++|.. .++. ++.+ .....++ .....+++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~~-~~~g-~~~~~~~-----------~~~~~~~~~~ 66 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLPG-MIAG-HYSLDEI-----------RIDLRRLARQ 66 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhhH-HHhe-eCCHHHh-----------cccHHHHHHh
Confidence 58999999999999999986633467999999999988773 3332 2211 1111111 1234567788
Q ss_pred CCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHH----HHHhh---h
Q 012165 133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---E 205 (469)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~----~~~~~---~ 205 (469)
++++++.+ +|+.+|+++++|.+++|++++||+||||||+.+. .|.++|. .++++.+++..++.. +.+.. .
T Consensus 67 ~gv~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~-~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 67 AGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP-LSGVEGA-ADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred cCCEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCC-CCCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 89999885 8999999999999999988999999999999987 5666663 455666777666554 33322 1
Q ss_pred cCCeEEEEcCChHHHHHHHHHHh----CC--CeEe-----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCC
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVG----WK--LDTT-----------------RYEQLYQQNGVKFVKGASIKNLEAGSDG 262 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~----~g--~~v~-----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~ 262 (469)
.+++++|+|+|++|+|+|..|.+ ++ .+++ .+.+.+++.||++++++.+++++. +
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~- 220 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--G- 220 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C-
Confidence 45799999999999999999875 23 2444 456778899999999999999863 2
Q ss_pred cEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCC-CCCceEEeccccccCCccCCcccccch
Q 012165 263 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEH 340 (469)
Q Consensus 263 ~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t-~~~~Vfa~GD~a~~~~~~~~~~~~~~~ 340 (469)
.+.+++|+++++|.+|+++|.+|+ .++...++..+ .|++.||+++|| ++|||||+|||+..+.... ...
T Consensus 221 ---~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~-----~~~ 291 (364)
T TIGR03169 221 ---ALILADGRTLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR-----PKA 291 (364)
T ss_pred ---eEEeCCCCEEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----CCc
Confidence 467788999999999999999998 46677777764 588999999998 9999999999998653211 123
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012165 341 VDHARQSAQHCIKALLS 357 (469)
Q Consensus 341 ~~~A~~~a~~~a~~i~~ 357 (469)
...|..||+.+|+||..
T Consensus 292 ~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 292 GVYAVRQAPILAANLRA 308 (364)
T ss_pred hHHHHHhHHHHHHHHHH
Confidence 45689999999999864
No 56
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=3.5e-36 Score=317.83 Aligned_cols=319 Identities=20% Similarity=0.224 Sum_probs=228.0
Q ss_pred cccccccccccccccc--CCCCcccccc--cCCccccccccccccc------c---cCCCCCCcEEEEcCcHHHHHHHHH
Q 012165 3 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAART 69 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~ 69 (469)
.++||||.+|||+||+ +|+.+|++.. .+|++..++|++.+.. + +...+.++|+|||||||||+||..
T Consensus 266 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~ 345 (654)
T PRK12769 266 HQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADV 345 (654)
T ss_pred HHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHH
Confidence 5789999999999995 8999999976 7899999988765431 1 112356899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (469)
Q Consensus 70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~ 149 (469)
|++.|+ +|+|+|+.+.++.. +. +-.+ ..+++. +...+..+++++.|++++.++.+.
T Consensus 346 L~~~G~---~V~V~E~~~~~GG~---l~--~gip----~~~l~~-------~~~~~~~~~~~~~Gv~~~~~~~v~----- 401 (654)
T PRK12769 346 LARNGV---AVTVYDRHPEIGGL---LT--FGIP----AFKLDK-------SLLARRREIFSAMGIEFELNCEVG----- 401 (654)
T ss_pred HHHCCC---eEEEEecCCCCCce---ee--ecCC----CccCCH-------HHHHHHHHHHHHCCeEEECCCEeC-----
Confidence 999998 79999987654311 00 0001 011110 001223466788899999886552
Q ss_pred CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHH--HHHHHHH---------hhhcCCeEEEEcCChH
Q 012165 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALIS---------SLEKAKKVVVVGGGYI 218 (469)
Q Consensus 150 ~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~---------~~~~~~~vvVvG~G~~ 218 (469)
..+.+.+. ...||+|++|||+.....+.+++.+.+|++...++. ....+.. ....+++|+|||+|.+
T Consensus 402 -~~i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 479 (654)
T PRK12769 402 -KDISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDT 479 (654)
T ss_pred -CcCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHH
Confidence 11111111 137999999999875444566777778876532211 0011100 0124689999999999
Q ss_pred HHHHHHHHHhCCC-eEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------CC--
Q 012165 219 GMEVAAAAVGWKL-DTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG-- 272 (469)
Q Consensus 219 g~e~A~~l~~~g~-~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------~g-- 272 (469)
|+++|..+.++|. +|+ ...+.+++.||+++++..+.++..++++++.+|++. +|
T Consensus 480 a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~ 559 (654)
T PRK12769 480 AMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRR 559 (654)
T ss_pred HHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCC
Confidence 9999999888886 465 124457789999999999999975556777666541 22
Q ss_pred ---------CEEeCCEEEEccCCccCC-chhhhcCCccc-CCCEEeCC----CCCCCCCceEEeccccccCCccCCcccc
Q 012165 273 ---------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKMYDRTAR 337 (469)
Q Consensus 273 ---------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~Vd~----~~~t~~~~Vfa~GD~a~~~~~~~~~~~~ 337 (469)
.++++|.||+|+|+.|+. .+++..+++.+ +|.|.||+ +++|+.|+|||+||++..+.
T Consensus 560 ~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~-------- 631 (654)
T PRK12769 560 RPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD-------- 631 (654)
T ss_pred cceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc--------
Confidence 259999999999999985 57788888876 57789985 48999999999999987543
Q ss_pred cchHHHHHHHHHHHHHHHhc
Q 012165 338 VEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 338 ~~~~~~A~~~a~~~a~~i~~ 357 (469)
.+..|+.+|+.+|.+|..
T Consensus 632 --~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 632 --LVVTAMAEGRHAAQGIID 649 (654)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 445699999999999864
No 57
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.9e-35 Score=270.75 Aligned_cols=385 Identities=21% Similarity=0.355 Sum_probs=261.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCcccccCCC------------------CCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFPL------------------DKK 107 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~-~~l~~~~~~~~------------------~~~ 107 (469)
..+|++|||+||+|..||...++.|+ +-..||++..++.. . +--||.++... ...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl---kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~ 114 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL---KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV 114 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc---eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence 56999999999999999999999998 67888887654321 0 00122222110 000
Q ss_pred CCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCCCCC
Q 012165 108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 182 (469)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~g 182 (469)
..+++.+.... -.....-....+++++++++.| .-.-+++..-.+.-.||+ .+.++++||||||.-..+ ||
T Consensus 115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~---PG 190 (506)
T KOG1335|consen 115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPF---PG 190 (506)
T ss_pred ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCC---CC
Confidence 11111100000 0000011223456778888876 444566666566666664 689999999999964323 34
Q ss_pred CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG 244 (469)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g 244 (469)
-.+++-.-. .+...+...+-+++++|||+|.+|+|+...+.++|.+|| .+++.|++.|
T Consensus 191 I~IDekkIV----SStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQg 266 (506)
T KOG1335|consen 191 ITIDEKKIV----SSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQG 266 (506)
T ss_pred eEecCceEE----ecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcC
Confidence 333332211 122223334568999999999999999999999999998 5678899999
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEcCC---C--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCC
Q 012165 245 VKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 316 (469)
Q Consensus 245 V~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~ 316 (469)
++|++++++...+.+.+|.+ .+++.+ + ++++||.+++++|++|-+.- +++.|++.| ++.|.||..++|.+|
T Consensus 267 ikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP 345 (506)
T KOG1335|consen 267 IKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVP 345 (506)
T ss_pred ceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCC
Confidence 99999999999998878755 455543 2 57999999999999998764 677888876 678999999999999
Q ss_pred ceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC-CCCCCCCCceeeecccccCCCcceeeEEeecCCCcE
Q 012165 317 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 395 (469)
Q Consensus 317 ~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~ 395 (469)
+||++||+...|.. .| -|..+|-.+.+.|.++. -..|.-+|- ..|.++- +.++|.++...
T Consensus 346 ~i~~IGDv~~gpML--------Ah--kAeeegI~~VE~i~g~~~hv~ynciP~---v~ythPE------vawVG~TEeql 406 (506)
T KOG1335|consen 346 HIYAIGDVTLGPML--------AH--KAEEEGIAAVEGIAGGHGHVDYNCIPS---VVYTHPE------VAWVGKTEEQL 406 (506)
T ss_pred ceEEecccCCcchh--------hh--hhhhhchhheeeecccCcccccCCCCc---eeecccc------eeeeccchhhH
Confidence 99999999988762 23 38889998888887654 345666673 4555543 34455543211
Q ss_pred ------EEEccC-------------CCcEEEEEE--eCCEEEEEEeecCChHHhHH-HHHHHhCCCCCChhh-h-cCCCc
Q 012165 396 ------IEIGNF-------------DPKIATFWI--DSGKLKGVLVESGSPEEFQL-LPTLARSQPFVDKAK-L-QQASS 451 (469)
Q Consensus 396 ------~~~~~~-------------~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~~~ 451 (469)
+..|.+ ...|.++.. +++||+|++++++++.++.. ....++-+...+... + +.||+
T Consensus 407 keegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPT 486 (506)
T KOG1335|consen 407 KEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPT 486 (506)
T ss_pred HhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCc
Confidence 112221 123666655 46999999998888866554 344456666665433 2 78999
Q ss_pred HHHHHHHHHhcCCc
Q 012165 452 VEEALEIARAALPV 465 (469)
Q Consensus 452 ~~~~~~~~~~~~~~ 465 (469)
++|++++|.++++.
T Consensus 487 lSEa~kEa~~aA~~ 500 (506)
T KOG1335|consen 487 LSEAFKEANMAAYD 500 (506)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998876
No 58
>PRK13984 putative oxidoreductase; Provisional
Probab=100.00 E-value=2e-35 Score=310.29 Aligned_cols=313 Identities=20% Similarity=0.230 Sum_probs=218.7
Q ss_pred ccccccccccccccccCCCCcccccc--cCCccccccccccccc----------ccCCCCCCcEEEEcCcHHHHHHHHHH
Q 012165 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY----------SSFANENREFVIVGGGNAAGYAARTF 70 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~vvIIGgG~AGl~aA~~L 70 (469)
..+||||.+||++|+++|+.+|.+.. .++.+..++|...+.. .+.....++|+|||+|+||+++|..|
T Consensus 223 ~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L 302 (604)
T PRK13984 223 YKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFL 302 (604)
T ss_pred HhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHH
Confidence 35799999999999999999999975 6777776665433221 11234578999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC
Q 012165 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (469)
Q Consensus 71 ~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~ 150 (469)
++.|+ +|+|+|+++..... +. +..+......++ ..+..+++++.|++++.++.|.. +
T Consensus 303 ~~~G~---~v~vie~~~~~gG~---~~--~~i~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~-~--- 359 (604)
T PRK13984 303 ATMGY---EVTVYESLSKPGGV---MR--YGIPSYRLPDEA-----------LDKDIAFIEALGVKIHLNTRVGK-D--- 359 (604)
T ss_pred HHCCC---eEEEEecCCCCCce---Ee--ecCCcccCCHHH-----------HHHHHHHHHHCCcEEECCCEeCC-c---
Confidence 99987 79999988764311 00 101101000000 12234678889999999866521 1
Q ss_pred cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhh-------hcCCeEEEEcCChHHHHHH
Q 012165 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-------EKAKKVVVVGGGYIGMEVA 223 (469)
Q Consensus 151 ~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~-------~~~~~vvVvG~G~~g~e~A 223 (469)
+..++ ....||+||+|||+.+.+.+.++|.+.+++++.. .....+...+ ..+++++|||||++|+|+|
T Consensus 360 --~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~--~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 360 --IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL--PLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred --CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHH--HHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHH
Confidence 11111 1357999999999875445667787777776532 2222222211 2368999999999999999
Q ss_pred HHHHhCCC------eEe----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--------CC-
Q 012165 224 AAAVGWKL------DTT----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------DG- 272 (469)
Q Consensus 224 ~~l~~~g~------~v~----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--------~g- 272 (469)
..+.+++. +++ .+.+ +.+.||+++++..+.++.. +++++..+++. +|
T Consensus 435 ~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~ 512 (604)
T PRK13984 435 RSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGR 512 (604)
T ss_pred HHHHhccccccCceEEEEeccccCcccCCCCHHHHHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCC
Confidence 99988753 343 1122 3468999999988888864 35666555432 12
Q ss_pred ----------CEEeCCEEEEccCCccCCchhhh---cCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccc
Q 012165 273 ----------STIDADTIVIGIGAKPTVSPFER---VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 339 (469)
Q Consensus 273 ----------~~i~~D~vi~a~G~~p~~~~~~~---~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~ 339 (469)
+++++|.||+++|++|+++++.. .++..++|+|.||+++||++|+|||+|||+..+.
T Consensus 513 ~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~---------- 582 (604)
T PRK13984 513 FNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD---------- 582 (604)
T ss_pred ccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH----------
Confidence 36999999999999999887653 2355556789999999999999999999997542
Q ss_pred hHHHHHHHHHHHHHHHh
Q 012165 340 HVDHARQSAQHCIKALL 356 (469)
Q Consensus 340 ~~~~A~~~a~~~a~~i~ 356 (469)
...|+.+|+.+|.+|.
T Consensus 583 -~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 583 -IIHGVADGYWAAEGID 598 (604)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 2458888999888875
No 59
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=100.00 E-value=3.4e-35 Score=299.15 Aligned_cols=318 Identities=19% Similarity=0.271 Sum_probs=218.8
Q ss_pred ccccccccccccccccCCCCcccccc--cCCccccccccccccc------c---cCCCCCCcEEEEcCcHHHHHHHHHHH
Q 012165 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAARTFV 71 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (469)
.++||||.+||++|+++|+..|+|.. .++++..++|...... . +.....++|+|||||+||+++|..|+
T Consensus 84 ~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~ 163 (485)
T TIGR01317 84 HATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLN 163 (485)
T ss_pred HhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHH
Confidence 46899999999999999999999986 7899888877654221 1 11234579999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc
Q 012165 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (469)
Q Consensus 72 ~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~ 151 (469)
+.|+ +|+|+|+++..... +. +-.+. .+++. .......+++++.|++++.++.+. .+...
T Consensus 164 ~~g~---~V~v~e~~~~~gG~---l~--~gip~----~~~~~-------~~~~~~~~~~~~~Gv~~~~~~~v~-~~~~~- 222 (485)
T TIGR01317 164 RAGH---TVTVFEREDRCGGL---LM--YGIPN----MKLDK-------AIVDRRIDLLSAEGIDFVTNTEIG-VDISA- 222 (485)
T ss_pred HcCC---eEEEEecCCCCCce---ee--ccCCC----ccCCH-------HHHHHHHHHHHhCCCEEECCCEeC-CccCH-
Confidence 9987 79999998754211 00 00000 01100 001233467788999999986653 22111
Q ss_pred EEEeCCCeEEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHH-HHHH---------HhhhcCCeEEEEcCChHHH
Q 012165 152 TLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADA-DALI---------SSLEKAKKVVVVGGGYIGM 220 (469)
Q Consensus 152 ~v~~~~g~~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~-~~~~---------~~~~~~~~vvVvG~G~~g~ 220 (469)
++....||+|++|||+. |+ .+.++|.+.+++++..++... .... .....+++|+|||+|++|+
T Consensus 223 -----~~~~~~~d~VilAtGa~~~~-~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~ 296 (485)
T TIGR01317 223 -----DELKEQFDAVVLAGGATKPR-DLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGA 296 (485)
T ss_pred -----HHHHhhCCEEEEccCCCCCC-cCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHH
Confidence 11235799999999998 55 456788888888875432211 1110 1113679999999999999
Q ss_pred HHHHHHHhCCC-eEeee------------------------HHHHHH-----cCcEE-EcCCeEEEEEeCCCCcEEEEEc
Q 012165 221 EVAAAAVGWKL-DTTRY------------------------EQLYQQ-----NGVKF-VKGASIKNLEAGSDGRVAAVKL 269 (469)
Q Consensus 221 e~A~~l~~~g~-~v~~~------------------------~~~l~~-----~gV~~-~~~~~v~~i~~~~~~~v~~v~~ 269 (469)
|+|..+.+++. +|+.+ .+...+ .||.+ +++..+.++..++++++.++.+
T Consensus 297 d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~ 376 (485)
T TIGR01317 297 DCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRT 376 (485)
T ss_pred HHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEE
Confidence 99888777764 56511 011122 34433 4577788887544466666653
Q ss_pred --------CCC-----------CEEeCCEEEEccCCc-cCCchhhhcCCccc-CCCEEe-CCCCCCCCCceEEecccccc
Q 012165 270 --------EDG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAF 327 (469)
Q Consensus 270 --------~~g-----------~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~V-d~~~~t~~~~Vfa~GD~a~~ 327 (469)
++| +++++|.||+++|.. |++.+++..+++.+ +|.+.+ |++++|+.|+|||+|||+..
T Consensus 377 ~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g 456 (485)
T TIGR01317 377 VRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRG 456 (485)
T ss_pred EEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCC
Confidence 133 269999999999996 88888988888865 567754 57899999999999999864
Q ss_pred CCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165 328 PLKMYDRTARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 328 ~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
+. ....|+.+|+.+|.+|..
T Consensus 457 ~~----------~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 457 QS----------LIVWAINEGRKAAAAVDR 476 (485)
T ss_pred cH----------HHHHHHHHHHHHHHHHHH
Confidence 32 344588889988888753
No 60
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=1.1e-34 Score=305.00 Aligned_cols=320 Identities=19% Similarity=0.216 Sum_probs=227.0
Q ss_pred cccccccccccccccc--cCCCCcccccc--cCCccccccccccccc---------ccCCCCCCcEEEEcCcHHHHHHHH
Q 012165 2 ASVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAAR 68 (469)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~vvIIGgG~AGl~aA~ 68 (469)
..++||||.+|||+|| ++|+.+|.|.. .++++..++|+..+.. .+.....++|+|||||+|||++|.
T Consensus 248 ~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~ 327 (639)
T PRK12809 248 CHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCAD 327 (639)
T ss_pred HHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHH
Confidence 3578999999999999 58999999976 7899999998766431 112235789999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeC
Q 012165 69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI 148 (469)
Q Consensus 69 ~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~ 148 (469)
.|++.|+ +|+|+|+++.++.. +. + .....+++. .......+++++.|+++++++.+.
T Consensus 328 ~L~~~G~---~Vtv~e~~~~~GG~---l~--~----gip~~~l~~-------~~~~~~~~~~~~~Gv~~~~~~~v~---- 384 (639)
T PRK12809 328 ILARAGV---QVDVFDRHPEIGGM---LT--F----GIPPFKLDK-------TVLSQRREIFTAMGIDFHLNCEIG---- 384 (639)
T ss_pred HHHHcCC---cEEEEeCCCCCCCe---ee--c----cCCcccCCH-------HHHHHHHHHHHHCCeEEEcCCccC----
Confidence 9999998 79999998764311 00 0 001111110 001223467788999999987652
Q ss_pred CCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHH--HHHHH---------hhhcCCeEEEEcCCh
Q 012165 149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGY 217 (469)
Q Consensus 149 ~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~---------~~~~~~~vvVvG~G~ 217 (469)
+.+.+.+ ....||+|++|||+.+...+.+++.+.+|+++..++... ..+.. ....+++++|+|+|.
T Consensus 385 --~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~ 461 (639)
T PRK12809 385 --RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGD 461 (639)
T ss_pred --CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcH
Confidence 1122222 124799999999998654456778777887763222111 01100 112578999999999
Q ss_pred HHHHHHHHHHhCCC-eEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---C------CC-
Q 012165 218 IGMEVAAAAVGWKL-DTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---E------DG- 272 (469)
Q Consensus 218 ~g~e~A~~l~~~g~-~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~------~g- 272 (469)
+++++|..+.++|. +|+ .....+++.||++++++.++++..++++++.++.+ . +|
T Consensus 462 ~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~ 541 (639)
T PRK12809 462 TTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGR 541 (639)
T ss_pred HHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCC
Confidence 99999999888885 566 11123467899999999999997655676665533 1 12
Q ss_pred ----------CEEeCCEEEEccCCccCC-chhhhcCCccc-CCCEEeCC----CCCCCCCceEEeccccccCCccCCccc
Q 012165 273 ----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKMYDRTA 336 (469)
Q Consensus 273 ----------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~Vd~----~~~t~~~~Vfa~GD~a~~~~~~~~~~~ 336 (469)
.++++|.||+|+|+.|+. .++++.+++.+ +|.|.||+ +++|+.|+|||+||++..+.
T Consensus 542 ~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~------- 614 (639)
T PRK12809 542 RRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD------- 614 (639)
T ss_pred ccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch-------
Confidence 368999999999999974 56777888776 57788885 48999999999999987533
Q ss_pred ccchHHHHHHHHHHHHHHHhc
Q 012165 337 RVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 337 ~~~~~~~A~~~a~~~a~~i~~ 357 (469)
.+..|+.+|+.+|.+|..
T Consensus 615 ---~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 615 ---LVVTAMAAGRQAARDMLT 632 (639)
T ss_pred ---HHHHHHHHHHHHHHHHHH
Confidence 455699999999988864
No 61
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=2.8e-33 Score=270.08 Aligned_cols=272 Identities=25% Similarity=0.329 Sum_probs=197.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCHhHH
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY 130 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 130 (469)
+||+|||||+||++||..|++.|+ +|+|+|+++... . +... ....++|++.. ..+........+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg-~-------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL---KTLIIEGMEPGG-Q-------LTTT--TEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCc-c-------eeec--ccccccCCCCCCCChHHHHHHHHHHH
Confidence 589999999999999999999987 799999876211 0 0000 00111121110 00011123345567
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc---CcEEEecCHHHHHHHHHhhh
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE 205 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~ 205 (469)
++.+++++. ++|+.+++.+. .+.+.++.++.||+||+|||+.|. .|.+||... .++++..... ....
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~-~~~i~g~~~~~~~~~~~~~~~~------~~~~ 139 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR-KLGIPGEDEFLGRGVSYCATCD------GPFF 139 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc-cCCCCChhhcCCccEEEeeecC------hhhc
Confidence 788999988 79999998765 566777788999999999999886 455565321 2333322111 1234
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcC--
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE-- 270 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~-- 270 (469)
.+++++|||+|.+|+|+|..|.+.+.+++ .+.+.+++. ||++++++.+++++.+ +.+..+++.
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~ 217 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNT 217 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEec
Confidence 67899999999999999999999988887 235667777 9999999999999843 344445442
Q ss_pred -CC--CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHH
Q 012165 271 -DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 346 (469)
Q Consensus 271 -~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~ 346 (469)
+| +++++|.+|+++|++|+.++++.+ +..+ +|++.||++++|++||||++|||+... ...+..|+.
T Consensus 218 ~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~---------~~~~~~A~~ 287 (300)
T TIGR01292 218 VTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKG---------YRQAVTAAG 287 (300)
T ss_pred CCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcc---------hhhhhhhhh
Confidence 23 579999999999999999888876 5544 578999999999999999999999742 125667999
Q ss_pred HHHHHHHHHh
Q 012165 347 SAQHCIKALL 356 (469)
Q Consensus 347 ~a~~~a~~i~ 356 (469)
+|+.+|.+|.
T Consensus 288 ~g~~aa~~i~ 297 (300)
T TIGR01292 288 DGCIAALSAE 297 (300)
T ss_pred hHHHHHHHHH
Confidence 9999999986
No 62
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=294.49 Aligned_cols=318 Identities=23% Similarity=0.242 Sum_probs=217.7
Q ss_pred cccccccccccccccccCCCCcccccc--cCCcccccccccccc------cc--cCCCCCCcEEEEcCcHHHHHHHHHHH
Q 012165 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA------YS--SFANENREFVIVGGGNAAGYAARTFV 71 (469)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~--~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (469)
..++||||.+|||+|+++|+..|.|.. .+++++++.|...+. .. +.....++|+|||+||+||++|..|+
T Consensus 78 ~~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~ 157 (564)
T PRK12771 78 LTKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLR 157 (564)
T ss_pred HHHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 357899999999999999999999987 788888888864221 11 12345689999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcE-EEEeCCC
Q 012165 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV-TSIDIEK 150 (469)
Q Consensus 72 ~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v-~~id~~~ 150 (469)
+.|+ +|+++|+.+..+.. +. +..+ ..+++. +......+++.+.|+++..++.+ ..+..+.
T Consensus 158 ~~G~---~V~v~e~~~~~GG~---l~--~gip----~~~~~~-------~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~ 218 (564)
T PRK12771 158 RMGH---AVTIFEAGPKLGGM---MR--YGIP----AYRLPR-------EVLDAEIQRILDLGVEVRLGVRVGEDITLEQ 218 (564)
T ss_pred HCCC---eEEEEecCCCCCCe---ee--ecCC----CccCCH-------HHHHHHHHHHHHCCCEEEeCCEECCcCCHHH
Confidence 9987 79999998765321 00 0011 111110 00112335667889998887554 2221111
Q ss_pred cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCC
Q 012165 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230 (469)
Q Consensus 151 ~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g 230 (469)
....||++++|||+.......+++....++.....+............+++++|+|+|.++++.+..+.+++
T Consensus 219 --------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lg 290 (564)
T PRK12771 219 --------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLG 290 (564)
T ss_pred --------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcC
Confidence 113589999999987543344556555565443222111110111234789999999999999999888887
Q ss_pred -CeEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcE----EEEEc----CCC---------CEEeCC
Q 012165 231 -LDTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRV----AAVKL----EDG---------STIDAD 278 (469)
Q Consensus 231 -~~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v----~~v~~----~~g---------~~i~~D 278 (469)
.+++ ...+...+.||+++++..+.++..++++.+ ..+.+ ++| +++++|
T Consensus 291 a~~v~ii~r~~~~~~~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D 370 (564)
T PRK12771 291 AEEVTIVYRRTREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEAD 370 (564)
T ss_pred CCEEEEEEecCcccCCCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECC
Confidence 3343 112234568999999999999975444432 12221 222 379999
Q ss_pred EEEEccCCccCCchhhh-cCCcccCCCEEeCC-CCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165 279 TIVIGIGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 279 ~vi~a~G~~p~~~~~~~-~gl~~~~g~i~Vd~-~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
.||+|+|..|++.++++ .++..++|+|.||+ +++|++|+|||+|||+..+. .+..|+.+|+.+|.+|.
T Consensus 371 ~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~----------~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 371 LVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR----------TVTTAIGHGKKAARNID 440 (564)
T ss_pred EEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCch----------HHHHHHHHHHHHHHHHH
Confidence 99999999999888875 56764568899998 78899999999999987432 45678888888888873
No 63
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=5.6e-33 Score=285.75 Aligned_cols=275 Identities=25% Similarity=0.347 Sum_probs=195.8
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (469)
...+||+||||||||++||.+|++.|+ +++|+++.... .+....+. ++.++....+........
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~---~v~li~~~~GG~~~~~~~~~------------~~~~~~~~~~~~l~~~l~ 274 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL---RTAMVAERIGGQVKDTVGIE------------NLISVPYTTGSQLAANLE 274 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCccccCcCcc------------cccccCCCCHHHHHHHHH
Confidence 456999999999999999999999987 79999753110 01111110 111110001111122345
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHH
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~ 202 (469)
+++++++++++.+++|..++.+. ..+++.+|..+.||+||+|||+.++ .|.++|.. .+++++..... .
T Consensus 275 ~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~-~~~ipG~~~~~~~~v~~~~~~~------~ 347 (515)
T TIGR03140 275 EHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR-KLGVPGEKEYIGKGVAYCPHCD------G 347 (515)
T ss_pred HHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC-CCCCCCHHHcCCCeEEEeeccC------h
Confidence 66777899999988999998765 4677778888999999999999986 45556632 23444432211 1
Q ss_pred hhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEc
Q 012165 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL 269 (469)
Q Consensus 203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~ 269 (469)
....+++++|||+|++|+|+|..|++++.+|+ .+.+.+++ .||++++++.+++++.+ ++.+..|.+
T Consensus 348 ~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~ 426 (515)
T TIGR03140 348 PFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRY 426 (515)
T ss_pred hhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEE
Confidence 23468999999999999999999999999887 22445555 69999999999999743 456656766
Q ss_pred CCC-----CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHH
Q 012165 270 EDG-----STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 343 (469)
Q Consensus 270 ~~g-----~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~ 343 (469)
.++ +++++|.|++++|.+||+++++.. ++.+ +|+|.||+++||++|+|||+|||+..+... +..
T Consensus 427 ~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~---------~~~ 496 (515)
T TIGR03140 427 QDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQ---------III 496 (515)
T ss_pred EECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccce---------EEE
Confidence 542 469999999999999999998776 6654 578999999999999999999999865421 112
Q ss_pred HHHHHHHHHHHHh
Q 012165 344 ARQSAQHCIKALL 356 (469)
Q Consensus 344 A~~~a~~~a~~i~ 356 (469)
|+.+|..+|.++.
T Consensus 497 A~~~G~~Aa~~i~ 509 (515)
T TIGR03140 497 AMGEGAKAALSAF 509 (515)
T ss_pred EEccHHHHHHHHH
Confidence 5556666665554
No 64
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.1e-32 Score=247.15 Aligned_cols=357 Identities=22% Similarity=0.292 Sum_probs=239.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCCcccccCCC-------------CCCCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPALTKGYLFPL-------------DKKPARLP 112 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l~~~~~~~~-------------~~~~~~~~ 112 (469)
...+|++|||||..|+++|+..+++|. ++.|+|..-..+.. +-..++..++.. .......+
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GA---kv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~ 94 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGA---KVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG 94 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCc---eEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence 347999999999999999999999986 79999876322110 111111111000 00000111
Q ss_pred CCccccC----CCCCCCC----HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCCCCC
Q 012165 113 GFHTCVG----SGGERQT----PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 182 (469)
Q Consensus 113 ~~~~~~~----~~~~~~~----~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~g 182 (469)
.|..... .....++ ...+.+.+++++.| +..-+++..-+|...++. .+++.+++||||++|. +|.+||
T Consensus 95 ~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIpG 172 (478)
T KOG0405|consen 95 SFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIPG 172 (478)
T ss_pred CCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCCc
Confidence 1110000 0000011 11223447788876 666677777788888885 3788999999999997 677766
Q ss_pred CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG 244 (469)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g 244 (469)
..+. .|++.+.+....+++++|+|+|++++|+|..++.+|.++. .+.+.++..|
T Consensus 173 ~E~g--------idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~g 244 (478)
T KOG0405|consen 173 AELG--------IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRG 244 (478)
T ss_pred hhhc--------cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcc
Confidence 5321 1344555555689999999999999999999999999887 4567788999
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165 245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI 321 (469)
Q Consensus 245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~ 321 (469)
|++|.++.++++.+..++.. .+..+.|+...+|.++||+|+.||+.- |++.|++.+ .|.|.||++.+||+|+||++
T Consensus 245 invh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~av 323 (478)
T KOG0405|consen 245 INVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAV 323 (478)
T ss_pred eeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEe
Confidence 99999999999998766654 345566666679999999999999864 788899887 67799999999999999999
Q ss_pred ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCCc----
Q 012165 322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---- 394 (469)
Q Consensus 322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---- 394 (469)
||++.- +..-+.|..+|+.++..+.++.. ..|..+| +.+|.++. +-.+|.++.+
T Consensus 324 GDv~gk----------~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp---~vVFshP~------igtVGLtE~EAiek 384 (478)
T KOG0405|consen 324 GDVTGK----------INLTPVAIAAGRKLANRLFGGGKDTKLDYENVP---CVVFSHPP------IGTVGLTEEEAIEK 384 (478)
T ss_pred ccccCc----------EecchHHHhhhhhHHHHhhcCCCCCccccccCc---eEEEecCC------cccccCCHHHHHHH
Confidence 999974 23445599999999999997432 3567777 46676654 2234443321
Q ss_pred -----E-EEEccC-----------CCcEEEEEE--eCCEEEEEEeecCChHHhHHH-HHHHhCC
Q 012165 395 -----T-IEIGNF-----------DPKIATFWI--DSGKLKGVLVESGSPEEFQLL-PTLARSQ 438 (469)
Q Consensus 395 -----~-~~~~~~-----------~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~-~~~~~~~ 438 (469)
+ +....| +..+.++.. ++++++|+++++.++.++.+- .-.++.+
T Consensus 385 yg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmG 448 (478)
T KOG0405|consen 385 YGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMG 448 (478)
T ss_pred hCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecC
Confidence 1 111111 122344444 579999999987777665442 3334444
No 65
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=5.6e-32 Score=263.21 Aligned_cols=257 Identities=21% Similarity=0.291 Sum_probs=177.8
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 127 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (469)
...+||+||||||||++||..|+++|+ +++++|.....+... ... ...++|+... ..+.....+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~---~~~~ie~~~~gg~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~ 70 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQLT-TTT---------EVENWPGDPNDLTGPLLMERMH 70 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCC---CeEEEEeecCCCcee-cCc---------eECCCCCCCCCCCHHHHHHHHH
Confidence 456899999999999999999999987 688988543211110 000 0111111100 00000012234
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCcEEEeC-CCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHHh
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS 203 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~-~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~ 203 (469)
+....++++++.+ +|..++...+.+++. +...+.||+||||||+.|+ .|++||.+ ..++++.... ...
T Consensus 71 ~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~-~~~i~g~~~~~~~~v~~~~~~------~~~ 142 (321)
T PRK10262 71 EHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACATC------DGF 142 (321)
T ss_pred HHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC-CCCCCCHHHcCCCcEEEeecC------CHH
Confidence 4455667777774 677888766654332 2336899999999999986 45566632 2334433221 122
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHhCCCeEe----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 012165 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 267 (469)
Q Consensus 204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v 267 (469)
...+++++|||+|.+|+|+|..|++++.+++ .+.+.+++.||++++++.+++++.+ ++.+..+
T Consensus 143 ~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v 221 (321)
T PRK10262 143 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGV 221 (321)
T ss_pred HcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEE
Confidence 3468999999999999999999999999887 2344566889999999999999853 3344456
Q ss_pred EcCCC------CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCC-----CCCCCCCceEEeccccccC
Q 012165 268 KLEDG------STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFP 328 (469)
Q Consensus 268 ~~~~g------~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~-----~~~t~~~~Vfa~GD~a~~~ 328 (469)
++.++ +++++|.||+++|.+||..+++. ++..++|+|.||+ +++|++|+|||+|||+..+
T Consensus 222 ~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~ 292 (321)
T PRK10262 222 RLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI 292 (321)
T ss_pred EEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCC
Confidence 65432 47999999999999999887654 5666678899997 7899999999999999754
No 66
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1e-31 Score=276.74 Aligned_cols=276 Identities=22% Similarity=0.315 Sum_probs=195.7
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (469)
...+||+||||||||++||.+|++.|+ +++|+++.. +... . ... ...+++.+....+........+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~---~v~li~~~~--GG~~-~--~~~------~~~~~~~~~~~~~~~l~~~l~~ 274 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGI---RTGIVAERF--GGQV-L--DTM------GIENFISVPETEGPKLAAALEE 274 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCC--CCee-e--ccC------cccccCCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999988 799997641 1110 0 000 0011111111111111233456
Q ss_pred HHHHCCcEEEeCCcEEEEeCC--CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHHh
Q 012165 129 WYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS 203 (469)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~--~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~ 203 (469)
.+++++++++.+++|.+++.. ...|.+.++.++.||+||+|||++++ .+.+||.. ..++++.... + ..
T Consensus 275 ~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r-~~~ipG~~~~~~~~v~~~~~~---~---~~ 347 (517)
T PRK15317 275 HVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR-NMNVPGEDEYRNKGVAYCPHC---D---GP 347 (517)
T ss_pred HHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC-CCCCCCHHHhcCceEEEeecc---C---ch
Confidence 677889999998899999886 34677788888999999999999986 45556532 2344443211 1 12
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE 270 (469)
Q Consensus 204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~ 270 (469)
..++++++|||+|++|+|+|..|+..+.+|+ .+.+.+.+ .||++++++.+.++..+ ++.+..+.+.
T Consensus 348 ~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~ 426 (517)
T PRK15317 348 LFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYK 426 (517)
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEE
Confidence 3468999999999999999999999999887 12344544 69999999999999853 4566666664
Q ss_pred C---C--CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHH
Q 012165 271 D---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 344 (469)
Q Consensus 271 ~---g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A 344 (469)
+ | +++++|.+++++|.+||+++++.. +..+ +|+|.||+++||++|+|||+|||+..+... +..|
T Consensus 427 ~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~---------~~~A 496 (517)
T PRK15317 427 DRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYKQ---------IIIA 496 (517)
T ss_pred ECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCCE---------EEEh
Confidence 3 3 359999999999999999998776 6554 578999999999999999999999865421 1225
Q ss_pred HHHHHHHHHHHh
Q 012165 345 RQSAQHCIKALL 356 (469)
Q Consensus 345 ~~~a~~~a~~i~ 356 (469)
+.+|..||.++.
T Consensus 497 ~~eG~~Aa~~~~ 508 (517)
T PRK15317 497 MGEGAKAALSAF 508 (517)
T ss_pred hhhHHHHHHHHH
Confidence 555555555543
No 67
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-32 Score=256.90 Aligned_cols=254 Identities=27% Similarity=0.367 Sum_probs=197.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCc-EEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 127 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~-V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (469)
+++||+|||||||||+||.++.+.+. + ++|+|+...-. ++.... ...++|++.. ..+..+..+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l---~~~li~~~~~~gg---------~~~~~~-~venypg~~~~~~g~~L~~~~~ 68 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGL---KVVLILEGGEPGG---------QLTKTT-DVENYPGFPGGILGPELMEQMK 68 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCC---CcEEEEecCCcCC---------ccccce-eecCCCCCccCCchHHHHHHHH
Confidence 56899999999999999999999986 5 56666543221 111111 4556666654 44555555666
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHH
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~ 202 (469)
++....++++.. ..|..++... +.|.+++++ +++++||||||..++. |.+++.. ..+++++.. ++.
T Consensus 69 ~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---cdg--- 139 (305)
T COG0492 69 EQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---CDG--- 139 (305)
T ss_pred HHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---cCc---
Confidence 677778999888 6888998874 688888888 9999999999999874 4444422 246777643 222
Q ss_pred hhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEc
Q 012165 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKL 269 (469)
Q Consensus 203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~ 269 (469)
+..+++++|||||.+++|-|.+|.+++.+|+ .+.+.+++. +|++++++.+.++..+ + +.+|++
T Consensus 140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~--~-v~~v~l 215 (305)
T COG0492 140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGD--D-VEGVVL 215 (305)
T ss_pred -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecC--c-cceEEE
Confidence 3578899999999999999999999999888 345556655 8999999999999843 3 667777
Q ss_pred CCC----CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCC
Q 012165 270 EDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 329 (469)
Q Consensus 270 ~~g----~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~ 329 (469)
++. +++++|-+++++|..|++++++..++..+.|.|.||+.++||+|+|||+||++..+.
T Consensus 216 ~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~ 279 (305)
T COG0492 216 KNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG 279 (305)
T ss_pred EecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc
Confidence 764 278999999999999999999988875557899999999999999999999998764
No 68
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=4.2e-31 Score=273.85 Aligned_cols=272 Identities=21% Similarity=0.295 Sum_probs=187.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..+||+||||||||++||.+|++.|+ +|+|+|++...+.. . ... ....+|++....+........+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~---~V~liE~~~~GG~~-~-~~~--------~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKL---DTLIIEKDDFGGQI-T-ITS--------EVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCceE-E-ecc--------ccccCCCCcCCCHHHHHHHHHHH
Confidence 35899999999999999999999987 79999986532110 0 000 00111211111111111223445
Q ss_pred HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHHhh
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL 204 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~ 204 (469)
+++.+++++ .++|+.++.++. .|.+.++ .+.|++||||||++|+. |.++|.+ ..+++++..... ..
T Consensus 70 ~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~~~------~~ 140 (555)
T TIGR03143 70 AQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATCDG------EF 140 (555)
T ss_pred HHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeecCh------hh
Confidence 667899986 468999987653 5666555 48999999999999874 5566642 244554432211 23
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---
Q 012165 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK--- 268 (469)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~--- 268 (469)
..+++++|||+|++|+|+|..|.+++.+|+ ...+.++..||++++++.|+++.. ++.+..+.
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~ 218 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATG--DDGLRYAKFVN 218 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEE
Confidence 468999999999999999999999999988 112233456999999999999973 33333333
Q ss_pred cCCCCEE----eCCE----EEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccc
Q 012165 269 LEDGSTI----DADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 339 (469)
Q Consensus 269 ~~~g~~i----~~D~----vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~ 339 (469)
..+|+.. ++|. |++++|++|++.+++. ++..+ +|+|.||++++|++|+|||+|||+.... .
T Consensus 219 ~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~ 288 (555)
T TIGR03143 219 NVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---------R 288 (555)
T ss_pred CCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc---------c
Confidence 3456532 3676 9999999999998775 46555 5789999999999999999999975321 1
Q ss_pred hHHHHHHHHHHHHHHH
Q 012165 340 HVDHARQSAQHCIKAL 355 (469)
Q Consensus 340 ~~~~A~~~a~~~a~~i 355 (469)
.+..|..+|+.+|.+|
T Consensus 289 ~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 289 QVVTAVADGAIAATSA 304 (555)
T ss_pred hheeHHhhHHHHHHHH
Confidence 2345777777777776
No 69
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=256.17 Aligned_cols=305 Identities=29% Similarity=0.344 Sum_probs=246.4
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHC
Q 012165 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133 (469)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (469)
++|||+|++|+++|..|++... +.+|+++..++..+|.+++++..+..... ....+. .... +..+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~-~~~~~ 66 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLL-AAEITLIGREPKYSYYRCPLSLYVGGGIA-SLEDLR-----------YPPR-FNRAT 66 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCC-CCCEEEEeCCCCCCCCCCccchHHhcccC-CHHHhc-----------ccch-hHHhh
Confidence 5899999999999999999875 78999999999988988888764433221 111110 1112 33577
Q ss_pred CcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEE
Q 012165 134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (469)
Q Consensus 134 ~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVv 213 (469)
++++..+++|..+|+..+.+.+.++ ++.||+|++|||+++...| +...+++++++...+.+.+.......++++|+
T Consensus 67 ~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv 142 (415)
T COG0446 67 GIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVV 142 (415)
T ss_pred CCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEE
Confidence 9999999999999999999999999 7999999999999998544 45577899999999998887776667999999
Q ss_pred cCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE-EEcCCCC
Q 012165 214 GGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGS 273 (469)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~-v~~~~g~ 273 (469)
|+|++|+|+|..+.++|.+++ .+.+.+++.||+++++..+.+++...+..... +...++.
T Consensus 143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 222 (415)
T COG0446 143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE 222 (415)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc
Confidence 999999999999999999987 34677889999999999999998543222211 5778888
Q ss_pred EEeCCEEEEccCCccCCchhhhcC--CcccCCCEEeCCCCCCC-CCceEEeccccccCCccCCcccccchHHHHHHHHHH
Q 012165 274 TIDADTIVIGIGAKPTVSPFERVG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 350 (469)
Q Consensus 274 ~i~~D~vi~a~G~~p~~~~~~~~g--l~~~~g~i~Vd~~~~t~-~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~ 350 (469)
.+++|++++++|.+||..+....+ +....|+|.||++++|+ .++|||+|||+..+....+......+++.+..+++.
T Consensus 223 ~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i 302 (415)
T COG0446 223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRI 302 (415)
T ss_pred EEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHH
Confidence 999999999999999977777765 45556789999999997 999999999999876544444557789999999999
Q ss_pred HHHHHhcCCCCCCCCCCceeeeccccc
Q 012165 351 CIKALLSAQTHTYDYLPYFYSRVFEYE 377 (469)
Q Consensus 351 ~a~~i~~~~~~~~~~~p~~~~~~~~~~ 377 (469)
++.++.+. .......+++|.+++.+.
T Consensus 303 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 328 (415)
T COG0446 303 AAENIAGA-LRIPGLLGTVISDVGDLC 328 (415)
T ss_pred HHHHhccc-cccccccCceEEEEcCeE
Confidence 99999865 333456788888887753
No 70
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=1.2e-29 Score=249.53 Aligned_cols=274 Identities=25% Similarity=0.287 Sum_probs=189.3
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (469)
...++|+|||+|++|+++|..|++.|+ +|+++|+.+.+... +... .+.. .++. .......+
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~---~~~~--~~~~----~~~~-------~~~~~~~~ 76 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGY---EVHVYDKLPEPGGL---MLFG--IPEF----RIPI-------ERVREGVK 76 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCce---eeec--Cccc----ccCH-------HHHHHHHH
Confidence 345799999999999999999999987 79999988764211 0000 0000 0000 00012234
Q ss_pred HHHHCCcEEEeCCcEEEEeC----CC-----cEEEeCCCeEEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHHH
Q 012165 129 WYKEKGIEMIYQDPVTSIDI----EK-----QTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADAD 198 (469)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~----~~-----~~v~~~~g~~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~ 198 (469)
.+.+.+++++.++.+..++. .. ..+..+ +..+.||+||||||+. ++ .|.++|.+.+++++.. ....
T Consensus 77 ~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~-~~~ipg~~~~~v~~~~--~~~~ 152 (352)
T PRK12770 77 ELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR-KLGIPGEDLPGVYSAL--EYLF 152 (352)
T ss_pred HHHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC-cCCCCCccccCceeHH--HHHH
Confidence 45667999998877655432 01 111111 2237899999999995 54 5667776667766532 1112
Q ss_pred HHHHh-----------hhcCCeEEEEcCChHHHHHHHHHHhCCCe-Ee--------------eeHHHHHHcCcEEEcCCe
Q 012165 199 ALISS-----------LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TT--------------RYEQLYQQNGVKFVKGAS 252 (469)
Q Consensus 199 ~~~~~-----------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-v~--------------~~~~~l~~~gV~~~~~~~ 252 (469)
.+... ...+++++|||+|++|+|+|..|..+|.+ ++ ...+.++++||+++++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~ 232 (352)
T PRK12770 153 RIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVT 232 (352)
T ss_pred HhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccC
Confidence 21110 11268999999999999999999988887 66 224567889999999999
Q ss_pred EEEEEeCCCCcEEEEEc--------------------CCCCEEeCCEEEEccCCccCCchhhh-cCCccc-CCCEEeCCC
Q 012165 253 IKNLEAGSDGRVAAVKL--------------------EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ 310 (469)
Q Consensus 253 v~~i~~~~~~~v~~v~~--------------------~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~Vd~~ 310 (469)
+.+++.. +.+..+++ .+++.+++|.+|+++|++|++.+..+ +++..+ +|++.||++
T Consensus 233 v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~ 310 (352)
T PRK12770 233 PVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK 310 (352)
T ss_pred ceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC
Confidence 9998742 33433432 12357999999999999999887766 777765 467999999
Q ss_pred CCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165 311 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 311 ~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
++|+.|+|||+|||+..+. .+..|+.+|+.+|.+|..
T Consensus 311 ~~t~~~~vyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 311 HMTSREGVFAAGDVVTGPS----------KIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred cccCCCCEEEEcccccCcc----------hHHHHHHHHHHHHHHHHH
Confidence 9999999999999997543 355688899998888753
No 71
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.96 E-value=9.1e-28 Score=225.82 Aligned_cols=278 Identities=21% Similarity=0.305 Sum_probs=195.5
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC
Q 012165 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (469)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (469)
...++++|||+|+|.+|.+++..|-...+ +|++|++.+++.|. |.|+......-+ +... .+..
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~vGTve-----~rSI--------vEPI 113 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTVGTVE-----LRSI--------VEPI 113 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCcccccee-----ehhh--------hhhH
Confidence 34567899999999999999998877655 89999999998876 555432221110 0000 0111
Q ss_pred HhHHHHC--CcEEEeCCcEEEEeCCCcEEEeC----CC----eEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHH
Q 012165 127 PEWYKEK--GIEMIYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 196 (469)
Q Consensus 127 ~~~~~~~--~i~~~~~~~v~~id~~~~~v~~~----~g----~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~ 196 (469)
....+.. ++.++. .+.+.+|++++.|++. ++ -.+.|||||+|+|+.+.. ..+||- .++.+.++..+|
T Consensus 114 r~i~r~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T-FgipGV-~e~~~FLKEv~d 190 (491)
T KOG2495|consen 114 RAIARKKNGEVKYLE-AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT-FGIPGV-EENAHFLKEVED 190 (491)
T ss_pred HHHhhccCCCceEEe-cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC-CCCCch-hhchhhhhhhhH
Confidence 2223322 455555 6889999999987653 34 368999999999999874 444443 233456777888
Q ss_pred HHHHHHhhh-----------------cCCeEEEEcCChHHHHHHHHHHhCC--------------CeEe-----------
Q 012165 197 ADALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGWK--------------LDTT----------- 234 (469)
Q Consensus 197 ~~~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~v~----------- 234 (469)
+++++..+- +--+++|||||++|+|+|.+|+..- .+++
T Consensus 191 AqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m 270 (491)
T KOG2495|consen 191 AQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM 270 (491)
T ss_pred HHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH
Confidence 887754321 1137999999999999999987541 2222
Q ss_pred -------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhcCCccc---C
Q 012165 235 -------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSS---V 302 (469)
Q Consensus 235 -------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~---~ 302 (469)
..++.+.+.||++.+++.|..++. ..+ .+...|| ++|++-+++|++|..|. ++.+.+....+ +
T Consensus 271 Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~---~~I-~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~r 345 (491)
T KOG2495|consen 271 FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE---KTI-HAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGR 345 (491)
T ss_pred HHHHHHHHHHHHhhhccceeecccEEEeecC---cEE-EEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCc
Confidence 456778889999999999999873 222 3444455 57999999999999886 44444333222 3
Q ss_pred CCEEeCCCCCC-CCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165 303 GGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 303 g~i~Vd~~~~t-~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
.++.||++||. +.+||||+|||+..+.. .+..+.|.+||.++|+++-
T Consensus 346 r~L~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 346 RGLAVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred eeeeeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence 47999999998 88999999999954332 2256679999999999873
No 72
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.95 E-value=2.5e-27 Score=248.49 Aligned_cols=270 Identities=13% Similarity=0.096 Sum_probs=172.5
Q ss_pred cccccccccccc-cccccCCCCcccccc-cCCccccccccccc-----------------c-------cccCCCCCCcEE
Q 012165 2 ASVSNSLSFKHG-LSLWCPQSPSLHRIR-HSSAKNFQRRGFVV-----------------A-------YSSFANENREFV 55 (469)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------------~-------~~~~~~~~~~vv 55 (469)
..++||||.+|| |+|+ +|+.+|.|.. .+|++..++|++.+ + ..+.....++|+
T Consensus 309 i~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVa 387 (1028)
T PRK06567 309 IVIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNIL 387 (1028)
T ss_pred HHHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEE
Confidence 468999999999 9999 7999999987 79999999985432 1 012235678999
Q ss_pred EEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC--C---------CCCcccccC-CCCCCCCCCCCCccccCCC
Q 012165 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YE--R---------PALTKGYLF-PLDKKPARLPGFHTCVGSG 121 (469)
Q Consensus 56 IIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~--~---------~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 121 (469)
||||||||++||.+|++.|+ +||++|+.+..+ |. . +.+...... ........++
T Consensus 388 VVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp--------- 455 (1028)
T PRK06567 388 VTGLGPAGFSLSYYLLRSGH---NVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT--------- 455 (1028)
T ss_pred EECcCHHHHHHHHHHHhCCC---eEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc---------
Confidence 99999999999999999998 799999865321 11 0 111111100 0011111111
Q ss_pred CCCCCHhH------HHHC--CcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCC-CCCcCCCCCCCCcCcEEEec
Q 012165 122 GERQTPEW------YKEK--GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIR 192 (469)
Q Consensus 122 ~~~~~~~~------~~~~--~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~-~~~~~~~~~g~~~~~v~~~~ 192 (469)
.+...+. ..+. ++.++.|.+ . +..++.++-....||+|+||||+ .|+ .+.++|.+.++++...
T Consensus 456 -~R~~k~~l~~i~~il~~g~~v~~~~gv~-l-----G~dit~edl~~~gyDAV~IATGA~kpr-~L~IPGeda~GV~sA~ 527 (1028)
T PRK06567 456 -VRWDKNNLDILRLILERNNNFKYYDGVA-L-----DFNITKEQAFDLGFDHIAFCIGAGQPK-VLDIENFEAKGVKTAS 527 (1028)
T ss_pred -ccchHHHHHHHHHHHhcCCceEEECCeE-E-----CccCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCccCCCeEEHH
Confidence 0111111 1222 355555533 2 12222222223579999999999 576 5667888778887654
Q ss_pred CHHHHHHHHHh--------hhcCCeEEEEcCChHHHHHHHHHHh------------------------------------
Q 012165 193 DVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG------------------------------------ 228 (469)
Q Consensus 193 ~~~~~~~~~~~--------~~~~~~vvVvG~G~~g~e~A~~l~~------------------------------------ 228 (469)
++......... ...+++|+|||||.+|+|+|.....
T Consensus 528 DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~ 607 (1028)
T PRK06567 528 DFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLF 607 (1028)
T ss_pred HHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhh
Confidence 43222111100 1236899999999999999984432
Q ss_pred ---------------CCCeEe-----------ee----H--HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC------
Q 012165 229 ---------------WKLDTT-----------RY----E--QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------ 270 (469)
Q Consensus 229 ---------------~g~~v~-----------~~----~--~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~------ 270 (469)
.|. |+ .+ + +...+.||+++.+..+.++..+++|.+.++++.
T Consensus 608 g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~~eEv~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~ 686 (1028)
T PRK06567 608 KEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLNHEELIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHC 686 (1028)
T ss_pred cchhccchhhhhhccCCc-eEEEecCChhhCCCCCCCHHHHHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEeccc
Confidence 121 33 11 1 123578999999999999986666777665442
Q ss_pred --------C----------------CCEEeCCEEEEccCCccCCchh
Q 012165 271 --------D----------------GSTIDADTIVIGIGAKPTVSPF 293 (469)
Q Consensus 271 --------~----------------g~~i~~D~vi~a~G~~p~~~~~ 293 (469)
+ ..+++||.||+|+|..||+.+.
T Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~ 733 (1028)
T PRK06567 687 EQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD 733 (1028)
T ss_pred ccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc
Confidence 1 1468999999999999998763
No 73
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=1.3e-26 Score=232.71 Aligned_cols=260 Identities=19% Similarity=0.259 Sum_probs=170.9
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (469)
....++|+||||||||++||..|+++.. ..+|+|+|+.+.+. - +......+.......+ .....
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~pg-G---lvr~gvaP~~~~~k~v-----------~~~~~ 86 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTPF-G---LVRSGVAPDHPETKNV-----------TNQFS 86 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCCc-c---eEeeccCCCcchhHHH-----------HHHHH
Confidence 3456799999999999999999997321 34899999998642 1 1110111111110000 11233
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHH-------HHHH
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADAL 200 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~ 200 (469)
.++.+.+++++.+..+ ++.+++++-. ..||+||||||+.+.+.+.+||.+.++++...++.. ...+
T Consensus 87 ~~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~ 159 (491)
T PLN02852 87 RVATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHL 159 (491)
T ss_pred HHHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence 4566778998876443 2334444433 479999999999864456678988899987654421 1111
Q ss_pred HHhhhcCCeEEEEcCChHHHHHHHHHHhC--------------------CCe-Ee---------------eeHH------
Q 012165 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KLD-TT---------------RYEQ------ 238 (469)
Q Consensus 201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g~~-v~---------------~~~~------ 238 (469)
...+..+++++|||+|++|+++|..|.+. +.+ |+ .+.+
T Consensus 160 ~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~ 239 (491)
T PLN02852 160 PPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKN 239 (491)
T ss_pred hhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCC
Confidence 11234689999999999999999998775 332 33 1111
Q ss_pred -----------------------------------HHHH---------cCcEEEcCCeEEEEEeC--CCCcEEEEEcC--
Q 012165 239 -----------------------------------LYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE-- 270 (469)
Q Consensus 239 -----------------------------------~l~~---------~gV~~~~~~~v~~i~~~--~~~~v~~v~~~-- 270 (469)
...+ ++|.|++...+.+|..+ +++++.++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~ 319 (491)
T PLN02852 240 VRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERT 319 (491)
T ss_pred CceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEe
Confidence 1112 57999999889999742 23567666553
Q ss_pred ---------------CC--CEEeCCEEEEccCCc--cCCch-h-hhcCCccc-CCCEEeCCCCCCCCCceEEeccccccC
Q 012165 271 ---------------DG--STIDADTIVIGIGAK--PTVSP-F-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP 328 (469)
Q Consensus 271 ---------------~g--~~i~~D~vi~a~G~~--p~~~~-~-~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~ 328 (469)
+| +.++||.||.++|++ |...+ + ...++..+ +|.|.+|+.++|+.|+|||+|||...|
T Consensus 320 ~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp 399 (491)
T PLN02852 320 VLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGP 399 (491)
T ss_pred ecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCC
Confidence 23 258999999999998 55443 2 23344433 688999988889999999999999876
Q ss_pred Cc
Q 012165 329 LK 330 (469)
Q Consensus 329 ~~ 330 (469)
..
T Consensus 400 ~g 401 (491)
T PLN02852 400 TG 401 (491)
T ss_pred CC
Confidence 54
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.95 E-value=7.7e-26 Score=248.10 Aligned_cols=271 Identities=15% Similarity=0.141 Sum_probs=187.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..+||+|||||||||+||.+|++.|. +|+|+|+++...... ... . ..+++.. ...+.....+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~---~V~liD~~~~~GG~~-------~~~-~---~~~~g~~---~~~~~~~~~~~ 224 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGA---RVILVDEQPEAGGSL-------LSE-A---ETIDGKP---AADWAAATVAE 224 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCCCCCee-------ecc-c---cccCCcc---HHHHHHHHHHH
Confidence 35799999999999999999999987 799999987653210 000 0 0011000 00000122233
Q ss_pred HHHC-CcEEEeCCcEEEEeCCCcEEEeC----------C----C--eEEEeccEEeccCCCCCcCCCCCCCCcCcEEEec
Q 012165 130 YKEK-GIEMIYQDPVTSIDIEKQTLITN----------S----G--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR 192 (469)
Q Consensus 130 ~~~~-~i~~~~~~~v~~id~~~~~v~~~----------~----g--~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~ 192 (469)
++.. +++++.+++|.+++......... + + .++.||+||||||+.++ +++++|.+.+++++..
T Consensus 225 l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r-~~pipG~~~pgV~~~~ 303 (985)
T TIGR01372 225 LTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER-PLVFANNDRPGVMLAG 303 (985)
T ss_pred HhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc-CCCCCCCCCCCcEEch
Confidence 4444 59999988898886543211110 0 1 25899999999999987 5567888889998764
Q ss_pred CHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------eeHHHHHHcCcEEEcCCeEEEEEeCCC
Q 012165 193 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------RYEQLYQQNGVKFVKGASIKNLEAGSD 261 (469)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------~~~~~l~~~gV~~~~~~~v~~i~~~~~ 261 (469)
....... ......+++++|+|+|++++|+|..|.+.|.++. .+.+.+++.||++++++.+.++.. +
T Consensus 304 ~~~~~l~-~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g--~ 380 (985)
T TIGR01372 304 AARTYLN-RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVSPEARAEARELGIEVLTGHVVAATEG--G 380 (985)
T ss_pred HHHHHHH-hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchhHHHHHHHHHcCCEEEcCCeEEEEec--C
Confidence 4332211 1112367999999999999999999999996543 345668899999999999999973 3
Q ss_pred CcEEEEEcC----CCCEEeCCEEEEccCCccCCchhhhcCCccc--C--CCEEeCCCCCCCCCceEEeccccccCCccCC
Q 012165 262 GRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--V--GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 333 (469)
Q Consensus 262 ~~v~~v~~~----~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~--g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~ 333 (469)
+.+..|++. ++++++||.|+++.|++||++++..++.... . +... -.|+.|+||++||++...
T Consensus 381 ~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~~g~~----- 451 (985)
T TIGR01372 381 KRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFL----PGDAVQGCILAGAANGLF----- 451 (985)
T ss_pred CcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCcee----cCCCCCCeEEeeccCCcc-----
Confidence 445555554 4568999999999999999999888776532 1 1111 136789999999999643
Q ss_pred cccccchHHHHHHHHHHHHHHHh
Q 012165 334 RTARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 334 ~~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
....|..+|+.+|..++
T Consensus 452 ------~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 452 ------GLAAALADGAAAGAAAA 468 (985)
T ss_pred ------CHHHHHHHHHHHHHHHH
Confidence 33457778888877764
No 75
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=230.74 Aligned_cols=318 Identities=23% Similarity=0.218 Sum_probs=224.2
Q ss_pred ccccccccccccccccC--CCCcccccc--cCCcccccccccccc---------cccCCCCCCcEEEEcCcHHHHHHHHH
Q 012165 3 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAART 69 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~vvIIGgG~AGl~aA~~ 69 (469)
..+|+||.+|||+|+.+ |+..|.+.. .++++..+.+.+.+. .++.....++|.|||+|||||++|..
T Consensus 62 ~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~ 141 (457)
T COG0493 62 HKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADD 141 (457)
T ss_pred HHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHH
Confidence 46899999999999988 999999974 888998888776652 12234456899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (469)
Q Consensus 70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~ 149 (469)
|.+.|+ .||++|+.+..... .. |-.+..+...++ ..+..+.+++.|++|+.++++-
T Consensus 142 L~~~G~---~Vtv~e~~~~~GGl----l~-yGIP~~kl~k~i-----------~d~~i~~l~~~Gv~~~~~~~vG----- 197 (457)
T COG0493 142 LSRAGH---DVTVFERVALDGGL----LL-YGIPDFKLPKDI-----------LDRRLELLERSGVEFKLNVRVG----- 197 (457)
T ss_pred HHhCCC---eEEEeCCcCCCcee----EE-ecCchhhccchH-----------HHHHHHHHHHcCeEEEEcceEC-----
Confidence 999998 79999988765311 00 111111111111 2355678889999999986652
Q ss_pred CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhh---------hcCCeEEEEcCChHHH
Q 012165 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGYIGM 220 (469)
Q Consensus 150 ~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~---------~~~~~vvVvG~G~~g~ 220 (469)
+.++++.- .-+||++++|||+.-.+.-.++|.+.++++...++.......... ..+++++|||+|.+++
T Consensus 198 -~~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~ 275 (457)
T COG0493 198 -RDITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAM 275 (457)
T ss_pred -CcCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHH
Confidence 22222211 136799999999764445567787788876554333222111111 1238999999999999
Q ss_pred HHHHHHHhCCCe-Ee--------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC--------
Q 012165 221 EVAAAAVGWKLD-TT--------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-------- 271 (469)
Q Consensus 221 e~A~~l~~~g~~-v~--------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~-------- 271 (469)
+++....++|.+ ++ ...+...+.|+...+.....++..+++|++..+.+..
T Consensus 276 D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~ 355 (457)
T COG0493 276 DCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVD 355 (457)
T ss_pred HHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCccc
Confidence 999998888873 33 2345566788999998888898877788877654311
Q ss_pred -----------C--CEEeCCEEEEccCCccCCchh--hhcCCccc-CCCEEeCCCC-CCCCCceEEeccccccCCccCCc
Q 012165 272 -----------G--STIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQF-RTRMPGIFAIGDVAAFPLKMYDR 334 (469)
Q Consensus 272 -----------g--~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~Vd~~~-~t~~~~Vfa~GD~a~~~~~~~~~ 334 (469)
| ..+++|.|+.++|+.++.... ...++..+ +|.+.+|+.+ +|+.|++||.||+.....
T Consensus 356 ~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~----- 430 (457)
T COG0493 356 GWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAA----- 430 (457)
T ss_pred ccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchh-----
Confidence 2 257899999999998874431 22245544 5889999987 999999999999998532
Q ss_pred ccccchHHHHHHHHHHHHHHHh
Q 012165 335 TARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 335 ~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
.+..|+.+|+.+|+.|.
T Consensus 431 -----~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 431 -----LVVWAIAEGREAAKAID 447 (457)
T ss_pred -----hhhhHHhhchHHHHhhh
Confidence 33457788888877664
No 76
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=236.37 Aligned_cols=299 Identities=18% Similarity=0.259 Sum_probs=195.3
Q ss_pred cccccccccccccccCCCCcccccc--cCCccccccccccc---------ccccCCCCCCcEEEEcCcHHHHHHHHHHHH
Q 012165 4 VSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVV---------AYSSFANENREFVIVGGGNAAGYAARTFVE 72 (469)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~ 72 (469)
++|.||..+||+||+||+.+|.... .++.+.++++.+.+ ..+|.....++|.|||+|||||+||-.|-+
T Consensus 1727 ~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk 1806 (2142)
T KOG0399|consen 1727 ETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNK 1806 (2142)
T ss_pred hhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhh
Confidence 6899999999999999999998866 77777777765443 334556678999999999999999999999
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcE
Q 012165 73 HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT 152 (469)
Q Consensus 73 ~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~ 152 (469)
.|+ .|+|.|+.+..+.- +.++ .....+..+ ..++..+.+.+.||+|+.++++ ++.
T Consensus 1807 ~gh---~v~vyer~dr~ggl-------l~yg--ipnmkldk~-------vv~rrv~ll~~egi~f~tn~ei------gk~ 1861 (2142)
T KOG0399|consen 1807 AGH---TVTVYERSDRVGGL-------LMYG--IPNMKLDKF-------VVQRRVDLLEQEGIRFVTNTEI------GKH 1861 (2142)
T ss_pred cCc---EEEEEEecCCcCce-------eeec--CCccchhHH-------HHHHHHHHHHhhCceEEeeccc------ccc
Confidence 998 79999988765311 1111 111111100 0234457788899999998765 233
Q ss_pred EEeCCCeEEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHHH--HHHH-------hhhcCCeEEEEcCChHHHHH
Q 012165 153 LITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADAD--ALIS-------SLEKAKKVVVVGGGYIGMEV 222 (469)
Q Consensus 153 v~~~~g~~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~-------~~~~~~~vvVvG~G~~g~e~ 222 (469)
+.+ |+-.-++|.+|+|+|+. |+.+ +++|.++.|+++.-.+.... .+.. ...++|+|+|||||.+|-++
T Consensus 1862 vs~-d~l~~~~daiv~a~gst~prdl-pv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dc 1939 (2142)
T KOG0399|consen 1862 VSL-DELKKENDAIVLATGSTTPRDL-PVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDC 1939 (2142)
T ss_pred ccH-HHHhhccCeEEEEeCCCCCcCC-CCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccc
Confidence 333 22234789999999986 5444 46888888886543322211 1111 01367999999999999999
Q ss_pred HHHHHhCCCeEe--------------------------e----eHHHHHHcCcEEEcCC-eEEEEEeCCCCcEEEE----
Q 012165 223 AAAAVGWKLDTT--------------------------R----YEQLYQQNGVKFVKGA-SIKNLEAGSDGRVAAV---- 267 (469)
Q Consensus 223 A~~l~~~g~~v~--------------------------~----~~~~l~~~gV~~~~~~-~v~~i~~~~~~~v~~v---- 267 (469)
...-.++|++.. + -.+.-+..|-..++-+ -.+++..+++|.+.++
T Consensus 1940 igtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vr 2019 (2142)
T KOG0399|consen 1940 IGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVR 2019 (2142)
T ss_pred cccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEE
Confidence 888777776543 0 0111112222211110 1122222333333222
Q ss_pred --------------EcCC-CCEEeCCEEEEccCCc-cCCchhhhcCCccc-CCCEEe-CCCCCCCCCceEEeccccccCC
Q 012165 268 --------------KLED-GSTIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAFPL 329 (469)
Q Consensus 268 --------------~~~~-g~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~V-d~~~~t~~~~Vfa~GD~a~~~~ 329 (469)
+..+ .+.++||+||+|.|+. |.....++++++.+ ++.|.+ ++.+.|.++.|||+|||.....
T Consensus 2020 vew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqs 2099 (2142)
T KOG0399|consen 2020 VEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQS 2099 (2142)
T ss_pred EEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCce
Confidence 2222 2468999999999997 55456788888877 455665 4568899999999999998644
No 77
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.6e-25 Score=199.61 Aligned_cols=197 Identities=27% Similarity=0.450 Sum_probs=150.8
Q ss_pred EeCCC--eEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCC
Q 012165 154 ITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231 (469)
Q Consensus 154 ~~~~g--~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~ 231 (469)
+..+| +.+.++.+|||||.+|+ .|.+||...-++ .++.+......+.+.+|||+|++++|+|..|+.+|.
T Consensus 151 t~~~gk~~~~ta~~fvIatG~RPr-Yp~IpG~~Ey~I-------TSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~ 222 (503)
T KOG4716|consen 151 TNKKGKERFLTAENFVIATGLRPR-YPDIPGAKEYGI-------TSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGY 222 (503)
T ss_pred ecCCCceEEeecceEEEEecCCCC-CCCCCCceeeee-------cccccccccCCCCceEEEccceeeeehhhhHhhcCC
Confidence 33444 35899999999999998 576666322221 244555555567778899999999999999999999
Q ss_pred eEe-----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---C--CEEeCCEEEEccCCccC
Q 012165 232 DTT-----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPT 289 (469)
Q Consensus 232 ~v~-----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vi~a~G~~p~ 289 (469)
+++ .+.+.+++.||+|.....+.+++..++++. .|...+ + -+-++|.|+||+|+.+.
T Consensus 223 ~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~ 301 (503)
T KOG4716|consen 223 DVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKAL 301 (503)
T ss_pred CcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccc
Confidence 988 567889999999999988888887767764 333322 2 24679999999999998
Q ss_pred Cch--hhhcCCccc--CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCC
Q 012165 290 VSP--FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTY 363 (469)
Q Consensus 290 ~~~--~~~~gl~~~--~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~ 363 (469)
++- |+..|+..+ .|.|.||+.-+|++|+|||+||+.... .+.-+.|++.|+.+|+.|.++.. ..|
T Consensus 302 ~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy 372 (503)
T KOG4716|consen 302 TDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDY 372 (503)
T ss_pred hhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeec
Confidence 764 678888774 578999999999999999999998743 23445699999999999987653 356
Q ss_pred CCCCc
Q 012165 364 DYLPY 368 (469)
Q Consensus 364 ~~~p~ 368 (469)
..+|.
T Consensus 373 ~~V~T 377 (503)
T KOG4716|consen 373 DDVAT 377 (503)
T ss_pred cCCce
Confidence 65653
No 78
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-25 Score=204.04 Aligned_cols=259 Identities=22% Similarity=0.326 Sum_probs=183.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (469)
...|||+||||||||.+||.+.+|+|...+ .+-|+- +.+ .+.. ...+++-......+..+...+.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTG--l~aerf---GGQ-------vldT--~~IENfIsv~~teGpkl~~ale~ 274 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTG--LVAERF---GGQ-------VLDT--MGIENFISVPETEGPKLAAALEA 274 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhh--hhhhhh---CCe-------eccc--cchhheeccccccchHHHHHHHH
Confidence 356999999999999999999999997311 111111 000 0000 00001100001111111223455
Q ss_pred HHHHCCcEEEeCCcEEEEeCC-----CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHH
Q 012165 129 WYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL 200 (469)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~ 200 (469)
..+++.+++....+++++.+. -..|++++|..+..+.+|||||++++.+ .+||++ -+|+.|+.. +
T Consensus 275 Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~-nvPGE~e~rnKGVayCPH------C 347 (520)
T COG3634 275 HVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNM-NVPGEDEYRNKGVAYCPH------C 347 (520)
T ss_pred HHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcC-CCCchHHHhhCCeeeCCC------C
Confidence 677888887766677777763 2489999999999999999999999865 456653 367776642 2
Q ss_pred HHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHH-HHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 012165 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAV 267 (469)
Q Consensus 201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l-~~~gV~~~~~~~v~~i~~~~~~~v~~v 267 (469)
...+.++|+|+|||||.+|+|.|-.|+..-.+|+ .+++.+ .-.+|+++++...++|..+ ..+|.++
T Consensus 348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gd-g~kV~Gl 426 (520)
T COG3634 348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGD-GDKVTGL 426 (520)
T ss_pred CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhcCCCcEEEecceeeEEecC-Cceecce
Confidence 2346789999999999999999999998887887 223333 3469999999999999843 3456666
Q ss_pred EcCC---C--CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCc
Q 012165 268 KLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLK 330 (469)
Q Consensus 268 ~~~~---g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~ 330 (469)
...+ | ..++-+-|++-+|..||++||+.. ++.+ +|-|.||.+..||+|+|||+|||+..+..
T Consensus 427 ~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yK 494 (520)
T COG3634 427 EYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYK 494 (520)
T ss_pred EEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccc
Confidence 5543 3 357788899999999999999987 5554 68899999999999999999999987764
No 79
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-24 Score=187.85 Aligned_cols=262 Identities=21% Similarity=0.290 Sum_probs=185.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCc-ccccCCCCCCCCCCCCCc-cccCCCCCCCCHh
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT-KGYLFPLDKKPARLPGFH-TCVGSGGERQTPE 128 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 128 (469)
+.+|+|||+|||+.+||+++.+.-. +-+|+|.--. .... .+.+ ......+++|+|. .+.+.+..++..+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarael---kPllfEG~~~-----~~i~pGGQL-tTTT~veNfPGFPdgi~G~~l~d~mrk 78 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAEL---KPLLFEGMMA-----NGIAPGGQL-TTTTDVENFPGFPDGITGPELMDKMRK 78 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhccc---CceEEeeeec-----cCcCCCcee-eeeeccccCCCCCcccccHHHHHHHHH
Confidence 4589999999999999999999865 5677764321 1111 1111 1234466788886 3556666666777
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHH--hh
Q 012165 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS--SL 204 (469)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--~~ 204 (469)
+..+.|.+++. .+|.++|...+ .+.+ +.+.+.+|.+|+|||+..+++. .||. .++.+.-+.+..+.-+.. .+
T Consensus 79 qs~r~Gt~i~t-EtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~-ge~~fWqrGiSaCAVCDGaapi 154 (322)
T KOG0404|consen 79 QSERFGTEIIT-ETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGE-GEGEFWQRGISACAVCDGAAPI 154 (322)
T ss_pred HHHhhcceeee-eehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCC-CcchHHhcccchhhcccCcchh
Confidence 77888999888 48898988765 5555 4456899999999999887654 2343 122222232222322222 23
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE----
Q 012165 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV---- 267 (469)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v---- 267 (469)
.+.|..+|||||.+++|-|.+|.+++.+|. +.++..+..+|++++++.+.+...+ .+.+..+
T Consensus 155 frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn 233 (322)
T KOG0404|consen 155 FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGD-GKLLNGLRIKN 233 (322)
T ss_pred hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEechhhhhhccC-cccccceEEEe
Confidence 578899999999999999999999999987 3345566679999999877776532 2222233
Q ss_pred -EcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeC-CCCCCCCCceEEecccccc
Q 012165 268 -KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAF 327 (469)
Q Consensus 268 -~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd-~~~~t~~~~Vfa~GD~a~~ 327 (469)
...+-+.++.+-+++++|..|++.++++ .++.| +|+|++- ..-.||+|++||+||+...
T Consensus 234 ~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ 295 (322)
T KOG0404|consen 234 VKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK 295 (322)
T ss_pred cccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchH
Confidence 3333457999999999999999999987 56665 5778876 5677999999999999863
No 80
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.91 E-value=5.3e-23 Score=207.46 Aligned_cols=280 Identities=18% Similarity=0.190 Sum_probs=175.1
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCCC---------------cccc---cCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPAL---------------TKGY---LFPLDK 106 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~l---------------~~~~---~~~~~~ 106 (469)
.+.++|+|||||+|||+||++|++.|+ +++++|+++..+ |. +.. +..| .....+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~---~v~vfE~~~~vGG~W~~~-~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGH---TVVVFEREKQVGGLWVYT-PKSESDPLSLDPTRSIVHSSVYESLRTNLPR 83 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCC---eEEEEecCCCCcceeecC-CCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence 446899999999999999999999987 799999987654 21 100 0000 000000
Q ss_pred CC---CCCCCCccc-----------cCCCCCCCCHhHHHHCCcE--EEeCCcEEEEeCCCc--EEEeCCC--e--EEEec
Q 012165 107 KP---ARLPGFHTC-----------VGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYG 164 (469)
Q Consensus 107 ~~---~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~~--~v~~~~g--~--~~~yd 164 (469)
.. .++|..... ...+....+.++.++.++. ++++++|+.+++.+. +|++.++ . +..||
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d 163 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD 163 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence 00 011111000 0011112233445567877 788999999988654 4555432 2 46799
Q ss_pred cEEeccC--CCCCcCCCCCCC-CcCcE-EEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeHH--
Q 012165 165 SLIVATG--CTASRFPEKIGG-YLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQ-- 238 (469)
Q Consensus 165 ~lVlAtG--~~~~~~~~~~g~-~~~~v-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~~-- 238 (469)
+||+||| +.|+ .|.++|. ..+|. .+..++.+.+ ...+|+|+|||+|.+|+|+|..|...+.+|+...+
T Consensus 164 ~VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 164 AVVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEeccCCCCCc-CCCCCCcccCCceEEEecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 9999999 5665 5666764 24442 1111111111 23789999999999999999999999988872111
Q ss_pred ------HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCC-
Q 012165 239 ------LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF- 311 (469)
Q Consensus 239 ------~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~- 311 (469)
.+......+..+..|..+.. ++ .|+++||+.+++|.||+|||++++.+||+..+ .+.+|++.
T Consensus 238 ~~~~~~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~------~i~v~~~~v 306 (461)
T PLN02172 238 ESDTYEKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNG------YMRIDENRV 306 (461)
T ss_pred cccccccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCccc------ceeeCCCcc
Confidence 11122234555556666552 33 47899999999999999999999999987532 34444321
Q ss_pred -----C---CC-CCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 012165 312 -----R---TR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 360 (469)
Q Consensus 312 -----~---t~-~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~ 360 (469)
. .. .|+++.+|=... ...+.....||+.+|+.+.|...
T Consensus 307 ~~Ly~~~f~~~~~p~LafiG~~~~-----------~~~f~~~E~Qa~~~a~v~sG~~~ 353 (461)
T PLN02172 307 EPLYKHVFPPALAPGLSFIGLPAM-----------GIQFVMFEIQSKWVAAVLSGRVT 353 (461)
T ss_pred hhhHHhhcCCCCCCcEEEEecccc-----------ccCchhHHHHHHHHHHHHcCCCC
Confidence 1 12 489999993321 11344577899999988876543
No 81
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.87 E-value=8.5e-22 Score=178.55 Aligned_cols=283 Identities=19% Similarity=0.251 Sum_probs=187.2
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC
Q 012165 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (469)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (469)
....+++|+|||||.+|++.|..+.++-. .++|-|||+...+.|+ |.+. +.+..-...+- .++.
T Consensus 35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~-~g~vgIvep~e~HyYQ-PgfT---LvGgGl~~l~~-----------srr~ 98 (446)
T KOG3851|consen 35 FARKHFKVLVVGGGSGGIGMAAKFYRKLG-SGSVGIVEPAEDHYYQ-PGFT---LVGGGLKSLDS-----------SRRK 98 (446)
T ss_pred hcccceEEEEEcCCcchhHHHHHHHhhcC-CCceEEecchhhcccC-cceE---Eeccchhhhhh-----------ccCc
Confidence 34578899999999999999999988753 7899999999998776 6542 11111111000 0011
Q ss_pred HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCC----CCcCcEEEecCHHHHHHHHH
Q 012165 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALIS 202 (469)
Q Consensus 127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g----~~~~~v~~~~~~~~~~~~~~ 202 (469)
...+--.+...+. ..|...++++++|.+.+|++|.||+||||+|.+-+ ...++| .+.|++-+..+....++..+
T Consensus 99 ~a~liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~ 176 (446)
T KOG3851|consen 99 QASLIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVYK 176 (446)
T ss_pred ccccccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHHH
Confidence 1111122333333 47888999999999999999999999999998754 455544 24567766666555555444
Q ss_pred hh---hcCCeEEEEcCChH--------HHHHH-HHHHhCCCeEe--------------------eeHHHHHHcCcEEEcC
Q 012165 203 SL---EKAKKVVVVGGGYI--------GMEVA-AAAVGWKLDTT--------------------RYEQLYQQNGVKFVKG 250 (469)
Q Consensus 203 ~~---~~~~~vvVvG~G~~--------g~e~A-~~l~~~g~~v~--------------------~~~~~l~~~gV~~~~~ 250 (469)
.+ +.+.-+.-.-.+++ .+-++ .+++++|.+-. .+++..++++|++...
T Consensus 177 ~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~k 256 (446)
T KOG3851|consen 177 ELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYK 256 (446)
T ss_pred HHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeec
Confidence 33 34444444433333 23333 25666665533 5677788899999998
Q ss_pred CeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCC-CCCC-CCCceEEeccccc
Q 012165 251 ASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAIGDVAA 326 (469)
Q Consensus 251 ~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~-~~~t-~~~~Vfa~GD~a~ 326 (469)
....++..++...+....-+-| ++++++++-+....++. +++.++.+.+..|++.||. ++|. .+||||++|||..
T Consensus 257 rnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n 335 (446)
T KOG3851|consen 257 RNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMN 335 (446)
T ss_pred cceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceeeccccC
Confidence 8888887432221211111224 57899999999888876 7788888877789999995 6776 8999999999999
Q ss_pred cCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165 327 FPLKMYDRTARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 327 ~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
.|... .......|...+-+|+.
T Consensus 336 ~PnsK--------TaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 336 LPNSK--------TAAAVAAQSPVVDKNLT 357 (446)
T ss_pred CCchh--------hHHHHHhcCchhhhhHH
Confidence 88743 22233345566666664
No 82
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.85 E-value=7.2e-23 Score=185.52 Aligned_cols=188 Identities=30% Similarity=0.477 Sum_probs=130.7
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (469)
||||||||+||++||.+|++.+. +++++++.+..+|....++...+.............. .....+.+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 70 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPAR-------LFKLVDQLKN 70 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHH-------HGHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCC---eEEEEeccccccccccccccccccccccccccccccc-------cccccccccc
Confidence 69999999999999999998876 8999998876555433333322111000000000000 0012233467
Q ss_pred CCcEEEeCCcEEEEeCCCcEE----------EeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHH
Q 012165 133 KGIEMIYQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202 (469)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~~v----------~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~ 202 (469)
.+++++.++++.+++...+.+ ...++.++.||+||||||+.|+ .|.++|. +.....++..+++.+..
T Consensus 71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~-~~~i~g~--~~~~~~~~~~~~~~~~~ 147 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR-TPNIPGE--EVAYFLRGVDDAQRFLE 147 (201)
T ss_dssp HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE-EESSTTT--TTECBTTSEEHHHHHHT
T ss_pred ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc-eeecCCC--ccccccccccccccccc
Confidence 899998888999999988742 2345668999999999999876 3555554 22223355567788877
Q ss_pred hhhcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEE
Q 012165 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 282 (469)
Q Consensus 203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~ 282 (469)
....+++++|||
T Consensus 148 ~~~~~~~v~VvG-------------------------------------------------------------------- 159 (201)
T PF07992_consen 148 LLESPKRVAVVG-------------------------------------------------------------------- 159 (201)
T ss_dssp HSSTTSEEEEES--------------------------------------------------------------------
T ss_pred cccccccccccc--------------------------------------------------------------------
Confidence 777777999999
Q ss_pred ccCCccCCchh-hhcCCccc-CCCEEeCCCCCCCCCceEEeccccccC
Q 012165 283 GIGAKPTVSPF-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP 328 (469)
Q Consensus 283 a~G~~p~~~~~-~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~ 328 (469)
+++| +..+++.+ +|++.||+++||+.|||||+|||+..+
T Consensus 160 -------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 -------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp -------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred -------ccccccccccccccccccccccccccccccccccccccccC
Confidence 4556 78888875 678999999999999999999999754
No 83
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=166.32 Aligned_cols=248 Identities=25% Similarity=0.377 Sum_probs=157.8
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (469)
+.+|||||+||.+||..|+.+-+ ..+|.++...+.. .|.. ..+ |+...+-.. .
T Consensus 1 kfivvgggiagvscaeqla~~~p-sa~illitass~vksvtn~~~--i~~-ylekfdv~e-------------------q 57 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEP-SAEILLITASSFVKSVTNYQK--IGQ-YLEKFDVKE-------------------Q 57 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCC-CCcEEEEeccHHHHHHhhHHH--HHH-HHHhcCccc-------------------c
Confidence 46999999999999999999864 7899999987642 1110 111 111100000 0
Q ss_pred HHHHCCcEE--EeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhc
Q 012165 129 WYKEKGIEM--IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 206 (469)
Q Consensus 129 ~~~~~~i~~--~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~ 206 (469)
-..+.+.++ +.+ .|..++...+.+.+++|.++.|++|+++||++|...- .+ .-+.+...|+.+..+.+...+.+
T Consensus 58 ~~~elg~~f~~~~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~k 133 (334)
T KOG2755|consen 58 NCHELGPDFRRFLN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVK 133 (334)
T ss_pred chhhhcccHHHHHH-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhh
Confidence 011111111 122 3666777888999999999999999999999987432 22 24567778888888888888899
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHH------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQL------------------------------ 239 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~------------------------------ 239 (469)
.|.|.|+|.|-+++|++.++....+.-. .+...
T Consensus 134 aK~VlilgnGgia~El~yElk~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg 213 (334)
T KOG2755|consen 134 AKIVLILGNGGIAMELTYELKILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVG 213 (334)
T ss_pred cceEEEEecCchhHHHHHHhhcceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcc
Confidence 9999999999999999999875432111 00000
Q ss_pred ------------------HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhcCCc
Q 012165 240 ------------------YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN 299 (469)
Q Consensus 240 ------------------l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~ 299 (469)
-+++-+....+..+....+.+...+.......| ..+.||.+++++|..||.+++-...+.
T Consensus 214 ~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq 293 (334)
T KOG2755|consen 214 PALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQ 293 (334)
T ss_pred cccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhh
Confidence 001111111111111001111111111111112 367899999999999999975544444
Q ss_pred c-cCCCEEeCCCCCCCCCceEEecccccc
Q 012165 300 S-SVGGIQVDGQFRTRMPGIFAIGDVAAF 327 (469)
Q Consensus 300 ~-~~g~i~Vd~~~~t~~~~Vfa~GD~a~~ 327 (469)
. ++|++.||+.|+|+.|++||+||+...
T Consensus 294 ~~edggikvdd~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 294 ITEDGGIKVDDAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred hccccCeeehhhccccccceeeecceecc
Confidence 3 468999999999999999999999873
No 84
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.84 E-value=5.5e-20 Score=187.97 Aligned_cols=279 Identities=21% Similarity=0.289 Sum_probs=149.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--C--CC---C-----------CCccccc-CCCCCCCCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--Y--ER---P-----------ALTKGYL-FPLDKKPARLP 112 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~--~~---~-----------~l~~~~~-~~~~~~~~~~~ 112 (469)
++|+|||||++||++|+.|++.|+ +++++|+++..+ | .. + ..++... +.....+.+.|
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~---~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL---EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT----EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCC---CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 689999999999999999999998 799999998765 1 10 0 0111111 11111222222
Q ss_pred CCccccCCCCCCCCHhHHHHCCc--EEEeCCcEEEEeCCC-------cEEEeCC-Ce--EEEeccEEeccCCC--CCcCC
Q 012165 113 GFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCT--ASRFP 178 (469)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~-------~~v~~~~-g~--~~~yd~lVlAtG~~--~~~~~ 178 (469)
.|... .+..+.+.++.++.++ .++++++|+++.... -.|++.+ |+ +-.||+||+|||.. |. +|
T Consensus 79 ~f~~~--~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~-~P 155 (531)
T PF00743_consen 79 DFPSH--SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPN-IP 155 (531)
T ss_dssp SSEBH--HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCES-B-
T ss_pred CCCCH--HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCC-CC
Confidence 22110 0111223344556666 378899999987532 2466643 32 45799999999954 43 34
Q ss_pred C--CCCCC-cCcE-EEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------
Q 012165 179 E--KIGGY-LPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------- 234 (469)
Q Consensus 179 ~--~~g~~-~~~v-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------- 234 (469)
. ++|.+ .+|- .+..+..+. ...++|+|+|||+|.+|+++|..++....++.
T Consensus 156 ~~~~~G~e~F~G~i~HS~~yr~~-----~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHSKDYRDP-----EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--TG-----GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhhcCCeeEEccccCcCh-----hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 2 44532 3443 232222221 22479999999999999999999998877765
Q ss_pred -------------------------------------------------------eeHHHHHHcCcEEEcCCeEEEEEeC
Q 012165 235 -------------------------------------------------------RYEQLYQQNGVKFVKGASIKNLEAG 259 (469)
Q Consensus 235 -------------------------------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~ 259 (469)
.+...+....|++.. .|.+++.+
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~~~~ 308 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRFTEN 308 (531)
T ss_dssp --------------------------------------------------------------------EE---EEEE-SS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence 111222222233221 23444311
Q ss_pred CCCcEEEEEcCCCCEE-eCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCC---CCCCCceEEeccccccCCccCCcc
Q 012165 260 SDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF---RTRMPGIFAIGDVAAFPLKMYDRT 335 (469)
Q Consensus 260 ~~~~v~~v~~~~g~~i-~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~---~t~~~~Vfa~GD~a~~~~~~~~~~ 335 (469)
+|.+.||+++ ++|.||+|||++.+.+||++.-+...++.+..-.++ +...|++..+|=+... |
T Consensus 309 ------~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-----g-- 375 (531)
T PF00743_consen 309 ------SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-----G-- 375 (531)
T ss_dssp ------EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-----S--
T ss_pred ------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----c--
Confidence 5778999875 699999999999998888875444333332222222 1135788888854321 1
Q ss_pred cccchHHHHHHHHHHHHHHHhcCC
Q 012165 336 ARVEHVDHARQSAQHCIKALLSAQ 359 (469)
Q Consensus 336 ~~~~~~~~A~~~a~~~a~~i~~~~ 359 (469)
..+..+..||+.+|+-+.|..
T Consensus 376 ---~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 376 ---SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSS
T ss_pred ---ccccccccccccccccccccc
Confidence 134557889999998887644
No 85
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.71 E-value=3e-16 Score=150.35 Aligned_cols=282 Identities=22% Similarity=0.331 Sum_probs=159.0
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (469)
....++++|||||+||++||+.|++.|+ ++.|+|+++..+.+...+.+.+-........-.| ...
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G~---~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP------------~m~ 185 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMGF---KVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAP------------KMV 185 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcCC---eEEEEecCCcccccHHhhhccCCCcccchhhccc------------hhh
Confidence 3456899999999999999999999999 7999999998876654444422111111110011 111
Q ss_pred hHHHHCCcEEEeCCcEEEEeCC----------------------------------------------------------
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIE---------------------------------------------------------- 149 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~---------------------------------------------------------- 149 (469)
+...+.++++++.++|..++-.
T Consensus 186 ~v~~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~ 265 (622)
T COG1148 186 EVSNHPNIELITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLN 265 (622)
T ss_pred hhccCCceeeeeeeeeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccc
Confidence 2223334444444444332110
Q ss_pred -------------------CcEEEeCC-Ce--EEEeccEEeccCCCCCcCCCC--CC-CCcCcEEEecCHHHHHHHHHhh
Q 012165 150 -------------------KQTLITNS-GK--LLKYGSLIVATGCTASRFPEK--IG-GYLPGVHYIRDVADADALISSL 204 (469)
Q Consensus 150 -------------------~~~v~~~~-g~--~~~yd~lVlAtG~~~~~~~~~--~g-~~~~~v~~~~~~~~~~~~~~~~ 204 (469)
...|.++. ++ ++....+|+|||-.+...... -| ...+++.+. ...+++...-
T Consensus 266 ~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~---lElErml~~~ 342 (622)
T COG1148 266 YNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN---LELERMLNPN 342 (622)
T ss_pred cccChhhhccchhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhH---HHHHHHhccC
Confidence 00111222 22 577889999999776422111 11 113444332 2334433211
Q ss_pred -------------hcCCeEEEE---cCCh--------------HHHHHHHHHHhCCCeE--e---------------eeH
Q 012165 205 -------------EKAKKVVVV---GGGY--------------IGMEVAAAAVGWKLDT--T---------------RYE 237 (469)
Q Consensus 205 -------------~~~~~vvVv---G~G~--------------~g~e~A~~l~~~g~~v--~---------------~~~ 237 (469)
+++++|+.| |+-. .++.-|....++..+. + ++.
T Consensus 343 GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG~~yEefY~ 422 (622)
T COG1148 343 GPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEEFYV 422 (622)
T ss_pred CCCCceEEecCCCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccCccHHHHHH
Confidence 245677765 5543 1233333444443332 2 333
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-----CEEeCCEEEEccCCccCCc---hhhhcCCccc-CCCEEeC
Q 012165 238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPTVS---PFERVGLNSS-VGGIQVD 308 (469)
Q Consensus 238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~~D~vi~a~G~~p~~~---~~~~~gl~~~-~g~i~Vd 308 (469)
+.-++.||+++.+ ++.+|...+++.+ .|..+|. .++++|+|++++|+.|... +.+-+||..+ +|++...
T Consensus 423 ~~Q~~~gV~fIRG-rvaei~e~p~~~l-~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~ 500 (622)
T COG1148 423 RSQEDYGVRFIRG-RVAEIAEFPKKKL-IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEA 500 (622)
T ss_pred hhhhhhchhhhcC-ChHHheeCCCCee-EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccC
Confidence 3334789999988 5777776666663 3544443 4789999999999998643 3566788775 5677664
Q ss_pred -CCC---CCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165 309 -GQF---RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 309 -~~~---~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
+.+ +|+.++||.+|-+.+ |... ..++.+|..+|..+++.+.
T Consensus 501 hPkl~pv~s~~~GIflAG~aqg-PkdI------~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 501 HPKLRPVDSNRDGIFLAGAAQG-PKDI------ADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred CCCcccccccCCcEEEeecccC-CccH------HHHHHHhHHHHHHHHHHhh
Confidence 444 468899999995554 3321 2345555555555555554
No 86
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.67 E-value=2e-15 Score=151.99 Aligned_cols=177 Identities=21% Similarity=0.256 Sum_probs=107.4
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CC--CCCCccccc-CCCCCC--CCCCCCC
Q 012165 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YE--RPALTKGYL-FPLDKK--PARLPGF 114 (469)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~--~~~l~~~~~-~~~~~~--~~~~~~~ 114 (469)
+.+.++||+|||||++||++|..|++.|.+ +++++|++...+ |. +...++.++ ++.... ...++.+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence 456778999999999999999999999983 299999997543 11 111111111 111111 1111111
Q ss_pred ccccCCCCCCCCHhHHHHCCcE--EEeCCcEEEEeCCC----cEEEeCCCeE--EEeccEEeccCC--CCCcCCCCCCCC
Q 012165 115 HTCVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGC--TASRFPEKIGGY 184 (469)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~----~~v~~~~g~~--~~yd~lVlAtG~--~~~~~~~~~g~~ 184 (469)
. .......++++++++. +..+..|..++.+. .+|+++++.. +.+|+||+|||. .|. .|.++|.+
T Consensus 82 ~-----~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G~~ 155 (443)
T COG2072 82 A-----EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAGLD 155 (443)
T ss_pred c-----cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCCcc
Confidence 1 0112334556666654 33344555555443 2678887765 459999999994 454 55555543
Q ss_pred cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 185 ~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
......+. .++........+|+|+|||+|.+|++++..|.+.+.+|+
T Consensus 156 ~f~g~~~H---S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt 202 (443)
T COG2072 156 EFKGRILH---SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVT 202 (443)
T ss_pred CCCceEEc---hhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeE
Confidence 21111111 111111123579999999999999999999999998887
No 87
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.66 E-value=4.2e-16 Score=141.37 Aligned_cols=170 Identities=25% Similarity=0.324 Sum_probs=95.0
Q ss_pred EEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC--C-CCCcccccCCCCC-CCCCCCCC---c--c---------
Q 012165 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE--R-PALTKGYLFPLDK-KPARLPGF---H--T--------- 116 (469)
Q Consensus 55 vIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~--~-~~l~~~~~~~~~~-~~~~~~~~---~--~--------- 116 (469)
+|||||+|||++|.+|++.|.+ +++|+|+++..+-. . +.... ...+... ....++.+ . .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~~~Gg~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID--PVVVLERNDRPGGVWRRYYSYTR-LHSPSFFSSDFGLPDFESFSFDDSPEWRWPHD 77 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT--BSSSCCTGGSS--CCCHSCHHHHHHHHHSBS
T ss_pred CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCCCCCeeEEeCCCCc-cccCccccccccCCcccccccccCCCCCCCcc
Confidence 7999999999999999999872 39999998665310 0 00000 0000000 00001100 0 0
Q ss_pred -ccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCC--CCCcCCCCCC-CCcCcEEE
Q 012165 117 -CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHY 190 (469)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~--~~~~~~~~~g-~~~~~v~~ 190 (469)
....+....+..+.++++++++++++|+++..++ ..|++.+++++.+|+||+|||. .|+ .|.+++ .+. ...+
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h 155 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIH 155 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEE
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEe
Confidence 0001111223345567799999999999998765 4788989888999999999995 554 465666 322 3333
Q ss_pred ecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 191 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
..+..+. ....+++|+|||+|.+|++++..|.+.+.+|+
T Consensus 156 ~~~~~~~-----~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~ 194 (203)
T PF13738_consen 156 SADWRDP-----EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVT 194 (203)
T ss_dssp GGG-STT-----GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEE
T ss_pred hhhcCCh-----hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEE
Confidence 3222111 12467999999999999999999999998776
No 88
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.65 E-value=2.1e-15 Score=146.49 Aligned_cols=228 Identities=22% Similarity=0.299 Sum_probs=121.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccc------ccCCCCCCCCCCCC----Cccc-cC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YLFPLDKKPARLPG----FHTC-VG 119 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~----~~~~-~~ 119 (469)
.+|+++||.||++|+.|..|.+.+ ..++..+|+.+.+.|+.-.+..+ ++.+.- ..+-|. |... ..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlv--t~~~P~s~~sflnYL~~ 77 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLV--TLRDPTSPFSFLNYLHE 77 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSS--TTT-TTSTTSHHHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccC--cCcCCCCcccHHHHHHH
Confidence 479999999999999999999986 45899999999877663222111 111100 000010 0000 00
Q ss_pred CC---------CCC-------CCHhHHH-HCCcEEEeCCcEEEEeCCC------cEEEeC----CCeEEEeccEEeccCC
Q 012165 120 SG---------GER-------QTPEWYK-EKGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGC 172 (469)
Q Consensus 120 ~~---------~~~-------~~~~~~~-~~~i~~~~~~~v~~id~~~------~~v~~~----~g~~~~yd~lVlAtG~ 172 (469)
.+ ... .+..|+. +..-.+..+.+|+.|++.. ..|.+. +++.+.+++||||||.
T Consensus 78 ~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 78 HGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp TT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred cCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 00 000 0111222 2343377888999998754 366662 4568999999999998
Q ss_pred CCCcCCCC-CCCC-cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCC--eEe--------------
Q 012165 173 TASRFPEK-IGGY-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTT-------------- 234 (469)
Q Consensus 173 ~~~~~~~~-~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~v~-------------- 234 (469)
.|. +|.. .... .+.+++..++.... ......++|+|||||.+|.|++..|.+.+. +++
T Consensus 158 ~P~-iP~~~~~~~~~~~v~Hss~~~~~~---~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s 233 (341)
T PF13434_consen 158 QPR-IPEWFQDLPGSPRVFHSSEYLSRI---DQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDS 233 (341)
T ss_dssp EE----GGGGGGTT-TTEEEGGGHHHHH---T-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----
T ss_pred CCC-CCcchhhcCCCCCEEEehHhhhcc---ccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccc
Confidence 886 4533 2211 25677665433321 114578999999999999999999988875 444
Q ss_pred -------------------------------------------------eeH-HHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 012165 235 -------------------------------------------------RYE-QLYQQNGVKFVKGASIKNLEAGSDGRV 264 (469)
Q Consensus 235 -------------------------------------------------~~~-~~l~~~gV~~~~~~~v~~i~~~~~~~v 264 (469)
.++ +...+..++++.+++|+.++..+++.+
T Consensus 234 ~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~ 313 (341)
T PF13434_consen 234 PFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV 313 (341)
T ss_dssp CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE
T ss_pred cchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE
Confidence 111 222345688999999999998765444
Q ss_pred EEEEcCC---C--CEEeCCEEEEccCCc
Q 012165 265 AAVKLED---G--STIDADTIVIGIGAK 287 (469)
Q Consensus 265 ~~v~~~~---g--~~i~~D~vi~a~G~~ 287 (469)
.+.+.+ + .++++|.||+|||++
T Consensus 314 -~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 314 -RLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp -EEEEEETTT--EEEEEESEEEE---EE
T ss_pred -EEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 355543 2 478999999999975
No 89
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.63 E-value=4.4e-15 Score=138.46 Aligned_cols=157 Identities=19% Similarity=0.239 Sum_probs=102.0
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (469)
.+..++|.|||+||||+++|..|.++. +...|+|+|+.+.+. .|...-+.+..+...+. ...+.
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~-~~~~Vdi~Ek~PvPF----GLvRyGVAPDHpEvKnv-----------intFt 80 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRH-PNAHVDIFEKLPVPF----GLVRYGVAPDHPEVKNV-----------INTFT 80 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcC-CCCeeEeeecCCccc----ceeeeccCCCCcchhhH-----------HHHHH
Confidence 345569999999999999999999973 467999999998752 12221222322222111 12344
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHH-------HHHH
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADAL 200 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~ 200 (469)
..+++....+.-+..| +..+.+..- +-.||.+|||+|+...+-..+||+++++|+..+.+-. .+.+
T Consensus 81 ~~aE~~rfsf~gNv~v------G~dvsl~eL-~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~l 153 (468)
T KOG1800|consen 81 KTAEHERFSFFGNVKV------GRDVSLKEL-TDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNL 153 (468)
T ss_pred HHhhccceEEEeccee------cccccHHHH-hhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCccccc
Confidence 5556667777766444 122222211 1379999999998765556789998899887653211 1111
Q ss_pred HHhhhcCCeEEEEcCChHHHHHHHHHHh
Q 012165 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVG 228 (469)
Q Consensus 201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~ 228 (469)
+....+++++|||.|.+++++|..|..
T Consensus 154 -e~dls~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 154 -EPDLSGRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred -CcccccceEEEEccCchhhhhhhhhhC
Confidence 111237899999999999999998764
No 90
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.62 E-value=7.8e-14 Score=132.13 Aligned_cols=273 Identities=18% Similarity=0.223 Sum_probs=167.5
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccc----------ccCCCCCC----------
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG----------YLFPLDKK---------- 107 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~----------~~~~~~~~---------- 107 (469)
++...|++.||-||+-|+.|..|.+.+. .+...+|+.+.+-|+.-.+..+ +....++.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence 4667899999999999999999988763 4799999999887763222111 00000000
Q ss_pred -CCCCCCCcccc----CCCCCCCCHhHHHHCCcEEEeCCcEE---EEeCCCc---EEEeCCCeEEEeccEEeccCCCCCc
Q 012165 108 -PARLPGFHTCV----GSGGERQTPEWYKEKGIEMIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 108 -~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~v~---~id~~~~---~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
..++..|.... .......+-.|....--.++++++|+ .++.+.. .+.+.++..+.++.|||++|.+|..
T Consensus 80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred HcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence 00111110000 00000112234444456678888998 4444443 3667778889999999999999985
Q ss_pred CCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCe----Ee------------------
Q 012165 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD----TT------------------ 234 (469)
Q Consensus 177 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~----v~------------------ 234 (469)
+|.......+.+++...+. .-+..+...++|.|||+|.+|.|+-..|...-.. ..
T Consensus 160 P~~f~~l~~~~vfHss~~~---~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~ 236 (436)
T COG3486 160 PPCFRSLIGERVFHSSEYL---ERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGL 236 (436)
T ss_pred ChHHhCcCccceeehHHHH---HhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhh
Confidence 4433332223455543221 1122233455699999999999999887643211 11
Q ss_pred --------------------------------------------eeHHHHH--HcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 012165 235 --------------------------------------------RYEQLYQ--QNGVKFVKGASIKNLEAGSDGRVAAVK 268 (469)
Q Consensus 235 --------------------------------------------~~~~~l~--~~gV~~~~~~~v~~i~~~~~~~v~~v~ 268 (469)
.+++.+. +..|.++.++++..++..++|++ .+.
T Consensus 237 e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~ 315 (436)
T COG3486 237 EYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLT 315 (436)
T ss_pred hhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEE
Confidence 2222222 45788999999999997767753 343
Q ss_pred cC-----CCCEEeCCEEEEccCCccCCc-hhhhcC--Cc-ccCCCEEeCCCCCCC-----CCceEEeccccc
Q 012165 269 LE-----DGSTIDADTIVIGIGAKPTVS-PFERVG--LN-SSVGGIQVDGQFRTR-----MPGIFAIGDVAA 326 (469)
Q Consensus 269 ~~-----~g~~i~~D~vi~a~G~~p~~~-~~~~~g--l~-~~~g~i~Vd~~~~t~-----~~~Vfa~GD~a~ 326 (469)
+. ..++++.|.||+|||++...+ |++.+. +. +++|...|+..++.. .-.||+-|-+..
T Consensus 316 ~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 316 LRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred EeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence 32 235789999999999995544 666554 22 346789998876542 136999986654
No 91
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=1.1e-14 Score=144.62 Aligned_cols=235 Identities=18% Similarity=0.239 Sum_probs=139.6
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCC--------CCcccccCCCCCCCCCCCCCccc
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP--------ALTKGYLFPLDKKPARLPGFHTC 117 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~--------~l~~~~~~~~~~~~~~~~~~~~~ 117 (469)
.++.++|+|||||+|||.+|+.|++.|+ +++++|+.+..+ |... .+.+.+.....+....++.|...
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCc
Confidence 3557899999999999999999999998 799999988654 1111 11111222222222222322211
Q ss_pred cC-C-------CCCCCCHhHHHHCCc--EEEeCCcEEEEeCCC-c--EEEeCCC----eEEEeccEEeccCCCC-CcCCC
Q 012165 118 VG-S-------GGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-Q--TLITNSG----KLLKYGSLIVATGCTA-SRFPE 179 (469)
Q Consensus 118 ~~-~-------~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~-~--~v~~~~g----~~~~yd~lVlAtG~~~-~~~~~ 179 (469)
.. . +..+.+.++.++.++ .+.++++|..++... . .|.+.++ ++.-||.|++|||-.. .++|.
T Consensus 80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence 11 0 111223344556665 467778888888765 2 4555443 4678999999999772 23566
Q ss_pred CCCC---CcCcEEEecCHHHHHHHH-HhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeH-H--HHHH------cCcE
Q 012165 180 KIGG---YLPGVHYIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYE-Q--LYQQ------NGVK 246 (469)
Q Consensus 180 ~~g~---~~~~v~~~~~~~~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~-~--~l~~------~gV~ 246 (469)
+++. ..+|-. + ++...+ .....+++|+|||.|.+|+|++..++....++.... . .... .++.
T Consensus 160 ~~g~~~~~f~G~~----i-HS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~~~~~~~~ 234 (448)
T KOG1399|consen 160 IPGPGIESFKGKI----I-HSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEILGENLW 234 (448)
T ss_pred CCCCchhhcCCcc----e-ehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccceeecceE
Confidence 5552 233311 1 111111 223467999999999999999999877766554111 0 0111 1111
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcC
Q 012165 247 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 297 (469)
Q Consensus 247 ~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g 297 (469)
.+.. |..+. +++ .+.+.++....+|.+|+|||..-...+++..+
T Consensus 235 ~~~~--i~~~~--e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 235 QVPS--IKSFT--EDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred Eccc--ccccc--Ccc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 1111 33333 232 35566777889999999999998777776553
No 92
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.61 E-value=1.2e-14 Score=144.04 Aligned_cols=270 Identities=16% Similarity=0.209 Sum_probs=149.7
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165 49 NENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~-~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (469)
...++|+||||||||++||.+|. +.|+ +|+|+|+.+.+.. +.. +-.++...... .+ ...+.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~pgG----LvR-~GVaPdh~~~k-----~v-----~~~f~ 98 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPNPYG----LIR-YGVAPDHIHVK-----NT-----YKTFD 98 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCCCcc----EEE-EeCCCCCccHH-----HH-----HHHHH
Confidence 45679999999999999999876 4565 7999999987631 111 11111111000 00 01112
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCC--------CC-CCC----cCcEEEecCH
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--------KI-GGY----LPGVHYIRDV 194 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~--------~~-g~~----~~~v~~~~~~ 194 (469)
..+...+++++.+..+ +..++.++=. -.||.||+|||+.+..+|. +. |.+ ++|++..+++
T Consensus 99 ~~~~~~~v~f~gnv~V------G~Dvt~eeL~-~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~df 171 (506)
T PTZ00188 99 PVFLSPNYRFFGNVHV------GVDLKMEELR-NHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDL 171 (506)
T ss_pred HHHhhCCeEEEeeeEe------cCccCHHHHH-hcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheE
Confidence 2344567777654332 1122222212 3799999999998654331 00 333 4566543322
Q ss_pred -------HHHH---HHHHh---hhcCCeEEEEcCChHHHHHHHHHHhC--------------------CCe-Ee------
Q 012165 195 -------ADAD---ALISS---LEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KLD-TT------ 234 (469)
Q Consensus 195 -------~~~~---~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g~~-v~------ 234 (469)
.+.. ..... +...++++|||.|.+++++|..|.+- .++ |.
T Consensus 172 V~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRG 251 (506)
T PTZ00188 172 IYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRG 251 (506)
T ss_pred EEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecC
Confidence 1110 11111 11457899999999999999976421 111 11
Q ss_pred ---------eeHHHHH-------------------------------------------------------HcCcEEEcC
Q 012165 235 ---------RYEQLYQ-------------------------------------------------------QNGVKFVKG 250 (469)
Q Consensus 235 ---------~~~~~l~-------------------------------------------------------~~gV~~~~~ 250 (469)
.+.++.+ .+-+.+++.
T Consensus 252 p~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~ 331 (506)
T PTZ00188 252 FWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFY 331 (506)
T ss_pred HHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEcc
Confidence 0001110 123445556
Q ss_pred CeEEEEEeCCCCcEEEEEcC-----------CC--CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCC--CC
Q 012165 251 ASIKNLEAGSDGRVAAVKLE-----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT--RM 315 (469)
Q Consensus 251 ~~v~~i~~~~~~~v~~v~~~-----------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t--~~ 315 (469)
..+.+|.. .++++.++++. .| +.++||+|+-++|++... +.+ +..| ..+... ..+. ..
T Consensus 332 ~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~~g--~pFd-~~~~n~-~grv~~~~ 404 (506)
T PTZ00188 332 FEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FAE--NLYN-QSVQMF-KEDIGQHK 404 (506)
T ss_pred CCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--CCC--CCcc-ccCCCC-CCcccCCC
Confidence 66667763 24567777665 23 369999999999998642 222 2333 122221 1222 36
Q ss_pred CceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHH
Q 012165 316 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355 (469)
Q Consensus 316 ~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i 355 (469)
|++|++|-+-..|....|. ....|...+..+.+.+
T Consensus 405 ~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~ 439 (506)
T PTZ00188 405 FAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL 439 (506)
T ss_pred CCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence 9999999999888766544 3334666666555554
No 93
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.50 E-value=2.1e-12 Score=125.86 Aligned_cols=296 Identities=19% Similarity=0.260 Sum_probs=169.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCcccccCCCCCCCCCCCC----CccccCCC-
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYLFPLDKKPARLPG----FHTCVGSG- 121 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~- 121 (469)
+++|+|||||++|+..|.+|.+.--+...|.|+|+.+.+ +|+.-.-.+....+........|. |..+....
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 478999999999999999999975444559999998865 354211011000111111111111 11111000
Q ss_pred -------------------------CCCCCHhHHHHCC---cEEEeCCcEEEEeCC----CcEEEeCCCeEEEeccEEec
Q 012165 122 -------------------------GERQTPEWYKEKG---IEMIYQDPVTSIDIE----KQTLITNSGKLLKYGSLIVA 169 (469)
Q Consensus 122 -------------------------~~~~~~~~~~~~~---i~~~~~~~v~~id~~----~~~v~~~~g~~~~yd~lVlA 169 (469)
.......++++.. +.++. ++++++... ...++..+|....+|-+|+|
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla 159 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVLA 159 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence 0000111122222 55554 456666554 23677788998999999999
Q ss_pred cCCCCCcCCCCCCCCcCc-EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe--------------
Q 012165 170 TGCTASRFPEKIGGYLPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------- 234 (469)
Q Consensus 170 tG~~~~~~~~~~g~~~~~-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------- 234 (469)
||..+...+. -..++++ ..+..+.+....+ ..+....+|+|+|+|.+.++....|..+|.+-.
T Consensus 160 tgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~l-d~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrGl~~~~h 237 (474)
T COG4529 160 TGHSAPPADP-AARDLKGSPRLIADPYPANAL-DGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRGLVPRPH 237 (474)
T ss_pred ccCCCCCcch-hhhccCCCcceeccccCCccc-ccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccccccCCC
Confidence 9976542222 1122221 1133333333332 234556679999999999999999988765432
Q ss_pred --------------------------------------------------------------------------------
Q 012165 235 -------------------------------------------------------------------------------- 234 (469)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (469)
T Consensus 238 ~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~R 317 (474)
T COG4529 238 IPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRFR 317 (474)
T ss_pred CCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHhh
Confidence
Q ss_pred -------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CC-CEEeCCEEEEccCCccCCc-----hhh---hc
Q 012165 235 -------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG-STIDADTIVIGIGAKPTVS-----PFE---RV 296 (469)
Q Consensus 235 -------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g-~~i~~D~vi~a~G~~p~~~-----~~~---~~ 296 (469)
...+.+.+.-++++-+ ++..|...+++....+... +. +++++|.||.|+|..+... +|. +.
T Consensus 318 ~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~ 396 (474)
T COG4529 318 LAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGEN 396 (474)
T ss_pred hhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhC
Confidence 2233344444455544 5666665555532223222 22 5789999999999876532 333 33
Q ss_pred CCcc-c--CCCEEeCCCCCC------CCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165 297 GLNS-S--VGGIQVDGQFRT------RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 297 gl~~-~--~g~i~Vd~~~~t------~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
|+.. + ..|+.|+++.+. ..++.||+|..+.... +.+..+..-..|+..+|..++
T Consensus 397 Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f------~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 397 GLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTF------WEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred CccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCch------hhhccChHHHHHHHHHHHHHh
Confidence 4432 2 467888887664 4689999998886431 223445556667777777776
No 94
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.47 E-value=8.8e-13 Score=131.13 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=97.0
Q ss_pred EEEcCChHHHHHH-HHHH----hCCCeEe----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc
Q 012165 211 VVVGGGYIGMEVA-AAAV----GWKLDTT----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 269 (469)
Q Consensus 211 vVvG~G~~g~e~A-~~l~----~~g~~v~----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~ 269 (469)
.|++.+.+|+|.+ ..+. .+|.+++ .+.+.+++.|++++.++.|.+++.. ++.+..+..
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~ 297 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWT 297 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEe
Confidence 6788999999999 6554 4688887 5677788899999999999999864 455555555
Q ss_pred CCCC--EEeCCEEEEccCCccCCchh-----------------------------------hhcCCcccCCCEEeCCCCC
Q 012165 270 EDGS--TIDADTIVIGIGAKPTVSPF-----------------------------------ERVGLNSSVGGIQVDGQFR 312 (469)
Q Consensus 270 ~~g~--~i~~D~vi~a~G~~p~~~~~-----------------------------------~~~gl~~~~g~i~Vd~~~~ 312 (469)
.+|+ .+++|.+|+|+|..+...+. ..+|+..|.....+|...+
T Consensus 298 ~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~ 377 (422)
T PRK05329 298 RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGG 377 (422)
T ss_pred eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCCC
Confidence 5553 58999999999987664331 1223333333333344444
Q ss_pred CCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165 313 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 313 t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
+..+|+||+|++...+++..-.. --..|...|-+++++|..
T Consensus 378 ~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 378 PVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAE 418 (422)
T ss_pred eeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHH
Confidence 56899999999999876432111 112466777777777764
No 95
>PRK09897 hypothetical protein; Provisional
Probab=99.31 E-value=2e-10 Score=117.58 Aligned_cols=170 Identities=17% Similarity=0.148 Sum_probs=96.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCCCcccccCCC--CCCCCCCCCCccccC-----
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPL--DKKPARLPGFHTCVG----- 119 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~----- 119 (469)
|++|+|||||++|+++|..|.+.+. ..+|+|+|+....+ |....-++.++.+. ...+...+.|..+..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~ 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence 4689999999999999999998763 56899999976443 43211111111100 000000011111100
Q ss_pred ---------------CCCCCC-C----H-------hHHHHCC--cEEEeCCcEEEEeCCCc--EEEeCC-CeEEEeccEE
Q 012165 120 ---------------SGGERQ-T----P-------EWYKEKG--IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLI 167 (469)
Q Consensus 120 ---------------~~~~~~-~----~-------~~~~~~~--i~~~~~~~v~~id~~~~--~v~~~~-g~~~~yd~lV 167 (469)
....+. + . +.+...| +.++.+++|++++..+. .|++.+ +..+.+|+||
T Consensus 80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence 000000 0 1 1122344 67777789999987654 455544 4678999999
Q ss_pred eccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhC
Q 012165 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 229 (469)
Q Consensus 168 lAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~ 229 (469)
+|||..+...+. + .+ .++.+.++... .... .+.+|+|+|.|.++++++..|..+
T Consensus 160 LAtGh~~p~~~~--~--~~--~yi~~pw~~~~-~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 160 IATGHVWPDEEE--A--TR--TYFPSPWSGLM-EAKV-DACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred ECCCCCCCCCCh--h--hc--cccCCCCcchh-hcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence 999975422211 1 11 23333343221 1222 378999999999999999888755
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=111.09 Aligned_cols=120 Identities=27% Similarity=0.292 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCcccccCCCCCCCCCCCC--------
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTKGYLFPLDKKPARLPG-------- 113 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~-------- 113 (469)
++.+||+|||||+|||.||..+.++|. +|+|+|+.+.++ --|+.+.+... ......++|+
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k~GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPKLGRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCC---EEEEEecCccccceeEecCCCCcccccccc--HHHHHHhCCCcchHHHHH
Confidence 356899999999999999999999987 899999988542 11111111000 0000001110
Q ss_pred -----------------Cc---cccCCCCC---------CCCHhHHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEE
Q 012165 114 -----------------FH---TCVGSGGE---------RQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLK 162 (469)
Q Consensus 114 -----------------~~---~~~~~~~~---------~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~ 162 (469)
.. ...+..+. +.....+++.|++++++++|.+++.++ ..+.+.+|+++.
T Consensus 76 l~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~ 155 (408)
T COG2081 76 LARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVK 155 (408)
T ss_pred HHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEE
Confidence 00 00000001 111233567899999999999999885 688899998899
Q ss_pred eccEEeccCCC
Q 012165 163 YGSLIVATGCT 173 (469)
Q Consensus 163 yd~lVlAtG~~ 173 (469)
+|.||||||..
T Consensus 156 ~d~lilAtGG~ 166 (408)
T COG2081 156 CDSLILATGGK 166 (408)
T ss_pred ccEEEEecCCc
Confidence 99999999943
No 97
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.97 E-value=3.4e-08 Score=97.38 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=79.8
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhc--------CCcc----
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV--------GLNS---- 300 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~--------gl~~---- 300 (469)
.+.+.+++.|++++.+..|.++... ++++..+.+.++ ..+.+|.+|+|+|.--...++++. +++.
T Consensus 268 aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~ 346 (419)
T TIGR03378 268 ALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLP 346 (419)
T ss_pred HHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCCCc
Confidence 5677888999999999999998854 566666776776 479999999999987222332221 1111
Q ss_pred ----------------cCCCEEeCCCCCC-----CCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHH
Q 012165 301 ----------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355 (469)
Q Consensus 301 ----------------~~g~i~Vd~~~~t-----~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i 355 (469)
..-||.+|+++|. .++|+||+|-+....++..-.. . -..|+..|-++|+.|
T Consensus 347 ~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gc---G-~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 347 DRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGC---G-SGVAVSTALHAAEQI 418 (419)
T ss_pred chhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCC---C-chhHHHHHHHHHHhh
Confidence 1136889999983 3899999999998766432110 0 123677777777766
No 98
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.94 E-value=7.6e-09 Score=79.05 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=63.5
Q ss_pred ceeeecccccCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEeCCEEEEEEeecCChHHhHHHHHHHhCCCCCChh
Q 012165 368 YFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 444 (469)
Q Consensus 368 ~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (469)
||||+||+.. +|++|.+.. +.+.+++.+ .++..+|+++|+++|++. +|.+.++..++++++.+..++++
T Consensus 1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~ 72 (85)
T PF14759_consen 1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA 72 (85)
T ss_dssp EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence 7999999865 999998654 677888876 689999999999999995 89999999999999999999999
Q ss_pred hhcCCCcHHH
Q 012165 445 KLQQASSVEE 454 (469)
Q Consensus 445 ~~~~~~~~~~ 454 (469)
.+.++..-..
T Consensus 73 ~l~d~~~~L~ 82 (85)
T PF14759_consen 73 RLADPSVDLR 82 (85)
T ss_dssp HHHSTTSHHH
T ss_pred HhcCCCCChH
Confidence 9887755433
No 99
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.93 E-value=4.2e-09 Score=79.87 Aligned_cols=62 Identities=40% Similarity=0.705 Sum_probs=56.4
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 270 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~ 270 (469)
+++|||||++|+|+|..|++++.+++ .+.+.+++.||++++++.+++++.++++ +. |+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~ 78 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLE 78 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEe
Confidence 68999999999999999999999998 5678899999999999999999987777 66 8988
Q ss_pred CC
Q 012165 271 DG 272 (469)
Q Consensus 271 ~g 272 (469)
||
T Consensus 79 ~g 80 (80)
T PF00070_consen 79 DG 80 (80)
T ss_dssp TS
T ss_pred cC
Confidence 86
No 100
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.90 E-value=8.7e-09 Score=101.53 Aligned_cols=209 Identities=21% Similarity=0.276 Sum_probs=114.9
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCC-CCCCCCCCCccccCCCCCCCCH
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD-KKPARLPGFHTCVGSGGERQTP 127 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 127 (469)
++++||+|||||.-|+++|.+|+++.. +.+|+|+|++.....+...-..+.....- ..+..+ .............
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p-~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~sl---ka~l~~~g~~~~~ 76 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEP-DLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSL---KAKLCVAGNINEF 76 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCC-CceEEEEEccCccccccccCcccceeccccCCCcch---hhHHHHHHHHHHH
Confidence 356899999999999999999999984 67999999998875543322111111100 000000 0000000000113
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCc-CCCC----CCCCcCcEEEecCHHHHHHHHH
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-FPEK----IGGYLPGVHYIRDVADADALIS 202 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~-~~~~----~g~~~~~v~~~~~~~~~~~~~~ 202 (469)
++.+++++.+. ...++++|+|-.... +... ....++.+. . .|.+.+++
T Consensus 77 ~~~kq~~~~f~-----------------------~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~-~---ld~~~i~~ 129 (429)
T COG0579 77 AICKQLGIPFI-----------------------NCGKLSVATGEEEVERLEKLYERGKANGVFDLE-I---LDKEEIKE 129 (429)
T ss_pred HHHHHhCCccc-----------------------ccCeEEEEEChHHHHHHHHHHHHHhhCCCccee-e---cCHHHHHh
Confidence 33444443322 225778888754210 1000 000022122 2 23444443
Q ss_pred hhh---cCC--eEEEEcCChHHH-HHHHHHHhCCCeEeeeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE-E
Q 012165 203 SLE---KAK--KVVVVGGGYIGM-EVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-I 275 (469)
Q Consensus 203 ~~~---~~~--~vvVvG~G~~g~-e~A~~l~~~g~~v~~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~-i 275 (469)
... .+. -+.+=++|.+.. ++.. .+.+.+.++|++++++++|+.|+..++| +..+.+++|++ +
T Consensus 130 ~eP~l~~~~~aal~~p~~giV~~~~~t~----------~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~ 198 (429)
T COG0579 130 LEPLLNEGAVAALLVPSGGIVDPGELTR----------ALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETL 198 (429)
T ss_pred hCccccccceeeEEcCCCceEcHHHHHH----------HHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEE
Confidence 321 111 111222333221 1121 3445677889999999999999987665 55678888877 9
Q ss_pred eCCEEEEccCCccCCchhhhcCCcc
Q 012165 276 DADTIVIGIGAKPTVSPFERVGLNS 300 (469)
Q Consensus 276 ~~D~vi~a~G~~p~~~~~~~~gl~~ 300 (469)
+|+.||.|.|.... .+++..|+..
T Consensus 199 ~ak~Vin~AGl~Ad-~la~~~g~~~ 222 (429)
T COG0579 199 EAKFVINAAGLYAD-PLAQMAGIPE 222 (429)
T ss_pred EeeEEEECCchhHH-HHHHHhCCCc
Confidence 99999999998875 5666666655
No 101
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.88 E-value=1.5e-09 Score=107.80 Aligned_cols=120 Identities=28% Similarity=0.392 Sum_probs=60.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCcc------cccCCCCCCCCC----CC--
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK------GYLFPLDKKPAR----LP-- 112 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~~l~~------~~~~~~~~~~~~----~~-- 112 (469)
|||+|||||+|||.||..+++.|. +|+|+|+.+... --|..++. .|.......... +.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~---~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGA---RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence 689999999999999999999987 899999997542 00111111 011000000000 00
Q ss_pred ------------CCccccCCCC-----CC-------CCHhHHHHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEecc
Q 012165 113 ------------GFHTCVGSGG-----ER-------QTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGS 165 (469)
Q Consensus 113 ------------~~~~~~~~~~-----~~-------~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~ 165 (469)
+.......+. .. .+...+++.+++++.+++|.++..++. .|.++++.++.+|+
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 0000000000 00 012234677999999999999976443 57776778899999
Q ss_pred EEeccCCCC
Q 012165 166 LIVATGCTA 174 (469)
Q Consensus 166 lVlAtG~~~ 174 (469)
||||||...
T Consensus 158 vILAtGG~S 166 (409)
T PF03486_consen 158 VILATGGKS 166 (409)
T ss_dssp EEE----SS
T ss_pred EEEecCCCC
Confidence 999999764
No 102
>PRK06847 hypothetical protein; Provisional
Probab=98.78 E-value=3e-08 Score=98.73 Aligned_cols=123 Identities=19% Similarity=0.215 Sum_probs=74.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCcccc------------cC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKGY------------LF 102 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---------------~l~~~~------------~~ 102 (469)
+++||+|||||+||+++|..|++.|+ +|+|+|+.+...-... .+...+ ..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD 79 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence 46799999999999999999999988 7999998764311000 000000 00
Q ss_pred CCCCCCCCCC--CC--------ccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEecc
Q 012165 103 PLDKKPARLP--GF--------HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT 170 (469)
Q Consensus 103 ~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAt 170 (469)
........++ .+ ...........+.+.+.+.+++++.++++..++.... .+.+.+|+++.+|.||.|+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence 0000000000 00 0000000001122334457899999999999876544 5677788889999999999
Q ss_pred CCCCC
Q 012165 171 GCTAS 175 (469)
Q Consensus 171 G~~~~ 175 (469)
|....
T Consensus 160 G~~s~ 164 (375)
T PRK06847 160 GLYSK 164 (375)
T ss_pred CCCcc
Confidence 97653
No 103
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.78 E-value=2.8e-08 Score=97.23 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=43.4
Q ss_pred CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcC
Q 012165 302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 358 (469)
Q Consensus 302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~ 358 (469)
-|||.||.+.||+.|++||+|.|+.......++++ ..+.-++...|..+|++|.+.
T Consensus 341 mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLA-SNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 341 MGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred cccEEECCCCcccCcccEEeeeecccccccchhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence 38999999999999999999999986543333332 345567888899999999864
No 104
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.75 E-value=1.1e-07 Score=88.02 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=76.6
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE--EeCCEEEEccCCccCCchhh----------hcCCc---
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFE----------RVGLN--- 299 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~~~~----------~~gl~--- 299 (469)
.+...+++.|..+..+.+|.+.+- ..++|+.|.+.+... +.+|..|+|+|.--...+.. ++.+.
T Consensus 263 ~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~~~~ 341 (421)
T COG3075 263 QLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDILQTA 341 (421)
T ss_pred HHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcccccCc
Confidence 567788899999999999999884 478888999888754 56899999998643322110 01110
Q ss_pred ---------------ccCCCEEeCCCCCCC-----CCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165 300 ---------------SSVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 300 ---------------~~~g~i~Vd~~~~t~-----~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
...=|+.+|+++|.+ ..|+||+|.+.+..++..-... -..+...|-.+|+.|+.
T Consensus 342 dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcG----sGVaivta~~aa~qi~~ 415 (421)
T COG3075 342 DRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCG----SGVAIVTALHAAEQIAE 415 (421)
T ss_pred chhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCC----cchHHHHHHHHHHHHHH
Confidence 001267888888763 5799999999987664321100 11244555556666553
No 105
>PLN02463 lycopene beta cyclase
Probab=98.71 E-value=5.5e-08 Score=98.14 Aligned_cols=126 Identities=17% Similarity=0.241 Sum_probs=74.5
Q ss_pred cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-Cccccc--CCC-CCCCCCCCCCc------
Q 012165 46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPL-DKKPARLPGFH------ 115 (469)
Q Consensus 46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-l~~~~~--~~~-~~~~~~~~~~~------ 115 (469)
+.....+||+|||||+||+++|..|++.|+ +|+|+|+.+..++.+.. .+...+ .+. +.....++...
T Consensus 23 ~~~~~~~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~ 99 (447)
T PLN02463 23 PSKSRVVDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDG 99 (447)
T ss_pred CccccCceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCC
Confidence 344566899999999999999999999987 79999997654332110 000000 000 00000000000
Q ss_pred ---------c-ccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165 116 ---------T-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 116 ---------~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
. .....+.....+.+.+.+++++. .+|.+++..+. .|++++|.++++|.||.|+|....
T Consensus 100 ~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 100 KKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred CCccccCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0 00000001112223456899875 58888876543 678888988999999999998753
No 106
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.70 E-value=7.5e-08 Score=92.34 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=69.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCccc---cc----------------CCCCCCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTKG---YL----------------FPLDKKPAR 110 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~l~~~---~~----------------~~~~~~~~~ 110 (469)
+||+|||||+||+++|..|++.|. +|+|+|+.+....... .+... .+ .........
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 589999999999999999999987 7999999875432100 00000 00 000000000
Q ss_pred CC--C--CccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCC-CeEEEeccEEeccCCCC
Q 012165 111 LP--G--FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTA 174 (469)
Q Consensus 111 ~~--~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~-g~~~~yd~lVlAtG~~~ 174 (469)
.+ . ............+.+...+.+++++.++++..+..++. .+.+.+ +.++++|++|+|+|...
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 00 0 00000000111123334567899999999988765444 344443 45799999999999753
No 107
>PRK06834 hypothetical protein; Provisional
Probab=98.69 E-value=1.1e-07 Score=97.74 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=74.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCC-CCc-------------ccccCCCCCC------
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERP-ALT-------------KGYLFPLDKK------ 107 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~-~l~-------------~~~~~~~~~~------ 107 (469)
..+||+||||||+|+++|..|++.|+ +|+|+|+.+...+ .|. .++ ..+.......
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~ 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence 45899999999999999999999998 7999999865321 111 111 0000000000
Q ss_pred --CCCCCCCcc--ccC-----CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165 108 --PARLPGFHT--CVG-----SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 108 --~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
..++..+.. ..+ ......+.+.+++.+++++.+++++++..++. .+++.+|+++.+|+||.|.|.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 000000000 000 00000112334567999999999999876554 556667778999999999998754
No 108
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.68 E-value=1.4e-06 Score=89.67 Aligned_cols=55 Identities=31% Similarity=0.413 Sum_probs=38.5
Q ss_pred CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165 302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
-|||.||.+.||++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccCcccccc-hhHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999742111111111 23456677788888888764
No 109
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.68 E-value=1e-07 Score=95.44 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---Cccc----ccCCCCC-CCCCCCCCcc-cc-
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTKG----YLFPLDK-KPARLPGFHT-CV- 118 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~---l~~~----~~~~~~~-~~~~~~~~~~-~~- 118 (469)
++++||+||||||||++||+.|++.|+ +|+|+|+...+.+.... ++.. +...... ....+.+... ..
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~ 77 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPG 77 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCC---eEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecC
Confidence 357899999999999999999999996 89999998876543221 1110 0111000 0000000000 00
Q ss_pred ----------------CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EE-EeCCCeEEEeccEEeccCCCC
Q 012165 119 ----------------GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TL-ITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 119 ----------------~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v-~~~~g~~~~yd~lVlAtG~~~ 174 (469)
...+...+.+..++.|.+++.++++..+..++. .+ +..++.++.++++|.|+|...
T Consensus 78 ~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 78 EKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred CceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 000011122334567999999999998876653 22 223336799999999999764
No 110
>PRK10015 oxidoreductase; Provisional
Probab=98.67 E-value=8.1e-08 Score=97.08 Aligned_cols=123 Identities=17% Similarity=0.246 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCc----ccccCCC--CCCC-CCCCC-----
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALT----KGYLFPL--DKKP-ARLPG----- 113 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~l~----~~~~~~~--~~~~-~~~~~----- 113 (469)
..++||+||||||||++||..|++.|+ +|+|||+.+.+..... .++ ..++... .... .....
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 79 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGL---DVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISF 79 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEE
Confidence 346899999999999999999999988 7999999876432210 000 0000000 0000 00000
Q ss_pred ----------Ccc-------ccCCCCCC-C----CHhHHHHCCcEEEeCCcEEEEeCCCcEEE--eCCCeEEEeccEEec
Q 012165 114 ----------FHT-------CVGSGGER-Q----TPEWYKEKGIEMIYQDPVTSIDIEKQTLI--TNSGKLLKYGSLIVA 169 (469)
Q Consensus 114 ----------~~~-------~~~~~~~~-~----~~~~~~~~~i~~~~~~~v~~id~~~~~v~--~~~g~~~~yd~lVlA 169 (469)
+.. ..+....+ . +.+..++.|++++.+++|+.+..++..+. ..++.++.+|.+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~A 159 (429)
T PRK10015 80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA 159 (429)
T ss_pred EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEc
Confidence 000 00000000 1 12334567999999989998876544332 234567999999999
Q ss_pred cCCCC
Q 012165 170 TGCTA 174 (469)
Q Consensus 170 tG~~~ 174 (469)
+|...
T Consensus 160 dG~~s 164 (429)
T PRK10015 160 DGVNS 164 (429)
T ss_pred cCcch
Confidence 99753
No 111
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.66 E-value=1.1e-07 Score=96.20 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCc----ccccCC--CCCCCCCCC-----CC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALT----KGYLFP--LDKKPARLP-----GF 114 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~l~----~~~~~~--~~~~~~~~~-----~~ 114 (469)
..++||+||||||||++||..|++.|+ +|+|+|+.+.+..... .++ ..++.. ......+.. .+
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~ 79 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAF 79 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEE
Confidence 346999999999999999999999998 7999999876432110 000 000000 000000000 00
Q ss_pred ---------ccccC---C----CC-------CCCCHhHHHHCCcEEEeCCcEEEEeCCCcEE--EeCCCeEEEeccEEec
Q 012165 115 ---------HTCVG---S----GG-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVA 169 (469)
Q Consensus 115 ---------~~~~~---~----~~-------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v--~~~~g~~~~yd~lVlA 169 (469)
..... . .. ...+.+..++.|++++.+++|+.+..++..+ ...++.++.+|.||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A 159 (428)
T PRK10157 80 MTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILA 159 (428)
T ss_pred EcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEE
Confidence 00000 0 00 0001223356799999999999986544332 3446678999999999
Q ss_pred cCCCC
Q 012165 170 TGCTA 174 (469)
Q Consensus 170 tG~~~ 174 (469)
+|...
T Consensus 160 ~G~~s 164 (428)
T PRK10157 160 DGVNS 164 (428)
T ss_pred eCCCH
Confidence 99754
No 112
>PRK07190 hypothetical protein; Provisional
Probab=98.64 E-value=1.4e-07 Score=96.81 Aligned_cols=123 Identities=21% Similarity=0.213 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC--------------CCcccccC-----------
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP--------------ALTKGYLF----------- 102 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~--------------~l~~~~~~----------- 102 (469)
...+||+||||||+|+++|..|+++|. +|+|||+.+... ..+. .+...+..
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~ 79 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVW 79 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEe
Confidence 455899999999999999999999987 799999987531 1110 00000000
Q ss_pred CCCCCC-------CCCCCC-c---cccCC-CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEe
Q 012165 103 PLDKKP-------ARLPGF-H---TCVGS-GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV 168 (469)
Q Consensus 103 ~~~~~~-------~~~~~~-~---~~~~~-~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVl 168 (469)
...... ..++.. . ..... .....+.+.+++.|++++.+++|+++..+.. .+++.+|+++.+++||.
T Consensus 80 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVg 159 (487)
T PRK07190 80 ANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIG 159 (487)
T ss_pred cCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEE
Confidence 000000 000000 0 00000 0000112345567999999999999876543 45667788899999999
Q ss_pred ccCCCC
Q 012165 169 ATGCTA 174 (469)
Q Consensus 169 AtG~~~ 174 (469)
|+|.+.
T Consensus 160 ADG~~S 165 (487)
T PRK07190 160 ADGSRS 165 (487)
T ss_pred CCCCCH
Confidence 999864
No 113
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.62 E-value=5.3e-08 Score=91.06 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCC--------------CCCCCC-CCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL--------------DKKPAR-LPG 113 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~--------------~~~~~~-~~~ 113 (469)
...+||+|||||+||++||.+|++.|+ +|+|+|+.+.+.... ...+.+.+. .....+ -++
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g 97 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG 97 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCc
Confidence 456899999999999999999999987 799999987643210 000000000 000000 000
Q ss_pred CccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc-EE---EeC-----------CCeEEEeccEEeccCCC
Q 012165 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TL---ITN-----------SGKLLKYGSLIVATGCT 173 (469)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~-~v---~~~-----------~g~~~~yd~lVlAtG~~ 173 (469)
............+.+...+.|++++.+++|.++..++. .+ .+. +...+.++.+|+|||..
T Consensus 98 ~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 98 LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 00000000111122334667999999988888764322 22 111 22468999999999965
No 114
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.60 E-value=5.3e-07 Score=77.83 Aligned_cols=117 Identities=16% Similarity=0.337 Sum_probs=66.0
Q ss_pred EEEcCcHHHHHHHHHHHHcC--CCCCcEEEEcCCCCC---CCCCCCCcccccC-CCCC---CCCCC-CCCccccCCCC--
Q 012165 55 VIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAYA---PYERPALTKGYLF-PLDK---KPARL-PGFHTCVGSGG-- 122 (469)
Q Consensus 55 vIIGgG~AGl~aA~~L~~~g--~~~~~V~vie~~~~~---~~~~~~l~~~~~~-~~~~---~~~~~-~~~~~~~~~~~-- 122 (469)
+|||+|++|++++.+|.+.. .+..+|+|+|+.+.. +|........++. +... ...+. +.|..+.....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 59999999999999999984 346799999996543 2332111111111 0000 01111 12222111111
Q ss_pred --------CCCCHh----H--------HHH--CC--cEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCC
Q 012165 123 --------ERQTPE----W--------YKE--KG--IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC 172 (469)
Q Consensus 123 --------~~~~~~----~--------~~~--~~--i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~ 172 (469)
...+.. + .+. .+ +.++. .+|+.++..+. .|.+.+|..+.||+||||||.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~-~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVR-AEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEe-eEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 001111 1 111 23 33444 58888887654 678899999999999999995
No 115
>PRK06184 hypothetical protein; Provisional
Probab=98.60 E-value=2.3e-07 Score=96.09 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=72.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CC--------------CCCccccc-----------CC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER--------------PALTKGYL-----------FP 103 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~-~~--------------~~l~~~~~-----------~~ 103 (469)
+++||+||||||+|+++|..|+++|+ +|+|+|+.+.+.- .+ -.+...+. +.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi---~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence 46899999999999999999999998 7999999764310 00 00000000 00
Q ss_pred CCCCCC--CCC-------C--Cc---cccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEe---CCCeEEEec
Q 012165 104 LDKKPA--RLP-------G--FH---TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYG 164 (469)
Q Consensus 104 ~~~~~~--~~~-------~--~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~---~~g~~~~yd 164 (469)
...... .+. . +. ..........+.+.+.+.+++++.++++++++.+.. ++++ .+++++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~ 158 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR 158 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence 000000 000 0 00 000000001122334566899999999999976544 3444 556789999
Q ss_pred cEEeccCCCC
Q 012165 165 SLIVATGCTA 174 (469)
Q Consensus 165 ~lVlAtG~~~ 174 (469)
+||.|+|.+.
T Consensus 159 ~vVgADG~~S 168 (502)
T PRK06184 159 YLVGADGGRS 168 (502)
T ss_pred EEEECCCCch
Confidence 9999999774
No 116
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.59 E-value=2.8e-07 Score=90.81 Aligned_cols=61 Identities=30% Similarity=0.510 Sum_probs=46.2
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 298 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 298 (469)
.+.+.+++.|++++.+++|+++..+ ++.+.+|.+++|+ +.+|.||+|+|.... .++..++.
T Consensus 152 ~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 152 ALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred hhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 5566778889999999999999864 5667679999997 999999999998654 35555544
No 117
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.58 E-value=2e-07 Score=93.38 Aligned_cols=124 Identities=18% Similarity=0.316 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--CC-----Ccc---ccc-----CCCC-C-CCCC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER--PA-----LTK---GYL-----FPLD-K-KPAR 110 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~--~~-----l~~---~~~-----~~~~-~-~~~~ 110 (469)
+..++||+|||||++|+++|..|+++|+ +|+|+|+.+...+.. +. ++. ..+ ...- . ....
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~---~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALADAGL---SVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP 79 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCC---EEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence 3556899999999999999999999998 799999976432210 00 100 000 0000 0 0000
Q ss_pred CCCCc----------cc----cCCC----------CCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEec
Q 012165 111 LPGFH----------TC----VGSG----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (469)
Q Consensus 111 ~~~~~----------~~----~~~~----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd 164 (469)
+..+. .. .+.. ....+.+.+++.+++++.+++|+++..++. ++++++|+++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 159 (392)
T PRK08773 80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAA 159 (392)
T ss_pred ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeC
Confidence 00000 00 0000 000011224557999999999999876544 5667788889999
Q ss_pred cEEeccCCCC
Q 012165 165 SLIVATGCTA 174 (469)
Q Consensus 165 ~lVlAtG~~~ 174 (469)
.||.|+|...
T Consensus 160 ~vV~AdG~~S 169 (392)
T PRK08773 160 LAIAADGAAS 169 (392)
T ss_pred EEEEecCCCc
Confidence 9999999875
No 118
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.57 E-value=1.6e-07 Score=87.49 Aligned_cols=122 Identities=14% Similarity=0.161 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC----CCcc--------cccCCCCCCCCCC-CCCc
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP----ALTK--------GYLFPLDKKPARL-PGFH 115 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~----~l~~--------~~~~~~~~~~~~~-~~~~ 115 (469)
...+||+|||||+||++||..|++.|. +|+|+|+...++.... .++. .++.......... .++.
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~---~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 95 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGL---KVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYV 95 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceE
Confidence 346899999999999999999999987 7999999876532100 0000 0000000000000 0000
Q ss_pred cccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--E---EEeC-----------CCeEEEeccEEeccCCC
Q 012165 116 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T---LITN-----------SGKLLKYGSLIVATGCT 173 (469)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~---v~~~-----------~g~~~~yd~lVlAtG~~ 173 (469)
..........+.+...+.+++++.++.+..+..++. . |.+. +...+.++.+|.|||..
T Consensus 96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 000000011122334567999999988988765332 2 2222 12468899999999954
No 119
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.57 E-value=2.6e-07 Score=92.99 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=73.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CC-CC-------------ccccc-----------C
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RP-AL-------------TKGYL-----------F 102 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~-~l-------------~~~~~-----------~ 102 (469)
++||+|||||++|+++|..|+++|. ..+|+|+|+.+..... +. .+ ...+. .
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~-g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAP-HLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT 79 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCC-CCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence 4799999999999999999999862 3489999997642110 00 00 00000 0
Q ss_pred C-CCCCCCC--CCCCccc--cCC---------CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccE
Q 012165 103 P-LDKKPAR--LPGFHTC--VGS---------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL 166 (469)
Q Consensus 103 ~-~~~~~~~--~~~~~~~--~~~---------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~l 166 (469)
. ....... ...+... .+. .....+.+.+.+.+++++.+++|++++.+.. .+++.+|.++.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 159 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL 159 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence 0 0000000 0000000 000 0011122334556999999999999976554 466778888999999
Q ss_pred EeccCCCCC
Q 012165 167 IVATGCTAS 175 (469)
Q Consensus 167 VlAtG~~~~ 175 (469)
|.|+|....
T Consensus 160 I~AdG~~S~ 168 (403)
T PRK07333 160 VAADGARSK 168 (403)
T ss_pred EEcCCCChH
Confidence 999997643
No 120
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.56 E-value=2.5e-07 Score=97.07 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=62.2
Q ss_pred hhcCCeEEEEcCCh--HHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEc
Q 012165 204 LEKAKKVVVVGGGY--IGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVK 249 (469)
Q Consensus 204 ~~~~~~vvVvG~G~--~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~ 249 (469)
....+++.|+|++. ++.+++..+...+..+. .+.+.+++.|++++.
T Consensus 154 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~ 233 (574)
T PRK12842 154 RPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILT 233 (574)
T ss_pred cCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEe
Confidence 34567888999988 78888877765444332 245567789999999
Q ss_pred CCeEEEEEeCCCCcEEEEEcCC--CC-EEeCC-EEEEccCCccC
Q 012165 250 GASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT 289 (469)
Q Consensus 250 ~~~v~~i~~~~~~~v~~v~~~~--g~-~i~~D-~vi~a~G~~p~ 289 (469)
++.++++..+ ++++.+|...+ ++ .+.++ .||+|+|..++
T Consensus 234 ~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 234 GTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred CCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 9999999854 67777776643 33 47786 79999997764
No 121
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.54 E-value=1.4e-06 Score=89.97 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=38.6
Q ss_pred CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165 302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
-|||.||.+.+|++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHh
Confidence 38899999999999999999999852111111111 22456778888888888754
No 122
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.52 E-value=2.9e-07 Score=92.14 Aligned_cols=118 Identities=15% Similarity=0.176 Sum_probs=69.0
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCcccccC--CCC-CCCCCCCCCc--------c----
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYLF--PLD-KKPARLPGFH--------T---- 116 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~l~~~~~~--~~~-~~~~~~~~~~--------~---- 116 (469)
||+|||||+||+++|..|++.|+ +|+|||+.+..+..+. .+....+. ... .....+.+.. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 79999999999999999999887 7999999875443211 00000000 000 0000011100 0
Q ss_pred ----ccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC-C--cEEEeCCCeEEEeccEEeccCCCC
Q 012165 117 ----CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 117 ----~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~-~--~~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
.....+.....+.+.+.+++++. .+|..+..+ . ..|++++|.+++++.||.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00000001112233556888865 578888655 2 356777887899999999999875
No 123
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.51 E-value=1e-05 Score=84.30 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=38.2
Q ss_pred CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165 302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
-|||.||.+.||++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999742111111111 23455677778888887754
No 124
>PRK09126 hypothetical protein; Provisional
Probab=98.50 E-value=7.5e-07 Score=89.29 Aligned_cols=123 Identities=22% Similarity=0.324 Sum_probs=72.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-------Ccc---cccC--CC-----CCCCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-------LTK---GYLF--PL-----DKKPARLP 112 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-------l~~---~~~~--~~-----~~~~~~~~ 112 (469)
+++||+|||||++|+++|..|+++|+ +|+|+|+.+......+. ++. ..+. +. ........
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~ 78 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLR 78 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccc
Confidence 46899999999999999999999998 79999998752110000 000 0000 00 00000000
Q ss_pred CC----------cccc----CCCCC------CCCH----hHH-HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEecc
Q 012165 113 GF----------HTCV----GSGGE------RQTP----EWY-KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS 165 (469)
Q Consensus 113 ~~----------~~~~----~~~~~------~~~~----~~~-~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~ 165 (469)
.. .... ..... .... +.+ +..+++++.+++|+.++.+.. .|++++|+++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~ 158 (392)
T PRK09126 79 DAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARL 158 (392)
T ss_pred eEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCE
Confidence 00 0000 00000 0001 111 235899999999999876543 56777888899999
Q ss_pred EEeccCCCCC
Q 012165 166 LIVATGCTAS 175 (469)
Q Consensus 166 lVlAtG~~~~ 175 (469)
||.|.|....
T Consensus 159 vI~AdG~~S~ 168 (392)
T PRK09126 159 LVAADSRFSA 168 (392)
T ss_pred EEEeCCCCch
Confidence 9999997653
No 125
>PRK07045 putative monooxygenase; Reviewed
Probab=98.50 E-value=2.7e-06 Score=85.21 Aligned_cols=48 Identities=29% Similarity=0.441 Sum_probs=41.3
Q ss_pred HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 242 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
..|++++++++++.++.++++.+..|++++|+++.+|+||-|.|....
T Consensus 119 ~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 119 LPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred CCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 468999999999999876666655788899999999999999998764
No 126
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.49 E-value=5.1e-07 Score=90.46 Aligned_cols=123 Identities=18% Similarity=0.269 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCc-------c--cccCCCC----CC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALT-------K--GYLFPLD----KK 107 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--------~l~-------~--~~~~~~~----~~ 107 (469)
.+.+||+|||||++|+++|..|++.|+ +|+|+|+.+...+... .++ + +++.... ..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHP 79 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcc
Confidence 455899999999999999999999987 7999998763222100 000 0 0000000 00
Q ss_pred CCC-----CCC--Cccc---cC-CC--C--C-----CCCHhHHHHC-CcEEEeCCcEEEEeCCCc--EEEeCCCeEEEec
Q 012165 108 PAR-----LPG--FHTC---VG-SG--G--E-----RQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (469)
Q Consensus 108 ~~~-----~~~--~~~~---~~-~~--~--~-----~~~~~~~~~~-~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd 164 (469)
... ... .... .. .. . . ..+.+.+... +++++.+++++.+..+.. .|.+++++++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~ 159 (391)
T PRK08020 80 YRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK 159 (391)
T ss_pred cceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence 000 000 0000 00 00 0 0 0011112333 899998899999865443 5667788889999
Q ss_pred cEEeccCCCC
Q 012165 165 SLIVATGCTA 174 (469)
Q Consensus 165 ~lVlAtG~~~ 174 (469)
.||.|.|...
T Consensus 160 ~vI~AdG~~S 169 (391)
T PRK08020 160 LVIGADGANS 169 (391)
T ss_pred EEEEeCCCCc
Confidence 9999999764
No 127
>PRK07236 hypothetical protein; Provisional
Probab=98.49 E-value=3.4e-07 Score=91.56 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--Cccc---ccC--CCC-CCCCCCC--CCc--
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YLF--PLD-KKPARLP--GFH-- 115 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~--l~~~---~~~--~~~-~~~~~~~--~~~-- 115 (469)
+++.+|+|||||++|+++|..|++.|+ +|+|+|+.+.....+. . +... .+. +.. ......+ ...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 80 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYL 80 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEE
Confidence 556899999999999999999999998 7999999864311110 0 1100 000 000 0000000 000
Q ss_pred cccCC-----CC---C---CCCHhHHH-H-CCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165 116 TCVGS-----GG---E---RQTPEWYK-E-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 116 ~~~~~-----~~---~---~~~~~~~~-~-~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
...+. .. . ..+...+. . .+++++.+++|+++..+.. ++++.+|+++.+|.||.|-|...
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 00000 00 0 00111111 1 2467889999999976554 56778898999999999999654
No 128
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.49 E-value=1e-06 Score=88.12 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=35.0
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
|++..+||+|||||++|+++|..|++.|+ +|+|+|+.+..
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~~ 42 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPPY 42 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCCC
Confidence 44566899999999999999999999987 79999998653
No 129
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.48 E-value=2.5e-06 Score=85.31 Aligned_cols=51 Identities=31% Similarity=0.397 Sum_probs=39.7
Q ss_pred HHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcC-CCCEEeCCEEEEccCCccC
Q 012165 237 EQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 237 ~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.+. +|+++.+++|+.++.++ +.+. ++++ ||+++.||+||-|=|....
T Consensus 111 ~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 111 LEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred HHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCCchH
Confidence 3445544 49999999999999654 4443 7777 9999999999999997653
No 130
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.48 E-value=1e-06 Score=89.85 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHhCCCe-----------Ee----------eeHHHHHHcCcEEEcCCeEEEEEeC-CC--CcEEEEEcC-
Q 012165 216 GYIGMEVAAAAVGWKLD-----------TT----------RYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAVKLE- 270 (469)
Q Consensus 216 G~~g~e~A~~l~~~g~~-----------v~----------~~~~~l~~~gV~~~~~~~v~~i~~~-~~--~~v~~v~~~- 270 (469)
=.++.|+..++.+.-.+ .+ -+.+.++++||+|+++++|+++..+ ++ +++.++...
T Consensus 191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~ 270 (576)
T PRK13977 191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR 270 (576)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe
Confidence 35788888888654111 11 5678899999999999999999864 23 668888775
Q ss_pred CCC-----EEeCCEEEEccCCcc
Q 012165 271 DGS-----TIDADTIVIGIGAKP 288 (469)
Q Consensus 271 ~g~-----~i~~D~vi~a~G~~p 288 (469)
+|. ..+.|.||+++|.-.
T Consensus 271 ~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 271 NGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred CCceeEEEecCCCEEEEeCCcCc
Confidence 332 357899999999643
No 131
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.47 E-value=5.9e-07 Score=91.09 Aligned_cols=98 Identities=21% Similarity=0.322 Sum_probs=74.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++|+|||||++|+.+|..|++.|. +|+++++.+... . +.+. ..+ .....+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~-~-~~~~-----------~~~-----------~~~~~~~l 189 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERIL-N-KLFD-----------EEM-----------NQIVEEEL 189 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccC-c-cccC-----------HHH-----------HHHHHHHH
Confidence 4799999999999999999999876 799999776420 0 0000 000 11235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
++.||+++.++++.+++.++..+.+.+|++++||.||+|+|.+|.
T Consensus 190 ~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 190 KKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 889999999999999988766556678888999999999998875
No 132
>PRK08244 hypothetical protein; Provisional
Probab=98.47 E-value=6.4e-07 Score=92.58 Aligned_cols=121 Identities=17% Similarity=0.325 Sum_probs=70.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCC--------------CCCcccccCCCC----------
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YER--------------PALTKGYLFPLD---------- 105 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~--------------~~l~~~~~~~~~---------- 105 (469)
++||+||||||+|+++|..|++.|+ +|+|||+.+... ..+ ..+...+.....
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV---KTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 4799999999999999999999998 799999976531 110 001000000000
Q ss_pred CCCCCCCCCcc------ccC-CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeC--CC-eEEEeccEEeccCCC
Q 012165 106 KKPARLPGFHT------CVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG-KLLKYGSLIVATGCT 173 (469)
Q Consensus 106 ~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~--~g-~~~~yd~lVlAtG~~ 173 (469)
....++..... ... ......+.+.+++.+++++.+++++++..++. ++++. +| +++++|+||.|.|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 00000000000 000 00001112334567999999999999876554 33443 45 479999999999976
Q ss_pred C
Q 012165 174 A 174 (469)
Q Consensus 174 ~ 174 (469)
.
T Consensus 159 S 159 (493)
T PRK08244 159 S 159 (493)
T ss_pred h
Confidence 5
No 133
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.46 E-value=5.8e-07 Score=91.46 Aligned_cols=98 Identities=15% Similarity=0.292 Sum_probs=73.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++|+|||||+.|+.+|..|++.|. +|+++++.+.+. ..... .+ .....+.
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l-----------~~~~~---~~-----------~~~~~~~ 207 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGS---KVTVLDAASTIL-----------PREEP---SV-----------AALAKQY 207 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCccC-----------CCCCH---HH-----------HHHHHHH
Confidence 35689999999999999999999876 799999876431 00000 00 0123466
Q ss_pred HHHCCcEEEeCCcEEEEeCCCcEE-EeCCCeEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQTL-ITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v-~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
+++.|++++.++++.+++.++..+ ...++++++||.+++|+|.+|.
T Consensus 208 l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 208 MEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence 788999999999999998765433 3345678999999999999886
No 134
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.46 E-value=2.1e-07 Score=70.45 Aligned_cols=78 Identities=18% Similarity=0.376 Sum_probs=58.4
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (469)
+++|||||+.|+.+|..|++.|. +|+|++..+.+. +.+.. .. .....+++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~---~~~~~--------~~--------------~~~~~~~l~~ 52 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL---PGFDP--------DA--------------AKILEEYLRK 52 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS---TTSSH--------HH--------------HHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh---hhcCH--------HH--------------HHHHHHHHHH
Confidence 58999999999999999999886 899999887642 11110 00 1234567889
Q ss_pred CCcEEEeCCcEEEEeCCCcE--EEeCCC
Q 012165 133 KGIEMIYQDPVTSIDIEKQT--LITNSG 158 (469)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~~--v~~~~g 158 (469)
.|+++++++.+.+++.+... |+++||
T Consensus 53 ~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 53 RGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 99999999999999876543 666654
No 135
>PLN02697 lycopene epsilon cyclase
Probab=98.44 E-value=6e-07 Score=92.17 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=68.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-Cccccc--CCCCC-CCCCCCCCccc--------
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPLDK-KPARLPGFHTC-------- 117 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-l~~~~~--~~~~~-~~~~~~~~~~~-------- 117 (469)
..+||+|||||+||+++|..|++.|+ +|++||+... +.... ++...+ .+... ....+++....
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~p--~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~ 181 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDLP--FTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM 181 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC---cEEEecCccc--CCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence 46899999999999999999999987 7999997532 21110 100000 00000 00000000000
Q ss_pred cCCCC--------CCCCHhHHHHCCcEEEeCCcEEEEeCCCc--E-EEeCCCeEEEeccEEeccCCCC
Q 012165 118 VGSGG--------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 118 ~~~~~--------~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~-v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
..... ...+.+.+.+.++++ .+++|+.+..+.. . +++.+|.++.++.||.|+|...
T Consensus 182 ~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 182 IGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 00000 011122234568988 4578988875433 2 4567788899999999999875
No 136
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.44 E-value=1.8e-06 Score=82.43 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=47.2
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---------------CCEEeCCEEEEccCCccCCc--hhhhcC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPTVS--PFERVG 297 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---------------g~~i~~D~vi~a~G~~p~~~--~~~~~g 297 (469)
++-+..++.||+++.+...+++.-++++.|.+|.++| |-++.+..-|+|-|-+-... .++..+
T Consensus 188 wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~ 267 (621)
T KOG2415|consen 188 WLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFD 267 (621)
T ss_pred HHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhC
Confidence 3445678889999999988998888888888887654 23678889999998876532 344444
Q ss_pred C
Q 012165 298 L 298 (469)
Q Consensus 298 l 298 (469)
|
T Consensus 268 L 268 (621)
T KOG2415|consen 268 L 268 (621)
T ss_pred c
Confidence 4
No 137
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.43 E-value=7.3e-07 Score=89.26 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=33.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
+++||+|||||+||+++|..|++.|+ +|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGL---RVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCc
Confidence 35799999999999999999999987 79999998764
No 138
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.41 E-value=1.5e-06 Score=87.18 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=44.1
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 298 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 298 (469)
.+.+.+++.|++++.++.+.+++.. ++.+ .|.+.+| ++.+|.||+|+|.... .+++.+++
T Consensus 154 aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~ 213 (393)
T PRK11728 154 AMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL 213 (393)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence 3456677889999999999999854 3333 5677776 7999999999998754 34444443
No 139
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.41 E-value=2.1e-06 Score=85.79 Aligned_cols=122 Identities=13% Similarity=0.244 Sum_probs=71.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCcc---ccc-----CCC-----CCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALTK---GYL-----FPL-----DKKPA 109 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--------~l~~---~~~-----~~~-----~~~~~ 109 (469)
.+||+|||||++|+++|..|++.|+ +|+|+|+.+...+... .++. ..+ ... .....
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR---SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 4799999999999999999999998 7999998752222110 1100 000 000 00000
Q ss_pred ------CCCCCccccCCC---------CCCC-CH----hHHHH-CCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccE
Q 012165 110 ------RLPGFHTCVGSG---------GERQ-TP----EWYKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSL 166 (469)
Q Consensus 110 ------~~~~~~~~~~~~---------~~~~-~~----~~~~~-~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~l 166 (469)
............ .... .. +.+.. .+++++.++++.+++.+. .+|++.+|.++++|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv 159 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV 159 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence 000000000000 0000 00 11122 478999999999986544 3678889999999999
Q ss_pred EeccCCCCC
Q 012165 167 IVATGCTAS 175 (469)
Q Consensus 167 VlAtG~~~~ 175 (469)
|.|+|....
T Consensus 160 IgADG~~S~ 168 (384)
T PRK08849 160 IGADGANSQ 168 (384)
T ss_pred EEecCCCch
Confidence 999997643
No 140
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.41 E-value=6.6e-07 Score=90.13 Aligned_cols=121 Identities=16% Similarity=0.287 Sum_probs=71.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC--C------CC-C-CCCcc---ccc-----CCC-CC-CCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA--P------YE-R-PALTK---GYL-----FPL-DK-KPAR 110 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~--~------~~-~-~~l~~---~~~-----~~~-~~-~~~~ 110 (469)
.+||+|||||++|+++|..|++.|+ +|+|+|+.+.. + +. + ..++. ..+ .+. .. ....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 78 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGL---EVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP 78 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCC---EEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence 4799999999999999999999988 79999987621 0 00 0 00000 000 000 00 0000
Q ss_pred CCCCcc----------c-c---CCCC----------CCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEec
Q 012165 111 LPGFHT----------C-V---GSGG----------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (469)
Q Consensus 111 ~~~~~~----------~-~---~~~~----------~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd 164 (469)
+..+.. . . .... ...+.+.+++.+++++.++++.+++.+.. +|++.+|+++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 000000 0 0 0000 00011223456899999999999875543 5677888889999
Q ss_pred cEEeccCCCC
Q 012165 165 SLIVATGCTA 174 (469)
Q Consensus 165 ~lVlAtG~~~ 174 (469)
.||.|.|...
T Consensus 159 ~vVgAdG~~S 168 (405)
T PRK05714 159 LVVAADGANS 168 (405)
T ss_pred EEEEecCCCc
Confidence 9999999764
No 141
>PRK08013 oxidoreductase; Provisional
Probab=98.40 E-value=1.5e-06 Score=87.35 Aligned_cols=122 Identities=15% Similarity=0.172 Sum_probs=71.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------C-----C---------CCcccccCCCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------R-----P---------ALTKGYLFPLDKKP 108 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-------~-----~---------~l~~~~~~~~~~~~ 108 (469)
+.+||+||||||+|+++|..|++.|+ +|+|+|+.+...-. | | .+...+........
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~ 78 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCY 78 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccc
Confidence 35899999999999999999999998 79999997653210 0 0 00000000000000
Q ss_pred CC--------CCCCccc---cCCCC---CC---C----CHhHHHH-CCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEec
Q 012165 109 AR--------LPGFHTC---VGSGG---ER---Q----TPEWYKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYG 164 (469)
Q Consensus 109 ~~--------~~~~~~~---~~~~~---~~---~----~~~~~~~-~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd 164 (469)
.. ....... .+... .. . +.+...+ .+++++.++++++++.+. .++++.+|+++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 158 (400)
T PRK08013 79 HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR 158 (400)
T ss_pred cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence 00 0000000 00000 00 0 1111233 379999999999986544 35677888899999
Q ss_pred cEEeccCCCC
Q 012165 165 SLIVATGCTA 174 (469)
Q Consensus 165 ~lVlAtG~~~ 174 (469)
.||-|.|...
T Consensus 159 lvVgADG~~S 168 (400)
T PRK08013 159 LVVGADGANS 168 (400)
T ss_pred EEEEeCCCCc
Confidence 9999999764
No 142
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.39 E-value=4.4e-07 Score=92.16 Aligned_cols=54 Identities=31% Similarity=0.594 Sum_probs=42.4
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+..++.||+++.++ |.++..++++.+..|++++|+++.+|++|=|+|++..
T Consensus 159 ~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 159 FLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 55666778899999884 7787777788898999999999999999999999763
No 143
>PRK05868 hypothetical protein; Validated
Probab=98.38 E-value=1.5e-06 Score=86.36 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=71.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---------------CCCCcccc-----------cC-C
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---------------RPALTKGY-----------LF-P 103 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---------------~~~l~~~~-----------~~-~ 103 (469)
|+||+|||||++|+++|..|++.|+ +|+|+|+.+...-. +..+...+ +. .
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 77 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR 77 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC
Confidence 4689999999999999999999998 79999988653210 00010000 00 0
Q ss_pred CCCCCCCCCC---CccccCC-CCCC---CCHhHHH---HCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccC
Q 012165 104 LDKKPARLPG---FHTCVGS-GGER---QTPEWYK---EKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG 171 (469)
Q Consensus 104 ~~~~~~~~~~---~~~~~~~-~~~~---~~~~~~~---~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG 171 (469)
.......... ....... .... .+.+.+. ..+++++++++|++++.+.. +|++.+|+++++|.||-|-|
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 78 DGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 0000000000 0000000 0000 0111121 35789999999999875443 57778998999999999999
Q ss_pred CCC
Q 012165 172 CTA 174 (469)
Q Consensus 172 ~~~ 174 (469)
.+.
T Consensus 158 ~~S 160 (372)
T PRK05868 158 LHS 160 (372)
T ss_pred CCc
Confidence 664
No 144
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.38 E-value=1.3e-06 Score=86.77 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=69.2
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCC-----CCCCCCCCc-------cccCC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-----KPARLPGFH-------TCVGS 120 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~-------~~~~~ 120 (469)
||+|||||+||+++|..|++... +.+|+|||+++..++....... ++..... ....++... .....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW~-~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~ 78 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTWC-FWEKDLGPLDSLVSHRWSGWRVYFPDGSRILID 78 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCcccc-cccccccchHHHHheecCceEEEeCCCceEEcc
Confidence 79999999999999999955443 5589999998776332211110 1110000 001111110 00000
Q ss_pred --CCCCC---CHh----HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165 121 --GGERQ---TPE----WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 121 --~~~~~---~~~----~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
+.... +.+ .+...++ .+.+.+|.+|+.... .|++.+|.+++++.||-|+|..+
T Consensus 79 ~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 79 YPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred cceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 00001 111 1222344 556689999988766 67889999999999999999543
No 145
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.38 E-value=1.1e-06 Score=88.17 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=71.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCcc---ccc-----CC----------------
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTK---GYL-----FP---------------- 103 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~l~~---~~~-----~~---------------- 103 (469)
++.||+|||||++|+++|..|++.|+ +|+|+|+.+...-... .++. ..+ ..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~---~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD 79 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC---cEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence 45799999999999999999999998 7999999865321000 0000 000 00
Q ss_pred --CCCCCCCCC--C-CccccCCCC--------CCCCHhHHHHC-CcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEE
Q 012165 104 --LDKKPARLP--G-FHTCVGSGG--------ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI 167 (469)
Q Consensus 104 --~~~~~~~~~--~-~~~~~~~~~--------~~~~~~~~~~~-~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lV 167 (469)
.......++ . +....+... ...+.+.+.+. +++++.++++++++.++. .+++.+|+++.+|.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV 159 (396)
T PRK08163 80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALI 159 (396)
T ss_pred CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEE
Confidence 000000000 0 000000000 00011112233 488999999999976544 5667788889999999
Q ss_pred eccCCCCC
Q 012165 168 VATGCTAS 175 (469)
Q Consensus 168 lAtG~~~~ 175 (469)
.|.|....
T Consensus 160 ~AdG~~S~ 167 (396)
T PRK08163 160 GCDGVKSV 167 (396)
T ss_pred ECCCcChH
Confidence 99997643
No 146
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=1.1e-06 Score=89.75 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=71.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|+++++.+... ..... ++ .....+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~ll-----------~~~d~---e~-----------~~~l~~~L 221 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGT---KVTIVEMAPQLL-----------PGEDE---DI-----------AHILREKL 221 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC-----------ccccH---HH-----------HHHHHHHH
Confidence 4689999999999999999999876 799999775421 00000 00 11234667
Q ss_pred HHCCcEEEeCCcEEEEeCCCcEEEeC-CC--eEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~-~g--~~~~yd~lVlAtG~~~~ 175 (469)
++.|++++.++++.+++.++..+.+. ++ .+++||.|++|+|.+|.
T Consensus 222 ~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 222 ENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 88899999999999998766554442 33 36999999999998876
No 147
>PRK06126 hypothetical protein; Provisional
Probab=98.36 E-value=1.8e-06 Score=90.43 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=34.6
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
|.++.++|+|||||++|+++|..|+++|+ +++|+|+.+.
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~---~v~viEr~~~ 41 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGV---DSILVERKDG 41 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence 34556899999999999999999999998 7999998864
No 148
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.36 E-value=1.5e-06 Score=86.53 Aligned_cols=99 Identities=16% Similarity=0.350 Sum_probs=75.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||||+.|+.+|..|++.+. +|+++++.+... +. .+ + ..+ .....+.
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~~~~~l---~~----~~-~-----~~~-----------~~~l~~~ 192 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDNAASLL---AS----LM-P-----PEV-----------SSRLQHR 192 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCccc---ch----hC-C-----HHH-----------HHHHHHH
Confidence 34689999999999999999999876 799999876431 00 00 0 000 1123566
Q ss_pred HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
+++.|++++.++++.+++.+.. .+.+.+|+++++|.+|+|+|..|.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 7889999999999999987543 567788989999999999998875
No 149
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.36 E-value=1.1e-05 Score=83.45 Aligned_cols=55 Identities=31% Similarity=0.441 Sum_probs=36.9
Q ss_pred CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165 302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
-|||.||.+.+|++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~-gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLA-SNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchH-HHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999742111111111 22344566677777777653
No 150
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.35 E-value=2.4e-06 Score=89.20 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
+..+||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 556899999999999999999999988 7999999864
No 151
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.35 E-value=1.5e-06 Score=89.18 Aligned_cols=97 Identities=20% Similarity=0.330 Sum_probs=72.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||++|+.+|..|++.|. +|+++++.+... |.+.. .+ .....+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~~~~~l 221 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGS---KVTVIEMLDRIL---PGEDA-----------EV-----------SKVVAKAL 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCCCC---CCCCH-----------HH-----------HHHHHHHH
Confidence 4789999999999999999999986 799999876421 10000 00 11234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCcE--EEeCCC--eEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSG--KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g--~~~~yd~lVlAtG~~~~ 175 (469)
++.+++++.++++.+++.++.. +.+.+| +++++|.||+|+|..|.
T Consensus 222 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 222 KKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 8889999999999999865543 444556 47999999999999876
No 152
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.35 E-value=1.3e-06 Score=87.69 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=73.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|+|+++.+.+. .. .. + . .. .....+.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l------~~-~~-~--~---~~-----------~~~l~~~l 196 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRC---KVTVIELAATVM------GR-NA-P--P---PV-----------QRYLLQRH 196 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCcch------hh-hc-C--H---HH-----------HHHHHHHH
Confidence 4689999999999999999999876 799999876421 00 00 0 0 00 01234566
Q ss_pred HHCCcEEEeCCcEEEEeCCC-cEEEeCCCeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEK-QTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~-~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
++.|++++.++++.+++.+. ..+.+.+|+++++|.||+|+|..|+
T Consensus 197 ~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 197 QQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred HHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChh
Confidence 78899999999999987633 3567788989999999999999875
No 153
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.35 E-value=3.8e-06 Score=80.71 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=75.4
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
..|+|||+|+.|+-+|..+++.|.+|.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 479999999999999999999999886
Q ss_pred --------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEE
Q 012165 235 --------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 282 (469)
Q Consensus 235 --------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~ 282 (469)
.+...+++.||++++++.|.+++.++ ....+.+.+|+++.||.+|+
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence 56778899999999999999999653 33468899998999999999
Q ss_pred ccCC--ccCC-------chhhhcCCcc
Q 012165 283 GIGA--KPTV-------SPFERVGLNS 300 (469)
Q Consensus 283 a~G~--~p~~-------~~~~~~gl~~ 300 (469)
|+|- .|.+ .++++.|+..
T Consensus 162 AtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 162 ATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred ecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 9994 4532 2466666653
No 154
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.34 E-value=1.5e-06 Score=87.72 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=33.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
..+||+|||||+||+++|..|++.|+ +|+|+|+.+..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGL---RIALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCC---EEEEEecCCcc
Confidence 45899999999999999999999998 79999998754
No 155
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.34 E-value=1.4e-06 Score=89.41 Aligned_cols=98 Identities=20% Similarity=0.341 Sum_probs=73.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|+++++.+... |.+ .. .+ .....+.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~l 223 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGA---EVTIVEALPRIL---PGE--------DK---EI-----------SKLAERAL 223 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCcC---CcC--------CH---HH-----------HHHHHHHH
Confidence 4789999999999999999999886 799999876431 100 00 00 12245667
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeCCC---eEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~~~yd~lVlAtG~~~~~ 176 (469)
++.+++++.+++|.+++.+.. .+.+.++ +++++|.||+|+|.+|..
T Consensus 224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 889999999999999987654 3444555 679999999999998763
No 156
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.33 E-value=9.4e-07 Score=91.01 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=32.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
+.++||+|||||+||+.||..+++.|. +|.|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence 346899999999999999999999987 799999874
No 157
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.32 E-value=1.9e-06 Score=88.53 Aligned_cols=97 Identities=22% Similarity=0.384 Sum_probs=71.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||++|+.+|..|++.|. +|+|+++.+... |.. . ..+ .....+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~---~Vtli~~~~~il---~~~--------~---~~~-----------~~~l~~~l 231 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV---EVTVVEAADRIL---PTE--------D---AEL-----------SKEVARLL 231 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccC---CcC--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999876 799998776420 100 0 000 11234567
Q ss_pred HHCCcEEEeCCcEEEEeC--CCcE--EEeCCC--eEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDI--EKQT--LITNSG--KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~--~~~~--v~~~~g--~~~~yd~lVlAtG~~~~ 175 (469)
++.|++++.++++..++. ++.. +.+.+| ++++||.||+|+|.+|.
T Consensus 232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 889999999999999974 3332 234455 36999999999999886
No 158
>PRK14694 putative mercuric reductase; Provisional
Probab=98.32 E-value=2.3e-06 Score=87.72 Aligned_cols=96 Identities=24% Similarity=0.390 Sum_probs=71.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||+|+.|+.+|..|++.|. +|+++++...++. . .. .+ .....+.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~---~Vtlv~~~~~l~~----~--------~~---~~-----------~~~l~~~l 228 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGS---RVTVLARSRVLSQ----E--------DP---AV-----------GEAIEAAF 228 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCCCCC----C--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999886 7999986432210 0 00 00 12345667
Q ss_pred HHCCcEEEeCCcEEEEeCCCcE--EEeCCCeEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
++.|++++.++.+..++.++.. +.+.++ ++++|.||+|+|.+|+.
T Consensus 229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 229 RREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence 8899999999999999876553 334444 69999999999998863
No 159
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.31 E-value=2.3e-06 Score=85.18 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=33.8
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
+|+|||||+|||+||.+|++++. +.+|+|+|+++..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p-~~~i~lfE~~~r~G 38 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGP-DVEVTLFEADDRVG 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCC-CCcEEEEecCCCCC
Confidence 69999999999999999999985 78999999987654
No 160
>PRK11445 putative oxidoreductase; Provisional
Probab=98.31 E-value=2.9e-06 Score=83.70 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=67.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC---Cccc---cc-----CCCCCCCCC-----C
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA---LTKG---YL-----FPLDKKPAR-----L 111 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~---l~~~---~~-----~~~~~~~~~-----~ 111 (469)
++||+||||||||+++|..|++. + +|+++|+.+.. ++.++. ++.. .+ ........+ .
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~ 76 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAV 76 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecccccee
Confidence 47999999999999999999987 7 79999988643 222211 1100 00 000000000 0
Q ss_pred CC--Ccccc----CCCCC-C---CCHhHH---HHCCcEEEeCCcEEEEeCCCc--EEEe-CCCe--EEEeccEEeccCCC
Q 012165 112 PG--FHTCV----GSGGE-R---QTPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLIT-NSGK--LLKYGSLIVATGCT 173 (469)
Q Consensus 112 ~~--~~~~~----~~~~~-~---~~~~~~---~~~~i~~~~~~~v~~id~~~~--~v~~-~~g~--~~~yd~lVlAtG~~ 173 (469)
.. +.... +.... . .+.+++ ...+++++.++.+..+..+.. .|++ ++|+ ++++|+||.|+|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 77 KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 00 00000 00000 0 011222 245789999988988865443 3443 4564 68999999999976
Q ss_pred C
Q 012165 174 A 174 (469)
Q Consensus 174 ~ 174 (469)
.
T Consensus 157 S 157 (351)
T PRK11445 157 S 157 (351)
T ss_pred c
Confidence 4
No 161
>PRK06185 hypothetical protein; Provisional
Probab=98.31 E-value=2.7e-06 Score=85.76 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=33.9
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
..+.+||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~---~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 3466899999999999999999999987 7999998764
No 162
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.31 E-value=4.4e-06 Score=83.79 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=34.2
Q ss_pred CCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165 133 KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
.+++++.+++++++..++. .|+++++..+.+|.||.|.|...
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 4789999999999865443 56777888899999999999764
No 163
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.31 E-value=2.5e-06 Score=85.73 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (469)
..+++++|||||+-|+..|..+++.|. +|||+|..+.+ +...+... .....+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~---~VTiie~~~~i-----------Lp~~D~ei--------------~~~~~~ 222 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGS---KVTVVERGDRI-----------LPGEDPEI--------------SKELTK 222 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCC-----------CCcCCHHH--------------HHHHHH
Confidence 456899999999999999999999987 89999988753 11111111 123455
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCe--EEEeccEEeccCCCCC
Q 012165 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK--LLKYGSLIVATGCTAS 175 (469)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~--~~~yd~lVlAtG~~~~ 175 (469)
.+++.+++++.++.+..+...+. .++++++. ++++|++++|+|-+|+
T Consensus 223 ~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 223 QLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred HHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccC
Confidence 66777899999999999877654 56777766 6899999999998876
No 164
>PRK07588 hypothetical protein; Provisional
Probab=98.30 E-value=4.3e-06 Score=83.79 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=69.6
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C-----C---------CCcccccC------------CCC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R-----P---------ALTKGYLF------------PLD 105 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~-----~---------~l~~~~~~------------~~~ 105 (469)
||+|||||++|+++|..|++.|+ +|+|+|+.+...-. + + .+...+.. ...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g 78 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTG 78 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCC
Confidence 79999999999999999999998 79999987643100 0 0 00000000 000
Q ss_pred CCCCCCC--CCccccCCCCCCC----CHhHH---HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165 106 KKPARLP--GFHTCVGSGGERQ----TPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 106 ~~~~~~~--~~~~~~~~~~~~~----~~~~~---~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
.....++ .+....+...... +.+.+ ...+++++.+++|++++.+.. +|++++|+++.+|.||-|.|.+.
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 79 RRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred CEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 0000000 0000000000000 01111 134689999999999986554 46778898899999999999764
Q ss_pred C
Q 012165 175 S 175 (469)
Q Consensus 175 ~ 175 (469)
.
T Consensus 159 ~ 159 (391)
T PRK07588 159 H 159 (391)
T ss_pred c
Confidence 3
No 165
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.30 E-value=1.4e-06 Score=89.42 Aligned_cols=51 Identities=24% Similarity=0.433 Sum_probs=43.3
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~ 286 (469)
.+.+.+++.|++|+++++|++|..+ +++.+++...+|+.+++|.||.....
T Consensus 229 aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 229 ALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence 6778889999999999999999854 55555788888878999999998776
No 166
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.30 E-value=2.4e-06 Score=86.88 Aligned_cols=95 Identities=14% Similarity=0.254 Sum_probs=73.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|++++..+... +.+. . ++ .....+.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~---~~~d--------~---~~-----------~~~l~~~l 199 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL---HPTLIHRSDKIN---KLMD--------A---DM-----------NQPILDEL 199 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---cEEEEecccccc---hhcC--------H---HH-----------HHHHHHHH
Confidence 4689999999999999999999876 799999875421 1000 0 00 11345667
Q ss_pred HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
++.||+++.+.++.+++. ..+++.+|+.+++|.+++|+|.+|.
T Consensus 200 ~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 200 DKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcC
Confidence 889999999999999974 4677788888999999999998875
No 167
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.29 E-value=2.2e-06 Score=87.27 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=73.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|+++++.+.+. +.+ . .++ .....+.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~l~~~l 217 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGV---QVTLIYRGELIL---RGF--------D---DDM-----------RALLARNM 217 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEeCCCCC---ccc--------C---HHH-----------HHHHHHHH
Confidence 4689999999999999999999876 799999765421 000 0 000 11234567
Q ss_pred HHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
++.|++++.++++.+++..+ ..+.+.+++++++|.||+|+|..|.
T Consensus 218 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 218 EGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 88999999999999997533 3566777888999999999998876
No 168
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.29 E-value=2.1e-06 Score=88.99 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=44.0
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~ 287 (469)
.+.+.+++.|+++++++.|++|..+ ++++.+|++++|+++.+|.||++++..
T Consensus 224 al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 224 AMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence 5667778899999999999999854 556668899999999999999998864
No 169
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.29 E-value=2.6e-06 Score=85.78 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=34.6
Q ss_pred CCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCC
Q 012165 133 KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 133 ~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
.+++++.+.+|++++.++ .+|++++|+++.+|.||.|.|...
T Consensus 125 ~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred CCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 378999999999986544 367788898999999999999764
No 170
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.29 E-value=7.4e-06 Score=86.09 Aligned_cols=54 Identities=31% Similarity=0.452 Sum_probs=40.9
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CCC-EEeC-CEEEEccCCccC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS-TIDA-DTIVIGIGAKPT 289 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g~-~i~~-D~vi~a~G~~p~ 289 (469)
.+.+..++.|++++.++.++++..+ ++++.+|... ++. ++.+ +.||+|+|--.+
T Consensus 222 ~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 222 RLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4556678899999999999998754 5777676553 332 5788 999999987654
No 171
>PRK06116 glutathione reductase; Validated
Probab=98.28 E-value=2.6e-06 Score=86.94 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=74.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||+|+.|+.+|..|++.|. +|+++++.+.+. +.+ +. .+ .....+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~--------~~---~~-----------~~~l~~~L 218 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGS---ETHLFVRGDAPL---RGF--------DP---DI-----------RETLVEEM 218 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCc---ccc--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999876 799999765421 000 00 00 12345667
Q ss_pred HHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
++.|++++.+++|.+++.+. ..+.+.+|+++++|.+|+|+|.+|..
T Consensus 219 ~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 219 EKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred HHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 88999999999999997642 35677788889999999999988763
No 172
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.28 E-value=2.6e-06 Score=85.14 Aligned_cols=119 Identities=19% Similarity=0.308 Sum_probs=70.2
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C-CCCcc---ccc-----CCC-CC-CCCCCCCCc
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R-PALTK---GYL-----FPL-DK-KPARLPGFH 115 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~------~-~~l~~---~~~-----~~~-~~-~~~~~~~~~ 115 (469)
||+|||||+||+++|..|+++|+ +|+|+|+.+..... + ..++. ..+ ... .. ......++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL---KIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 69999999999999999999987 79999998753211 0 00000 000 000 00 000000000
Q ss_pred cccC------------------------CCCCCCCHhHHHHCC-cEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEe
Q 012165 116 TCVG------------------------SGGERQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV 168 (469)
Q Consensus 116 ~~~~------------------------~~~~~~~~~~~~~~~-i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVl 168 (469)
.... ......+.+.+.+.+ ++++.+++|+.++.... .+++++|+++.+|.||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 0000 000000112234455 89999999999976554 45667888899999999
Q ss_pred ccCCCC
Q 012165 169 ATGCTA 174 (469)
Q Consensus 169 AtG~~~ 174 (469)
|.|...
T Consensus 158 adG~~S 163 (385)
T TIGR01988 158 ADGANS 163 (385)
T ss_pred eCCCCC
Confidence 999764
No 173
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.28 E-value=2.3e-06 Score=85.41 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=69.8
Q ss_pred cEEEEcCcHHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCCC-----C-CCCcc---ccc--CCC-CCC---CCCCCCCc-
Q 012165 53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPYE-----R-PALTK---GYL--FPL-DKK---PARLPGFH- 115 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~vie~~~~~~~~-----~-~~l~~---~~~--~~~-~~~---~~~~~~~~- 115 (469)
||+|||||+||+++|..|+++| + +|+|+|+.+..... + ..+.. ..+ .+. ... ......+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~---~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI---KIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc---eEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 6999999999999999999999 8 79999998654221 0 00000 000 000 000 00000000
Q ss_pred ---------cccCCC--------------CCCCCHhHHHH-CCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEec
Q 012165 116 ---------TCVGSG--------------GERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA 169 (469)
Q Consensus 116 ---------~~~~~~--------------~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlA 169 (469)
.....+ ....+.+.+.+ .|++++.+++|+++..+.. ++++++|.++.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 000000 00001122234 4899999999999865443 567778888999999999
Q ss_pred cCCCC
Q 012165 170 TGCTA 174 (469)
Q Consensus 170 tG~~~ 174 (469)
.|...
T Consensus 158 dG~~S 162 (382)
T TIGR01984 158 DGANS 162 (382)
T ss_pred cCCCh
Confidence 99763
No 174
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.27 E-value=3e-06 Score=76.77 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=32.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
.+|+|||+|+||++||..|+..|. +|||+||....
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR---EVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc---EEEEEEcCCCc
Confidence 479999999999999999999998 89999998743
No 175
>PRK06753 hypothetical protein; Provisional
Probab=98.27 E-value=4.8e-06 Score=82.90 Aligned_cols=116 Identities=20% Similarity=0.173 Sum_probs=68.3
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---------------CCCcccc------------cCCCC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---------------PALTKGY------------LFPLD 105 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~---------------~~l~~~~------------~~~~~ 105 (469)
+|+|||||+||+++|..|++.|+ +++|+|+.+...... ..+.... ..+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 79999999999999999999998 799999987532110 0000000 00000
Q ss_pred CCCCCCCCCccccCCCCC----CCCHhHHHH--CCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165 106 KKPARLPGFHTCVGSGGE----RQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
......+ + ..+.... ..+.+.+.+ .+.+++.++++++++.++. +|++++|+++.+|.||-|.|.+.
T Consensus 79 ~~~~~~~-~--~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 79 TLLNKVK-L--KSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred CEEeecc-c--ccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 0000000 0 0000000 001122222 2456888999999976554 56778888899999999999653
No 176
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.27 E-value=3.1e-06 Score=86.76 Aligned_cols=98 Identities=19% Similarity=0.309 Sum_probs=74.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+ +. .+ .....+.
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~l~~~ 225 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGV---KVTLINTRDRLL---SFL--------DD---EI-----------SDALSYH 225 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC---CcC--------CH---HH-----------HHHHHHH
Confidence 35799999999999999999999986 799999875421 000 00 00 1234456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
+++.+++++.++++..++..+. .+++.+|+++++|.+++|+|.+|.
T Consensus 226 l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 226 LRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence 7888999999999999875433 456677888999999999998876
No 177
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.27 E-value=3.9e-06 Score=83.09 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=65.6
Q ss_pred cEEEEcCcHHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCCCcccccCCCCC----------CCCCCCCCccccC-
Q 012165 53 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYERPALTKGYLFPLDK----------KPARLPGFHTCVG- 119 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~- 119 (469)
||+|||||+||+++|..|++. |+ +|+++|+.+..+-+++. .++..... ...+++.......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~---~V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDF---RIRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCC---eEEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence 799999999999999999987 55 89999998743321110 01100000 0011111100000
Q ss_pred -------CCCCCCCH---hH-HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCC
Q 012165 120 -------SGGERQTP---EW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 120 -------~~~~~~~~---~~-~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
.+...... +. .+..+..+.++++|..++.+ .|++.+|+++.+|.||-|.|..+
T Consensus 75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence 00000011 11 12223336667899988654 37778899999999999999764
No 178
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.26 E-value=4.1e-06 Score=84.99 Aligned_cols=40 Identities=20% Similarity=0.453 Sum_probs=35.3
Q ss_pred cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
++..+++||+||||||||++||..|++.|+ +|+|+|+...
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~ 73 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD 73 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 455667999999999999999999999998 7999998753
No 179
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.26 E-value=6e-06 Score=84.43 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=42.4
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC-----EEeCCEEEEccCC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA 286 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~~D~vi~a~G~ 286 (469)
.+.+.+++.|+++++++.|++|+..+++++.+|.+.+|+ ++.+|.||+++..
T Consensus 218 ~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 218 PIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 445667778999999999999986566767778887765 7999999999865
No 180
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.26 E-value=6.7e-07 Score=93.40 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=60.1
Q ss_pred cCCeEEEEcCChHHHHHHHH-------HHhCCCeE------------------eeeHHHHHHcCcEEEcCCeEEEEEeCC
Q 012165 206 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDT------------------TRYEQLYQQNGVKFVKGASIKNLEAGS 260 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~-------l~~~g~~v------------------~~~~~~l~~~gV~~~~~~~v~~i~~~~ 260 (469)
.++.++++|++.++++++.. +.+++.++ ..+.+.+++.||++++++.++++..+
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~- 237 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE- 237 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-
Confidence 35678899999999987753 22211110 04556778899999999999999854
Q ss_pred CCcEEEEEcC-CCC--EEeCC-EEEEcc-CCccCCchhhh
Q 012165 261 DGRVAAVKLE-DGS--TIDAD-TIVIGI-GAKPTVSPFER 295 (469)
Q Consensus 261 ~~~v~~v~~~-~g~--~i~~D-~vi~a~-G~~p~~~~~~~ 295 (469)
++++.+|... +++ .+.++ .||+|+ |+.+|.++++.
T Consensus 238 ~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 238 DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 5677777654 443 47785 588865 56676665554
No 181
>PRK07846 mycothione reductase; Reviewed
Probab=98.26 E-value=3.5e-06 Score=85.82 Aligned_cols=96 Identities=25% Similarity=0.331 Sum_probs=70.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|+++++.+.+. +.+ +. ++ ......+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~ll---~~~--------d~---~~------------~~~l~~l 216 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGV---RVTVVNRSGRLL---RHL--------DD---DI------------SERFTEL 216 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---ccc--------CH---HH------------HHHHHHH
Confidence 4799999999999999999999876 799999876431 000 00 00 0011123
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
.+.++++++++++.+++.++. .+.+.+|+++++|.|++|+|.+|.
T Consensus 217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence 356799999999999986543 466677888999999999999876
No 182
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.25 E-value=3.9e-06 Score=87.84 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=33.7
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
..++||+|||||++|+++|..|+++|+ +|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 466899999999999999999999988 7999999874
No 183
>PRK06370 mercuric reductase; Validated
Probab=98.23 E-value=4.3e-06 Score=85.73 Aligned_cols=98 Identities=16% Similarity=0.282 Sum_probs=72.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|+++++.+... +.. .. .+ .....+.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~l 222 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS---EVTVIERGPRLL---PRE--------DE---DV-----------AAAVREIL 222 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCCC---ccc--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999886 799999876431 000 00 00 11234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEe---CCCeEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~---~~g~~~~yd~lVlAtG~~~~~ 176 (469)
++.|++++.+++|.+++.++. .+.+ .++.++++|.||+|+|.+|..
T Consensus 223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 889999999999999986543 3333 234579999999999998863
No 184
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.23 E-value=3.9e-06 Score=83.94 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=30.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~ 86 (469)
+||+||||||||+++|..|++.|+ +|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI---ETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence 689999999999999999999988 79999997
No 185
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.23 E-value=3.8e-05 Score=77.42 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=46.5
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.++..|.++++++.|++|..++++++.+|++++|+++.|+.||......|.
T Consensus 237 al~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 237 AFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 3445567889999999999999876567777899999999999999998888776
No 186
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.23 E-value=3.4e-06 Score=85.78 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=34.0
Q ss_pred CcEEEeCCcEEEEeC---------CCcEEEeCCCeEEEeccEEeccCCCC
Q 012165 134 GIEMIYQDPVTSIDI---------EKQTLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 134 ~i~~~~~~~v~~id~---------~~~~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
+++++.+++|.+++. +..+|++.+|+++++|.||-|-|...
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S 183 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS 183 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence 489999999999963 22467888999999999999999764
No 187
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.23 E-value=5.5e-06 Score=82.18 Aligned_cols=96 Identities=25% Similarity=0.416 Sum_probs=69.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHc----CCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~----g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (469)
.++|+|||+|++|+.+|..|++. |. ..+|+|+..+... +.+ .. .+ ....
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~-~~~V~li~~~~~l----~~~--------~~---~~-----------~~~~ 197 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGL-RGQVTLIAGASLL----PGF--------PA---KV-----------RRLV 197 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCC-CceEEEEeCCccc----ccC--------CH---HH-----------HHHH
Confidence 46899999999999999999853 32 3479998322111 000 00 00 1234
Q ss_pred HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
.+.+++.+|+++.++++..++.+ .+.+.+|+++++|.+|+|+|..|.
T Consensus 198 ~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 198 LRLLARRGIEVHEGAPVTRGPDG--ALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHCCCEEEeCCeeEEEcCC--eEEeCCCCEEecCEEEEccCCChh
Confidence 56788999999999999988754 688888889999999999997753
No 188
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=4.4e-06 Score=85.68 Aligned_cols=97 Identities=23% Similarity=0.321 Sum_probs=71.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|+|++..+... |.. +. .+ .....+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~--------d~---~~-----------~~~l~~~l 223 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV---DVTIVEFLDRAL---PNE--------DA---EV-----------SKEIAKQY 223 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCcC---Ccc--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999986 799998655320 000 00 00 12345677
Q ss_pred HHCCcEEEeCCcEEEEeCCCcE--EEeC--CC--eEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQT--LITN--SG--KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~--v~~~--~g--~~~~yd~lVlAtG~~~~ 175 (469)
++.|++++.+++|..++.++.. +.+. +| +++++|.|++|+|.+|.
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 8899999999999999765543 3333 55 46999999999998876
No 189
>PLN02612 phytoene desaturase
Probab=98.22 E-value=1.8e-05 Score=82.94 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=43.4
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~ 286 (469)
.+.+.+++.|.++++++.|++|+.++++.+.++.+.+|+++.+|.||++++.
T Consensus 313 ~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 313 PIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 3445666789999999999999876677676788889999999999999763
No 190
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.22 E-value=2e-06 Score=84.37 Aligned_cols=98 Identities=22% Similarity=0.330 Sum_probs=72.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCC----------CCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGM----------ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 120 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~----------~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (469)
..+++|||||+.|+..|-+|++.-. .+.+|+|||..+... |.++. ++
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL---p~~~~-----------~l--------- 211 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL---PMFPP-----------KL--------- 211 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc---cCCCH-----------HH---------
Confidence 3479999999999999999876422 023789999876531 11111 11
Q ss_pred CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe-EEEeccEEeccCCCCC
Q 012165 121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTAS 175 (469)
Q Consensus 121 ~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~~~yd~lVlAtG~~~~ 175 (469)
.....+++++.||++++++.|++++++. |++++|. +++++.+|.|+|.++.
T Consensus 212 --~~~a~~~L~~~GV~v~l~~~Vt~v~~~~--v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 212 --SKYAERALEKLGVEVLLGTPVTEVTPDG--VTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred --HHHHHHHHHHCCCEEEcCCceEEECCCc--EEEccCCeeEecCEEEEcCCCcCC
Confidence 1235678899999999999999998765 6777777 4999999999998864
No 191
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.22 E-value=4.5e-06 Score=85.07 Aligned_cols=98 Identities=18% Similarity=0.216 Sum_probs=73.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|++++..+... +.+. .. + .....+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~il---~~~d--------~~---~-----------~~~~~~~l 217 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGS---ETHLVIRHERVL---RSFD--------SM---I-----------SETITEEY 217 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCC---cccC--------HH---H-----------HHHHHHHH
Confidence 4799999999999999999999886 799999775421 0000 00 0 11245667
Q ss_pred HHCCcEEEeCCcEEEEeCCC---cEEEeCCC-eEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSG-KLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g-~~~~yd~lVlAtG~~~~~ 176 (469)
++.||+++.++.+..++.+. ..+.++++ +.+++|.+++|+|.+|..
T Consensus 218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 88999999999999997542 24666677 579999999999988763
No 192
>PRK06996 hypothetical protein; Provisional
Probab=98.21 E-value=4.2e-06 Score=84.07 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHHHcCC-CCCcEEEEcCCCCCC---CCC--------------CCCcccccCCCCCC-
Q 012165 47 FANENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAP---YER--------------PALTKGYLFPLDKK- 107 (469)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~vie~~~~~~---~~~--------------~~l~~~~~~~~~~~- 107 (469)
|..+.+||+||||||+|+++|..|++.|. ...+|+|+|+.+... ..| -.+......+....
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~ 86 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence 56677899999999999999999999873 124799999975321 100 00000000000000
Q ss_pred ----------CCC-----CCCCccccC-CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCC---eEEEeccE
Q 012165 108 ----------PAR-----LPGFHTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSL 166 (469)
Q Consensus 108 ----------~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~~~yd~l 166 (469)
... .+..-..+. ......+.+.+.+.+++++.+++++.++.... ++++.++ +++++|.|
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lv 166 (398)
T PRK06996 87 VSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIA 166 (398)
T ss_pred EecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEE
Confidence 000 000000000 00011122334556899999999988865544 4555544 57999999
Q ss_pred EeccCC
Q 012165 167 IVATGC 172 (469)
Q Consensus 167 VlAtG~ 172 (469)
|-|.|.
T Consensus 167 IgADG~ 172 (398)
T PRK06996 167 VQAEGG 172 (398)
T ss_pred EECCCC
Confidence 999994
No 193
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.21 E-value=4.4e-06 Score=85.68 Aligned_cols=98 Identities=19% Similarity=0.337 Sum_probs=71.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||+|+.|+.+|..|++.|. +|+++++.+.+. |.. +. .+ .....+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~l~~~l 217 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS---EVTILQRSDRLL---PRE--------EP---EI-----------SAAVEEAL 217 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcCC---Ccc--------CH---HH-----------HHHHHHHH
Confidence 4789999999999999999999986 799999875421 000 00 00 11234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeC---CCeEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~---~g~~~~yd~lVlAtG~~~~~ 176 (469)
++.|++++.+++|..++.++. .+++. +++++++|.+++|+|.+|..
T Consensus 218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 888999999988999976543 34443 23579999999999998763
No 194
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.20 E-value=5e-06 Score=85.20 Aligned_cols=98 Identities=16% Similarity=0.322 Sum_probs=73.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||+|..|+.+|..|++.|. +|++++..+.. +...+... .....+.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtli~~~~~~-----------l~~~d~~~--------------~~~l~~~L 228 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGV---KVTLVSSRDRV-----------LPGEDADA--------------AEVLEEVF 228 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcC-----------CCCCCHHH--------------HHHHHHHH
Confidence 4689999999999999999999876 89999976542 10000000 01235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
++.||+++.++++.+++.... .+.+.+|+++++|.+++|+|.+|..
T Consensus 229 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 889999999999999964333 4566788889999999999988764
No 195
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.20 E-value=2e-05 Score=79.46 Aligned_cols=35 Identities=17% Similarity=0.440 Sum_probs=32.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
+||+|||||+.|+++|++|++.|. +|+|+|+++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~---~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY---QVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCC
Confidence 699999999999999999999986 79999998753
No 196
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.20 E-value=1.4e-06 Score=89.02 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=43.2
Q ss_pred HHHHH----cC--cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCc
Q 012165 238 QLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 299 (469)
Q Consensus 238 ~~l~~----~g--V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~ 299 (469)
+.+++ .| ++++++++|+.++..+ +....|.+.+| ++.+|.||+|+|.... .+++.+|+.
T Consensus 219 ~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~ 283 (497)
T PTZ00383 219 KHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG 283 (497)
T ss_pred HHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence 44555 56 8899999999998643 33446777777 6999999999997654 456666653
No 197
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.19 E-value=5.2e-06 Score=85.32 Aligned_cols=98 Identities=14% Similarity=0.280 Sum_probs=71.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++|+|||+|+.|+.+|..|++.|. +|+++++.+.+. +.. +. .+ .....+.
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~~~~~ 233 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGA---EVTILEALPAFL---AAA--------DE---QV-----------AKEAAKA 233 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCccC---CcC--------CH---HH-----------HHHHHHH
Confidence 34799999999999999999999876 799999876421 000 00 00 1123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCc--EEEeCC--C--eEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~--g--~~~~yd~lVlAtG~~~~ 175 (469)
+++.|++++.+++|.+++.+.. .+.+.+ | +++++|.|++|+|.+|.
T Consensus 234 l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 7788999999999999986644 344333 3 46999999999999876
No 198
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.19 E-value=4.9e-06 Score=90.36 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=75.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||||+.|+.+|..|++.|. +|+|++..+.. ++. .+ +... .....+.
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G~---~Vtvv~~~~~l------l~~-~l---d~~~--------------~~~l~~~ 191 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLGM---DVSVIHHAPGL------MAK-QL---DQTA--------------GRLLQRE 191 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEccCCch------hhh-hc---CHHH--------------HHHHHHH
Confidence 34789999999999999999999987 79999876532 000 00 0000 0123566
Q ss_pred HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
+++.||++++++.+..+..+.. .|.+.+|+++++|.+|+|+|.+|.
T Consensus 192 l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 192 LEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 7889999999999998876543 577889999999999999999876
No 199
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.18 E-value=5.8e-07 Score=88.45 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
+||+|||||+||+++|..|+++|+ +|+|+|+.+.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~---~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI---DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC---EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhccc---ccccchhcccc
Confidence 689999999999999999999998 79999998764
No 200
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.17 E-value=8.3e-06 Score=83.48 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=31.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
++||||||+|.||++||..+++.|. +|+|+|+.+
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~---~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGF---DVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 3799999999999999999999886 799999974
No 201
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.17 E-value=2.2e-05 Score=84.09 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=38.7
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+++ |++++.++.|++++.. ++.+ .|.+.+|+.+.+|.||+|+|....
T Consensus 415 ~~~a~~-Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 415 LALAGQ-QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHhccc-CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 344556 8999999999999864 3444 377788877899999999998654
No 202
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.16 E-value=7e-06 Score=82.29 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=32.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
++||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~---~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC---CEEEEEcCCc
Confidence 5799999999999999999999998 7999999874
No 203
>PLN02507 glutathione reductase
Probab=98.16 E-value=7e-06 Score=84.63 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=73.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|+|++..+.. . +.+ +. .+ .....+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~~-l--~~~--------d~---~~-----------~~~l~~~l 254 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGA---TVDLFFRKELP-L--RGF--------DD---EM-----------RAVVARNL 254 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEecCCc-C--ccc--------CH---HH-----------HHHHHHHH
Confidence 4789999999999999999999876 79999876532 0 000 00 00 11234567
Q ss_pred HHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
++.||+++.+++|.+++..+ ..+.+.+|+++++|.+++|+|.+|..
T Consensus 255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 255 EGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 88999999999999997543 34666778889999999999988763
No 204
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.15 E-value=7.8e-06 Score=82.72 Aligned_cols=97 Identities=14% Similarity=0.292 Sum_probs=71.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcC-----------CCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHG-----------MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 120 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g-----------~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (469)
.+++|||||+.|+..|..|+..- .++.+|++|+..+... +.+.. .+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll---~~~~~-----------~~--------- 230 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL---GSFDQ-----------AL--------- 230 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc---ccCCH-----------HH---------
Confidence 48999999999999999987531 0134899999875421 00100 00
Q ss_pred CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165 121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 121 ~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
.....+.+++.||+++.++++.+++.+ .|++++|+++++|.+|+|+|..|.
T Consensus 231 --~~~~~~~L~~~gV~v~~~~~v~~v~~~--~v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 231 --RKYGQRRLRRLGVDIRTKTAVKEVLDK--EVVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred --HHHHHHHHHHCCCEEEeCCeEEEEeCC--EEEECCCCEEEccEEEEccCCCCc
Confidence 123457788999999999999998754 578889999999999999997764
No 205
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.15 E-value=1.4e-06 Score=88.19 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=30.0
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC-----CCCcc-------------cccCCCCC---CC-CC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER-----PALTK-------------GYLFPLDK---KP-AR 110 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~-----~~l~~-------------~~~~~~~~---~~-~~ 110 (469)
||||||||+||++||..+++.|. +|+|||+.+.++... ..+.. .+...... .. ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCC---EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 79999999999999999999997 899999998764210 00000 00000000 00 00
Q ss_pred CCCC---ccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc---EEEeCC---CeEEEeccEEeccCC
Q 012165 111 LPGF---HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNS---GKLLKYGSLIVATGC 172 (469)
Q Consensus 111 ~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~---g~~~~yd~lVlAtG~ 172 (469)
..++ ...........+.+++.+.|+++++++.+.++..++. .|++.+ ..++.++.+|-|||-
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 0000111122345566788999999999999987764 344433 457999999999994
No 206
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.15 E-value=6.3e-06 Score=89.64 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=75.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||||+.|+.+|..|++.|. +|+|++..+... +. .+ +... .....+.
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G~---~VtvVe~~~~ll------~~-~l---d~~~--------------~~~l~~~ 196 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLGV---ETHVIEFAPMLM------AE-QL---DQMG--------------GEQLRRK 196 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeccccch------hh-hc---CHHH--------------HHHHHHH
Confidence 34689999999999999999999987 799998765420 00 00 0000 1124567
Q ss_pred HHHCCcEEEeCCcEEEEeCCC----cEEEeCCCeEEEeccEEeccCCCCCc
Q 012165 130 YKEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~----~~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
+++.||+++++..+.++..++ ..+.+.+|+++++|.||+|+|.+|+.
T Consensus 197 L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 197 IESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 788999999999999996532 25678899999999999999998863
No 207
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.15 E-value=1.2e-05 Score=77.14 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=65.2
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------eeHHHHHHcCcEEEcCCeEE
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------RYEQLYQQNGVKFVKGASIK 254 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------~~~~~l~~~gV~~~~~~~v~ 254 (469)
+++|||+|+.|+++|..|.+.|.+++ .+.+.+++.|+++++ .++.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 58999999999999999999887766 124456778999998 7899
Q ss_pred EEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh
Q 012165 255 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 293 (469)
Q Consensus 255 ~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~ 293 (469)
+++..+ +. ..+.+.+++++.+|.+|+|+|.+|+...+
T Consensus 81 ~v~~~~-~~-~~v~~~~~~~~~~d~liiAtG~~~~~~~i 117 (300)
T TIGR01292 81 KVDLSD-RP-FKVKTGDGKEYTAKAVIIATGASARKLGI 117 (300)
T ss_pred EEEecC-Ce-eEEEeCCCCEEEeCEEEECCCCCcccCCC
Confidence 988642 22 24677788899999999999998875433
No 208
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.15 E-value=5.9e-06 Score=82.67 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=32.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
.+||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence 4799999999999999999999998 7999999874
No 209
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.14 E-value=2.1e-05 Score=79.21 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=40.0
Q ss_pred eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p 288 (469)
+.+.+++.|++++.++.|++++..+++.+..|.+.+| .+.++.||+++|...
T Consensus 189 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 189 YARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 3456788999999999999997544456666787777 699999888877543
No 210
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.14 E-value=6.1e-06 Score=82.15 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
+.||+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGI---KTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCC---eEEEecCCC
Confidence 4689999999999999999999998 799999863
No 211
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.13 E-value=2e-05 Score=79.58 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=32.8
Q ss_pred CcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 134 ~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
+..++++++|++++.... ++++.+|.++++|.||.|.|...
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 456778899999976543 56778888899999999999764
No 212
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.13 E-value=8.8e-06 Score=83.36 Aligned_cols=98 Identities=15% Similarity=0.223 Sum_probs=70.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||||+.|+.+|..|++.|. +|++++..+... +.+ +. .+ .....+.
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~---~Vtlie~~~~il---~~~--------d~---~~-----------~~~l~~~ 224 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGA---QVTVVEYLDRIC---PGT--------DT---ET-----------AKTLQKA 224 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCCCC---CCC--------CH---HH-----------HHHHHHH
Confidence 35799999999999999999999886 799998765421 000 00 00 1124466
Q ss_pred HHHCCcEEEeCCcEEEEeCCCc--EEEeC-----CCeEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN-----SGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~-----~g~~~~yd~lVlAtG~~~~ 175 (469)
+++.|++++.++++.++..++. .+.+. +++++++|.|++|+|.+|.
T Consensus 225 l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 225 LTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred HHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 7888999999999999976433 33332 2357999999999998875
No 213
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.12 E-value=1e-05 Score=82.51 Aligned_cols=97 Identities=27% Similarity=0.372 Sum_probs=70.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|++|++.+.+. +.+.. .+ .....+ +
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~ll---~~~d~-----------~~-----------~~~l~~-~ 219 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT---RVTIVNRSTKLL---RHLDE-----------DI-----------SDRFTE-I 219 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCccc---cccCH-----------HH-----------HHHHHH-H
Confidence 4789999999999999999999886 799999875421 00000 00 001122 2
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
.+.+++++.++++.+++.++. .+++.+|+++++|.+++|+|.+|..
T Consensus 220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 346899999999999986543 4566678889999999999988763
No 214
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.12 E-value=1.1e-05 Score=83.31 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=71.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|++++....+ +.+.. . + .....+.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~l----~~~d~--------~---~-----------~~~l~~~l 232 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF---DVTVAVRSIPL----RGFDR--------Q---C-----------SEKVVEYM 232 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCccc----ccCCH--------H---H-----------HHHHHHHH
Confidence 4689999999999999999999986 79999753211 11100 0 0 12345677
Q ss_pred HHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
++.+++++.++.+..+.... ..+.+.+|+++.+|.|++|+|.+|.
T Consensus 233 ~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 233 KEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 88999999998888776533 3566677888999999999998876
No 215
>PLN02661 Putative thiazole synthesis
Probab=98.12 E-value=8.3e-06 Score=78.54 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYA 89 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~~~~ 89 (469)
...+||+|||||+||++||..|++. |. +|+|||+....
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~---kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNV---KVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCC---eEEEEecCccc
Confidence 3468999999999999999999975 44 89999997654
No 216
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.12 E-value=1e-05 Score=81.92 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=37.8
Q ss_pred CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165 302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
.|||.||.+.||+.|++||+|.|+.......++.. -.+...+...|+.+++++.
T Consensus 331 ~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~-gnsl~~~lvfGr~Ag~~a~ 384 (433)
T PRK06175 331 MGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLA-SNSLLEGLVFSKRGAEKIN 384 (433)
T ss_pred cCCEEECCCccccCCCeEecccccccCCCccccch-hHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999742111011111 2345567778888888875
No 217
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.11 E-value=8.9e-06 Score=81.89 Aligned_cols=98 Identities=17% Similarity=0.299 Sum_probs=77.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||+|+.|+.+|..|+++|. +++++|..+...-. .+. ..+ .....+.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~~~~~-------~~~------~~~-----------~~~~~~~l 188 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADRLGGQ-------LLD------PEV-----------AEELAELL 188 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccccchh-------hhh------HHH-----------HHHHHHHH
Confidence 5899999999999999999999997 79999988764211 000 000 12356778
Q ss_pred HHCCcEEEeCCcEEEEeCCCcE-----EEeCCCeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~-----v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
++++++++++..+..++..... +...++..+++|.+++++|.+|.
T Consensus 189 ~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 189 EKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 8999999999999999987653 56778888999999999999884
No 218
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.11 E-value=1.7e-05 Score=71.57 Aligned_cols=79 Identities=25% Similarity=0.474 Sum_probs=56.1
Q ss_pred EEEcCChHHHHHHHHHHhCCCe-Ee-------------------------------------------------------
Q 012165 211 VVVGGGYIGMEVAAAAVGWKLD-TT------------------------------------------------------- 234 (469)
Q Consensus 211 vVvG~G~~g~e~A~~l~~~g~~-v~------------------------------------------------------- 234 (469)
+|||+|+.|+-+|..|.+.|.+ +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999988 55
Q ss_pred ------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC--ccCCc
Q 012165 235 ------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTVS 291 (469)
Q Consensus 235 ------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~--~p~~~ 291 (469)
.+++..++.+++++++++|++++.++++ ..|++++++++.||.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 4566677889999999999999987555 4688899988999999999997 55543
No 219
>PRK07233 hypothetical protein; Provisional
Probab=98.11 E-value=5.6e-06 Score=84.09 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=39.1
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~ 287 (469)
.+.+.+++.|++++++++|++|+.+ ++.+..+. .+++.+++|.||++++..
T Consensus 203 ~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 203 ALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCHH
Confidence 4556677789999999999999864 34443333 567789999999998853
No 220
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.11 E-value=2e-05 Score=81.54 Aligned_cols=37 Identities=35% Similarity=0.413 Sum_probs=33.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
..+||||||+|.||++||.++++.|. +|+|||+.+..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga---~VivlEK~~~~ 96 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGM---NPVILEKMPVA 96 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCC
Confidence 46899999999999999999999987 79999998754
No 221
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.10 E-value=1.1e-05 Score=82.22 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=70.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|++++..+... .. .+ . ..+ .....+.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l------~~-~~---~---~~~-----------~~~l~~~l 201 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGK---NVRIIQLEDRIL------PD-SF---D---KEI-----------TDVMEEEL 201 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC---cEEEEeCCcccC------ch-hc---C---HHH-----------HHHHHHHH
Confidence 4789999999999999999999876 799998765321 00 00 0 000 12345677
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
++.|++++.++++.+++.+++ .+.++ +.++.+|.+++|+|..|.
T Consensus 202 ~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 202 RENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEEEECcCCCcC
Confidence 889999999999999976554 23444 446999999999998875
No 222
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.10 E-value=5.2e-06 Score=83.24 Aligned_cols=46 Identities=30% Similarity=0.379 Sum_probs=35.0
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
+.+++.+++++.++.|..+..... .+.+ ++.++.+|+||+|||...
T Consensus 113 ~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 113 NELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 345677999999999999876544 3444 456799999999999753
No 223
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.09 E-value=1.2e-05 Score=80.28 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=57.0
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------ 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------ 234 (469)
+|+|||||++|+-+|..+++.|.+|.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 58999999999999999999998886
Q ss_pred --------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEE
Q 012165 235 --------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 282 (469)
Q Consensus 235 --------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~ 282 (469)
.+.+.+++.||+++++++|.+++.. ++.+..|.++++.++.+|.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence 4567778899999999999999865 4455578887788999999999
Q ss_pred ccCCcc
Q 012165 283 GIGAKP 288 (469)
Q Consensus 283 a~G~~p 288 (469)
|+|-..
T Consensus 161 AtGG~S 166 (409)
T PF03486_consen 161 ATGGKS 166 (409)
T ss_dssp ----SS
T ss_pred ecCCCC
Confidence 999764
No 224
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.09 E-value=1.4e-05 Score=79.30 Aligned_cols=39 Identities=26% Similarity=0.473 Sum_probs=32.6
Q ss_pred CCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCC
Q 012165 133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174 (469)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~ 174 (469)
.|++++.+++|..++.. .|.+.+|. +.+|+||+|||...
T Consensus 159 ~Gv~i~~~t~V~~i~~~--~v~t~~g~-i~a~~VV~A~G~~s 197 (365)
T TIGR03364 159 HGVEFHWNTAVTSVETG--TVRTSRGD-VHADQVFVCPGADF 197 (365)
T ss_pred CCCEEEeCCeEEEEecC--eEEeCCCc-EEeCEEEECCCCCh
Confidence 39999999999999754 78887775 78999999999764
No 225
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.09 E-value=2.3e-06 Score=83.57 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=31.5
Q ss_pred CCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCC
Q 012165 133 KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC 172 (469)
Q Consensus 133 ~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~ 172 (469)
.+++++. .+|+.+..++. -|.+.+|..+.+|.+|+|||.
T Consensus 109 ~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 109 PNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 5898876 69999987665 467889999999999999997
No 226
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.09 E-value=1.2e-05 Score=81.99 Aligned_cols=98 Identities=18% Similarity=0.341 Sum_probs=71.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||+|+.|+.+|..|++.|. +|+++++.+... |.. .. .+ .....+.
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~ 208 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGS---KVTILEAASLFL---PRE--------DR---DI-----------ADNIATI 208 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC---CCc--------CH---HH-----------HHHHHHH
Confidence 34689999999999999999999876 799999865321 000 00 00 0123466
Q ss_pred HHHCCcEEEeCCcEEEEeCCCcE--EEeCCCeEEEeccEEeccCCCCCc
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
+++.|++++.++++.+++.++.. +.++++ ++.+|.+++|+|.+|..
T Consensus 209 l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 209 LRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 78899999999999999865543 344444 48999999999998863
No 227
>PRK13748 putative mercuric reductase; Provisional
Probab=98.09 E-value=1.2e-05 Score=84.56 Aligned_cols=96 Identities=20% Similarity=0.318 Sum_probs=70.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|+|+++...++ ..+. .+ .....+.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~------------~~d~---~~-----------~~~l~~~l 320 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGS---KVTILARSTLFF------------REDP---AI-----------GEAVTAAF 320 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCcccc------------ccCH---HH-----------HHHHHHHH
Confidence 4789999999999999999999886 799998643210 0000 00 11345667
Q ss_pred HHCCcEEEeCCcEEEEeCCCcE--EEeCCCeEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
++.|++++.++.+..++.++.. +.++++ ++.+|.+++|+|..|..
T Consensus 321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 8899999999999998765443 344444 59999999999998863
No 228
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.09 E-value=1.5e-05 Score=79.96 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
.||+||||||||++||..|++.|+ +|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~---~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGI---QTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 489999999999999999999998 7999998753
No 229
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.08 E-value=1.1e-05 Score=82.67 Aligned_cols=101 Identities=18% Similarity=0.307 Sum_probs=71.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||||+.|+.+|..+........+|+|++..+... +.+ +. .+ .....+.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il---~~~--------d~---~~-----------~~~l~~~ 240 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL---RGF--------DS---TL-----------RKELTKQ 240 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc---ccc--------CH---HH-----------HHHHHHH
Confidence 35789999999999999987765411123899999765421 000 00 00 1234566
Q ss_pred HHHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
+++.|++++.++.+.++.... ..+.+.+++++++|.+++|+|.+|.
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 788999999999999987532 3567777888999999999998876
No 230
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.07 E-value=1.8e-05 Score=77.44 Aligned_cols=76 Identities=29% Similarity=0.508 Sum_probs=62.2
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------ 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------ 234 (469)
.|+|||||..|+|.|..+++.|.+|.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 48999999999999999999999886
Q ss_pred -------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165 235 -------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286 (469)
Q Consensus 235 -------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~ 286 (469)
.+.+.+++ .+++++. ..|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 34455555 7899875 57999975 478899999999999999999999999
No 231
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.06 E-value=1.6e-05 Score=81.66 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=69.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
..+++|||||+.|+.+|..|++.|. +|+++++...+ +.+. ... .....+.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~l----~~~d--------~~~--------------~~~l~~~L 230 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFD--------QDC--------------ANKVGEHM 230 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCC---cEEEEEecccc----cccC--------HHH--------------HHHHHHHH
Confidence 4689999999999999999999886 79999753211 1110 000 01235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeCCC---eEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~~~yd~lVlAtG~~~~ 175 (469)
++.||+++.++.+..+..... .+++.++ +++++|.+++|+|..|.
T Consensus 231 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 231 EEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 889999999988888765332 4555554 37999999999998876
No 232
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.06 E-value=1.6e-05 Score=79.98 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=32.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
.+|+|||||+||+++|..|++.|+ +|+|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcc
Confidence 689999999999999999999988 79999987653
No 233
>PRK14727 putative mercuric reductase; Provisional
Probab=98.05 E-value=1.6e-05 Score=81.80 Aligned_cols=96 Identities=20% Similarity=0.363 Sum_probs=69.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+..|..|++.|. +|+++++...++ .+ +. .+ .....+.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~l~----~~--------d~---~~-----------~~~l~~~L 238 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGS---RVTILARSTLLF----RE--------DP---LL-----------GETLTACF 238 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCCC----cc--------hH---HH-----------HHHHHHHH
Confidence 4789999999999999999999876 799997542110 00 00 00 11245567
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
++.|++++.++++..++.++. .+.+.++ ++.+|.+++|+|..|..
T Consensus 239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 889999999999998875443 3444444 58999999999998763
No 234
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.05 E-value=1.4e-05 Score=84.05 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
..+||||||||.||++||.++++.+. ..+|+|+|+...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 45799999999999999999998763 458999999764
No 235
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.05 E-value=0.00011 Score=75.00 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=36.4
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER 93 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~ 93 (469)
+..+||||||||++|+++|..|++... ..+|+|+|+.....++.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~-~~~V~vlEr~~~~a~~s 47 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDP-DWNIEVVERLDSPAIES 47 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCC-CCeEEEEEcCCCcchhc
Confidence 456799999999999999999999843 56999999955666553
No 236
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.01 E-value=0.00016 Score=67.58 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=90.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------- 234 (469)
.-+|+|||+|+.|+-+|..|++.|.++.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 4579999999999999999999887765
Q ss_pred ----eeHHHHHHcCcEEEcCCeEEEEEeCCCC-cEEEEEcCC-----------CCEEeCCEEEEccCCccCC-chh-hhc
Q 012165 235 ----RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLED-----------GSTIDADTIVIGIGAKPTV-SPF-ERV 296 (469)
Q Consensus 235 ----~~~~~l~~~gV~~~~~~~v~~i~~~~~~-~v~~v~~~~-----------g~~i~~D~vi~a~G~~p~~-~~~-~~~ 296 (469)
.+.+...+.|++++.++.+.++...+++ ++.+|.+.. ...+.++.||.|+|..... .++ +..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 2334456789999999999998765442 577776532 2478999999999976532 232 222
Q ss_pred CCcccC------CCE--------EeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165 297 GLNSSV------GGI--------QVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 357 (469)
Q Consensus 297 gl~~~~------g~i--------~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~ 357 (469)
++.... +.. .|+.+- --+|++|++|=.+.-... ..+..+ ....=...|+.+|+.++.
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~-~~~~g~~~~gm~~~~~~~-~~rmgp--~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTR-EVVPNLYVAGMAVAAVHG-LPRMGP--IFGGMLLSGKHVAEQILE 251 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccC-cccCCEEEechhhhhhcC-CCCcCc--hHHHHHHhhHHHHHHHHH
Confidence 222110 111 111111 148999999977653211 011111 111122457777776653
No 237
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.00 E-value=2e-05 Score=80.73 Aligned_cols=98 Identities=14% Similarity=0.267 Sum_probs=70.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+ +. .+ .....+.
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~~~~~ 219 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV---KVTVFERGDRIL---PLE--------DP---EV-----------SKQAQKI 219 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cch--------hH---HH-----------HHHHHHH
Confidence 35799999999999999999999886 799999875421 000 00 00 1123455
Q ss_pred HHHCCcEEEeCCcEEEEeCCCc-EEE--eC--CCeEEEeccEEeccCCCCCc
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQ-TLI--TN--SGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~-~v~--~~--~g~~~~yd~lVlAtG~~~~~ 176 (469)
+++. +++++++++.+++..+. .++ .. ++.++++|.+++|+|.+|..
T Consensus 220 l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 220 LSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred Hhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 6777 99999999999976543 344 22 33569999999999988763
No 238
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.99 E-value=6.8e-05 Score=75.76 Aligned_cols=51 Identities=29% Similarity=0.488 Sum_probs=39.6
Q ss_pred eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p 288 (469)
+.+.+++.|++++.++.|++++.. ++.+..+.+.++ ++.+|.||+|+|...
T Consensus 207 l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 207 LAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 345667889999999999999864 444545666655 799999999999754
No 239
>PTZ00058 glutathione reductase; Provisional
Probab=97.99 E-value=2.3e-05 Score=81.44 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=70.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|++++..+... +.+ +.. + .....+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~---~Vtli~~~~~il---~~~--------d~~---i-----------~~~l~~~L 288 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGA---ESYIFARGNRLL---RKF--------DET---I-----------INELENDM 288 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---cEEEEEeccccc---ccC--------CHH---H-----------HHHHHHHH
Confidence 5799999999999999999999886 799999765320 000 000 0 11234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCc---EEEeCC-CeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ---TLITNS-GKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~---~v~~~~-g~~~~yd~lVlAtG~~~~ 175 (469)
++.|++++.+..+.+++.++. .+...+ ++++++|.|++|+|.+|.
T Consensus 289 ~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 289 KKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 888999999999999976432 233333 457999999999998775
No 240
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.98 E-value=9.5e-06 Score=59.02 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.6
Q ss_pred EEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 56 IIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
|||||++||++|..|++.|+ +|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS---EEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC---cEEEEecCcccC
Confidence 89999999999999999987 899999998764
No 241
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.96 E-value=2.2e-05 Score=80.89 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=30.7
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
+||+|||||+||+.+|..+++.|. +++|+++...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGA---KTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---CEEEEecccc
Confidence 589999999999999999999987 7999998643
No 242
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.96 E-value=0.00021 Score=69.89 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=48.0
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.+++.|++++++++|.+++.. ++.+..|.+++|.++++|.||+|+|+...
T Consensus 178 ni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 178 NIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcchH
Confidence 5678899999999999999999864 55567899999999999999999999876
No 243
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=3e-05 Score=79.50 Aligned_cols=97 Identities=16% Similarity=0.301 Sum_probs=68.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||||+.|+.+|..|++.|. +|+||+..+... |.+ +... .....+.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~il---~~~--------d~~~--------------~~~~~~~l 225 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGS---EVDVVEMFDQVI---PAA--------DKDI--------------VKVFTKRI 225 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCCCC---CcC--------CHHH--------------HHHHHHHH
Confidence 4799999999999999999999986 799999776421 000 0000 01233455
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeCC--C--eEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~--g--~~~~yd~lVlAtG~~~~~ 176 (469)
++. ++++.++++..+...+. .+.+.+ + +++++|.+|+|+|.+|..
T Consensus 226 ~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 226 KKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred hhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 666 99999999998875433 344433 2 469999999999998763
No 244
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.93 E-value=0.00018 Score=67.40 Aligned_cols=83 Identities=27% Similarity=0.353 Sum_probs=64.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------- 234 (469)
...|+|||+|+.|+-+|..|++.|.++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 4579999999999999999999887775
Q ss_pred ----eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-----------CCCEEeCCEEEEccCCccC
Q 012165 235 ----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 ----~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+..++.|++++.++.+.++...+++++.++... +...+.++.||.|+|....
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 233445678999999999999876545466666543 2247999999999997654
No 245
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.92 E-value=2.6e-05 Score=81.39 Aligned_cols=36 Identities=25% Similarity=0.533 Sum_probs=32.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
...+||+|||||..|+++|+.|+++|. +|+|||+..
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~---~V~LlEk~d 39 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGL---RCILVERHD 39 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCC---eEEEEECCC
Confidence 345899999999999999999999987 799999965
No 246
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.92 E-value=5.8e-05 Score=78.33 Aligned_cols=83 Identities=28% Similarity=0.413 Sum_probs=68.1
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeE
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASI 253 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v 253 (469)
...+++|||||+.|+.+|..+++.|.+++ .+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 35789999999999999999999998886 2245567789999999999
Q ss_pred EEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165 254 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290 (469)
Q Consensus 254 ~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 290 (469)
.++...+ +. ..+.+++|+.+.+|.+|+|+|..|..
T Consensus 291 ~~I~~~~-~~-~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 291 KKIETED-GL-IVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEecC-Ce-EEEEECCCCEEEeCEEEECCCCCcCC
Confidence 9997543 22 35677888899999999999998753
No 247
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.91 E-value=2.8e-05 Score=76.18 Aligned_cols=99 Identities=20% Similarity=0.346 Sum_probs=78.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
...||++|+|+.|+.+|..|+.... +||+|++++.+ .. . ++.+ .+ .....+++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e~~~-~~-----~-lf~~------~i-----------~~~~~~y~ 265 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPEPWL-LP-----R-LFGP------SI-----------GQFYEDYY 265 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCc---eEEEEccCccc-hh-----h-hhhH------HH-----------HHHHHHHH
Confidence 6789999999999999999999866 89999998763 11 1 1111 11 13457788
Q ss_pred HHCCcEEEeCCcEEEEeCCC----cEEEeCCCeEEEeccEEeccCCCCCc
Q 012165 131 KEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~----~~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
++++++++.++.+.+++... ..|.+.+++++++|-||+.+|++|..
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 99999999999888887654 26788999999999999999999864
No 248
>PRK06847 hypothetical protein; Provisional
Probab=97.91 E-value=6.9e-05 Score=74.58 Aligned_cols=82 Identities=28% Similarity=0.362 Sum_probs=66.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------- 234 (469)
.++|+|||+|+.|+-+|..|++.|.+++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 5689999999999999999999988876
Q ss_pred ----------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165 235 ----------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286 (469)
Q Consensus 235 ----------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~ 286 (469)
.+.+.+++.|++++.++++++++..++ .+ .+.+.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-GV-TVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-EE-EEEEcCCCEEEcCEEEECcCC
Confidence 122334457999999999999986433 33 577889999999999999998
Q ss_pred ccCC
Q 012165 287 KPTV 290 (469)
Q Consensus 287 ~p~~ 290 (469)
.+..
T Consensus 162 ~s~~ 165 (375)
T PRK06847 162 YSKV 165 (375)
T ss_pred Ccch
Confidence 7754
No 249
>PRK10262 thioredoxin reductase; Provisional
Probab=97.90 E-value=3.4e-05 Score=75.09 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=70.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||+|..|+.+|..|++.+. +|+++++.+.+... +.+ .....+.
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~---~Vtlv~~~~~~~~~-~~~--------------------------~~~~~~~ 194 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIAS---EVHLIHRRDGFRAE-KIL--------------------------IKRLMDK 194 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCC---EEEEEEECCccCCC-HHH--------------------------HHHHHhh
Confidence 35799999999999999999999875 79999876542111 000 0122344
Q ss_pred HHHCCcEEEeCCcEEEEeCCCc---EEEeCCC------eEEEeccEEeccCCCCCc
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNSG------KLLKYGSLIVATGCTASR 176 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~---~v~~~~g------~~~~yd~lVlAtG~~~~~ 176 (469)
+++.+++++.+..+.++..+.. .|++.++ +++++|.||+++|.+|..
T Consensus 195 l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~ 250 (321)
T PRK10262 195 VENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNT 250 (321)
T ss_pred ccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccCh
Confidence 5678999999999999987642 3444322 369999999999988753
No 250
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.88 E-value=7.5e-05 Score=76.04 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=31.0
Q ss_pred cEEEEcCcHHHHHHHHHHHHcC-CCCCcEEEEcCCCCC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYA 89 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~vie~~~~~ 89 (469)
||||||+|.||++||.++++.| . +|+|+|+.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~---~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAA---NVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCc---cEEEEecCCCC
Confidence 7999999999999999999998 6 79999998753
No 251
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.87 E-value=5.4e-05 Score=78.93 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=33.6
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
....+||||||+|.||++||.++++.|. +|+|+|+.+.
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~---~VilleK~~~ 50 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGR---RVLVVTKAAL 50 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCC---eEEEEEccCC
Confidence 3456899999999999999999999876 7999999764
No 252
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.86 E-value=7.9e-05 Score=79.04 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY 88 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~~~ 88 (469)
...+||+||||||+||++|..|+++ |. +++|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi---~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI---TTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCC---cEEEEEcCCC
Confidence 4578999999999999999999995 87 7999998864
No 253
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=4.2e-05 Score=80.44 Aligned_cols=40 Identities=30% Similarity=0.205 Sum_probs=33.0
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
...+||+|||+|.||++||.++++.|..+.+|+|+|+.+.
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 3457999999999999999999998721138999998764
No 254
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.86 E-value=1.4e-05 Score=70.40 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=33.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
.-||+|||+|||||+||++|++.|. +|+++|+...++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~---kV~i~E~~ls~G 66 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGL---KVAIFERKLSFG 66 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCc---eEEEEEeecccC
Confidence 4699999999999999999999987 899999987654
No 255
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.85 E-value=3.7e-05 Score=81.15 Aligned_cols=97 Identities=21% Similarity=0.164 Sum_probs=67.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH-
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW- 129 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (469)
.++++|||||+.|+..|..|++.|. +|++|+..+... |.+ +.... ......
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~---eVTLIe~~~~ll---~~~--------d~eis--------------~~l~~~l 363 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS---EVVSFEYSPQLL---PLL--------DADVA--------------KYFERVF 363 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccc---ccC--------CHHHH--------------HHHHHHH
Confidence 4689999999999999999999886 899999876421 000 00000 112222
Q ss_pred HHHCCcEEEeCCcEEEEeCCC--c--EEEeC-------CC--------eEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITN-------SG--------KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~--~--~v~~~-------~g--------~~~~yd~lVlAtG~~~~ 175 (469)
+++.+|+++.++.|..++..+ . .+.+. ++ +++++|.|++|||.+|.
T Consensus 364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 356899999999999997654 2 23222 11 36999999999998876
No 256
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.84 E-value=9.1e-05 Score=76.95 Aligned_cols=82 Identities=27% Similarity=0.377 Sum_probs=67.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeEE
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASIK 254 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v~ 254 (469)
..+++|||||+.|+.+|.++++.|.++. .+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 4589999999999999999999988775 23566778899999999999
Q ss_pred EEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165 255 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290 (469)
Q Consensus 255 ~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 290 (469)
++...+ +. ..+.+.+|+++.+|.||+|+|.+|..
T Consensus 291 ~I~~~~-~~-~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAA-GL-IEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecC-Ce-EEEEECCCCEEEcCEEEECCCCCcCC
Confidence 998643 22 35677888899999999999998753
No 257
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=5.8e-05 Score=79.57 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=31.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
..+||||||+|.||++||.++++.|. +|+|||+..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~---~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGL---KTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccC
Confidence 45899999999999999999999876 799999875
No 258
>PRK07538 hypothetical protein; Provisional
Probab=97.84 E-value=5.4e-05 Score=76.47 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=30.8
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
||+|||||+||+++|..|++.|+ +|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence 79999999999999999999998 7999999764
No 259
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.83 E-value=7.2e-05 Score=78.75 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
..+||||||+|.||++||.++++. . +|+|+|+.+
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~---~VilleK~~ 37 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-A---RTAVLTKLY 37 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-C---CEEEEeCCC
Confidence 457999999999999999999875 4 799999975
No 260
>PLN02546 glutathione reductase
Probab=97.83 E-value=5.8e-05 Score=78.56 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=69.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++|+|||||+.|+..|..|.+.+. +|+|+++.+... +.+ +... .....+.
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~---~Vtlv~~~~~il---~~~--------d~~~--------------~~~l~~~ 302 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKS---DVHVFIRQKKVL---RGF--------DEEV--------------RDFVAEQ 302 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeccccc---ccc--------CHHH--------------HHHHHHH
Confidence 35799999999999999999998875 899998765320 000 0000 0123466
Q ss_pred HHHCCcEEEeCCcEEEEeCC-Cc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165 130 YKEKGIEMIYQDPVTSIDIE-KQ--TLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~-~~--~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
+++.||+++.++.+..+... +. .+.+.+++...+|.+++|+|.+|..
T Consensus 303 L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 303 MSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 78899999999999888642 22 3444555545589999999988763
No 261
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=7e-05 Score=78.49 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
..+||||||+|.||++||.++++.|. +|+|+|+.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~---~V~lveK~~ 38 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGF---KVAVISKVF 38 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCC---cEEEEEccC
Confidence 45799999999999999999999876 799999875
No 262
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.82 E-value=1.6e-05 Score=70.29 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=30.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
..+||+|||||||||+||.+|++.|+ +|+++|+...++
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~---kV~v~E~~~~~G 53 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGL---KVAVIERKLSPG 53 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-B
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCC---eEEEEecCCCCC
Confidence 45899999999999999999999988 799999986543
No 263
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.82 E-value=3.5e-05 Score=69.30 Aligned_cols=87 Identities=24% Similarity=0.419 Sum_probs=65.6
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe----------------------------eeH-----HH---HHHcCcEEEcCCe
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------RYE-----QL---YQQNGVKFVKGAS 252 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------~~~-----~~---l~~~gV~~~~~~~ 252 (469)
+|+|||||+.|+.+|..|++.+.++. ... +. +...+++++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 58999999999999999999988886 111 22 3678999999999
Q ss_pred EEEEEeCCCC------cEEEEEcCCCCEEeCCEEEEccCCccCCchhhh
Q 012165 253 IKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 295 (469)
Q Consensus 253 v~~i~~~~~~------~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~ 295 (469)
+.+++..... .+......++.++.+|.+|+|+|..|+...++.
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g 129 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPG 129 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTT
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCC
Confidence 9999864331 122234556778999999999999887554443
No 264
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.82 E-value=5.8e-06 Score=79.57 Aligned_cols=100 Identities=22% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcC-----------CCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHG-----------MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g-----------~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (469)
.-++|||||||.|+..|.+|...- ..+.+||+||..++.. +.+ + .++
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL---~mF--------d---krl-------- 275 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL---NMF--------D---KRL-------- 275 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH---HHH--------H---HHH--------
Confidence 357999999999999999998631 1245789998876420 000 0 011
Q ss_pred CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCC
Q 012165 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~ 175 (469)
.....+.+.+.+|++..++.|..++.+.-.+.+.+| ++++|.-||.|||..++
T Consensus 276 ---~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 276 ---VEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred ---HHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc
Confidence 123456678889999999899888776655555555 47999999999998876
No 265
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.81 E-value=8.1e-05 Score=78.40 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
...+||||||+|.||++||.++++.|. +|+|||+..
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~vleK~~ 45 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGL---SVAVLSKVF 45 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence 345799999999999999999999876 799999974
No 266
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.81 E-value=5.9e-05 Score=79.31 Aligned_cols=33 Identities=33% Similarity=0.357 Sum_probs=30.3
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
||||||+|.||++||..+++.|. +|+|+|+.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~---~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGL---NTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence 79999999999999999999986 7999999764
No 267
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.80 E-value=0.00012 Score=77.62 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
..+||||||+|.||++||.++++.|. +|+|||+..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~---~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGY---NVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---cEEEEecCC
Confidence 45799999999999999999999887 799999754
No 268
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.79 E-value=7.7e-05 Score=78.42 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=32.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
..+||||||+|.||++||.++++.+. ..+|+|+|+...
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~-g~~V~lleK~~~ 40 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANP-NLKIALISKVYP 40 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence 34799999999999999999998763 448999999753
No 269
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.78 E-value=4.2e-05 Score=71.60 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=38.4
Q ss_pred hHHHHCCcEEEeCCcEEEEeCC-----CcEEEeCCCeEEEeccEEeccCCCCC
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
+.+++.|+.++.+..|..+... ...|.+.+|..+.++++|+++|+.-.
T Consensus 161 ~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~ 213 (399)
T KOG2820|consen 161 DKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN 213 (399)
T ss_pred HHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence 4467789999999888887632 23678889999999999999998743
No 270
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.77 E-value=0.00018 Score=67.68 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=33.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE 92 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~ 92 (469)
.+.+|.|||+|.+||+||..|.++- +||++|.+...+.+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~rh----dVTLfEA~~rlGGh 45 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRRH----DVTLFEADRRLGGH 45 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhccc----ceEEEeccccccCc
Confidence 4568999999999999999998863 79999999887654
No 271
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.76 E-value=9e-05 Score=77.75 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=31.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
.+||+|||+|.||++||.++++.+. ..+|+|+|+...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~-g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANP-HLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence 4799999999999999999998753 458999999754
No 272
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.72 E-value=4.2e-05 Score=78.08 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=38.0
Q ss_pred cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165 46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (469)
Q Consensus 46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~ 91 (469)
+..+++++|+|||||+|||+||++|.+.|+ +|+|+|..+..+.
T Consensus 10 ~~~~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdRvGG 52 (501)
T KOG0029|consen 10 PEAGKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDRVGG 52 (501)
T ss_pred ccccCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCCcCc
Confidence 345677899999999999999999999998 7999999987653
No 273
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.63 E-value=0.00026 Score=72.41 Aligned_cols=95 Identities=26% Similarity=0.277 Sum_probs=68.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++|+|||||..|+.+|..|.+.|.+ +|++++...... ++. . ....+.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~--~Vtlv~~~~~~~-----~~~------~------------------~~~~~~ 320 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAE--SVTIVYRRGREE-----MPA------S------------------EEEVEH 320 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCC--eEEEeeecCccc-----CCC------C------------------HHHHHH
Confidence 457999999999999999999998753 799998654210 000 0 012355
Q ss_pred HHHCCcEEEeCCcEEEEeCCCc---EEEeC-------------------CCeEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQ---TLITN-------------------SGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~---~v~~~-------------------~g~~~~yd~lVlAtG~~~~ 175 (469)
+++.||+++.++.+..+..++. .|++. ++.++++|.||+|+|..|.
T Consensus 321 ~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 321 AKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred HHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence 6788999999988888865542 13321 2347999999999998875
No 274
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.61 E-value=0.00013 Score=76.23 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=37.1
Q ss_pred CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165 302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
-|||.||.+.||++|++||+|+|+.......++.. -.+...+...|+.+++.+.
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~-gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLA-SNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccCCCcccchH-HHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999753221112221 2244556666777777764
No 275
>PRK07208 hypothetical protein; Provisional
Probab=97.60 E-value=7.8e-05 Score=76.84 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~ 91 (469)
+++++|+|||||++||+||..|.++|+ +|+|+|+.+..+.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~---~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGY---PVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCCCc
Confidence 566899999999999999999999987 7999999987653
No 276
>PRK06834 hypothetical protein; Provisional
Probab=97.59 E-value=0.00038 Score=71.65 Aligned_cols=81 Identities=27% Similarity=0.408 Sum_probs=66.8
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
..|+|||+|+.|+-+|..|++.|.++.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 479999999999999999999998876
Q ss_pred ---------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165 235 ---------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290 (469)
Q Consensus 235 ---------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 290 (469)
.+.+.+++.|++++.+++++.++.++++ + .+++.+|+++.+|+||.|.|..+..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCc
Confidence 2334556779999999999999865443 3 4667788899999999999998753
No 277
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.57 E-value=0.00042 Score=68.36 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=66.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++++|||+|+.|+.+|..|.+.|.. +|+|++..+.. . . + . .....+.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~--~Vtvi~~~~~~--~-~--------~---~---------------~~~~~~~l 220 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAE--KVYLAYRRTIN--E-A--------P---A---------------GKYEIERL 220 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeecchh--h-C--------C---C---------------CHHHHHHH
Confidence 46899999999999999999988752 49999764321 0 0 0 0 01123457
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEe--------------------CCCeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLIT--------------------NSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~--------------------~~g~~~~yd~lVlAtG~~~~ 175 (469)
++++++++.+..+.+++.+++ .|.+ .++..+++|.||+|+|.+|.
T Consensus 221 ~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~ 287 (352)
T PRK12770 221 IARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPT 287 (352)
T ss_pred HHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCC
Confidence 889999999888888875543 2221 12357999999999999875
No 278
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.56 E-value=0.00042 Score=69.46 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=40.1
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
+.+++.|++++.++++++++.+++ .+ .+++++|+++.+|+||.|.|..+.
T Consensus 121 ~~~~~~gv~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 121 AALHAAGVQLHCPARVVALEQDAD-RV-RLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHhCCCEEEcCCeEEEEEecCC-eE-EEEECCCCEEEeCEEEEecCCCch
Confidence 345567999999999999986433 33 477888889999999999999874
No 279
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.56 E-value=0.00069 Score=69.57 Aligned_cols=105 Identities=17% Similarity=0.249 Sum_probs=66.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++|+|||||..|+-+|..+.+.|.. +|++++..+...... . . ...++.+. .....+.
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~--~Vt~~~~~~~~~~~~-------~-~----~~~~~~~~-------~~~~~~~ 338 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAK--SVTQRDIMPMPPSRR-------N-K----NNPWPYWP-------MKLEVSN 338 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCC--eEEEccccCCCcccc-------c-c----ccCCcccc-------hHHHHHH
Confidence 457999999999999999999888742 688776554321110 0 0 00010000 0002345
Q ss_pred HHHCCcEEEeCCcEEEEeCCCcEE---E-----eCCC---------eEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQTL---I-----TNSG---------KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v---~-----~~~g---------~~~~yd~lVlAtG~~~~ 175 (469)
+.+.|++++++..+.++..++..| . ..+| .++++|.||+|+|..|.
T Consensus 339 ~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~ 401 (471)
T PRK12810 339 AHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGP 401 (471)
T ss_pred HHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCC
Confidence 677899999998888887533322 1 2122 46999999999998765
No 280
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.52 E-value=5.7e-05 Score=74.28 Aligned_cols=90 Identities=21% Similarity=0.407 Sum_probs=60.1
Q ss_pred HHhCCCeEe------eeHHHHHHc-CcEEEcCCeEEEEEeCCCCc-EEEEE-cC--CCCEEeCCEEEEccCCccCCchhh
Q 012165 226 AVGWKLDTT------RYEQLYQQN-GVKFVKGASIKNLEAGSDGR-VAAVK-LE--DGSTIDADTIVIGIGAKPTVSPFE 294 (469)
Q Consensus 226 l~~~g~~v~------~~~~~l~~~-gV~~~~~~~v~~i~~~~~~~-v~~v~-~~--~g~~i~~D~vi~a~G~~p~~~~~~ 294 (469)
-...|.+|. .+.+.+++. |++++++++|++|++.+++. ...+. +. +..++.++.|+++.|-..- .+++
T Consensus 171 ~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL-~LLq 249 (488)
T PF06039_consen 171 RVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL-PLLQ 249 (488)
T ss_pred ecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH-HHHH
Confidence 345566665 344445555 99999999999999887773 22221 22 3357999999999987753 6788
Q ss_pred hcCCcc--cCCCEEeC-CCCCCCCC
Q 012165 295 RVGLNS--SVGGIQVD-GQFRTRMP 316 (469)
Q Consensus 295 ~~gl~~--~~g~i~Vd-~~~~t~~~ 316 (469)
.+|++. .-|+.+|. ..+++..|
T Consensus 250 ksgi~e~~gyggfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 250 KSGIPEGKGYGGFPVSGQFLRCKNP 274 (488)
T ss_pred HcCChhhcccCCCcccceEEecCCH
Confidence 888853 34556665 35555433
No 281
>PRK08244 hypothetical protein; Provisional
Probab=97.52 E-value=0.0005 Score=71.13 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=63.7
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
..|+|||+|+.|+-+|..|++.|.++.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 369999999999999999999998886
Q ss_pred ----------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-CEEeCCEEEEccCCccC
Q 012165 235 ----------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 ----------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.+++.|++++.++++++++.++++....+...+| +++.+|+||.|.|.+..
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 23344566799999999999998654443222333356 47999999999999764
No 282
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=7.9e-05 Score=74.28 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=29.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
..+||+|||||.||..||...+|.|. +..|+.-+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~---ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGA---KTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCC---eEEEEEcCC
Confidence 34899999999999999999999987 566665443
No 283
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.51 E-value=0.00025 Score=71.89 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~ 91 (469)
+..+||+|||||+.|+.+|..++.+|+ +|+|+|+.+....
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl---~v~LvE~~D~AsG 49 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGL---KVALVEKGDLASG 49 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCC---eEEEEecCcccCc
Confidence 477999999999999999999999999 7999999987543
No 284
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.51 E-value=0.0029 Score=64.54 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=72.2
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------------------------- 234 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------------------------- 234 (469)
..++|+|||+|++|+-+|..|.+.|.+++
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 35889999999999999999998887765
Q ss_pred ---------------------------eeHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEcCCC--C--EEeCCEEE
Q 012165 235 ---------------------------RYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDG--S--TIDADTIV 281 (469)
Q Consensus 235 ---------------------------~~~~~l~~~gV~--~~~~~~v~~i~~~~~~~v~~v~~~~g--~--~i~~D~vi 281 (469)
.+++..+..|+. ++++++|++++..+ +. ..|.+.++ . +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~-w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GK-WRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-Ce-EEEEEEcCCCceEEEEcCEEE
Confidence 112222345777 78899999998643 32 23544432 2 46799999
Q ss_pred EccC--CccCCchhhhcCCcccCCCEEeCCCCCC----CCCceEEecc
Q 012165 282 IGIG--AKPTVSPFERVGLNSSVGGIQVDGQFRT----RMPGIFAIGD 323 (469)
Q Consensus 282 ~a~G--~~p~~~~~~~~gl~~~~g~i~Vd~~~~t----~~~~Vfa~GD 323 (469)
+|+| ..|+.+-+.+ ++.-.|.+.--..+++ ...+|.++|-
T Consensus 167 vAtG~~~~P~~P~ipG--~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~ 212 (461)
T PLN02172 167 VCNGHYTEPNVAHIPG--IKSWPGKQIHSHNYRVPDPFKNEVVVVIGN 212 (461)
T ss_pred EeccCCCCCcCCCCCC--cccCCceEEEecccCCccccCCCEEEEECC
Confidence 9999 4666443332 2211232222222333 3467888883
No 285
>PRK07236 hypothetical protein; Provisional
Probab=97.50 E-value=0.00067 Score=67.83 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=62.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------eeHHHHHHc-----------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------RYEQLYQQN----------------------- 243 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------~~~~~l~~~----------------------- 243 (469)
..+|+|||||+.|+.+|..|++.|.+++ ...+.|++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 4789999999999999999999998887 011222222
Q ss_pred --------------------------CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 244 --------------------------GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 244 --------------------------gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
+++++.++++++++.+++ .+ .+.+++|+++.+|+||.|-|....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD-RV-TARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC-eE-EEEECCCCEEEeCEEEECCCCCch
Confidence 245888999999986533 34 578899999999999999998654
No 286
>PLN02463 lycopene beta cyclase
Probab=97.49 E-value=0.00064 Score=68.88 Aligned_cols=79 Identities=28% Similarity=0.381 Sum_probs=62.0
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
-+|+|||+|+.|+.+|..|++.|.+|.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 479999999999999999999888775
Q ss_pred ----------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 235 ----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 ----------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.+.+.|++++ ..+|++++..+ +. ..|.+++|+++.+|+||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~-~~-~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE-SK-SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC-Ce-EEEEECCCCEEEcCEEEECcCCCcC
Confidence 12233355789987 45888888643 33 3578889989999999999998764
No 287
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.49 E-value=6.8e-05 Score=81.41 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=30.3
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
+|+|||||+||+++|..|++.+. ..+|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~-G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDP-AHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCC-CCeEEEEecCCC
Confidence 79999999999999999999831 238999999875
No 288
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.49 E-value=0.00037 Score=64.70 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=36.3
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~ 91 (469)
....+|+||||||+.|++.|++|.-+- |..+|.|+|++..+.-
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrh-p~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRH-PSLKVAVLEKEKSLAV 87 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcC-CCceEEeeehhhhhce
Confidence 456799999999999999999998764 4679999999987643
No 289
>PRK09126 hypothetical protein; Provisional
Probab=97.48 E-value=0.00053 Score=68.68 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=38.2
Q ss_pred HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165 242 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290 (469)
Q Consensus 242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 290 (469)
..|++++.++++++++..+ +.+ .|.+++|+++.+|+||.|.|..+..
T Consensus 123 ~~g~~i~~~~~v~~~~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDD-DGA-QVTLANGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred CCCcEEEcCCeEEEEEEcC-CeE-EEEEcCCCEEEeCEEEEeCCCCchh
Confidence 4689999999999998643 333 5778899999999999999987653
No 290
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0022 Score=61.39 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=61.9
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------eeHHHHHHcCcEEEcCCe
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------RYEQLYQQNGVKFVKGAS 252 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------~~~~~l~~~gV~~~~~~~ 252 (469)
..++|||+|+.|+-.|-++.+.+.++. .+.+..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 469999999999999999999987622 344555567888887 56
Q ss_pred EEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165 253 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290 (469)
Q Consensus 253 v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 290 (469)
+.+++..++ ...|.+.+|+ +.++.||+|+|..+..
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence 777774322 5578888887 9999999999998753
No 291
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.48 E-value=0.0007 Score=69.04 Aligned_cols=94 Identities=23% Similarity=0.319 Sum_probs=65.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++|+|||||..|+-+|..|++.|. +|++++..+... . ... ....+.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~---~Vtlv~~~~~~~-----~-----------~~~-------------~~~~~~ 318 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGA---EVHCLYRRTRED-----M-----------TAR-------------VEEIAH 318 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEeecCccc-----C-----------CCC-------------HHHHHH
Confidence 35799999999999999999999986 699998664310 0 000 012245
Q ss_pred HHHCCcEEEeCCcEEEEeCC-Cc---EEEeC---------CC-----------eEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIE-KQ---TLITN---------SG-----------KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~-~~---~v~~~---------~g-----------~~~~yd~lVlAtG~~~~ 175 (469)
+++.||+++.++.+.++..+ +. .|++. +| .++++|.||+|+|..|.
T Consensus 319 l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~ 388 (449)
T TIGR01316 319 AEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN 388 (449)
T ss_pred HHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC
Confidence 67889999988888887532 22 12221 22 36899999999998875
No 292
>PRK05868 hypothetical protein; Validated
Probab=97.47 E-value=0.00076 Score=67.03 Aligned_cols=81 Identities=25% Similarity=0.268 Sum_probs=64.2
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
++|+|||+|+.|+.+|..|++.|.+++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 479999999999999999999998886
Q ss_pred ------------------------eeHHHHH---HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165 235 ------------------------RYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 235 ------------------------~~~~~l~---~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~ 287 (469)
.+.+.+. ..|+++++++++++++.+ ++.+ .+.++||+++.+|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCCC
Confidence 0112222 358999999999999854 3334 5888999999999999999987
Q ss_pred cCC
Q 012165 288 PTV 290 (469)
Q Consensus 288 p~~ 290 (469)
...
T Consensus 160 S~v 162 (372)
T PRK05868 160 SNV 162 (372)
T ss_pred chH
Confidence 653
No 293
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.46 E-value=0.00092 Score=67.74 Aligned_cols=88 Identities=24% Similarity=0.422 Sum_probs=66.0
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
-.|+|||+|+.|+-+|..|++.|.+|.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 479999999999999999998888775
Q ss_pred ---------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165 235 ---------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 235 ---------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~ 287 (469)
.+.+..++.|++++.++.++++... ++.+..+. .+|.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 1233445679999999999998754 45554444 567789999999999985
Q ss_pred cCCchhhhcCCc
Q 012165 288 PTVSPFERVGLN 299 (469)
Q Consensus 288 p~~~~~~~~gl~ 299 (469)
. .+.+.+++.
T Consensus 164 s--~l~~~lgl~ 173 (428)
T PRK10157 164 S--ILAEKLGMA 173 (428)
T ss_pred H--HHHHHcCCC
Confidence 3 344555543
No 294
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.45 E-value=0.00025 Score=73.12 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=56.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++|+|||+|.+|+++|..|+++|+ +|+++|..+... .....+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~~~~--------------------------------~~~~~~~ 59 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGDDER--------------------------------HRALAAI 59 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCchhh--------------------------------hHHHHHH
Confidence 34689999999999999999999987 799998653200 0112345
Q ss_pred HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
+++.|++++.+..+. ....+|.+|+++|..|.
T Consensus 60 l~~~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 60 LEALGATVRLGPGPT--------------LPEDTDLVVTSPGWRPD 91 (480)
T ss_pred HHHcCCEEEECCCcc--------------ccCCCCEEEECCCcCCC
Confidence 677899998875432 01458999999998876
No 295
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.44 E-value=0.00015 Score=74.07 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=33.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~ 91 (469)
++|+|||||+|||+||..|++.|. ..+|+|+|+++..+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~-~~~V~vlEa~~~~GG 39 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGP-DADITLLEASDRLGG 39 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCC-CCCEEEEEcCCCCcc
Confidence 379999999999999999999873 348999999987653
No 296
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.42 E-value=0.00089 Score=67.15 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=63.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------- 234 (469)
..+|+|||+|+.|+-+|..|++.|.+++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 5689999999999999999999988876
Q ss_pred ------------------------------eeHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEc
Q 012165 235 ------------------------------RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 283 (469)
Q Consensus 235 ------------------------------~~~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a 283 (469)
.+.+.+.+. +++++.++.+++++.+ ++.+ .+.+.+|+++.+|+||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGV-TVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCce-EEEEcCCCEEecCEEEEC
Confidence 011112233 5899999999999854 3334 477888989999999999
Q ss_pred cCCccCC
Q 012165 284 IGAKPTV 290 (469)
Q Consensus 284 ~G~~p~~ 290 (469)
.|.....
T Consensus 162 dG~~S~~ 168 (396)
T PRK08163 162 DGVKSVV 168 (396)
T ss_pred CCcChHH
Confidence 9987643
No 297
>PRK07588 hypothetical protein; Provisional
Probab=97.41 E-value=0.00079 Score=67.43 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=37.8
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165 243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290 (469)
Q Consensus 243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 290 (469)
.|+++++++++++++..+ +.+ .+.+++|+.+.+|+||-|-|.....
T Consensus 115 ~~v~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 115 GQVETIFDDSIATIDEHR-DGV-RVTFERGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred cCeEEEeCCEEeEEEECC-CeE-EEEECCCCEEEeCEEEECCCCCccc
Confidence 479999999999998653 334 4788999999999999999987654
No 298
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.41 E-value=0.00082 Score=67.60 Aligned_cols=59 Identities=25% Similarity=0.428 Sum_probs=43.8
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCc
Q 012165 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 299 (469)
Q Consensus 237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~ 299 (469)
.+.+++.|++++.++++++++.+++ .+ .+.+++|+++.+|+||.|.|.... +.+.+++.
T Consensus 118 ~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vI~AdG~~S~--vr~~~g~~ 176 (403)
T PRK07333 118 RKRAEALGIDLREATSVTDFETRDE-GV-TVTLSDGSVLEARLLVAADGARSK--LRELAGIK 176 (403)
T ss_pred HHHHHhCCCEEEcCCEEEEEEEcCC-EE-EEEECCCCEEEeCEEEEcCCCChH--HHHHcCCC
Confidence 3445567999999999999985433 33 577889989999999999998764 33444543
No 299
>PLN02529 lysine-specific histone demethylase 1
Probab=97.41 E-value=9.8e-05 Score=78.57 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=41.8
Q ss_pred cCCcccccccccccccccCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 29 HSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
|.+||.... ..+.....++|+|||||+||++||..|+++|+ +|+|+|+.+..+
T Consensus 144 c~vnp~~~~------~~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G 196 (738)
T PLN02529 144 FGVSPSFAS------PIPEEGTEGSVIIVGAGLAGLAAARQLLSFGF---KVVVLEGRNRPG 196 (738)
T ss_pred eeecccccC------CCCcccCCCCEEEECcCHHHHHHHHHHHHcCC---cEEEEecCccCc
Confidence 777765322 12334567899999999999999999999998 799999987654
No 300
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.41 E-value=0.001 Score=63.50 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=60.7
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------ 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------ 234 (469)
.|+|||+|+.|+-+|..|++.|.+|.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 58999999999999999999887775
Q ss_pred --------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CCCEEeCCEEEEccCCcc
Q 012165 235 --------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 235 --------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vi~a~G~~p 288 (469)
.+.+.+++.|++++.+++++++...++ .+ .+.+. ++.++.+|.||.|.|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence 234455668999999999999875433 33 23333 345799999999999865
No 301
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.40 E-value=0.00017 Score=71.77 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=38.8
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.+.|++++.++++++++.. ++.+ .+.+++| .+.+|.||+|+|....
T Consensus 156 ~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 156 LRLAREAGAELLFNEPVTAIEAD-GDGV-TVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHCCCEEECCCEEEEEEee-CCeE-EEEeCCC-EEEeeEEEEecCcchh
Confidence 34566789999999999999864 3333 5777777 7999999999997643
No 302
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.38 E-value=0.00034 Score=77.17 Aligned_cols=74 Identities=27% Similarity=0.260 Sum_probs=58.8
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEA 258 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~ 258 (469)
.+++|+|||+|+.|+.+|..|++.|.+|+ ...+.+++.||++++++.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 47999999999999999999999999998 223567788999998854311
Q ss_pred CCCCcEEEEEcCCCCEEeCCEEEEccCCc-cC
Q 012165 259 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT 289 (469)
Q Consensus 259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~-p~ 289 (469)
.+.+++.....+|.||+|+|.. |.
T Consensus 382 -------dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 382 -------TATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence 3556666566899999999984 54
No 303
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.37 E-value=0.00038 Score=66.39 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (469)
..+++++|||||.-||..+.-..+.|- +||+||-.+...- ..+. ++ ......
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGs---eVT~VEf~~~i~~-----------~mD~---Ei-----------sk~~qr 260 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGS---EVTVVEFLDQIGG-----------VMDG---EI-----------SKAFQR 260 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCC---eEEEEEehhhhcc-----------ccCH---HH-----------HHHHHH
Confidence 446899999999999999999889886 8999995543210 0000 00 122456
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCc---EEEeCC---C--eEEEeccEEeccCCCCC
Q 012165 129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~~---~v~~~~---g--~~~~yd~lVlAtG~~~~ 175 (469)
.+.+.+++|.++++|....++.. .|.+++ + +++++|.|++++|-+|.
T Consensus 261 ~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 261 VLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred HHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 67889999999999999987654 344432 2 46999999999998875
No 304
>PLN02568 polyamine oxidase
Probab=97.36 E-value=0.00025 Score=73.58 Aligned_cols=45 Identities=20% Similarity=0.148 Sum_probs=36.3
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHHHcCC--CCCcEEEEcCCCCCCC
Q 012165 47 FANENREFVIVGGGNAAGYAARTFVEHGM--ADGRLCIVSKEAYAPY 91 (469)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~--~~~~V~vie~~~~~~~ 91 (469)
|+++.++|+|||||+|||+||..|.+.|. +..+|+|+|+....+.
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 34556899999999999999999999871 1237999999887653
No 305
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.36 E-value=0.00023 Score=71.75 Aligned_cols=103 Identities=29% Similarity=0.364 Sum_probs=69.1
Q ss_pred CCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe--
Q 012165 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-- 234 (469)
Q Consensus 157 ~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-- 234 (469)
.+..+.++.|..+.|........+++. .++ ...+++|+|||+|+.|+.+|..|++.|++|+
T Consensus 90 ~~~~v~i~~le~~i~d~~~~~g~i~~~-~~~----------------~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~ 152 (457)
T COG0493 90 EELPVNIGALERAIGDKADREGWIPGE-LPG----------------SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVF 152 (457)
T ss_pred CCCchhhhhHHHHHhhHHHHhCCCCCC-CCC----------------CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEe
Confidence 344567777777777553322222221 111 1246899999999999999999999999998
Q ss_pred -------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165 235 -------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 235 -------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~ 287 (469)
...+.|++.|++|++++.+-. .+++++= .-++|.|++++|..
T Consensus 153 e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~----------~it~~~L-~~e~Dav~l~~G~~ 219 (457)
T COG0493 153 ERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR----------DITLEEL-LKEYDAVFLATGAG 219 (457)
T ss_pred CCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC----------cCCHHHH-HHhhCEEEEecccc
Confidence 345778899999999875531 0122211 23459999999975
No 306
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.34 E-value=0.00062 Score=74.51 Aligned_cols=72 Identities=31% Similarity=0.363 Sum_probs=55.6
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEA 258 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~ 258 (469)
.+++|+|||+|+.|+.+|..|++.|.+|+ ...+.+++.||++++++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~- 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT- 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence 46899999999999999999999999887 1124567789999998765 222
Q ss_pred CCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 259 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
+.+.....+|.||+|+|..+.
T Consensus 616 ----------le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 ----------VEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred ----------hhhheeccCCEEEECcCCCCC
Confidence 223334569999999999864
No 307
>PRK07190 hypothetical protein; Provisional
Probab=97.34 E-value=0.0012 Score=67.90 Aligned_cols=79 Identities=22% Similarity=0.371 Sum_probs=63.5
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
..|+|||+|++|+-+|..|++.|.++.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 479999999999999999999988775
Q ss_pred ----------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165 235 ----------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286 (469)
Q Consensus 235 ----------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~ 286 (469)
.+.+.+++.|++++.++++++++.++++. .+.+.+|+++.+++||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCC
Confidence 11233456799999999999998765543 355677889999999999998
Q ss_pred cc
Q 012165 287 KP 288 (469)
Q Consensus 287 ~p 288 (469)
+.
T Consensus 164 ~S 165 (487)
T PRK07190 164 RS 165 (487)
T ss_pred CH
Confidence 65
No 308
>PLN02268 probable polyamine oxidase
Probab=97.34 E-value=0.00024 Score=72.31 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=34.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE 92 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~ 92 (469)
++|+|||||+|||+||..|.+.|+ +|+|+|+.+..+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASF---KVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCce
Confidence 479999999999999999999887 79999999887643
No 309
>PRK06184 hypothetical protein; Provisional
Probab=97.33 E-value=0.0012 Score=68.39 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=62.9
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
-+|+|||+|+.|+-+|..|++.|.+++
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 469999999999999999999999886
Q ss_pred ------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCCEEeCCEEE
Q 012165 235 ------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV 281 (469)
Q Consensus 235 ------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~~D~vi 281 (469)
.+.+.+++.|++++.++++++++.++++ + .+.+ .+++++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEE
Confidence 1223345679999999999999865444 3 3444 556789999999
Q ss_pred EccCCcc
Q 012165 282 IGIGAKP 288 (469)
Q Consensus 282 ~a~G~~p 288 (469)
.|.|...
T Consensus 162 gADG~~S 168 (502)
T PRK06184 162 GADGGRS 168 (502)
T ss_pred ECCCCch
Confidence 9999875
No 310
>PLN02785 Protein HOTHEAD
Probab=97.33 E-value=0.0037 Score=65.64 Aligned_cols=36 Identities=19% Similarity=0.462 Sum_probs=31.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
...+|++|||||.||+.+|.+|.+ .. +|+|||+.+.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~---~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NF---SVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CC---cEEEEecCCC
Confidence 346999999999999999999998 34 7999999864
No 311
>PLN02985 squalene monooxygenase
Probab=97.32 E-value=0.0003 Score=72.69 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=34.5
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
.....+||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~---~V~vlEr~~~ 77 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGR---RVHVIERDLR 77 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCC---eEEEEECcCC
Confidence 44567899999999999999999999987 7999998754
No 312
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.31 E-value=0.00027 Score=70.00 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=31.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
+.||+|||||++|+.+|..|++.|+ +|+|+|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence 4699999999999999999999998 7999997654
No 313
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.31 E-value=0.00051 Score=70.82 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=57.3
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 274 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~ 274 (469)
.+++++|+|+|.+|+++|..|.++|.+|+ .+.+.+++.||+++++..+. ..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~------------------~~ 76 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT------------------LP 76 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc------------------cc
Confidence 57899999999999999999999999987 12356778899998775332 12
Q ss_pred EeCCEEEEccCCccCCchhh
Q 012165 275 IDADTIVIGIGAKPTVSPFE 294 (469)
Q Consensus 275 i~~D~vi~a~G~~p~~~~~~ 294 (469)
..+|+||+++|..|+.+++.
T Consensus 77 ~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 77 EDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred CCCCEEEECCCcCCCCHHHH
Confidence 45899999999999988643
No 314
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.31 E-value=0.0018 Score=67.12 Aligned_cols=118 Identities=25% Similarity=0.335 Sum_probs=70.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------- 234 (469)
.|+|+|||+|++|+-.+..|.+.|.+++
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 3799999999999999999999998887
Q ss_pred --------eeHHHHHHcCc--EEEcCCeEEEEEeCCCC---cEEEEEcC-CC--CEEeCCEEEEccCCc--cCCchhhhc
Q 012165 235 --------RYEQLYQQNGV--KFVKGASIKNLEAGSDG---RVAAVKLE-DG--STIDADTIVIGIGAK--PTVSPFERV 296 (469)
Q Consensus 235 --------~~~~~l~~~gV--~~~~~~~v~~i~~~~~~---~v~~v~~~-~g--~~i~~D~vi~a~G~~--p~~~~~~~~ 296 (469)
.++...+..++ .++++++|.+++..++. ..-.|++. +| ++..+|.||+|+|.- |+.+.-.--
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~ 160 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP 160 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence 34445555555 57899999999875432 12245554 34 245689999999974 554320012
Q ss_pred CCcccCCCEEeCCCCCC----CCCceEEeccc
Q 012165 297 GLNSSVGGIQVDGQFRT----RMPGIFAIGDV 324 (469)
Q Consensus 297 gl~~~~g~i~Vd~~~~t----~~~~Vfa~GD~ 324 (469)
|++.=.|.+.-...++. ...+|-++|-.
T Consensus 161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g 192 (531)
T PF00743_consen 161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGG 192 (531)
T ss_dssp TGGGHCSEEEEGGG--TGGGGTTSEEEEESSS
T ss_pred hhhcCCeeEEccccCcChhhcCCCEEEEEeCC
Confidence 33332455554444443 34678887753
No 315
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.30 E-value=0.0011 Score=68.65 Aligned_cols=77 Identities=29% Similarity=0.476 Sum_probs=59.5
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
-.|+|||||+.|+++|..+++.|.+|.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 369999999999999999999888775
Q ss_pred --------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165 235 --------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286 (469)
Q Consensus 235 --------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~ 286 (469)
.+.+.+++ .|++++. ..+.++.. +++.+.+|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 11122233 4788754 46777764 366777899999999999999999994
No 316
>PRK12831 putative oxidoreductase; Provisional
Probab=97.30 E-value=0.0014 Score=67.07 Aligned_cols=94 Identities=26% Similarity=0.309 Sum_probs=63.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++|+|||||..|+-+|..|.+.|. +|+++...... .++ .. ....+.
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga---~Vtlv~r~~~~-----~m~-----------a~-------------~~e~~~ 327 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGA---EVHIVYRRSEE-----ELP-----------AR-------------VEEVHH 327 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCC---EEEEEeecCcc-----cCC-----------CC-------------HHHHHH
Confidence 45799999999999999999999986 69999765421 000 00 001123
Q ss_pred HHHCCcEEEeCCcEEEEeCC-CcE---EEeC------------------CC--eEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIE-KQT---LITN------------------SG--KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~-~~~---v~~~------------------~g--~~~~yd~lVlAtG~~~~ 175 (469)
+.+.|++++.++.+..+..+ +.. |.+. +| .++++|.||+|+|..|.
T Consensus 328 a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 397 (464)
T PRK12831 328 AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN 397 (464)
T ss_pred HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCC
Confidence 56779998888777777532 211 1110 12 25899999999998875
No 317
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.29 E-value=0.0014 Score=65.91 Aligned_cols=49 Identities=18% Similarity=0.349 Sum_probs=39.1
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+++.|++++.++++.+++.++++ + .|.+++|+++.+|+||.|.|....
T Consensus 121 ~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 121 RLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCch
Confidence 345568999999999999865443 3 477889989999999999998764
No 318
>PRK06753 hypothetical protein; Provisional
Probab=97.29 E-value=0.0015 Score=64.92 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=61.6
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------ 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------ 234 (469)
+|+|||||+.|+-+|..|++.|.+++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 69999999999999999999998886
Q ss_pred -----------------eeHHHHHH--cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 235 -----------------RYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 -----------------~~~~~l~~--~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.|.+ .+.++++++++++++.+ ++.+ .+.+++|+++.+|+||.|-|.+..
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchH
Confidence 11222222 24568889999999854 3444 578889999999999999997754
No 319
>PLN02576 protoporphyrinogen oxidase
Probab=97.29 E-value=0.00034 Score=72.46 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP 90 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~~~~~ 90 (469)
..++||+|||||++||+||.+|.+. |+ +|+|+|+++..+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~---~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGV---NVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCC---CEEEEecCCCCC
Confidence 3456899999999999999999998 77 799999998765
No 320
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.29 E-value=0.00029 Score=72.32 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=33.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHc----CCCCCcEEEEcCCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAP 90 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~----g~~~~~V~vie~~~~~~ 90 (469)
++||+|||||+|||+||..|.++ |+ +|+|+|+++..+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~---~v~vlE~~~r~G 42 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPV---ELTLVEASDRVG 42 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCC---cEEEEEcCCcCc
Confidence 46899999999999999999998 66 799999998765
No 321
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.28 E-value=0.00034 Score=68.75 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=35.4
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~ 91 (469)
....+|||||||+|||+||.+|.+.|+. +++|+|.++..+.
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIGG 59 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCc--eEEEEEeccccCc
Confidence 3446899999999999999999998875 8999999987653
No 322
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.28 E-value=0.0014 Score=65.40 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=36.3
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165 243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p 288 (469)
.|++++.++++++++.++++ + .+.+++|+++.+|+||.|.|...
T Consensus 119 ~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred CCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCCh
Confidence 48999999999999865443 3 47778888999999999999765
No 323
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.27 E-value=0.0012 Score=64.79 Aligned_cols=81 Identities=31% Similarity=0.434 Sum_probs=60.1
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------ 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------ 234 (469)
+|+|||+|+.|+-+|..|++.|.+|.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 68999999999999999999999987
Q ss_pred ---------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CC--CEEeCC
Q 012165 235 ---------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDAD 278 (469)
Q Consensus 235 ---------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~~D 278 (469)
.+.+.+++.|++++.++++..++.++++....+... +| +++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 334555678999999999999986655432223332 34 368999
Q ss_pred EEEEccCCccC
Q 012165 279 TIVIGIGAKPT 289 (469)
Q Consensus 279 ~vi~a~G~~p~ 289 (469)
+||-|-|....
T Consensus 163 lvVgADG~~S~ 173 (356)
T PF01494_consen 163 LVVGADGAHSK 173 (356)
T ss_dssp EEEE-SGTT-H
T ss_pred eeecccCcccc
Confidence 99999998764
No 324
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.27 E-value=0.00035 Score=68.86 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=32.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
++||+|||||+||+++|..|++.|. +|+|+|+.+..+
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~---~V~viEk~~~iG 37 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNK---RVLVVEKRNHIG 37 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC
Confidence 3699999999999999999998876 799999987654
No 325
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.26 E-value=0.00036 Score=72.27 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=34.3
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
++.++||+|||||+.|+++|+.|+++|. +|+|+|+.+.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~---~V~LlEk~d~ 40 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGL---KVLLCEKDDL 40 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCC---cEEEEECCCC
Confidence 4556899999999999999999999997 7999999864
No 326
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.26 E-value=0.00045 Score=67.24 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=42.6
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 285 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G 285 (469)
.+.+-+++.|-++.+...|++|..+ +|++.+|.++||+++....|+.-++
T Consensus 269 aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 269 AIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred HHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence 5667788999999999999999865 5888999999999999977776544
No 327
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.24 E-value=0.00036 Score=71.56 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=33.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCC---CCCcEEEEcCCCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEAYAPY 91 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~---~~~~V~vie~~~~~~~ 91 (469)
|++|+|||||+|||+||..|.+.+. ...+|+|+|+++..+.
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 4689999999999999999998742 1248999999987653
No 328
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.24 E-value=0.002 Score=64.69 Aligned_cols=88 Identities=22% Similarity=0.330 Sum_probs=69.6
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------ 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------ 234 (469)
.|+|||+|+.|.-+|..|++.|.+|.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~ 84 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV 84 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence 69999999999999999999998875
Q ss_pred ---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCc
Q 012165 235 ---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 299 (469)
Q Consensus 235 ---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~ 299 (469)
++.+..++.|++++.++.+..+..++++.+..+ ..++.++.++.||.|.|.... +.+.+++.
T Consensus 85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~--l~~~lg~~ 161 (396)
T COG0644 85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSA--LARKLGLK 161 (396)
T ss_pred CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchH--HHHHhCCC
Confidence 345667789999999999999987666655433 344478999999999998763 44444444
No 329
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.24 E-value=0.00038 Score=72.06 Aligned_cols=37 Identities=19% Similarity=0.423 Sum_probs=33.5
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
+..+||+|||||..|+++|+.|+++|. +|+|||+++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl---~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGL---SVLLCEQDDL 40 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCC
Confidence 456899999999999999999999998 7999999754
No 330
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.23 E-value=0.00037 Score=71.60 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
+..+||||||+|+||++||.++++.|. +|+|||+.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~---~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGA---SVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence 345899999999999999999999987 7999999863
No 331
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.22 E-value=0.0021 Score=67.45 Aligned_cols=83 Identities=25% Similarity=0.345 Sum_probs=62.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------- 234 (469)
..+|+|||+|+.|+-+|..|++.|.++.
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 3579999999999999999999998876
Q ss_pred ---------------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC-EEeCCEEEEccC
Q 012165 235 ---------------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIG 285 (469)
Q Consensus 235 ---------------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vi~a~G 285 (469)
.+.+.+++ .++++++++++++++.++++....+...+|+ ++.+|+||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 01122233 4799999999999986544433234444564 699999999999
Q ss_pred CccC
Q 012165 286 AKPT 289 (469)
Q Consensus 286 ~~p~ 289 (469)
....
T Consensus 183 ~~S~ 186 (547)
T PRK08132 183 ARSP 186 (547)
T ss_pred CCcH
Confidence 8875
No 332
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00037 Score=69.61 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=33.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~ 91 (469)
++|+|+|||.|||+||.+|+++|+ +|||.|..+..+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccCc
Confidence 479999999999999999999998 8999999987754
No 333
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00038 Score=69.50 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=34.2
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
++++||+|||||++|+++|.+|.+.|. +|+++|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~---~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGA---DVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCC---EEEEEecCccC
Confidence 456899999999999999999999997 89999988754
No 334
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.0082 Score=60.96 Aligned_cols=118 Identities=22% Similarity=0.315 Sum_probs=77.8
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCe-Ee--------------------------------------------------
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TT-------------------------------------------------- 234 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~-v~-------------------------------------------------- 234 (469)
...+|+|||+|++|+-+|..|.+.|.. ..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD 86 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence 346899999999999999999999988 43
Q ss_pred eeHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEcCCCCE--EeCCEEEEccCCc--cCCchhhhcCCcccCCCEEeC
Q 012165 235 RYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAK--PTVSPFERVGLNSSVGGIQVD 308 (469)
Q Consensus 235 ~~~~~l~~~gV~--~~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~~D~vi~a~G~~--p~~~~~~~~gl~~~~g~i~Vd 308 (469)
.+...+++.++. +..++.|+.+..++++..-.|++++|.. +.+|.||+|+|.- |+.+-+. |++.-.|.+.-.
T Consensus 87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~--G~~~f~g~~~HS 164 (443)
T COG2072 87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA--GLDEFKGRILHS 164 (443)
T ss_pred HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC--CccCCCceEEch
Confidence 345556665554 3445666667666666677788888865 5599999999983 3333222 333323333322
Q ss_pred CC----CCCCCCceEEecccc
Q 012165 309 GQ----FRTRMPGIFAIGDVA 325 (469)
Q Consensus 309 ~~----~~t~~~~Vfa~GD~a 325 (469)
.+ ....-++|-++|--+
T Consensus 165 ~~~~~~~~~~GKrV~VIG~Ga 185 (443)
T COG2072 165 ADWPNPEDLRGKRVLVIGAGA 185 (443)
T ss_pred hcCCCccccCCCeEEEECCCc
Confidence 21 223457888888443
No 335
>PLN02697 lycopene epsilon cyclase
Probab=97.20 E-value=0.0021 Score=66.42 Aligned_cols=79 Identities=25% Similarity=0.415 Sum_probs=60.5
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
-.|+|||+|+.|+.+|..+++.|.+|.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 469999999999999999999888775
Q ss_pred --------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165 235 --------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 235 --------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p 288 (469)
.+.+.+.+.|+++ .+..|++++..+++ +..+.+.+|.++.++.||.|.|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 1223335568998 56688888754333 3334567888999999999999876
No 336
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.20 E-value=0.002 Score=64.24 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=38.4
Q ss_pred HHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 239 LYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 239 ~l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+++.| ++++.++++++++.. ++.+ .+.+++|+++.+|+||.|.|....
T Consensus 115 ~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 115 RLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHhCCCcEEecCCeEEEEEec-CCee-EEEECCCCEEEeeEEEEeCCCCCH
Confidence 344556 999999999999864 3344 477889989999999999998653
No 337
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.19 E-value=0.0017 Score=64.91 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=37.5
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165 243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290 (469)
Q Consensus 243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 290 (469)
.|++++.++++++++.++++ + .+++++|+++.+|+||.|.|.....
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred CCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCCchh
Confidence 46888889999998765443 3 5788899999999999999998754
No 338
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.19 E-value=0.0019 Score=67.62 Aligned_cols=80 Identities=29% Similarity=0.454 Sum_probs=60.4
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------eeHHHHHHcCcEEEcCCeEE
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------RYEQLYQQNGVKFVKGASIK 254 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------~~~~~l~~~gV~~~~~~~v~ 254 (469)
..|+|||||+.|+.+|..+++.+.++. .+.+.+++.|++++ +..+.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 479999999999999999999888776 12234556799986 56788
Q ss_pred EEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCc
Q 012165 255 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 291 (469)
Q Consensus 255 ~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 291 (469)
.+... +....+.+.++ .+.+|.+|+|+|.+|...
T Consensus 84 ~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 84 DVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEec--CCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 88753 23334666665 689999999999988643
No 339
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.18 E-value=0.00039 Score=69.29 Aligned_cols=58 Identities=22% Similarity=0.400 Sum_probs=41.8
Q ss_pred eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcC
Q 012165 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 297 (469)
Q Consensus 236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g 297 (469)
+.+.+++.|++++.+++|.+++.+ ++.+ .|.++++ ++.+|.||+|+|.... .+++.++
T Consensus 151 l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g 208 (380)
T TIGR01377 151 LQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLG 208 (380)
T ss_pred HHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhcc
Confidence 345567789999999999999864 3333 4666666 7999999999997543 3444444
No 340
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.18 E-value=0.0022 Score=66.43 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=35.0
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165 244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p 288 (469)
|+.++.+ .+..+...+++.+.+|.+.+|..+.||.||+|+|.-.
T Consensus 111 gV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 111 NLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 7888755 5666654335677889999999999999999999874
No 341
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=97.16 E-value=0.0014 Score=52.13 Aligned_cols=31 Identities=10% Similarity=0.274 Sum_probs=23.3
Q ss_pred EEEEEEeCCEEEEEEeecCChHHhHHHHHHHh
Q 012165 405 IATFWIDSGKLKGVLVESGSPEEFQLLPTLAR 436 (469)
Q Consensus 405 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 436 (469)
-++||+++++++|+++ .+--..+...+++|.
T Consensus 101 GVVfYLrd~~VvGill-WNvf~~~~~AR~ii~ 131 (133)
T PF14721_consen 101 GVVFYLRDDRVVGILL-WNVFNRMPIARKIIA 131 (133)
T ss_dssp EEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred eEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence 4789999999999998 566667777887774
No 342
>PTZ00367 squalene epoxidase; Provisional
Probab=97.16 E-value=0.0005 Score=71.64 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=32.9
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
+..+||+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~---~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGR---KVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCC---EEEEEcccc
Confidence 456899999999999999999999987 799999875
No 343
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.16 E-value=0.00046 Score=72.66 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=32.9
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
.++.+|+|||||++|+++|..|+++|+ +|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi---~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGF---DVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCC---eEEEEeccc
Confidence 456899999999999999999999998 799999875
No 344
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.15 E-value=0.00049 Score=71.16 Aligned_cols=52 Identities=19% Similarity=0.396 Sum_probs=40.7
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-----CEEeCCEEEEccCCc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAK 287 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~~D~vi~a~G~~ 287 (469)
.+.+.+++.|+++++++.|++|..+ ++++..+.+.++ +++.+|.||+++...
T Consensus 237 aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 237 RLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 5677788889999999999999864 444445666554 578999999998753
No 345
>PLN02661 Putative thiazole synthesis
Probab=97.14 E-value=0.0058 Score=59.20 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=59.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHhC-CCeEe---------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTT--------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~-g~~v~--------------------------------------------------- 234 (469)
.-+|+|||+|..|+-+|..|++. +.++.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 45899999999999999999865 66665
Q ss_pred ------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc------CC--C------CEEeCCEEEEccCCcc
Q 012165 235 ------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL------ED--G------STIDADTIVIGIGAKP 288 (469)
Q Consensus 235 ------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~------~~--g------~~i~~D~vi~a~G~~p 288 (469)
.+.+..++.||+++.++.+.++..+ ++++.++.+ .+ + ..+.++.||+|||..+
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 0112333478999999888888754 567777763 11 1 2689999999999665
No 346
>PRK08013 oxidoreductase; Provisional
Probab=97.13 E-value=0.0024 Score=64.14 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=36.7
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.||+++.++++++++.++++ + .+.+.+|+++.+|+||-|-|....
T Consensus 125 ~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 125 SDITLLAPAELQQVAWGENE-A-FLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred CCcEEEcCCeeEEEEecCCe-E-EEEEcCCCEEEeeEEEEeCCCCcH
Confidence 37999999999999765443 3 467889999999999999998764
No 347
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.12 E-value=0.0028 Score=63.43 Aligned_cols=44 Identities=30% Similarity=0.417 Sum_probs=35.9
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
|++++.++++++++..+++ + .|.+++|+++.+|+||.|.|....
T Consensus 127 gv~i~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 127 NVTLRCPASLQALQRDDDG-W-ELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred CcEEEcCCeeEEEEEcCCe-E-EEEECCCCEEEeCEEEEeCCCCch
Confidence 8999999999998754333 2 577788889999999999998774
No 348
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.11 E-value=0.0026 Score=64.28 Aligned_cols=82 Identities=27% Similarity=0.444 Sum_probs=61.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------- 234 (469)
..+|+|||+|+.|+-+|..|++.|.+|+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 3579999999999999999999988876
Q ss_pred ----------------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCC-C--CEEeCCEEEE
Q 012165 235 ----------------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVI 282 (469)
Q Consensus 235 ----------------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~~D~vi~ 282 (469)
.+.+.+.+ .||++++++++++++.++++ + .|.+.+ + .++.+|+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEEE
Confidence 11122223 37999999999999865443 3 355553 2 3699999999
Q ss_pred ccCCccCC
Q 012165 283 GIGAKPTV 290 (469)
Q Consensus 283 a~G~~p~~ 290 (469)
|.|.....
T Consensus 176 ADG~~S~v 183 (415)
T PRK07364 176 ADGARSPI 183 (415)
T ss_pred eCCCCchh
Confidence 99987653
No 349
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.11 E-value=0.0023 Score=64.38 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=36.3
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.||+++.++++++++.++++ + .|.+++|+++.+|+||.|-|....
T Consensus 125 ~~v~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGESE-A-WLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred CCeEEEcCCeeEEEEeeCCe-E-EEEECCCCEEEeCEEEEeCCCCCh
Confidence 47999999999999754333 3 578889999999999999997654
No 350
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.08 E-value=0.003 Score=63.15 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=36.4
Q ss_pred HHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 239 LYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 239 ~l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+++.| ++++ +..+++++..++ .+ .+++++|+++.+|.||.|.|....
T Consensus 120 ~~~~~~~v~~~-~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 120 ALRFQPNLTWF-PARAQGLEVDPD-AA-TLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHhCCCcEEE-cceeEEEEecCC-eE-EEEECCCCEEEeeEEEEeCCCCch
Confidence 345556 8888 888888875433 33 477888888999999999998754
No 351
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.04 E-value=0.00063 Score=68.79 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=39.0
Q ss_pred eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---CCC--EEeCCEEEEccCCccC
Q 012165 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT 289 (469)
Q Consensus 236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vi~a~G~~p~ 289 (469)
+.+.+++.|+++++++.++++..+ +++|.++... +|+ .+.++.||+|+|--..
T Consensus 147 l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 147 LAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 446688899999999999999864 6788888776 454 5789999999987654
No 352
>PRK10015 oxidoreductase; Provisional
Probab=97.04 E-value=0.004 Score=63.09 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=61.8
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
-.|+|||+|+.|+-+|..|++.|.+|.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 369999999999999999999887775
Q ss_pred ---------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165 235 ---------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 235 ---------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~ 287 (469)
.+.+..++.|++++.++.|+.+... ++.+..+.. ++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 2344556789999999999998754 455544543 44579999999999975
Q ss_pred c
Q 012165 288 P 288 (469)
Q Consensus 288 p 288 (469)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 4
No 353
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.00069 Score=67.79 Aligned_cols=78 Identities=29% Similarity=0.482 Sum_probs=59.5
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
-.|+|||||..|+|.|.+.++.|.++.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 469999999999999999999998875
Q ss_pred ----------------ee----HHHH-HHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165 235 ----------------RY----EQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286 (469)
Q Consensus 235 ----------------~~----~~~l-~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~ 286 (469)
.+ ++.+ ...++.++.+ .|+++...++.++.+|.+.+|..+.|+.||++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 12 2222 2357777655 35665533333588999999999999999999995
No 354
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.04 E-value=0.0031 Score=65.94 Aligned_cols=81 Identities=27% Similarity=0.353 Sum_probs=62.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------- 234 (469)
..+|+|||+|+.|+-+|..|++.|.++.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 4579999999999999999999998876
Q ss_pred ------------------------eeH----HHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcC--CC--CEEeCCEEE
Q 012165 235 ------------------------RYE----QLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIV 281 (469)
Q Consensus 235 ------------------------~~~----~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vi 281 (469)
.++ +.+.+ .|+++++++++++++.++++. .+.++ +| +++.+|+||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence 011 22223 489999999999998765543 34454 56 479999999
Q ss_pred EccCCccC
Q 012165 282 IGIGAKPT 289 (469)
Q Consensus 282 ~a~G~~p~ 289 (469)
-|.|.+..
T Consensus 168 gADG~~S~ 175 (538)
T PRK06183 168 GCDGANSF 175 (538)
T ss_pred ecCCCchh
Confidence 99998654
No 355
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.02 E-value=0.004 Score=62.24 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=57.2
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------ 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------ 234 (469)
.|+|||+|+.|+.+|..|++.|.+|.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 37899999999999998888777765
Q ss_pred ---------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165 235 ---------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 235 ---------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p 288 (469)
.+.+.+.+.|++++ ...+..++..+ +....|.+++|+++.+|.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 12233355678776 44677776432 233357778888999999999999876
No 356
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.01 E-value=0.00073 Score=71.21 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
++.||||||+|.||++||.++++.|. +|+|||+.+.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lieK~~~ 37 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGV---HVDLFSLVPV 37 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCC---cEEEEEccCC
Confidence 45699999999999999999999987 7999998654
No 357
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.01 E-value=0.0017 Score=65.89 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=27.7
Q ss_pred EEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 56 IIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
|||+|.||++||.++++.|. +|+|+|+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga---~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGA---SVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 79999999999999999986 7999999874
No 358
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.00 E-value=0.00083 Score=69.49 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=44.9
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~ 287 (469)
.+.+.+++.|++++.++.|++|..+ ++++.+|.+.+|+++.+|.||+++|..
T Consensus 234 ~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 234 SLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 5667788999999999999999854 567778999999999999999998854
No 359
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.96 E-value=0.0034 Score=70.21 Aligned_cols=90 Identities=22% Similarity=0.308 Sum_probs=68.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (469)
.++|+|||+|+.|+.+|..|++.|.. .++|++..+.. .. ...+.+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~--vV~vv~~~~~~-------~~--------------------------~l~~~L 361 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIA--VVAIIDARADV-------SP--------------------------EARAEA 361 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc--eEEEEccCcch-------hH--------------------------HHHHHH
Confidence 47999999999999999999998842 58888765321 00 123457
Q ss_pred HHCCcEEEeCCcEEEEeCCCc--EEEeC----CCeEEEeccEEeccCCCCC
Q 012165 131 KEKGIEMIYQDPVTSIDIEKQ--TLITN----SGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 131 ~~~~i~~~~~~~v~~id~~~~--~v~~~----~g~~~~yd~lVlAtG~~~~ 175 (469)
++.+|+++.++.+..+..++. .|++. +++++++|.|+++.|..|.
T Consensus 362 ~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred HHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence 888999999988988876543 34443 4567999999999998875
No 360
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.96 E-value=0.0045 Score=61.58 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=36.6
Q ss_pred HHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165 240 YQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290 (469)
Q Consensus 240 l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 290 (469)
+.+. +++++.+++++++..++++ + .+.++++ ++.+|+||-|-|.....
T Consensus 114 ~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~S~v 162 (374)
T PRK06617 114 ITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGANSKV 162 (374)
T ss_pred HhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCCchh
Confidence 3443 5899999999999765443 3 4777776 89999999999987653
No 361
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.005 Score=54.63 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=80.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------- 234 (469)
...|+|||+|++|+-.|.+|++.|.++.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 4689999999999999999999999986
Q ss_pred ----eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-----------CCCEEeCCEEEEccCCccCCc-hhh-h--
Q 012165 235 ----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PFE-R-- 295 (469)
Q Consensus 235 ----~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-~~~-~-- 295 (469)
.+....-+.|.++..+..++++--.++.++.+|... |--.+++++||-+||.....- ++. .
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 223333467899999999998865434367777653 224688999999999876532 221 1
Q ss_pred -cCCccc-CCC--------EEeCCCCCCCCCceEEeccccc
Q 012165 296 -VGLNSS-VGG--------IQVDGQFRTRMPGIFAIGDVAA 326 (469)
Q Consensus 296 -~gl~~~-~g~--------i~Vd~~~~t~~~~Vfa~GD~a~ 326 (469)
++++.. .+. ..|+.+. --+|++|++|=.+.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~-eV~pgL~vaGMa~~ 229 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTG-EVYPGLYVAGMAVN 229 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccc-cccCCeEeehhhHH
Confidence 122211 111 2222222 25799999997664
No 362
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.95 E-value=0.0013 Score=70.67 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=36.0
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
.....++|+|||||++|++||..|.+.|+ +|+|+|+....+
T Consensus 234 ~~~~~~~v~IiGaG~aGl~aA~~L~~~g~---~v~v~E~~~r~G 274 (808)
T PLN02328 234 EGVEPANVVVVGAGLAGLVAARQLLSMGF---KVVVLEGRARPG 274 (808)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeccccCC
Confidence 34556899999999999999999999987 799999988764
No 363
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.94 E-value=0.0014 Score=71.45 Aligned_cols=75 Identities=27% Similarity=0.348 Sum_probs=56.8
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEA 258 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~ 258 (469)
.+++|+|||+|+.|+.+|..|++.|.+|+ ...+.+++.||++++++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 36799999999999999999999999887 112456778999998864411
Q ss_pred CCCCcEEEEEcCCCCEEeCCEEEEccCC-ccCC
Q 012165 259 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPTV 290 (469)
Q Consensus 259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~-~p~~ 290 (469)
.+.+++.....+|.||+|+|. .|..
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 234444445679999999998 4653
No 364
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.94 E-value=0.0089 Score=60.21 Aligned_cols=116 Identities=17% Similarity=0.267 Sum_probs=76.5
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------------------------- 234 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------------------------- 234 (469)
..++++|||+|++|+-.|..|.+.|.+++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 36899999999999999999999998876
Q ss_pred ----------eeHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEcCCC----CEEeCCEEEEccCCc--cCCchhhhc
Q 012165 235 ----------RYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFERV 296 (469)
Q Consensus 235 ----------~~~~~l~~~gV--~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vi~a~G~~--p~~~~~~~~ 296 (469)
.++...+.-++ .+.+++++.+++...+|. -.|...++ ++.-+|.|++|+|.. |+.+.....
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 33444445554 577788888887654232 23444333 467799999999987 655544443
Q ss_pred CCcccCCCEEeCCCCCC----CCCceEEec
Q 012165 297 GLNSSVGGIQVDGQFRT----RMPGIFAIG 322 (469)
Q Consensus 297 gl~~~~g~i~Vd~~~~t----~~~~Vfa~G 322 (469)
+++.=.|.+.-...++. ....|.++|
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG 193 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVG 193 (448)
T ss_pred chhhcCCcceehhhccCcccccCceEEEEC
Confidence 33332344443333332 346788888
No 365
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.93 E-value=0.0061 Score=61.26 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=33.4
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCCEEeCCEEEEccCCccC
Q 012165 243 NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~~D~vi~a~G~~p~ 289 (469)
.|+++++++++++++..+++ + .+++ .+++.+.+|+||-|-|....
T Consensus 121 ~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 121 PGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred CCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEEECCCccHh
Confidence 47999999999999854333 3 3444 34467999999999998754
No 366
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.92 E-value=0.0032 Score=63.60 Aligned_cols=73 Identities=14% Similarity=0.264 Sum_probs=47.8
Q ss_pred cCCeEEEEcCChHHHHHHHHHH-hCCCeEe----------------------------eeHHHHHHcCcEEEcCCeEEEE
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAV-GWKLDTT----------------------------RYEQLYQQNGVKFVKGASIKNL 256 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~-~~g~~v~----------------------------~~~~~l~~~gV~~~~~~~v~~i 256 (469)
.+++|+|||+|+.|+.+|..|. +.+.+|+ .+.+.+...+++++.+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 5789999999999999999764 6688887 222334456777764432211
Q ss_pred EeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 257 ~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+..++= ...+|.||+|+|..+.
T Consensus 117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 1111111 2378999999998853
No 367
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.90 E-value=0.006 Score=60.77 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.5
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
+|+|||+|.+|+-+|..|+++|.+|+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~ 27 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTL 27 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 58999999999999999999988876
No 368
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0012 Score=64.85 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=35.9
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~ 91 (469)
+...||+|||+|.|||++|..|.+.|+ +|+|+|..+..+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~---~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGY---QVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCc---EEEEEeccCCcCc
Confidence 556899999999999999999999999 7999999887653
No 369
>PRK07121 hypothetical protein; Validated
Probab=96.90 E-value=0.0014 Score=67.76 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=34.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
..+||||||+|.||++||.++++.|. +|+|+|+.+...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~---~VillEK~~~~g 56 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGA---RVLVLERAAGAG 56 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCC
Confidence 46899999999999999999999987 899999987643
No 370
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.89 E-value=0.0051 Score=65.70 Aligned_cols=95 Identities=23% Similarity=0.299 Sum_probs=61.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++|+|||||..|+.+|..+++.|.. +|+|+...... .++. . . .....
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~--~Vtlv~r~~~~-----~mpa------~--~----------------~ei~~ 370 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAE--SVTILYRRTRE-----EMPA------N--R----------------AEIEE 370 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCC--eEEEeeecCcc-----cCCC------C--H----------------HHHHH
Confidence 457999999999999999999998742 69999765421 0000 0 0 00122
Q ss_pred HHHCCcEEEeCCcEEEEeCCCcE--EE---eC---------------CC--eEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEKQT--LI---TN---------------SG--KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~~~--v~---~~---------------~g--~~~~yd~lVlAtG~~~~ 175 (469)
..+.||+++.+..+..+..++.. +. +. +| ..+++|.||+|+|..|.
T Consensus 371 a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~ 438 (652)
T PRK12814 371 ALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVD 438 (652)
T ss_pred HHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCC
Confidence 34568888887777666543321 11 11 12 25899999999998765
No 371
>PLN02676 polyamine oxidase
Probab=96.89 E-value=0.0014 Score=67.41 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=35.7
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~ 91 (469)
...++||+|||||++||+||.+|++.|.. +|+|+|+....+.
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~GG 64 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRIGG 64 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCCCC
Confidence 34568999999999999999999999862 6999999887643
No 372
>PRK06185 hypothetical protein; Provisional
Probab=96.89 E-value=0.0062 Score=61.30 Aligned_cols=82 Identities=27% Similarity=0.353 Sum_probs=62.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------- 234 (469)
..+|+|||||++|+-+|..|++.|.+++
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 4579999999999999999999988775
Q ss_pred ---------------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEE--cCCCC-EEeCCEEEEc
Q 012165 235 ---------------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK--LEDGS-TIDADTIVIG 283 (469)
Q Consensus 235 ---------------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~--~~~g~-~i~~D~vi~a 283 (469)
.+.+.+++ .|++++.++++.++..+ ++.+.++. ..+|+ ++.+|+||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 11222333 48999999999999864 44444343 45664 7999999999
Q ss_pred cCCccC
Q 012165 284 IGAKPT 289 (469)
Q Consensus 284 ~G~~p~ 289 (469)
.|....
T Consensus 165 dG~~S~ 170 (407)
T PRK06185 165 DGRHSR 170 (407)
T ss_pred CCCchH
Confidence 998753
No 373
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.89 E-value=0.0012 Score=67.88 Aligned_cols=63 Identities=22% Similarity=0.470 Sum_probs=43.7
Q ss_pred eeHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEE---cCCCC--EEeCCEEEEccCCccCCchhhhcCCc
Q 012165 235 RYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 299 (469)
Q Consensus 235 ~~~~~l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 299 (469)
.+.+.+++.| ++++++++|+.++..+++.+ .+. +.+|+ ++.+|.||+|.|.... .+++.+|+.
T Consensus 188 aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~ 256 (494)
T PRK05257 188 QLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP 256 (494)
T ss_pred HHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 3445566766 99999999999987555533 233 33453 6999999999998653 456666554
No 374
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.89 E-value=0.0018 Score=66.15 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=53.9
Q ss_pred cCCeEEEEcCChHHHHHHHHHHh--CCCeEe----------------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTT----------------------------RYEQLYQQNGVKFVKGASIKN 255 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~--~g~~v~----------------------------~~~~~l~~~gV~~~~~~~v~~ 255 (469)
.+++|+|||+|+.|+.+|..|++ .|.+|+ .+.+.++..+|+++.+..+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46799999999999999999986 688887 233456677888887754411
Q ss_pred EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+++-. ..+|.||+|+|..+.
T Consensus 105 ----------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 ----------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence 23444432 479999999999764
No 375
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.86 E-value=0.0049 Score=61.15 Aligned_cols=75 Identities=29% Similarity=0.434 Sum_probs=54.6
Q ss_pred eEEEEcCChHHHHHHHHHHhC--CCeEe----------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGW--KLDTT---------------------------------------------------- 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~--g~~v~---------------------------------------------------- 234 (469)
.|+|||+|+.|+.+|..|++. |.+|.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 378999999999999999876 77765
Q ss_pred ---------ee-HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 235 ---------RY-EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 ---------~~-~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+ +..+++.+..++.+.+|.+++. + +|++++|+++.+|.||.|.|.++.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence 00 1112322444666788888852 2 255588999999999999998864
No 376
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.86 E-value=0.0064 Score=61.41 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=33.4
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
++.+++++++++++..+++ + .+.+++|+++.+|+||.|.|....
T Consensus 117 ~~~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEE-V-QVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEecCCc-E-EEEEcCCCEEEeeEEEECCCccHH
Confidence 3456778888888754443 3 578889999999999999997653
No 377
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.86 E-value=0.00089 Score=67.81 Aligned_cols=88 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------ 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------ 234 (469)
.|+|||||+.|+-.|..+++.|.+|.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 48999999999999999999998886
Q ss_pred --------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---CCEEeCCEEEEccCCccCCchhhhcC
Q 012165 235 --------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERVG 297 (469)
Q Consensus 235 --------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g~~i~~D~vi~a~G~~p~~~~~~~~g 297 (469)
.+.+++++.||++++++.+.++..+ ++++.+|.+.+ ..++.++.+|-|+|. . +++..+|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g--~l~~~aG 156 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD-G--DLAALAG 156 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc-c--ccccccc
Confidence 2445667789999999999999864 66788888875 468999999999993 2 4444445
Q ss_pred Ccc
Q 012165 298 LNS 300 (469)
Q Consensus 298 l~~ 300 (469)
.+.
T Consensus 157 ~~~ 159 (428)
T PF12831_consen 157 APY 159 (428)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 378
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.85 E-value=0.0078 Score=61.72 Aligned_cols=95 Identities=23% Similarity=0.348 Sum_probs=64.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++++|||+|..|+.+|..+.+.|.. +|+||+..+.... |. . ....+.
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~--~Vtvv~r~~~~~~--~~---------~------------------~~e~~~ 329 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAA--SVTCAYRRDEANM--PG---------S------------------RREVAN 329 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCC--eEEEEEecCcccC--CC---------C------------------HHHHHH
Confidence 457999999999999999999998742 6999986543110 00 0 011234
Q ss_pred HHHCCcEEEeCCcEEEEeCCC-cE---EEe--------------------CCCeEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIEK-QT---LIT--------------------NSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~~-~~---v~~--------------------~~g~~~~yd~lVlAtG~~~~ 175 (469)
+.+.|++++.++.+..+..++ .. |++ .+...+++|.||+|+|..|.
T Consensus 330 ~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 399 (467)
T TIGR01318 330 AREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH 399 (467)
T ss_pred HHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence 567899999988888875322 11 122 11236899999999998875
No 379
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=96.84 E-value=6.3e-05 Score=60.12 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=29.0
Q ss_pred ccccccccccccccccC--CCCcccccc-cCCcccccccccccc
Q 012165 3 SVSNSLSFKHGLSLWCP--QSPSLHRIR-HSSAKNFQRRGFVVA 43 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~ 43 (469)
..+||||.++|++|+++ |+..|.|.. .+|++..+.|++.+.
T Consensus 62 ~~~np~p~vcGrvCp~p~~Ce~~C~r~~~~pV~I~~l~r~~~d~ 105 (111)
T PF14691_consen 62 REDNPFPAVCGRVCPHPKQCESACRRGKGEPVAIRALERFIADY 105 (111)
T ss_dssp HHH-TTHHHHHHH--GGGSGGGG-GGGST-S--HHHHHHHHHHH
T ss_pred HHhCCCcccccCCCCCcchHHHHccCCCCCCCcHHHHHHHHHHH
Confidence 46899999999999999 999999976 888888888876554
No 380
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.84 E-value=0.0013 Score=67.43 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=37.2
Q ss_pred eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~ 287 (469)
+.+.+++.|++++.++.|.+++.. +. ..|.+.+| ++.+|.||+|+|.-
T Consensus 189 L~~~a~~~Gv~i~~~t~V~~i~~~--~~-~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 189 LRRVALELGVEIHENTPMTGLEEG--QP-AVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHcCCEEECCCeEEEEeeC--Cc-eEEEeCCc-EEECCEEEEccccc
Confidence 445677889999999999999742 22 34677777 69999999999854
No 381
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.84 E-value=0.0055 Score=61.26 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=32.8
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
++. +.++++.+++..++ .+ .+++++|+++.+|+||.|.|....
T Consensus 126 ~~~-~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 126 NIT-RFGDEAESVRPRED-EV-TVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred CcE-EECCeeEEEEEcCC-eE-EEEECCCCEEEEeEEEEecCCCch
Confidence 455 66888888875433 33 477888889999999999998764
No 382
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.83 E-value=0.0014 Score=69.47 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=32.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
..+||||||+|.||++||.++++.|. +|+|||+...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~---~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGF---NTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCC---cEEEEEcCCC
Confidence 45799999999999999999999886 7999999753
No 383
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.81 E-value=0.0017 Score=63.00 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
+..+|+|+|||.+||++|.+|++++. +..|+|+|+.+..+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVG 49 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCccc
Confidence 44689999999999999999999986 77899999998775
No 384
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.81 E-value=0.0014 Score=69.44 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=32.8
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
...+||||||||.||++||.++++.|. +|+|+|+...
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~lveK~~~ 63 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGY---KTACISKLFP 63 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC---cEEEEeccCC
Confidence 346899999999999999999999886 7999999764
No 385
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.81 E-value=0.00063 Score=66.45 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
....++|+|||||.++...+..|.+.+. ..+|+++.+.+.+
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~-~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGP-EAKVTWISRSPGF 227 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-T-TEEEEEEESSSS-
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCC-CcEEEEEECCCcc
Confidence 4566899999999999999999999874 5789999988754
No 386
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.81 E-value=0.0013 Score=70.02 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=33.0
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
....+||||||||.||++||.++++.|. +|+|||+.+.
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAi~Aae~G~---~VivleK~~~ 39 (657)
T PRK08626 2 KIIYTDALVIGAGLAGLRVAIAAAQRGL---DTIVLSLVPA 39 (657)
T ss_pred CceeccEEEECccHHHHHHHHHHHHcCC---CEEEEeCCCC
Confidence 3456899999999999999999999987 7999998653
No 387
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.80 E-value=0.0067 Score=54.07 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=60.9
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------------------------- 234 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------------------------- 234 (469)
....++|||+|++|+-+|.+|++.|.++.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~ 95 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS 95 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence 34689999999999999999999998886
Q ss_pred -----eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC------C-----CCEEeCCEEEEccCCccCC
Q 012165 235 -----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------D-----GSTIDADTIVIGIGAKPTV 290 (469)
Q Consensus 235 -----~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~------~-----g~~i~~D~vi~a~G~~p~~ 290 (469)
.+....-+.|+++.....++++--.+++++.++... . --.+.+..||-|||...+.
T Consensus 96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 222333358999999999999875545788887763 2 2378999999999998754
No 388
>PRK08275 putative oxidoreductase; Provisional
Probab=96.80 E-value=0.0013 Score=68.88 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=32.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
..+||||||+|.||++||.++++.+. ..+|+|+|+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence 45799999999999999999998753 448999999864
No 389
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.79 E-value=0.0067 Score=60.77 Aligned_cols=52 Identities=31% Similarity=0.466 Sum_probs=38.9
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCC
Q 012165 243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 298 (469)
Q Consensus 243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 298 (469)
.|++++.+++++++...+ +.+ .+.+++|..+.+|.||.|.|.... +.+.+++
T Consensus 126 ~g~~~~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~--vr~~~~~ 177 (395)
T PRK05732 126 PGVTLHCPARVANVERTQ-GSV-RVTLDDGETLTGRLLVAADGSHSA--LREALGI 177 (395)
T ss_pred CCcEEEcCCEEEEEEEcC-CeE-EEEECCCCEEEeCEEEEecCCChh--hHHhhCC
Confidence 478999999999987543 333 477888888999999999998764 3344443
No 390
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.79 E-value=0.0015 Score=69.35 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=32.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
..+||||||+|.||++||..+++.|. +|+|||+.+.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~---~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGL---RVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCC---CEEEEeccCC
Confidence 45799999999999999999999986 7999999754
No 391
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.78 E-value=0.001 Score=63.79 Aligned_cols=64 Identities=19% Similarity=0.343 Sum_probs=45.9
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeC-CCCcEEEEEcCC--CC----EEeCCEEEEccCCccCCchhhhcCC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKLED--GS----TIDADTIVIGIGAKPTVSPFERVGL 298 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~-~~~~v~~v~~~~--g~----~i~~D~vi~a~G~~p~~~~~~~~gl 298 (469)
.+...++..|+++++++.|++|..+ +++++.+|++.+ +. .+.++.||+|.|.--...+|..+|+
T Consensus 198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 3455555569999999999999542 466777776643 33 5678999999997655567777777
No 392
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.78 E-value=0.0016 Score=68.27 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=32.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
..+||||||+|.|||+||.++++.|. +|+|||+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~---~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGK---RVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 46899999999999999999999987 799999988
No 393
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.76 E-value=0.0016 Score=66.86 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=40.6
Q ss_pred eHHHHHHcCcEEEcCCeEEEEEeCC--CC--cEEEEEcCCC---CEEeCCEEEEccCCc
Q 012165 236 YEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK 287 (469)
Q Consensus 236 ~~~~l~~~gV~~~~~~~v~~i~~~~--~~--~v~~v~~~~g---~~i~~D~vi~a~G~~ 287 (469)
+.+.+++.|+++++++.|++|+.++ ++ ++.++.+.+| +++++|.||+|++..
T Consensus 225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 5678888999999999999998643 23 3666777654 469999999999854
No 394
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.75 E-value=0.0017 Score=64.87 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=30.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
.+|+|||||.+|+.+|..|++.|. +|+|+|..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~---~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV---PVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---cEEEEecccc
Confidence 379999999999999999999998 7999997654
No 395
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.75 E-value=0.0086 Score=60.00 Aligned_cols=82 Identities=21% Similarity=0.154 Sum_probs=61.3
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
.+|+|||+|+.|+-+|..|++.|.++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 479999999999999999999988775
Q ss_pred -------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc-CCCC--EEeCCEEEEccCC
Q 012165 235 -------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA 286 (469)
Q Consensus 235 -------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vi~a~G~ 286 (469)
.+.+...+.|+++++++++++++..++..+ .|.+ .+|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG~ 161 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDGF 161 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCCC
Confidence 112222557999999999998875222222 4555 4664 6899999999998
Q ss_pred ccCC
Q 012165 287 KPTV 290 (469)
Q Consensus 287 ~p~~ 290 (469)
...+
T Consensus 162 ~S~v 165 (392)
T PRK08243 162 HGVS 165 (392)
T ss_pred CCch
Confidence 7653
No 396
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=96.74 E-value=0.0015 Score=67.07 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=43.4
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---cCCC--CEEeCCEEEEccCCccCCchhhhcCCc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDG--STIDADTIVIGIGAKPTVSPFERVGLN 299 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~---~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~ 299 (469)
.+.+.+++.|++++.+++|++++..+++.+ .+. +.+| .++.+|.||+|+|.... .+++.+|+.
T Consensus 183 aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~ 250 (483)
T TIGR01320 183 QLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP 250 (483)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence 344566778999999999999986544433 232 2334 36899999999997653 455555554
No 397
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=96.73 E-value=0.0086 Score=56.53 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=47.7
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEe-CCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhh
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 294 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~-~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 294 (469)
.++..+++.|+.++.+..+..+.. ++++....|.+.+|..+.++.+|+++|.--| .+|.
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~ 217 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLP 217 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcC
Confidence 567888899999999998888763 3455666899999999999999999997655 3443
No 398
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.72 E-value=0.0086 Score=62.66 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---CC--CEEeCCEEEEccCCccC
Q 012165 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPT 289 (469)
Q Consensus 237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~~D~vi~a~G~~p~ 289 (469)
....+++|++++.+++|+.+... ++++.+|.+. ++ .++.+|.||.|+|.-..
T Consensus 156 ~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 156 MLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred HHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 34557889999999999999864 4566566653 23 37999999999997643
No 399
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.71 E-value=0.0033 Score=69.28 Aligned_cols=71 Identities=24% Similarity=0.274 Sum_probs=51.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEee---------------------------eHHHHHHcCcEEEcCCeEEEEEeC
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTR---------------------------YEQLYQQNGVKFVKGASIKNLEAG 259 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~~---------------------------~~~~l~~~gV~~~~~~~v~~i~~~ 259 (469)
+++|+|||||+.|+.+|..|++.|.+|+. ..+.+.+.||+++++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~------ 610 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP------ 610 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc------
Confidence 47899999999999999999999999871 123455678888776321
Q ss_pred CCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 260 SDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 260 ~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.+.+...+|.||+|+|..+.
T Consensus 611 ------d~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 611 ------DLTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred ------ceEhhhhhcccccEEEECCCCCCC
Confidence 112233344669999999999754
No 400
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.70 E-value=0.0024 Score=59.73 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=34.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~ 91 (469)
++|++|||+|.+|+..|..|+++|. +|.|||+.++.+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCC---EEEEEeccccCCC
Confidence 4799999999999999999999887 7999999988753
No 401
>PLN02487 zeta-carotene desaturase
Probab=96.70 E-value=0.0026 Score=66.34 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=41.8
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCC--CC--cEEEEEc---CCCCEEeCCEEEEccCCc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~--~~--~v~~v~~---~~g~~i~~D~vi~a~G~~ 287 (469)
.+.+.++++|.++++++.|++|+.+. ++ ++.++.+ .+++.+++|.||++++..
T Consensus 300 pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 300 PIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 45678899999999999999998652 33 3677887 344579999999999964
No 402
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.69 E-value=0.0074 Score=62.73 Aligned_cols=108 Identities=25% Similarity=0.495 Sum_probs=77.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCC---CeEe------------------------------eeHHHHHHcCcEEEcCCeE
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWK---LDTT------------------------------RYEQLYQQNGVKFVKGASI 253 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g---~~v~------------------------------~~~~~l~~~gV~~~~~~~v 253 (469)
..+++|||.|..|..+...+.+.. .+++ .-.++.+++||+++.+..+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 467999999999999888887743 2232 3357889999999999999
Q ss_pred EEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccc
Q 012165 254 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326 (469)
Q Consensus 254 ~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~ 326 (469)
..|... .+ .|..++|.++.+|-+|+|||..|....+.+..+. ++.+ +|| ..++++++|++.
T Consensus 83 ~~idr~--~k--~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~----~v~~---~R~-i~D~~am~~~ar 143 (793)
T COG1251 83 IQIDRA--NK--VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLP----GVFV---YRT-IDDVEAMLDCAR 143 (793)
T ss_pred EEeccC--cc--eEEccCCcEeecceeEEecCccccccCCCCCCCC----CeeE---Eec-HHHHHHHHHHHh
Confidence 999853 33 4788999999999999999999976544433221 2222 222 356666666644
No 403
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.67 E-value=0.012 Score=63.14 Aligned_cols=95 Identities=18% Similarity=0.330 Sum_probs=63.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (469)
..++|+|||||..|+-+|..+.+.|.. +|+++...+...+ |.. ....+.
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~--~Vt~i~~~~~~~~--~~~---------------------------~~e~~~ 515 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHGAS--NVTCAYRRDEANM--PGS---------------------------KKEVKN 515 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCC--eEEEeEecCCCCC--CCC---------------------------HHHHHH
Confidence 357899999999999999999998742 6888876543211 000 011244
Q ss_pred HHHCCcEEEeCCcEEEEeCC-CcE---EEe---------CCC-----------eEEEeccEEeccCCCCC
Q 012165 130 YKEKGIEMIYQDPVTSIDIE-KQT---LIT---------NSG-----------KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 130 ~~~~~i~~~~~~~v~~id~~-~~~---v~~---------~~g-----------~~~~yd~lVlAtG~~~~ 175 (469)
+++.|++++++..+.++..+ +.. |.+ .+| .++++|.||+|+|..|.
T Consensus 516 ~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 516 AREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred HHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 67789999888777777432 221 222 112 25999999999998775
No 404
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.65 E-value=0.0023 Score=66.48 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
..+||||||+| ||++||.++++.|. +|+|||+.+...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~---~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGL---SVALVEATDKFG 42 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCC---cEEEEecCCCCC
Confidence 36799999999 99999999999987 799999987643
No 405
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.65 E-value=0.0024 Score=61.96 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=31.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
+.+|+|||||.+|+++|..|.++|+ +++|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~---~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGI---DVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC---eEEEEeeccc
Confidence 4689999999999999999999999 7999998544
No 406
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.64 E-value=0.009 Score=60.85 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=42.2
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CCC--EEeCCEEEEccCC-ccCCchhhh
Q 012165 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGA-KPTVSPFER 295 (469)
Q Consensus 237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vi~a~G~-~p~~~~~~~ 295 (469)
.+.+++.|+++++++.++++..++++++.++... +++ .+.++.||+|+|- ..|.++++.
T Consensus 137 ~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~~ 200 (439)
T TIGR01813 137 YKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAK 200 (439)
T ss_pred HHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHHH
Confidence 3445678999999999999987656777666553 343 4789999999994 455444443
No 407
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.64 E-value=0.0081 Score=60.29 Aligned_cols=51 Identities=18% Similarity=0.379 Sum_probs=38.6
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p 288 (469)
.+.+.+++.|+++++++.+.+++.. ++. ..+.+ +++++.+|.||+|+|...
T Consensus 110 ~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 110 ALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCCCcc
Confidence 3456677889999999999999754 333 34555 566899999999999754
No 408
>PRK09897 hypothetical protein; Provisional
Probab=96.64 E-value=0.01 Score=61.35 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=35.4
Q ss_pred HHHHcC--cEEEcCCeEEEEEeCCCCcEEEEEcCC-CCEEeCCEEEEccCCccC
Q 012165 239 LYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 239 ~l~~~g--V~~~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.| +.++.+++|++++..+++ + .+.+.+ |..+.+|.||+|+|..++
T Consensus 116 ~a~~~G~~V~v~~~~~V~~I~~~~~g-~-~V~t~~gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 116 QARQQKFAVAVYESCQVTDLQITNAG-V-MLATNQDLPSETFDLAVIATGHVWP 167 (534)
T ss_pred HHHHcCCeEEEEECCEEEEEEEeCCE-E-EEEECCCCeEEEcCEEEECCCCCCC
Confidence 334555 788888899999865433 3 466655 468999999999997543
No 409
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.63 E-value=0.013 Score=58.36 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.7
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
+|+|||+|.+|+-+|..|++.|.+|+
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~ 30 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVL 30 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 58999999999999999999988876
No 410
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.63 E-value=0.0094 Score=59.30 Aligned_cols=78 Identities=26% Similarity=0.301 Sum_probs=59.3
Q ss_pred eEEEEcCChHHHHHHHHH--HhCCCeEe----------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAA--VGWKLDTT---------------------------------------------------- 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l--~~~g~~v~---------------------------------------------------- 234 (469)
.|+|||+|+.|+-+|..| ++.+.+|.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 378999999999999999 66776664
Q ss_pred -----------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 235 -----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 -----------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.+...| .+..+..|++|+..++ ...+.+++|+++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 2334444345 4566789999986544 23578899999999999999996654
No 411
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.62 E-value=0.01 Score=60.73 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=22.8
Q ss_pred eEEEEcCChHHHHHHHHHHhC--CCeEe
Q 012165 209 KVVVVGGGYIGMEVAAAAVGW--KLDTT 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~--g~~v~ 234 (469)
.|+|||+|.+|+-+|..|++. |.+|+
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~V~ 53 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALDVL 53 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEE
Confidence 699999999999999999887 77775
No 412
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0059 Score=60.10 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=29.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~ 86 (469)
...+||||||||.||..||...++.|- +-+++..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga---~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGA---RTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCC---ceEEeecc
Confidence 567999999999999999999999986 56666554
No 413
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.59 E-value=0.0027 Score=66.91 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=31.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
..+||||||+|.||++||.++++.|. +|+|+|+...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lleK~~~ 41 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQ---SCALLSKVFP 41 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccCC
Confidence 35799999999999999999999876 7999999753
No 414
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.59 E-value=0.011 Score=61.43 Aligned_cols=56 Identities=20% Similarity=0.362 Sum_probs=40.6
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc--CCC--CEEeCCEEEEccC-CccCCchhhh
Q 012165 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDG--STIDADTIVIGIG-AKPTVSPFER 295 (469)
Q Consensus 239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~--~~g--~~i~~D~vi~a~G-~~p~~~~~~~ 295 (469)
.+++.|+++++++.++++.. +++++.++.+ .++ ..+.++.||+|+| +..|.+++++
T Consensus 199 ~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 199 NVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 34567899999999999975 3577766655 343 3689999999997 6666555544
No 415
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.0034 Score=61.70 Aligned_cols=78 Identities=33% Similarity=0.490 Sum_probs=56.5
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
-.|+|||||..|+|.|.+.++.|.+..
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~LNr 108 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVLNR 108 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHhhc
Confidence 479999999999999999999987764
Q ss_pred ----------------eeHHHHH-----HcCcEEEcCCeEEEEEe-CC-C--CcEEEEEcCCCCEEeCCEEEEccCC
Q 012165 235 ----------------RYEQLYQ-----QNGVKFVKGASIKNLEA-GS-D--GRVAAVKLEDGSTIDADTIVIGIGA 286 (469)
Q Consensus 235 ----------------~~~~~l~-----~~gV~~~~~~~v~~i~~-~~-~--~~v~~v~~~~g~~i~~D~vi~a~G~ 286 (469)
.+++.++ ..+.+++.+. |.++.- ++ + .++.+|.+.||+.+.++.||+.||.
T Consensus 109 s~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGT 184 (679)
T KOG2311|consen 109 SKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGA-VADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGT 184 (679)
T ss_pred cCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhh-hhheeeccCCCCceEEEEEEEecCcEeccceEEEeecc
Confidence 2222222 2456666554 444322 22 2 2478999999999999999999995
No 416
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.59 E-value=0.0027 Score=67.42 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=40.7
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEc---CCCC--EEeCCEEEEccCCccC
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~-~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p~ 289 (469)
.+.+..++.|++++.++.|.++..++ ++.+.+|.. .+++ ++.+|.||+|+|....
T Consensus 237 al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 237 ALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred HHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 34456778899999999999998653 456656554 2343 6899999999997653
No 417
>PRK06996 hypothetical protein; Provisional
Probab=96.58 E-value=0.01 Score=59.54 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=38.4
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC---CEEeCCEEEEccCCc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAK 287 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vi~a~G~~ 287 (469)
.+.+.+++.|++++.++++++++.++++ + .+.+.++ +++.+|+||-|-|..
T Consensus 120 ~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 120 ALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEECCCCcceEEeeeEEEECCCCC
Confidence 3455567779999999999999765444 2 4566654 589999999999964
No 418
>PRK06126 hypothetical protein; Provisional
Probab=96.58 E-value=0.012 Score=61.69 Aligned_cols=45 Identities=33% Similarity=0.529 Sum_probs=33.2
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCccC
Q 012165 243 NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPT 289 (469)
Q Consensus 243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p~ 289 (469)
.|+++++++++++++.++++ +. +.+ .+|+ ++.+|+||.|.|....
T Consensus 140 ~~v~i~~~~~v~~i~~~~~~-v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 140 PGVTLRYGHRLTDFEQDADG-VT-ATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred CCceEEeccEEEEEEECCCe-EE-EEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 48999999999999865443 32 333 3454 6899999999998653
No 419
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.57 E-value=0.0037 Score=69.81 Aligned_cols=73 Identities=30% Similarity=0.416 Sum_probs=53.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEeC
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEAG 259 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~~ 259 (469)
+++|+|||+|+.|+.+|..|+++|.+|+ ...+.+++.||++++++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~---- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK---- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence 5799999999999999999999999987 224567888999998864310
Q ss_pred CCCcEEEEEcCCC-CEEeCCEEEEccCCc-cC
Q 012165 260 SDGRVAAVKLEDG-STIDADTIVIGIGAK-PT 289 (469)
Q Consensus 260 ~~~~v~~v~~~~g-~~i~~D~vi~a~G~~-p~ 289 (469)
.+.+.+- ....+|.||+|+|.. |.
T Consensus 506 ------~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 ------TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred ------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 1222211 124589999999984 54
No 420
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.57 E-value=0.0023 Score=67.79 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=31.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY 88 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~vie~~~~ 88 (469)
.+||||||+|.||++||.++++. |. +|+|||+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~---~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDL---KVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCC---eEEEEECCCc
Confidence 47999999999999999999998 65 7999999764
No 421
>PRK02106 choline dehydrogenase; Validated
Probab=96.54 E-value=0.003 Score=66.36 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=45.4
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC----CEEeCCEEEEccCCccCCchhhhcCCcc
Q 012165 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNS 300 (469)
Q Consensus 239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vi~a~G~~p~~~~~~~~gl~~ 300 (469)
..+..++++++++.|++|..+ ++++.+|++.+. ..+.++.||+|.|..-...+|..+|+..
T Consensus 210 a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~ 274 (560)
T PRK02106 210 ALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP 274 (560)
T ss_pred ccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence 334678999999999999865 566778877443 2468999999999866556776667643
No 422
>PRK12839 hypothetical protein; Provisional
Probab=96.53 E-value=0.0038 Score=65.51 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=35.8
Q ss_pred cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
|.....+||+|||+|.+|++||..+++.|. +|+|||+.....
T Consensus 3 ~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~---~v~~iek~~~~g 44 (572)
T PRK12839 3 PSMTHTYDVVVVGSGAGGLSAAVAAAYGGA---KVLVVEKASTCG 44 (572)
T ss_pred CCcCCcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCCC
Confidence 344557899999999999999999999986 799999986543
No 423
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.51 E-value=0.005 Score=57.58 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=29.7
Q ss_pred cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
.|||||+|.|||+|+..+...+- .|+++|++...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg---~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGG---IVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCC---eEEEEeccCCc
Confidence 69999999999999999998864 59999987643
No 424
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.50 E-value=0.0042 Score=59.98 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (469)
...+.|.|||+|+-|...|..|.+.-- ...+|.-+=++.+ . ..+ -+|. +..+...
T Consensus 345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~---n---m~k-----------iLPe-------yls~wt~ 400 (659)
T KOG1346|consen 345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY---N---MEK-----------ILPE-------YLSQWTI 400 (659)
T ss_pred hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC---C---hhh-----------hhHH-------HHHHHHH
Confidence 345789999999999999999987532 1234433222221 0 000 0110 0012344
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~ 176 (469)
+.+++.|+.++.+..|.++..... .+.+.||.++..|.+|+|+|..|+.
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 557888999999988888765443 6788999999999999999998863
No 425
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.49 E-value=0.0034 Score=66.10 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=43.1
Q ss_pred eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CCC--EEeCC-EEEEccC-CccCCchhhh
Q 012165 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER 295 (469)
Q Consensus 236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~~~~ 295 (469)
+.+..++.|+++++++.++++..+++++|.+|... +|+ .+.+. .||+|+| +.-|.+++++
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 45667788999999999999987667888887654 333 46786 5888776 4555555544
No 426
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=96.44 E-value=0.015 Score=57.54 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=34.7
Q ss_pred HHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 237 EQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 237 ~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.+. |++++.++.|.+++. + .|.+.+|+ +.+|.||+|+|...+
T Consensus 152 ~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 152 AAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCCc-EEeCEEEECCCCChh
Confidence 3444554 999999999999973 2 46677774 789999999997643
No 427
>PRK13984 putative oxidoreductase; Provisional
Probab=96.44 E-value=0.019 Score=61.10 Aligned_cols=97 Identities=21% Similarity=0.238 Sum_probs=58.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCC---CCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~---~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (469)
.++|+|||||..|+-+|..|.+.+. ...+|+++..+... .. + + ... ...
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~----~~-----~-~-----~~~-------------~e~ 469 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTF----EE-----M-P-----ADM-------------EEI 469 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCc----cc-----C-C-----CCH-------------HHH
Confidence 4799999999999999999998752 12357776422110 00 0 0 000 001
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCcEE---Ee-------------------CCCeEEEeccEEeccCCCCC
Q 012165 128 EWYKEKGIEMIYQDPVTSIDIEKQTL---IT-------------------NSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 128 ~~~~~~~i~~~~~~~v~~id~~~~~v---~~-------------------~~g~~~~yd~lVlAtG~~~~ 175 (469)
....+.|++++.+..+..+..++..| .+ .++.++++|.||+|+|..|.
T Consensus 470 ~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 470 EEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred HHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 12345788888776666654332211 11 12246999999999998874
No 428
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.42 E-value=0.0042 Score=65.14 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=33.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
..+||||||+|.||++||..+++.|. +|+|||+.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~---~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGL---EPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCC
Confidence 36899999999999999999999987 79999998654
No 429
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.42 E-value=0.018 Score=57.71 Aligned_cols=81 Identities=22% Similarity=0.246 Sum_probs=59.2
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------- 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------- 234 (469)
.+|+|||+|+.|+-+|..|++.|.+|.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999988876
Q ss_pred -------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CCC--EEeCCEEEEccCC
Q 012165 235 -------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGA 286 (469)
Q Consensus 235 -------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~D~vi~a~G~ 286 (469)
.+.+.+.+.|+.++++..+..+...++..+ .|.+. +|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCCC
Confidence 112334456888888877777653222222 45664 775 6899999999998
Q ss_pred ccC
Q 012165 287 KPT 289 (469)
Q Consensus 287 ~p~ 289 (469)
+..
T Consensus 162 ~S~ 164 (390)
T TIGR02360 162 HGV 164 (390)
T ss_pred chh
Confidence 764
No 430
>PRK07538 hypothetical protein; Provisional
Probab=96.40 E-value=0.018 Score=58.04 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=32.3
Q ss_pred C-cEEEcCCeEEEEEeCCCCcEEEEEcCCC-----CEEeCCEEEEccCCccC
Q 012165 244 G-VKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPT 289 (469)
Q Consensus 244 g-V~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~~D~vi~a~G~~p~ 289 (469)
| +.+++++++++++.++++.+ +.+.++ +++.+|+||-|-|....
T Consensus 117 g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 117 GPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred CCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEECCCCCHH
Confidence 5 46999999999986655533 333332 48999999999998654
No 431
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.40 E-value=0.0054 Score=63.17 Aligned_cols=71 Identities=28% Similarity=0.317 Sum_probs=53.4
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEee---------------------------eHHHHHHcCcEEEcCCeEEEEEe
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTR---------------------------YEQLYQQNGVKFVKGASIKNLEA 258 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~---------------------------~~~~l~~~gV~~~~~~~v~~i~~ 258 (469)
.+++++|||+|+.|+.+|..|++.|.+++. ..+.+++.||++++++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 457999999999999999999999988871 124567789999998766311
Q ss_pred CCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165 259 GSDGRVAAVKLEDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~ 287 (469)
+.. ++....+|.||+|+|..
T Consensus 220 --------~~~-~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 --------ISA-DELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------cCH-HHHHhhCCEEEEccCCC
Confidence 111 11235799999999997
No 432
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.37 E-value=0.0038 Score=65.35 Aligned_cols=35 Identities=34% Similarity=0.474 Sum_probs=30.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
..+||||||+|.||++||.++ +.|. +|+|+|+.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~---~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGK---NVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCC---CEEEEEccCC
Confidence 457999999999999999999 8776 7999999753
No 433
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.35 E-value=0.0036 Score=65.94 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=29.1
Q ss_pred cEEEEcCcHHHHHHHHHHH----HcCCCCCcEEEEcCCCC
Q 012165 53 EFVIVGGGNAAGYAARTFV----EHGMADGRLCIVSKEAY 88 (469)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~----~~g~~~~~V~vie~~~~ 88 (469)
||||||||.||++||.+++ +.|. +|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~---~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL---KIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCC---eEEEEEccCC
Confidence 7999999999999999998 5565 7999999764
No 434
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.34 E-value=0.0045 Score=64.36 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=33.8
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
...++||||||||.||+.||.++++.|. +|.|+|+.+.
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~---~V~l~~K~~~ 40 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGL---KVALLSKAPP 40 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCC---cEEEEEcccc
Confidence 4557899999999999999999999986 7999998764
No 435
>PLN02815 L-aspartate oxidase
Probab=96.26 E-value=0.0061 Score=64.12 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=37.1
Q ss_pred CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165 302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 356 (469)
Q Consensus 302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~ 356 (469)
-|||.||.+.||++|++||+|+|+.......++.. -.+...+...|+.+++++.
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~-gnsl~e~lvfGr~Ag~~aa 430 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSI 430 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccCCCCCCcch-hhHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999852111111111 2245567777777777765
No 436
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.20 E-value=0.033 Score=47.88 Aligned_cols=42 Identities=29% Similarity=0.501 Sum_probs=32.0
Q ss_pred cCcEEE-cCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165 243 NGVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286 (469)
Q Consensus 243 ~gV~~~-~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~ 286 (469)
.|+++. ...+|..+...+++. .+.+++|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 355543 245888888765553 578899999999999999995
No 437
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.20 E-value=0.031 Score=55.92 Aligned_cols=78 Identities=26% Similarity=0.426 Sum_probs=56.8
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------ 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------ 234 (469)
+|+|||+|+.|+-+|..|++.|.+|.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 58999999999999999999887765
Q ss_pred ---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC------C--CEEeCCEEEEccCCccC
Q 012165 235 ---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 ---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~------g--~~i~~D~vi~a~G~~p~ 289 (469)
.+.+...+.|++++.+ .++++..+++ .+ .+.+.+ | .++.+|+||.|.|....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~-~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRD-GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCC-eE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 1233345679998765 5888875433 33 354442 2 47999999999997653
No 438
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.19 E-value=0.034 Score=55.79 Aligned_cols=26 Identities=35% Similarity=0.472 Sum_probs=23.6
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
+|+|||+|+.|+-+|..|++.|.+|.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~ 27 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTF 27 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEE
Confidence 68999999999999999999888775
No 439
>PRK11445 putative oxidoreductase; Provisional
Probab=96.19 E-value=0.033 Score=54.87 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=34.4
Q ss_pred HcCcEEEcCCeEEEEEeCCCCcEEEEEc-CCCC--EEeCCEEEEccCCccC
Q 012165 242 QNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPT 289 (469)
Q Consensus 242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vi~a~G~~p~ 289 (469)
+.|++++.++.++.++..+++ + .+.+ .+|+ ++.+|+||.|.|....
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 467899999999999865444 2 3443 5664 6899999999998754
No 440
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.19 E-value=0.03 Score=56.95 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=39.4
Q ss_pred HHHHHc---CcEEEcCCeEEEEEeC-----CCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165 238 QLYQQN---GVKFVKGASIKNLEAG-----SDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290 (469)
Q Consensus 238 ~~l~~~---gV~~~~~~~v~~i~~~-----~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 290 (469)
+.+++. +++++.++++.+++.. +++.-..|.+.+|+++.+|+||-|-|.....
T Consensus 125 ~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 125 NRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChh
Confidence 334444 4999999999999632 1222236888999999999999999997653
No 441
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0099 Score=56.25 Aligned_cols=83 Identities=29% Similarity=0.397 Sum_probs=66.9
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeE
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASI 253 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v 253 (469)
.+-.|+|||||+.|...|-+.++.|.+.- .+++..++..|.+....+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 34589999999999999999998876542 5567777888888877777
Q ss_pred EEEEeC-CCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165 254 KNLEAG-SDGRVAAVKLEDGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 254 ~~i~~~-~~~~v~~v~~~~g~~i~~D~vi~a~G~~p 288 (469)
+++++. ..+....|++++|..+++..+|+++|.+-
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred hcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 777763 23445689999999999999999999764
No 442
>PLN03000 amine oxidase
Probab=96.14 E-value=0.0078 Score=64.98 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=35.0
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
...++|+|||||++|+.+|..|.+.|+ +|+|+|+.+..+
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~---~V~VlE~~~riG 220 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPG 220 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCC---cEEEEEccCcCC
Confidence 456899999999999999999999987 799999988765
No 443
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.13 E-value=0.0071 Score=64.54 Aligned_cols=73 Identities=22% Similarity=0.424 Sum_probs=55.4
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEA 258 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~ 258 (469)
.+++|+|||+|+.|+..|..|++.|.+|+ ...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 47899999999999999999999999987 124567888999999875521
Q ss_pred CCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 259 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.+ ....+|.||+|+|..+.
T Consensus 386 -------~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 -------DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred -------cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 112222 13468999999998653
No 444
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.10 E-value=0.0058 Score=67.77 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=32.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (469)
..+||||||||.||++||.++++.|. +|+|+|+.+.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~---~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGA---NVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccc
Confidence 45799999999999999999999886 7999998764
No 445
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.05 E-value=0.0086 Score=62.74 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE 92 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~ 92 (469)
...+||||||+| +|++||.++++.|. +|+|||+.+.....
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~---~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGL---SVLIVEKSSYVGGS 53 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCC---cEEEEecCCCCcCc
Confidence 447899999999 89999999999987 79999998766544
No 446
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.05 E-value=0.036 Score=56.83 Aligned_cols=49 Identities=29% Similarity=0.466 Sum_probs=35.0
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p 288 (469)
.+.+++.||+++.+ .+..+.. +++++.++.. +++.+.++.||+|+|-..
T Consensus 127 ~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 127 YKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 34456678888765 6777764 3566666665 566799999999999754
No 447
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.04 E-value=0.029 Score=56.67 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.2
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
.|+|||+|..|+-.|..+++.|.+|.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~ 26 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVL 26 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EE
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEE
Confidence 38999999999999999999999885
No 448
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.02 E-value=0.036 Score=57.92 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=36.2
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-------CC-CEEeCCEEEEccCCc
Q 012165 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------DG-STIDADTIVIGIGAK 287 (469)
Q Consensus 239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-------~g-~~i~~D~vi~a~G~~ 287 (469)
.+++.||+++.++.+.++..++++++.++... ++ ..+.++.||+|+|-.
T Consensus 153 ~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 153 AVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 34566899999999999876545677776553 33 368999999999863
No 449
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.01 E-value=0.038 Score=56.75 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=36.7
Q ss_pred HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CC--CEEeCCEEEEccCC
Q 012165 238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGA 286 (469)
Q Consensus 238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vi~a~G~ 286 (469)
+.+++.|++++.++.++++..+ ++++.+|... ++ ..+.++.||+|+|-
T Consensus 139 ~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 139 RSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 3456779999999999999853 6777777653 33 36899999999984
No 450
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.93 E-value=0.051 Score=57.82 Aligned_cols=28 Identities=39% Similarity=0.458 Sum_probs=25.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
.-.|+|||||.+|+-+|..|+.+|.+|.
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~ 98 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVG 98 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEE
Confidence 3579999999999999999999999886
No 451
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.93 E-value=0.0099 Score=67.68 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
+...||||||+|.||++||.++++.|. +|+|+|+.+..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga---~VivlEK~~~~ 444 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAKL 444 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEccCCC
Confidence 346899999999999999999999986 79999998754
No 452
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.91 E-value=0.0069 Score=64.04 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=28.9
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
|||||+|.||++||.++++.|. +|+|+|+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~---~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGY---HVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCC---CEEEEEecC
Confidence 6999999999999999999886 799999986
No 453
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=95.90 E-value=0.0097 Score=61.53 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=43.5
Q ss_pred HHcCcEEEcCCeEEEEEeCCC--CcEEEEEcC---CCC--EEeCCEEEEccCCccCCchhhhcCCc
Q 012165 241 QQNGVKFVKGASIKNLEAGSD--GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN 299 (469)
Q Consensus 241 ~~~gV~~~~~~~v~~i~~~~~--~~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 299 (469)
+..++++++++.|.+|..+++ +++++|... +|+ ++.++.||+|.|..-+..+|-.++..
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~ 290 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG 290 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence 366699999999999987644 456666443 343 58999999999988776776555443
No 454
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.87 E-value=0.056 Score=53.87 Aligned_cols=52 Identities=29% Similarity=0.459 Sum_probs=38.0
Q ss_pred eeHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 235 RYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 235 ~~~~~l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
.+.+.+++.| ..+..++.+..++.. . ....|.+.+|+ +.+|.||+|+|...+
T Consensus 161 ~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 161 ALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 3455667788 455558888888743 2 45578888886 999999999996543
No 455
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=95.79 E-value=0.02 Score=45.98 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=42.4
Q ss_pred EEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCChh--hhcCCCcHHHHHHHHH
Q 012165 405 IATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDKA--KLQQASSVEEALEIAR 460 (469)
Q Consensus 405 ~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 460 (469)
+.|+.++ +++|+|+++++.++.++.. +..+++++.+++.. .+..+|++.|+++.|+
T Consensus 50 ~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 50 FVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred eeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 6677664 5999999998887766444 55567888887732 2467899999999986
No 456
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.79 E-value=0.058 Score=56.85 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=36.9
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 287 (469)
Q Consensus 239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~ 287 (469)
.+++.||+++.++.++++..+ ++++.++.. .+|+ .+.++.||+|+|-.
T Consensus 138 ~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 138 QCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 355679999999999998754 677766654 4564 58999999999964
No 457
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.76 E-value=0.054 Score=57.73 Aligned_cols=46 Identities=24% Similarity=0.376 Sum_probs=36.8
Q ss_pred HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---CCC--EEeCCEEEEccCC
Q 012165 240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA 286 (469)
Q Consensus 240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vi~a~G~ 286 (469)
+++.||+++.++.+.++..+ ++++.+|... +|+ .+.++.||+|||-
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 45689999999999998753 5778787664 453 5899999999996
No 458
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.75 E-value=0.01 Score=59.30 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=24.7
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
+|+|||||..|+++|..|++.|.+|+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~ 27 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVI 27 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEE
Confidence 68999999999999999999999887
No 459
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.75 E-value=0.015 Score=54.75 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=33.7
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
+...|++|||+|.|||.||.+|+..|. +|+++|++...
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~---~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGK---RVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCc---eEEEEcccccc
Confidence 345799999999999999999999997 79999998753
No 460
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.72 E-value=0.05 Score=56.43 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=34.1
Q ss_pred HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC----CEEeCCEEEEccCCccC
Q 012165 240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPT 289 (469)
Q Consensus 240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vi~a~G~~p~ 289 (469)
.++.|++++.++.|.++..+ ++. ..|.+.++ .++.++.||.|+|....
T Consensus 165 a~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 165 AAERGATILTRTRCVSARRE-GGL-WRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHCCCEEecCcEEEEEEEc-CCE-EEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 34568888888888888754 332 34555554 35899999999997543
No 461
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.70 E-value=0.074 Score=54.20 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=25.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
.-+|+|||+|+.|+-+|..|++.|.+|.
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~Vl 66 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETF 66 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEE
Confidence 3579999999999999999999998875
No 462
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.68 E-value=0.016 Score=59.24 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~ 87 (469)
.+.++++|+|+|..|+.+|..|++.|+ +|+++|...
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~---~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA---KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 346889999999999999999999998 799988754
No 463
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.66 E-value=0.056 Score=57.23 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=35.2
Q ss_pred cCcEEEcCCeEEEEEeCCCCcEEEEEcC---CCC--EEeCCEEEEccCC
Q 012165 243 NGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA 286 (469)
Q Consensus 243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vi~a~G~ 286 (469)
.||+++.++.+.++..++++++.+|... +|+ .+.++.||+|||-
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 4899999999999876556688888754 453 5889999999986
No 464
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.65 E-value=0.075 Score=55.97 Aligned_cols=96 Identities=25% Similarity=0.322 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (469)
...++|+|||+|..|+.++..+.+.+. .+++|+.+.+...+ +.. ....+
T Consensus 265 ~~gk~v~ViGgg~~a~d~a~~a~~lga--~~v~ii~r~~~~~~--~~~---------------------------~~~~~ 313 (564)
T PRK12771 265 FLGKRVVVIGGGNTAMDAARTARRLGA--EEVTIVYRRTREDM--PAH---------------------------DEEIE 313 (564)
T ss_pred CCCCCEEEECChHHHHHHHHHHHHcCC--CEEEEEEecCcccC--CCC---------------------------HHHHH
Confidence 346789999999999999998888873 36888765532100 000 01122
Q ss_pred HHHHCCcEEEeCCcEEEEeCCC-c-------EEEe----CCC---------eEEEeccEEeccCCCCC
Q 012165 129 WYKEKGIEMIYQDPVTSIDIEK-Q-------TLIT----NSG---------KLLKYGSLIVATGCTAS 175 (469)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~-~-------~v~~----~~g---------~~~~yd~lVlAtG~~~~ 175 (469)
...+.+++++.+..+..+..++ . .+.. .+| .++++|.||+|+|..|.
T Consensus 314 ~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~ 381 (564)
T PRK12771 314 EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDID 381 (564)
T ss_pred HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCc
Confidence 3456789988888888886543 1 1221 112 36999999999998764
No 465
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.033 Score=49.54 Aligned_cols=83 Identities=16% Similarity=0.302 Sum_probs=58.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------eeHHHHHHcCcEE
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------RYEQLYQQNGVKF 247 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------~~~~~l~~~gV~~ 247 (469)
..+|+|||+|+.+.-.|.++++.-.+.. .+++.-++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 3589999999999999999887643332 4455666778888
Q ss_pred EcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh
Q 012165 248 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 293 (469)
Q Consensus 248 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~ 293 (469)
++. .|++++. .+....+. .|.+.+.+|.||+|+|.....-.+
T Consensus 88 ~tE-tVskv~~--sskpF~l~-td~~~v~~~avI~atGAsAkRl~~ 129 (322)
T KOG0404|consen 88 ITE-TVSKVDL--SSKPFKLW-TDARPVTADAVILATGASAKRLHL 129 (322)
T ss_pred eee-ehhhccc--cCCCeEEE-ecCCceeeeeEEEecccceeeeec
Confidence 876 3666653 23333344 456689999999999987653333
No 466
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.62 E-value=0.019 Score=60.46 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=42.7
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-C--EEeC-CEEEEccCCcc-CCchhhh
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S--TIDA-DTIVIGIGAKP-TVSPFER 295 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~--~i~~-D~vi~a~G~~p-~~~~~~~ 295 (469)
.+.+.+++.||+++.++.+.++..+ ++++.+|...++ + .+.+ +.||+|+|--. |.+++++
T Consensus 226 aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 226 RLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence 3456678899999999999998753 677878766543 2 4676 78999988654 4344443
No 467
>PLN02976 amine oxidase
Probab=95.58 E-value=0.017 Score=64.99 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=33.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (469)
..++|+|||||++|+++|..|.+.|+ +|+|+|+.+..+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~---~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGF---SVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCC---cEEEEeeccCCC
Confidence 45899999999999999999999987 799999987654
No 468
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.58 E-value=0.021 Score=62.25 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=29.2
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeH
Q 012165 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYE 237 (469)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~ 237 (469)
..+++|+|||+|+.|+.+|..|+..|.+|+.++
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E 413 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAID 413 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEc
Confidence 357899999999999999999999999998443
No 469
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=95.53 E-value=0.018 Score=55.36 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=33.7
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
.....||+|||+|.+|-+.|..|.+.|- +|+|||++-..
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGR---rVhVIERDl~E 80 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGR---RVHVIERDLSE 80 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCc---EEEEEeccccc
Confidence 3456899999999999999999999986 89999987543
No 470
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.49 E-value=0.017 Score=53.30 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=35.8
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---C-CCEEeCCEEEEccCCc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---D-GSTIDADTIVIGIGAK 287 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~-g~~i~~D~vi~a~G~~ 287 (469)
.+.+..+..||+++.+ +|.++. ++.+++..+... + ....+.+.+|++.|.-
T Consensus 153 i~sea~k~~~V~lv~G-kv~ev~-dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPW 207 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFG-KVKEVS-DEKHRINSVPKAEAEDTIIKADVHKIVVSAGPW 207 (380)
T ss_pred HHHHHHhhcCeEEEEe-eeEEee-cccccccccchhhhcCceEEeeeeEEEEecCCC
Confidence 4455666677999998 588886 456666555544 2 3567899999999854
No 471
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.43 E-value=0.004 Score=54.67 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=33.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (469)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (469)
..||||||+|.|||+||+.+.++.+ +.+|.+||..-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rP-dlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRP-DLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCC-CceEEEEEeeecC
Confidence 4699999999999999999998764 8899999987654
No 472
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.40 E-value=0.031 Score=51.31 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=59.9
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------ 234 (469)
Q Consensus 209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------ 234 (469)
+|+|||+|..|+.+|..|+..|..++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 68999999999999999999998887
Q ss_pred --------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-CEEeCCEEEEccCCc
Q 012165 235 --------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAK 287 (469)
Q Consensus 235 --------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vi~a~G~~ 287 (469)
.+.+.+ ....+++++++|+++...++ .-.+..++| ....+|.|++++..-
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~~--~W~l~~~~g~~~~~~d~vvla~PAP 159 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTDN--DWTLHTDDGTRHTQFDDVVLAIPAP 159 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecCC--eeEEEecCCCcccccceEEEecCCC
Confidence 222322 34577788888888876522 335777666 567899999997754
Q ss_pred cCCchh
Q 012165 288 PTVSPF 293 (469)
Q Consensus 288 p~~~~~ 293 (469)
-...+|
T Consensus 160 Q~~~LL 165 (331)
T COG3380 160 QTATLL 165 (331)
T ss_pred cchhhc
Confidence 333444
No 473
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.39 E-value=0.082 Score=55.61 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=36.2
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---CC--CEEeCCEEEEccCC
Q 012165 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGA 286 (469)
Q Consensus 239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~~D~vi~a~G~ 286 (469)
..++.||+++.++.++++..+ +|++.++... +| ..+.++.||+|||-
T Consensus 145 ~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 145 RTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 344578999999999998854 6888887654 33 25789999999994
No 474
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.35 E-value=0.076 Score=54.84 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=36.8
Q ss_pred HHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCC-C--CEEeCCEEEEccCCccC
Q 012165 239 LYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPT 289 (469)
Q Consensus 239 ~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~~D~vi~a~G~~p~ 289 (469)
.+++ .||+++.++.++++..+ ++.+.++...+ + ..+.++.||+|+|-...
T Consensus 137 ~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 137 KALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 3444 68999999999998753 56666665543 3 36899999999997543
No 475
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.33 E-value=0.086 Score=54.71 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=34.0
Q ss_pred HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---CC--EEeCCEEEEccCCccC
Q 012165 240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPT 289 (469)
Q Consensus 240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i~~D~vi~a~G~~p~ 289 (469)
.++.|++++.+++|+++..+ ++.+ .+.+.+ |+ ++.++.||.|+|.-.+
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~-~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 165 AAERGAEILTRTRVVSARRE-NGLW-HVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEe-CCEE-EEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 44568899999999998754 3332 455443 43 6899999999997543
No 476
>PLN02985 squalene monooxygenase
Probab=95.33 E-value=0.11 Score=53.87 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=25.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
..+|+|||+|..|+-+|..|++.|.+|.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~ 70 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVH 70 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEE
Confidence 3579999999999999999999998886
No 477
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.31 E-value=0.1 Score=55.33 Aligned_cols=30 Identities=37% Similarity=0.464 Sum_probs=26.9
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
.+..+|+|||||..|+-+|..|++.|.+++
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~ 108 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVL 108 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEE
Confidence 456789999999999999999999988776
No 478
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.28 E-value=0.11 Score=55.44 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=25.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHhC-CCeEe
Q 012165 207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTT 234 (469)
Q Consensus 207 ~~~vvVvG~G~~g~e~A~~l~~~-g~~v~ 234 (469)
.-+|+|||+|+.|+-+|..|+++ |.++.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~ 60 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTR 60 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEE
Confidence 45799999999999999999995 88776
No 479
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.27 E-value=0.083 Score=53.66 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=43.9
Q ss_pred eHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEcCC-CCEEeCCEEEEccC-CccCCchhhh
Q 012165 236 YEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLED-GSTIDADTIVIGIG-AKPTVSPFER 295 (469)
Q Consensus 236 ~~~~l~~~gV~~~~~~~v~~i~~~~-~~~v~~v~~~~-g~~i~~D~vi~a~G-~~p~~~~~~~ 295 (469)
+.+.+++.|+++++++.++++..++ ++.+.++...+ +..+.++.||+|+| +..|.+++++
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 3455678899999999999998643 56676766543 35799999999998 4455555544
No 480
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.23 E-value=0.11 Score=54.92 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165 240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 287 (469)
Q Consensus 240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~ 287 (469)
+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 159 ~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 159 SLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 445789999999999987554577878764 4564 68899999999854
No 481
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.23 E-value=0.016 Score=60.49 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=46.1
Q ss_pred eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-C---EEeCCEEEEccCCccCCchhhhcCCc
Q 012165 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S---TIDADTIVIGIGAKPTVSPFERVGLN 299 (469)
Q Consensus 236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~---~i~~D~vi~a~G~~p~~~~~~~~gl~ 299 (469)
+....++.|++++.++.|.+|..+ ++++++|++.++ + .+.++.||+|.|..-...+|..+|+.
T Consensus 200 l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 200 LHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred hhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 334444678999999999999864 667778877543 2 35899999999976555666666664
No 482
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.22 E-value=0.048 Score=53.21 Aligned_cols=27 Identities=41% Similarity=0.615 Sum_probs=25.3
Q ss_pred CeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT 234 (469)
Q Consensus 208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~ 234 (469)
.+|+|||||..|+-.|..|.+.|.++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~ 29 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVV 29 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEE
Confidence 579999999999999999999999886
No 483
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.20 E-value=0.02 Score=59.68 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=46.9
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CC----CEEeCCEEEEccCCccCCchhhhcCCc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG----STIDADTIVIGIGAKPTVSPFERVGLN 299 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g----~~i~~D~vi~a~G~~p~~~~~~~~gl~ 299 (469)
.+...++..++++++++.++++..+ .++.+.+++. ++ .....+.||++.|...+..+|..+++.
T Consensus 208 ~l~~a~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig 277 (542)
T COG2303 208 YLKPALKRPNLTLLTGARVRRILLE-GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG 277 (542)
T ss_pred cchhHhcCCceEEecCCEEEEEEEE-CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence 5566678888999999999999864 4444455443 33 136789999999998877777766654
No 484
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.19 E-value=0.009 Score=55.89 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=53.5
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhC-CCeEe----ee---------------HHHHHH----------cCcEEEcCCeEEE
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGW-KLDTT----RY---------------EQLYQQ----------NGVKFVKGASIKN 255 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~-g~~v~----~~---------------~~~l~~----------~gV~~~~~~~v~~ 255 (469)
.--+++|||||.-|+.+|..+.+. +..-. -. ...+.+ .|.+.+. ..|++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~ 116 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKE 116 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHh
Confidence 345799999999999999988654 22211 00 011111 1111111 24555
Q ss_pred EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhh
Q 012165 256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 295 (469)
Q Consensus 256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~ 295 (469)
++++++ .|.+.+|++|.+|.+|+|.|..-+.+-+++
T Consensus 117 f~P~~N----~v~t~gg~eIsYdylviA~Giql~y~~IkG 152 (446)
T KOG3851|consen 117 FNPDKN----TVVTRGGEEISYDYLVIAMGIQLDYGKIKG 152 (446)
T ss_pred cCCCcC----eEEccCCcEEeeeeEeeeeeceeccchhcC
Confidence 554322 578899999999999999999887665544
No 485
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.07 E-value=0.12 Score=52.37 Aligned_cols=45 Identities=11% Similarity=0.302 Sum_probs=34.1
Q ss_pred HcCcEEEcCCeEEEEEeCCCCcEEEEE-cCCCC--EEeCCEEEEccCCc
Q 012165 242 QNGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAK 287 (469)
Q Consensus 242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~-~~~g~--~i~~D~vi~a~G~~ 287 (469)
+.||++++++.+.++..+ ++++.++. ..++. .+.++.||+|+|--
T Consensus 141 ~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 141 RKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred cCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 359999999999998753 56666654 33454 58999999999963
No 486
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.02 E-value=0.14 Score=54.06 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=37.9
Q ss_pred HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---cCCCC--EEeCCEEEEccCCcc
Q 012165 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP 288 (469)
Q Consensus 237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vi~a~G~~p 288 (469)
.+.+++.||+++.++.+.++..+ ++++.++. ..+|+ .+.++.||+|+|--.
T Consensus 142 ~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 142 VNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 34456679999999999998743 66666664 34564 589999999999743
No 487
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.95 E-value=0.091 Score=53.97 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=34.0
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165 244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287 (469)
Q Consensus 244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~ 287 (469)
|..++++..+.+|...+++. ..+++.++..+++|.||++...-
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~ 270 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLG 270 (501)
T ss_pred CcceeeceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHH
Confidence 88999999999998766665 24666666669999999987653
No 488
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.95 E-value=0.17 Score=53.60 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=34.2
Q ss_pred HcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCcc
Q 012165 242 QNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 288 (469)
Q Consensus 242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p 288 (469)
+.|++++.++.+.++..++++++.++.. .+|+ .+.++.||+|+|--.
T Consensus 160 ~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 160 AAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred hcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 4578888888888876544677777765 3453 578999999999643
No 489
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.95 E-value=0.15 Score=54.26 Aligned_cols=48 Identities=27% Similarity=0.271 Sum_probs=35.7
Q ss_pred HHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165 240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 287 (469)
Q Consensus 240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~ 287 (469)
.++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 176 a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 176 SLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 345788999998899877545677877754 3563 57899999999743
No 490
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=94.93 E-value=0.026 Score=53.39 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=38.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCccccc
Q 012165 50 ENREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYL 101 (469)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~-~~~V~vie~~~~~~~~~~~l~~~~~ 101 (469)
.+.+|||||||-.|.+.|..|+++-.. +.+|.|+|++..+.-....+|-+.+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi 137 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGI 137 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecce
Confidence 467999999999999999999876321 2489999998875444444554433
No 491
>PRK07121 hypothetical protein; Validated
Probab=94.88 E-value=0.19 Score=52.00 Aligned_cols=47 Identities=28% Similarity=0.401 Sum_probs=34.3
Q ss_pred HHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC-CC--EEeC-CEEEEccCCc
Q 012165 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK 287 (469)
Q Consensus 241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~~-D~vi~a~G~~ 287 (469)
++.|+++++++.++++..++++++.+|...+ ++ .+.+ +.||+|+|--
T Consensus 188 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~ 238 (492)
T PRK07121 188 AALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF 238 (492)
T ss_pred HhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence 3467888888888888765456777776643 32 5778 9999999854
No 492
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.88 E-value=0.13 Score=53.79 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=36.1
Q ss_pred HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 287 (469)
Q Consensus 239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~ 287 (469)
.+++.||++++++.+.++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 143 ~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 143 YLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 3455789999999999987554444766653 4564 58899999999964
No 493
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.75 E-value=0.03 Score=53.18 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=64.8
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (469)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (469)
..+++++|||||.-++..|--++-.|- ++.|+=+... .+...+.... ....+
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgs---ethlfiR~~k-----------vLR~FD~~i~--------------~~v~~ 238 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGS---ETHLFIRQEK-----------VLRGFDEMIS--------------DLVTE 238 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCC---eeEEEEecch-----------hhcchhHHHH--------------HHHHH
Confidence 456899999999998888888887774 4444322221 1211111111 12345
Q ss_pred HHHHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccCCCCC
Q 012165 129 WYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS 175 (469)
Q Consensus 129 ~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG~~~~ 175 (469)
.+...|++++.++.++.+.... ..+.+..+.....|.|+.|+|-.|.
T Consensus 239 ~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pn 288 (478)
T KOG0405|consen 239 HLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPN 288 (478)
T ss_pred HhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCC
Confidence 6788899999988887775433 3455556655569999999997765
No 494
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.69 E-value=0.19 Score=53.04 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=36.2
Q ss_pred HHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 287 (469)
Q Consensus 241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~ 287 (469)
++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 154 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 154 LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 45688999999999987655678888764 3554 57899999999854
No 495
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=94.68 E-value=0.087 Score=54.33 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=42.5
Q ss_pred eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 288 (469)
Q Consensus 235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p 288 (469)
.+....++.|..++.+..|+++....++ ..+|++.-| .|++..+|.|+|+-.
T Consensus 192 ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 192 ALARAASALGALVIENCPVTGLHVETDK-FGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccCc-ceecceEEechhHHH
Confidence 5566778899999999999999864343 348888888 699999999999865
No 496
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.65 E-value=0.22 Score=52.95 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=33.6
Q ss_pred HHHcC-cEEEcCCeEEEEEeCCCCcEEEEE---cCCCC--EEeCCEEEEccCC
Q 012165 240 YQQNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGA 286 (469)
Q Consensus 240 l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vi~a~G~ 286 (469)
.++.+ |+++.++.+.++..+ ++++.++. ..+++ .+.++.||+|+|-
T Consensus 142 a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 142 AKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred HHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 33444 999999999998643 56666663 34554 6899999999994
No 497
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.51 E-value=0.049 Score=59.09 Aligned_cols=73 Identities=27% Similarity=0.422 Sum_probs=55.6
Q ss_pred cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEA 258 (469)
Q Consensus 206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~ 258 (469)
.+++|.|||+|+.|+..|..|.+.|+.|+ +-.+++.+.||+|++|++|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 47899999999999999999999999987 2346788899999988654221
Q ss_pred CCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165 259 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 289 (469)
Q Consensus 259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~ 289 (469)
+. -|+-.-+-|.||+|+|..-.
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCCCC
Confidence 11 23334567899999997643
No 498
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=94.44 E-value=0.19 Score=53.56 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=35.3
Q ss_pred HHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 287 (469)
Q Consensus 241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~ 287 (469)
.+.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 198 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 198 MKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 35688999898888876544677777765 3553 67899999999854
No 499
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.41 E-value=0.24 Score=52.81 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=31.7
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCC
Q 012165 245 VKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGA 286 (469)
Q Consensus 245 V~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~ 286 (469)
|+++.++.+.++..+ ++++.++.. .+|+ .+.++.||+|+|-
T Consensus 166 v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 999999999998753 566666543 3554 5899999999995
No 500
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.40 E-value=0.06 Score=59.86 Aligned_cols=26 Identities=42% Similarity=0.796 Sum_probs=23.9
Q ss_pred CCCEEeCCCCCCCCCceEEecccccc
Q 012165 302 VGGIQVDGQFRTRMPGIFAIGDVAAF 327 (469)
Q Consensus 302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~ 327 (469)
.|||.||.+++|++|++||+|||+..
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~ 386 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACV 386 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCc
Confidence 47999999999999999999999864
Done!