Query 012166
Match_columns 469
No_of_seqs 151 out of 381
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 23:45:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.0 3.1E-10 6.6E-15 83.7 5.4 48 339-389 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.8 2E-08 4.4E-13 70.1 5.7 48 339-390 1-48 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 6.5E-08 1.4E-12 66.8 5.4 45 341-389 1-45 (45)
4 PLN03212 Transcription repress 98.6 5.7E-08 1.2E-12 95.4 6.9 66 326-394 12-77 (249)
5 PLN03091 hypothetical protein; 98.5 3.9E-07 8.4E-12 95.5 8.0 55 337-394 12-66 (459)
6 PF13921 Myb_DNA-bind_6: Myb-l 98.4 3.5E-07 7.7E-12 69.4 5.3 44 342-390 1-44 (60)
7 KOG0048 Transcription factor, 98.1 7.2E-06 1.6E-10 78.5 7.3 53 339-394 9-61 (238)
8 PLN03212 Transcription repress 97.9 1.8E-05 3.9E-10 78.1 5.4 50 338-392 77-126 (249)
9 PLN03091 hypothetical protein; 97.7 4.8E-05 1E-09 80.2 5.8 48 339-391 67-114 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.6 9.1E-05 2E-09 58.3 5.2 46 337-384 1-49 (57)
11 KOG0457 Histone acetyltransfer 97.3 0.00042 9.2E-09 73.0 6.8 49 340-392 73-121 (438)
12 PF13837 Myb_DNA-bind_4: Myb/S 97.3 0.00028 6E-09 56.6 3.7 54 339-392 1-67 (90)
13 KOG0048 Transcription factor, 96.7 0.0027 5.8E-08 61.1 5.4 49 339-392 62-110 (238)
14 KOG0051 RNA polymerase I termi 96.6 0.0037 8E-08 68.4 6.3 51 338-394 383-433 (607)
15 PF13873 Myb_DNA-bind_5: Myb/S 96.4 0.01 2.2E-07 47.3 6.0 54 339-392 2-72 (78)
16 PF13325 MCRS_N: N-terminal re 96.2 0.0051 1.1E-07 59.4 4.3 63 337-399 71-136 (199)
17 KOG0049 Transcription factor, 95.8 0.01 2.2E-07 65.9 4.9 51 338-392 359-409 (939)
18 KOG0049 Transcription factor, 95.7 0.0087 1.9E-07 66.4 3.7 53 335-391 408-460 (939)
19 PF09111 SLIDE: SLIDE; InterP 95.6 0.012 2.7E-07 52.4 3.8 55 338-392 48-113 (118)
20 COG5114 Histone acetyltransfer 95.5 0.056 1.2E-06 56.3 8.5 47 341-391 65-111 (432)
21 PLN03142 Probable chromatin-re 92.3 0.21 4.5E-06 58.2 5.7 55 338-392 925-987 (1033)
22 KOG4282 Transcription factor G 92.1 0.26 5.7E-06 49.4 5.6 54 339-392 54-116 (345)
23 KOG0050 mRNA splicing protein 91.1 0.3 6.6E-06 53.4 5.0 51 340-394 8-58 (617)
24 COG5147 REB1 Myb superfamily p 90.9 0.13 2.7E-06 55.9 2.0 49 338-392 290-338 (512)
25 KOG1279 Chromatin remodeling f 90.9 0.3 6.5E-06 53.1 4.8 49 336-389 250-298 (506)
26 COG5147 REB1 Myb superfamily p 90.2 0.41 8.8E-06 52.2 5.0 82 336-434 17-99 (512)
27 COG5259 RSC8 RSC chromatin rem 89.0 0.47 1E-05 51.5 4.3 46 339-389 279-324 (531)
28 KOG0051 RNA polymerase I termi 88.1 1.1 2.3E-05 49.9 6.4 57 337-397 434-516 (607)
29 PF08914 Myb_DNA-bind_2: Rap1 85.2 1.8 4E-05 35.1 4.8 50 339-391 2-59 (65)
30 PF12776 Myb_DNA-bind_3: Myb/S 83.2 1.9 4.2E-05 35.0 4.2 51 341-391 1-64 (96)
31 KOG2656 DNA methyltransferase 81.1 0.9 2E-05 48.5 1.9 52 340-392 131-188 (445)
32 PF08074 CHDCT2: CHDCT2 (NUC03 73.5 2.5 5.4E-05 40.6 2.4 47 339-385 3-58 (173)
33 PF04504 DUF573: Protein of un 71.4 8.1 0.00018 33.4 4.8 55 338-392 3-65 (98)
34 COG5118 BDP1 Transcription ini 71.2 6.7 0.00014 42.3 5.1 89 332-426 359-450 (507)
35 KOG0384 Chromodomain-helicase 62.7 4 8.8E-05 48.9 1.7 54 338-391 1132-1193(1373)
36 cd01187 INT_SG4 INT_SG4, DNA b 48.9 45 0.00099 31.4 6.0 84 338-423 98-187 (299)
37 KOG0050 mRNA splicing protein 39.8 32 0.0007 38.5 3.9 46 339-390 59-104 (617)
38 smart00595 MADF subfamily of S 34.3 39 0.00085 27.2 2.7 25 361-390 29-53 (89)
39 PF00984 UDPG_MGDP_dh: UDP-glu 32.0 13 0.00027 32.0 -0.5 45 97-148 19-63 (96)
40 PF09420 Nop16: Ribosome bioge 29.4 1.2E+02 0.0026 28.1 5.4 52 337-389 112-163 (164)
41 PF07128 DUF1380: Protein of u 25.5 71 0.0015 30.1 3.1 20 409-428 87-106 (139)
42 PHA02095 hypothetical protein 24.2 34 0.00074 29.5 0.8 24 32-58 39-62 (84)
43 cd02135 Arsenite_oxidase Nitro 22.3 99 0.0021 26.8 3.3 35 404-438 11-45 (160)
44 PF10545 MADF_DNA_bdg: Alcohol 21.8 87 0.0019 24.2 2.6 28 361-391 28-55 (85)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.05 E-value=3.1e-10 Score=83.67 Aligned_cols=48 Identities=29% Similarity=0.603 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 389 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLl 389 (469)
+.+||.+|++.|+++|++||.++|..|...++ .+||..+|+.+|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 46899999999999999999988999999886 5999999999999974
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.75 E-value=2e-08 Score=70.08 Aligned_cols=48 Identities=33% Similarity=0.637 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 390 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK 390 (469)
+.+||.+|++.|+.+|.+||.++|..|...++ +||..+|+++|+++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 35799999999999999999779999998764 9999999999999875
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.64 E-value=6.5e-08 Score=66.82 Aligned_cols=45 Identities=38% Similarity=0.770 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 012166 341 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 389 (469)
Q Consensus 341 ~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLl 389 (469)
+||.+|++.|+.++.+||.++|..|...+. +||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~----~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP----GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC----CCCHHHHHHHHHHhC
Confidence 599999999999999999889999998764 699999999999874
No 4
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.63 E-value=5.7e-08 Score=95.38 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=53.0
Q ss_pred cccCCcccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhccc
Q 012166 326 RKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 394 (469)
Q Consensus 326 ~kr~~~~~krRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 394 (469)
+|++.+--|.--++.+||+||++.|+..|++||.++|+.|.+... .+||+.+|++||.|.+++...
T Consensus 12 ~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g---~gRT~KQCReRW~N~L~P~I~ 77 (249)
T PLN03212 12 KKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG---LLRCGKSCRLRWMNYLRPSVK 77 (249)
T ss_pred CCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh---cCCCcchHHHHHHHhhchhcc
Confidence 444433333344577899999999999999999999999987653 489999999999999987654
No 5
>PLN03091 hypothetical protein; Provisional
Probab=98.46 E-value=3.9e-07 Score=95.53 Aligned_cols=55 Identities=25% Similarity=0.502 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhccc
Q 012166 337 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 394 (469)
Q Consensus 337 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 394 (469)
-++.+||.||++.|+..|++||.++|..|.+... .+||+.+|++||.|.+++...
T Consensus 12 lrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g---~gRT~KQCRERW~NyLdP~Ik 66 (459)
T PLN03091 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG---LQRCGKSCRLRWINYLRPDLK 66 (459)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc---cCcCcchHhHHHHhccCCccc
Confidence 3456799999999999999999999999997653 489999999999999987643
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.44 E-value=3.5e-07 Score=69.35 Aligned_cols=44 Identities=39% Similarity=0.795 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 012166 342 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 390 (469)
Q Consensus 342 WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK 390 (469)
||.+|++.|+.+|++||. +|+.|...+ .+||+.+|++||++.++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l----~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHL----GNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHS----TTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHH----CcCCHHHHHHHHHHHCc
Confidence 999999999999999995 999999875 37999999999999554
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.10 E-value=7.2e-06 Score=78.54 Aligned_cols=53 Identities=28% Similarity=0.404 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhccc
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 394 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 394 (469)
+-+||.||++.|++-|++||.|+|..|.+...- .|+...|+-||.|.+++.+.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl---~R~GKSCRlRW~NyLrP~ik 61 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGL---RRCGKSCRLRWTNYLRPDLK 61 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCC---CccchHHHHHhhcccCCCcc
Confidence 589999999999999999999999999988762 99999999999999998754
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.87 E-value=1.8e-05 Score=78.11 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
++.+||.||++.|++.+.+||. +|+.|...+ .+||..++|.+|.++++..
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~L----pGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAGRI----PGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHhhc----CCCCHHHHHHHHHHHHhHH
Confidence 3568999999999999999996 999999855 5999999999999988764
No 9
>PLN03091 hypothetical protein; Provisional
Probab=97.71 E-value=4.8e-05 Score=80.22 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
+.+||.||++.|++.+++||. +|+.|...+ .+||..++|.+|..++|.
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~L----PGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQL----PGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhc----CCCCHHHHHHHHHHHHHH
Confidence 568999999999999999997 999999764 599999999999998865
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.64 E-value=9.1e-05 Score=58.28 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCh---HHHHHHhcCCCCCCChhhHHHH
Q 012166 337 KNQRMWTLSEVMKLIDGISQFGVGKW---TDIKRLLFSSSSHRTPIDLRDK 384 (469)
Q Consensus 337 K~rr~WT~EEveaLv~GVeKyG~G~W---~~Il~~~f~if~~RT~VDLKDK 384 (469)
|+|..||+||-..+++||+.||.|+| +.|+..+.. ...|..+++-.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~--~~lT~~qV~SH 49 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV--DGLTRDQVASH 49 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC--CCCCHHHHHHH
Confidence 46788999999999999999999999 999987642 23388888744
No 11
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.33 E-value=0.00042 Score=72.97 Aligned_cols=49 Identities=22% Similarity=0.503 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 340 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 340 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
--||.+|+-.|++|+++||.|||.+|.+... .||.-++|+.|.++.-.+
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~hIG----tKtkeeck~hy~k~fv~s 121 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIADHIG----TKTKEECKEHYLKHFVNS 121 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHHHHc----ccchHHHHHHHHHHHhcC
Confidence 3499999999999999999999999999875 799999999999988543
No 12
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.26 E-value=0.00028 Score=56.58 Aligned_cols=54 Identities=33% Similarity=0.563 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHhh------cCC-----C--ChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 339 QRMWTLSEVMKLIDGISQ------FGV-----G--KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeK------yG~-----G--~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
|..||.+|+.+|++.+.. ++. + -|..|...+...=-.||+.+|++||.||.+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 568999999999999887 221 1 49999987522112799999999999999754
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.68 E-value=0.0027 Score=61.08 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
+..||+||++.|+++-..||. +|+.|.+.++ +||--++|.-|..-+|..
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~LP----GRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGN-RWSLIAGRLP----GRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCc-HHHHHHhhCC----CcCHHHHHHHHHHHHHHH
Confidence 678999999999999999998 9999998765 999999999998887543
No 14
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.59 E-value=0.0037 Score=68.41 Aligned_cols=51 Identities=29% Similarity=0.642 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhccc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 394 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 394 (469)
.+-.||++|.+.|..-|.++|. .|+.|-+.. +|.+.+|+|+||+.++++..
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-----gr~P~~crd~wr~~~~~g~~ 433 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-----GRMPMDCRDRWRQYVKCGSK 433 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-----ccCcHHHHHHHHHhhccccc
Confidence 4667999999999999999996 999999876 79999999999999998754
No 15
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.37 E-value=0.01 Score=47.28 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHhhc-----CC-----------CChHHHHHHhcCCC-CCCChhhHHHHHHHhhhhc
Q 012166 339 QRMWTLSEVMKLIDGISQF-----GV-----------GKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKy-----G~-----------G~W~~Il~~~f~if-~~RT~VDLKDKWRNLlK~s 392 (469)
...||.+|.+.|++-|++| |. .-|..|...+-... ..||..+||.+|.||....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 3569999999999999998 31 25999999874332 4899999999999998643
No 16
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.23 E-value=0.0051 Score=59.36 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCC-CCCChhhHHHHHHHhhhhcccccccC
Q 012166 337 KNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRASYAHQKNK 399 (469)
Q Consensus 337 K~rr~WT~EEveaLv~GVeKyG--~G~W~~Il~~~f~if-~~RT~VDLKDKWRNLlK~s~~~~~~r 399 (469)
..+-+||.+|++.|........ ...+.+|+..+.++| ..||+.+|.+.||.|.++...+.|..
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ~v 136 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQSV 136 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhcccc
Confidence 3578899999999999887764 468999999998888 67999999999999998887765533
No 17
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.85 E-value=0.01 Score=65.91 Aligned_cols=51 Identities=24% Similarity=0.577 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
++-+||.+|+..|+.+|++||.--|..|...+ .+|+-.+|+++|-|.+..+
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v----PnRSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV----PNRSDSQCRERYTNVLNRS 409 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhc----CCccHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999765 4999999999999887543
No 18
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.69 E-value=0.0087 Score=66.42 Aligned_cols=53 Identities=30% Similarity=0.522 Sum_probs=44.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 335 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 335 rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
++-+.-.||..|++.|+..|++||.|+|.+|...++ +||..++..+-+.++..
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp----~~t~~q~~rrR~R~~~~ 460 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLP----KKTSRQLRRRRLRLIAA 460 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHHHHcc----ccchhHHHHHHHHHHHH
Confidence 344566799999999999999999999999997654 89998887777666654
No 19
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=95.63 E-value=0.012 Score=52.36 Aligned_cols=55 Identities=24% Similarity=0.487 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~-------f~i-f~~RT~VDLKDKWRNLlK~s 392 (469)
..+.||.+|+..|+.-+.+||. |.|..|+... |+. |..||+.+|+.+-..|+++-
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 3567999999999999999999 9999999873 333 38999999999999999863
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.53 E-value=0.056 Score=56.25 Aligned_cols=47 Identities=21% Similarity=0.548 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 341 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 341 ~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
-|+..|+-.|+++.+..|.|||.+|.+... .|+.-++|+.|--+.--
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiG----sr~kee~k~HylK~y~e 111 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIG----SRAKEEIKSHYLKMYDE 111 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHh----hhhhHHHHHHHHHHHhh
Confidence 499999999999999999999999998765 79999999999777653
No 21
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=92.30 E-value=0.21 Score=58.16 Aligned_cols=55 Identities=20% Similarity=0.425 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-------cCC-CCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~-------f~i-f~~RT~VDLKDKWRNLlK~s 392 (469)
+.+.||.+|+..|+-.+.+||.|+|..|+... |+. |..||+.+|+.|-.+|++.-
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999998763 444 48999999999999999864
No 22
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=92.12 E-value=0.26 Score=49.44 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCC-----hHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 339 QRMWTLSEVMKLIDGISQF----GVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKy----G~G~-----W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
...|+.+|+.+|++...+. ..|+ |..|.+.....=-.||+.+||.||.||.|..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 6889999999999987643 4455 9999985422224899999999999999754
No 23
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=91.11 E-value=0.3 Score=53.44 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhccc
Q 012166 340 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 394 (469)
Q Consensus 340 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 394 (469)
--|+-.|++.|..+|.+||...|+.|...+. ..|+.+|+-+|--.+-.++.
T Consensus 8 gvwrntEdeilkaav~kyg~nqws~i~sll~----~kt~rqC~~rw~e~ldp~i~ 58 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGKNQWSRIASLLN----RKTARQCKARWEEWLDPAIK 58 (617)
T ss_pred ceecccHHHHHHHHHHHcchHHHHHHHHHHh----hcchhHHHHHHHHHhCHHHh
Confidence 4599999999999999999999999998874 78999999999877766543
No 24
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=90.90 E-value=0.13 Score=55.94 Aligned_cols=49 Identities=35% Similarity=0.716 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
.+..||.+|+..|..-|.++|. .|+.|.... +|-+.+|.|+||+.++.+
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-----~rmp~~crd~wr~~~~~g 338 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-----GRMPNDCRDRWRDYVKCG 338 (512)
T ss_pred hhccCccccccccccccccccc-hhhHhhhhh-----ccCcHHHHHHHhhhcccc
Confidence 4567999999999999999995 999999764 799999999999999987
No 25
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=90.89 E-value=0.3 Score=53.06 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=43.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 012166 336 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 389 (469)
Q Consensus 336 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLl 389 (469)
-..+..||.+|.-.|++||++||- .|.+|..+.. .||.-||=.|+..|=
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg----~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG----TKSQEQCILKFLRLP 298 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC----CCCHHHHHHHHHhcC
Confidence 345778999999999999999997 9999998764 899999999998774
No 26
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=90.17 E-value=0.41 Score=52.16 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=62.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcccccccCCCCCccccccCCCHHH
Q 012166 336 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPV 415 (469)
Q Consensus 336 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~~~~~r~~~~rK~~~~~iP~~l 415 (469)
.+..-.|+..|++.|..+|++||.-+|+.|...|. .||+-|++-+|-|..... ..++. .-.+.
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~----~~~~kq~~~rw~~~lnp~----lk~~~---------~~~ee 79 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI----SSTGKQSSNRWNNHLNPQ----LKKKN---------WSEEE 79 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc----ccccccccchhhhhhchh----ccccc---------ccHHH
Confidence 34455899999999999999999999999998775 599999999995554432 11222 35677
Q ss_pred HHHHHHhhhhCCC-CCCcCC
Q 012166 416 LCRIRELATIHPY-PRVPYS 434 (469)
Q Consensus 416 L~RVreLA~~hpy-p~~~~~ 434 (469)
..+++.|+..+++ |..++.
T Consensus 80 d~~li~l~~~~~~~wstia~ 99 (512)
T COG5147 80 DEQLIDLDKELGTQWSTIAD 99 (512)
T ss_pred HHHHHHHHHhcCchhhhhcc
Confidence 8888888888877 664443
No 27
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=88.96 E-value=0.47 Score=51.45 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 389 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLl 389 (469)
-.+||.+|.-.|++||+.||. .|.+|.++.. .+|.-||=-|+-+|=
T Consensus 279 dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg----tKt~EqCIl~FL~LP 324 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGD-DWDKVARHVG----TKTKEQCILHFLQLP 324 (531)
T ss_pred cccccHHHHHHHHHHHHHhhh-hHHHHHHHhC----CCCHHHHHHHHHcCC
Confidence 458999999999999999997 9999998874 899999988887664
No 28
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=88.07 E-value=1.1 Score=49.89 Aligned_cols=57 Identities=28% Similarity=0.551 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHh-------hc------------------CCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh-
Q 012166 337 KNQRMWTLSEVMKLIDGIS-------QF------------------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR- 390 (469)
Q Consensus 337 K~rr~WT~EEveaLv~GVe-------Ky------------------G~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK- 390 (469)
+.+.+||.+|.+.|++.|+ .| -.-+|..|-... ..|+.++|+-||--|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~----~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEML----GTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhh----cCCCcchHHHHHHHHHhh
Confidence 5688999999999999996 44 123899999844 58999999999999996
Q ss_pred hcccccc
Q 012166 391 ASYAHQK 397 (469)
Q Consensus 391 ~s~~~~~ 397 (469)
++....+
T Consensus 510 ~s~n~~~ 516 (607)
T KOG0051|consen 510 PSFNKRQ 516 (607)
T ss_pred HHhhccc
Confidence 4444433
No 29
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=85.20 E-value=1.8 Score=35.12 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHhhc---C---CCC--hHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 339 QRMWTLSEVMKLIDGISQF---G---VGK--WTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKy---G---~G~--W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
|.++|.+|+.+|++=|.++ | .|+ |+++..... ..+|-.-++|+|+--++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~---t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP---TRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S---SS--SHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc
Confidence 5789999999999999654 3 243 877776653 489999999999766554
No 30
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=83.22 E-value=1.9 Score=35.00 Aligned_cols=51 Identities=25% Similarity=0.484 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHhhc---C----CC-----ChHHHHHHhcCCC-CCCChhhHHHHHHHhhhh
Q 012166 341 MWTLSEVMKLIDGISQF---G----VG-----KWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 341 ~WT~EEveaLv~GVeKy---G----~G-----~W~~Il~~~f~if-~~RT~VDLKDKWRNLlK~ 391 (469)
.||+++++.|++.+... | .| .|..|...+...+ ...|..+||.||..|.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 49999999999988544 2 22 4888888864433 456889999999999874
No 31
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=81.10 E-value=0.9 Score=48.47 Aligned_cols=52 Identities=27% Similarity=0.421 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh-cCCC-CCCChhhHHHHH----HHhhhhc
Q 012166 340 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSS-SHRTPIDLRDKW----RNLLRAS 392 (469)
Q Consensus 340 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~-f~if-~~RT~VDLKDKW----RNLlK~s 392 (469)
..||.+|.+.|.+-.++|-. +|--|.+.| -+.| ..||--|||||| |+|+++.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 56999999999999999998 999999887 2224 459999999999 5555554
No 32
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.49 E-value=2.5 Score=40.64 Aligned_cols=47 Identities=26% Similarity=0.619 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-cCCCC--CCCh------hhHHHHH
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSSS--HRTP------IDLRDKW 385 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~-f~if~--~RT~------VDLKDKW 385 (469)
..-|-..-+-.|+.||-+||-|+|.+|..+- |.+++ =++. .+.|.|+
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkF 58 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKF 58 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHH
Confidence 4557777788899999999999999999984 54431 1332 4788776
No 33
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=71.35 E-value=8.1 Score=33.36 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCC---ChHHHHHHhcCCC-CCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQF----GVG---KWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKy----G~G---~W~~Il~~~f~if-~~RT~VDLKDKWRNLlK~s 392 (469)
-.|-||++++-.|++|+-.| |.. .|..........+ ..=|..||.||-|.|.+..
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 35679999999999999877 754 4444443322222 2237789999999999643
No 34
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=71.24 E-value=6.7 Score=42.25 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=59.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcc---cccccCCCCCccccc
Q 012166 332 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY---AHQKNKGEVDPKHAM 408 (469)
Q Consensus 332 ~~krRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~---~~~~~r~~~~rK~~~ 408 (469)
.|+ ++..-+||..|.+.+.+++..+|+ -++.|...|+ +|...++|-||.+--|... .+..+-+++-.--.-
T Consensus 359 ~g~-~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP----~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY 432 (507)
T COG5118 359 FGK-KKGALRWSKKEIEKFYKALSIWGT-DFSLISSLFP----NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEY 432 (507)
T ss_pred ccC-CCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC----chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHH
Confidence 454 667889999999999999999998 8999987764 8999999999988775321 122222222100000
Q ss_pred cCCCHHHHHHHHHhhhhC
Q 012166 409 RSLPKPVLCRIRELATIH 426 (469)
Q Consensus 409 ~~iP~~lL~RVreLA~~h 426 (469)
-.+-..+++.|.||+.-|
T Consensus 433 ~k~~~~~~e~l~Elq~E~ 450 (507)
T COG5118 433 NKLRSYLLEKLIELQNEH 450 (507)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 113446777777776544
No 35
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=62.68 E-value=4 Score=48.88 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCC--------CCCChhhHHHHHHHhhhh
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSS--------SHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if--------~~RT~VDLKDKWRNLlK~ 391 (469)
.---|..+++..|+-||-+||.|+|..|+.+-.--| ..=++++|.-+=.-|++.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls~ 1193 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLSL 1193 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHHH
Confidence 456699999999999999999999999998732111 133456777766666654
No 36
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=48.89 E-value=45 Score=31.43 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC------ChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcccccccCCCCCccccccCC
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVG------KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSL 411 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G------~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~~~~~r~~~~rK~~~~~i 411 (469)
..+.||.+|+.+|++++..+... .|..|...... ..-|..-=+.=+|..+-.....-....++. .+...+|+
T Consensus 98 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~~i~ll~~-tGlR~~E~~~L~~~did~~~~~i~i~~~K~-~~~r~vpl 175 (299)
T cd01187 98 TPYIYTDEEIQRLLAAALQLPPTSGLRPWTYRTLFGLLAV-TGLRLGEALRLRLSDVDLDSGILTVRDSKF-GKSRLVPL 175 (299)
T ss_pred CCccCCHHHHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH-hCCcHHHHHhCcHHhcCCCCCeEEEEecCC-CCccEEeC
Confidence 34569999999999999877643 25555544311 135666555556655532111111111111 22346889
Q ss_pred CHHHHHHHHHhh
Q 012166 412 PKPVLCRIRELA 423 (469)
Q Consensus 412 P~~lL~RVreLA 423 (469)
|+++.+-+.+..
T Consensus 176 ~~~l~~~l~~~~ 187 (299)
T cd01187 176 HASTRAALRDYL 187 (299)
T ss_pred CHHHHHHHHHHH
Confidence 999887777653
No 37
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=39.79 E-value=32 Score=38.46 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 390 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK 390 (469)
+--|+.+|++.|+.....+-. .|..|.... +||+.+|-.+|-||+-
T Consensus 59 ~tews~eederlLhlakl~p~-qwrtIa~i~-----gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPT-QWRTIADIM-----GRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCC-ccchHHHHh-----hhhHHHHHHHHHHHHH
Confidence 345999999999999988876 999999765 7999999999999985
No 38
>smart00595 MADF subfamily of SANT domain.
Probab=34.30 E-value=39 Score=27.16 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=21.0
Q ss_pred ChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 012166 361 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 390 (469)
Q Consensus 361 ~W~~Il~~~f~if~~RT~VDLKDKWRNLlK 390 (469)
-|..|...+.. |..+|+-||+||-.
T Consensus 29 aW~~Ia~~l~~-----~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEELGL-----SVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHHCc-----CHHHHHHHHHHHHH
Confidence 59999887742 99999999999974
No 39
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=31.99 E-value=13 Score=31.96 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=29.6
Q ss_pred ccccccccccccccccchhhhhhhcccCCCCCCCCccCCCCCCCCCCCCCCC
Q 012166 97 FHAANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLGNSSSESHSPGASGS 148 (469)
Q Consensus 97 ~~~~~~~s~~c~~~~ld~~~a~~~~~l~~gp~~~s~l~nssses~spg~sgs 148 (469)
|--.|+|+..|+.+ ++++.+.+.-+...|..+.++- -++|||+|+
T Consensus 19 iaf~Nel~~lce~~--giD~~~V~~~~~~d~ri~~~~~-----~pg~g~GG~ 63 (96)
T PF00984_consen 19 IAFANELARLCEKL--GIDVYEVIEAANTDPRIGPHYL-----RPGPGFGGS 63 (96)
T ss_dssp HHHHHHHHHHHHHH--TSBHHHHHHHHHTSTTTTSSS------S-SSS--SS
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHccCcccccccC-----CCCCCCCCc
Confidence 34468999999998 5666676677777788763322 456788988
No 40
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=29.44 E-value=1.2e+02 Score=28.10 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 012166 337 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 389 (469)
Q Consensus 337 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLl 389 (469)
+..++=|..|++.+..-|++||. .+..+.++-.-..--.|.-+|+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56777899999999999999996 78887776431223579999998877654
No 41
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=25.53 E-value=71 Score=30.06 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.0
Q ss_pred cCCCHHHHHHHHHhhhhCCC
Q 012166 409 RSLPKPVLCRIRELATIHPY 428 (469)
Q Consensus 409 ~~iP~~lL~RVreLA~~hpy 428 (469)
+.+|+++|++|..+|...=+
T Consensus 87 VtVPA~lLe~vl~~A~~~L~ 106 (139)
T PF07128_consen 87 VTVPADLLERVLRLAEQALW 106 (139)
T ss_pred ccccHHHHHHHHHHHHHHHh
Confidence 45899999999999987655
No 42
>PHA02095 hypothetical protein
Probab=24.25 E-value=34 Score=29.47 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.5
Q ss_pred ccccccccccccCCCccCCCCCccccc
Q 012166 32 SVDGVLSFGRENLGKSSGMDGFSYEFE 58 (469)
Q Consensus 32 svdg~l~~~~~n~~k~~~~~~f~~~f~ 58 (469)
-|||+||.+ -.+-.-|+||.|-.|
T Consensus 39 rvdgilcie---gd~~~pm~~f~~ii~ 62 (84)
T PHA02095 39 RVDGILCIE---GDKEHPMPDFEHIVE 62 (84)
T ss_pred eccEEEEec---CCCCCCchhheeeee
Confidence 489999997 347788999988777
No 43
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=22.27 E-value=99 Score=26.76 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=27.5
Q ss_pred ccccccCCCHHHHHHHHHhhhhCCCCCCcCCcccC
Q 012166 404 PKHAMRSLPKPVLCRIRELATIHPYPRVPYSKKCN 438 (469)
Q Consensus 404 rK~~~~~iP~~lL~RVreLA~~hpyp~~~~~~~~~ 438 (469)
|+....+||.+.|.+|.+.|..-|-+.+.++-+|.
T Consensus 11 R~f~~~~v~~e~l~~il~aA~~APs~~n~Qpw~f~ 45 (160)
T cd02135 11 KKLTLPAPDREQLEQILEAAARAPDHGKLEPWRFI 45 (160)
T ss_pred hhcCCCCCCHHHHHHHHHHHHhCCCcCCccCeEEE
Confidence 33444579999999999999999988777766554
No 44
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=21.80 E-value=87 Score=24.22 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=20.9
Q ss_pred ChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 361 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 361 ~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
-|..|...+.. .-+..+|+.+|++|...
T Consensus 28 aw~~Ia~~l~~---~~~~~~~~~~w~~Lr~~ 55 (85)
T PF10545_consen 28 AWQEIARELGK---EFSVDDCKKRWKNLRDR 55 (85)
T ss_pred HHHHHHHHHcc---chhHHHHHHHHHHHHHH
Confidence 48888887642 34577899999998853
Done!