Query 012166
Match_columns 469
No_of_seqs 151 out of 381
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 04:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 6.6E-25 2.2E-29 187.6 6.2 95 334-438 8-102 (105)
2 2roh_A RTBP1, telomere binding 99.9 5.3E-23 1.8E-27 180.0 8.2 95 333-437 25-119 (122)
3 2ckx_A NGTRF1, telomere bindin 99.9 5.7E-23 2E-27 168.8 5.8 80 340-430 1-81 (83)
4 2juh_A Telomere binding protei 99.9 2E-22 6.9E-27 176.1 5.9 94 333-436 11-104 (121)
5 1x58_A Hypothetical protein 49 99.7 1.7E-17 5.7E-22 131.2 6.6 55 336-392 5-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 6.2E-16 2.1E-20 120.8 6.8 54 338-393 10-63 (64)
7 1ity_A TRF1; helix-turn-helix, 99.5 4.3E-14 1.5E-18 110.3 7.7 59 334-394 5-63 (69)
8 1w0t_A Telomeric repeat bindin 99.5 5.2E-14 1.8E-18 104.9 6.5 51 339-391 2-52 (53)
9 1guu_A C-MYB, MYB proto-oncoge 99.2 2.8E-11 9.5E-16 89.3 5.9 49 339-391 3-51 (52)
10 2d9a_A B-MYB, MYB-related prot 99.1 7E-11 2.4E-15 89.6 6.3 52 337-392 6-57 (60)
11 1gvd_A MYB proto-oncogene prot 99.1 8.9E-11 3E-15 86.7 5.6 49 339-391 3-51 (52)
12 1x41_A Transcriptional adaptor 99.0 2.8E-10 9.7E-15 86.9 6.4 51 338-392 7-57 (60)
13 2dim_A Cell division cycle 5-l 99.0 3E-10 1E-14 88.6 6.2 53 337-393 7-59 (70)
14 2elk_A SPCC24B10.08C protein; 99.0 7.8E-10 2.7E-14 84.2 6.5 48 339-389 9-56 (58)
15 2yus_A SWI/SNF-related matrix- 98.9 1.6E-09 5.5E-14 87.9 6.4 52 332-388 11-62 (79)
16 2cu7_A KIAA1915 protein; nucle 98.8 7.2E-09 2.5E-13 81.5 7.6 51 338-393 8-58 (72)
17 2din_A Cell division cycle 5-l 98.8 5.3E-09 1.8E-13 80.7 5.9 51 338-394 8-58 (66)
18 1gv2_A C-MYB, MYB proto-oncoge 98.7 9.7E-09 3.3E-13 84.7 5.6 50 339-392 4-53 (105)
19 2yum_A ZZZ3 protein, zinc fing 98.7 1.1E-08 3.6E-13 80.7 5.6 50 338-391 7-61 (75)
20 2k9n_A MYB24; R2R3 domain, DNA 98.7 4.2E-08 1.4E-12 81.7 8.8 49 340-392 2-50 (107)
21 3osg_A MYB21; transcription-DN 98.7 2.1E-08 7.3E-13 85.9 6.3 52 336-392 8-59 (126)
22 1h8a_C AMV V-MYB, MYB transfor 98.6 3E-08 1E-12 84.6 6.2 51 338-392 26-76 (128)
23 2llk_A Cyclin-D-binding MYB-li 98.6 3.2E-08 1.1E-12 79.7 5.4 48 338-391 22-69 (73)
24 3osg_A MYB21; transcription-DN 98.6 5.9E-08 2E-12 83.1 5.8 55 338-397 61-115 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 98.6 6E-08 2.1E-12 79.9 5.5 49 338-391 55-103 (105)
26 3zqc_A MYB3; transcription-DNA 98.6 4.4E-08 1.5E-12 84.2 4.6 50 339-392 2-51 (131)
27 3zqc_A MYB3; transcription-DNA 98.5 9.4E-08 3.2E-12 82.2 6.5 51 339-394 54-104 (131)
28 2cqr_A RSGI RUH-043, DNAJ homo 98.5 6.3E-08 2.2E-12 77.9 4.9 52 336-391 15-69 (73)
29 2k9n_A MYB24; R2R3 domain, DNA 98.5 1E-07 3.5E-12 79.4 6.3 50 338-392 52-101 (107)
30 1h8a_C AMV V-MYB, MYB transfor 98.4 1.7E-07 5.9E-12 80.0 5.1 49 338-391 78-126 (128)
31 1h89_C C-MYB, MYB proto-oncoge 98.4 2.8E-07 9.7E-12 81.1 5.9 51 338-392 57-107 (159)
32 2ltp_A Nuclear receptor corepr 97.7 6E-08 2.1E-12 79.7 0.0 50 338-392 15-64 (89)
33 1h89_C C-MYB, MYB proto-oncoge 98.2 1E-06 3.5E-11 77.5 5.1 49 338-391 109-157 (159)
34 2cjj_A Radialis; plant develop 98.2 1.9E-06 6.4E-11 72.3 5.9 49 339-391 8-59 (93)
35 2eqr_A N-COR1, N-COR, nuclear 98.0 1.9E-05 6.3E-10 60.7 7.0 53 333-390 6-58 (61)
36 1ign_A Protein (RAP1); RAP1,ye 97.8 1.1E-05 3.8E-10 78.1 4.6 52 338-393 7-63 (246)
37 3hm5_A DNA methyltransferase 1 97.7 4.1E-05 1.4E-09 64.6 6.1 51 340-391 31-82 (93)
38 2cqq_A RSGI RUH-037, DNAJ homo 97.7 6.5E-05 2.2E-09 60.2 6.2 49 338-391 7-58 (72)
39 2ebi_A DNA binding protein GT- 97.3 8.9E-05 3E-09 59.6 2.5 56 337-392 2-66 (86)
40 1wgx_A KIAA1903 protein; MYB D 97.3 0.00042 1.4E-08 56.2 6.1 50 339-392 8-60 (73)
41 2iw5_B Protein corest, REST co 97.2 0.00043 1.5E-08 66.7 6.2 51 336-391 130-180 (235)
42 4b4c_A Chromodomain-helicase-D 97.1 0.00074 2.5E-08 61.2 6.1 53 339-391 134-196 (211)
43 4iej_A DNA methyltransferase 1 97.0 0.0013 4.4E-08 55.8 6.1 50 340-390 31-81 (93)
44 2crg_A Metastasis associated p 96.7 0.0053 1.8E-07 48.6 7.3 58 336-397 5-62 (70)
45 2yqk_A Arginine-glutamic acid 96.6 0.0053 1.8E-07 47.5 6.9 51 336-390 6-56 (63)
46 1fex_A TRF2-interacting telome 96.3 0.0042 1.4E-07 47.9 4.6 49 339-390 2-58 (59)
47 4b4c_A Chromodomain-helicase-D 96.3 0.0068 2.3E-07 54.9 6.6 54 336-391 4-59 (211)
48 1ofc_X ISWI protein; nuclear p 96.1 0.0039 1.3E-07 61.8 4.3 54 339-392 212-276 (304)
49 2xb0_X Chromo domain-containin 95.9 0.0039 1.3E-07 60.8 3.5 30 340-369 169-198 (270)
50 2xag_B REST corepressor 1; ami 95.2 0.022 7.7E-07 59.6 6.2 49 337-390 378-426 (482)
51 1irz_A ARR10-B; helix-turn-hel 95.1 0.058 2E-06 42.8 6.9 54 335-390 3-61 (64)
52 2y9y_A Imitation switch protei 95.1 0.018 6.1E-07 58.8 4.9 54 339-392 228-292 (374)
53 4eef_G F-HB80.4, designed hema 93.5 0.019 6.6E-07 47.0 0.9 43 339-385 20-65 (74)
54 4a69_C Nuclear receptor corepr 92.8 0.07 2.4E-06 44.4 3.3 49 335-388 39-87 (94)
55 2xb0_X Chromo domain-containin 89.6 0.53 1.8E-05 45.9 6.4 53 338-392 2-56 (270)
56 1ug2_A 2610100B20RIK gene prod 86.4 2 6.7E-05 36.7 7.1 54 335-392 29-84 (95)
57 1ign_A Protein (RAP1); RAP1,ye 77.1 3.1 0.00011 40.6 5.5 29 360-392 172-200 (246)
58 2lr8_A CAsp8-associated protei 77.5 0.57 1.9E-05 38.1 0.0 49 338-391 13-63 (70)
59 1ofc_X ISWI protein; nuclear p 50.4 15 0.00052 36.5 4.7 48 339-390 110-157 (304)
60 3ukx_C Bimax2 peptide; arm rep 48.0 9.1 0.00031 26.0 1.8 11 307-317 10-20 (28)
61 3ukw_C Bimax1 peptide; arm rep 42.2 7.8 0.00027 26.3 0.8 16 295-314 2-17 (28)
62 2xag_B REST corepressor 1; ami 41.5 5.5 0.00019 41.9 0.0 46 339-389 189-234 (482)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.90 E-value=6.6e-25 Score=187.62 Aligned_cols=95 Identities=26% Similarity=0.581 Sum_probs=80.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcccccccCCCCCccccccCCCH
Q 012166 334 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPK 413 (469)
Q Consensus 334 krRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~~~~~r~~~~rK~~~~~iP~ 413 (469)
.+|+++++||.||+++|++||++||.|+|+.|+..+|..|.+||.+|||||||||+|.+.+..+.+++ .+||+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg-------~~~P~ 80 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRG-------EPVPQ 80 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTC-------CSCCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccC-------CCCCH
Confidence 45788999999999999999999999999999999988889999999999999999977664443332 35999
Q ss_pred HHHHHHHHhhhhCCCCCCcCCcccC
Q 012166 414 PVLCRIRELATIHPYPRVPYSKKCN 438 (469)
Q Consensus 414 ~lL~RVreLA~~hpyp~~~~~~~~~ 438 (469)
++|+||++ +|+||.+.+.|.-.
T Consensus 81 ~~l~rv~~---~~~~~~~~~~~~~~ 102 (105)
T 2aje_A 81 ELLNRVLN---AHGYWTQQQMQQLQ 102 (105)
T ss_dssp HHHHHHHH---HHHHHHHHTTTTSS
T ss_pred HHHHHHHH---HHHHHHHHHHHHHh
Confidence 99999995 67788777776544
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.88 E-value=5.3e-23 Score=180.02 Aligned_cols=95 Identities=28% Similarity=0.557 Sum_probs=80.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcccccccCCCCCccccccCCC
Q 012166 333 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLP 412 (469)
Q Consensus 333 ~krRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~~~~~r~~~~rK~~~~~iP 412 (469)
..+||++++||.||+++|++||++||.|+|+.|++.+|..|.+||++|||||||||+|.+.+..+.++. .++|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~-------~~~p 97 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRG-------APVP 97 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCC-------SSCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCC-------CCCC
Confidence 356888999999999999999999999999999999888889999999999999999877654443322 3589
Q ss_pred HHHHHHHHHhhhhCCCCCCcCCccc
Q 012166 413 KPVLCRIRELATIHPYPRVPYSKKC 437 (469)
Q Consensus 413 ~~lL~RVreLA~~hpyp~~~~~~~~ 437 (469)
+++++||+ .+|.||.+++++..
T Consensus 98 ~e~~~~v~---~~h~~~g~~~~~~~ 119 (122)
T 2roh_A 98 QELLDRVL---AAQAYWSVDSSGRI 119 (122)
T ss_dssp HHHHHHHH---HHHHHHHSSCSCCC
T ss_pred HHHHHHHH---HHHHHHhhHHhhhh
Confidence 99999999 56667777776654
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.87 E-value=5.7e-23 Score=168.80 Aligned_cols=80 Identities=31% Similarity=0.709 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcccccc-cCCCCCccccccCCCHHHHHH
Q 012166 340 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK-NKGEVDPKHAMRSLPKPVLCR 418 (469)
Q Consensus 340 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~~~~-~r~~~~rK~~~~~iP~~lL~R 418 (469)
++||.||+++|++||++||.|+|+.|++.+|..|.+||.+|||||||||+|.+..+.+ +++ .|||+++++|
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~--------~~~p~~~~~r 72 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG--------EPVPQDLLDR 72 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCS--------SCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccC--------CCCCHHHHHH
Confidence 5899999999999999999999999999988778999999999999999998776444 433 3599999999
Q ss_pred HHHhhhhCCCCC
Q 012166 419 IRELATIHPYPR 430 (469)
Q Consensus 419 VreLA~~hpyp~ 430 (469)
|++ +|+||+
T Consensus 73 v~~---~~a~~~ 81 (83)
T 2ckx_A 73 VLA---AHAYWS 81 (83)
T ss_dssp HHH---HHHHHH
T ss_pred HHH---HHHHHh
Confidence 995 455554
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.86 E-value=2e-22 Score=176.14 Aligned_cols=94 Identities=28% Similarity=0.598 Sum_probs=80.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcccccccCCCCCccccccCCC
Q 012166 333 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLP 412 (469)
Q Consensus 333 ~krRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~~~~~r~~~~rK~~~~~iP 412 (469)
...|+++++||.||+++|++||++||.|+|+.|+..++.+|.+||.+|||||||||++.+.++.+.++. +++|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg-------~~~p 83 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPVP 83 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCC-------SCCC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCC-------CCCC
Confidence 456888999999999999999999999999999999988889999999999999999877664443322 3599
Q ss_pred HHHHHHHHHhhhhCCCCCCcCCcc
Q 012166 413 KPVLCRIRELATIHPYPRVPYSKK 436 (469)
Q Consensus 413 ~~lL~RVreLA~~hpyp~~~~~~~ 436 (469)
+++++||+ .+|.||.++.+|.
T Consensus 84 ~e~~~rv~---~~h~~~gn~~~~~ 104 (121)
T 2juh_A 84 QDLLDRVL---AAHAYWSQQQGKQ 104 (121)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCS
T ss_pred HHHHHHHH---HHHHHHccchhcc
Confidence 99999999 6677787777774
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.7e-17 Score=131.16 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=50.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 336 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 336 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
.+++++||+||+++|++||++||. +|+.|+..|.. |.+||.||||||||||.|..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF-QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC-CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC-ccCcccchHHHHHHHHHhcc
Confidence 347889999999999999999999 99999999843 68999999999999999864
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.61 E-value=6.2e-16 Score=120.84 Aligned_cols=54 Identities=26% Similarity=0.633 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 393 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 393 (469)
++++||+||+++|+++|++||.++|+.|.+.++ |.+||++||+|||+||+|.+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC--CCCCCHHHHHHHHHHHhccCC
Confidence 467899999999999999999999999998875 579999999999999999864
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.49 E-value=4.3e-14 Score=110.34 Aligned_cols=59 Identities=25% Similarity=0.598 Sum_probs=52.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhccc
Q 012166 334 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 394 (469)
Q Consensus 334 krRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 394 (469)
..++++.+||.||+++|+++|++||.++|+.|...+. |.+||++||+++|+|+++..+.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHcCCCCC
Confidence 3467789999999999999999999999999998764 4599999999999999998755
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.48 E-value=5.2e-14 Score=104.87 Aligned_cols=51 Identities=27% Similarity=0.644 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
+.+||+||+++|+++|++||.++|+.|...+. |.+||++||+++|+|++|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC--CCCCCHHHHHHHHHHHHcc
Confidence 67899999999999999999999999998864 4589999999999999985
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.18 E-value=2.8e-11 Score=89.28 Aligned_cols=49 Identities=29% Similarity=0.557 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
+.+||.||++.|+++|++||.++|+.|...+ .+||..+|+++|++++++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL----PNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS----TTCCHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----CCCCHHHHHHHHHHHcCc
Confidence 5689999999999999999999999999764 489999999999999875
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=7e-11 Score=89.58 Aligned_cols=52 Identities=23% Similarity=0.423 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 337 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 337 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
.++.+||.||++.|+++|++||.++|+.|...+ .+||..+|+++|.+++++.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF----PNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC----SSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----cCCCHHHHHHHHHHHcCCc
Confidence 356789999999999999999999999999875 4899999999999999865
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.10 E-value=8.9e-11 Score=86.74 Aligned_cols=49 Identities=29% Similarity=0.591 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
+.+||.||++.|+++|++||.++|..|...+ .+||..+|+++|.|++++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHc----CCCCHHHHHHHHHHHcCc
Confidence 5689999999999999999998999999764 599999999999999875
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=2.8e-10 Score=86.88 Aligned_cols=51 Identities=20% Similarity=0.515 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
.+.+||.+|++.|+++|++||.++|..|...+. +||..+|+++|.+++...
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC----TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT----TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC----CCCHHHHHHHHHHHccCC
Confidence 467899999999999999999999999998874 899999999999998653
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3e-10 Score=88.60 Aligned_cols=53 Identities=21% Similarity=0.490 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcc
Q 012166 337 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 393 (469)
Q Consensus 337 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 393 (469)
.++.+||.+|++.|+++|++||.++|+.|...+ .+||..+|+++|.|++++.+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS----TTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh----cCCCHHHHHHHHHHHcCCcc
Confidence 346789999999999999999999999999875 48999999999999998654
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.98 E-value=7.8e-10 Score=84.22 Aligned_cols=48 Identities=29% Similarity=0.556 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 389 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLl 389 (469)
+.+||.+|++.|+++|++||.++|+.|..... .+||..+|+++|.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVG---NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999998764 2899999999999874
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.91 E-value=1.6e-09 Score=87.90 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=46.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHh
Q 012166 332 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 388 (469)
Q Consensus 332 ~~krRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNL 388 (469)
.+..+..+.+||.+|+..|+++|++|| ++|..|.+... +||..+|+.+|.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 455566788999999999999999999 89999998764 89999999999988
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.84 E-value=7.2e-09 Score=81.49 Aligned_cols=51 Identities=25% Similarity=0.573 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 393 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 393 (469)
.+.+||.||++.|+++|++||. +|+.|...+ .+||..+||.+|.++++...
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~----~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKLI----GSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999 999999865 48999999999999997643
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=5.3e-09 Score=80.72 Aligned_cols=51 Identities=20% Similarity=0.344 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhccc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 394 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 394 (469)
++.+||.||++.|++.|++||. +|+.|.. +. +||..+|+++|.++++....
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~----gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II----GRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH----SSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc----CcCHHHHHHHHHHHhChHhc
Confidence 3568999999999999999998 9999998 54 79999999999999987543
No 18
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.74 E-value=9.7e-09 Score=84.67 Aligned_cols=50 Identities=26% Similarity=0.566 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
+.+||++|++.|+.+|++||.++|..|...+ .+||+.+|+++|+|++.+.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p~ 53 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNPE 53 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh----cCCCHHHHHHHHHhccCCc
Confidence 5689999999999999999999999998654 5999999999999988653
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.1e-08 Score=80.66 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC-----CChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 338 NQRMWTLSEVMKLIDGISQFGV-----GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~-----G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
.+.+||.||++.|+++|++||. ++|..|...+. +||..||+++|.++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG----NRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 4568999999999999999996 79999998764 89999999999888864
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.71 E-value=4.2e-08 Score=81.73 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 340 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 340 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
.+||+||++.|+.+|++||.++|..|...+ .+||+.+|+++|.|.+.+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLM----ITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHT----TTSCHHHHHHHHHHHSSSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhc----CCCCHHHHHHHHHHHHccc
Confidence 579999999999999999999999999765 4899999999999998754
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.68 E-value=2.1e-08 Score=85.85 Aligned_cols=52 Identities=27% Similarity=0.485 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 336 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 336 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
..++.+||+||++.|+.+|++||. +|..|...+ .+||+.+|+++|+|.+...
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~ 59 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF----PNRNARQCRDRWKNYLAPS 59 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC----TTCCHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHhhhcccc
Confidence 445678999999999999999998 999998754 5899999999999998654
No 22
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.65 E-value=3e-08 Score=84.63 Aligned_cols=51 Identities=29% Similarity=0.663 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
++.+||.||++.|+++|++||.++|..|...+ .+||..+|+++|.|++.+.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL----KGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS----SSCCHHHHHHHHHHTTCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh----cCCcHHHHHHHHHHhcccc
Confidence 35689999999999999999999999999765 4999999999999988653
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.63 E-value=3.2e-08 Score=79.73 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
++.+||+||++.|++.|++||. +|+.|.+.+ +||..+||++|+.|.+.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-----gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-----GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-----TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-----CCCHHHHHHHHHHHHHH
Confidence 4568999999999999999998 699999764 89999999999988764
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.57 E-value=5.9e-08 Score=83.09 Aligned_cols=55 Identities=24% Similarity=0.498 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcccccc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 397 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~~~~ 397 (469)
.+.+||.||++.|+++|++||. +|+.|... |.+||..+||++|++|++.-..|..
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~~k~~~p~~ 115 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAKF----FPGRTDIHIKNRWVTISNKLGIPQT 115 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHHHHHHTTC---
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 3568999999999999999995 99999964 3599999999999999987555443
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.56 E-value=6e-08 Score=79.93 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
.+.+||.||++.|+.+|++||. +|+.|... |.+||..+||++|++++|.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT----CTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHHHhc
Confidence 3578999999999999999996 99999964 3699999999999999874
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.55 E-value=4.4e-08 Score=84.22 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
+.+||.||++.|+.+|++||.++|..|...+ .+||+.+|+++|+|.+.+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~ 51 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL----PNRSPKQCRERWFNHLDPA 51 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC----TTSCHHHHHHHHHHHTSTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH----CCCCHHHHHHHHhhccCcc
Confidence 3579999999999999999999999998654 5999999999999998754
No 27
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.55 E-value=9.4e-08 Score=82.21 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhccc
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 394 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 394 (469)
+.+||.+|++.|+.+|.+||. +|+.|... |.+||..+||++|+++++....
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAKL----IPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTTT----STTCCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHHHhh
Confidence 458999999999999999995 99999864 3599999999999999987654
No 28
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.54 E-value=6.3e-08 Score=77.89 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 336 RKNQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 336 RK~rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
+-...+||.+|+.+|+.+|++||. .+|..|...+. +||..+|+.+|.+|++-
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP----SKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHHc
Confidence 445678999999999999999994 58999997764 89999999999999863
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.54 E-value=1e-07 Score=79.39 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
.+.+||.||++.|+.+|.+||. +|+.|...+ .+||..+||++|++|++..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISKFL----KNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhhH
Confidence 3578999999999999999997 999999865 4999999999999999753
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.43 E-value=1.7e-07 Score=79.96 Aligned_cols=49 Identities=24% Similarity=0.587 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
++.+||.||++.|+++|++||. +|+.|...+ .+||..+||++|++++|.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLL----PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGGGS----TTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999997 999999653 599999999999999874
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.40 E-value=2.8e-07 Score=81.10 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
.+.+||.+|++.|+.+|++||.++|+.|...+ .+||..+|+++|.|++.+.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS----TTCCHHHHHHHHHHTTCTT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHc----CCCCHHHHHHHHHHHhCcc
Confidence 35789999999999999999998999998654 5999999999999998643
No 32
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.68 E-value=6e-08 Score=79.66 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
.+.+||.+|++.|+++|++||. +|+.|...+ .+||..+||.+|.++++..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l----~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV----GSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 3568999999999999999998 899998764 5999999999999999754
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.21 E-value=1e-06 Score=77.51 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
.+.+||.+|+..|+++|++||. +|+.|.+. |.+||..+||.+|..|+|.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999997 99999974 3699999999999999874
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.19 E-value=1.9e-06 Score=72.25 Aligned_cols=49 Identities=18% Similarity=0.486 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 339 QRMWTLSEVMKLIDGISQFG---VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG---~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
..+||.+|+..|..++.+|| ..+|..|..... +||..+|+.+|.+|++.
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE----GRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST----TCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 45799999999999999998 457999998764 89999999999999753
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=1.9e-05 Score=60.68 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=45.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 012166 333 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 390 (469)
Q Consensus 333 ~krRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK 390 (469)
.+.|+...+||++|.+.+++|+.+||. +|..|.... .+||..||...|....|
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l----~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYL----ERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHC----TTSCHHHHHHHHHHHTC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHHHhcC
Confidence 345677899999999999999999996 999998553 58999999999977655
No 36
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.83 E-value=1.1e-05 Score=78.05 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCC-----hHHHHHHhcCCCCCCChhhHHHHHHHhhhhcc
Q 012166 338 NQRMWTLSEVMKLIDGISQFGVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 393 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~G~-----W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 393 (469)
.+.+||.||++.|++.|++||..+ |+.|... +.+||.-+||++|+++++...
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHhhhc
Confidence 356899999999999999998853 9999964 469999999999999998764
No 37
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.74 E-value=4.1e-05 Score=64.61 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCCCCCChhhHHHHHHHhhhh
Q 012166 340 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 340 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f-~if~~RT~VDLKDKWRNLlK~ 391 (469)
.+||.||++.|.+-+++||. +|..|.+.|. ..+..||..|||++|..+++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999997 9999999883 334689999999999888864
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.69 E-value=6.5e-05 Score=60.18 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 338 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
....||.+|...|.+++.+|+. .+|..|.... +||..+++.+|..|.+.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-----gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-----GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-----TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-----CCCHHHHHHHHHHHHHh
Confidence 3567999999999999999994 5799999874 69999999999999865
No 39
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.32 E-value=8.9e-05 Score=59.59 Aligned_cols=56 Identities=29% Similarity=0.435 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC----CC-----ChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 337 KNQRMWTLSEVMKLIDGISQFG----VG-----KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 337 K~rr~WT~EEveaLv~GVeKyG----~G-----~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
+....||.+|+.+|+......- .+ .|..|.......=-.||+.+|++||.||.+..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3467799999999999987532 11 69999887521101799999999999999864
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.28 E-value=0.00042 Score=56.18 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 339 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
...||.+|..+|..++..|+. ++|..|..... +||..+|+.+|.-|.+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG----SRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT----TSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC----CCCHHHHHHHHHHHHhcc
Confidence 357999999999999999986 68999998764 799999999999997653
No 41
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.19 E-value=0.00043 Score=66.73 Aligned_cols=51 Identities=18% Similarity=0.415 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 336 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 336 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
.+...+||.+|.+.+++|+.+||. +|..|.+... +||..++|.-|.+..|.
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg----TKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG----NKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS----SCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 456788999999999999999997 8999998764 89999999999887753
No 42
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.06 E-value=0.00074 Score=61.20 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhc---------CC-CCCCChhhHHHHHHHhhhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLF---------SS-SSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f---------~i-f~~RT~VDLKDKWRNLlK~ 391 (469)
...||.+|+..|+.||.+||.|+|..|+.+.. +. ...++++.|..|--.|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 45699999999999999999999999999731 11 2456778888887766664
No 43
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.95 E-value=0.0013 Score=55.76 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCCCCCChhhHHHHHHHhhh
Q 012166 340 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLR 390 (469)
Q Consensus 340 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f-~if~~RT~VDLKDKWRNLlK 390 (469)
..||.||+..|.+-+++|+. +|-.|.+.|. ..+..||--|||++|-.+++
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999997 9999999983 33568999999999977765
No 44
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.66 E-value=0.0053 Score=48.58 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhcccccc
Q 012166 336 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 397 (469)
Q Consensus 336 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~~~~ 397 (469)
|+....||++|.....+|+.+||. +|..|...+ +..||..||..-|-...|...+.++
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt~~y~q~ 62 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDF---LPWKSLTSIIEYYYMWKTTDRYVQQ 62 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTT---CSSSCHHHHHHHHHHHHTCCSSCSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCCHHHHHHHHHhhcCCchHHHH
Confidence 567889999999999999999999 899999743 3589999999988866665444333
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.0053 Score=47.52 Aligned_cols=51 Identities=20% Similarity=0.430 Sum_probs=42.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 012166 336 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 390 (469)
Q Consensus 336 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK 390 (469)
+.....||++|.+...+|+.+||. +|..|.+.+. ..||..||..-|-...|
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v---~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELL---PNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSC---TTSCHHHHHHHHHHHHC
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHc---CCCcHHHHHHHHhcccC
Confidence 345678999999999999999999 8999997542 58999999987765544
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.31 E-value=0.0042 Score=47.91 Aligned_cols=49 Identities=14% Similarity=0.307 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 012166 339 QRMWTLSEVMKLIDGISQF--------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 390 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKy--------G~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK 390 (469)
|.+||+||+.+|++-|.+| |.--|+.|.... +..+|-..++|+|+.-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~---~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS---LTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC---SSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH---CCCCCHHHHHHHHHHHcc
Confidence 6789999999999999999 555699987721 369999999999998654
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.28 E-value=0.0068 Score=54.88 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=43.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 336 RKNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 336 RK~rr~WT~EEveaLv~GVeKyG--~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
|...+.||..|...|+.++.+|| .++|..|..+.. |.++|..++++=.+.+...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~--L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE--LVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT--CTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHH
Confidence 45677899999999999999999 689999998853 6799999999877666643
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.09 E-value=0.0039 Score=61.82 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHhhhhc
Q 012166 339 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~-------f~i-f~~RT~VDLKDKWRNLlK~s 392 (469)
.+.||.+|+..|+-++.+||. |+|..|+... |+. |..||+++|..+-..|+++-
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 347999999999999999999 9999998552 333 38899999999999999863
No 49
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.93 E-value=0.0039 Score=60.79 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh
Q 012166 340 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL 369 (469)
Q Consensus 340 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~ 369 (469)
-.|+.+|+..|+.||-+||.|+|..|+.+-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 459999999999999999999999999984
No 50
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.22 E-value=0.022 Score=59.63 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 012166 337 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 390 (469)
Q Consensus 337 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK 390 (469)
+..-+||.+|.+.+++||.+||. +|..|..... .||..++|.-|.+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg----TKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG----NKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS----SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 45778999999999999999998 9999998864 7999999998876554
No 51
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.13 E-value=0.058 Score=42.85 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=43.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCC--ChHHHHHHhcCCCCCCChhhHH---HHHHHhhh
Q 012166 335 RRKNQRMWTLSEVMKLIDGISQFGVG--KWTDIKRLLFSSSSHRTPIDLR---DKWRNLLR 390 (469)
Q Consensus 335 rRK~rr~WT~EEveaLv~GVeKyG~G--~W~~Il~~~f~if~~RT~VDLK---DKWRNLlK 390 (469)
.+|+|..||+|.-+..+++|+++|.. .|+.|++... ..+.|..++| .|||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999953 3899998875 3688988888 56776554
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.09 E-value=0.018 Score=58.76 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHhhhhc
Q 012166 339 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~-------f~i-f~~RT~VDLKDKWRNLlK~s 392 (469)
.+.||.+|+..|+-++.+||. |+|..|+... |+- |..||+..|..|-..|+++-
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 347999999999999999999 9999998772 333 38899999999999999864
No 53
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=93.46 E-value=0.019 Score=46.99 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC---ChHHHHHHhcCCCCCCChhhHHHHH
Q 012166 339 QRMWTLSEVMKLIDGISQFGVG---KWTDIKRLLFSSSSHRTPIDLRDKW 385 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G---~W~~Il~~~f~if~~RT~VDLKDKW 385 (469)
-..||.+|..+|..++.+|..+ +|..|....+ +||..+++..+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp----GKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK----GRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC----SSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC----CCCHHHHHHHH
Confidence 4579999999999999999976 9999987654 89999998765
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=92.79 E-value=0.07 Score=44.36 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=40.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHh
Q 012166 335 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 388 (469)
Q Consensus 335 rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNL 388 (469)
.|.....||++|.+.+.+++..||. +|..|... +..||..+|-.=+-..
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~----l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIASF----LERKTVAECVLYYYLT 87 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHT----CTTCCHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHH----cCCCCHHHHHHHHhcc
Confidence 3466788999999999999999998 99999643 3699999998655433
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.60 E-value=0.53 Score=45.94 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 338 NQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG--~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
+++.||..|+..|++++.+|| .++|..|..+.. |..+....++.=+..|+..+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~--L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGT--LPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS--SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999 489999998853 78999999998887776543
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=86.44 E-value=2 Score=36.73 Aligned_cols=54 Identities=17% Similarity=0.389 Sum_probs=46.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 335 RRKNQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 335 rRK~rr~WT~EEveaLv~GVeKyG~--G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
.-.+-..||.+|+..++...++-|. -.|+.|...+ .+|++-++++|++.|++.-
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L----~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL----GNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH----SSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHH----ccCCHHHHHHHHHHHHHHH
Confidence 3446778999999999999999986 4799988776 4899999999999999853
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=77.05 E-value=3.1 Score=40.56 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.4
Q ss_pred CChHHHHHHhcCCCCCCChhhHHHHHHHhhhhc
Q 012166 360 GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 392 (469)
Q Consensus 360 G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~s 392 (469)
+.|+.|.+.+ .+||.+..|||||.+++..
T Consensus 172 ~~fk~ia~~~----P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 172 EFFKHFAEEH----AAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp THHHHHHHHT----TTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHC----CCCChhhHHHHHHHHHhhc
Confidence 3699998775 4999999999999998754
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=77.47 E-value=0.57 Score=38.11 Aligned_cols=49 Identities=10% Similarity=0.266 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhcCCCCCCChhhHHHHHHHhhhh
Q 012166 338 NQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 391 (469)
Q Consensus 338 ~rr~WT~EEveaLv~GVeKyG~--G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK~ 391 (469)
.-..||.||+..++..+++-|. -.|+.|... + +||+-++++|++.|++.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~----L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAK----L-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4567999999999999999986 367777643 4 79999999999999874
No 59
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=50.36 E-value=15 Score=36.46 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 390 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLlK 390 (469)
-..||..+-.+++.|+.+||..+|..|..... +.|..+++.=...+..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~----~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE----GKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST----TCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc----CCCHHHHHHHHHHHHH
Confidence 44699999999999999999999999997664 7999999876666664
No 60
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=48.01 E-value=9.1 Score=25.95 Aligned_cols=11 Identities=36% Similarity=0.002 Sum_probs=7.9
Q ss_pred ccccCCCCCCC
Q 012166 307 LGFESDDDIFS 317 (469)
Q Consensus 307 ~t~E~Dd~~d~ 317 (469)
++-||||++|+
T Consensus 10 rkrewdddddp 20 (28)
T 3ukx_C 10 RKREWDDDDDP 20 (28)
T ss_dssp CCCCCCCSSSC
T ss_pred hhcccccCCCc
Confidence 56799986553
No 61
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=42.16 E-value=7.8 Score=26.28 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=8.7
Q ss_pred cccCCCCCCCCCccccCCCC
Q 012166 295 LRGGRLKKRSPILGFESDDD 314 (469)
Q Consensus 295 ~R~srm~kn~Sa~t~E~Dd~ 314 (469)
.|+.||+| +.+|||.+
T Consensus 2 srrrrprk----rplewded 17 (28)
T 3ukw_C 2 SRRRRPRK----RPLEWDED 17 (28)
T ss_dssp -----CCC----CCCCCCGG
T ss_pred cccccccc----CCcccccc
Confidence 35666777 88999873
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=41.55 E-value=5.5 Score=41.92 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 012166 339 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 389 (469)
Q Consensus 339 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~if~~RT~VDLKDKWRNLl 389 (469)
...||.+|...+.+|+.+||. +|..|.+. +.+||.-+|-.-|....
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~~----lp~Ksv~e~V~yYY~WK 234 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQM----LPDKSIASLVKFYYSWK 234 (482)
T ss_dssp ---------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHHH----cCCCCHHHHHHHhcccc
Confidence 357999999999999999998 89999854 35888877765544333
Done!